EBUS-STAT Subscore Analysis to Predict the Efficacy and Assess the Validity of Virtual Reality Simulation for EBUS-TBNA Training Among Experienced Bronchoscopists.

PubMed

Scarlata, Simone; Palermo, Patrizio; Candoli, Piero; Tofani, Ariela; Petitti, Tommasangelo; Corbetta, Lorenzo

2017-04-01

Linear endobronchial ultrasound transbronchial needle aspiration (EBUS-TBNA) represents a pivotal innovation in interventional pulmonology; determining the best approach to guarantee systematic and efficient training is expected to become a main issue in the forthcoming years. Virtual reality simulators have been proposed as potential EBUS-TBNA training instruments, to avoid unskilled beginners practicing directly in real-life settings. A validated and perfected simulation program could be used before allowing beginners to practice on patients. Our goal was to test the reliability of the EBUS-Skills and Task Assessment Tool (STAT) and its subscores for measuring the competence of experienced bronchoscopists approaching EBUS-guided TBNA, using only the virtual reality simulator as both a training and an assessment tool. Fifteen experienced bronchoscopists, with poor or no experience in EBUS-TBNA, participated in this study. They were all administered the Italian version of the EBUS-STAT evaluation tool, during a high-fidelity virtual reality simulation. This was followed by a single 7-hour theoretical and practical (on simulators) session on EBUS-TBNA, at the end of which their skills were reassessed by EBUS-STAT. An overall, significant improvement in EBUS-TBNA skills was observed, thereby confirming that (a) virtual reality simulation can facilitate practical learning among practitioners, and (b) EBUS-STAT is capable of detecting these improvements. The test's overall ability to detect differences was negatively influenced by the minimal variation of the scores relating to items 1 and 2, was not influenced by the training, and improved significantly when the 2 items were not considered. Apart from these 2 items, all the remaining subscores were equally capable of revealing improvements in the learner. Lastly, we found that trainees with presimulation EBUS-STAT scores above 79 did not show any significant improvement after virtual reality training, suggesting that this score represents a cutoff value capable of predicting the likelihood that simulation can be beneficial. Virtual reality simulation is capable of providing a practical learning tool for practitioners with previous experience in flexible bronchoscopy, and the EBUS-STAT questionnaire is capable of detecting these changes. A pretraining EBUS-STAT score below 79 is a good indicator of those candidates who will benefit from the simulation training. Further studies are needed to verify whether a modified version of the questionnaire would be capable of improving its performance among experienced bronchoscopists.

First Evaluation of the New Thin Convex Probe Endobronchial Ultrasound Scope: A Human Ex Vivo Lung Study.

PubMed

Patel, Priya; Wada, Hironobu; Hu, Hsin-Pei; Hirohashi, Kentaro; Kato, Tatsuya; Ujiie, Hideki; Ahn, Jin Young; Lee, Daiyoon; Geddie, William; Yasufuku, Kazuhiro

2017-04-01

Endobronchial ultrasonography (EBUS)-guided transbronchial needle aspiration allows for sampling of mediastinal lymph nodes. The external diameter, rigidity, and angulation of the convex probe EBUS renders limited accessibility. This study compares the accessibility and transbronchial needle aspiration capability of the prototype thin convex probe EBUS against the convex probe EBUS in human ex vivo lungs rejected for transplant. The prototype thin convex probe EBUS (BF-Y0055; Olympus, Tokyo, Japan) with a thinner tip (5.9 mm), greater upward angle (170 degrees), and decreased forward oblique direction of view (20 degrees) was compared with the current convex probe EBUS (6.9-mm tip, 120 degrees, and 35 degrees, respectively). Accessibility and transbronchial needle aspiration capability was assessed in ex vivo human lungs declined for lung transplant. The distance of maximum reach and sustainable endoscopic limit were measured. Transbronchial needle aspiration capability was assessed using the prototype 25G aspiration needle in segmental lymph nodes. In all evaluated lungs (n = 5), the thin convex probe EBUS demonstrated greater reach and a higher success rate, averaging 22.1 mm greater maximum reach and 10.3 mm further endoscopic visibility range than convex probe EBUS, and could assess selectively almost all segmental bronchi (98% right, 91% left), demonstrating nearly twice the accessibility as the convex probe EBUS (48% right, 47% left). The prototype successfully enabled cytologic assessment of subsegmental lymph nodes with adequate quality using the dedicated 25G aspiration needle. Thin convex probe EBUS has greater accessibility to peripheral airways in human lungs and is capable of sampling segmental lymph nodes using the aspiration needle. That will allow for more precise assessment of N1 nodes and, possibly, intrapulmonary lesions normally inaccessible to the conventional convex probe EBUS. Copyright © 2017 The Society of Thoracic Surgeons. Published by Elsevier Inc. All rights reserved.

The role of endobronchial ultrasound versus mediastinoscopy for non-small cell lung cancer.

PubMed

Czarnecka-Kujawa, Katarzyna; Yasufuku, Kazuhiro

2017-03-01

This review provides an update on the current role of endobronchial ultrasound-guided transbronchial needle aspiration (EBUS-TBNA) and mediastinoscopy (Med) in assessment of patients with non-small cell lung cancer (NSCLC). Invasive mediastinal lymph node (LN) staging is the major application for both of these techniques. Up until recently, Med was the gold standard for invasive mediastinal LN staging in NSCLC. However, EBUS-TBNA has shown to be equivalent, and in some studies better than Med for invasive staging of lung cancer. EBUS-TBNA offers access to N1 LNs and development of the thin convex probe EBUS (TCP-EBUS) will expand EBUS-TBNA access from the paratracheal region and central airways to more distal parabronchial regions allowing for more extensive N1 LN assessment and sampling more distal lung tumors. EBUS-TBNA is more cost-effective than Med and it is currently recommended as the test of first choice for invasive mediastinal LN staging in lung cancer. Confirmatory Med should be performed selectively in patients with high pretest probability of metastatic disease. Addition of esophageal ultrasound fine needle aspiration (EUS-FNA) may increase diagnostic yield of EBUS-TBNA mediastinal staging. Both Med and EBUS-TBNA can be used in primary lung cancer diagnosis, restaging of the mediastinum following neoadjuvant therapy and in diagnosis of lung cancer recurrence. In the future, a combination of EBUS-TBNA with or without EUS-FNA and Med is most likely going to provide the most optimal invasive assessment of the mediastinum in patients with lung cancer. The decision on test choice and sequence should be made on a case-by-case basis and factoring in local resources and expertise.

The value of rapid on-site evaluation during EBUS-TBNA.

PubMed

Cardoso, A V; Neves, I; Magalhães, A; Sucena, M; Barroca, H; Fernandes, G

2015-01-01

Rapid on-site evaluation (ROSE) has the potential to increase endobronchial ultrasound-guided transbronchial needle aspiration (EBUS-TBNA) accuracy in the diagnosis of mediastinal lesions and lung cancer staging. However, studies have reported controversial results. The purpose of our study was to evaluate the influence of ROSE on sample adequacy and diagnostic accuracy of EBUS-TBNA. Prospective observational study that enrolled 81 patients who underwent EBUS-TBNA for investigation of hilo-mediastinal lesions or lung cancer staging. The first 41 patients underwent EBUS-TBNA with ROSE (ROSE group) and the last 40 patients without ROSE (non-ROSE group). Sample adequacy and diagnostic accuracy of EBUS-TBNA in both groups were compared. Adequate samples were obtained in 93% of the patients in the ROSE group and 80% in non-ROSE group (p=0.10). The diagnostic accuracy of EBUS-TBNA was 91% in ROSE group and 83% in non-ROSE group (p=0.08). Analyzing the EBUS-TBNA purpose, in the subgroup of patients who underwent EBUS-TBNA for investigation of hilo-mediastinal lesions, these differences between ROSE and non-ROSE group were higher compared to lung cancer staging, 93% of patients with adequate samples in the ROSE group vs. 75% in the non-ROSE group (p=0.06) and 87% of diagnostic accuracy in ROSE group vs. 77% in non-ROSE group (p=0.10). Despite the lack of statistical significance, ROSE appears to be particularly useful in the diagnostic work-up of hilo-mediastinal lesions, increasing the diagnostic yield of EBUS-TBNA. Copyright © 2014 Sociedade Portuguesa de Pneumologia. Published by Elsevier España, S.L.U. All rights reserved.

Radial-probe EBUS for the diagnosis of peripheral pulmonary lesions

PubMed Central

Jacomelli, Marcia; Demarzo, Sergio Eduardo; Cardoso, Paulo Francisco Guerreiro; Palomino, Addy Lidvina Mejia; Figueiredo, Viviane Rossi

2016-01-01

ABSTRACT Objective: Conventional bronchoscopy has a low diagnostic yield for peripheral pulmonary lesions. Radial-probe EBUS employs a rotating ultrasound transducer at the end of a probe that is passed through the working channel of the bronchoscope. Radial-probe EBUS facilitates the localization of peripheral pulmonary nodules, thus increasing the diagnostic yield. The objective of this study was to present our initial experience using radial-probe EBUS in the diagnosis of peripheral pulmonary lesions at a tertiary hospital. Methods: We conducted a retrospective analysis of 54 patients who underwent radial-probe EBUS-guided bronchoscopy for the investigation of pulmonary nodules or masses between February of 2012 and September of 2013. Radial-probe EBUS was performed with a flexible 20-MHz probe, which was passed through the working channel of the bronchoscope and advanced through the bronchus to the target lesion. For localization of the lesion and for collection procedures (bronchial brushing, transbronchial needle aspiration, and transbronchial biopsy), we used fluoroscopy. Results: Radial-probe EBUS identified 39 nodules (mean diameter, 1.9 ∓ 0.7 cm) and 19 masses (mean diameter, 4.1 ∓ 0.9 cm). The overall sensitivity of the method was 66.7% (79.5% and 25.0%, respectively, for lesions that were visible and not visible by radial-probe EBUS). Among the lesions that were visible by radial-probe EBUS, the sensitivity was 91.7% for masses and 74.1% for nodules. The complications were pneumothorax (in 3.7%) and bronchial bleeding, which was controlled bronchoscopically (in 9.3%). Conclusions: Radial-probe EBUS shows a good safety profile, a low complication rate, and high sensitivity for the diagnosis of peripheral pulmonary lesions. PMID:27832231

Endobronchial ultrasound-guided transbronchial needle aspiration of thyroid: Report of two cases and systematic review of literature

PubMed Central

Madan, Karan; Mittal, Saurabh; Hadda, Vijay; Jain, Deepali; Mohan, Anant; Guleria, Randeep

2016-01-01

Endobronchial ultrasound-guided transbronchial needle aspiration (EBUS-TBNA) is a minimally invasive and safe technique for a sampling of mediastinal lesions. Indications for EBUS-TBNA have gradually expanded since its introduction. The usual approach to cytological sampling of the thyroid gland is percutaneous ultrasound-guided fine needle aspiration (US-FNA) performed under local anesthesia. US-FNA may be risky or not feasible in intrathoracic/substernal thyroid location. Feasibility of aspirating thyroid lesions with EBUS-TBNA has been occasionally reported. We report two patients wherein EBUS-TBNA was utilized for thyroid lesion aspiration and definitive diagnosis. We highlight the utility and safety of EBUS-TBNA in the evaluation of intrathoracic thyroid lesions wherein image-guided percutaneous aspiration may be risky/sometimes impossible to perform. A systematic review of literature has also been performed summarizing and discussing the issues pertaining to EBUS-TBNA of the thyroid gland. PMID:27891005

Radial-probe EBUS for the diagnosis of peripheral pulmonary lesions.

PubMed

Jacomelli, Marcia; Demarzo, Sergio Eduardo; Cardoso, Paulo Francisco Guerreiro; Palomino, Addy Lidvina Mejia; Figueiredo, Viviane Rossi

2016-01-01

Conventional bronchoscopy has a low diagnostic yield for peripheral pulmonary lesions. Radial-probe EBUS employs a rotating ultrasound transducer at the end of a probe that is passed through the working channel of the bronchoscope. Radial-probe EBUS facilitates the localization of peripheral pulmonary nodules, thus increasing the diagnostic yield. The objective of this study was to present our initial experience using radial-probe EBUS in the diagnosis of peripheral pulmonary lesions at a tertiary hospital. We conducted a retrospective analysis of 54 patients who underwent radial-probe EBUS-guided bronchoscopy for the investigation of pulmonary nodules or masses between February of 2012 and September of 2013. Radial-probe EBUS was performed with a flexible 20-MHz probe, which was passed through the working channel of the bronchoscope and advanced through the bronchus to the target lesion. For localization of the lesion and for collection procedures (bronchial brushing, transbronchial needle aspiration, and transbronchial biopsy), we used fluoroscopy. Radial-probe EBUS identified 39 nodules (mean diameter, 1.9 ± 0.7 cm) and 19 masses (mean diameter, 4.1 ± 0.9 cm). The overall sensitivity of the method was 66.7% (79.5% and 25.0%, respectively, for lesions that were visible and not visible by radial-probe EBUS). Among the lesions that were visible by radial-probe EBUS, the sensitivity was 91.7% for masses and 74.1% for nodules. The complications were pneumothorax (in 3.7%) and bronchial bleeding, which was controlled bronchoscopically (in 9.3%). Radial-probe EBUS shows a good safety profile, a low complication rate, and high sensitivity for the diagnosis of peripheral pulmonary lesions. A broncoscopia convencional possui baixo rendimento diagnóstico para lesões pulmonares periféricas. A ecobroncoscopia radial (EBUS radial) emprega um transdutor ultrassonográfico rotatório na extremidade de uma sonda que é inserida no canal de trabalho do broncoscópio. O EBUS radial facilita a localização de nódulos pulmonares periféricos, aumentando assim o rendimento diagnóstico. O objetivo deste estudo foi apresentar nossa experiência inicial com o uso de EBUS radial para o diagnóstico de lesões pulmonares periféricas em um hospital terciário. Foi realizada uma análise retrospectiva de 54 pacientes submetidos à broncoscopia guiada por EBUS radial para a investigação de nódulos ou massas pulmonares entre fevereiro de 2012 e setembro de 2013. O EBUS radial foi realizado com uma sonda flexível de 20 MHz, que foi inserida no canal de trabalho do broncoscópio até chegar à lesão-alvo. A fluoroscopia foi usada para localizar a lesão e realizar procedimentos de coleta (escovado brônquico, aspiração transbrônquica com agulha e biópsia transbrônquica). O EBUS radial identificou 39 nódulos (média de diâmetro: 1,9 ± 0,7 cm) e 19 massas (média de diâmetro: 4,1 ± 0,9 cm). A sensibilidade global do EBUS radial foi de 66,7% (79,5% para as lesões visíveis pelo método e 25% para as lesões não visíveis pelo método). Nas lesões visíveis pelo método, a sensibilidade foi de 91,7% para massas e de 74,1% para nódulos. As complicações foram pneumotórax (3,7%) e sangramento brônquico controlado broncoscopicamente (9,3%). O EBUS radial apresenta bom perfil de segurança, baixo índice de complicações e alta sensibilidade para o diagnóstico de lesões pulmonares periféricas.

Endobronchial ultrasound-guided transbronchial needle aspiration of pulmonary artery tumors: A systematic review (with video).

PubMed

Harris, Kassem; Modi, Kush; Kumar, Abhishek; Dhillon, Samjot Singh

2015-01-01

Convex probe endobronchial ultrasound (CP-EBUS) was originally introduced as a diagnostic and staging tool for lung cancer and subsequently utilized for diagnosis of other malignant and benign mediastinal diseases such as melanoma, lymphoma, and sarcoidosis. More recently, CP-EBUS has been successfully used for the visualization and diagnosis of pulmonary emboli and other vascular lesions including primary and metastatic pulmonary artery (PA) tumors. In this review, we will underline the role of EBUS-guided transbronchial needle aspiration (EBUS-TBNA) for the diagnosis of pulmonary arterial tumors such as sarcomas and tumor emboli. We will concisely discuss the clinical applications of EBUS-TBNA and the types of pulmonary arterial tumors and their different diagnostic modalities. We searched the Cochrane Library and PubMed from 2004 to 2014 to provide the most comprehensive review. Only 10 cases of EBUS-TBNA for intravascular lesions were identified in the literature. Although many cases of EBUS and EUS-guided transvascular tumor biopsies were described in the literature, there were no reported cases of endoscopic ultrasound-guided fine needle aspiration (EUS-FNA) for intravascular tumor biopsies. Except for one paper, all cases were published as case reports.

Diagnostic performance of convex probe EBUS-TBNA in patients with mediastinal and coexistent endobronchial or peripheral lesions

PubMed Central

Verma, Akash; Goh, Kee San; Phua, Chee Kiang; Sim, Wen Yuan; Tee, Kuan Sen; Lim, Albert Y.H.; Tai, Dessmon Y.H.; Goh, Soon Keng; Kor, Ai Ching; Ho, Benjamin; Lew, Sennen J.W.; Abisheganaden, John

2016-01-01

Abstract To compare the performance of convex probe endobronchial ultrasound guided transbronchial needle aspiration (EBUS-TBNA) with conventional endobronchial biopsy (EBB) or transbronchial lung biopsy (TBLB) in patients with mediastinal, and coexisting endobronchial or peripheral lesions. Retrospective review of records of patients undergoing diagnostic EBUS-TBNA and conventional bronchoscopy in 2014. A total of 74 patients had mediastinal, and coexisting endobronchial or peripheral lesions. The detection rate of EBUS-TBNA for mediastinal lesion >1 cm in short axis, EBB for visible exophytic type of endobronchial lesion, and TBLB for peripheral lesion with bronchus sign were 71%, 75%, and 86%, respectively. In contrast, the detection rate of EBUS-TBNA for mediastinal lesion ≤1 cm in short axis, EBB for mucosal hyperemia type of endobronchial lesion, and TBLB for peripheral lesion without bronchus sign were 25%, 63%, and 38%, and improved to 63%, 88%, and 62% respectively by adding EBB or TBLB to EBUS-TBNA, and EBUS-TBNA to EBB or TBLB. Postprocedure bleeding was significantly more common in patients undergoing EBB and TBLB 8 (40%) versus convex probe EBUS-TBNA 2 patients (2.7%, P = 0.0004). EBUS-TBNA is a safer single diagnostic technique compared with EBB or TBLB in patients with mediastinal lesion of >1 cm in size, and coexisting exophytic type of endobronchial lesion, or peripheral lesion with bronchus sign. However, it requires combining with EBB or TBLB and vice versa to optimize yield when mediastinal lesion is ≤1 cm in size, and coexisting endobronchial and peripheral lesions lack exophytic nature, and bronchus sign, respectively. PMID:27977603

Endobronchial ultrasonography using a guide sheath technique for diagnosis of peripheral pulmonary lesions

PubMed Central

Zhang, Lei; Wu, Hongxu; Wang, Guiqi

2017-01-01

Endobronchial ultrasonography using a guide sheath (EBUS-GS) is a novel method used for collecting peripheral pulmonary lesion (PPL) samples. EBUS-GS is performed by introducing a guide sheath-covered miniprobe into the target bronchus and then withdrawing the miniprobe after lesion detection, leaving the guide sheath in situ as a working channel for obtaining lesion samples. EBUS-GS can improve PPL diagnosis rates and be used for obtaining specimens for molecular analysis. In this review, we discuss the clinical applications of EBUS-GS, the factors that affect its diagnostic sensitivity, and potential complications. We also compare EBUS-GS with other available diagnostic techniques and discuss the strengths and limitations of this method. PMID:29063872

Histogram-based quantitative evaluation of endobronchial ultrasonography images of peripheral pulmonary lesion.

PubMed

Morikawa, Kei; Kurimoto, Noriaki; Inoue, Takeo; Mineshita, Masamichi; Miyazawa, Teruomi

2015-01-01

Endobronchial ultrasonography using a guide sheath (EBUS-GS) is an increasingly common bronchoscopic technique, but currently, no methods have been established to quantitatively evaluate EBUS images of peripheral pulmonary lesions. The purpose of this study was to evaluate whether histogram data collected from EBUS-GS images can contribute to the diagnosis of lung cancer. Histogram-based analyses focusing on the brightness of EBUS images were retrospectively conducted: 60 patients (38 lung cancer; 22 inflammatory diseases), with clear EBUS images were included. For each patient, a 400-pixel region of interest was selected, typically located at a 3- to 5-mm radius from the probe, from recorded EBUS images during bronchoscopy. Histogram height, width, height/width ratio, standard deviation, kurtosis and skewness were investigated as diagnostic indicators. Median histogram height, width, height/width ratio and standard deviation were significantly different between lung cancer and benign lesions (all p < 0.01). With a cutoff value for standard deviation of 10.5, lung cancer could be diagnosed with an accuracy of 81.7%. Other characteristics investigated were inferior when compared to histogram standard deviation. Histogram standard deviation appears to be the most useful characteristic for diagnosing lung cancer using EBUS images. © 2015 S. Karger AG, Basel.

Effectiveness of the Benign and Malignant Diagnosis of Mediastinal and Hilar Lymph Nodes by Endobronchial Ultrasound Elastography.

PubMed

Huang, Haidong; Huang, Zhiang; Wang, Qin; Wang, Xinan; Dong, Yuchao; Zhang, Wei; Zarogoulidis, Paul; Man, Yan-Gao; Schmidt, Wolfgang Hohenforst; Bai, Chong

2017-01-01

Background and Objectives: Endobronchial ultrasound elastography is a new technique for describing the stiffness of tissue during endobronchial ultrasound-guided transbronchial needle aspiration (EBUS-TBNA). The aims of this study were to investigate the diagnostic value of Endobronchial ultrasound (EBUS) elastography for distinguishing the difference between benign and malignant lymph nodes among mediastinal and hilar lymph node. Materials and Methods: From June 2015 to August 2015, 47 patients confirmed of mediastinal and hilar lymph node enlargement through examination of Computed tomography (CT) were enrolled, and a total of 78 lymph nodes were evaluated by endobronchial ultrasound-guided transbronchial needle aspiration (EBUS-TBNA). EBUS-guided elastography of lymph nodes was performed prior to EBUS-TBNA. A convex probe EBUS was used with a new EBUS processor to assess elastographic patterns that were classified based on color distribution as follows: Type 1, predominantly non-blue (green, yellow and red); Type 2, part blue, part non-blue (green, yellow and red); Type 3, predominantly blue. Pathological determination of malignant or benign lymph nodes was used as the gold standard for this study. The elastographic patterns were compared with the final pathologic results from EBUS-TBNA. Results: On pathological evaluation of the lymph nodes, 45 were benign and 33 were malignant. The lymph nodes that were classified as Type 1 on endobronchial ultrasound elastography were benign in 26/27 (96.3%) and malignant in 1/27 (3.7%); for Type 2 lymph nodes, 15/20 (75.0%) were benign and 5/20 (25.0%) were malignant; Type 3 lymph nodes were benign in 4/31 (12.9%) and malignant in 27/31 (87.1%). In classifying Type 1 as 'benign' and Type 3 as 'malignant,' the sensitivity, specificity, positive predictive value, negative predictive value and diagnostic accuracy rates were 96.43%, 86.67%, 87.10%, 96.30%, 91.38%, respectively. Conclusion: EBUS elastography of mediastinal and hilar lymph nodes is a noninvasive technique that can be performed reliably and may be helpful in the prediction of benign and malignant lymph nodes among mediastinal and hilar lymph node during EBUS-TBNA.

Endobronchial ultrasound-guided transbronchial needle injection for local control of recurrent non-small cell lung cancer.

PubMed

Khan, Farrah; Anker, Christopher J; Garrison, Garth; Kinsey, C Matthew

2015-01-01

Endobronchial ultrasound-guided transbronchial needle aspiration (EBUS-TBNA) is an established technique for the diagnosis of thoracic malignancies. Non-ultrasound-guided transbronchial needle injection has been used previously to deliver chemotherapeutic agents. To use endobronchial ultrasound-guided transbronchial needle injection (EBUS-TBNI) to achieve local control of recurrent early-stage lung cancer. A 63-year-old man presented with recurrent early stage non-small cell lung carcinoma after chemotherapy and external beam radiation. We used EBUS-TBNI to deliver cisplatin into the tumor located outside the airway. This procedure was performed on three separate occasions without complication. EBUS-TBNI resulted in resolution of fluorodeoxyglucose avidity, measured by positron emission tomography-computed tomography, in the region at 4 weeks. However, at 5 months, there was evidence of distal recurrence. This is the first description of EBUS-TBNI to treat local recurrence of lung cancer and one of the first reports of the use of EBUS for intratumoral therapy. Additional research is warranted to determine the clinical usefulness and safety of this therapeutic approach.

Systematic Compared With Targeted Staging with Endobronchial Ultrasound in Patients with Lung Cancer.

PubMed

Sanz-Santos, José; Serra, Pere; Torky, Mohamed; Andreo, Felipe; Centeno, Carmen; Mendiluce, Leire; Martínez-Barenys, Carlos; López de Castro, Pedro; Ruiz-Manzano, Juan

2018-04-06

To evaluate the accuracy of systematic mediastinal staging by endobronchial ultrasound transbronchial needle aspiration (EBUS-TBNA) (sampling of all visible nodes measuring ≥5mm from stations N3 to N1 regardless of their positron emission tomography/computed tomography (PET/CT) features) and compare this staging approach with targeted EBUS-TBNA staging (sampling only 18F-fluorodeoxyglucose (FDG)-avid nodes) in patients with N2 non-small cell lung cancer (NSCLC) on PET/CT. Retrospective study of 107 patients who underwent systematic EBUS-TBNA mediastinal staging. The results were compared with those of a hypothetical scenario where only FDG-avid nodes on PET/CT would be sampled. Systematic EBUS-TBNA sampling demonstrated N3 disease in 3 patients, N2 disease in 60 (42 single-station or N2a, 18 multiple-station or N2b) and N0/N1 disease in 44. Of these 44, seven underwent mediastinoscopy, which did not show mediastinal disease; six of the seven proceeded to lung resection, which also showed no mediastinal disease. Thirty-four N0/N1 patients after EBUS-TBNA underwent lung resection directly: N0/N1 was found in 30 and N2 in four (one N2b with a PET/CT showing N2a disease, three N2a). Sensitivity, specificity, negative predictive value, positive predictive value, and overall accuracy of systematic EBUS-TBNA were 94%, 100%, 90%, 100% and 96%, respectively. Compared to targeted EBUS-TBNA, systematic EBUS-TBNA sampling provided additional important clinical information in 14 cases (13%): three N3 cases would have passed unnoticed, and 11 N2b cases would have been staged as N2a. In clinical practice, systematic sampling of the mediastinum by EBUS-TBNA, regardless of PET/CT features, is to be recommended over targeted sampling. Copyright © 2018. Published by Elsevier Inc.

Endobronchial ultrasound-guided transbronchial needle aspiration in the diagnosis of non-lymph node thoracic lesions

PubMed Central

Yang, Huizhen; Zhao, Heng; Garfield, David H.; Teng, Jiajun; Han, Baohui; Sun, Jiayuan

2013-01-01

AIMS: Endobronchial ultrasound-guided transbronchial needle aspiration (EBUS-TBNA) has shown excellent diagnostic capabilities for mediastinal and hilar lymphadenopathy. However, its value in thoracic non-lymph node lesions is less clear. This study was designed to assess the value of EBUS-TBNA in distinguishing malignant from benign thoracic non-lymph node lesions. METHODS: From October 2009 to August 2011, 552 patients underwent EBUS-TBNA under local anesthesia and with conscious sedation. We retrospectively reviewed 81 of these patients who had tracheobronchial wall-adjacent intrapulmonary or isolated mediastinal non-lymph node lesions. On-site cytological evaluation was not used. Immunohistochemistry (IHC) was performed to distinguish the origin or type of malignancy when necessary. RESULTS: EBUS-TBNA was performed in 68 tracheobronchial wall-adjacent intrapulmonary and 13 isolated mediastinal non-lymph node lesions. Of the 81 patients, 77 (95.1%, 60 malignancies and 17 benignancies) were diagnosed through EBUS-TBNA, including 57 primary lung cancers, 2 mediastinal tumors, 1 pulmonary metastatic adenocarcinoma, 7 inflammation, 5 tuberculosis, 3 mediastinal cysts, 1 esophageal schwannoma, and 1 focal fibrosis. There were four false-negative cases (4.9%). Of the 60 malignancies, there were 9 (15.0%) which originally had no definite histologic origin or type. Thus, IHC was performed, with 7 (77.8%) being subsequently confirmed. Sensitivity, specificity, positive predictive value, negative predictive value, and accuracy of EBUS-TBNA in distinguishing malignant from benign lesions were 93.4% (60/64), 100% (17/17), 100% (60/60), 81.0% (17/21), and 95.1% (77/81), respectively. CONCLUSION: EBUS-TBNA is a safe procedure with a high sensitivity for distinguishing malignant from benign thoracic non-lymph node lesions within the reach of EBUS-TBNA, with IHC usually providing a more definitive diagnosis. PMID:23439919

Utility and Safety of Endoscopic Ultrasound With Bronchoscope-Guided Fine-Needle Aspiration in Mediastinal Lymph Node Sampling: Systematic Review and Meta-Analysis.

PubMed

Dhooria, Sahajal; Aggarwal, Ashutosh N; Gupta, Dheeraj; Behera, Digambar; Agarwal, Ritesh

2015-07-01

The use of endoscopic ultrasound with bronchoscope-guided fine-needle aspiration (EUS-B-FNA) has been described in the evaluation of mediastinal lymphadenopathy. Herein, we conduct a meta-analysis to estimate the overall diagnostic yield and safety of EUS-B-FNA combined with endobronchial ultrasound-guided transbronchial needle aspiration (EBUS-TBNA), in the diagnosis of mediastinal lymphadenopathy. The PubMed and EmBase databases were searched for studies reporting the outcomes of EUS-B-FNA in diagnosis of mediastinal lymphadenopathy. The study quality was assessed using the QualSyst tool. The yield of EBUS-TBNA alone and the combined procedure (EBUS-TBNA and EUS-B-FNA) were analyzed by calculating the sensitivity, specificity, positive likelihood ratio, negative likelihood ratio, and diagnostic odds ratio for each study, and pooling the study results using a random effects model. Heterogeneity and publication bias were assessed for individual outcomes. The additional diagnostic gain of EUS-B-FNA over EBUS-TBNA was calculated using proportion meta-analysis. Our search yielded 10 studies (1,080 subjects with mediastinal lymphadenopathy). The sensitivity of the combined procedure was significantly higher than EBUS-TBNA alone (91% vs 80%, P = .004), in staging of lung cancer (4 studies, 465 subjects). The additional diagnostic gain of EUS-B-FNA over EBUS-TBNA was 7.6% in the diagnosis of mediastinal adenopathy. No serious complication of EUS-B-FNA procedure was reported. Clinical and statistical heterogeneity was present without any evidence of publication bias. Combining EBUS-TBNA and EUS-B-FNA is an effective and safe method, superior to EBUS-TBNA alone, in the diagnosis of mediastinal lymphadenopathy. Good quality randomized controlled trials are required to confirm the results of this systematic review. Copyright © 2015 by Daedalus Enterprises.

Use of an Additional 19-G EBUS-TBNA Needle Increases the Diagnostic Yield of EBUS-TBNA.

PubMed

Garrison, Garth; Leclair, Timothy; Balla, Agnes; Wagner, Sarah; Butnor, Kelly; Anderson, Scott R; Kinsey, C Matthew

2018-06-12

Although endobronchial ultrasound-guided transbronchial needle aspiration (EBUS-TBNA) has an excellent diagnostic yield, there remain cases where the diagnosis is not obtained. We hypothesized that additional sampling with a 19-G EBUS-TBNA needle may increase diagnostic yield in a subset of cases where additional tissue sampling was required. Indications for use of the 19-G needle following 22-G sampling with rapid on-site cytologic examination were: (1) diagnostic uncertainty of the on-site cytopathologist (eg, nondiagnostic, probable lymphoma, etc.), (2) non-small cell lung cancer with probable need for molecular genetic and/or PD-L1 testing, or (3) need for a larger tissue sample for consideration of inclusion in a research protocol. A 19-G EBUS-TBNA needle was utilized following standard sampling with a 22-G needle in 48 patients (50 sites) during the same procedure. Although the diagnostic yield between the needles was equivalent, the concordance rate was only 83%. The 19-G determined a diagnosis in 4 additional patients (8%) and provided additional histopathologic information in 6 other cases (12%). Conversely, in 3 cases (6%) diagnostic information was provided only by the 22-G needle. Compared with 22-G EBUS-TBNA alone, sampling with both the 22- and 19-G EBUS needles resulted in an increase in diagnostic yield from 92% to 99% (P=0.045) and a number needed to sample of 13 patients to provide one additional diagnosis. There were no significant complications. In select cases where additional tissue may be needed, sampling with a 19-G EBUS needle following standard aspiration with a 22-G needle results in an increase in diagnostic yield.

A mass that has no (EBUS) echo.

PubMed

Rosenblum, Matthew K; Wang, Sue X; Seeley, Eric J

2018-01-01

We report findings for a patient that underwent endobronchial ultrasound (EBUS) guided transbronchial needle aspiration (TBNA) for diagnostic purposes after an abnormal chest CT. The patient initially presented with cough and shortness of breath. Chest CT revealed a 6 cm soft tissue mass with mildly enlarged right hilar lymph nodes (LNs) and a small right sided pleural effusion. Based on these radiologic findings, the patient underwent an EBUS guided FNA of the mass. To our surprise, the mass was hypoechoic by EBUS and on aspiration, the syringe filled with yellow fluid. This finding in combination with a re-review of the CT scans with a special focus on the Hounsfield Units of the lesion confirmed the diagnosis of a mediastinal bronchogenic cyst. This case demonstrates the role of Hounsfield units in analyzing mediastinal masses and highlights the effectiveness of EBUS guided TBNA in diagnosis and treatment of bronchogenic cysts.

Endobronchial Ultrasound (EBUS) - Update 2017.

PubMed

Darwiche, Kaid; Özkan, Filiz; Wolters, Celina; Eisenmann, Stephan

2018-02-01

Endobronchial ultrasound (EBUS) has revolutionized the diagnosis of lung cancer over the last decade. This minimally invasive diagnostic method has also become increasingly important in the case of other diseases such as sarcoidosis, thereby helping to avoid unnecessary diagnostic interventions. This review article provides an update regarding EBUS and discusses current and future developments of this method. © Georg Thieme Verlag KG Stuttgart · New York.

Comparison of Epidermal Growth Factor Receptor Mutations between Metastatic Lymph Node Diagnosed by EBUS-TBNA and Primary Tumor in Non-Small Cell Lung Cancer

PubMed Central

Kang, Hyo Jae; Hwangbo, Bin; Lee, Jin Soo; Kim, Moon Soo; Lee, Jong Mog; Lee, Geon-Kook

2016-01-01

Introduction Although the use of endobronchial ultrasound-guided transbronchial needle aspiration (EBUS-TBNA) is increasing for epidermal growth factor receptor (EGFR) testing in lung cancer, the discordance rate in EGFR mutations between lymph node (LN) samples obtained by EBUS-TBNA and primary tumor (PT) is not well known. Thus, we compared the EGFR mutation status of LN samples obtained by EBUS-TBNA and PTs to estimate the efficacy of using EBUS-TBNA specimens for EGFR testing in advanced, non-squamous, non-small cell lung cancer (NSCLC). Materials and Methods Using data of patients from the EBUS-TBNA database (N = 1914) obtained between January 2009 and January 2013, we identified 100 treatment-naïve, advanced, non-squamous NSCLC patients (stage 3 and 4) with matched LN specimens obtained by EBUS-TBNA and PT specimens. Of these, 74 patients with paired specimens were feasible for EGFR mutation analysis, which we performed using a direct sequencing method. Results Of the 74 cases, at least one major [exon 19 deleted (19del) and L858R] or minor (T790M, exon 20 insertion, and other point mutations) EGFR mutation was detected in 31 cases (41.9%), which included PT (n = 31, 41.9%) and LN (n = 28, 37.8%) specimens. Major mutations were detected in 25 PT (33.8%, 19del = 13, L858R = 12) and 22 LN (29.8%, 19del = 11, L858R = 11) specimens. The discordance rate in major mutations between matched PT and LN specimens was 4.1% (3/74). Among minor mutations, T790M was detected in LN specimen only in 2 cases with L858R in PT and LN. The discordance rate major and minor EGFR mutations combined between matched PT and LN specimens was 12% (9/74). Conclusions We observed a high concordance rate of major EGFR mutations between matched LN specimens sampled by EBUS-TBNA and PTs, suggesting that LN samples obtained by EBUS-TBNA from advanced non-squamous NSCLC patients are effective for use in EGFR mutation testing. PMID:27685950

Mediastinal abscess after endobronchial ultrasound-guided transbronchial needle aspiration: a case report and literature review.

PubMed

Leong, Steven C; Marshall, Henry M; Bint, Michael; Yang, Ian A; Bowman, Rayleen V; Fong, Kwun M

2013-10-01

Endobronchial ultrasound-guided transbronchial needle aspiration (EBUS-TBNA) is a minimally invasive technique that allows lung cancer nodal staging and biopsy of parabronchial and paratracheal tissue. Its simplicity, high diagnostic yield, ability to diagnose both benign and malignant conditions, and exceedingly low complication rate has resulted in rapid widespread adoption by surgeons and physicians. EBUS-TBNA-related complications, however, do occur and need to be considered when assessing the risk-benefit profile of performing the procedure, and if the patient represents with unexpected symptoms after the procedure. We describe a 64-year-old woman who presented with a mediastinal abscess 5 days after EBUS-TBNA. This case demonstrates the importance of considering EBUS-TBNA-related complications to guide relevant imaging decisions and antibiotic choices. We review the published literature regarding infective complications of EBUS-TBNA and propose possible pathophysiologies. These complications are likely to increase in frequency as the technique is more widely adopted.

Evolution of a rapid onsite evaluation (ROSE) service for endobronchial ultrasound guided (EBUS) fine needle aspiration (FNA) cytology in a UK Hospital: A 7 year audit.

PubMed

Stevenson, Tracey; Powari, Manish; Bowles, Christopher

2018-05-13

Endobronchial ultrasound fine needle aspiration (EBUS FNA) is a well-established procedure for the diagnosis and staging of lung cancer. We review our provision of this service at the Royal Devon and Exeter NHS Foundation Trust and the role of rapid onsite evaluation (ROSE) with the increasing demand for molecular markers in this era of personalized medicine. A review of the changes in the Endoscopy clinic over the 7 years from the introduction of EBUS at the end of 2010 until 2017 was carried out. This included the availability of material obtained for diagnosis, accurate subtyping, and molecular testing. We also assessed the success of molecular genetics DNA techniques from EBUS material versus formalin fixed paraffin embedded tissue (FFPE). A total of 1218 EBUS cases with ROSE were reported between 2011 and 2017 Percentage diagnostic rates were calculated as 83, 82, 84, 92, 93, 94, and 92 for 2011, 2012, 2013, 2014, 2015, 2016, and 2017, respectively. Availability of material for immunocytochemistry ranged from 86 to 100% over the 7 years. Molecular testing was successfully performed for EGFR in 89-100% of requested cases and ALK testing in 87-100% of requested cases. EBUS sourced material gave on average twice the amount of DNA and fewer amplicon repeats per patient compared to FFPE material. ROSE at EBUS FNA provides access to suitable material for molecular testing with increased yields in the form of needle washings for EGFR with FFPE materials for ALK and PDL1 testing. © 2018 Wiley Periodicals, Inc.

Endobronchial Ultrasound-guided Transbronchial Needle Aspiration versus Standard Bronchoscopic Modalities for Diagnosis of Sarcoidosis: A Meta-analysis

PubMed Central

Hu, Li-Xing; Chen, Ru-Xuan; Huang, Hui; Shao, Chi; Wang, Ping; Liu, Yong-Zhe; Xu, Zuo-Jun

2016-01-01

Background: Endobronchial ultrasound-guided transbronchial needle aspiration (EBUS-TBNA) is an effective technique used to precisely detect enlarged mediastinal lymph nodes. The efficacy of EBUS-TBNA versus standard modalities for the diagnosis of sarcoidosis remains to be elucidated. In this meta-analysis, we compared the efficacies of these methods. Methods: We searched PubMed, Embase, The Cochrane Library, Wanfang, Cpvip, CNKI, and the bibliographies of the relevant references. We analyzed the data obtained with Revman 5.2 (Nordic Cochrane Center, Copenhagen, Denmark) and Stata 12.0 software (Stata Corporation, College Station, TX, USA). The Mantel-Haenszel method was used to calculate the pooled odds ratio (OR) and 95% confidence intervals (CIs). Results: Sixteen studies with a total of 1823 participants met the inclusion criteria, and data were extracted regarding the diagnostic yield of each approach. The ORs for EBUS-TBNA versus transbronchial lung biopsy (TBLB) for the diagnosis of sarcoidosis ranged from 0.26 to 126.58, and the pooled OR was 5.89 (95% CI, 2.20–15.79, P = 0.0004). These findings indicated that EBUS-TBNA provided a much higher diagnostic yield than TBLB. The pooled OR for EBUS-TBNA + TBLB + endobronchial biopsy (EBB) versus TBNA + TBLB + EBB was 1.54 (95% CI, 0.61–3.93, P = 0.36), implying that there was no significant difference between their diagnostic yields. However, clinical heterogeneity was reflected in the nature of the studies and in the operative variables. Conclusions: The results of this meta-analysis suggest that EBUS-TBNA + TBLB + EBB could be used for the diagnosis of sarcoidosis, if available. At medical centers without EBUS-TBNA, TBNA + TBLB + EBB could be used instead. PMID:27364799

Technical Aspects of Endobronchial Ultrasound-Guided Transbronchial Needle Aspiration: CHEST Guideline and Expert Panel Report.

PubMed

Wahidi, Momen M; Herth, Felix; Yasufuku, Kazuhiro; Shepherd, Ray Wesley; Yarmus, Lonny; Chawla, Mohit; Lamb, Carla; Casey, Kenneth R; Patel, Sheena; Silvestri, Gerard A; Feller-Kopman, David J

2016-03-01

Endobronchial ultrasound (EBUS) was introduced in the last decade, enabling real-time guidance of transbronchial needle aspiration (TBNA) of mediastinal and hilar structures and parabronchial lung masses. The many publications produced about EBUS-TBNA have led to a better understanding of the performance characteristics of this procedure. The goal of this document was to examine the current literature on the technical aspects of EBUS-TBNA as they relate to patient, technology, and proceduralist factors to provide evidence-based and expert guidance to clinicians. Rigorous methodology has been applied to provide a trustworthy evidence-based guideline and expert panel report. A group of approved panelists developed key clinical questions by using the PICO (population, intervention, comparator, and outcome) format that addressed specific topics on the technical aspects of EBUS-TBNA. MEDLINE (via PubMed) and the Cochrane Library were systematically searched for relevant literature, which was supplemented by manual searches. References were screened for inclusion, and well-recognized document evaluation tools were used to assess the quality of included studies, to extract meaningful data, and to grade the level of evidence to support each recommendation or suggestion. Our systematic review and critical analysis of the literature on 15 PICO questions related to the technical aspects of EBUS-TBNA resulted in 12 statements: 7 evidence-based graded recommendations and 5 ungraded consensus-based statements. Three questions did not have sufficient evidence to generate a statement. Evidence on the technical aspects of EBUS-TBNA varies in strength but is satisfactory in certain areas to guide clinicians on the best conditions to perform EBUS-guided tissue sampling. Additional research is needed to enhance our knowledge regarding the optimal performance of this effective procedure. Copyright © 2016 American College of Chest Physicians. Published by Elsevier Inc. All rights reserved.

True negative predictive value of endobronchial ultrasound in lung cancer: are we being conservative enough?

PubMed

Whitson, Bryan A; Groth, Shawn S; Odell, David D; Briones, Eleazar P; Maddaus, Michael A; D'Cunha, Jonathan; Andrade, Rafael S

2013-05-01

Mediastinal staging in patients with non-small cell lung cancer (NSCLC) with endobronchial ultrasound-guided fine-needle aspiration (EBUS-FNA) requires a high negative predictive value (NPV) (ie, low false negative rate). We provide a conservative calculation of NPV that calls for caution in the interpretation of EBUS results. We retrospectively analyzed our prospectively gathered database (January 2007 to November 2011) to include NSCLC patients who underwent EBUS-FNA for mediastinal staging. We excluded patients with metastatic NSCLC and other malignancies. We assessed FNAs with rapid on-site evaluation (ROSE). The calculation of NPV is NPV = true negatives/true negatives + false negatives. However, this definition ignores nondiagnostic samples. Nondiagnostic samples should be added to the NPV denominator because decisions based on nondiagnostic samples could be flawed. We conservatively calculated NPV for EBUS-FNA as NPV = true negatives/true negatives + false negatives + nondiagnostic. We defined false negatives as negative FNAs but NSCLC-positive surgical biopsy of the same site. Nondiagnostic FNAs were nonrepresentative of lymphoid tissue. We compared diagnostic performance with the inclusion and exclusion of nondiagnostic procedures. We studied 120 patients with NSCLC who underwent EBUS-FNA; 5 patients had false negative findings and 10 additional patients had nondiagnostic results. The NPV with and without inclusion of nondiagnostic samples was 65.9% and 85.3%, respectively. The inclusion of nondiagnostic specimens into the conservative, worst-case-scenario calculation of NPV for EBUS-FNA in NSCLC lowers the NPV from 85.3% to 65.9%. The true NPV is likely higher than 65.9% as few nondiagnostic specimens are false negatives. Caution is imperative for the safe application of EBUS-FNA in NSCLC staging. Copyright © 2013 The Society of Thoracic Surgeons. Published by Elsevier Inc. All rights reserved.

Diagnostic yield of endobronchial ultrasound-guided transbronchial needle aspiration for mediastinal staging in lung cancer*

PubMed Central

Fernández-Bussy, Sebastián; Labarca, Gonzalo; Canals, Sofia; Caviedes, Iván; Folch, Erik; Majid, Adnan

2015-01-01

OBJECTIVE: Endobronchial ultrasound-guided transbronchial needle aspiration (EBUS-TBNA) is a minimally invasive diagnostic test with a high diagnostic yield for suspicious central pulmonary lesions and for mediastinal lymph node staging. The main objective of this study was to describe the diagnostic yield of EBUS-TBNA for mediastinal lymph node staging in patients with suspected lung cancer. METHODS: Prospective study of patients undergoing EBUS-TBNA for diagnosis. Patients ≥ 18 years of age were recruited between July of 2010 and August of 2013. We recorded demographic variables, radiological characteristics provided by axial CT of the chest, location of the lesion in the mediastinum as per the International Association for the Study of Lung Cancer classification, and definitive diagnostic result (EBUS with a diagnostic biopsy or a definitive diagnostic method). RESULTS: Our analysis included 354 biopsies, from 145 patients. Of those 145 patients, 54.48% were male. The mean age was 63.75 years. The mean lymph node size was 15.03 mm, and 90 lymph nodes were smaller than 10.0 mm. The EBUS-TBNA method showed a sensitivity of 91.17%, a specificity of 100.0%, and a negative predictive value of 92.9%. The most common histological diagnosis was adenocarcinoma. CONCLUSIONS: EBUS-TBNA is a diagnostic tool that yields satisfactory results in the staging of neoplastic mediastinal lesions. PMID:26176519

Impact of Rapid On-Site Cytological Evaluation (ROSE) on the Diagnostic Yield of Transbronchial Needle Aspiration During Mediastinal Lymph Node Sampling: Systematic Review and Meta-Analysis.

PubMed

Sehgal, Inderpaul Singh; Dhooria, Sahajal; Aggarwal, Ashutosh Nath; Agarwal, Ritesh

2018-04-01

Whether the use of rapid on-site cytologic evaluation (ROSE) increases the diagnostic yield of transbronchial needle aspiration (TBNA) remains unclear. This article is a systematic review of studies describing the utility of ROSE in subjects undergoing TBNA. The study included a systematic review of the PubMed, Embase, and Scopus databases for randomized controlled trials investigating the diagnostic yield of conventional transbronchial needle aspiration (c-TBNA) or endobronchial ultrasound (EBUS)-TBNA, with or without ROSE, in subjects with mediastinal lymphadenopathy. Five studies (618 subjects; two EBUS-TBNA, two c-TBNA, and one both) were identified. Overall, the studies were of good quality. The pooled risk difference (95% CI) of the diagnostic yield of EBUS-TBNA and c-TBNA was 0.04 (-0.01 to 0.09) and 0.12 (-0.08 to 0.33), respectively, suggesting no added benefit with ROSE. The use of ROSE during EBUS-TBNA (but not c-TBNA) resulted in significantly fewer needle passes (mean difference [95% CI], -1.1 [-2.2 to -0.005]; P < .001). There was no difference in the procedure time during EBUS-TBNA. The complication rate was significantly lower (OR [95% CI], 0.26 [0.10 to 0.71]; P = .009) when ROSE was used during c-TBNA due to fewer additional procedures required to make a diagnosis. There was evidence of heterogeneity in the studies involving c-TBNA but not EBUS-TBNA. There was no publication bias. The use of ROSE neither improved the diagnostic yield nor reduced the procedure time during TBNA. However, the use of ROSE was associated with fewer number of needle passes during EBUS-TBNA and overall lower requirement for additional bronchoscopy procedures during TBNA to make a final diagnosis. PROSPERO; No.: CRD42017058937; URL: www.crd.york.ac.uk/prospero/. Copyright © 2017 American College of Chest Physicians. Published by Elsevier Inc. All rights reserved.

Molecular Nodal Staging Using miRNA Expression in Lung Cancer Patients by Endobronchial Ultrasound-Guided Transbronchial Needle Aspiration.

PubMed

Inage, Terunaga; Nakajima, Takahiro; Itoga, Sakae; Ishige, Takayuki; Fujiwara, Taiki; Sakairi, Yuichi; Wada, Hironobu; Suzuki, Hidemi; Iwata, Takekazu; Chiyo, Masako; Yoshida, Shigetoshi; Matsushita, Kazuyuki; Yasufuku, Kazuhiro; Yoshino, Ichiro

2018-06-13

The limited negative predictive value of endobronchial ultrasound-guided transbronchial needle aspiration (EBUS-TBNA) has often been discussed. The aim of this study was to identify a highly sensitive molecular biomarker for lymph node staging by EBUS-TBNA. Five microRNAs (miRNAs) (miR-200a, miR-200b, miR-200c, miR-141, and let-7e) were selected as biomarker candidates for the detection of nodal metastasis in a miRNA expression analysis. After having established a cutoff level of expression for each marker to differentiate malignant from benign lymph nodes among surgically dissected lymph nodes, the cutoff level was applied to snap-frozen EBUS-TBNA samples. Archived formalin-fixed paraffin- embedded (FFPE) samples rebiopsied by EBUS-TBNA after induction chemoradiotherapy were also analyzed. The expression of all candidate miRNAs was significantly higher in metastatic lymph nodes than in benign ones (p < 0.05) among the surgical samples. miR-200c showed the highest diagnostic yield, with a sensitivity of 95.4% and a specificity of 100%. When the cutoff value for miR-200c was applied to the snap-frozen EBUS-TBNA samples, the sensitivity, specificity, positive predictive value, negative predictive value, and diagnostic accuracy were 97.4, 81.8, 95.0, 90.0, and 94.0%, respectively. For restaging FFPE EBUS- TBNA samples, the sensitivity, specificity, positive predictive value, negative predictive value, and diagnostic accuracy were 100, 60.0, 80.0, 100, and 84.6%, respectively. Among the restaged samples, 4 malignant lymph nodes were false negative by EBUS-TBNA, but they were accurately identified by miR-200c. miR-200c can be used as a highly sensitive molecular staging biomarker that will enhance nodal staging of lung cancer. © 2018 S. Karger AG, Basel.

Endobronchial Ultrasound in Suspected Non-Malignant Mediastinal Lymphadenopathy.

PubMed

Eickhoff, L; Golpon, H; Zardo, P; Suhling, H; Welte, T; Jonigk, D; Gottlieb, J; Fuehner, T

2018-05-22

 Endobronchial ultrasound (EBUS) bronchoscopy with transbronchial needle aspiration (TBNA) is a well-established tool in mediastinal staging in lung cancer and gains importance in exploration of non-malignant lymphadenopathy. The aim of this study was to evaluate the role of EBUS-TBNA in suspected non-malignant diseases.  A retrospective, single-center, observation analysis of endobronchial ultrasound bronchoscopy procedures was performed in a university medical center between March 2013 and July 2015. All patients with suspected non-malignant mediastinal lymphadenopathy were included. Cytopathological and microbiological results of EBUS were compared to clinical diagnosis 6 months after procedure and performance of EBUS was contrasted to malignant indications.  During study period, 333 EBUS bronchoscopies in 315 patients with mediastinal lymphadenopathy were performed. 111 out of 315 (35 %) patients had neither primary signs nor history of a malignant disease, categorised as patients with suspected non-malignant disease. 245 lymph nodes were sampled (median size 15 mm [IQR10 - 19]). Preferred station for TBNA was lymph node station 7 (38 %). Cytopathological findings revealed non-specific inflammation (n = 81; 70 %), carcinoma (n = 7; 6 %), epithelioid cell granulomas (n = 20; 17 %). 7 samples (6 %) were non-representative. Microbiologic testing of lymph nodes identified 3 infections (Mycobacteria tuberculosis [n = 2] and Nocardia nova [n = 1]) relevant to antibiotic therapy. Minor adverse events were observed in 9 out of 115 (8 %) patients. Sensitivity of EBUS-TBNA intervention in suspected non-malignant disease was 76 % and specificity 96 %.  EBUS-TBNA revealed a specific cause for suspected non-malignant lymphadenopathy in one-third of cases and was associated with excellent specificity. Predominant specific causes were granuloma, besides from tumor. In 3 patients pathogen could be isolated by TBNA. © Georg Thieme Verlag KG Stuttgart · New York.

Novel hybrid cryo-radial method: an emerging alternative to CT-guided biopsy in suspected lung cancer. A prospective case series and description of technique.

PubMed

Herath, Samantha; Yap, Elaine

2018-02-01

In diagnosing peripheral pulmonary lesions (PPL), radial endobronchial ultrasound (R-EBUS) is emerging as a safer method in comparison to CT-guided biopsy. Despite the better safety profile, the yield of R-EBUS remains lower (73%) than CT-guided biopsy (90%) due to the smaller size of samples. We adopted a hybrid method by adding cryobiopsy via the R-EBUS Guide Sheath (GS) to produce larger, non-crushed samples to improve diagnostic capability and enhance molecular testing. We report six prospective patients who underwent this procedure in our institution. R-EBUS samples were obtained via conventional sampling methods (needle aspiration, forceps biopsy, and cytology brush), followed by a cryobiopsy. An endobronchial blocker was placed near the planned area of biopsy in advance and inflated post-biopsy to minimize the risk of bleeding in all patients. A chest X-ray was performed 1 h post-procedure. All the PPLs were visualized with R-EBUS. The mean diameter of cryobiopsy samples was twice the size of forceps biopsy samples. In four patients, cryobiopsy samples were superior in size and the number of malignant cells per high power filed and was the preferred sample selected for mutation analysis and molecular testing. There was no pneumothorax or significant bleeding to report. Cryobiopsy samples were consistently larger and were the preferred samples for molecular testing, with an increase in the diagnostic yield and reduction in the need for repeat procedures, without hindering the marked safety profile of R-EBUS. Using an endobronchial blocker improves the safety of this procedure.

Novel hybrid cryo‐radial method: an emerging alternative to CT‐guided biopsy in suspected lung cancer. A prospective case series and description of technique

PubMed Central

Yap, Elaine

2017-01-01

In diagnosing peripheral pulmonary lesions (PPL), radial endobronchial ultrasound (R‐EBUS) is emerging as a safer method in comparison to CT‐guided biopsy. Despite the better safety profile, the yield of R‐EBUS remains lower (73%) than CT‐guided biopsy (90%) due to the smaller size of samples. We adopted a hybrid method by adding cryobiopsy via the R‐EBUS Guide Sheath (GS) to produce larger, non‐crushed samples to improve diagnostic capability and enhance molecular testing. We report six prospective patients who underwent this procedure in our institution. R‐EBUS samples were obtained via conventional sampling methods (needle aspiration, forceps biopsy, and cytology brush), followed by a cryobiopsy. An endobronchial blocker was placed near the planned area of biopsy in advance and inflated post‐biopsy to minimize the risk of bleeding in all patients. A chest X‐ray was performed 1 h post‐procedure. All the PPLs were visualized with R‐EBUS. The mean diameter of cryobiopsy samples was twice the size of forceps biopsy samples. In four patients, cryobiopsy samples were superior in size and the number of malignant cells per high power filed and was the preferred sample selected for mutation analysis and molecular testing. There was no pneumothorax or significant bleeding to report. Cryobiopsy samples were consistently larger and were the preferred samples for molecular testing, with an increase in the diagnostic yield and reduction in the need for repeat procedures, without hindering the marked safety profile of R‐EBUS. Using an endobronchial blocker improves the safety of this procedure. PMID:29321931

Utility and safety of endobronchial ultrasound-guided transbronchial needle aspiration in patients with mediastinal and hilar lymphadenopathy: Western region experience.

PubMed

Aljohaney, Ahmed A

2018-01-01

The aim of the study was to evaluate the clinical utility and safety of endobronchial ultrasound-guided transbronchial needle aspiration (EBUS-TBNA) in patients with mediastinal and hilar lymphadenopathy and to explicitly describe the utility of this procedure in patient's outcome. A retrospective review and analysis was conducted on 52 patients with mediastinal or hilar lymphadenopathy who underwent EBUS-TBNA from June 2012 to June 2016. All the patients were evaluated by computed tomography (CT) chest with contrast before EBUS examination. Enlarged mediastinal or hilar lymph node was defined as >1 cm short axis on the enhanced CT. Among the 52 patients studied, 57.7% were presented with mediastinal or hilar lymphadenopathy for diagnosis and 42.3% presented with suspected mediastinal malignancy. Paratracheal stations were the most common site for puncture in 33 lymph nodes (43%). The best diagnostic yield was obtained from subcarinal stations and the lowest yield from the hilar stations. Surgical biopsies confirmed lymphoma in six patients, tuberculosis (TB) in three, sarcoidosis in two and one had metastatic adenocarcinoma of unknown primary. The sensitivity, specificity, positive predictive value, and negative predictive value of EBUS-TBNA for diagnosis of mediastinal and hilar lymph node abnormalities were 78.6%, 100%, 100%, and 80%, respectively. The diagnostic yield of EBUS-TBNA in malignant and benign conditions was 79.0%. EBUS-TBNA is a safe and efficacious procedure which can be performed using conscious sedation with high yields. It can be used for the staging of malignancies as well as for the diagnosis of inflammatory and infectious conditions such as sarcoidosis and TB.

Utility of conventional transbronchial needle aspiration with rapid on-site evaluation (c-TBNA-ROSE) at a tertiary care center with endobronchial ultrasound (EBUS) facility

PubMed Central

Madan, Neha Kawatra; Madan, Karan; Jain, Deepali; Walia, Ritika; Mohan, Anant; Hadda, Vijay; Mathur, Sandeep; Iyer, Venkateswaran K; Khilnani, Gopi C; Guleria, Randeep

2016-01-01

Background: Conventional transbronchial needle aspiration (c-TBNA) is an underutilized bronchoscopic modality. Endobronchial ultrasound (EBUS) guided-TBNA though efficacious is an expensive modality, facilities of which are available at only limited centers. c-TBNA is cost-effective and has potential for wide utilization especially in resource-limited settings. Rapid on-site evaluation (ROSE) improves the yield of c-TBNA. Materials and Methods: A retrospective review of the bronchoscopy records (May 2012 to July 2014) was performed. The patients who underwent c-TBNA with ROSE were included in the study and their clinical details were extracted. Convex probe EBUS-TBNA was being regularly performed during the study period by the operators performing c-TBNA. Results: c-TBNA with ROSE was performed in 41 patients with mean age of 42.4 (16.2) years. The most frequently sampled node stations (>90% patients) were the subcarinal and lower right paratracheal. Representative samples could be obtained in 33 out of the 41 patients (80.4%). c-TBNA was diagnostic in 32 [tuberculosis (TB)-8, sarcoidosis-9, and malignancy-15] patients out of the 41 patients. The overall diagnostic yield (sensitivity) of c-TBNA with ROSE was 78%. Mean procedure duration was 18.4 (3.1) min and there were no procedural complications. Conclusion: c-TBNA with ROSE is a safe, efficacious, and cost-effective bronchoscopic modality. When it was performed by operators routinely performing EBUS-TBNA, diagnostic yields similar to that of EBUS-TBNA can be obtained. Even at the centers where EBUS facilities are available, c-TBNA should be routinely performed. PMID:27011437

Greater physician involvement improves coding outcomes in endobronchial ultrasound-guided transbronchial needle aspiration procedures.

PubMed

Pillai, Anilkumar; Medford, Andrew R L

2013-01-01

Correct coding is essential for accurate reimbursement for clinical activity. Published data confirm that significant aberrations in coding occur, leading to considerable financial inaccuracies especially in interventional procedures such as endobronchial ultrasound-guided transbronchial needle aspiration (EBUS-TBNA). Previous data reported a 15% coding error for EBUS-TBNA in a U.K. service. We hypothesised that greater physician involvement with coders would reduce EBUS-TBNA coding errors and financial disparity. The study was done as a prospective cohort study in the tertiary EBUS-TBNA service in Bristol. 165 consecutive patients between October 2009 and March 2012 underwent EBUS-TBNA for evaluation of unexplained mediastinal adenopathy on computed tomography. The chief coder was prospectively electronically informed of all procedures and cross-checked on a prospective database and by Trust Informatics. Cost and coding analysis was performed using the 2010-2011 tariffs. All 165 procedures (100%) were coded correctly as verified by Trust Informatics. This compares favourably with the 14.4% coding inaccuracy rate for EBUS-TBNA in a previous U.K. prospective cohort study [odds ratio 201.1 (1.1-357.5), p = 0.006]. Projected income loss was GBP 40,000 per year in the previous study, compared to a GBP 492,195 income here with no coding-attributable loss in revenue. Greater physician engagement with coders prevents coding errors and financial losses which can be significant especially in interventional specialties. The intervention can be as cheap, quick and simple as a prospective email to the coding team with cross-checks by Trust Informatics and against a procedural database. We suggest that all specialties should engage more with their coders using such a simple intervention to prevent revenue losses. Copyright © 2013 S. Karger AG, Basel.

Training and certification in endobronchial ultrasound-guided transbronchial needle aspiration

PubMed Central

Konge, Lars; Nayahangan, Leizl Joy; Clementsen, Paul Frost

2017-01-01

Endobronchial ultrasound-guided transbronchial needle aspiration (EBUS-TBNA) plays a key role in the staging of lung cancer, which is crucial for allocation to surgical treatment. EBUS-TBNA is a complicated procedure and simulation-based training is helpful in the first part of the long learning curve prior to performing the procedure on actual patients. New trainees should follow a structured training programme consisting of training on simulators to proficiency as assessed with a validated test followed by supervised practice on patients. The simulation-based training is superior to the traditional apprenticeship model and is recommended in the newest guidelines. EBUS-TBNA and oesophageal ultrasound-guided fine needle aspiration (EUS-FNA or EUS-B-FNA) are complementary to each other and the combined techniques are superior to either technique alone. It is logical to learn and to perform the two techniques in combination, however, for lung cancer staging solely EBUS-TBNA simulators exist, but hopefully in the future simulation-based training in EUS will be possible. PMID:28840013

Complications associated with endobronchial ultrasound-guided transbronchial needle aspiration: a nationwide survey by the Japan Society for Respiratory Endoscopy.

PubMed

Asano, Fumihiro; Aoe, Motoi; Ohsaki, Yoshinobu; Okada, Yoshinori; Sasada, Shinji; Sato, Shigeki; Suzuki, Eiichi; Semba, Hiroshi; Fukuoka, Kazuya; Fujino, Shozo; Ohmori, Kazumitsu

2013-05-10

With the recent widespread use of endobronchial ultrasound-guided transbronchial needle aspiration (EBUS-TBNA), there have been occasional reports on complications associated with its use. Previous reviews on EBUS-TBNA have been limited to studies by skilled operators, thus the results may not always be applicable to recent clinical practice. To assess the safety of EBUS-TBNA for the staging and diagnosis of lung cancer in Japan, a nationwide survey on its current usage status and complications associated with its use was conducted by the Japan Society for Respiratory Endoscopy (JSRE). A questionnaire about EBUS-TBNA performed between January 2011 and June 2012 was mailed to 520 JSRE-accredited facilities. Responses were obtained from 455 facilities (87.5%). During the study period, EBUS-TBNA was performed in 7,345 cases in 210 facilities (46.2%) using a convex probe ultrasound bronchoscope, for 6,836 mediastinal and hilar lesions and 275 lung parenchymal lesions. Ninety complications occurred in 32 facilities. The complication rate was 1.23% (95% confidence interval, 0.97%-1.48%), with hemorrhage being the most frequent complication (50 cases, 0.68%). Infectious complications developed in 14 cases (0.19%) (Mediastinitis, 7; pneumonia, 4; pericarditis, 1; cyst infection, 1; and sepsis, 1). Pneumothorax developed in 2 cases (0.03%), one of which required tube drainage. Regarding the outcome of the cases with complications, prolonged hospitalization was observed in 14 cases, life-threatening conditions in 4, and death in 1 (severe cerebral infarction) (mortality rate, 0.01%). Breakage of the ultrasound bronchoscope occurred in 98 cases (1.33%) in 67 facilities (31.9%), and that of the puncture needle in 15 cases (0.20%) in 8 facilities (3.8%). Although the complication rate associated with EBUS-TBNA was found to be low, severe complications, including infectious complications, were observed, and the incidence of device breakage was high. Since the use of EBUS-TBNA is rapidly expanding in Japan, an educational program for its safe performance should be immediately established.

Mediastinal Adenopathy in India: Through the Eyes of Endobranchial Ultrasound.

PubMed

Dhamija, Amit; Basu, Arup; Sharma, Vishal; Bakshi, Pooja; Verma, Kusum

2015-09-01

Aetiology of mediastinal adenopathy is likely to vary with geographic location and socioeconomic status of a population. Whilst most of adenopathy in the West could be attributed to malignant disorders, causes of the same in a developing country like India has not been extensively studied earlier due to lack of less invasive tools to sample these nodes for cytological and microbiological analysis. Endobronchial ultrasound (EBUS) helps us reach these nodes as a minimally invasive procedure to take aspirations under real-time ultrasound guidance. The aim of the present study is to study the aetiology of mediastinal adenopathy in our population with the help of EBUS. This was a retrospective analysis of all EBUS procedures done by the authors and the diagnosis thus obtained at Sir Ganga Ram Hospital, New Delhi, India between April 2010 and December 2011. A total of 300 patients underwent EBUS in the above period. Most common aetiology encountered in our population was a granulomatous disorder (53% cases) like tuberculosis and sarcoidosis whilst malignancy was third in order of diagnosis (17% cases). Lymph node enlargement due to anthracosis was another uncommon aetiology encountered in the study (5% cases). Benign granulomatous disorders like tuberculosis and sarcoidosis are the most common causes of mediastinal adenopathy in our population. EBUS is proving its worth for diagnosing mediastinal adenopathy. © Journal of the Association of Physicians of India 2011.

Combined cumulative sum (CUSUM) and chronological environmental analysis as a tool to improve the learning environment for linear-probe endobronchial ultrasound-guided transbronchial needle aspiration (EBUS-TBNA) trainees: a pilot study.

PubMed

Norisue, Yasuhiro; Tokuda, Yasuharu; Juarez, Mayrol; Uchimido, Ryo; Fujitani, Shigeki; Stoeckel, David A

2017-02-07

Cumulative sum (CUSUM) analysis can be used to continuously monitor the performance of an individual or process and detect deviations from a preset or standard level of achievement. However, no previous study has evaluated the utility of CUSUM analysis in facilitating timely environmental assessment and interventions to improve performance of linear-probe endobronchial ultrasound-guided transbronchial needle aspiration (EBUS-TBNA). The aim of this study was to evaluate the usefulness of combined CUSUM and chronological environmental analysis as a tool to improve the learning environment for EBUS-TBNA trainees. This study was an observational chart review. To determine if performance was acceptable, CUSUM analysis was used to track procedural outcomes of trainees in EBUS-TBNA. To investigate chronological changes in the learning environment, multivariate logistic regression analysis was used to compare several indices before and after time points when significant changes occurred in proficiency. Presence of an additional attending bronchoscopist was inversely associated with nonproficiency (odds ratio, 0.117; 95% confidence interval, 0-0.749; P = 0.019). Other factors, including presence of an on-site cytopathologist and dose of sedatives used, were not significantly associated with duration of nonproficiency. Combined CUSUM and chronological environmental analysis may be useful in hastening interventions that improve performance of EBUS-TBNA.

A rare constellation of empyema, lung abscess, and mediastinal abscess as a complication of endobronchial ultrasound-guided transbronchial needle aspiration.

PubMed

Huang, Chun-Ta; Chen, Chung-Yu; Ho, Chao-Chi; Yu, Chong-Jen

2011-07-01

The introduction of endobronchial ultrasound-guided transbronchial needle aspiration (EBUS-TBNA) brought about significant advancement in the field of bronchoscopy. The major indications for EBUS-TBNA are lung cancer staging and diagnosis of mediastinal lymphadenopathy. This procedure is minimally invasive and cost saving, and no complications have been described in large-scale studies. In this report, we present a case of empyema, lung abscess, and mediastinal abscess that developed in a patient undergoing EBUS-TBNA; the patient subsequently recovered uneventfully after aggressive surgical debridement and antimicrobial therapy. Copyright © 2010 European Association for Cardio-Thoracic Surgery. Published by Elsevier B.V. All rights reserved.

Endobronchial ultrasound-guided transbronchial needle aspiration for staging of lung cancer: a concise review.

PubMed

Aziz, Fahad

2012-09-01

Endobronchial ultrasound-guided transbronchial needle aspiration (EBUS-TBNA) offers a minimally invasive alternative to mediastinoscopy with additional access to the hilar nodes, a better safety profile, and it removes the costs and hazards of theatre time and general anesthesia with comparable sensitivity, although the negative predictive value of mediastinoscopy (and sample size) is greater. EBUS- TBNA also obtains larger samples than conventional TBNA, has superior performance and theoretically is safer, allowing real-time sampling under direct vision. It can also have predictive value both in sonographic appearance of the nodes and histological characteristics. EBUS-TBNA is therefore indicated for NSCLC staging, diagnosis of lung cancer when there is no endobronchial lesion, and diagnosis of both benign (especially tuberculosis and sarcoidosis) and malignant mediastinal lesions. The procedure is different than for flexible bronchoscopy, takes longer, and requires more training. EBUS-TBNA is more expensive than conventional TBNA but can save costs by reducing the number of more costly mediastinoscopies. In the future, endobronchial ultrasound may have applications in airways disease and pulmonary vascular disease.

Surgical treatment for mediastinal abscess induced by endobronchial ultrasound-guided transbronchial needle aspiration: a case report and literature review.

PubMed

Yokoyama, Yujiro; Nakagomi, Takahiro; Shikata, Daichi; Higuchi, Rumi; Oyama, Toshio; Goto, Taichiro

2017-07-14

Endobronchial ultrasound-guided transbronchial needle aspiration (EBUS-TBNA) is a useful and less invasive procedure for the definitive diagnosis of mediastinal and hilar lymph nodes. However, infectious complications can occur after EBUS-TBNA, although they are extremely rare. A 66-year-old man with necrotic and swollen lower paratracheal lymph nodes underwent EBUS-TBNA. A mediastinal abscess developed 9 days post-procedure. Surgical drainage and debridement of the abscess were performed along with lymph node biopsy followed by daily washing of the thoracic cavity. Surgical treatment was effective, leading to remission of the abscess. Biopsy revealed that the tumor was squamous cell carcinoma with no radiologically detected cancer elsewhere in the body. Mediastinal lung cancer was thus confirmed. Subsequent chemoradiotherapy led to the remission of the tumor. Mediastinitis after EBUS-TBNA is rare but should be considered, particularly if the target lymph nodes are necrotic. Mediastinitis can lead to serious and rapid deterioration of the patient's condition, for which surgical intervention is the treatment of choice.

Endobronchial Ultrasound: Clinical Uses and Professional Reimbursements.

PubMed

Gildea, Thomas R; Nicolacakis, Katina

2016-12-01

Endobronchial ultrasonography (EBUS) has become an invaluable tool in the diagnosis of patients with a variety of thoracic abnormalities. The majority of EBUS procedures are used to diagnose and stage mediastinal and hilar abnormalities, as well as peripheral pulmonary targets, with a probe-based technology. Nearly 1,000 articles have been written about its use and utility. New Current Procedural Terminology (CPT) codes have been introduced in 2016 to better capture the work and clinical use associated with the various types of EBUS procedures. The existing 31620 code has been deleted and replaced by three new codes: 31652, 31653, and 31654. These new codes have been through the valuation process, and the new rule for reimbursement has been active since January 1, 2016 with National Correct Coding Initiative correction as of April 1, 2016. The impact of these new codes will result in a net reduction in professional and technical reimbursement. This article describes the current use of EBUS and explains the current codes and professional reimbursement. Copyright © 2016 American College of Chest Physicians. Published by Elsevier Inc. All rights reserved.

Molecular Testing for Targeted Therapy in Advanced Non-Small Cell Lung Cancer: Suitability of Endobronchial Ultrasound Transbronchial Needle Aspiration.

PubMed

Casadio, Chiara; Guarize, Juliana; Donghi, Stefano; Di Tonno, Clementina; Fumagalli, Caterina; Vacirca, Davide; Dell'Orto, Patrizia; De Marinis, Filippo; Spaggiari, Lorenzo; Viale, Giuseppe; Barberis, Massimo

2015-10-01

Endobronchial ultrasound-guided transbronchial needle aspiration (EBUS-TBNA) is a minimally invasive procedure that has revolutionized the diagnosis and staging of lung cancer. The goal of the present study was to investigate the yield and applicability of molecular testing in the specimens obtained by EBUS-TBNA from patients with advanced non-small cell lung cancer (NSCLC), comparing the results with a series of patients who underwent diagnostic surgical procedures in the same institution. The study followed 306 consecutive patients with clinically diagnosed primary lung cancer who had the EBUS-TBNA procedure. EGFR and KRAS mutations were evaluated on cytologic specimens by Sanger sequencing and Cobas real-time polymerase chain reaction, whereas ALK rearrangement was tested by fluorescence in situ hybridization. The results were compared with those obtained from a series of 1,000 NSCLC surgical samples routinely analyzed. Molecular testing was possible in 96.9% of the samples obtained by EBUS-TBNA. EGFR (exons 18-21) mutations were found in 16.9%, KRAS mutation (exons 2-3) in 31.6%, and ALK rearrangement in 3.9% of the cases. In the surgical series, the mutations' distribution were 14.8%, 29.0%, and 3.4%, respectively. There were no statistical differences between the two series. Our study demonstrates that EBUS-TBNA can be effectively used not just for diagnosis but also for complete mutational testing. Copyright© by the American Society for Clinical Pathology.

Value of different bronchoscopic sampling techniques in diagnosis of sarcoidosis: a prospective study of 151 patients.

PubMed

Goyal, Abhishek; Gupta, Dheeraj; Agarwal, Ritesh; Bal, Amanjit; Nijhawan, Raje; Aggarwal, Ashutosh N

2014-07-01

The exact position of routine bronchoscopic sampling techniques in diagnostic workup of sarcoidosis is often debated. Herein, we ascertain the role of transbronchial needle aspiration (TBNA), endobronchial ultrasound-guided TBNA (EBUS-TBNA), transbronchial lung biopsy (TBLB), and endobronchial biopsy (EBB) in diagnosis of sarcoidosis. Consecutive patients with suspected sarcoidosis who underwent fiberoptic bronchoscopy were studied. TBLB, EBB, TBNA, or EBUS-TBNA was performed as indicated in a standardized manner. A diagnosis of sarcoidosis was established based on the finding of non-necrotizing granulomas or on clinical grounds at 6-month follow-up. Individual and cumulative yield of various procedures and their correlation with clinicoradiologic parameters was analyzed. Of the 164 patients studied, 151 were finally diagnosed as sarcoidosis. Granulomas were demonstrated in 127 (84.2%) patients. Diagnostic yield of TBLB, EBB, TBNA, and EBUS-TBNA was 68.7%, 49.6%, 22.43%, and 57.1%, respectively. Cumulative yields of various procedures were: EBB+TBLB 81.4%; TBLB+TBNA 73.7%; TBNA+EBB 62.9%; TBLB+EBB+TBNA 86.9%; and TBLB+EBB+EBUS-TBNA 86.4%. In those with visible mucosal abnormalities, TBLB+EBB conferred the highest diagnostic yield (92.8%). Clinical findings or radiologic stage had no impact on diagnostic yield. TBLB is an important tool in bronchoscopic diagnosis of sarcoidosis. If endobronchial abnormalities are seen during bronchoscopy, TBLB with EBB gives the best results otherwise TBLB combined with conventional TBNA and EBB or EBUS-TBNA are required to maximize the diagnostic yield.

Endobronchial Ultrasound-guided Transbronchial Needle Injection of Liposomal Amphotericin B for the Treatment of Symptomatic Aspergilloma.

PubMed

Parikh, Mihir S; Seeley, Eric; Nguyen-Tran, Evelyn; Krishna, Ganesh

2017-10-01

Surgical treatment with lung resection has traditionally been the treatment of choice for pulmonary cavities containing aspergillomas that cause hemoptysis. Endobronchial ultrasound (EBUS) is a minimally invasive bronchoscopic technique that is commonly used for transbronchial needle aspiration of hilar and mediastinal lymph nodes as well as centrally located parenchymal lesions. Here, we describe a case of a 71-year-old woman who was found to have a cavitary lesion in the lung containing aspergillomas. Under direct ultrasound visualization with EBUS, liposomal amphotericin B was injected into the aspergillomas. These aspergillomas regressed after treatment. To our knowledge, this is the first reported treatment of aspergilloma with EBUS-guided transbronchial needle injection of liposomal amphotericin B.

Multimodal system for the planning and guidance of bronchoscopy

NASA Astrophysics Data System (ADS)

Higgins, William E.; Cheirsilp, Ronnarit; Zang, Xiaonan; Byrnes, Patrick

2015-03-01

Many technical innovations in multimodal radiologic imaging and bronchoscopy have emerged recently in the effort against lung cancer. Modern X-ray computed-tomography (CT) scanners provide three-dimensional (3D) high-resolution chest images, positron emission tomography (PET) scanners give complementary molecular imaging data, and new integrated PET/CT scanners combine the strengths of both modalities. State-of-the-art bronchoscopes permit minimally invasive tissue sampling, with vivid endobronchial video enabling navigation deep into the airway-tree periphery, while complementary endobronchial ultrasound (EBUS) reveals local views of anatomical structures outside the airways. In addition, image-guided intervention (IGI) systems have proven their utility for CT-based planning and guidance of bronchoscopy. Unfortunately, no IGI system exists that integrates all sources effectively through the complete lung-cancer staging work flow. This paper presents a prototype of a computer-based multimodal IGI system that strives to fill this need. The system combines a wide range of automatic and semi-automatic image-processing tools for multimodal data fusion and procedure planning. It also provides a flexible graphical user interface for follow-on guidance of bronchoscopy/EBUS. Human-study results demonstrate the system's potential.

[Results of endobronchial ultrasound-guided transbronchial needle aspiration in lung cancer: importance of the lymph node involvement prevalence].

PubMed

De Dominicis, F; Fourdrain, A; Iquille, J; Toublanc, B; François, G; Basille, D; Monconduit, J; Merlusca, G; Jounieaux, V; Andrejak, C; Berna, P

2015-08-01

We studied the non-surgical invasive staging by endobronchial ultrasound-guided transbronchial needle aspiration (EBUS-TBNA) and we detailed the differences of our series, in order to understand the criteria allowing to achieve a better performance. Retrospective observational study conducted between 2007 and 2011, including all patients with proven NSCLC who underwent EBUS-TBNA. For the 92 EBUS-TBNA performed, we found a sensitivity of 78%, a specificity of 93%, a positive predictive value (PPV) of 98%, a negative predictive value (NPV) of 45%, an accuracy of 80% and a prevalence of lymph node involvement at 84%. A learning curve has been demonstrated and a significant difference was found based on the number of punctures by procedure (P=0.02) or on histological type (P=0.02). By analyzing the data of the literature, we have been able to demonstrate that the accuracy and the negative predictive value are correlated with the prevalence. If we take into account this correlation, we can consider the results of our study close to those of the literature. We highlighted a number of criteria that will influence the diagnostic yield of EBUS-TBNA. While some have already been described, other criteria such as histological type or patient selection criteria are less discussed. The key point is the correlation between the prevalence and EBUS-TBNA results. Results of the assessment of lymph node involvement techniques should be interpreted according to the prevalence of lymph node involvement. Copyright © 2015 Elsevier Masson SAS. All rights reserved.

Fiducial marker placement using endobronchial ultrasound and navigational bronchoscopy for stereotactic radiosurgery: an alternative strategy.

PubMed

Harley, Daniel P; Krimsky, William S; Sarkar, Saiyad; Highfield, David; Aygun, Cengis; Gurses, Burak

2010-02-01

Stereotactic radiosurgery is being increasingly used to treat patients with early-stage non-small cell lung cancers (NSCLC) who are not candidates for surgical resection. Stereotactic radiosurgery usually needs fiducial markers (FMs) for the tracking process. FMs have generally been placed using percutaneous computed axial tomography scan guidance. We report the results of FM placement using endobronchial ultrasound (EBUS) in 43 patients. A multidisciplinary tumor board evaluates NSCLC patients before they are offered stereotactic radiosurgery. In patients selected for stereotactic radiosurgery, FMs were inserted into peripheral, central, and mediastinal tumors using EBUS and, in selected patients, navigational bronchoscopy. Patients underwent repeat computed axial tomography chest scans 2 weeks later to ensure stability of the FMs before beginning stereotactic radiosurgery. Included were 43 consecutive patients (21 men, 22 women; mean age, 74.4 years). Forty-two (98%) had NSC carcinomas (5 recurrences); 1 had a carcinoid tumor. Twenty-two tumors were located in the left lung, 19 in the right lung, 1 at the carina, and 1 pretracheal. Two to 5 FMs were placed in and around all tumor masses using EBUS and, for peripheral lesions, EBUS combined with navigational bronchoscopy. Thirty patients had no displacement of FMs. In the 13 who had displaced 1 or more FMs, the ability to use the remaining FMs for stereotactic radiosurgery was unimpaired. EBUS and navigational bronchoscopy are safe and effective methods to position FMs for preparing patients with both central and peripheral lung cancers for stereotactic radiosurgery. 2010 The Society of Thoracic Surgeons. Published by Elsevier Inc. All rights reserved.

[Comparison of two quantitative methods of endobronchial ultrasound real-time elastography for evaluating intrathoracic lymph nodes].

PubMed

Mao, X W; Yang, J Y; Zheng, X X; Wang, L; Zhu, L; Li, Y; Xiong, H K; Sun, J Y

2017-06-12

Objective: To compare the clinical value of two quantitative methods in analyzing endobronchial ultrasound real-time elastography (EBUS-RTE) images for evaluating intrathoracic lymph nodes. Methods: From January 2014 to April 2014, EBUS-RTE examination was performed in patients who received EBUS-TBNA examination in Shanghai Chest Hospital. Each intrathoracic lymph node had a selected EBUS-RTE image. Stiff area ratio and mean hue value of region of interest (ROI) in each image were calculated respectively. The final diagnosis of lymph node was based on the pathologic/microbiologic results of EBUS-TBNA, pathologic/microbiologic results of other examinations and clinical following-up. The sensitivity, specificity, positive predictive value, negative predictive value and accuracy were evaluated for distinguishing malignant and benign lesions. Results: Fifty-six patients and 68 lymph nodes were enrolled in this study, of which 35 lymph nodes were malignant and 33 lymph nodes were benign. The stiff area ratio and mean hue value of benign and malignant lesions were 0.32±0.29, 0.62±0.20 and 109.99±28.13, 141.62±17.52, respectively, and statistical differences were found in both of those two methods ( t =-5.14, P <0.01; t =-5.53, P <0.01). The area under curves was 0.813, 0.814 in stiff area ratio and mean hue value, respectively. The optimal diagnostic cut-off value of stiff area ratio was 0.48, and the sensitivity, specificity, positive predictive value, negative predictive value and accuracy were 82.86%, 81.82%, 82.86%, 81.82% and 82.35%, respectively. The optimal diagnostic cut-off value of mean hue value was 126.28, and the sensitivity, specificity, positive predictive value, negative predictive value and accuracy were 85.71%, 75.76%, 78.95%, 83.33% and 80.88%, respectively. Conclusion: Both the stiff area ratio and mean hue value methods can be used for analyzing EBUS-RTE images quantitatively, having the value of differentiating benign and malignant intrathoracic lymph nodes, and the stiff area ratio is better than the mean hue value between the two methods.

Comparison of 21-Gauge and 22-Gauge Aspiration Needle in Endobronchial Ultrasound-Guided Transbronchial Needle Aspiration

PubMed Central

Akulian, Jason; Lechtzin, Noah; Yasin, Faiza; Kamdar, Biren; Ernst, Armin; Ost, David E.; Ray, Cynthia; Greenhill, Sarah R.; Jimenez, Carlos A.; Filner, Joshua; Feller-Kopman, David

2013-01-01

Background: Endobronchial ultrasound-guided transbronchial needle aspiration (EBUS-TBNA) is a minimally invasive procedure originally performed using a 22-gauge (22G) needle. A recently introduced 21-gauge (21G) needle may improve the diagnostic yield and sample adequacy of EBUS-TBNA, but prior smaller studies have shown conflicting results. To our knowledge, this is the largest study undertaken to date to determine whether the 21G needle adds diagnostic benefit. Methods: We retrospectively evaluated the results of 1,299 patients from the American College of Chest Physicians Quality Improvement Registry, Education, and Evaluation (AQuIRE) Diagnostic Registry who underwent EBUS-TBNA between February 2009 and September 2010 at six centers throughout the United States. Data collection included patient demographics, sample adequacy, and diagnostic yield. Analysis consisted of univariate and multivariate hierarchical logistic regression comparing diagnostic yield and sample adequacy of EBUS-TBNA specimens by needle gauge. Results: A total of 1,235 patients met inclusion criteria. Sample adequacy was obtained in 94.9% of the 22G needle group and in 94.6% of the 21G needle group (P = .81). A diagnosis was made in 51.4% of the 22G and 51.3% of the 21G groups (P = .98). Multivariate hierarchical logistic regression showed no statistical difference in sample adequacy or diagnostic yield between the two groups. The presence of rapid onsite cytologic evaluation was associated with significantly fewer needle passes per procedure when using the 21G needle (P < .001). Conclusions: There is no difference in specimen adequacy or diagnostic yield between the 21G and 22G needle groups. EBUS-TBNA in conjunction with rapid onsite cytologic evaluation and a 21G needle is associated with fewer needle passes compared with a 22G needle. PMID:23632441

(18)F-FDG uptake predicts diagnostic yield of transbronchial biopsy in peripheral lung cancer.

PubMed

Umeda, Yukihiro; Demura, Yoshiki; Anzai, Masaki; Matsuoka, Hiroki; Araya, Tomoyuki; Nishitsuji, Masaru; Nishi, Koichi; Tsuchida, Tatsuro; Sumida, Yasuyuki; Morikawa, Miwa; Ameshima, Shingo; Ishizaki, Takeshi; Kasahara, Kazuo; Ishizuka, Tamotsu

2014-07-01

Recent advances in endobronchial ultrasonography with a guide sheath (EBUS-GS) have enabled better visualization of distal airways, while virtual bronchoscopic navigation (VBN) has been shown useful as a guide to navigate the bronchoscope. However, indications for utilizing VBN and EBUS-GS are not always clear. To clarify indications for a bronchoscopic examination using VBN and EBUS-GS, we evaluated factors that predict the diagnostic yield of a transbronchial biopsy (TBB) procedure for peripheral lung cancer (PLC) lesions. We retrospectively reviewed the charts of 194 patients with 201 PLC lesions (≤3cm mean diameter), and analyzed the association of diagnostic yield of TBB with [(18)F]-fluoro-2-deoxy-d-glucose ((18)F-FDG) positron emission tomography and chest computed tomography (CT) findings. The diagnostic yield of TBB using VBN and EBUS-GS was 66.7%. High maximum standardized uptake value (SUVmax), positive bronchus sign, and ground-glass opacity component shown on CT were all significant predictors of diagnostic yield, while multivariate analysis showed only high (18)F-FDG uptake (SUVmax ≥2.8) and positive bronchus sign as significant predictors. Diagnostic yield was higher for PLC lesions with high (18)F-FDG uptake (SUVmax ≥2.8) and positive bronchus sign (84.6%) than for those with SUVmax <2.8 and negative bronchus sign (33.3%). High (18)F-FDG uptake was also correlated with tumor invasiveness. High (18)F-FDG uptake predicted the diagnostic yield of TBB using VBN and EBUS-GS for PLC lesions. (18)F-FDG uptake and bronchus sign may indicate for the accurate application of bronchoscopy with those modalities for diagnosing PLC. Copyright © 2014 Elsevier Ireland Ltd. All rights reserved.

Randomized Trial of Endobronchial Ultrasound-Guided Transbronchial Needle Aspiration With and Without Rapid On-site Evaluation for Lung Cancer Genotyping.

PubMed

Trisolini, Rocco; Cancellieri, Alessandra; Tinelli, Carmine; de Biase, Dario; Valentini, Ilaria; Casadei, Gianpiero; Paioli, Daniela; Ferrari, Franco; Gordini, Giovanni; Patelli, Marco; Tallini, Giovanni

2015-12-01

Experts and scientific society guidelines recommend that rapid on-site evaluation (ROSE) be used with endobronchial ultrasound-guided transbronchial needle aspiration (EBUS-TBNA) to optimize lung cancer genotyping, but no comparative trial has been carried out to confirm and quantify its usefulness. To assess the influence of ROSE on the yield of EBUS-TBNA for a multigene molecular analysis of lung cancer samples, consecutive patients with suspected or known advanced lung cancer were randomized to undergo EBUS-TBNA without ROSE (EBUS arm) or with ROSE (ROSE arm). The primary end point was the rate of the successful accomplishment of the institution's clinical protocol for molecular profiling of nonsquamous non-small cell lung cancer (EGFR and KRAS testing, followed by ALK testing for tumors with EGFR and KRAS wild-type status). Complete genotyping was achieved in 108 of 126 patients (85.7%) (90.8% in the ROSE arm vs 80.3% in the EBUS arm, P = .09). The patients in the ROSE arm were less likely to have samples that could be used only for pathologic diagnosis because of minimal tumor burden (0 vs 6, P = .05), and were more likely to have the bronchoscopy terminated after a single biopsy site (58.9% vs 44.1%, P = .01). ROSE prevents the need for a repeat invasive diagnostic procedure aimed at molecular profiling in at least one out of 10 patients with advanced lung cancer and significantly reduces the risk of retrieving samples that can be used only for pathologic subtyping because of minimal tumor burden. ClinicalTrials.gov; No.: NCT01799382; URL: www.clinicaltrials.gov.

Optimal sequence of tests for the mediastinal staging of non-small cell lung cancer.

PubMed

Luque, Manuel; Díez, Francisco Javier; Disdier, Carlos

2016-01-26

Non-small cell lung cancer (NSCLC) is the most prevalent type of lung cancer and the most difficult to predict. When there are no distant metastases, the optimal therapy depends mainly on whether there are malignant lymph nodes in the mediastinum. Given the vigorous debate among specialists about which tests should be used, our goal was to determine the optimal sequence of tests for each patient. We have built an influence diagram (ID) that represents the possible tests, their costs, and their outcomes. This model is equivalent to a decision tree containing millions of branches. In the first evaluation, we only took into account the clinical outcomes (effectiveness). In the second, we used a willingness-to-pay of € 30,000 per quality adjusted life year (QALY) to convert economic costs into effectiveness. We assigned a second-order probability distribution to each parameter in order to conduct several types of sensitivity analysis. Two strategies were obtained using two different criteria. When considering only effectiveness, a positive computed tomography (CT) scan must be followed by a transbronchial needle aspiration (TBNA), an endobronchial ultrasound (EBUS), and an endoscopic ultrasound (EUS). When the CT scan is negative, a positron emission tomography (PET), EBUS, and EUS are performed. If the TBNA or the PET is positive, then a mediastinoscopy is performed only if the EBUS and EUS are negative. If the TBNA or the PET is negative, then a mediastinoscopy is performed only if the EBUS and the EUS give contradictory results. When taking into account economic costs, a positive CT scan is followed by a TBNA; an EBUS is done only when the CT scan or the TBNA is negative. This recommendation of performing a TBNA in certain cases should be discussed by the pneumology community because TBNA is a cheap technique that could avoid an EBUS, an expensive test, for many patients. We have determined the optimal sequence of tests for the mediastinal staging of NSCLC by considering sensitivity, specificity, and the economic cost of each test. The main novelty of our study is the recommendation of performing TBNA whenever the CT scan is positive. Our model is publicly available so that different experts can populate it with their own parameters and re-examine its conclusions. It is therefore proposed as an evidence-based instrument for reaching a consensus.

Comparison of 21-gauge and 22-gauge aspiration needle in endobronchial ultrasound-guided transbronchial needle aspiration: results of the American College of Chest Physicians Quality Improvement Registry, Education, and Evaluation Registry.

PubMed

Yarmus, Lonny B; Akulian, Jason; Lechtzin, Noah; Yasin, Faiza; Kamdar, Biren; Ernst, Armin; Ost, David E; Ray, Cynthia; Greenhill, Sarah R; Jimenez, Carlos A; Filner, Joshua; Feller-Kopman, David

2013-04-01

Endobronchial ultrasound-guided transbronchial needle aspiration (EBUS-TBNA) is a minimally invasive procedure originally performed using a 22-gauge (22G) needle. A recently introduced 21-gauge (21G) needle may improve the diagnostic yield and sample adequacy of EBUS-TBNA, but prior smaller studies have shown conflicting results. To our knowledge, this is the largest study undertaken to date to determine whether the 21G needle adds diagnostic benefit. We retrospectively evaluated the results of 1,299 patients from the American College of Chest Physicians Quality Improvement Registry, Education, and Evaluation (AQuIRE) Diagnostic Registry who underwent EBUS-TBNA between February 2009 and September 2010 at six centers throughout the United States. Data collection included patient demographics, sample adequacy, and diagnostic yield. Analysis consisted of univariate and multivariate hierarchical logistic regression comparing diagnostic yield and sample adequacy of EBUS-TBNA specimens by needle gauge. A total of 1,235 patients met inclusion criteria. Sample adequacy was obtained in 94.9% of the 22G needle group and in 94.6% of the 21G needle group (P = .81). A diagnosis was made in 51.4% of the 22G and 51.3% of the 21G groups (P = .98). Multivariate hierarchical logistic regression showed no statistical difference in sample adequacy or diagnostic yield between the two groups. The presence of rapid onsite cytologic evaluation was associated with significantly fewer needle passes per procedure when using the 21G needle (P < .001). There is no difference in specimen adequacy or diagnostic yield between the 21G and 22G needle groups. EBUS-TBNA in conjunction with rapid onsite cytologic evaluation and a 21G needle is associated with fewer needle passes compared with a 22G needle.

Characteristic endobronchial ultrasound image of hemangiopericytoma/solitary fibrous tumor.

PubMed

Chen, Fengshi; Yoshizawa, Akihiko; Okubo, Kenichi; Date, Hiroshi

2010-09-01

Hemangiopericytomatous pattern is characteristic of hemangiopericytoma/solitary fibrous tumor (HPC/SFT) and certain histological features might indicate a malignant potential, but the behavior of HPC/SFT is unpredictable. Endobronchial ultrasound (EBUS) is a useful diagnostic device in that the ultrasonographic image can be viewed and the EBUS-transbronchial needle aspiration can obtain a biopsied sample. We herein report a patient undergoing multiple surgical resections of recurrent HPC/SFT. A 74-year-old man had undergone right upper lobectomy for HPC/SFT 15 years ago. He received a partial resection of the left lung and a resection of the anterior mediastinal mass for its recurrences 13 years and six years ago, respectively. He had also undergone surgery for gastric carcinoma two years ago. He then presented with a tumor measuring 3 x 4 cm in the subcarinal area. Preoperative EBUS revealed a tumor with abundant thin-walled vessel-like structures, which was consistent with HPC/SFT. The tumor was completely resected and was finally diagnosed as low-grade malignant HPC/SFT.

Tracheobronchial puncture-site nodular reaction (TPNR) following endobronchial ultrasound-guided transbronchial needle aspiration (EBUS-TBNA): Systematic review of case reports.

PubMed

Madan, Karan; Tiwari, Pavan; Arava, Sudheer; Hadda, Vijay; Mohan, Anant; Guleria, Randeep

2017-01-01

Endobronchial ultrasound-guided transbronchial needle aspiration (EBUS-TBNA) is a minimally invasive and efficacious diagnostic modality for lung cancer staging and evaluation of undiagnosed mediastinal lymphadenopathy. Procedure-related complications are uncommon. We herein report an infrequently described phenomenon following EBUS-TBNA in which two patients developed nodular granulation tissue at the tracheobronchial puncture site. On systematic review, we found description of such phenomena by terminologies such as endobronchial inflammatory polyp, granuloma, and endobronchial mass. The endobronchial inflammatory polyp has been one of the most commonly used terminologies for these; but in most cases, the classical features of an inflammatory polyp are lacking. We propose the term, tracheobronchial puncture-site nodular reaction (TPNR) with further classification into granulomatous and nongranulomatous subtypes, for standardized reporting of such reactions following transbronchial needle aspiration procedures. Knowledge of this entity and standardized nomenclature shall help in better characterization of the outcomes and risk factors for the occurrence of these reactions.

Implications of Upwells as Hydrodynamic Jets in a Pulse Jet Mixed System

DOE Office of Scientific and Technical Information (OSTI.GOV)

Pease, Leonard F.; Bamberger, Judith A.; Minette, Michael J.

This report evaluates the physics of the upwell flow in pulse jet mixed systems in the Hanford Tank Waste Treatment and Immobilization Plant (WTP). Although the initial downward flow and radial flow from jets characteristic of pulse jet mixers (PJMs) has been analyzed, the upwells have received considerably less attention despite having significant implications for vessel mixing. Do the upwells behave like jets? How do the upwells scale? When will the central upwell break through? What proportion of the vessel is blended by the upwells themselves? Indeed, how the physics of the central upwell is affected by multiple PJMs (e.g.,more » six in the proposed mixing vessels), non-Newtonian rheology, and significant multicomponent solids loadings remain unexplored.« less

Iberian and California-Oregon Upwelling Systems: trends and status of two upwelling systems at the same latitude over the last four decades.

NASA Astrophysics Data System (ADS)

Barreiro, B.; Barton, E. D.

2012-04-01

The study of Eastern Boundary Upwelling Systems is of vital importance, given the interest in rational management of the fisheries resources. The high level of biogeochemical activity associated with the physical process of upwelling increases primary production and enriches the living resources of these areas. This presentation focuses on the variability of these physical processes on daily to interdecadal scales, in an investigation of the effects of climate change in the Iberian and California-Oregon Upwelling Systems. The Upwelling Index (UI) was analysed for the period 1967-2010 at 35.5-44.5°N in both areas. The two systems differ in that the magnitudes of upwelling intensity off California-Oregon are 3.3 higher than off Iberia but they show a similar latitudinal behaviour. The annual/interannual scale variability of upwelling can be represented by the recently introduced Cumulative Upwelling Index (CUI) based on summing the mean daily UI. The seasonal cycle results show the length of upwelling season increases southwards from 180 to 300 days and a net upwelling occurs only for latitudes lower than 43°N. On the interannual scales, the CUI showed a roughly linear change at high and low latitudes (R>0.9), with slopes between 250 and -130 m3 s-1 km-1 day-1 in Iberian and 620 and -290 m3 s-1 km-1 day-1 in California-Oregon. The central areas (40.5-42.5°N) are less stable and shifted between net upwelling and downwelling over extended periods. This information helps us contextualize the present state of the study area and interpreted ongoing intensive process-oriented studies within the longer term variability.

Hybrid Electric Transit Bus Testing | Transportation Research | NREL

Science.gov Websites

this study are featured in the Long Beach Transit: Two-Year Evaluation of Gasoline-Electric Hybrid manufactured by Orion Industries with BAE propulsion systems. The results of this study are featured in the In power units. The results of this study are featured in the Ebus Hybrid Electric Buses and Trolleys case

Triple Gene Analysis Using Samples Obtained by Endobronchial Ultrasound-guided Transbronchial Needle Aspiration

PubMed Central

Lee, Kyungjong; Um, Sang-Won; Jeong, Byeong-Ho; Yang, Jung Wook; Choi, Yoon-La; Han, Joungho; Kim, Hojoong; Kwon, O Jung

2016-01-01

Objective A mutational analysis of tumor tissue samples is an important part of advanced lung cancer treatment strategies. This study evaluated the efficacy of a triple gene analysis using samples obtained via endobronchial ultrasound-guided transbronchial needle aspiration (EBUS-TBNA). Methods Either metastatic lymph nodes or primary lung mass samples obtained by EBUS-TBNA were collected between May 2011 and May 2013. We consecutively analyzed epidermal growth factor receptor (EGFR), V-Ki-ras2 Kirsten rat sarcoma viral oncogene homolog (KRAS), and anaplastic lymphoma kinase (ALK) fusion genes using remnant tissue samples. Results A total of 109 patients were diagnosed with non-small cell lung cancer (NSCLC). Of these, 70% were adenocarcinoma, 27% squamous cell carcinoma with NSCLC, and 3% were related to other types of lung cancer. EGFR mutations were detected in 23 cases (21.1%), KRAS mutations in 13 cases (11.9%), and ALK fusion genes in 5 cases (4.9%). The ALK fusion genes could not be analyzed in four cases because of insufficient tissue samples remaining after routine histochemistry and an EGFR/KRAS mutation analysis. We found that small biopsy samples from EBUS-TBNA were adequate for performing a triple gene analysis in 97 patients (96%). ALK fusion protein immunohistochemistry (IHC) was 100% consistent with fluorescence in situ hybridization (FISH). Conclusion Small samples obtained by EBUS-TBNA were found to be sufficient for performing a triple gene analysis following routine histology and IHC. ALK IHC showed a very good concordance with FISH for detecting ALK fusion genes. PMID:27803402

Endobronchial Ultrasound-guided Transbronchial Needle Aspiration Using 19-G Needle for Sarcoidosis.

PubMed

Balwan, Akshu

2018-05-16

Flexible bronchoscopy with endobronchial ultrasound (EBUS)-guided transbronchial needle aspiration (TBNA) is increasingly being used to obtain pathology specimens for diagnosis of sarcoidosis. There is wide variation in reported diagnostic yield in literature. New TBNA needles are available in the market but data are lacking about their diagnostic yield especially for sarcoidosis. This study reports the diagnostic yield of bronchoscopy with EBUS-TBNA using ViziShot FLEX 19-G needle in a series of patients with suspected sarcoidosis. This is a retrospective chart review for diagnostic yield of the 19-G EBUS-TBNA needle for suspected sarcoidosis. Eighty-six EBUS bronchoscopies were performed, 15 were done with clinical suspicion of sarcoidosis. The 19-G needle was used for all cases of suspected sarcoidosis. The procedure was diagnostic of sarcoidosis in 14 (93.3%) patients by TBNA with 1 nondiagnostic bronchoscopy. Procedural diagnostic yield was 93.3%. Eighty-five percent (28/33) of sampled lymph nodes were positive for noncaseating granulomas. The yield of transbronchial lung biopsy (TBLB) and endobronchial lung biopsy was 38% (5/13) and 43% (6/14), respectively. TBLB and endobronchial lung biopsy did not add to the diagnostic yield of the procedure. No significant adverse events were noted. This series reports a higher diagnostic yield than most other published studies and opens platform for direct comparison of each available needle. It also adds to the safety data for this larger needle. In addition, it raises doubt into utility of TBLB for diagnosis of sarcoidosis, which can increase the procedural complications.

Comparison of Sample Adequacy and Diagnostic Yield of 19- and 22-G EBUS-TBNA Needles.

PubMed

Chaddha, Udit; Ronaghi, Reza; Elatre, Waafa; Chang, Ching-Fei; Mahdavi, Ramyar

2018-05-16

The 2016 CHEST consensus guidelines recommend use of either 21- or 22-G needles for endobronchial ultrasound-guided transbronchial needle aspiration (EBUS-TBNA). We decided to prospectively compare sample adequacy and diagnostic yield of the 19-G with the 22-G EBUS needle, hypothesizing that a larger gauge difference might magnify the differences between 2 needle sizes. Twenty-seven patients undergoing EBUS-TBNA at our institution were evaluated. All cases were performed by a single operator formally trained in interventional pulmonology. Both Olympus 19- and 22-G needles were used at each lymph node station in an alternating manner. Rapid on-site cytology evaluation was used and a separate cell block was prepared for each needle at each station. Fifty-six lymph nodes were analyzed. Diagnoses included cancer (36%, including 1 lymphoma), reactive lymphoid tissue (53%), and sarcoidosis (11%). One hundred sixty-two and 163 passes were made with the 22- and 19-G needle, respectively. Sample adequacy was 73% and 46% with the 22 and 19-G needle, respectively (P<0.001). Significantly fewer passes were bloody with the 22-G compared with the 19-G needle (19% vs. 59%; P<0.001). Diagnostic yield was not different between the 22- and 19-G needles (95% vs. 93%; P=0.62). In addition to no difference in diagnostic yield, the 19-G needle yielded samples that were frequently less adequate and more often bloody compared with the 22-G needle. Despite the larger caliber lumen, we conclude that the 19-G needle does not confer a diagnostic advantage.

Diagnostic utility of endobronchial ultrasound features in differentiating malignant and benign lymph nodes.

PubMed

Agrawal, Sumita P; Ish, Pranav; Goel, Akhil D; Gupta, Nitesh; Chakrabarti, Shibdas; Bhattacharya, Dipak; Sen, Manas K; Suri, Jagdish C

2018-06-25

Endobronchial ultrasound (EBUS) features have been shown to be useful in predicting etiology of enlarged malignant lymph nodes. However, there is dearth of evidence especially from developing countries. We assessed the EBUS characteristics across various mediastinal and hilar lymphadenopathies. In this prospective study, all patients with mediastinal and hilar lymphadenopathy on CT Chest and who were planned for EBUS-FNA (Fine Needle Aspiration) were included. EBUS features of lymph nodes studied were shape, size, margins, echogenicity, central hilar structure (CHS), coagulation necrosis sign and colour power doppler index (CPDI). These were scored and compared between benign and malignant lymphadenopathies. A total of 86 lymph nodes in 46 patients were prospectively studied of which 23 (26.7%) were malignant, 27 (31.3%) tuberculosis and 36 (41.8%) sarcoidosis. There was significant difference between malignant and benign lymph nodes in terms of CHS [central hilar structutre] (p=0.011), margins (p=0.036) and coagulation necrosis sign (p<0.001). On comparison of features of malignancy and tuberculosis, there were significant differences in margins (p=0.016) and coagulation necrosis sign (p 0.001). However, when malignancy and sarcoidosis was compared, there were differences in echogenicity (p=0.002), CHS (p=0.009) and coagulation necrosis sign (p<0.001). Only coagulation necrosis sign was found to be highly consistent with malignant lymph nodes. The other features cannot be used to distinguish malignant from benign lymph nodes, especially in a developing country like India where tuberculosis is a common cause of mediastinal lymphadenopathy.

Holocene variability in the intensity of wind-gap upwelling in the tropical eastern Pacific

USGS Publications Warehouse

Toth, Lauren T.; Aronson, Richard B.; Cheng, Hai; Edwards, R. Lawrence

2015-01-01

Wind-driven upwelling in Pacific Panamá is a significant source of oceanographic variability in the tropical eastern Pacific. This upwelling system provides a critical teleconnection between the Atlantic and tropical Pacific that may impact climate variability on a global scale. Despite its importance to oceanographic circulation, ecology, and climate, little is known about the long-term stability of the Panamanian upwelling system or its interaction with climatic forcing on millennial time scales. Using a combination of radiocarbon and U-series dating of fossil corals collected in cores from five sites across Pacific Panamá, we reconstructed the local radiocarbon reservoir correction, ΔR, from ~6750 cal B.P. to present. Because the ΔR of shallow-water environments is elevated by upwelling, our data set represents a millennial-scale record of spatial and temporal variability of the Panamanian upwelling system. The general oceanographic gradient from relatively strong upwelling in the Gulf of Panamá to weak-to-absent upwelling in the Gulf of Chiriquí was present throughout our record; however, the intensity of upwelling in the Gulf of Panamá varied significantly through time. Our reconstructions suggest that upwelling in the Gulf of Panamá is weak at present; however, the middle Holocene was characterized by periods of enhanced upwelling, with the most intense upwelling occurring just after of a regional shutdown in the development of reefs at ~4100 cal B.P. Comparisons with regional climate proxies suggest that, whereas the Intertropical Convergence Zone is the primary control on modern upwelling in Pacific Panamá, the El Niño–Southern Oscillation drove the millennial-scale variability of upwelling during the Holocene.

Coastal upwelling seasonality and variability of temperature and chlorophyll in a small coastal embayment

NASA Astrophysics Data System (ADS)

Walter, Ryan K.; Armenta, Kevin J.; Shearer, Brandon; Robbins, Ian; Steinbeck, John

2018-02-01

While the seasonality of wind-driven coastal upwelling in eastern boundary upwelling systems has long been established, many studies describe two distinct seasons (upwelling and non-upwelling), a generalized framework that does not capture details relevant to marine ecosystems. In this contribution, we present a more detailed description of the annual cycle and upwelling seasonality for an understudied location along the central California coast. Using both the mean monthly upwelling favorable wind stress and the monthly standard deviation, we define the following seasons (contiguous months) and a transitional period (non-contiguous months): "Winter Storms" season (Dec-Jan-Feb), "Upwelling Transition" period (Mar and Jun), "Peak Upwelling" season (Apr-May), "Upwelling Relaxation" season (Jul-Aug-Sep), and "Winter Transition" season (Oct-Nov). In order to describe the oceanic response to this upwelling wind seasonality, we take advantage of nearly a decade of full water-column measurements of temperature and chlorophyll made using an automated profiling system at the end of the California Polytechnic State University Pier in San Luis Obispo Bay, a small ( 2 km wide near study site) and shallow ( 10 m average bay depth) coastal embayment. Variability and average-year patterns are described inside the bay during the various upwelling seasons. Moreover, the role of the local coastline orientation and topography on bay dynamics is also assessed using long-term measurements collected outside of the bay. The formation of a seasonally variable upwelling shadow system and potential nearshore retention zone is discussed. The observations presented provide a framework on which to study interannual changes to the average-year seasonal cycle, assess the contribution of higher-frequency features to nearshore variability, and better predict dynamically and ecologically important events.

Complications, Consequences, and Practice Patterns of Endobronchial Ultrasound-Guided Transbronchial Needle Aspiration

PubMed Central

Shah, Archan M.; Lei, Xiudong; Jimenez, Carlos A.; Morice, Rodolfo C.; Yarmus, Lonny; Filner, Joshua; Ray, Cynthia; Michaud, Gaetane; Greenhill, Sara R.; Sarkiss, Mona; Casal, Roberto; Rice, David; Ost, David E.

2013-01-01

Background: Few studies of endobronchial ultrasound-guided transbronchial needle aspiration (EBUS-TBNA) have been large enough to identify risk factors for complications. The primary objective of this study was to quantify the incidence of and risk factors for complications in patients undergoing EBUS-TBNA. Methods: Data on prospectively enrolled patients undergoing EBUS-TBNA in the American College of Chest Physicians Quality Improvement Registry, Evaluation, and Education (AQuIRE) database were extracted and analyzed for the incidence, consequences, and predictors of complications. Results: We enrolled 1,317 patients at six hospitals. Complications occurred in 19 patients (1.44%; 95% CI, 0.87%-2.24%). Transbronchial lung biopsy (TBBx) was the only risk factor for complications, which occurred in 3.21% of patients who underwent the procedure and in 1.15% of those who did not (OR, 2.85; 95% CI, 1.07-7.59; P = .04). Pneumothorax occurred in seven patients (0.53%; 95% CI, 0.21%-1.09%). Escalations in level of care occurred in 14 patients (1.06%; 95% CI, 0.58%-1.78%); its risk factors were age > 70 years (OR, 4.06; 95% CI, 1.36-12.12; P = .012), inpatient status (OR, 4.93; 95% CI, 1.30-18.74; P = .019), and undergoing deep sedation or general anesthesia (OR, 4.68; 95% CI, 1.02-21.61; P = .048). TBBx was performed in only 12.6% of patients when rapid onsite cytologic evaluation (ROSE) was used and in 19.1% when it was not used (P = .006). Interhospital variation in TBBx use when ROSE was used was significant (P < .001). Conclusions: TBBx was the only risk factor for complications during EBUS-TBNA procedures. ROSE significantly reduced the use of TBBx. PMID:23117878

The contribution of cell blocks in the diagnosis of mediastinal masses and hilar adenopathy samples from echobronchoscopy.

PubMed

Lourido-Cebreiro, Tamara; Leiro-Fernández, Virginia; Tardio-Baiges, Antoni; Botana-Rial, Maribel; Núñez-Delgado, Manuel; Álvarez-Martín, M Jesús; Fernández-Villar, Alberto

2014-07-01

Cell block material from puncture can be obtained with endobronchial ultrasound-guided transbronchial needle aspiration (EBUS-TBNA) in many cases. The aim of this study was to analyse the value of additional information from cell blocks obtained with EBUS-TBNA samples from mediastinal and hilar lymph nodes and masses. Review of pathology reports with a specific diagnosis obtained from EBUS-TBNA samples of mediastinal or hilar lesions, prospectively obtained over a two-year period. The generation of cell blocks from cytology needle samples, the contribution to morphological diagnosis, and the possible use of samples for immunohistochemistry were analysed. One hundred and twenty-nine samples corresponding to 110 patients were reviewed. The diagnosis was lung cancer in 81% of cases, extrapulmonary carcinoma in 10%, sarcoidosis in 4%, lymphoma in 2.7%, and tuberculosis in 0.9%. Cell blocks could be obtained in 72% of cases. Immunohistochemistry studies on the cell blocks were significantly easier to perform than on conventional smears (52.6% vs. 14%, P<.0001). In 4cases, the cell block provided an exclusive morphological diagnosis (3sarcoidosis and one metastasis from prostatic carcinoma) and in 3carcinomas, subtype and origin could be identified. Exclusive diagnoses from the cell block were significantly more frequent in benign disease than in malignant disease (25% vs 0.9%, P=.002). Cell blocks were obtained from 72% of EBUS-TBNA diagnostic procedures. The main contributions of cell blocks to pathology examinations were the possibility of carrying out immunohistochemical staining for the better classification of neoplasms, especially extrapulmonary metastatic tumours, and the improved diagnosis of benign lesions. Copyright © 2013 SEPAR. Published by Elsevier Espana. All rights reserved.

Optical differentiation between malignant and benign lymphadenopathy by grey scale texture analysis of endobronchial ultrasound convex probe images.

PubMed

Nguyen, Phan; Bashirzadeh, Farzad; Hundloe, Justin; Salvado, Olivier; Dowson, Nicholas; Ware, Robert; Masters, Ian Brent; Bhatt, Manoj; Kumar, Aravind Ravi; Fielding, David

2012-03-01

Morphologic and sonographic features of endobronchial ultrasound (EBUS) convex probe images are helpful in predicting metastatic lymph nodes. Grey scale texture analysis is a well-established methodology that has been applied to ultrasound images in other fields of medicine. The aim of this study was to determine if this methodology could differentiate between benign and malignant lymphadenopathy of EBUS images. Lymph nodes from digital images of EBUS procedures were manually mapped to obtain a region of interest and were analyzed in a prediction set. The regions of interest were analyzed for the following grey scale texture features in MATLAB (version 7.8.0.347 [R2009a]): mean pixel value, difference between maximal and minimal pixel value, SEM pixel value, entropy, correlation, energy, and homogeneity. Significant grey scale texture features were used to assess a validation set compared with fluoro-D-glucose (FDG)-PET-CT scan findings where available. Fifty-two malignant nodes and 48 benign nodes were in the prediction set. Malignant nodes had a greater difference in the maximal and minimal pixel values, SEM pixel value, entropy, and correlation, and a lower energy (P < .0001 for all values). Fifty-one lymph nodes were in the validation set; 44 of 51 (86.3%) were classified correctly. Eighteen of these lymph nodes also had FDG-PET-CT scan assessment, which correctly classified 14 of 18 nodes (77.8%), compared with grey scale texture analysis, which correctly classified 16 of 18 nodes (88.9%). Grey scale texture analysis of EBUS convex probe images can be used to differentiate malignant and benign lymphadenopathy. Preliminary results are comparable to FDG-PET-CT scan.

Differentiating benign from malignant mediastinal lymph nodes visible at EBUS using grey-scale textural analysis.

PubMed

Edey, Anthony J; Pollentine, Adrian; Doody, Claire; Medford, Andrew R L

2015-04-01

Recent data suggest that grey-scale textural analysis on endobronchial ultrasound (EBUS) imaging can differentiate benign from malignant lymphadenopathy. The objective of studies was to evaluate grey-scale textural analysis and examine its clinical utility. Images from 135 consecutive clinically indicated EBUS procedures were evaluated retrospectively using MATLAB software (MathWorks, Natick, MA, USA). Manual node mapping was performed to obtain a region of interest and grey-scale textural features (range of pixel values and entropy) were analysed. The initial analysis involved 94 subjects and receiver operating characteristic (ROC) curves were generated. The ROC thresholds were then applied on a second cohort (41 subjects) to validate the earlier findings. A total of 371 images were evaluated. There was no difference in proportions of malignant disease (56% vs 53%, P = 0.66) in the prediction (group 1) and validation (group 2) sets. There was no difference in range of pixel values in group 1 but entropy was significantly higher in the malignant group (5.95 vs 5.77, P = 0.03). Higher entropy was seen in adenocarcinoma versus lymphoma (6.00 vs 5.50, P < 0.05). An ROC curve for entropy gave an area under the curve of 0.58 with 51% sensitivity and 71% specificity for entropy greater than 5.94 for malignancy. In group 2, the entropy threshold phenotyped only 47% of benign cases and 20% of malignant cases correctly. These findings suggest that use of EBUS grey-scale textural analysis for differentiation of malignant from benign lymphadenopathy may not be accurate. Further studies are required. © 2015 Asian Pacific Society of Respirology.

Recent 121-year variability of western boundary upwelling in the northern South China Sea

NASA Astrophysics Data System (ADS)

Liu, Yi; Peng, Zicheng; Shen, Chuan-Chou; Zhou, Renjun; Song, Shaohua; Shi, Zhengguo; Chen, Tegu; Wei, Gangjian; Delong, Kristine L.

2013-06-01

upwelling is typically related to the eastern boundary upwelling system, whereas the powerful southwest Asian summer monsoon can also generate significant cold, nutrient-rich deep water in western coastal zones. Here we present a sea surface temperature record (A.D. 1876-1996) derived from coral Porites Sr/Ca for an upwelling zone in the northern South China Sea. The upwelling-induced sea surface temperature anomaly record reveals prominent multidecadal variability driven by Asian summer monsoon dynamics with an abrupt transition from warmer to colder conditions in 1930, and a return to warmer conditions after 1960. Previous studies suggest the expected increase in atmospheric CO2 for the coming decades may result in intensification in the eastern boundary upwelling system, which could enhance upwelling of CO2-rich deep water thus exacerbating the impact of acidification in these productive zones. In contrast, the weakening trend since 1961 in the upwelling time series from the northern South China Sea suggests moderate regional ocean acidification from upwelling thus a stress relief for marine life in this region.

Dynamics of a "low-enrichment high-retention" upwelling center over the southern Senegal shelf

NASA Astrophysics Data System (ADS)

Ndoye, Siny; Capet, Xavier; Estrade, Philippe; Sow, Bamol; Machu, Eric; Brochier, Timothée.; Döring, Julian; Brehmer, Patrice

2017-05-01

Senegal is the southern tip of the Canary upwelling system. Its coastal ocean hosts an upwelling center which shapes sea surface temperatures between latitudes 12° and 15°N. Near this latter latitude, the Cape Verde headland and a sudden change in shelf cross-shore profile are major sources of heterogeneity in the southern Senegal upwelling sector (SSUS). SSUS dynamics is investigated by means of Regional Ocean Modeling System simulations. Configuration realism and resolution (Δx≈ 2 km) are sufficient to reproduce the SSUS frontal system. Our main focus is on the 3-D upwelling circulation which turns out to be profoundly different from 2-D theory: cold water injection onto the shelf and upwelling are strongly concentrated within a few tens of kilometers south of Cape Verde and largely arise from flow divergence in the alongshore direction; a significant fraction of the upwelled waters are retained nearshore over long distances while travelling southward under the influence of northerly winds. Another source of complexity, regional-scale alongshore pressure gradients, also contributes to the overall retention of upwelled waters over the shelf. Varying the degree of realism of atmospheric and oceanic forcings does not appreciably change these conclusions. This study sheds light on the dynamics and circulation underlying the recurrent sea surface temperature pattern observed during the upwelling season and offers new perspectives on the connections between the SSUS physical environment and its ecosystems. It also casts doubt on the validity of upwelling intensity estimations based on simple Ekman upwelling indices at such local scales.

Lung cancer diagnosis and staging with endobronchial ultrasound-guided transbronchial needle aspiration compared with conventional approaches: an open-label, pragmatic, randomised controlled trial

PubMed Central

Navani, Neal; Nankivell, Matthew; Lawrence, David R; Lock, Sara; Makker, Himender; Baldwin, David R; Stephens, Richard J; Parmar, Mahesh K; Spiro, Stephen G; Morris, Stephen; Janes, Sam M

2015-01-01

Summary Background The diagnosis and staging of lung cancer is an important process that identifies treatment options and guides disease prognosis. We aimed to assess endobronchial ultrasound-guided transbronchial needle aspiration as an initial investigation technique for patients with suspected lung cancer. Methods In this open-label, multicentre, pragmatic, randomised controlled trial, we recruited patients who had undergone a CT scan and had suspected stage I to IIIA lung cancer, from six UK centres and randomly assigned them to either endobronchial ultrasound-guided transbronchial needle aspiration (EBUS-TBNA) or conventional diagnosis and staging (CDS), for further investigation and staging. If a target node could not be accessed by EBUS-TBNA, then endoscopic ultrasound-guided fine needle aspiration (EUS-FNA) was allowed as an alternative procedure. Randomisation was stratified according to the presence of mediastinal lymph nodes measuring 1 cm or more in the short axis and by recruiting centre. We used a telephone randomisation method with permuted blocks of four generated by a computer. Because of the nature of the intervention, masking of participants and consenting investigators was not possible. The primary endpoint was the time-to-treatment decision after completion of the diagnostic and staging investigations and analysis was by intention-to-diagnose. This trial is registered with ClinicalTrials.gov, number NCT00652769. Findings Between June 10, 2008, and July 4, 2011, we randomly allocated 133 patients to treatment: 66 to EBUS-TBNA and 67 to CDS (one later withdrew consent). Two patients from the EBUS-TBNA group underwent EUS-FNA. The median time to treatment decision was shorter with EBUS-TBNA (14 days; 95% CI 14–15) than with CDS (29 days; 23–35) resulting in a hazard ratio of 1·98, (1·39–2·82, p<0·0001). One patient in each group had a pneumothorax from a CT-guided biopsy sample; the patient from the CDS group needed intercostal drainage and was admitted to hospital. Interpretation Transbronchial needle aspiration guided by endobronchial ultrasound should be considered as the initial investigation for patients with suspected lung cancer, because it reduces the time to treatment decision compared with conventional diagnosis and staging techniques. Funding UK Medical Research Council. PMID:25660225

The relationship between Arabian Sea upwelling and Indian Monsoon revisited

NASA Astrophysics Data System (ADS)

Yi, Xing; Zorita, Eduardo; Hünicke, Birgit

2015-04-01

Coastal upwelling is important to marine ecosystems and human activities. It transports nutrient-rich deep water mass that supports marine biological productivity. In this study, we aim to characterize the large-scale climate forcings that drive upwelling along the western Arabian Sea coast. Studies based on ocean sediments suggest that there is a link between this coastal upwelling system and the Indian summer monsoon. However, a more direct method is needed to examine the influence of various forcings on upwelling. For this purpose, we analyse a high-resolution (about 10 km) global ocean simulation (denoted STORM), which is based on the MPI-OM model developed by the Max-Planck-Institute for Meteorology in Hamburg driven by the global meteorological reanalysis NCEP over the period 1950-2010. This very high spatial resolution allows us to identify characteristics of the coastal upwelling system. We compare the simulated upwelling velocity of STORM with two traditional upwelling indices: along-shore wind speed and sea surface temperature. The analysis reveals good consistency between these variables, with high correlations between coastal upwelling and along-shore wind speed (r=0.85) as well as coastal sea surface temperature (r=-0.77). To study the impact of the monsoon on the upwelling we analyse both temporal and spatial co-variability between upwelling velocity and the Indian summer monsoon index. The spatial analysis shows that the impact of the monsoon on the upwelling is concentrated along the coast, as expected. However, somewhat unexpectedly, the temporal correlation between the coastal upwelling and the monsoon index is rather weak (r=0.26). Also, the spatial structure of upwelling in the Arabian Sea as revealed by a Principal Component Analysis is rather rich, indicating that factors other than the Monsoon are also important drivers of upwelling. In addition, no detectable trend in our coastal upwelling is found in the simulation that would match the prediction of a strengthening of upwelling under anthropogenic radiative forcing.

Has upwelling strengthened along worldwide coasts over 1982-2010?

NASA Astrophysics Data System (ADS)

Varela, R.; Álvarez, I.; Santos, F.; Decastro, M.; Gómez-Gesteira, M.

2015-05-01

Changes in coastal upwelling strength have been widely studied since 1990 when Bakun proposed that global warming can induce the intensification of upwelling in coastal areas. Whether present wind trends support this hypothesis remains controversial, as results of previous studies seem to depend on the study area, the length of the time series, the season, and even the database used. In this study, temporal and spatial trends in the coastal upwelling regime worldwide were investigated during upwelling seasons from 1982 to 2010 using a single wind database (Climate Forecast System Reanalysis) with high spatial resolution (0.3°). Of the major upwelling systems, increasing trends were only observed in the coastal areas of Benguela, Peru, Canary, and northern California. A tendency for an increase in upwelling-favourable winds was also identified along several less studied regions, such as the western Australian and southern Caribbean coasts.

Has upwelling strengthened along worldwide coasts over 1982-2010?

PubMed Central

Varela, R.; Álvarez, I.; Santos, F.;  deCastro, M.; Gómez-Gesteira, M.

2015-01-01

Changes in coastal upwelling strength have been widely studied since 1990 when Bakun proposed that global warming can induce the intensification of upwelling in coastal areas. Whether present wind trends support this hypothesis remains controversial, as results of previous studies seem to depend on the study area, the length of the time series, the season, and even the database used. In this study, temporal and spatial trends in the coastal upwelling regime worldwide were investigated during upwelling seasons from 1982 to 2010 using a single wind database (Climate Forecast System Reanalysis) with high spatial resolution (0.3°). Of the major upwelling systems, increasing trends were only observed in the coastal areas of Benguela, Peru, Canary, and northern California. A tendency for an increase in upwelling-favourable winds was also identified along several less studied regions, such as the western Australian and southern Caribbean coasts. PMID:25952477

Life cycle strategies of copepods in coastal upwelling zones

NASA Astrophysics Data System (ADS)

Peterson, W.

1998-06-01

Life cycles of copepods of coastal upwelling zones are of the multigenerational type—as many as 10 or more generations may be produced each year, depending upon water temperature, food concentration and length of the upwelling season. Abundant food resources and moderate temperature convey advantages to those copepods living in coastal upwelling zones, however, there is a clear disadvantage in that coastal upwelling zones are highly advective environments. Typically, water circulation patterns are such that surface waters are carried offshore, deeper waters carried onshore and most of the water column over the continental shelf is moving equatorward. The challenge to copepod species that inhabit upwelling systems is life cycle closure—how do eggs, nauplii, juveniles and adults avoid being swept out of these ecosystems in the face of persistent transport out of the system? In this review, I first list the species which dominate coastal upwelling ecosystems then discuss three variations on the multigenerational life cycle scheme that are observed in upwelling systems. The latter part of the review is devoted to discussion of how individuals are retained in the productive continental shelf waters within coastal upwelling ecosystems. The suggestion is made that the only copepod species that successfully achieve life cycle closure in such systems are those that are preadapted to upwelling circulation patterns. Our quantitative understanding of the relative importance of physical factors (such as advection) and biological factors (birth, growth, and mortality) on life cycle strategies and population dynamics is quite rudimentary. It would help our understanding if there were more field studies and more computer modeling studies that focused on seasonal cycles of abundance, development times and vertical distribution of life cycle stages, and measurements of water circulation patterns.

Physical structure and algae community of summer upwelling off eastern Hainan

NASA Astrophysics Data System (ADS)

Xu, H.; Liu, S.; Xie, Q.; Hong, B.; Long, T.

2017-12-01

The upwelling system is the most productive ecosystem along the continental shelf of the northern South China Sea Shelf. It brings nutrient from bottom to surface and blooms biotic community driven by summer monsoon. In this study, we present observed results of physical and biotic community structures during August, 2015 in the upwelling system along Hainan eastern coast, which is one the strongest upwelling systems in the northern South China Sea. By using hydrological data collected by CTD, we found a significant cold water tongue with high salinity which extended from offshore to 100 m isobaths. However, dissolved oxygen (DO) showed a sandwich structure in which high core of DO concentration appeared at the layer from 5 m to 30 m. It possibly was caused by the advection transport of high DO from adjacent area. Basically, this upwelling system was constrained at northern area of 18.8ºN in horizontal due to the weakening summer monsoon in August. In addition, we collected water sample at the upwelling area and measured algae categories and concentration by high performance liquid chromatography (HPLC). Results show the biotic community was dominated by five types of algae mainly, they were diatoms, dinoflagellates, green algae, prokaryotes and prochlorococcus. And different patterns of different algae were demonstrated. In the upwelling area, diatoms and prokaryotes show opposite structures, and more complex pattern for the rest three algae indicating an active biotic community in the upwelling system.

Global climate change and intensification of coastal ocean upwelling.

PubMed

Bakun, A

1990-01-12

A mechanism exists whereby global greenhouse warning could, by intensifying the alongshore wind stress on the ocean surface, lead to acceleration of coastal upwelling. Evidence from several different regions suggests that the major coastal upwelling systems of the world have been growing in upwelling intensity as greenhouse gases have accumulated in the earth's atmosphere. Thus the cool foggy summer conditions that typify the coastlands of northern California and other similar upwelling regions might, under global warming, become even more pronounced. Effects of enhanced upwelling on the marine ecosystem are uncertain but potentially dramatic.

The future of coastal upwelling in the Humboldt current from model projections

NASA Astrophysics Data System (ADS)

Oyarzún, Damián; Brierley, Chris M.

2018-03-01

The Humboldt coastal upwelling system in the eastern South Pacific ocean is one of the most productive marine ecosystems in the world. A weakening of the upwelling activity could lead to severe ecological impacts. As coastal upwelling in eastern boundary systems is mainly driven by wind stress, most studies so far have analysed wind patterns change through the 20th and 21st Centuries in order to understand and project the phenomenon under specific forcing scenarios. Mixed results have been reported, and analyses from General Circulation Models have suggested even contradictory trends of wind stress for the Humboldt system. In this study, we analyse the ocean upwelling directly in 13 models contributing to phase 5 of the Coupled Model Intercomparison Project (CMIP5) in both the historical simulations and an extreme climate change scenario (RCP8.5). The upwelling is represented by the upward ocean mass flux, a newly-included variable that represents the vertical water transport. Additionally, wind stress, ocean stratification, Ekman layer depth and thermocline depth were also analysed to explore their interactions with coastal upwelling throughout the period studied. The seasonal cycle of coastal upwelling differs between the Northern and Southern Humboldt areas. At lower latitudes, the upwelling season spans most of the autumn, winter and spring. However, in the Southern Humboldt area the upwelling season takes place in spring and the summertime with downwelling activity in winter. This persists throughout the Historical and RCP8.5 simulations. For both the Northern and Southern Humboldt areas an increasing wind stress is projected. However, different trends of upwelling intensity are observed away from the sea surface. Whereas wind stress will continue controlling the decadal variability of coastal upwelling on the whole ocean column analysed (surface to 300 m depth), an increasing disconnect with upwelling intensity is projected below 100 m depth throughout the 21st Century. This relates to an intensification of ocean stratification under global warming as shown by the sea water temperature profiles. Additionally, a divergence between the Ekman layer and thermocline depths is also evidenced. Given the interaction of upwelled nutrients and microscopic organisms essential for fish growth, a potential decline of coastal upwelling at depth could lead to unknown ecological and socio-economical effects.

An update on the role of advanced diagnostic bronchoscopy in the evaluation and staging of lung cancer

PubMed Central

Belanger, Adam R.; Akulian, Jason A.

2017-01-01

Lung cancer remains a common and deadly disease. Many modalities are available to the bronchoscopist to evaluate and stage lung cancer. We review the role of bronchoscopy in the staging of the mediastinum with convex endobronchial ultrasound (EBUS) and discuss emerging role of esophageal ultrasonography as a complementary modality. In addition, we discuss advances in scope technology and elastography. We review the bronchoscopic methods available for the diagnosis of peripheral lung nodules including radial EBUS and navigational bronchoscopy (NB) with a consideration of the basic methodologies and diagnostic accuracies. We conclude with a discussion of the comparison of the various methodologies. PMID:28470104

Combined Quarterly Technical Report Number 25. SATNET Development and Operation, Pluribus Satellite IMP Development, Remote Site Maintenance, Internet Operations and Maintenance, Mobile Access Terminal Network, TCP for the HP3000, TCP for VAX-UNIX.

DTIC Science & Technology

1982-05-01

the F-Bus. The two possible SuperSUE I Pollers, SSPE and SSPF, are on the E and F buses, respectively. P13 is the P13 Poller. A PSAT will have at... SSPE and SSPF are again the two possible SuperSUE Pollers. HPOL is an abbrevation for the HINPOL and HOUTPOL routines. -44- jReport No. 5003 Bolt...I IS I E-Bus,F-Bus I E-Bus Only I F-Bus only I s -- - - - - - - - - - - - - - - - - -- - - - - - P E-Bus ISMIE/ SSPE ISMIE/ SSPE ISMIF/SSPF IF-Bu3

Nutrient supply, surface currents, and plankton dynamics predict zooplankton hotspots in coastal upwelling systems

NASA Astrophysics Data System (ADS)

Messié, Monique; Chavez, Francisco P.

2017-09-01

A simple combination of wind-driven nutrient upwelling, surface currents, and plankton growth/grazing equations generates zooplankton patchiness and hotspots in coastal upwelling regions. Starting with an initial input of nitrate from coastal upwelling, growth and grazing equations evolve phytoplankton and zooplankton over time and space following surface currents. The model simulates the transition from coastal (large phytoplankton, e.g., diatoms) to offshore (picophytoplankton and microzooplankton) communities, and in between generates a large zooplankton maximum. The method was applied to four major upwelling systems (California, Peru, Northwest Africa, and Benguela) using latitudinal estimates of wind-driven nitrate supply and satellite-based surface currents. The resulting zooplankton simulations are patchy in nature; areas of high concentrations coincide with previously documented copepod and krill hotspots. The exercise highlights the importance of the upwelling process and surface currents in shaping plankton communities.

EBUS-Guided Cautery-Assisted Transbronchial Forceps Biopsies: Safety and Sensitivity Relative to Transbronchial Needle Aspiration

PubMed Central

Bramley, Kyle; Pisani, Margaret A.; Murphy, Terrence E.; Araujo, Katy; Homer, Robert; Puchalski, Jonathan

2016-01-01

Background EBUS-guided transbronchial needle aspiration (TBNA) is important in the evaluation of thoracic lymphadenopathy. Reliably providing excellent diagnostic yield for malignancy, its diagnosis of sarcoidosis is inconsistent. Furthermore, when larger “core” biopsy samples of malignant tissue are required, TBNA may not suffice. The primary objective of this study was to determine if the sequential use of TBNA and a novel technique called cautery-assisted transbronchial forceps biopsies (ca-TBFB) was safe. Secondary outcomes included sensitivity and successful acquisition of tissue. Methods Fifty unselected patients undergoing convex probe EBUS were prospectively enrolled. Under EBUS guidance, all lymph nodes ≥ 1 cm were sequentially biopsied using TBNA and ca-TBFB. Safety and sensitivity were assessed at the nodal level for 111 nodes. Results of each technique were also reported on a per-patient basis. Results There were no significant adverse events. In nodes determined to be malignant, TBNA provided higher sensitivity (100%) than ca-TBFB (78%). However, among nodes with granulomatous inflammation, ca-TBFB exhibited higher sensitivity (90%) than TBNA (33%). For analysis based on patients rather than nodes, 6 of the 31 patients with malignancy would have been missed or understaged if the diagnosis was based on samples obtained by ca-TBFB. On the other hand, 3 of 8 patients with sarcoidosis would have been missed if analysis was based only on TBNA samples. In some cases only ca-TBFB acquired sufficient tissue for the core samples needed in clinical trials of malignancy. Conclusions The sequential use of TBNA and ca-TBFB appears to be safe. The larger samples obtained from ca-TBFB increased its sensitivity to detect granulomatous disease and provided specimens for clinical trials of malignancy when needle biopsies were insufficient. For thoracic surgeons and advanced bronchoscopists, we advocate ca-TBFB as an alternative to TBNA in select clinical scenarios. PMID:26912301

Endobronchial Ultrasound for Nodal Staging of Non-Small Cell Lung Cancer Patients with Radiologically Normal Mediastinum: A Meta-Analysis.

PubMed

El-Osta, Hazem; Jani, Pushan; Mansour, Ali; Rascoe, Philip; Jafri, Syed

2018-04-23

An accurate assessment of the mediastinal lymph nodes status is essential in the staging and treatment planning of potentially resectable non-small cell lung cancer (NSCLC). We performed this meta-analysis to evaluate the role of endobronchial ultrasound-guided transbronchial needle aspiration (EBUS-TBNA) in detecting occult mediastinal disease in NSCLC with no radiologic mediastinal involvement. The PubMed, Embase, and Cochrane libraries were searched for studies describing the role of EBUS-TBNA in lung cancer patients with radiologically negative mediastinum. The individual and pooled sensitivity, prevalence, negative predictive value (NPV), and diagnostic odds ratio (DOR) were calculated using the random effects model. Metaregression analysis, heterogeneity, and publication bias were also assessed. A total of 13 studies that met the inclusion criteria were included in the meta-analysis. The pooled effect size of the different diagnostic parameters were estimated as follows: prevalence, 12.8% (95% CI, 10.4%-15.7%); sensitivity, 49.5% (95% confidence interval [CI], 36.4%-62.6%); NPV, 93.0% (95% CI, 90.3%-95.0%); and log DOR, 5.069 (95% CI, 4.212-5.925). Significant heterogeneity was noticeable for the sensitivity, disease prevalence, and NPV, but not observed for log DOR. Publication bias was detected for sensitivity, NPV and log DOR but not for prevalence. Bivariate meta-regression analysis showed no significant association between the pooled calculated parameters and the type of anesthesia, imaging utilized to define negative mediastinum, rapid on-site test usage, and presence of bias by QUADAS-2 tool. Interestingly, we observed a greater sensitivity, NPV and log DOR for studies published prior to 2010, and for prospective multicenter studies. Among NSCLC patients with a radiologically normal mediastinum, the prevalence of mediastinal disease is 12.8% and the sensitivity of EBUS-TBNA is 49.5%. Despite the low sensitivity, the resulting NPV of 93.0% for EBUS-TBNA suggests that mediastinal metastasis is uncommon in such patients.

Diatoms Si uptake capacity drives carbon export in coastal upwelling systems

NASA Astrophysics Data System (ADS)

Abrantes, Fatima; Cermeno, Pedro; Lopes, Cristina; Romero, Oscar; Matos, Lélia; Van Iperen, Jolanda; Rufino, Marta; Magalhães, Vitor

2016-07-01

Coastal upwelling systems account for approximately half of global ocean primary production and contribute disproportionately to biologically driven carbon sequestration. Diatoms, silica-precipitating microalgae, constitute the dominant phytoplankton in these productive regions, and their abundance and assemblage composition in the sedimentary record is considered one of the best proxies for primary production. The study of the sedimentary diatom abundance (SDA) and total organic carbon content (TOC) in the five most important coastal upwelling systems of the modern ocean (Iberia-Canary, Benguela, Peru-Humboldt, California, and Somalia-Oman) reveals a global-scale positive relationship between diatom production and organic carbon burial. The analysis of SDA in conjunction with environmental variables of coastal upwelling systems such as upwelling strength, satellite-derived net primary production, and surface water nutrient concentrations shows different relations between SDA and primary production on the regional scale. On the global scale, SDA appears modulated by the capacity of diatoms to take up silicic acid, which ultimately sets an upper limit to global export production in these ocean regions.

Detection of an embolized central venous catheter fragment with endobronchial ultrasound.

PubMed

Dhillon, Samjot Singh; Harris, Kassem; Alraiyes, Abdul H; Picone, Anthony L

2018-01-01

An 84-year-old woman underwent Convex-probe Endobronchial Ultrasound (CP-EBUS) for 18 F-fluorodeoxyglucose avid subcarinal lymphadenopathy on Positron Emission Tomogram (PET) scan. Endobronchial ultrasound-guided transbronchial needle aspiration of the subcarinal lymph node revealed squamous cell lung carcinoma. A small hyperechoic rounded density was noted inside the lumen of the azygous vein. Based on chest computed tomography findings and her clinical history, this was felt to be a broken fragment of a peripherally inserted central catheter, which was placed for intravenous antibiotics, a few months prior to this presentation. To the best of our knowledge, this is the first ever CP-EBUS description of a broken fragment of central venous catheter. © 2016 John Wiley & Sons Ltd.

The role of bronchoscopy in the diagnosis of airway disease

PubMed Central

Dixon, Jennifer; Tieu, Brandon H.

2016-01-01

Endoscopy of the airway is a valuable tool for the evaluation and management of airway disease. It can be used to evaluate many different bronchopulmonary diseases including airway foreign bodies, tumors, infectious and inflammatory conditions, airway stenosis, and bronchopulmonary hemorrhage. Traditionally, options for evaluation were limited to flexible and rigid bronchoscopy. Recently, more sophisticated technology has led to the development of endobronchial ultrasound (EBUS) and electromagnetic navigational bronchoscopy (ENB). These technological advances, combined with increasing provider experience have resulted in a higher diagnostic yield with endoscopic biopsies. This review will focus on the role of bronchoscopy, including EBUS, ENB, and rigid bronchoscopy in the diagnosis of bronchopulmonary diseases. In addition, it will cover the anesthetic considerations, equipment, diagnostic yield, and potential complications. PMID:28149583

The relationship between Arabian Sea upwelling and Indian monsoon revisited

NASA Astrophysics Data System (ADS)

Yi, X.; Hünicke, B.; Tim, N.; Zorita, E.

2015-11-01

Studies based on upwelling indices (sediment records, sea-surface temperature and wind) suggest that upwelling along the western coast of Arabian Sea is strongly affected by the Indian summer monsoon (ISM). In order to examine this relationship directly, we employ the vertical water mass transport produced by the eddy-resolving global ocean simulation STORM driven by meteorological reanalysis over the last 61 years. With its very high spatial resolution (10 km), STORM allows us to identify characteristics of the upwelling system. We analyze the co-variability between upwelling and meteorological and oceanic variables from 1950 to 2010. The analyses reveal high interannual correlations between coastal upwelling and along-shore wind-stress (r=0.73) as well as with sea-surface temperature (r0.83). However, the correlation between the upwelling and the ISM is small and other factors might contribute to the upwelling variability. In addition, no long-term trend is detected in our modeled upwelling time series.

Spatio-Temporal Variation in Effects of Upwelling on the Fatty Acid Composition of Benthic Filter Feeders in the Southern Benguela Ecosystem: Not All Upwelling Is Equal

PubMed Central

McQuaid, Christopher David; Noyon, Margaux

2016-01-01

Variability in mesoscale nearshore oceanographic conditions plays an important role in the distribution of primary production and food availability for intertidal consumers. Advection of nutrient rich waters by upwelling usually allows the proliferation of diatoms, later replaced by dinoflagellates. We examined upwelling effects on the fatty acid (FA) signature of a benthic intertidal filter feeder to identify its response to pulsed variability in food availability. The study took place in two contrasting seasons and at two upwelling and two non-upwelling sites interspersed within the southern Benguela upwelling system of South Africa. We investigated the FA composition of the adductor muscles and gonads of the mussel Mytilus galloprovincialis to assess how FA are apportioned to the different tissues and whether this changes between upwelling and non-upwelling conditions. In situ temperature loggers used to identify upwelling conditions at the four sites indicated that such events occurred only at the upwelling centres and only in summer. Tissues differed strongly, with gonads presenting a higher proportion of essential FAs. This could reflect the faster turnover rate of gonad tissue or preferential retention of specific FA for reproductive purposes. FA composition did not vary as a direct function of upwelling, but there were strong dissimilarities among sites. Upwelling influenced mussel diets at one upwelling site while at the other, the expected signature of upwelling was displaced downstream of the core of upwelling. Condition Index (CI) and Gonad Index (GI) differed among sites and were not influenced by upwelling, with GI being comparable among sites. In addition, FA proportions were consistent among sites, indicating similar food quality and quantity over time and under upwelling and non-upwelling conditions. This suggests that the influence of upwelling on the west coast of South Africa is pervasive and diffuse, rather than discrete; while nearshore retention or advection of upwelled water is critical and site-specific so that the effects of upwelling differ even among sites categorised as upwelling centres. PMID:27570968

Association of whale sharks (Rhincodon typus) with thermo-biological frontal systems of the eastern tropical Pacific.

PubMed

Ryan, John P; Green, Jonathan R; Espinoza, Eduardo; Hearn, Alex R

2017-01-01

Satellite tracking of 27 whale sharks in the eastern tropical Pacific, examined in relation to environmental data, indicates preferential occupancy of thermo-biological frontal systems. In these systems, thermal gradients are caused by wind-forced circulation and mixing, and biological gradients are caused by associated nutrient enrichment and enhanced primary productivity. Two of the frontal systems result from upwelling, driven by divergence in the current systems along the equator and the west coast of South America; the third results from wind jet dynamics off Central America. All whale sharks were tagged near Darwin Island, Galápagos, within the equatorial Pacific upwelling system. Occupancy of frontal habitat is pronounced in synoptic patterns of shark locations in relation to serpentine, temporally varying thermal fronts across a zonal expanse > 4000 km. 80% of shark positions in northern equatorial upwelling habitat and 100% of positions in eastern boundary upwelling habitat were located within the upwelling front. Analysis of equatorial shark locations relative to thermal gradients reveals occupancy of a transition point in environmental stability. Equatorial subsurface tag data show residence in shallow, warm (>22°C) water 94% of the time. Surface zonal current speeds for all equatorial tracking explain only 16% of the variance in shark zonal movement speeds, indicating that passive drifting is not a primary determinant of movement patterns. Movement from equatorial to eastern boundary frontal zones occurred during boreal winter, when equatorial upwelling weakens seasonally. Off Peru sharks tracked upwelling frontal positions within ~100-350 km from the coast. Off Central America, the largest tagged shark (12.8 m TL) occupied an oceanic front along the periphery of the Panama wind jet. Seasonal movement from waning equatorial upwelling to productive eastern boundary habitat is consistent with underlying trophic dynamics. Persistent shallow residence in thermo-biological frontal zones suggests the role of physical-biological interactions that concentrate food resources.

Association of whale sharks (Rhincodon typus) with thermo-biological frontal systems of the eastern tropical Pacific

PubMed Central

Green, Jonathan R.; Espinoza, Eduardo; Hearn, Alex R.

2017-01-01

Satellite tracking of 27 whale sharks in the eastern tropical Pacific, examined in relation to environmental data, indicates preferential occupancy of thermo-biological frontal systems. In these systems, thermal gradients are caused by wind-forced circulation and mixing, and biological gradients are caused by associated nutrient enrichment and enhanced primary productivity. Two of the frontal systems result from upwelling, driven by divergence in the current systems along the equator and the west coast of South America; the third results from wind jet dynamics off Central America. All whale sharks were tagged near Darwin Island, Galápagos, within the equatorial Pacific upwelling system. Occupancy of frontal habitat is pronounced in synoptic patterns of shark locations in relation to serpentine, temporally varying thermal fronts across a zonal expanse > 4000 km. 80% of shark positions in northern equatorial upwelling habitat and 100% of positions in eastern boundary upwelling habitat were located within the upwelling front. Analysis of equatorial shark locations relative to thermal gradients reveals occupancy of a transition point in environmental stability. Equatorial subsurface tag data show residence in shallow, warm (>22°C) water 94% of the time. Surface zonal current speeds for all equatorial tracking explain only 16% of the variance in shark zonal movement speeds, indicating that passive drifting is not a primary determinant of movement patterns. Movement from equatorial to eastern boundary frontal zones occurred during boreal winter, when equatorial upwelling weakens seasonally. Off Peru sharks tracked upwelling frontal positions within ~100–350 km from the coast. Off Central America, the largest tagged shark (12.8 m TL) occupied an oceanic front along the periphery of the Panama wind jet. Seasonal movement from waning equatorial upwelling to productive eastern boundary habitat is consistent with underlying trophic dynamics. Persistent shallow residence in thermo-biological frontal zones suggests the role of physical-biological interactions that concentrate food resources. PMID:28854201

Heavy Duty Diesel Truck and Bus Hybrid Powertrain Study

DTIC Science & Technology

2012-03-01

electric 22 ft. bus that offers greater range than battery-electric buses can provide. Designed to seat 22 passengers plus standees, this Ebus model...system that has both parallel and series operating modes. The relatively low volume of many truck and bus designs has inhibited the development of...that battery packs need to be designed for 50,000 lifetime energy storage cycles in a hybrid transit bus vs. just 3,600 cycles in the typical

Observed impact of upwelling events on water properties and biological activity off the southwest coast of New Caledonia.

PubMed

Ganachaud, Alexandre; Vega, Andrés; Rodier, Martine; Dupouy, Cécile; Maes, Christophe; Marchesiello, Patrick; Eldin, Gerard; Ridgway, Ken; Le Borgne, Robert

2010-01-01

The upwelling events that follow strong trade wind episodes have been described in terms of their remarkable signature in the sea surface temperature southwest off New Caledonia. Upwelling brings deeper, and colder waters to the surface, causing 2-4 degrees C drops in temperature in a few hours, followed by a slower relaxation over several days. Upwelling may sporadically bring nutrients to the surface under certain conditions, and increase the biological productivity. Two multidisciplinary hydrographic cruises allow the impact of upwelling on the chemical and biological properties of the water to be documented. Both cruises took place in austral summer (December 2004 and December 2005), but the first cruise occurred during a strong upwelling event, while the second cruise occurred in calm conditions. The water properties and planktonic composition show important contrasts, with a strong southeastward current (the "ALIS current of New Caledonia") competing with the upwelling system. Our analysis suggests that, while observed productivities are far less than those of typical upwelling systems, some wind events in New Caledonia may contribute to biological activity. A currentmeter mooring, deployed during the second cruise, documents the ocean response to a changing wind field and the local impact of upwelling on currents and temperatures on the water column. The results are discussed, with the help of climatology, Argo float profiler data, satellite data and of a high-resolution numerical simulation. Copyright (c) 2010 Elsevier Ltd. All rights reserved.

Patterns of primary productivity and biomass in a coastal upwelling region

NASA Astrophysics Data System (ADS)

Small, Lawrence F.; Menzies, David W.

1981-02-01

Average distributions of chlorophyll α during upwelling in areas of smooth bathymetry off Oregon have been computed from historical data. Chlorophyll concentrations in cross-shelf sections over the Oregon continental shelf (44°40'N) were similar to those in cross-shelf sections off northwest Africa during JOINT-1 studies but differed from those in similar sections over an adjacent narrow region of the Oregon shelf (44°55'N to 45°12'N). The fact that larger concentration differences can occur along short sections of one coastline than between upwelling regions half a world apart bears on the time and space scales of sampling and might have bearing on the support and distributions of other trophic levels. Relationships between the local winds and the broader-scale BAKUN (1975) upwelling indices were used to classify various phytoplankton biomass and primary productivity distributions according to whether they were in strong upwelling steady state, weak upwelling steady state, or one of two transition states. The upwelling steady state conforms to the 'upwelling event' scale (about 3 to 10 days) of WALSH, WHITLEDGE, KELLEY, HUNTSMAN and PILLSBURY (1977) and the transition state of approximately one-day duration might specify the critical scale for driving the upwelling off Oregon. Under strong steady-state upwelling in early summer a single band of high primary productivity and biomass develops in the surface layer parallel to the bottom contours, but under similar upwelling conditions in later summer a two-celled zonal circulation occurs and two parallel bands develop. Our strong upwelling distributions are discussed in light of current models of the Oregon upwelling system. Maintenance of biological properties through time in the upwelling bands is also discussed. Under weak steady-state upwelling the primary productivity and biomass bands are farther inshore or immediately against the coast. Productivity in the weak upwelling bands can be twice that of the strong upwelling bands and often 20 times that in surrounding water. Under transient conditions in which the local winds are favorable for strong upwelling but the slower-responding Bakun index indicates weak upwelling, chlorophyll distributions change within a day to resemble distributions during strong steady-state upwelling. Under transient conditions in which the local winds weaken dramatically but the Bakun index still indicates strong upwelling, chlorophyll concentrations are high and widely distributed throughout the upwelling region.

Pliocene Warm Period Upwelling in the Southern Benguela Region

NASA Astrophysics Data System (ADS)

Petrick, B. F.; McClymont, E.; Felder, S.; Leng, M. J.; Rosell Mele, A.; Rueda, G.

2014-12-01

The mid-Pliocene has been proposed as a possible analogue for understanding future climate change and testing climate models. Previous work has shown that during the Pliocene the major upwelling systems were relatively warm, and thus either inactive, contracted, or upwelling warmer waters than present. Here we examine evidence from a core site located on the margins of the modern Benguela upwelling system, to test whether the upwelling cells had migrated or contracted relative to present during the Pliocene. We applied several organic geochemistry proxies and foraminiferal analyses to reconstruct the Pliocene history of ODP site 1087 (31º28'S, 15º19'E, 1374m water depth), including the UK37' index and TEX86 index (for reconstructing sea surface temperatures), chlorins (for estimating primary productivity) and planktonic foraminifera assemblages (for inferring water mass changes). These proxies show that between 3.5 and 3.0 Ma the southern Benguela region was significantly cooler than the northern Benguela region, the latter where the main upwelling cells are found today. Coupled with higher primary production, a shift in planktonic foraminifera assemblage, and an offset between the UK37' index and TEX86 index, we infer that more extensive upwelling was present in the southern Benguela region during the Pliocene. We infer that the main Benguela upwelling cells had shifted southward relative to today, as a result of changes in the local wind field. We find evidence for pronounced cooling and a shift in the planktonic foraminifera assemblage during the M2 and KM2 glacial stages, showing a sensitivity of Benguela upwelling to these short-lived climate events.

EBUS-TBNA Provides Highest RNA Yield for Multiple Biomarker Testing from Routinely Obtained Small Biopsies in Non-Small Cell Lung Cancer Patients - A Comparative Study of Three Different Minimal Invasive Sampling Methods

PubMed Central

Schmid-Bindert, Gerald; Wang, Yongsheng; Jiang, Hongbin; Sun, Hui; Henzler, Thomas; Wang, Hao; Pilz, Lothar R.; Ren, Shengxiang; Zhou, Caicun

2013-01-01

Background Multiple biomarker testing is necessary to facilitate individualized treatment of lung cancer patients. More than 80% of lung cancers are diagnosed based on very small tumor samples. Often there is not enough tissue for molecular analysis. We compared three minimal invasive sampling methods with respect to RNA quantity for molecular testing. Methods 106 small biopsies were prospectively collected by three different methods forceps biopsy, endobronchial ultrasound (EBUS) guided transbronchial needle aspiration (TBNA), and CT-guided core biopsy. Samples were split into two halves. One part was formalin fixed and paraffin embedded for standard pathological evaluation. The other part was put in RNAlater for immediate RNA/DNA extraction. If the pathologist confirmed the diagnosis of non-small cell lung cancer(NSCLC), the following molecular markers were tested: EGFR mutation, ERCC1, RRM1 and BRCA1. Results Overall, RNA-extraction was possible in 101 out of 106 patients (95.3%). We found 49% adenocarcinomas, 38% squamouscarcinomas, and 14% non-otherwise-specified(NOS). The highest RNA yield came from endobronchial ultrasound guided needle aspiration, which was significantly higher than bronchoscopy (37.74±41.09 vs. 13.74±15.53 ng respectively, P = 0.005) and numerically higher than CT-core biopsy (37.74±41.09 vs. 28.72±44.27 ng respectively, P = 0.244). EGFR mutation testing was feasible in 100% of evaluable patients and its incidence was 40.8%, 7.9% and 14.3% in adenocarcinomas, squamouscarcinomas and NSCLC NOS subgroup respectively. There was no difference in the feasibility of molecular testing between the three sampling methods with feasibility rates for ERCC1, RRM1 and BRCA1 of 91%, 87% and 81% respectively. Conclusion All three methods can provide sufficient tumor material for multiple biomarkers testing from routinely obtained small biopsies in lung cancer patients. In our study EBUS guided needle aspiration provided the highest amount of tumor RNA compared to bronchoscopy or CT guided core biopsy. Thus EBUS should be considered as an acceptable option for tissue acquisition for molecular testing. PMID:24205040

Growth and production of the copepod community in the southern area of the Humboldt Current System

NASA Astrophysics Data System (ADS)

Escribano, R.; Bustos-Ríos, E.; Hidalgo, P.; Morales, C. E.

2015-02-01

Zooplankton production is a critical issue for understanding marine ecosystem structure and dynamics, however, its time-space variations are mostly unknown in most systems. In this study, estimates of copepod growth and production (CP) in the coastal upwelling and coastal transition zones off central-southern Chile (∼35-37° S) were obtained from annual cycles during a 3 year time series (2004, 2005, and 2006) at a fixed shelf station and from spring-summer surveys during the same years. C-specific growth rates (g) varied extensively among species and under variable environmental conditions; however, g values were not correlated to either near surface temperature or copepod size. Copepod biomass (CB) and CP were higher within the coastal upwelling zone (<50 km) and both decreased substantially from 2004 to 2006. Annual CP ranged between 24 and 52 g C m-2 year-1 with a~mean annual P/B ratio of 2.7. We estimated that CP could consume up to 60% of the annual primary production (PP) in the upwelling zone but most of the time is around 8%. Interannual changes in CB and CP values were associated with changes in the copepod community structure, the dominance of large-sized forms replaced by small-sized species from 2004 to 2006. This change was accompanied by more persistent and time extended upwelling during the same seasonal period. Extended upwelling may have caused large losses of CB from the upwelling zone due to an increase in offshore advection of coastal plankton. On a larger scale, these results suggest that climate-related impacts of increasing wind-driven upwelling in coastal upwelling systems may generate a negative trend in zooplankton biomass.

Variability and Dynamics of the Yucatan Upwelling: High-Resolution Simulations

NASA Astrophysics Data System (ADS)

Jouanno, J.; Pallàs-Sanz, E.; Sheinbaum, J.

2018-02-01

The Yucatan shelf in the southern Gulf of Mexico is under the influence of an upwelling that uplifts cool and nutrient rich waters over the continental shelf. The analysis of a set of high-resolution (Δx = Δy ≈ 2.8 km) simulations of the Gulf of Mexico shows two dominant modes of variability of the Yucatan upwelling system: (1) a low-frequency mode related to variations in position and intensity of the Loop Current along the shelf, with upwelling intensified when the Loop Current is strong and approaches to the Yucatan shelf break and (2) a high-frequency mode with peak frequency in the 6-10 days band related to wind-forced coastal waves that force vertical velocities along the eastern Yucatan shelf break. To first order, the strength and position of the Loop Current are found to control the intensity of the upwelling, but we show that high-frequency winds also contribute (˜17%) to a net input of cool waters (<22.5°C) on the Yucatan shelf. Finally, although more observational studies are needed to corroborate the topographic character of the Yucatan upwelling system, this study reveals the key role played by a notch along the Yucatan shelf break: a sensitivity simulation without the notch shows a 55% reduction of the upwelling.

The relationship between Arabian Sea upwelling and Indian Monsoon revisited in a high resolution ocean simulation

NASA Astrophysics Data System (ADS)

Yi, Xing; Hünicke, Birgit; Tim, Nele; Zorita, Eduardo

2018-01-01

Studies based on sediment records, sea-surface temperature and wind suggest that upwelling along the western coast of Arabian Sea is strongly affected by the Indian summer Monsoon. We examine this relationship directly in an eddy-resolving global ocean simulation STORM driven by atmospheric reanalysis over the last 61 years. With its very high spatial resolution (10 km), STORM allows us to identify characteristics of the upwelling system. We analyse the co-variability between upwelling and meteorological and oceanic variables from 1950 to 2010. The analysis reveals high interannual correlations between coastal upwelling and along-shore wind-stress (r = 0.73) as well as with sea-surface temperature (r = -0.83). However, the correlation between the upwelling and the Monsoon is small. We find an atmospheric circulation pattern different from the one that drives the Monsoon as the main modulator of the upwelling variability. In spite of this, the patterns of temperature anomalies that are either linked to Arabian Sea upwelling or to the Monsoon are spatially quite similar, although the physical mechanisms of these links are different. In addition, no long-term trend is detected in our modelled upwelling in the Arabian Sea.

Benguela upwelling response during intervals of global climate transition

NASA Astrophysics Data System (ADS)

Shrivastava, Ankush; Sinha, Devesh; Singh, Ashutosh; Ramesh, Rengaswamy

2017-04-01

In the present study sedimentary records from the southeast Atlantic ocean were used for reconstructing the variability of Benguela upwelling system as well as the Interoceanic exchange between Indian and Atlantic Oceans during the critical intervals. Planktic foraminiferal assemblage data revealed diminished upwelling in the Benguela upwelling region during the Pliocene warm interval (3.7-3 Ma) which is in contrast to the model reconstructions by Wang et al., 2015 proposing intensification of upwelling with projected future warming. Gradual intensification of Benguela upwelling was interpreted during the Pliocene - Pleistocene transition (3-2.5 Ma). Enhanced Benguela upwelling during the Northern Hemisphere Glaciation supposed to have played a major role in the drawdown of atmospheric carbon dioxide after Pliocene warmth interval (3.7-3 Ma). Enhanced Benguela upwelling also occurred during Mid- Pleistocene transition (1-0.7 Ma). Reduced interoceanic exchange has been identified between Indian and Atlantic ocean during Northern Hemisphere glaciation (2.5- 2 Ma) and Mid-Pleistocene transition (1- 0.7 Ma). Equatorward migration of subtropical fronts during these two intervals was probably responsible for the reduced interoceanic exchange. Keywords: Pliocene-Pleistocene transition, Mid- Pleistocene transition, Benguela upwelling, Interoceanic exchange

Does mesoscale matters in decadal changes observed in the northern Canary upwelling system?

NASA Astrophysics Data System (ADS)

Relvas, P.; Luís, J.; Santos, A. M. P.

2009-04-01

The Western Iberia constitutes the northern limb of the Canary Current Upwelling System, one of the four Eastern Boundary Upwelling Systems of the world ocean. The strong dynamic link between the atmosphere and the ocean makes these systems highly sensitive to global change, ideal to monitor and investigate its effects. In order to investigate decadal changes of the mesoscale patterns in the Northern Canary upwelling system (off Western Iberia), the field of the satellite-derived sea surface temperature (SST) trends was built at the pixel scale (4x4 km) for the period 1985-2007, based on the monthly mean data from the Advanced Very High Resolution Radiometer (AVHRR) on board NOAA series satellites, provided by the NASA Physical Oceanography Distributed Active Archive Center (PO.DAAC) at the Jet Propulsion Laboratory. The time series were limited to the nighttime passes to avoid the solar heating effect and a suite of procedures were followed to guarantee that the temperature trends were not biased towards the seasonally more abundant summer data, when the sky is considerably clear. A robust linear fit was applied to each individual pixel, crossing along the time the same pixel in all the processed monthly mean AVHRR SST images from 1985 until 2007. The field of the SST trends was created upon the slopes of the linear fits applied to each pixel. Monthly mean SST time series from the one degree enhanced International Comprehensive Ocean-Atmosphere Data Set (ICOADS) and from near-shore measurements collected on a daily basis by the Portuguese Meteorological Office (IM) are also used to compare the results and extend the analysis back until 1960. A generalized warming trend is detected in the coastal waters off Western Iberia during the last decades, no matter which data set we analyse. However, significant spatial differences in the warming rates are observed in the satellite-derived SST trends. Remarkably, off the southern part of the Western Iberia the known upwelling pattern is clearly reflected in the warming field. There, the coastal upwelled waters show a weak warming trend when compared with the offshore waters. If we assume that the SST contrast between coastal and offshore waters is a proxy for the upwelling intensity, then this fact suggests the enhancement of the upwelling regime off SW Iberia since 1985. Although the seasonal nature of the upwelling in the region, the strengthening must be significant since it leaves a coherent imprint in the annual warming field. An analysis done on a monthly basis reveals that the central months of the classical upwelling season (July to September) are the responsible for this coherent mesoscale structure observed in the warming field off SW Iberia. The same conclusions are not clear for the mesoscale structure further north, where no significant differences are observed between the coastal and offshore warming rates. To investigate if our results, obtained for the period with satellite coverage (1985-2007), could be extended or not until 1960, we computed an upwelling index as the SST difference between coastal and offshore ICOADS SST. The analysis revealed that the trends are different whether we consider the whole time series or only the period investigated with the satellite imagery. We can suppose a relatively unchanged upwelling regime if we consider the period 1960-2005, but a rapid increase of intensity if we consider the period from 1985 onwards, particularly in the most southern regions, in agreement with the satellite imagery analysis. Our present results point out that mesoscale activity can account for larger changes in local SST than global average trends. In Eastern Boundary Upwelling Systems, where mesoscale structures play a major role in the description of the upwelling regime, to rely on sparse spatial observations to hypothesize about the decadal behaviour of the upwelling intensity at the basin scale may be questionable.

Natural ocean acidification at Papagayo upwelling system (north Pacific Costa Rica): implications for reef development

NASA Astrophysics Data System (ADS)

Sánchez-Noguera, Celeste; Stuhldreier, Ines; Cortés, Jorge; Jiménez, Carlos; Morales, Álvaro; Wild, Christian; Rixen, Tim

2018-04-01

Numerous experiments have shown that ocean acidification impedes coral calcification, but knowledge about in situ reef ecosystem response to ocean acidification is still scarce. Bahía Culebra, situated at the northern Pacific coast of Costa Rica, is a location naturally exposed to acidic conditions due to the Papagayo seasonal upwelling. We measured pH and pCO2 in situ during two non-upwelling seasons (June 2012, May-June 2013), with a high temporal resolution of every 15 and 30 min, respectively, using two Submersible Autonomous Moored Instruments (SAMI-pH, SAMI-CO2). These results were compared with published data from the 2009 upwelling season. Findings revealed that the carbonate system in Bahía Culebra shows a high temporal variability. Incoming offshore waters drive intra- and interseasonal changes. Lowest pH (7.8) and highest pCO2 (658.3 µatm) values measured during a cold-water intrusion event in the non-upwelling season were similar to those minimum values reported from upwelling season (pH = 7.8, pCO2 = 643.5 µatm), unveiling that natural acidification also occurs sporadically in the non-upwelling season. This affects the interaction of photosynthesis, respiration, calcification and carbonate dissolution and the resulting diel cycle of pH and pCO2 in the reefs of Bahía Culebra. During the non-upwelling season, the aragonite saturation state (Ωa) rises to values of > 3.3 and during the upwelling season falls below 2.5. The Ωa threshold values for coral growth were derived from the correlation between measured Ωa and coral linear extension rates which were obtained from the literature and suggest that future ocean acidification will threaten the continued growth of reefs in Bahía Culebra. These data contribute to building a better understanding of the carbonate system dynamics and coral reefs' key response (e.g., coral growth) to natural low-pH conditions, in upwelling areas in the eastern tropical Pacific and beyond.

Evaluation of Water Residence Time, Submarine Groundwater Discharge, and Maximum New Production Supported by Groundwater Borne Nutrients in a Coastal Upwelling Shelf System

NASA Astrophysics Data System (ADS)

Luo, Xin; Jiao, Jiu Jimmy; Liu, Yi; Zhang, Xiaolang; Liang, Wenzhao; Tang, Danling

2018-01-01

The biogeochemical processes in the continental shelf systems are usually extensively influenced by coastal upwelling and submarine groundwater discharge (SGD). Using eastern Hainan upwelling shelf system as an example, this study fully investigates SGD and coastal upwelling and their effects on the coastal nutrient loadings to the mixing layer of eastern Hainan shelf. Based on the spatial distributions of 223Ra and 228Ra, water residence time is estimated to be 16.9 ± 8.9 days. Based on the mass balance models of 226Ra and 228Ra, the total SGD of the eastern Hainan shelf is estimated to be 0.8 × 108 and 1.4 × 108 m3 d-1, respectively. The groundwater borne dissolved inorganic nitrogen (DIN) and dissolved inorganic phosphate (DIP) are estimated to be up to 1121.8 and 20.4 μM m2 d-1. The coastal upwelling delivers 2741.8 μM m2 d-1 DIN and 217.7 μM m2 d-1 DIP into the mixing layer, which are predominant in all the exogenous nutrient inputs. The groundwater borne DIN will support a maximum new production of 7.5 mM C m2 d-1, about up to 24.0% of the total new production in the study area. SGD-derived nutrient could be significant as a missing DIN to support the new production in the mixing layer of eastern Hainan shelf. The findings contribute to a better understanding of biogeochemical processes under the influences of SGD and coastal upwelling in the study area and other similar coastal upwelling systems.

Endobronchial ultrasound-guided lymph node biopsy with transbronchial needle forceps: a pilot study.

PubMed

Herth, F J F; Schuler, H; Gompelmann, D; Kahn, N; Gasparini, S; Ernst, A; Schuhmann, M; Eberhardt, R

2012-02-01

One limitation of endobronchial ultrasound-guided transbronchial needle aspiration (EBUS-TBNA) is the size of the available needles, frequently yielding only cells for cytological examination. The aim of this pilot study was to evaluate the efficacy and safety of newly developed needle forceps to obtain tissue for the histological diagnosis of enlarged mediastinal lymph nodes. Patients with enlarged, positron emission tomography (PET)-positive lymph nodes were included. The transbronchial needle forceps (TBNF), a sampling instrument combining the characteristics of a needle (bevelled tip for penetrating through the bronchial wall) with forceps (two serrated jaws for grasping tissue) was used through the working channel of the EBUS-TBNA scope. Efficacy and safety was assessed. 50 patients (36 males and 14 females; mean age 51 yrs) with enlarged or PET-positive lymph nodes were included in this pilot study. In 48 (96%) patients penetration of the bronchial wall was possible and in 45 patients tissue for histological diagnosis was obtained. In three patients TBNF provided inadequate material. For patients in whom the material was adequate for a histological examination, a specific diagnosis was established in 43 (86%) out of 50 patients (nonsmall cell lung cancer: n=24; small cell lung cancer: n=7; sarcoidosis: n=4; Hodgkin's lymphoma: n=4; tuberculosis: n=2; and non-Hodgkin's lymphoma: n=2).No clinically significant procedure-related complications were encountered. This study demonstrated that EBUS-TBNF is a safe procedure and provides diagnostic histological specimens of mediastinal lymph nodes.

Comparison of diagnostic performances among bronchoscopic sampling techniques in the diagnosis of peripheral pulmonary lesions.

PubMed

Boonsarngsuk, Viboon; Kanoksil, Wasana; Laungdamerongchai, Sarangrat

2015-04-01

There are many sampling techniques dedicated to radial endobronchial ultrasound (R-EBUS) guided flexible bronchoscopy (FB). However, data regarding the diagnostic performances among bronchoscopic sampling techniques is limited. This study was conducted to compare the diagnostic yields among bronchoscopic sampling techniques in the diagnosis of peripheral pulmonary lesions (PPLs). A prospective study was conducted on 112 patients who were diagnosed with PPLs and underwent R-EBUS-guided FB between Oct 2012 and Sep 2014. Sampling techniques-including transbronchial biopsy (TBB), brushing cell block, brushing smear, rinsed fluid of brushing, and bronchoalveolar lavage (BAL)-were evaluated for the diagnosis. The mean diameter of the PPLs was 23.5±9.5 mm. The final diagnoses included 76 malignancies and 36 benign lesions. The overall diagnostic yield of R-EBUS-guided bronchoscopy was 80.4%; TBB gave the highest yield among the 112 specimens: 70.5%, 34.8%, 62.5%, 50.0% and 42.0% for TBB, brushing cell block, brushing smear, rinsed brushing fluid, and BAL fluid (BALF), respectively (P<0.001). TBB provided high diagnostic yield irrespective of the size and etiology of the PPLs. The combination of TBB and brushing smear achieved the maximum diagnostic yield. Of 31 infectious PPLs, BALF culture gave additional microbiological information in 20 cases. TBB provided the highest diagnostic yield; however, to achieve the highest diagnostic performance, TBB, brushing smear and BAL techniques should be performed together.

Spatiotemporal variation of vertical particle fluxes and modelled chlorophyll a standing stocks in the Benguela Upwelling System

NASA Astrophysics Data System (ADS)

Vorrath, Maria-Elena; Lahajnar, Niko; Fischer, Gerhard; Libuku, Viktor Miti; Schmidt, Martin; Emeis, Kay-Christian

2018-04-01

Marine particle fluxes from high productive coastal upwelling systems return upwelled CO2 and nutrients to the deep ocean and sediments and have a substantial impact on the global carbon cycle. This study examines relations between production regimes on the shelf and over the continental margin of the Benguela Upwelling System (BUS) in the SE Atlantic Ocean. Data of composition and timing of vertical particle flux come from sediment trap time series (deployed intermittently between 1988 and 2014) in the regions Walvis Ridge, Walvis Bay, Luederitz and Orange River. We compare their seasonal variability to modelled patterns of chlorophyll concentrations in a 3-D ecosystem model. Both modelled seasonal chlorophyll a standing stocks and sampled particle flux patterns are highly correspondent with a bimodal seasonal cycle offshore the BUS. The material in the particle flux in offshore traps is dominantly carbonate (40-70%), and flux peaks in offshore particle flux originate from two independent events: in austral autumn thermocline shoaling and vertical mixing are decoupled from coastal upwelling, while fluxes in spring coincide with the upwelling season, indicated by slightly elevated biogenic opal values at some locations. Coastal particle fluxes are characterized by a trimodal pattern and are dominated by biogenic opal (22-35%) and organic matter (30-60%). The distinct seasonality in observed fluxes on the shelf is caused by high variability in production, sinking behaviour, wind stress, and hydrodynamic processes. We speculate that global warming will increase ocean stratification and alter coastal upwelling, so that consequences for primary production and particle flux in the BUS are inevitable.

N2O production by nitrifier denitrification in the Benguela Upwelling System

NASA Astrophysics Data System (ADS)

Frame, C. H.; Hou, L.; Lehmann, M. F.

2014-12-01

The Benguela upwelling system off the coast of southwestern Africa is an important zone of marine N2O production whose upwelling rates vary seasonally. Here we present N2O stable isotopic and isotopomeric data collected during a period of high upwelling (September 2013) and low upwelling (January 2014). During both periods, 15N-nitrite and 15N-ammonium tracer inucbation experiments were used to investigate N2O production by ammonia oxidizing microorganisms in the top 150m of the water column. N2O production from 15N-ammonium was not measurable during these incubations. However, we detected N2O production from 15N-nitrite, suggesting that nitrifier denitrification is a source of shallow N2O in this region. Furthermore, decreasing the pH of the incubation water enhanced the amount of N2O produced, suggesting that upwelling of CO2-rich/low-pH deep water may enhance N2O production in this region. Finally, we present our incubation data in the larger context of the N2O and nitrite isotopic and concentration profiles, with an eye toward comparing incubation-based N2O production rates with profile-based estimates.

Temporal and spatial variability of dissolved organic and inorganic phosphorus, and metrics of phosphorus bioavailability in an upwelling-dominated coastal system

NASA Astrophysics Data System (ADS)

Ruttenberg, Kathleen C.; Dyhrman, Sonya T.

2005-10-01

High-frequency temporal and spatial shifts in the various dissolved P pools (total, inorganic, and organic) are linked to upwelling/relaxation events and to phytoplankton bloom dynamics in the upwelling-dominated Oregon coastal system. The presence and regulation of alkaline phosphatase activity (APA) is apparent in the bulk phytoplankton population and in studies of cell-specific APA using Enzyme Labeled Fluorescence (ELF®). Spatial and temporal variability are also evident in phytoplankton community composition and in APA. The spatial pattern of dissolved phosphorus and APA variability can be explained by bottom-controlled patterns of upwelling, and flushing times of different regions within the study area. The presence of APA in eukaryotic taxa indicates that dissolved organic phosphorus (DOP) may contribute to phytoplankton P nutrition in this system, highlighting the need for a more complete understanding of P cycling and bioavailability in the coastal ocean.

Potential and timescales for oxygen depletion in coastal upwelling systems: A box-model analysis

NASA Astrophysics Data System (ADS)

Harrison, C. S.; Hales, B.; Siedlecki, S.; Samelson, R. M.

2016-05-01

A simple box model is used to examine oxygen depletion in an idealized ocean-margin upwelling system. Near-bottom oxygen depletion is controlled by a competition between flushing with oxygenated offshore source waters and respiration of particulate organic matter produced near the surface and retained near the bottom. Upwelling-supplied nutrients are consumed in the surface box, and some surface particles sink to the bottom where they respire, consuming oxygen. Steady states characterize the potential for hypoxic near-bottom oxygen depletion; this potential is greatest for faster sinking rates, and largely independent of production timescales except in that faster production allows faster sinking. Timescales for oxygen depletion depend on upwelling and productivity differently, however, as oxygen depletion can only be reached in meaningfully short times when productivity is rapid. Hypoxia thus requires fast production, to capture upwelled nutrients, and fast sinking, to deliver the respiration potential to model bottom waters. Combining timescales allows generalizations about tendencies toward hypoxia. If timescales of sinking are comparable to or smaller than the sum of those for respiration and flushing, the steady state will generally be hypoxic, and results indicate optimal timescales and conditions exist to generate hypoxia. For example, the timescale for approach to hypoxia lengthens with stronger upwelling, since surface particle and nutrient are shunted off-shelf, in turn reducing subsurface respiration and oxygen depletion. This suggests that if upwelling winds intensify with climate change the increased forcing could offer mitigation of coastal hypoxia, even as the oxygen levels in upwelled source waters decline.

Oxygen cycling in the northern Benguela Upwelling System: Modelling oxygen sources and sinks

NASA Astrophysics Data System (ADS)

Schmidt, Martin; Eggert, Anja

2016-12-01

This paper elucidates the oxygen dynamics in the northern Benguela Upwelling System by means of process oriented, numerical modelling. Owing to the complex physical-biological interaction in this system, a coupled hydrodynamic-biogeochemical model is required to grasp the various aspects of the oxygen dynamics. We used high-resolution atmospheric fields derived from observations to force our model, available since 1999. The model results represent a 15 years, consistent data set of realistic hydrographic and ecosystem variables, including oxygen distribution patterns. After a concise description of the main aspects of the model, we use the model data to analyse the components contributing to the oxygen dynamics, namely, the ocean circulation, the exchange between ocean and atmosphere as well as the local biogeochemical oxygen cycling in the system. We thoroughly validate the model with available field observations and remote sensing data. The strengths of coastal upwelling, which controls the nutrient supply to the euphotic zone, as well as the poleward undercurrent that carries oxygen and nutrients to the shelf in the northern Benguela Upwelling System are well reproduced in the model. Among the biological oxygen sinks, mineralisation in the sediment, respiration of zooplankton and nitrification in the water column are important. We also found that vertical migration of zooplankton in response to the oxygen conditions provides a regulating feedback, which may prevent a complete deoxygenation of suboxic waters. As long as oxygen or nitrate are available in the bottom waters, the activities of chemolithoautotrophic sulphur bacteria on the sediment surface keep the redoxcline within the sediment and prevent the release of hydrogen sulphide into the water column. By horizontal integration of the simulated ocean-atmosphere oxygen flux, it can be shown that the Kunene upwelling cell between 16 ° S and 18 ° S is a boundary between the equatorial ocean, characterise by weak oxygen release to the atmosphere, and the subtropical Benguela Upwelling System governed by an enhanced and seasonal varying flux. Furthermore, a comparison of oxygen fluxes controlled by physical transport versus biogeochemical processes shows that the physical processes dominate in the northern Benguela Upwelling System.

Upwelling regime off the Cabo Frio region in Brazil and impact on acoustic propagation.

PubMed

Calado, Leandro; Camargo Rodríguez, Orlando; Codato, Gabriel; Contrera Xavier, Fabio

2018-03-01

This work introduces a description of the complex upwelling regime off the Cabo Frio region in Brazil and shows that ocean modeling, based on the feature-oriented regional modeling system (FORMS) technique, can produce reliable predictions of sound speed fields for the corresponding shallow water environment. This work also shows, through the development of simulations, that the upwelling regime can be responsible for the creation of shadow coastal zones, in which the detection probability is too low for an acoustic source to be detected. The development of the FORMS technique and its validation with real data, for the particular region of coastal upwelling off Cabo Frio, reveals the possibility of a sustainable and reliable forecast system for the corresponding (variable in space and time) underwater acoustic environment.

Seasonality of coastal upwelling trends under future warming scenarios along the southern limit of the canary upwelling system

NASA Astrophysics Data System (ADS)

Sousa, Magda Catarina; Alvarez, Ines; deCastro, Maite; Gomez-Gesteira, Moncho; Dias, João Miguel

2017-04-01

The Canary Upwelling Ecosystem (CUE) is one of the four most important upwelling sites around the world in terms of primary production, with coastal upwelling mostly a year-round phenomenon south of 30°N. Based on annual future projections, several previous studies indicated that global warming will intensify coastal upwelling in the northern region and will induce its weakening at the southernmost latitudes. However, analysis of historical data, showed that coastal upwelling depends on the length of the time series, the season, and even the database used. Thus, despite previous efforts, an overall detailed description of seasonal upwelling trends and their effects on sea surface temperature (SST) along the Canary coast over the 21st century remains unclear. To address this issue, several regional and global wind and SST climate models from CORDEX and CMIP5 projects for the period 1976-2099 were analyzed. This research provides new insights about coastal upwelling trends under future warming scenarios for the CUE, with results showing opposite patterns for upwelling index (UI) trends depending on the season. A weakening of the UI occurs from May to August all along the coast, whereas it increases from October to April. Analysis of SST trends reveals a general warming throughout the area, although the warming rate is considerably lower near the shore than at open ocean locations due to coastal upwelling effects. In addition, SST projections show higher warming rates from May to August than from October to April in response to the future decreasing trend in the UI during the summer months.

Life in the sea of plenty: Seasonal and regional comparison of physiological performance of Euphausia hanseni in the northern Benguela upwelling system

NASA Astrophysics Data System (ADS)

Werner, Thorsten; Buchholz, Cornelia; Buchholz, Friedrich

2015-09-01

Variability in upwelling events may lead to periods of constrained food availability in the northern Benguela upwelling system (NBUS), thereby affecting the physiological state and metabolic activity of euphausiids. Most attention has so far been paid to seasonal effects but little is known about regional variability. Metabolic activity (expressed by respiration and excretion rates) and physiological state (expressed by reproductive effort and moult activity) in Euphausia hanseni were examined at different stations during austral summer (minimum upwelling) and austral winter (maximum upwelling). Overall, regional differences in physiological state, influencing metabolic activity, were greater than seasonal ones, indicating favourable conditions for growth and reproduction year-round. Higher respiration rates were found for females in more advanced stages of sexual development. Moult stage did not affect oxygen consumption rates, however. The physiological state of E. hanseni at the time of capture may serve as a meaningful indicator of the associated hydrographic conditions in the NBUS, to be further used in eco-system analysis on seasonal or long-term time scales. A latitudinal comparison of species highlights the extraordinary physiological plasticity of euphausiids.

The NAO Influence on the Early to Mid-Holocene North Atlantic Coastal Upwelling

NASA Astrophysics Data System (ADS)

Hernandez, A.; Cachão, M.; Sousa, P.; Trigo, R. M.; Freitas, M. C.

2017-12-01

Coastal upwelling regions yield some of the oceanic most productive ecosystems, being crucial for the worldwide social and economic development. Most upwelling systems, emerging cold nutrient-rich deep waters, are located in the eastern boundaries of the Atlantic and Pacific basins, and are driven by meridional wind fields parallel to the coastal shore. These winds are associated with the subsiding branch of the large-scale Anticyclonic high pressure systems that dominate the subtropical ocean basins, and therefore can be displaced or intensified within the context of past and future climate changes. However, the role of the current global warming influencing the coastal upwelling is, as yet, unclear. Therefore it is essential to derive a long-term perspective, beyond the era of instrumental measurements, to detect similar warm periods in the past that have triggered changes in the upwelling patterns. In this work, the upwelling dynamics in the Iberian North Atlantic margin during the early and mid-Holocene is reconstructed, using calcareous nannofossils from a decadally resolved estuarine sediment core located in southwestern Portugal. Results suggest that the coastal dynamics reflects changes in winds direction likely related to shifts in the NAO-like conditions. Furthermore, the reconstructed centennial-scale variations in the upwelling are synchronous with changes in solar irradiance, a major external forcing factor of the climate system that is known to exert influence in atmospheric circulation patterns. In addition, these proxy-based data interpretations are in agreement with wind field and solar irradiance simulation modelling for the mid-Holocene. Therefore, the conclusion that the solar activity via the NAO modulation controlled the North Atlantic upwelling of western Iberia during the early and mid-Holocene at decadal to centennial timescales can be derived. The financial support for attending this meeting was possible through FCT project UID/GEO/50019/2013 - Instituto Dom Luiz

Modeling coastal upwelling around a small-scale coastline promontory

NASA Astrophysics Data System (ADS)

Haas, K. A.; Cai, D.; Freismuth, T. M.; MacMahan, J.; Di Lorenzo, E.; Suanda, S. H.; Kumar, N.; Miller, A. J.; Edwards, C. A.

2016-12-01

On the US west coast, northerly winds drive coastal ocean upwelling, an important process which brings cold nutrient rich water to the nearshore. The coastline geometry has been shown to be a significant factor in the strength of the upwelling process. In particular, the upwelling in the lee of major headlands have been shown to be enhanced. Recent observations from the Pt. Sal region on the coast of southern California have shown the presence of cooler water south of a small (350 m) rocky promontory (Mussel Pt.) during upwelling events. The hypothesis is that the small scale promontory is creating a lee side enhancement to the upwelling. To shed some light on this process, numerical simulations of the inner shelf region centered about Pt. Sal are conducted with the ROMS module of the COAWST model system. The model system is configured with four nested grids with resolutions ranging from approximately 600 m to the outer shelf ( 200 m) to the inner shelf ( 66 m) and finally to the surf zone ( 22 m). A solution from a 1 km grid encompassing our domain provides the boundary conditions for the 600 m grid. Barotropic tidal forcing is incorporated at the 600 m grid to provide tidal variability. This model system with realistic topography and bathymetry, winds and tides, is able to isolate the forcing mechanisms that explain the emergence of the cold water mass. The simulations focus on the time period of June - July, 2015 corresponding to the pilot study in which observational experiment data was collected. The experiment data in part consists of in situ measurement, which includes mooring with conductivity, temperature, depth, and flow velocity. The model simulations are able to reproduce the important flow features including the cooler water mass south of Mussel Pt. As hypothesized, the strength of the upwelling is enhanced on the side of Mussel Pt. In addition, periods of wind relaxation where the upwelling ceases and even begins to transform towards downwelling is analyzed.

High Resolution Upwelling Cycles in Guaymas and Cariaco Basins over the late Holocene: Coupling Between the Western Atlantic and Eastern Pacific?

NASA Astrophysics Data System (ADS)

Goni, M. A.

2005-12-01

The recent past history of sea surface temperature (SST) conditions in two wind-dominated upwelling systems, Guaymas Basin (Gulf of California) and Cariaco Basin (Venezuela) was investigated using the alkenone-based UK'37 index. Both of these systems undergo marked seasonal SST changes of 4-10 degrees C, which are associated with wind-driven upwelling and thermal stratification cycles. Both Guaymas and Cariaco Basins are also characterized by suboxic to anoxic bottom waters that result in undisturbed, varved sediments. Confirmation that the seasonal SST trends are accurately incorporated into the UK'37 ratios of sinking particles was achieved using sediment trap samples. Analyses of sediment cores from Guaymas and Cariaco Basins yielded high-resolution (decadal) records of SST conditions in the overlying water column from 1700 to 2000 AD. The trends in the UK'37 index revealed general increases in the SST at both sites over that last 300 years associated with the end of the little ice age. However, in addition to this long-term trend, higher-frequency (~ 50 years) changes in SST that ranged from 1-3 degrees C were observed. We speculate that these decadal trends in SST reflect variations in the intensity of wind-driven upwelling at these sites. Most interestingly, there is a marked contrast in the timing of the SST values between Guaymas and Cariaco so that periods of enhanced upwelling in Guyamas Basin are characterized by decreased upwelling in Cariaco Basin (and vice versa). We propose that these contrasting records reflect differences in the response of wind-driven upwelling to changes in the position of the Intertropical Convergence Zone over the western Atlantic and the subtropical High over the eastern Pacific. The connection between these two upwelling systems and its significance for paleoreconstruction studies will be explored further.

Role of Xpert MTB/RIF in differentiating tuberculosis from sarcoidosis in patients with mediastinal lymphadenopathy undergoing EBUS-TBNA: a study of 147 patients.

PubMed

Dhooria, Sahajal; Gupta, Nalini; Bal, Amanjit; Sehgal, Inderpaul Singh; Aggarwal, Ashutosh Nath; Sethi, Sunil; Behera, Digambar; Agarwal, Ritesh

2016-10-07

In patients with intrathoracic lymphadenopathy, differentiating tuberculosis from sarcoidosis is often difficult. We hypothesized that Xpert MTB/RIF assay, a semi-automated hemi-nested PCR would help in this regard. To evaluate the performance of Xpert MTB/RIF in the differential diagnosis of tuberculosis and sarcoidosis. This was a retrospective analysis of patients with intrathoracic lymphadenopathy who underwent endobronchial ultrasound (EBUS)-guided transbronchial needle aspiration (TBNA), and were diagnosed as either tuberculosis or sarcoidosis. The results of Xpert MTB/RIF assay, tuberculin skin test and endosonographic characteristics (heterogeneous echotexture and coagulation necrosis sign) of the lymph nodes were compared between the two groups. During the study period, 465 EBUS procedures were performed and a diagnosis of sarcoidosis (n=94) or tuberculosis (n=53) was made in 147 patients. Xpert MTB/RIF was positive in 26 (49.1%) and two (2.1%) patients with tuberculosis and sarcoidosis, respectively. The sensitivity, specificity, positive and negative predictive values of Xpert MTB/RIF in the diagnosis of tuberculosis were 49.1 %, 97.9%, 92.9% and 77.3%, respectively. The presence of any of the four features namely positive Xpert MTB/RIF, positive tuberculin skin test, heterogeneous echotexture of the lymph nodes, or the presence of endosonographic coagulation necrosis sign yielded a sensitivity and negative predictive value of 83.0% and 88.0%, respectively in the diagnosis of tuberculosis versus sarcoidosis. Xpert MTB/RIF has good specificity and positive predictive value in the diagnosis of tuberculosis, and is a useful investigation in separating tuberculosis from sarcoidosis.

Endobronchial Ultrasound-guided Transbronchial Needle Aspiration With a 19-G Needle Device.

PubMed

Tremblay, Alain; McFadden, Seamus; Bonifazi, Martina; Luzzi, Valentina; Kemp, Samuel V; Gasparini, Stefano; Chee, Alex; MacEachern, Paul; Dumoulin, Elaine; A Hergott, Christopher; Shah, Pallav L

2018-05-16

Endobronchial ultrasound (EBUS)-guided transbronchial needle aspiration is a well-established first-line minimally invasive modality for mediastinal lymph node sampling. Although results are excellent overall, the technique underperforms in certain situations. We aimed to describe our results using a new 19-G EBUS-guided transbronchial needle aspiration device to determine safety and feasibility of this approach. We completed a retrospective chart review of all cases performed to the time of data analysis at each of 3 study sites. A total of 165 procedures were performed with a total of 297 individual lymph nodes or lesions sampled with the 19-G device by 10 bronchoscopists. Relatively large targets were selected for sampling with the device (mean lymph node size: 20.4 mm; lung lesions: 33.5 mm). A specific diagnosis was obtained in 77.3% of cases with an additional 13.6% of cases with benign lymphocytes, for a procedural adequacy rate of 90.9%. Procedure sample adequacy was 88.6% in suspected malignant cases, 91.0% in suspected sarcoidosis/lymphadenopathy cases, and 85.7% of cases with suspected lymphoma. On a per-node basis, a specific diagnosis was noted in 191/280 (68.2%) of samples, with an additional 61 showing benign lymphocytes for a per-node sample adequacy rate of 90%. One case (0.6%) of intraprocedure bleeding was noted. A new flexible 19-G EBUS needle was successfully and safely applied in a large patient cohort for sampling of lung and enlarged mediastinal lesions with high diagnostic rates across clinical indications.

Coastal Upwelling Drives Intertidal Assemblage Structure and Trophic Ecology.

PubMed

Reddin, Carl J; Docmac, Felipe; O'Connor, Nessa E; Bothwell, John H; Harrod, Chris

2015-01-01

Similar environmental driving forces can produce similarity among geographically distant ecosystems. Coastal oceanic upwelling, for example, has been associated with elevated biomass and abundance patterns of certain functional groups, e.g., corticated macroalgae. In the upwelling system of Northern Chile, we examined measures of intertidal macrobenthic composition, structure and trophic ecology across eighteen shores varying in their proximity to two coastal upwelling centres, in a hierarchical sampling design (spatial scales of >1 and >10 km). The influence of coastal upwelling on intertidal communities was confirmed by the stable isotope values (δ13C and δ15N) of consumers, including a dominant suspension feeder, grazers, and their putative resources of POM, epilithic biofilm, and macroalgae. We highlight the utility of muscle δ15N from the suspension feeding mussel, Perumytilus purpuratus, as a proxy for upwelling, supported by satellite data and previous studies. Where possible, we used corrections for broader-scale trends, spatial autocorrelation, ontogenetic dietary shifts and spatial baseline isotopic variation prior to analysis. Our results showed macroalgal assemblage composition, and benthic consumer assemblage structure, varied significantly with the intertidal influence of coastal upwelling, especially contrasting bays and coastal headlands. Coastal topography also separated differences in consumer resource use. This suggested that coastal upwelling, itself driven by coastline topography, influences intertidal communities by advecting nearshore phytoplankton populations offshore and cooling coastal water temperatures. We recommend the isotopic values of benthic organisms, specifically long-lived suspension feeders, as in situ alternatives to offshore measurements of upwelling influence.

Coastal Upwelling Drives Intertidal Assemblage Structure and Trophic Ecology

PubMed Central

Reddin, Carl J.; Docmac, Felipe; O’Connor, Nessa E.; Bothwell, John H.; Harrod, Chris

2015-01-01

Similar environmental driving forces can produce similarity among geographically distant ecosystems. Coastal oceanic upwelling, for example, has been associated with elevated biomass and abundance patterns of certain functional groups, e.g., corticated macroalgae. In the upwelling system of Northern Chile, we examined measures of intertidal macrobenthic composition, structure and trophic ecology across eighteen shores varying in their proximity to two coastal upwelling centres, in a hierarchical sampling design (spatial scales of >1 and >10 km). The influence of coastal upwelling on intertidal communities was confirmed by the stable isotope values (δ13C and δ15N) of consumers, including a dominant suspension feeder, grazers, and their putative resources of POM, epilithic biofilm, and macroalgae. We highlight the utility of muscle δ15N from the suspension feeding mussel, Perumytilus purpuratus, as a proxy for upwelling, supported by satellite data and previous studies. Where possible, we used corrections for broader-scale trends, spatial autocorrelation, ontogenetic dietary shifts and spatial baseline isotopic variation prior to analysis. Our results showed macroalgal assemblage composition, and benthic consumer assemblage structure, varied significantly with the intertidal influence of coastal upwelling, especially contrasting bays and coastal headlands. Coastal topography also separated differences in consumer resource use. This suggested that coastal upwelling, itself driven by coastline topography, influences intertidal communities by advecting nearshore phytoplankton populations offshore and cooling coastal water temperatures. We recommend the isotopic values of benthic organisms, specifically long-lived suspension feeders, as in situ alternatives to offshore measurements of upwelling influence. PMID:26214806

On the presence of coastal upwelling along the northeastern Tyrrhenian coast

NASA Astrophysics Data System (ADS)

Martellucci, Riccardo; Melchiorri, Cristiano; Costanzo, Lorenzo; Marcelli, Marco

2017-04-01

The Mediterranean region shows a high climate variability due to the interactions between mid-latitude and tropical processes. This variability makes the Mediterranean a potentially vulnerable region to climatic changes. The present research aims to investigate the hydrographical response to Northerly wind in the northeastern Tyrrhenian coast, to identify the relations between upwelling events and teleconnection patterns. In the Tyrrhenian basin northerly winds flow between North-East and North-West and could be considered upwelling favorable winds. This atmospheric circulation can causes a divergent flow near the coast that generates a subsurface water flows inshore toward the coast up to the surface layer that is upwelling. This phenomenon strongly influence the marine ecosystems, contributing to the supply of nutrients and affecting the primary producers. In this context multi-platform observing system is an important tool to follow the evolution of these phenomena. Sea temperature and wind field acquired by the C-CEMS Observing system were used to identify upwelling phenomena between 2012 and 2016, in the coastal area of Civitavecchia, Northern Tyrrhenian sea, Italy. Moreover a thirty years' wind-driven upwelling conditions have been studied in the area. ERA-Interim (ECMWF) wind data for the period 1982-2012 have been used to compute the distribution of upwelling favorable wind events. These have been compared to "Copernicus Marine Environment Monitoring Service" Sea Surface Temperature (SST) to compute upwelling events. Upwelling favorable wind has been defined in the sector between Northwest and Northeast (Wd >330°N & Wd < 30°N). Wind speed has been divided into three classes: between 4 m/s and 6 m/s, between 6 m/s and 8 m/s and greater than 8 m/s. Sea Surface Temperature have been analyzed to define SST field for wind-driven coastal upwelling assessment. SST minima along the coast was used to identify upwelling from satellite imagery. The two datasets were compared and only the days that presented those characteristics were chosen. ERA-Interim (ECMWF) sea level pressure data over the Europe for the period 1982 -2012 have been used to compute the most relevant teleconnection patterns through Empirical Orthogonal Function's analysis. An increase of upwelling events in the Tyrrhenian coast is observed in the last thirty years; the occurrence of upwelling events has a seasonal oscillation, with a maximum frequency during winter and spring seasons. In the last decade an increase of these events in winter and a decrease in spring is observed; also a recurrence of these events in summer season has been identified, without the specific contribution of one of atmospheric regimes. Data analyzed shows a decrement in Atlantic Ridge (AR) regime and an increment in West Blocking (WBL) regime, especially for the event characterized by wind speeds greater than 8m/s.

Nutrient controls on new production in the Bodega Bay, California, coastal upwelling plume

NASA Astrophysics Data System (ADS)

Dugdale, R. C.; Wilkerson, F. P.; Hogue, V. E.; Marchi, A.

2006-12-01

A theoretical framework for the time-dependent processes leading to the high rates of new production in eastern boundary upwelling systems has been assembled from a series of past upwelling studies. As part of the CoOP WEST (Wind Events and Shelf Transport) study, new production in the Bodega Bay upwelling area and it's control by ambient nitrate and ammonium concentrations and the advective wind regime are described. Data and analyses are focused primarily on the WEST 2001 cruise (May-June 2001) when the two legs differed greatly in wind regimes but not nutrient concentrations. Elevated concentrations of ammonium in upwelled water with high nitrate were observed in both legs. Nitrate uptake by phytoplankton as a function of nitrate concentration was linear rather than Michaelis-Menten-like, modulated by inhibitory levels of ammonium, yielding coefficients that enable the specific nitrate uptake element of new production to be estimated from nutrient concentrations. The range of specific nitrate uptake rates for the two legs of WEST 2001 were similar, essentially a physiological response to nutrient conditions. However, the low "realization" of new production i.e. incorporation of biomass as particulate nitrogen that occurred in this system compared to the theoretical maximum possible was determined by the strong advective and turbulent conditions that dominated the second leg of the WEST 2001 study. These data are compared with other upwelling areas using a physiological shift-up model [Dugdale, R.C., Wilkerson, F.P., Morel, A. 1990. Realization of new production in coastal upwelling areas: a means to compare relative performance. Limnology and Oceanography 35, 822-829].

75 FR 40851 - Notice Pursuant to the National Cooperative Research and Production Act of 1993; Advanced Media...

Federal Register 2010, 2011, 2012, 2013, 2014

2010-07-14

...), Las Vegas, NV, have been added as parties to this venture. Also, eBus Limited, Auckland, NEW ZEALAND; Lifetime, New York, NY; RPPtv, Midhurst, K. Sussex, UNITED KINGDOM; and Matt Beard (individual member...

Relationship between endobronchial ultrasound‐guided (EBUS)‐transbronchial needle aspiration utility and computed tomography staging, node size at EBUS, and positron emission tomography scan node standard uptake values: A retrospective analysis

PubMed Central

Marchand, Clare

2017-01-01

Background Endobronchial ultrasound‐guided transbronchial needle aspiration (EBUS‐TBNA) diagnoses and stages mediastinal lymph node pathology. This retrospective study determined the relationship between EBUS‐TBNA utility and non‐small cell lung cancer (NSCLC) stage, lymph node size, and positron emission tomography (PET) standard uptake values (SUV), and the utility of neck ultrasound in bulky mediastinal disease. Methods Data of 284 consecutive patients who had undergone EBUS‐TBNA was collected. Two hundred patients had suspected NSCLC, with 148 confirmed NSCLC cases. The diagnostic utility of EBUS‐TBNA was determined according to NSCLC stage, EBUS lymph node size, PET SUV, use in distal metastases, and mutation testing. The utility of neck ultrasound for N3 disease was calculated in patients with bulky mediastinal disease. Results EBUS‐TBNA was well tolerated with 97% sensitivity in distant metastatic disease, avoiding the need for distal metastases biopsy in 81% of cases. It had equivalent diagnostic accuracy in all NSCLC stages and in lymph nodes <10 mm, <20 mm or >20 mm (sensitivity >92% in all cases), with no mutation testing failures. EBUS‐TBNA had 33% sensitivity in PET indolent (SUV < 4) nodes and 79% sensitivity in PET active nodes (SUV > 4). EBUS‐TBNA diagnosed 12 cases of lymphoma without flow cytometry. Conclusions The use of EBUS‐TBNA meant that distant metastatic biopsy was avoided in 81% of cases, performing well irrespective of cancer stage, node size, and facilitating mutation testing. Neck ultrasound failed to detect N3 disease in patients with bulky mediastinal disease. EBUS‐TBNA had a sensitivity of 33% for metastases in PET negative nodes, highlighting PET limitations. PMID:28436173

Bronchoscopy with endobronchial ultrasound guided transbronchial needle aspiration vs. transthoracic needle aspiration in lung cancer diagnosis and staging.

PubMed

Munoz, Mark L; Lechtzin, Noah; Li, Qing Kay; Wang, KoPen; Yarmus, Lonny B; Lee, Hans J; Feller-Kopman, David J

2017-07-01

In evaluating patients with suspected lung cancer, it is important to not only obtain a tissue diagnosis, but also to obtain enough tissue for both histologic and molecular analysis in order to appropriately stage the patient with a safe and efficient strategy. The diagnostic approach may often be dependent on local resources and practice patterns rather than current guidelines. We Describe lung cancer staging at two large academic medical centers to identify the impact different procedural approaches have on patient outcomes. We conducted a retrospective cohort study of all patients undergoing a lung cancer diagnostic evaluation at two multidisciplinary centers during a 1-year period. Identifying complication rates and the need for multiple biopsies as our primary outcomes, we developed a multivariate regression model to determine features associated with complications and need for multiple biopsies. Of 830 patients, 285 patients were diagnosed with lung cancers during the study period. Those staged at the institution without an endobronchial ultrasound (EBUS) program were more likely to require multiple biopsies (OR 3.62, 95% CI: 1.71-7.67, P=0.001) and suffer complications associated with the diagnostic procedure (OR 10.2, 95% CI: 3.08-33.58, P<0.001). Initial staging with transthoracic needle aspiration (TTNA) and conventional bronchoscopy were associated with greater need for subsequent biopsies (OR 8.05 and 14.00, 95% CI: 3.43-18.87 and 5.17-37.86, respectively) and higher complication rates (OR 37.75 and 7.20, 95% CI: 10.33-137.96 and 1.36-37.98, respectively). Lung cancer evaluation at centers with a dedicated EBUS program results in fewer biopsies and complications than at multidisciplinary counterparts without an EBUS program.

The use of circulation weather types to predict upwelling activity along the Western Iberian Peninsula coast

NASA Astrophysics Data System (ADS)

Ramos, Alexandre M.; Cordeiro Pires, Ana; Sousa, Pedro M.; Trigo, Ricardo M.

2013-04-01

Coastal upwelling is a phenomenon that occurs in most western oceanic coasts due to the presence of mid-latitude high-pressure systems that generate equatorward winds along the coast and consequent offshore displacement of surface waters that in turn cause deeper, colder, nutrient-rich waters to arise. In western Iberian Peninsula (IP) the high-pressure system associated to northerly winds occurs mainly during spring and summer. Upwelling systems are economically relevant, being the most productive regions of the world ocean and crucial for fisheries. In this work, we evaluate the intra- and inter-annual variability of the Upwelling Index (UI) off the western coast of the IP considering four locations at various latitudes: Rias Baixas, Aveiro, Figueira da Foz and Cabo da Roca. In addition, the relationship between the variability of the occurrence of several circulation weather types (Ramos et al., 2011) and the UI variability along this coast was assessed in detail, allowing to discriminate which types are frequently associated with strong and weak upwelling activity. It is shown that upwelling activity is mostly driven by wind flow from the northern quadrant, for which the obtained correlation coefficients (for the N and NE types) are higher than 0.5 for the four considered test locations. Taking into account these significant relationships, we then developed statistical multi-linear regression models to hindcast upwelling series (April to September) at the four referred locations, using monthly frequencies of circulation weather types as predictors. Modelled monthly series reproduce quite accurately observational data, with correlation coefficients above 0.7 for all locations, and relatively small absolute errors. Ramos AM, Ramos R, Sousa P, Trigo RM, Janeira M, Prior V (2011) Cloud to ground lightning activity over Portugal and its association with Circulation Weather Types. Atmospheric Research 101:84-101. doi: 10.1016/j.atmosres.2011.01

Bacterial and Archaeal Communities Variability Associated with Upwelling and Anthropogenic Pressures in the Protection Area of Arraial do Cabo (Cabo Frio region - RJ).

PubMed

Coelho-Souza, Sergio A; Araújo, Fábio V; Cury, Juliano C; Jesus, Hugo E; Pereira, Gilberto C; Guimarães, Jean R D; Peixoto, Raquel S; Dávila, Alberto M R; Rosado, Alexandre S

2015-09-01

Upwelling systems contain a high diversity of pelagic microorganisms and their composition and activity are defined by factors like temperature and nutrient concentration. Denaturing gradient gel electrophoresis (DGGE) technique was used to verify the spatial and temporal genetic variability of Bacteria and Archaea in two stations of the Arraial do Cabo coastal region, one under upwelling pressure and another under anthropogenic pressure. In addition, biotic and abiotic variables were measured in surface and deep waters from three other stations between these stations. Six samplings were done during a year and adequately represented the degrees of upwelling and anthropogenic pressures to the system. Principal Component Analysis (PCA) showed negative correlations between the concentrations of ammonia and phosphorous with prokaryotic secondary production and the total heterotrophic bacteria. PCA also showed negative correlation between temperature and the abundance of prokaryotic cells. Bacterial and archaeal compositions were changeable as were the oceanographic conditions, and upwelling had a regional pressure while anthropogenic pressure was punctual. We suggest that the measurement of prokaryotic secondary production was associated with both Bacteria and Archaea activities, and that substrate availability and temperature determine nutrients cycling.

Micro-phytoplankton community structure in the coastal upwelling zone off Concepción (central Chile): Annual and inter-annual fluctuations in a highly dynamic environment

NASA Astrophysics Data System (ADS)

Anabalón, V.; Morales, C. E.; González, H. E.; Menschel, E.; Schneider, W.; Hormazabal, S.; Valencia, L.; Escribano, R.

2016-12-01

An intensification of upwelling-favorable winds in recent decades has been detected in some of the main eastern boundary current systems, especially at higher latitudes, but the response of coastal phytoplankton communities in the Humboldt Current System (HCS) remains unknown. At higher latitudes in the HCS (35-40°S), strong seasonality in wind-driven upwelling during spring-summer coincides with an annual increase in coastal chlorophyll-a and primary production, and a dominance of micro-phytoplankton. In order to understand the effects of potential upwelling intensification on the micro-phytoplankton community in this region, annual and inter-annual variability in its structure (total and taxa-specific abundance and biomass) and its association with oceanographic fluctuations were analyzed using in situ time series data (2002-2009) from a shelf station off Concepcion (36.5°S). At the annual scale, total mean abundance and biomass, attributed to a few dominant diatom taxa, were at least one order of magnitude greater during spring-summer than autumn-winter, in association with changes in upwelling and surface salinity and temperature, whereas macro-nutrient concentrations remained relatively high all the year. At the inter-annual scale, total abundance and biomass decreased during the upwelling season of the 2006-2009 period compared with the 2002-2006 period, notably due to lower abundances of Skeletonema and Leptocylindrus, but the relative dominance of a few taxa was maintained. The 2006-2009 period was characterized by higher upwelling intensity, colder and higher salinity waters, and changes in nutrient concentrations and ratios compared with the first period. The inter-annual changes in the micro-phytoplankton community were mostly associated with changes in surface salinity and temperature (changes in upwelling intensity) but also with changes in Si/N and N/P, which relate to other land-derived processes.

What drives the spatial variability of primary productivity and matter fluxes in the north-west African upwelling system? A modelling approach

NASA Astrophysics Data System (ADS)

Auger, Pierre-Amaël; Gorgues, Thomas; Machu, Eric; Aumont, Olivier; Brehmer, Patrice

2016-11-01

A comparative box analysis based on a multi-decadal physical-biogeochemical hindcast simulation (1980-2009) was conducted to characterize the drivers of the spatial distribution of phytoplankton biomass and production in the north-west (NW) African upwelling system. Alongshore geostrophic flow related to large-scale circulation patterns associated with the influence of coastal topography is suggested to modulate the coastal divergence, and then the response of nutrient upwelling to wind forcing. In our simulation, this translates into a coastal upwelling of nitrate being significant in all regions but the Cape Blanc (CB) area. However, upwelling is found to be the dominant supplier of nitrate only in the northern Saharan Bank (NSB) and the Senegalo-Mauritanian (SM) regions. Elsewhere, nitrate supply is dominated by meridional advection, especially off Cape Blanc. Phytoplankton displays a similar behaviour with a supply by lateral advection which equals the net coastal phytoplankton growth in all coastal regions except the Senegalo-Mauritanian area. Noticeably, in the Cape Blanc area, the net coastal phytoplankton growth is mostly sustained by high levels of regenerated production exceeding new production by more than twofold, which is in agreement with the locally weak input of nitrate by coastal upwelling. Further offshore, the distribution of nutrients and phytoplankton is explained by the coastal circulation. Indeed, in the northern part of our domain (i.e. Saharan Bank), the coastal circulation is mainly alongshore, resulting in low offshore lateral advection of nutrients and phytoplankton. Conversely, lateral advection transports coastal nutrients and phytoplankton towards offshore areas in the latitudinal band off the Senegalo-Mauritanian region. Moreover, this latter offshore region benefits from transient southern intrusions of nutrient-rich waters from the Guinean upwelling.

The circulation dynamics associated with a northern Benguela upwelling filament during October 2010

NASA Astrophysics Data System (ADS)

Muller, Annethea A.; Mohrholz, Volker; Schmidt, Martin

2013-07-01

Upwelling filaments, a common feature in all the major upwelling systems, are also regularly observed in the Benguela upwelling system and are thought to provide an effective mechanism for the exchange of matter between the shelf and the open ocean. The mesoscale dynamics of a northern Benguela upwelling filament located at approximately 18.5°S were examined and the associated transport was quantified. The development of the filament was tracked using optimal interpolated SST satellite data and two transects were consequently sampled across the feature using a towed undulating CTD (ScanFish). Additional hydrographic, nutrient and biological parameters were investigated at several stations along each transect. Following 7 days of strong upwelling favorable winds, sampling coincided with a period of relative wind relaxation and the filament was presumably in a decaying state. The basic mesoscale structure of the investigated filament corresponded well to what had previously been described for filaments from other eastern boundary current systems. The cross-shore transport associated with the filament was found to be significantly greater than the integrated Ekman transport in the region. With the combination of the high resolution dataset and a MOM-4 ecosystem model the complex mesoscale flow field associated with the feature could be observed and the counterbalancing onshore transport, associated with subsurface dipole eddies, was revealed within the filament. The results further suggest that an interaction between the offshore bending of flow at the Angola-Benguela Front (ABF), the detachment of the strong poleward flow from the coast as the thermal front meanders and the observed dipole eddies may be driving filament occurrence in the region off Cape Frio.

Virtual bronchoscopic navigation without X-ray fluoroscopy to diagnose peripheral pulmonary lesions: a randomized trial.

PubMed

Asano, Fumihiro; Ishida, Takashi; Shinagawa, Naofumi; Sukoh, Noriaki; Anzai, Masaki; Kanazawa, Kenya; Tsuzuku, Akifumi; Morita, Satoshi

2017-12-11

Transbronchial biopsy for peripheral pulmonary lesions is generally performed under X-ray fluoroscopy. Virtual bronchoscopic navigation (VBN) is a method in which virtual images of the bronchial route to the lesion are produced based on CT images obtained before VBN, and the bronchoscope is guided using these virtual images, improving the diagnostic yield of peripheral pulmonary lesions. VBN has the possibility of eliminating the need for X-ray fluoroscopy in the bronchoscopic diagnosis of peripheral lesions. To determine whether VBN can be a substitute for X-ray fluoroscopy, a randomized multicenter trial (non-inferiority trial) was performed in VBN and X-ray fluoroscopy (XRF) -assisted groups. The non-inferiority margin in the VBN-assisted group compared with the XRF-assisted group was set at 15%. The subjects consisted of 140 patients with peripheral pulmonary lesions with a mean diameter > 3 cm. In the VBN-assisted group, the bronchoscope was guided to the lesion using a VBN system without X-ray fluoroscopy. In the XRF-assisted group, the same bronchoscope was guided to the lesion under X-ray fluoroscopy. Subsequently, in both groups, the lesion was visualized using endobronchial ultrasonography with a guide sheath (EBUS/GS), and biopsy was performed. In this serial procedure, X-ray fluoroscopy was not used in the VBNA group. The subjects of analysis consisted of 129 patients. The diagnostic yield was 76.9% (50/65) in the VBN-assisted group and 85.9% (55/64) in the XRF-assisted group. The difference in the diagnostic yield between the two groups was -9.0% (95% confidence interval: -22.3% ~ 4.3%). The non-inferiority of the VBN-assisted group could not be confirmed. The rate of visualizing lesions by EBUS was 95.4% (62/65) in the VBN-assisted group and 96.9% (62/64) in the XRF-assisted group, being high in both groups. On EBUS/GS, a bronchoscope and biopsy instruments may be guided to the lesions using VBN without X-ray fluoroscopy, but X-ray fluoroscopy is necessary to improve the accuracy of sample collection from lesions. During transbronchial biopsy for peripheral pulmonary lesions, VBN cannot be a substitute for X-ray fluoroscopy. UMIN-CTR (UMIN000001710); registered 16 February 2009.

Upwelling characteristics in the Gulf of Finland (Baltic Sea) as revealed by Ferrybox measurements in 2007-2013

NASA Astrophysics Data System (ADS)

Kikas, Villu; Lips, Urmas

2016-07-01

Ferrybox measurements have been carried out between Tallinn and Helsinki in the Gulf of Finland (Baltic Sea) on a regular basis since 1997. The system measures autonomously water temperature, salinity, chlorophyll a fluorescence and turbidity and takes water samples for further analyses at a predefined time interval. We aimed to show how the Ferrybox technology could be used to study the coastal upwelling events in the Gulf of Finland. Based on the introduced upwelling index and related criteria, 33 coastal upwelling events were identified in May-September 2007-2013. The number of events, as well as the frequency of their occurrence and intensity expressed as a sum of daily average temperature deviations in the 20 km wide coastal area, were almost equal near the northern and southern coasts. Nevertheless, the wind impulse, which was needed to generate upwelling events of similar intensity, differed between the northern and southern coastal areas. It is suggested that the general thermohaline structure adapted to the prevailing forcing and the estuarine character of the basin weaken the upwelling created by the westerly to southwesterly (up-estuary) winds and strengthen the upwelling created by the easterly to northeasterly (down-estuary) winds. Two types of upwelling events were identified - one characterized by a strong temperature front and the other revealing gradual decrease in temperature from the open sea to the coastal area, with maximum temperature deviation close to the shore.

The physical oceanography of upwelling systems and the development of harmful algal blooms

PubMed Central

Pitcher, G.C.; Figueiras, F.G.; Hickey, B.M.; Moita, M.T.

2011-01-01

The upwelling systems of the eastern boundaries of the world’s oceans are susceptible to harmful algal blooms (HABs) because they are highly productive, nutrient-rich environments, prone to high-biomass blooms. This review identifies those aspects of the physical environment important in the development of HABs in upwelling systems through description and comparison of bloom events in the Benguela, California and Iberia systems. HAB development is dictated by the influence of wind stress on the surface boundary layer through a combination of its influence on surface mixed-layer characteristics and shelf circulation patterns. The timing of HABs is controlled by windstress fluctuations and buoyancy inputs at the seasonal, event and interannual scales. Within this temporal framework, various mesoscale features that interrupt typical upwelling circulation patterns, determine the spatial distribution of HABs. The inner shelf in particular provides a mosaic of shifting habitats, some of which favour HABs. Changes in coastline configuration and orientation, and bottom topography are important in determining the distribution of HABs through their influence on water stratification and retention. A spectrum of coastline configurations, including headlands, capes, peninsulas, Rías, bays and estuaries, representing systems of increasing isolation from the open coast and consequent increasing retention times, are assessed in terms of their vulnerability to HABs. PMID:22053120

Microbial Diversity of a Brazilian Coastal Region Influenced by an Upwelling System and Anthropogenic Activity

PubMed Central

Cury, Juliano C.; Araujo, Fabio V.; Coelho-Souza, Sergio A.; Peixoto, Raquel S.; Oliveira, Joana A. L.; Santos, Henrique F.; Dávila, Alberto M. R.; Rosado, Alexandre S.

2011-01-01

Background Upwelling systems are characterised by an intense primary biomass production in the surface (warmest) water after the outcrop of the bottom (coldest) water, which is rich in nutrients. Although it is known that the microbial assemblage plays an important role in the food chain of marine systems and that the upwelling systems that occur in southwest Brazil drive the complex dynamics of the food chain, little is known about the microbial composition present in this region. Methodology/Principal Findings We carried out a molecular survey based on SSU rRNA gene from the three domains of the phylogenetic tree of life present in a tropical upwelling region (Arraial do Cabo, Rio de Janeiro, Brazil). The aim was to analyse the horizontal and vertical variations of the microbial composition in two geographically close areas influenced by anthropogenic activity (sewage disposal/port activity) and upwelling phenomena, respectively. A lower estimated diversity of microorganisms of the three domains of the phylogenetic tree of life was found in the water of the area influenced by anthropogenic activity compared to the area influenced by upwelling phenomena. We observed a heterogenic distribution of the relative abundance of taxonomic groups, especially in the Archaea and Eukarya domains. The bacterial community was dominated by Proteobacteria, Cyanobacteria and Bacteroidetes phyla, whereas the microeukaryotic community was dominated by Metazoa, Fungi, Alveolata and Stramenopile. The estimated archaeal diversity was the lowest of the three domains and was dominated by uncharacterised marine Crenarchaeota that were most closely related to Marine Group I. Conclusions/Significance The variety of conditions and the presence of different microbial assemblages indicated that the area of Arraial do Cabo can be used as a model for detailed studies that contemplate the correlation between pollution-indicating parameters and the depletion of microbial diversity in areas close to anthropogenic activity; functional roles and geochemical processes; phylogeny of the uncharacterised diversity; and seasonal variations of the microbial assemblages. PMID:21304582

A Holocene record of ocean productivity and upwelling from the northern California continental slope

USGS Publications Warehouse

Addison, Jason A.; Barron, John A.; Finney, Bruce P.; Kusler, Jennifer E.; Bukry, David; Heusser, Linda E.; Alexander, Clark R.

2018-01-01

The Holocene upwelling history of the northern California continental slope is examined using the high-resolution record of TN062-O550 (40.9°N, 124.6°W, 550 m water depth). This 7-m-long marine sediment core spans the last ∼7500 years, and we use it to test the hypothesis that marine productivity in the California Current System (CCS) driven by coastal upwelling has co-varied with Holocene millennial-scale warm intervals. A combination of biogenic sediment concentrations (opal, total organic C, and total N), stable isotopes (organic matter δ13C and bulk sedimentary δ15N), and key microfossil indicators of upwelling were used to test this hypothesis. The record of biogenic accumulation in TN062-O550 shows considerable Holocene variability despite being located within 50 km of the mouth of the Eel River, which is one of the largest sources of terrigenous sediment to the Northeast Pacific Ocean margin. A key time interval beginning at ∼2900 calibrated years before present (cal yr BP) indicates the onset of modern upwelling in the CCS, and this period also corresponds to the most intense period of upwelling in the last 7500 years. When these results are placed into a regional CCS context during the Holocene, it was found that the timing of upwelling intensification at TN062-O550 corresponds closely to that seen at nearby ODP Site 1019, as well as in the Santa Barbara Basin of southern California. Other CCS records with less refined age control show similar results, which suggest late Holocene upwelling intensification may be synchronous throughout the CCS. Based on the strong correspondence between the alkenone sea surface temperature record at ODP Site 1019 and the onset of late Holocene upwelling in northern California, we suggest that CCS warming may be conducive to upwelling intensification, though future changes are unclear as the mechanisms forcing SST variability may differ.

A Holocene record of ocean productivity and upwelling from the northern California continental slope

NASA Astrophysics Data System (ADS)

Addison, J. A.; Barron, J. A.; Finney, B.; Kusler, J. E.; Bukry, D.; Heusser, L. E.; Alexander, C. R., Jr.

2016-12-01

The Holocene upwelling history of the northern California continental slope is examined using a 7-m-long marine sediment core (TN062-O550; 40.9°N, 124.6°W, 550 m water depth) collected offshore from Eureka, CA, that spans the last 7,400 calibrated years before present (cal yrs BP). A combination of biogenic sediment concentrations (opal, total organic C, and total N), stable isotopes (organic matter δ13C and bulk sedimentary δ15N), and key microfossil indicators of upwelling were used to test the hypothesis that marine productivity in the California Current System (CCS) driven by coastal upwelling has co-varied with global Holocene millennial-scale warm intervals. Results show biogenic sediment accumulation in TN062-O550 varied considerably during the Holocene, despite being located within 50 km of the mouth of the Eel River, one of the largest sources of terrigenous sediment to the Northeast Pacific Ocean margin. A key time interval beginning at 2900 cal yr BP indicates the onset of modern upwelling in the CCS, and that this period also corresponds to the most intense period of upwelling in the last 7,400 years. When these results are placed into a regional CCS context during the Holocene, it was found that the timing of upwelling intensification as recorded in TN062-O550 corresponds closely to that seen at nearby ODP Site 1019 as well as in the Santa Barbara Basin of southern California. Other CCS records with less high-quality age control show similar results, which suggest late Holocene upwelling intensification may be synchronous throughout the CCS. Based on the strong correspondence between the alkenone-derived sea surface temperature record at ODP Site 1019 and the onset of late Holocene upwelling in northern California, we tentatively suggest that regional CCS warming may be conducive to upwelling intensification in the future.

Upwelling Radiance at 976 nm Measured from Space Using a CCD Camera

NASA Technical Reports Server (NTRS)

Biswas, Abhijit; Kovalik, Joseph M.; Oaida, Bogdan V.; Abrahamson, Matthew J.; Wright, Malcolm W.

2015-01-01

The Optical Payload for Lasercomm Science (OPALS) Flight System on-board the International Space Station uses a charge coupled device (CCD) camera for receiving a beacon laser from Earth. Relative measurements of the background contributed by upwelling radiance under diverse illumination conditions and varying terrain is presented. In some cases clouds in the field-of-view allowed a comparison of terrestrial and cloud-top upwelling radiance. In this paper we will report these measurements and examine the extent of agreement with atmospheric model predictions.

Climate change and ocean deoxygenation within intensified surface-driven upwelling circulations.

PubMed

Bakun, Andrew

2017-09-13

Ocean deoxygenation often takes place in proximity to zones of intense upwelling. Associated concerns about amplified ocean deoxygenation arise from an arguable likelihood that coastal upwelling systems in the world's oceans may further intensify as anthropogenic climate change proceeds. Comparative examples discussed include the uniquely intense seasonal Somali Current upwelling, the massive upwelling that occurs quasi-continuously off Namibia and the recently appearing and now annually recurring 'dead zone' off the US State of Oregon. The evident 'transience' in causal dynamics off Oregon is somewhat mirrored in an interannual-scale intermittence in eruptions of anaerobically formed noxious gases off Namibia. A mechanistic scheme draws the three examples towards a common context in which, in addition to the obvious but politically problematic remedy of actually reducing 'greenhouse' gas emissions, the potentially manageable abundance of strongly swimming, finely gill raker-meshed small pelagic fish emerges as a plausible regulating factor.This article is part of the themed issue 'Ocean ventilation and deoxygenation in a warming world'. © 2017 The Author(s).

Intensification of upwelling along Oman coast in a warming scenario

NASA Astrophysics Data System (ADS)

Praveen, V.; Ajayamohan, R. S.; Valsala, V.; Sandeep, S.

2016-07-01

The oceanic impact of poleward shift in monsoon low-level jet (MLLJ) is examined using a Regional Ocean Modeling System (ROMS). Two sets of downscaling experiments were conducted using ROMS with boundary and initial conditions from six CMIP5 models. While outputs from the historical run (1981-2000) acts as forcing for the first, the second uses RCP8.5 (2080-2099). By comparing the outputs, it is found that Oman coast will experience an increase in upwelling in tune with MLLJ shift. Consistent with the changes in upwelling and zonal Ekman transport, temperature, salinity, and productivity show significant changes near the Oman coast. The changes in MLLJ causes the coastal wind to angle against the Oman coast in such a fashion that the net upwelling increases in the next century and so does the marine productivity. This study contrasts the general view of weakening of upwelling along the Arabian coasts due to the weakening of monsoon winds.

Remote sensing and ichthyoplankton ecology of coastal upwelling fronts off central California

NASA Astrophysics Data System (ADS)

Bjorkstedt, Eric Peter

1998-11-01

Recruitment to many marine populations is determined by processes affecting survival and transport of planktonic larvae. Coastal upwelling poses a trade-off between larval access to high productivity supported by upwelled nutrients and increased risk of offshore transport and failure to return to coastal habitats. I used plankton surveys, remote sensing, and a simple model to investigate the role of coastal upwelling fronts and behavior in pelagic ecology and recruitment success, focussing on rockfish (Sebastes spp.) off central California. Distributions of early stage larvae suggest that coastal upwelling fronts reduce offshore transport of rockfish larvae, in contrast to distributions of taxa with life histories that minimize larval exposure to strong upwelling. Coincident distributions of larval fish, prey (i.e., small copepods and invertebrate eggs) and phytoplankton patches indicate that coastal upwelling fronts provide enhanced foraging conditions for larvae. Thus, coastal upwelling fronts may allow coastal taxa to successfully exploit high productivity during the upwelling season while reducing the risk of offshore transport. I developed a novel method for utilizing a single HF radar to resolve currents and detect fronts that matched sea surface temperature fronts generated by coastal upwelling. Fronts and currents detected with NF radar affect distributions and transport of planktonic larval fish and intertidal barnacle larvae, demonstrating that remote sensing with HF radar can support field and modelling research on ecological dynamics in coastal marine systems. I used an empirically-based model that incorporated the advection-foraging trade-off and long-distance swimming as an active settlement behavior to investigate optimal settlement strategies as a function of pelagic transport and growth. For parameters loosely describing pelagic stages of rockfish, the model predicts optimal settling strategies (ages and sizes) for pelagic juveniles that roughly match observed values for settling rockfish and suggests optimal spawning locations for adults. The model suggests that offshore transport is more important than growth in determining recruitment success. Thus, coastal upwelling fronts may favor recruitment more by reducing offshore transport than by providing rich food resources. Results of this model represent an initial step towards determining the role of active settlement behaviors in population dynamics and life history evolution.

Do submesoscale frontal processes ventilate the oxygen minimum zone off Peru?

NASA Astrophysics Data System (ADS)

Thomsen, S.; Kanzow, T.; Colas, F.; Echevin, V.; Krahmann, G.; Engel, A.

2016-08-01

The Peruvian upwelling system encompasses the most intense and shallowest oxygen minimum zone (OMZ) in the ocean. This system shows pronounced submesoscale activity like filaments and fronts. We carried out glider-based observations off Peru during austral summer 2013 to investigate whether submesoscale frontal processes ventilate the Peruvian OMZ. We present observational evidence for the subduction of highly oxygenated surface water in a submesoscale cold filament. The subduction event ventilates the oxycline but does not reach OMZ core waters. In a regional submesoscale-permitting model we study the pathways of newly upwelled water. About 50% of upwelled virtual floats are subducted below the mixed layer within 5 days emphasizing a hitherto unrecognized importance of subduction for the ventilation of the Peruvian oxycline.

The Arabian Sea as a high-nutrient, low-chlorophyll region during the late Southwest Monsoon

NASA Astrophysics Data System (ADS)

Naqvi, S. W. A.; Moffett, J. W.; Gauns, M. U.; Narvekar, P. V.; Pratihary, A. K.; Naik, H.; Shenoy, D. M.; Jayakumar, D. A.; Goepfert, T. J.; Patra, P. K.; Al-Azri, A.; Ahmed, S. I.

2010-01-01

Extensive observations during the late Southwest Monsoon of 2004 over the Indian and Omani shelves, and along an east-west transect reveal a mosaic of biogeochemical provinces including an unexpected high-nutrient, low-chlorophyll condition off the southern Omani coast. This feature, coupled with other characteristics of the system, suggest a close similarity between the Omani upwelling system and the Peruvian and California upwelling systems, where primary production (PP) is limited by iron. An intensification of upwelling, reported to have been caused by the decline in the winter/spring Eurasian snow cover since 1997, is not supported by in situ hydrographic and chlorophyll measurements as well as a reanalysis of ocean colour data extending to 2009. Iron limitation of PP may complicate simple relationship between upwelling and PP assumed by previous workers, and contribute to the anomalous offshore occurrence of the most severe oxygen (O2) depletion in the region. Over the Indian shelf, affected by very shallow O2-deficient zone, high PP is restricted to a thin, oxygenated surface layer probably due to unsuitability of the O2-depleted environment for the growth of oxygenic photosynthesizers.

Coastal Jets, Oceanic Upwelling, Mesoscale Eddies, and Clouds in the Southeast Pacific

NASA Astrophysics Data System (ADS)

Hong, X.; Wang, S.; Jiang, Q.; O'Neill, L. W.; Hodur, R.; Chen, S.; Martin, P.; Cummings, J. A.

2009-12-01

Coastal jets, oceanic upwelling, mesoscale eddies, and clouds in the Southeast Pacific (SEP) are studied using the two-way-coupled COAMPS/NCOM system with the NCODA for the ocean data assimilation. The coupled system was run for the period of the VAMOS Ocean-Cloud-Atmosphere-Land Study (VOCALS) field campaign from 20 October to 30 November, 2008. The investigation of the feedback between the atmosphere and the ocean is focused on the periods of the strong and the weak coastal jets. During the strong coastal jet period, colder and drier air along the coast results in larger surface heat fluxes and increased boundary layer height. More extensive and organized clouds are generated in the strongly unstable conditions in the atmospheric boundary layer. The oceanic upwelling is stronger and the upwelled cold water extends further offshore. During the weak coastal jet period, the cyclonic and anti-cyclonic oceanic eddies propagate westward more significantly. The inertial oscillations induced by the variations of the wind stress also increase in strength with stronger phase shifts between the oscillations in the upper and the lower layers of the ocean. In addition, the model results from the coupled system were evaluated with available observations from the VOCALS field campaign.

Implications of Upwells as Hydrodynamic Jets in a Pulse Jet Mixed System

DOE Office of Scientific and Technical Information (OSTI.GOV)

Pease, Leonard F.; Bamberger, Judith A.; Minette, Michael J.

2015-08-01

This report evaluates the physics of the upwell flow in pulse jet mixed systems in the Hanford Tank Waste Treatment and Immobilization Plant (WTP). Although the initial downward flow and radial flow from pulse jet mixers (PJMs) has been analyzed in some detail, the upwells have received considerably less attention despite having significant implications for vessel mixing. Do the upwells behave like jets? How do the upwells scale? When will the central upwell breakthrough? What proportion of the vessel is blended by the upwells themselves? Indeed, how the physics of the central upwell is affected by multiple PJMs (e.g., sixmore » in the proposed mixing vessels), non-Newtonian rheology, and significant multicomponent solids loadings remain unexplored. The central upwell must satisfy several criteria to be considered a free jet. First, it must travel for several diameters in a nearly constant direction. Second, its velocity must decay with the inverse of elevation. Third, it should have an approximately Gaussian profile. Fourth, the influence of surface or body forces must be negligible. A combination of historical data in a 12.75 ft test vessel, newly analyzed data from the 8 ft test vessel, and conservation of momentum arguments derived specifically for PJM operating conditions demonstrate that the central upwell satisfies these criteria where vigorous breakthrough is achieved. An essential feature of scaling from one vessel to the next is the requirement that the underlying physics does not change adversely. One may have confidence in scaling if (1) correlations and formulas capture the relevant physics; (2) the underlying physics does not change from the conditions under which it was developed to the conditions of interest; (3) all factors relevant to scaling have been incorporated, including flow, material, and geometric considerations; and (4) the uncertainty in the relationships is sufficiently narrow to meet required specifications. Although the central upwell satisfies these criteria when vigorous breakthrough is achieved, not all available data follow the free jet profile for the central upwell, particularly at lower nozzle velocities. Alternative flow regimes are considered and new models for cloud height, “cavern height,” and the rate of jet penetration (jet celerity) are benchmarked against data to anchor scaling analyses. This analytical modeling effort to provide a technical basis for scaling PJM mixed vessels has significant implications for vessel mixing, because jet physics underlies “cavern” height, cloud height, and the volume of mixing considerations. A new four-parameter cloud height model compares favorably to experimental results. This model is predictive of breakthrough in 8 ft vessel tests with the two-part simulant. Analysis of the upwell in the presence of yield stresses finds evidence of expanding turbulent jets, confined turbulent jets, and confined laminar flows. For each, the critical elevation at which jet momentum depletes is predicted, which compare favorably to experimental cavern height data. Partially coupled momentum and energy balances suggest that these are limiting cases of a gradual transition from a turbulent expanding flow to a confined laminar flow. This analysis of the central upwell alone lays essential groundwork for complete analysis of mode three mixing (i.e., breakthrough with slow peripheral mixing). Consideration of jet celerity shows that the rate of jet penetration is a governing consideration in breakthrough to the surface. Estimates of the volume of mixing are presented. This analysis shows that flow along the vessel wall is sluggish such that the central upwell governs the volume of mixing. This analysis of the central upwell alone lays essential groundwork for complete analysis of mode three mixing and estimates of hydrogen release rates from first principles.« less

Across-shelf variability of phytoplankton composition, photosynthetic parameters and primary production in the NW Iberian upwelling system

NASA Astrophysics Data System (ADS)

Lorenzo, Luisa M.; Arbones, Belén; Tilstone, Gavin H.; Figueiras, Francisco G.

2005-02-01

Hydrographic conditions, phytoplankton composition and biomass, photosynthetic parameters and primary production were determined in the Ría de Vigo and adjacent shelf waters during April-May 1997 and September 1998. The sampling was designed to find the seasonal downwelling-upwelling and upwelling-downwelling transition periods characteristic of spring and autumn phytoplankton blooms. There was upwelling relaxation event followed by downwelling during both spring and autumn cruises. Temperature and salinity distributions showed that ría and shelf waters formed two distinct domains, which were separated by a thermohaline front at the mouth of the ría. The phytoplankton composition was completely different in the two environments. Cyanobacteria dominated on the shelf and constituted 46-66% of total phytoplankton biomass, while large phytoplankton (diatoms and dinoflagellates) were more abundant in the ría, especially during upwelling relaxation. However, the high shelf-ría exchange induced by a strong downwelling event on 7 September 1998 removed large phytoplankton (mainly diatoms) from the water column in the ría. Chlorophyll-specific maximum photosynthetic rates ( PmB) were significantly higher in the ría domain during upwelling relaxation, when autotrophic microplankton dominated in the interior. Primary production varied from 0.63 to 2.6 g C m -2 day -1 during the spring cruise and between 0.32 and 2.09 g C m -2 day -1 during the autumn cruise, with the highest values in the ría during both cruises. Primary production was relatively constant on the shelf with no significant differences between cruises, whereas differences were significant in the ría, with higher values during upwelling relaxation periods and lower values during downwelling. Analysis of light saturation parameters and light absorbed by phytoplanton in the water column suggests that photosynthesis was not light-limited either on the shelf or in the ría. It is concluded that upwelling-downwelling cycles were the main driving force, through changes in autotrophic microplankton biomass in the ría, that caused the variability observed in the ría-shelf system.

Modeling new production in upwelling centers - A case study of modeling new production from remotely sensed temperature and color

NASA Technical Reports Server (NTRS)

Dugdale, Richard C.; Wilkerson, Frances P.; Morel, Andre; Bricaud, Annick

1989-01-01

A method has been developed for estimating new production in upwelling systems from remotely sensed surface temperatures. A shift-up model predicts the rate of adaptation of nitrate uptake. The time base for the production cycle is obtained from a knowledge of surface heating rates and differences in temperature between the point of upwelling and each pixel. Nitrate concentrations are obtained from temperature-nitrate regression equations. The model was developed for the northwest Africa upwelling region, where shipboard measurements of new production were available. It can be employed in two modes, the first using only surface temperatures, and the second in which CZCS color data are incorporated. The major advance offered by this method is the capability to estimate new production on spatial and time scales inaccessible with shipboard approaches.

Steps in the intensification of Benguela upwelling over the Walvis Ridge during Miocene and Pliocene

NASA Astrophysics Data System (ADS)

Hoetzel, Sebastian; Dupont, Lydie M.; Marret, Fabienne; Jung, Gerlinde; Wefer, Gerold

2017-01-01

Upwelling is a significant part of the ocean circulation controlling largely the transport of nutrient-rich cold waters to the surface and therefore influencing ocean productivity and global climate. The Benguela upwelling system (BUS) is one of the major upwelling areas in the world. Previous reconstructions of the BUS mainly focused on the onset and intensification in southern and central parts, but changes of the northern part have been rarely investigated in detail. Using the Late Miocene to Pliocene organic-walled dinoflagellate cyst record of ODP Site 1081, we reconstruct and discuss the early upwelling history over the Walvis Ridge with a special focus on the movement of the Angola-Benguela Front (ABF). We suggest that during the Late Miocene the Angola Current flowed southwards over the Walvis Ridge more frequently than today because the ABF was probably located further south as a result of a weaker meridional temperature gradient. A possible strengthening of the meridional gradient during the latest Miocene to early Pliocene in combination with uplift of south-western Africa intensified the upwelling along the coast and increased the upwelling's filaments over the Walvis Ridge. An intermediate period from 6.2 to 5.5 Ma is shown by the dominance of Habibacysta tectata, cysts of a cool-tolerant dinoflagellate known from the northern Atlantic, indicating changing oceanic conditions contemporaneous with the Messinian Salinity Crisis. From 4.3 Ma on, the upwelling signal got stronger again and waters were well-mixed and nutrient-rich. Our results indicate a northward migration of the ABF as early as 7 Ma and the initial stepwise intensification of the BUS.

A theoretical study of topographic effects on coastal upwelling and cross-shore exchange

NASA Astrophysics Data System (ADS)

Song, Y. Tony; Chao, Yi

The effects of topographic variations on coastal upwelling and cross-shore exchange are examined with a theoretical, continuously stratified, three-dimensional coastal ocean model. The model takes into account topographic variations in both alongshore and cross-shore directions and allows analytical solutions with an Ekman surface layer that faithfully represents the physical nature of the coastal upwelling system. Theoretical solutions with any analytical form of alongshore-varying topography can be solved based on the perturbation method of Killworth [J. Phys. Oceanogr. 8 (1978) 188]. Analyses of the model solutions lead to the following conclusions: The variation of upwelling fronts and currents is shown to be caused by the combined effect of topography and stratification. Topographic variation causes uneven upwelling distribution and leads to density variation, which results in a varying horizontal pressure gradient field that causes the meandering currents. The variation index is dependent upon a bilinear function of their physical parameters--the ratio of the topographic variation depth to the total depth and Burger's number of stratification. Cross-shore slope is found to play a role in maintaining the meandering structure of the alongshore currents. The anticyclonic circulations can further induce downwelling on the offshore side of the current, while the cyclonic circulations enhance upwelling and form upwelling centers on the inshore side of the current. Alongshore topography does not change the total upwelled water, i.e., the total Ekman pumping is conserved. However, it increases cross-exchange of water masses by transporting inshore (offshore) water near topographic features far offshore (inshore) from the mean position of the front. The applicability and limitations of the theory are also discussed.

Short-term meso-scale variability of mesozooplankton communities in a coastal upwelling system (NW Spain)

NASA Astrophysics Data System (ADS)

Roura, Álvaro; Álvarez-Salgado, Xosé A.; González, Ángel F.; Gregori, María; Rosón, Gabriel; Guerra, Ángel

2013-02-01

The short-term, meso-scale variability of the mesozooplankton community present in the coastal upwelling system of the Ría de Vigo (NW Spain) has been analysed. Three well-defined communities were identified: coastal, frontal and oceanic, according to their holoplankton-meroplankton ratio, richness, and total abundance. These communities changed from summer to autumn due to a shift from downwelling to upwelling-favourable conditions coupled with taxa dependent changes in life strategies. Relationships between the resemblance matrix of mesozooplankton and the resemblance matrices of meteorologic, hydrographic and community-derived biotic variables were determined with distance-based linear models (DistLM, 18 variables), showing an increasing amount of explained variability of 6%, 16.1% and 54.5%, respectively. A simplified model revealed that the variability found in the resemblance matrix of mesozooplankton was mainly described by the holoplankton-meroplankton ratio, the total abundance, the influence of lunar cycles, the upwelling index and the richness; altogether accounting for 64% of the total variability. The largest variability of the mesozooplankton resemblance matrix (39.6%) is accounted by the holoplankton-meroplankton ratio, a simple index that describes appropriately the coastal-ocean gradient. The communities described herein kept their integrity in the studied upwelling and downwelling episodes in spite of the highly advective environment off the Ría de Vigo, presumably due to behavioural changes in the vertical position of the zooplankton.

Endosonography of a Pulmonary Artery Obstruction in Echinococcosis.

PubMed

Schuuring, Mark J; Bonta, Peter I; van Vugt, Michele; Smithuis, Frank; van Delden, Otto M; Annema, Jouke T; Stijnis, Kees

2016-01-01

A 44-year-old woman with a history of pulmonary embolism and abdominal echinococcosis complained of sudden thoracic pain and shortness of breath. A D-dimer of 77.5 mg/l (reference ≤0.5 mg/l) was found. Chest CT scan revealed obstruction of the right lower and middle lobe pulmonary artery (PA). Anticoagulation therapy was initiated for the presumed diagnosis of recurrent pulmonary embolism. However, due to persistent symptoms of dyspnea, follow-up CT angiography of the chest was performed 3 months later. A persistent PA obstruction was found and the presumed diagnosis of embolism was questioned. Subsequently, endobronchial ultrasound (EBUS) imaging was performed to support an alternative diagnosis. EBUS imaging showed an inhomogeneous, sharply demarcated, intravascular lesion with round hypoechoic areas compatible with cysts. The diagnosis of embolism was rejected and treatment with albendazole was initiated for pulmonary echinococcosis. Echinococcosis is a parasitic disease and cystic spread in the PA is exceptional. The patient has remained stable for more than 4 years. In case of disease progression, including progressive PA obstruction or life-threatening hemoptysis, surgical resection will be considered. © 2016 S. Karger AG, Basel.

Export of pre-aged, labile DOM from a central California coastal upwelling system: Insights from D/L amino acids and Δ14C signatures

NASA Astrophysics Data System (ADS)

Walker, B. D.; Shen, Y.; Benner, R. H.; Druffel, E. R. M.

2014-12-01

Coastal upwelling zones are among the most productive regions in the world and play a major role in global carbon and nitrogen cycles. Recent research suggests that a substantial fraction of newly fixed organic matter is exported offshore in the form of dissolved organic matter (DOM). However, to date only a few studies have examined DOM composition in the context of production and export from upwelling systems. The ultimate fate and geochemical impact of coastal DOM exported to offshore and mesopelagic ecosystems also remains largely unknown. Between 2007-2009 we conducted a high-resolution biogeochemical time series at the Granite Canyon Marine Pollution Studies Lab in part to evaluate the seasonal production and export of DOM from the Central CA coast. Our previous work demonstrated substantial, albeit disparate, seasonal production of dissolved organic carbon and nitrogen (DOC, DON) - with high DON (and low C:N ratios) produced during upwelling and high DOC produced during summer/fall water column stratification (Walker and McCarthy, 2012). Here we present new total dissolved D/L amino acid (TDAA) and UV-oxidizable DOC radiocarbon (Δ14C) data with the goal of determining the relative sources (heterotrophic vs. autotrophic), bioavailability, microbial processing and 14C-ages of C-rich vs. N-rich DOM exported from this upwelling system. Our results suggest that C-rich DOM produced during water column stratification carries a large microbial signature (i.e. high D/L AA ratios and non-protein AA abundance), whereas N-rich DOM produced during upwelling appears to be fresh, autotrophic DOM (i.e. lowest D/L AA ratios and highest TDAA abundance). DOM Δ14C signatures also did not approximate in situ dissolved inorganic carbon (DIC), and instead were far more negative and highly correlated to water mass density. Together our results indicate a previously unrecognized source of highly labile yet pre-aged DOM potentially impacting offshore and mesopelagic ecosystems.

Reconstructing Holocene Upwelling Conditions in Monterey Bay, California

NASA Astrophysics Data System (ADS)

Owen, P. W.; Wagner, A. J.; Addison, J. A.; Schwartz, V.; Barron, J. A.; Carlin, J. A.

2017-12-01

Upwelling along the eastern margin of the North Pacific is vital to the California Current System (CCS) and is a major contributing factor to the diverse marine ecosystems along the US West Coast. Prior studies hypothesize climate change will accelerate the alongshore equatorward winds that drive coastal upwelling, with the greatest increase in upwelling occurring within the poleward portion (N of 40°N) of the CCS. However, other studies have suggested that future upwelling changes in the southern portion (S of 35°N) of the CCS are less certain. Here we present a geological perspective into past Holocene upwelling along the central California coast from the Monterey Bay National Marine Sanctuary to provide a potential analogue for future upwelling conditions and a deeper understanding of CCS dynamics. A smear slide analysis of marine sediment cores taken from [1] the Pioneer Seamount off the Central California coast, [2] offshore of Pt. Año Nuevo, and [3] near the mouth of the Salinas River shows varying percentages of biogenic and terrigenous sediments during the past 11,000 years, with a shift toward greater biogenic silica sediments occurring approximately 3,000 cal yrs BP in the offshore site. In addition, an analysis of the diatom assemblages is used as a proxy for upwelling conditions. Preliminary results suggest a greater abundance of F. doliolus, a diatom species commonly used as a proxy for increased productivity and upwelling, occurs around 3,500 cal years BP. These results are then compared to existing calibrated X-ray computed tomography (CT) bulk density, total organic carbon (TOC), and biogenic silica (opal) measurements during periods of known climatic variability such as the Holocene Climate Optimum, Medieval Warm Period and Little Ice Age. Our results can provide a new high-resolution study of the central CCS throughout the Holocene, and give us a better understanding as to how future oceanic conditions may change the marine ecosystems along California's coast.

Acidification mediated by a river plume and coastal upwelling on a fringing reef at the east coast of Hainan Island, Northern South China Sea

NASA Astrophysics Data System (ADS)

Dong, Xu; Huang, Haining; Zheng, Nan; Pan, Aijun; Wang, Sumin; Huo, Cheng; Zhou, Kaiwen; Lin, Hui; Ji, Weidong

2017-09-01

We investigated the dynamics of carbonate system which was greatly modulated by a river plume and coastal upwelling in July 2014 and July 2015 at the east coast of Hainan Island where a fringing reef distributes inshore. By using a three end-member mixing model, we semiquantitatively estimated the removal of dissolved inorganic carbon (DIC) mediated by biological production in the river plume and upwelled water to be 13 ± 17 and 15 ± 16 μmol kg-1, respectively. The enhanced organic production was mainly responsible for these DIC consumptions in both two regimes, however, nearly a half of DIC removal was attributed to biocalcification in the plume system while it was negligible in the upwelling system. Furthermore, the modeled results over reefs revealed that river plume and coastal upwelling were two major threats of acidification to coral communities at the east coast of Hainan Island during cruises. In comparison, the biological contribution to acidification was limited for balancing between organic production and biocalcification during July 2014 cruise, whereas the acidification was greatly intensified by organic degradation during July 2015 cruise. It was verified that naturally local acidification (physical and biological processes) played a major role in great pH decreases on a short-term scale, leading to coastal waters more vulnerable to anthropogenic "ocean acidification" (uptake of atmospheric CO2) by reducing buffering capacity of waters. Finally, effects of acidification associated with other local threats on a fringing reef were further depicted with a conceptual model.

Scaling Coastal Ecosystems to Oceanographic and Climatic Drivers: Making Sense of Community Variation on Rocky Shores Using the Comparative-Experimental Approach in Upwelling and Downwelling Systems

NASA Astrophysics Data System (ADS)

Menge, B. A.; Gouhier, T.; Chan, F.; Hacker, S.; Menge, D.; Nielsen, K. J.

2016-02-01

Ecology focuses increasingly on the issue of matching spatial and temporal scales responsible for ecosystem pattern and dynamics. Benthic coastal communities traditionally were studied at local scales using mostly short-term research, while environmental (oceanographic, climatic) drivers were investigated at large scales (e.g., regional to oceanic, mostly offshore) using combined snapshot and monitoring (time series) research. The comparative-experimental approach combines local-scale studies at multiple sites spanning large-scale environmental gradients in combination with monitoring of inner shelf oceanographic conditions including upwelling/downwelling wind forcing and their consequences (e.g., temperature), and inputs of subsidies (larvae, phytoplankton, detritus). Temporal scale varies depending on the questions, but can extend from years to decades. We discuss two examples of rocky intertidal ecosystem dynamics, one at a regional scale (California Current System, CCS) and one at an interhemispheric scale. In the upwelling-dominated CCS, 52% and 32% of the variance in local community structure (functional group abundances at 13 sites across 725 km) was explained by external factors (ecological subsidies, oceanographic conditions, geographic location), and species interactions, respectively. The interhemispheric study tested the intermittent upwelling hypothesis (IUH), which predicts that key ecological processes will vary unimodally along a persistent downwelling to persistent upwelling gradient. Using 14-22 sites, unimodal relationships between ecological subsidies (phytoplankton, prey recruitment), prey responses (barnacle colonization, mussel growth) and species interactions (competition rate, predation rate and effect) and the Bakun upwelling index calculated at each site accounted for 50% of the variance. Hence, external factors can account for about half of locally-expressed community structure and dynamics.

Diatoms as a paleoproductivity proxy in the NW Iberian coastal upwelling system (NE Atlantic)

NASA Astrophysics Data System (ADS)

Zúñiga, Diana; Santos, Celia; Froján, María; Salgueiro, Emilia; Rufino, Marta M.; De la Granda, Francisco; Figueiras, Francisco G.; Castro, Carmen G.; Abrantes, Fátima

2017-03-01

The objective of the current work is to improve our understanding of how water column diatom's abundance and assemblage composition is seasonally transferred from the photic zone to seafloor sediments. To address this, we used a dataset derived from water column, sediment trap and surface sediment samples recovered in the NW Iberian coastal upwelling system. Diatom fluxes (2.2 (±5.6) 106 valves m-2 d-1) represented the majority of the siliceous microorganisms sinking out from the photic zone during all studied years and showed seasonal variability. Contrasting results between water column and sediment trap diatom abundances were found during downwelling periods, as shown by the unexpectedly high diatom export signals when diatom-derived primary production achieved their minimum levels. They were principally related to surface sediment remobilization and intense Minho and Douro river discharge that constitute an additional source of particulate matter to the inner continental shelf. In fact, contributions of allochthonous particles to the sinking material were confirmed by the significant increase of both benthic and freshwater diatoms in the sediment trap assemblage. In contrast, we found that most of the living diatom species blooming during highly productive upwelling periods were dissolved during sinking, and only those resistant to dissolution and the Chaetoceros and Leptocylindrus spp. resting spores were susceptible to being exported and buried. Furthermore, Chaetoceros spp. dominate during spring-early summer, when persistent northerly winds lead to the upwelling of nutrient-rich waters on the shelf, while Leptocylindrus spp. appear associated with late-summer upwelling relaxation, characterized by water column stratification and nutrient depletion. These findings evidence that the contributions of these diatom genera to the sediment's total marine diatom assemblage should allow for the reconstruction of different past upwelling regimes.

Endobronchial Ultrasound-Guided Cautery-Assisted Transbronchial Forceps Biopsies: Safety and Sensitivity Relative to Transbronchial Needle Aspiration.

PubMed

Bramley, Kyle; Pisani, Margaret A; Murphy, Terrence E; Araujo, Katy L; Homer, Robert J; Puchalski, Jonathan T

2016-05-01

Endobronchial ultrasound (EBUS)-guided transbronchial needle aspiration (TBNA) is important in the evaluation of thoracic lymphadenopathy. Reliably providing excellent diagnostic yield for malignancy, its diagnosis of sarcoidosis is inconsistent. Furthermore, TBNA may not suffice when larger "core biopsy" samples of malignant tissue are required. The primary objective of this study was to determine if the sequential use of TBNA and a novel technique called cautery-assisted transbronchial forceps biopsy (ca-TBFB) was safe. Secondary outcomes included sensitivity and successful acquisition of tissue. The study prospectively enrolled 50 unselected patients undergoing convex-probe EBUS. All lymph nodes exceeding 1 cm were sequentially biopsied under EBUS guidance using TBNA and ca-TBFB. Safety and sensitivity were assessed at the nodal level for 111 nodes. Results of each technique were also reported for each patient. There were no significant adverse events. In nodes determined to be malignant, TBNA provided higher sensitivity (100%) than ca-TBFB (78%). However, among nodes with granulomatous inflammation, ca-TBFB exhibited higher sensitivity (90%) than TBNA (33%). On the one hand, for analysis based on patients rather than nodes, 6 of the 31 patients with malignancy would have been missed or understaged if the diagnosis were based on samples obtained by ca-TBFB. On the other hand, 3 of 8 patients with sarcoidosis would have been missed if analysis were based only on TBNA samples. In some patients, only ca-TBFB acquired sufficient tissue for the core samples needed in clinical trials of malignancy. The sequential use of TBNA and ca-TBFB appears to be safe. The larger samples obtained from ca-TBFB increased its sensitivity to detect granulomatous disease and provided adequate specimens for clinical trials of malignancy when specimens from needle biopsies were insufficient. For thoracic surgeons and advanced bronchoscopists, we advocate ca-TBFB as an alternative to TBNA in select clinical scenarios. Copyright © 2016 The Society of Thoracic Surgeons. Published by Elsevier Inc. All rights reserved.

A Prediction Model to Help with the Assessment of Adenopathy in Lung Cancer: HAL.

PubMed

O'Connell, Oisin J; Almeida, Francisco A; Simoff, Michael J; Yarmus, Lonny; Lazarus, Ray; Young, Benjamin; Chen, Yu; Semaan, Roy; Saettele, Timothy M; Cicenia, Joseph; Bedi, Harmeet; Kliment, Corrine; Li, Liang; Sethi, Sonali; Diaz-Mendoza, Javier; Feller-Kopman, David; Song, Juhee; Gildea, Thomas; Lee, Hans; Grosu, Horiana B; Machuzak, Michael; Rodriguez-Vial, Macarena; Eapen, George A; Jimenez, Carlos A; Casal, Roberto F; Ost, David E

2017-06-15

Estimating the probability of finding N2 or N3 (prN2/3) malignant nodal disease on endobronchial ultrasound-guided transbronchial needle aspiration (EBUS-TBNA) in patients with non-small cell lung cancer (NSCLC) can facilitate the selection of subsequent management strategies. To develop a clinical prediction model for estimating the prN2/3. We used the AQuIRE (American College of Chest Physicians Quality Improvement Registry, Evaluation, and Education) registry to identify patients with NSCLC with clinical radiographic stage T1-3, N0-3, M0 disease that had EBUS-TBNA for staging. The dependent variable was the presence of N2 or N3 disease (vs. N0 or N1) as assessed by EBUS-TBNA. Univariate followed by multivariable logistic regression analysis was used to develop a parsimonious clinical prediction model to estimate prN2/3. External validation was performed using data from three other hospitals. The model derivation cohort (n = 633) had a 25% prevalence of malignant N2 or N3 disease. Younger age, central location, adenocarcinoma histology, and higher positron emission tomography-computed tomography N stage were associated with a higher prN2/3. Area under the receiver operating characteristic curve was 0.85 (95% confidence interval, 0.82-0.89), model fit was acceptable (Hosmer-Lemeshow, P = 0.62; Brier score, 0.125). We externally validated the model in 722 patients. Area under the receiver operating characteristic curve was 0.88 (95% confidence interval, 0.85-0.90). Calibration using the general calibration model method resulted in acceptable goodness of fit (Hosmer-Lemeshow test, P = 0.54; Brier score, 0.132). Our prediction rule can be used to estimate prN2/3 in patients with NSCLC. The model has the potential to facilitate clinical decision making in the staging of NSCLC.

Future changes in coastal upwelling ecosystems with global warming: The case of the California Current System.

PubMed

Xiu, Peng; Chai, Fei; Curchitser, Enrique N; Castruccio, Frederic S

2018-02-12

Coastal upwelling ecosystems are among the most productive ecosystems in the world, meaning that their response to climate change is of critical importance. Our understanding of climate change impacts on marine ecosystems is largely limited to the open ocean, mainly because coastal upwelling is poorly reproduced by current earth system models. Here, a high-resolution model is used to examine the response of nutrients and plankton dynamics to future climate change in the California Current System (CCS). The results show increased upwelling intensity associated with stronger alongshore winds in the coastal region, and enhanced upper-ocean stratification in both the CCS and open ocean. Warming of the open ocean forces isotherms downwards, where they make contact with water masses with higher nutrient concentrations, thereby enhancing the nutrient flux to the deep source waters of the CCS. Increased winds and eddy activity further facilitate upward nutrient transport to the euphotic zone. However, the plankton community exhibits a complex and nonlinear response to increased nutrient input, as the food web dynamics tend to interact differently. This analysis highlights the difficulty in understanding how the marine ecosystem responds to a future warming climate, given to range of relevant processes operating at different scales.

Isotopic and enzymatic analyses of planktonic nitrogen utilisation in the vicinity of Cape Sines (Portugal) during weak upwelling activity

NASA Astrophysics Data System (ADS)

Slawyk, Gerd; Coste, Bernard; Collos, Yves; Rodier, Martine

1997-01-01

Using measurements of 15N uptake and activities of nitrate reductase and glutamine synthetase, the utilization of nitrogenous nutrients by microplankton in the Portuguese upwelling area was investigated. During this cruise the euphotic zone of coastal waters was in most cases bisected by a nitracline forming two layers. Total inorganic nitrogen uptake rates (NH 4+ + NO 3-) in the upper mixed and nitrate-impoverished layer ranged from 0.1 to 0.8 nM h -1 and were primarily supported by regenerated (ammonium) nitrogen (62-97%), whereas they varied between 0.9 and 10.4 nM h -1 in the deep nitrate-rich layer and were mainly driven by new (nitrate) nitrogen (52-82%). Depth profiles of Chl a-specific uptake rates for ammonium and nitrate paralleled those of absolute uptake rates, i.e. values of VNH 4+Chl were highest (up to 16.1 nmol μg -1 h -1) in nitrate-poor surface waters while values of VNO 3-Chl were maximum (up to 8.4 nmol μg -1 h -1)within the nitracline. This latter vertical ordering of planktonic nitrogen nutrition was consistent with an aged upwelling situation. However, applying several indices of cell metabolism and nutritional status, such as 15N uptake/enzyme activity, surge uptake internally controlled uptake, and V maxChl/K t ratios, we were able to demonstrate that the phytoplankton assemblages inhabiting the nutrient-impoverished upper layer still bore the signature of physically mediated nitrogen (nitrate) supply generated by active upwelling that had occurred during the week before our visit to the area. This signature was the most evident in samples from the station furthest inshore and faded with distance from shore as a result of the deepening of the nitrate isopleths (weakening of upwelling activity), which showed the same offshore trend. The appearance of nitrate-rich waters at the surface, after a strong pulse of upwelling favourable winds just before the end of the cruise, led to a five-fold increase in average (over the euphotic zone) absolute and Chl a-specific nitrate uptake rates (10.4 nM h -1, 7.5 nmol μ -1 h -1) compared to the mean rates during weak upwelling (1.7 nM h -1, 1.5 nmol μ -1 h -1). From a comparison with the neighbouring Moroccan upwelling, it is assumed that new production in the Portuguese upwelling averages 50 nM h -1. Thus, this upwelling would rank with the northwest African upwelling system off Cape Blanc or with the Californian upwelling at Point Conception for the capacity of new production, but seems to be much less efficient (seven-fold) than the highly permanent Peru upwelling.

Bathymetric analysis of in-water upwelling-radiance data

NASA Astrophysics Data System (ADS)

Fay, Temple H.; Miller, H. V.; Clark, R. K.

1990-09-01

In June 1988, the Naval Ocean Research and Development Activity (NORDA) collected some "in-water" data using its Towed Underwater Pumping System (TUPS) in the near-shore waters off St. Andrews State Park, Shell Island, Florida. These in situ data include latitude; longitude; depth in meters; narrow-band upwelling at 465 nm, 507 nm, and 532 nm; broad-band downwelling collected at the surface; temperature; salinity; atid transmissivity. In this paper, we investigate the relationship between depth and the normalized upwelling irradiance (upwelling divided by downwelling) in the three bands. Algorithms used to calculate water depth from remotely sensed airborne and satellite multispectral data are applied to the TUPS data and results compared. The TEJPS data have the advantage over most aircraft- and satellite-collected data because they were collected over an essentially uniform bottom type (smooth sandy bottom with steady slope) and have no atmospheric contamination. A new algorithm for depth calculation is proposed.

Hot-spots of primary productivity: An Alternative interpretation to Conventional upwelling models

NASA Astrophysics Data System (ADS)

van Ruth, Paul D.; Ganf, George G.; Ward, Tim M.

2010-12-01

The eastern Great Australian Bight (EGAB) forms part of the Southern and Indian Oceans and is an area of high ecological and economic importance. Although it supports a commercial fishery, quantitative estimates of the primary productivity underlying this industry are open to debate. Estimates range from <100 mg C m -2 day -1 to > 500 mg C m -2 day -1. Part of this variation may be due to the unique upwelling circulation of shelf waters in summer/autumn (November-April), which shares some similarities with highly productive eastern boundary current upwelling systems, but differs due to the influence of a northern boundary current, the Flinders current, and a wide continental shelf. This study examines spatial variations in primary productivity in the EGAB during the upwelling seasons of 2005 and 2006. Daily integral productivity calculated using the vertically generalised production model (VGPM) showed a high degree of spatial variation. Productivity was low (<800 mg C m -2 day -1) in offshore central and western regions of the EGAB. High productivities (1600-3900 mg C m -2 day -1) were restricted to hotspots in the east that were influenced by the upwelled water mass. There was a strong correlation between the depth of the euphotic zone and the depth of the mixed layer that suggested that ˜50% of the euphotic zone lay below the mixed layer depth. As a result, high rates of primary productivity did not require upwelled water to reach the surface. A significant proportion of total productivity in the euphotic zone (57% in 2005 and 65% in 2006) occurred in the upwelled water mass below the surface mixed layer. This result has implications for daily integral productivities modelled with the VGPM, which uses surface measures of phytoplankton biomass to calculate productivity. Macro-nutrient concentrations could not be used to explain the difference in the low and high productivities (silica > 1 μmol L -1, nitrate/nitrite > 0.4 μmol L -1, phosphate > 0.1 μmol L -1). Mixing patterns or micro-nutrient concentrations are possible explanations for spatial variations in primary productivity in the EGAB. On a global scale, daily rates of primary productivity of the EGAB lie between the highly productive eastern boundary current upwelling systems, and less productive coastal regions of western and south eastern Australia, and the oligotrophic ocean. However, daily productivity rates in the upwelling hotspots of the EGAB rival productivities in Benguela and Humboldt currents.

Spatial and temporal variability in coccolithophore abundance and distribution in the NW Iberian coastal upwelling system

NASA Astrophysics Data System (ADS)

Ausín, Blanca; Zúñiga, Diana; Flores, Jose A.; Cavaleiro, Catarina; Froján, María; Villacieros-Robineau, Nicolás; Alonso-Pérez, Fernando; Arbones, Belén; Santos, Celia; de la Granda, Francisco; Castro, Carmen G.; Abrantes, Fátima; Eglinton, Timothy I.; Salgueiro, Emilia

2018-01-01

A systematic investigation of the spatial and temporal variability in coccolithophore abundance and distribution through the water column of the NW Iberian coastal upwelling system was performed. From July 2011 to June 2012, monthly sampling at various water depths was conducted at two parallel stations located at 42° N. Total coccosphere abundance was higher at the outer-shelf station, where warmer, nutrient-depleted waters favoured coccolithophore rather than phytoplanktonic diatom blooms, which are known to dominate the inner-shelf location. In seasonal terms, higher coccosphere and coccolith abundances were registered at both stations during upwelling seasons, coinciding with high irradiance levels. This was typically in conjunction with stratified, nutrient-poor conditions (i.e. relaxing upwelling conditions). However, it also occurred during some upwelling events of colder, nutrient-rich subsurface waters onto the continental shelf. Minimum abundances were generally found during downwelling periods, with unexpectedly high coccolith abundance registered in subsurface waters at the inner-shelf station. This finding can only be explained if strong storms during these downwelling periods favoured resuspension processes, thus remobilizing deposited coccoliths from surface sediments, and hence hampering the identification of autochthonous coccolithophore community structure. At both locations, the major coccolithophore assemblages were dominated by Emiliania huxleyi, small Gephyrocapsa group, Gephyrocapsa oceanica, Florisphaera profunda, Syracosphaera spp., Coronosphaera mediterranea, and Calcidiscus leptoporus. Ecological preferences of the different taxa were assessed by exploring the relationships between environmental conditions and temporal and vertical variability in coccosphere abundance. These findings provide relevant information for the use of fossil coccolith assemblages in marine sediment records, in order to infer past environmental conditions, of particular importance for Paleoceanography. Both E. huxleyi and the small Gephyrocapsa group are proposed as proxies for the upwelling regime with a distinct affinity for different stages of the upwelling event: E. huxleyi was associated with warmer, nutrient-poor and more stable water column (i.e. upwelling relaxation stage) while the small Gephyrocapsa group was linked to colder waters and higher nutrient availability (i.e. early stages of the upwelling event), similarly to G. oceanica. Conversely, F. profunda is suggested as a proxy for the downwelling regime and low-productivity conditions. The assemblage composed by Syracosphaera pulchra, Coronosphaera mediterranea, and Rhabdosphaera clavigera may be a useful indicator of the presence of subtropical waters conveyed northward by the Iberian Poleward Current. Finally, C. leptoporus is proposed as an indicator of warmer, saltier, and oligotrophic waters during the downwelling/winter regime.

DOE Office of Scientific and Technical Information (OSTI.GOV)

Whitledge, T E

The regeneration of nitrogen is an important process that increases the efficiency of the upwelling ecosystem by enlarging their spatial scales. Ammonium regeneration was considered to contribute 42 to 72 percent of phytoplankton nitrogen requirements in the northwest Africa, Peru, and Baja California upwelling systems. Zooplankton are responsible for the largest portion of regenerated nitrogen; however, fish and benthic sediments may be nearly as large. Comparisons of the importance of ammonium regeneration in upwelling areas with coastal and open ocean regions indicate that the percentage contributions are similar. Future nutrient regeneration studies are needed to assess the recycling of benthicmore » sediments, microzooplankton, gelatinous zooplankton, demersal fish, bacterioplankton, and mollusks.« less

Progress on upwelling studies in the China seas

NASA Astrophysics Data System (ADS)

Hu, Jianyu; Wang, Xiao Hua

2016-09-01

East Asian marginal seas surrounding China exhibit rich ocean upwelling, mostly in response to the southwesterly summer monsoon. Upwelling in the China seas, namely, the South China Sea, the Taiwan Strait, the East China Sea, the Yellow Sea, and the Bohai Sea, has become increasingly important because the potential changes in the upwelling may have dramatic ecosystem, socioeconomic, and climate impacts. This paper reviews the progress of upwelling studies in the China seas since the year 2000, by presenting the principal characteristics and new understanding of 12 major upwelling regions in the China seas. Upwelling exhibits long-term variability at intraseasonal to multidecadal scales as well as short-term variability frequently caused by tropical cyclones. It is also associated with the El Niño-Southern Oscillation, local environmental variation, and biogeochemical factors. The coastal upwelling around Hainan Island and the upwelling or cold dome northeast of Taiwan Island are specifically highlighted because they have attracted great interest for decades. This paper summarizes upwelling mechanisms in terms of wind, topography, tide, stratification, and background flow, with applications mostly to the China seas. Finally, we propose some topics for future upwelling research, i.e., potential intensification of coastal upwelling under global climate change, downwelling, intrusion of upwelling into coastal embayments, and the influence of upwelling on fishery and biogeochemical processes.

Relative contributions of local wind and topography to the coastal upwelling intensity in the northern South China Sea

NASA Astrophysics Data System (ADS)

Wang, Dongxiao; Shu, Yeqiang; Xue, Huijie; Hu, Jianyu; Chen, Ju; Zhuang, Wei; Zu, TingTing; Xu, Jindian

2014-04-01

Topographically induced upwelling caused by the interaction between large-scale currents and topography was observed during four cruises in the northern South China Sea (NSCS) when the upwelling favorable wind retreated. Using a high-resolution version of the Princeton Ocean Model, we investigate relative contributions of local wind and topography to the upwelling intensity in the NSCS. The results show that the topographically induced upwelling is sensitive to alongshore large-scale currents, which have an important contribution to the upwelling intensity. The topographically induced upwelling is comparable with the wind-driven upwelling at surface and has a stronger contribution to the upwelling intensity than the local wind does at bottom in the near-shore shelf region. The widened shelf to the southwest of Shanwei and west of the Taiwan Banks intensifies the bottom friction, especially off Shantou, which is a key factor for topographically induced upwelling in terms of bottom Ekman transport and Ekman pumping. The local upwelling favorable wind enhances the bottom friction as well as net onshore transport along the 50 m isobath, whereas it has less influence along the 30 m isobath. This implies the local wind is more important in upwelling intensity in the offshore region than in the nearshore region. The contribution of local upwelling favorable wind on upwelling intensity is comparable with that of topography along the 50 m isobath. The effects of local upwelling favorable wind on upwelling intensity are twofold: on one hand, the wind transports surface warm water offshore, and as a compensation of mass the bottom current transports cold water onshore; on the other hand, the wind enhances the coastal current, and the bottom friction in turn increases the topographically induced upwelling intensity.

Variability in bacterial community structure during upwelling in the coastal ocean

USGS Publications Warehouse

Kerkhof, L.J.; Voytek, M.A.; Sherrell, Robert M.; Millie, D.; Schofield, O.

1999-01-01

Over the last 30 years, investigations at the community level of marine bacteria and phytoplankton populations suggest they are tightly coupled. However, traditional oceanographic approaches cannot assess whether associations between specific bacteria and phytoplankton exist. Recently, molecular based approaches have been implemented to characterize specific members of different marine bacterial communities. Yet, few molecular-based studies have examined coastal upwelling situations. This is important since upwelling systems provide a unique opportunity for analyzing the association between specific bacteria and specific phytoplankton in the ocean. It is widely believed that upwelling can lead to changes in phytoplankton populations (blooms). Thus, if specific associations exist, we would expect to observe changes in the bacterial population triggered by the bloom. In this paper, we present preliminary data from coastal waters off New Jersey that confirm a shift in bacterial communities during a 1995 upwelling event recorded at a long-term earth observatory (LEO-15) in the Mid-Atlantic Bight. Using PCR amplification and cloning, specific bacterial 16S ribosomal RNA sequences were found which were present in upwelling samples during a phytoplankton bloom, but were not detected in non-bloom samples (surface seawater, offshore sites or sediment samples) collected at the same time or in the same area. These findings are consistent with the notion of specific associations between bacteria and phytoplankton in the ocean. However, further examination of episodic events, such as coastal upwelling, are needed to confirm the existence of specific associations. Additionally, experiments need to be performed to elucidate the mechanisms leading to the specific linkages between a group of bacteria and a group of phytoplankton.

The Arabian Sea as a high-nutrient, low-chlorophyll region during the late Southwest Monsoon

NASA Astrophysics Data System (ADS)

Naqvi, S. W. A.; Moffett, J. W.; Gauns, M. U.; Narvekar, P. V.; Pratihary, A. K.; Naik, H.; Shenoy, D. M.; Jayakumar, D. A.; Goepfert, T. J.; Patra, P. K.; Al-Azri, A.; Ahmed, S. I.

2010-07-01

Extensive observations were made during the late Southwest Monsoon of 2004 over the Indian and Omani shelves, and along a transect that extended from the southern coast of Oman to the central west coast of India, tracking the southern leg of the US JGOFS expedition (1994-1995) in the west. The data are used, in conjunction with satellite-derived data, to investigate long-term trends in chlorophyll and sea surface temperature, indicators of upwelling intensity, and to understand factors that control primary production (PP) in the Arabian Sea, focussing on the role of iron. Our results do not support an intensification of upwelling in the western Arabian Sea, reported to have been caused by the decline in the winter/spring Eurasian snow cover since 1997. We also noticed, for the first time, an unexpected development of high-nutrient, low-chlorophyll condition off the southern Omani coast. This feature, coupled with other characteristics of the system, such as a narrow shelf and relatively low iron concentrations in surface waters, suggest a close similarity between the Omani upwelling system and the Peruvian and California upwelling systems, where PP is limited by iron. Iron limitation of PP may complicate simple relationship between upwelling and PP assumed by previous workers, and contribute to the anomalous offshore occurrence of the most severe oxygen (O2) depletion in the region. Over the much wider Indian shelf, which experiences large-scale bottom water O2-depletion in summer, adequate iron supply from reducing bottom-waters and sediments seems to support moderately high PP; however, such production is restricted to the thin, oxygenated surface layer, probably because of the unsuitability of the O2-depleted environment for the growth of oxygenic photosynthesizers.

Phytoplankton biomass and microbial abundances during the spring upwelling season in the coastal area off Concepción, central-southern Chile: Variability around a time series station

NASA Astrophysics Data System (ADS)

Morales, Carmen E.; Anabalón, Valeria

2012-01-01

In the coastal system off Concepción, time series observations at a fixed station (St. 18) have shown strong seasonal changes in the oceanographic environment of the upper layer (<35 m depth), accompanied by large increases in phytoplankton biomass during the spring-summer upwelling season. These blooms, dominated by microplanktonic diatoms, have usually overshadowed the relevance of the smaller microbial components during upwelling. This study focuses on the variability of oceanographic conditions and their association with the structure of the planktonic community (size fractionated chlorophyll-a and microbial abundances) in the upper layer during the upwelling season, examining the extent to which St. 18 is representative of the coastal system off Concepción during springtime. For this purpose, data from three consecutive springs (2004, 2005, 2006) were compared, which included cruises for all years (8 stations around St. 18) as well as monthly sampling at St. 18. Most of the spatial (submesoscale) variability in chlorophyll-a and the microbial components was not significant, but data dispersion around mean values was high. Water column structure (temperature and salinity) in the upper layer explained a significant fraction (25-65%) of the spatial variability in most of the planktonic components; their responses to oceanographic variability were linear in some cases and non-linear in others. For the most part, St. 18 appears to adequately represent mean oceanographic conditions and the structure of planktonic communities in the coastal waters off Concepción during springtime, however spatial variability needs to be taken into account in the interpretations of temporal changes at this fixed station as well as in assessments of carbon flow within, and exportation processes from, this upwelling system.

Ichthyoplankton transport from the African coast to the Canary Islands

NASA Astrophysics Data System (ADS)

Brochier, Timothée; Mason, Evan; Moyano, Marta; Berraho, Amina; Colas, Francois; Sangrà, Pablo; Hernández-León, Santiago; Ettahiri, Omar; Lett, Christophe

2011-08-01

The Canary Upwelling System (CUS), a major eastern boundary upwelling system, sustains large cross-border fisheries of small pelagic fish, which poses the question of stock connectivity. Studies suggest that ichthyoplankton transport from the northwest African coast to the Canary Islands (CI) is facilitated by coastal-upwelling associated filaments. Here we analyze connections between larval supply to the CI and sardine and anchovy populations that spawn over the continental shelf. For both species, ichthyoplankton observations (1) at the shelf and (2) near the island of Gran Canaria (GC) are used. Predictions of ichthyoplankton transport to GC are obtained from the Ichthyop Lagrangian transport model, which is forced by a high-resolution hydrodynamic model (ROMS) that reproduces the regional circulation. Results show that upwelling filaments play an important role in the transport of larvae to GC. However, (1) filaments are not the only mechanism, and (2) filament presence does not necessarily imply larval transport. Anchovy and sardine larval presence at GC appears to be independent of the respective adult spawning seasonality. Combining of observed and modeled data does not succeed in reproducing the observed larval patterns at GC. Various hypotheses are proposed to explain this discrepancy in larval transport to GC.

Small pelagic fish reproductive strategies in upwelling systems: A natal homing evolutionary model to study environmental constraints

NASA Astrophysics Data System (ADS)

Brochier, T.; Colas, F.; Lett, C.; Echevin, V.; Cubillos, L. A.; Tam, J.; Chlaida, M.; Mullon, C.; Fréon, P.

2009-12-01

Although little is known about the individual-level mechanisms that influence small pelagic fish species’ reproductive strategy, Mullon et al. [Mullon, C., Cury, P., Penven, P., 2002. Evolutionary individual-based model for the recruitment of anchovy ( Engraulis capensis) in the southern Benguela. Canadian Journal of Fisheries and Aquatic Sciences 59, 910-922] showed that the observed anchovy spawning patterns in the southern Benguela Current system off South Africa could be accurately reproduced by simulating a natal homing reproductive strategy, i.e. individuals spawning at their natal date and place. Here we used a similar method, i.e., an individual-based model of the natal homing reproductive strategy, and applied it to other upwelling systems: the northern Humboldt Current system off Peru, the southern Humboldt Current system off Chile and the central Canary Current system off Morocco. We investigated the spatial (horizontal and vertical) and seasonal spawning patterns that emerged after applying different environmental constraints in the model, and compared these to observed spawning patterns of sardine and anchovy in their respective systems. The selective environmental constraints tested were: (1) lethal temperature; (2) retention over the continental shelf; and (3) avoidance of dispersive structures. Simulated horizontal spatial patterns and seasonal patterns compared reasonably well with field data, but vertical patterns in most cases did not. Similarly to what was found for the southern Benguela, temperature was a determinant constraint in the southern Humboldt. The shelf retention constraint led to selection of a particular spawning season during the period of minimum upwelling in all three of the upwelling regions considered, and to spatial patterns that matched observed anchovy spawning off Chile and sardine spawning off Morocco. The third constraint, avoidance of dispersive structures, led to the emergence of a spawning season during the period of maximum upwelling off Chile and Morocco, but not in Peru. The most accurate representation of observed spatio-temporal spawning patterns off Peru was achieved through a combination of shelf retention and non-dispersion constraints.

Response of the Benguela upwelling systems to spatial variations in the wind stress

NASA Astrophysics Data System (ADS)

Fennel, Wolfgang; Junker, Tim; Schmidt, Martin; Mohrholz, Volker

2012-08-01

In this paper we combine field observations, numerical modeling and an idealized analytical theory to study some features of the Benguela upwelling system. The current system can be established through a combination of observations and realistic simulations with an advanced numerical model. The poleward undercurrent below the equator-ward coastal jet is often found as a countercurrent that reaches the sea surface seaward of the coastal jet. The coastal band of cold upwelled water appears to broaden from south to north and at the northern edge of the wind band an offshore flow is often detected, which deflects the coastal Angola current to the west. These features can be explained and understood with an idealized analytical model forced by a spatially variable wind. A crucial role is played by the wind stress curl, which shapes the oceanic response through Ekman-pumping. The interplay of the curl driven effects and the coastal Ekman upwelling together with the coastal jet, Kelvin waves, and the undercurrent is the key to understand the formation of the three-dimensional circulation patterns in the Benguela system. While the numerical model is based on the full set of primitive equations, realistic topography and forcing, the analytic model uses a linear, flat-bottomed f-plane ocean, where the coast is a straight wall and the forcing is represented by an alongshore band of dome-shaped wind stress. Although the analytical model is highly idealized it is very useful to grasp the basic mechanisms leading to the response patterns.

Atmosphere-ocean feedbacks in a coastal upwelling system

NASA Astrophysics Data System (ADS)

Alves, J. M. R.; Peliz, A.; Caldeira, R. M. A.; Miranda, P. M. A.

2018-03-01

The COAWST (Coupled Ocean-Atmosphere-Wave-Sediment Transport) modelling system is used in different configurations to simulate the Iberian upwelling during the 2012 summer, aiming to assess the atmosphere-ocean feedbacks in the upwelling dynamics. When model results are compared with satellite measurements and in-situ data, two-way coupling is found to have a moderate impact in data-model statistics. A significant reinforcement of atmosphere-ocean coupling coefficients is, however, observed in the two-way coupled run, and in the WRF and ROMS runs forced by previously simulated SST and wind fields, respectively. The increasing in the coupling coefficient is associated with slight, but potentially important changes in the low-level coastal jet in the atmospheric marine boundary layer. While these results do not imply the need for fully coupled simulations in many applications, they show that in seasonal numerical studies such simulations do not degrade the overall model performance, and contribute to produce better dynamical fields.

Oceanographic and climatic evolution of the southeastern subtropical Atlantic over the last 3.5 Ma

NASA Astrophysics Data System (ADS)

Petrick, Benjamin; McClymont, Erin L.; Littler, Kate; Rosell-Melé, Antoni; Clarkson, Matthew O.; Maslin, Mark; Röhl, Ursula; Shevenell, Amelia E.; Pancost, Richard D.

2018-06-01

The southeast Atlantic Ocean is dominated by two major oceanic systems: the Benguela Upwelling System, one of the world's most productive coastal upwelling cells and the Agulhas Leakage, which is important for transferring warm salty water from the Indian Ocean to the Atlantic Ocean. Here, we present a multi-proxy record of marine sediments from ODP Site 1087. We reconstruct sea surface temperatures (U37K‧ and TEX86 indices), marine primary productivity (total chlorin and alkenone mass accumulation rates), and terrestrial inputs derived from southern Africa (Ti/Al and Ca/Ti via XRF scanning) to understand the evolution of the Southeast Atlantic Ocean since the late Pliocene. In the late Pliocene and early Pleistocene, ODP Site 1087 was situated within the Benguela Upwelling System, which was displaced southwards relative to present. We recognize a series of events in the proxy records at 3.3, 3.0, 2.2, 1.5, 0.9 and 0.6 Ma, which are interpreted to reflect a combination of changes in the location of major global wind and oceanic systems and local variations in the strength and/or position of the winds, which influence nutrient availability. Although there is a temporary SST cooling observed around the initiation of Northern Hemisphere glaciation (iNHG), proxy records from ODP Site 1087 show no clear climatic transition around 2.7 Ma but instead most of the changes occur before this time. This observation is significant because it has been previously suggested that there should be a change in the location and/or strength of upwelling associated with this climate transition. Rather, the main shifts at ODP Site 1087 occur at ca. 0.9 Ma and 0.6 Ma, associated with the early mid-Pleistocene transition (EMPT), with a clear loss of the previous upwelling-dominated regime. This observation raises the possibility that reorganisation of southeast Atlantic Ocean circulation towards modern conditions was tightly linked to the EMPT, but not to earlier climate transitions.

Temporal variability and phylogenetic characterization of planktonic anammox bacteria in the coastal upwelling ecosystem off central Chile

NASA Astrophysics Data System (ADS)

Galán, Alexander; Molina, Verónica; Belmar, Lucy; Ulloa, Osvaldo

2012-01-01

The phylogenetic affiliation and temporal variability in the abundance of planktonic anammox bacteria were studied at a time-series station above the continental shelf off central Chile (∼36°S; bottom depth 93 m), a wind-driven, seasonal upwelling area, between August 2006 and April 2008. The study was carried out by cloning and sequencing the 16S rRNA gene and by using catalyzed reporter deposition-fluorescence in situ hybridization (CARD-FISH). Our results showed the presence of a single anammox bacteria-like ribotype during both upwelling and non-upwelling seasons, which was phylogenetically associated with a recently described oxygen-minimum-zone subcluster within the Candidatus Scalindua clade. Moreover, clear differences were observed in the temporal and vertical distribution of anammox cells. During the upwelling season (austral spring-summer), relatively high abundances (∼5500 cells mL -1) and large cells (0.8 μm 3-75.7 fg C cell -1) were found below 20 m depth. In contrast, during the non-upwelling season (austral fall-winter), lower abundances (∼600 cells mL -1) and smaller cells (0.1 μm 3-22.8 fg C cell -1) were found, predominantly associated with the bottom layer. Overall, our results indicate that the abundance and vertical distribution of anammox planktonic assemblages are related to the occurrence of seasonal, wind-driven, coastal upwelling, which in turn appears to offer favorable conditions for the development of these microorganisms. The dominance of a unique anammox bacteria-like ribotype could be related to the high environmental variability observed in the system, which prevents the establishment of other anammox lineages.

Seasonal and annual variability of coastal sulphur plumes in the northern Benguela upwelling system.

PubMed

Ohde, Thomas; Dadou, Isabelle

2018-01-01

We investigated the seasonal and annual variability of surface sulphur plumes in the northern Benguela upwelling system off Namibia because of their significant impacts on the marine ecosystem, fishing industry, aquaculture farming and tourism due to their toxic properties. We identified the sulphur plumes in ocean colour satellite data of the medium resolution imaging spectrometer (MERIS) for the 2002-2012 time period using the differences in the spectral properties of Namibian Benguela optical water types. The sulphur events have a strong seasonal cycle with pronounced main and off-seasons forced by local and remote-driven processes. The main peak season is in late austral summer and early austral autumn at the beginning of the annual upwelling cycle caused by increasing equatorwards alongshore winds. The sulphur plume activity is high between February and April during the seasonal oxygen minimum associated with the seasonal reduction of cross-shore ventilation of the bottom waters, the seasonal southernmost position of the Angola Benguela Frontal Zone, the seasonal maximum of water mass fractions of South Atlantic and Angola Gyre Central Waters as well as the seasonal arrival of the downwelling coastal trapped waves. The off-season is in austral spring and early austral summer during increased upwelling intensity and enhanced oxygen supply. The annual variability of sulphur events is characterized by very high activities in years 2004, 2005 and 2010 interrupted by periods of lower activity in years 2002 to 2003, 2006 to 2009 and 2011 to 2012. This result can be explained by the relative contributions or adding effects of local and remote-driven forces (from the equatorial area). The probability for the occurrence of sulphur plumes is enhanced in years with a lower annual mean of upwelling intensity, decreased oxygen supply associated with decreased lateral ventilation of bottom waters, more southern position of the Angola Benguela Frontal Zone, increased mass fraction of South Atlantic Central Water and stronger downwelling coastal trapped waves. Understanding of the variability and forcing processes of the toxic sulphur events will help in the future to monitor and forecast them as well as to manage their social and economic consequences in the northern Benguela upwelling system off Namibia.

A Novel Differentiation Therapy Approach to Reduce the Metastatic Potential of Basal, Highly Metastatic, Triple-Negative Breast Cancers

DTIC Science & Technology

2011-05-01

task 1 b) GATA3 was shown to directly modulate expression of genes regulating the cell cycle (Pei et al., 2009; Molenaar et al., 2010) and GATA3...downstream target of GATA3 and restrains mammary luminal progenitor cell proliferation and tumorigenesis. Cancer Ce/l15:389-401. Molenaar JJ, Ebus

Use of Electromagnetic Navigational Transthoracic Needle Aspiration (E-TTNA) for Sampling of Lung Nodules.

PubMed

Arias, Sixto; Lee, Hans; Semaan, Roy; Frimpong, Bernice; Ortiz, Ricardo; Feller-Kopman, David; Oakjones-Burgess, Karen; Yarmus, Lonny

2015-05-23

Lung nodule evaluation represents a clinical challenge especially in patients with intermediate risk for malignancy. Multiple technologies are presently available to sample nodules for pathological diagnosis. Those technologies can be divided into bronchoscopic and non-bronchoscopic interventions. Electromagnetic navigational bronchoscopy is being extensively used for the endobronchial approach to peripheral lung nodules but has been hindered by anatomic challenges resulting in a 70% diagnostic yield. Electromagnetic navigational guided transthoracic needle lung biopsy is novel non-bronchoscopic method that uses a percutaneous electromagnetic tip tracked needle to obtain core biopsy specimens. Electromagnetic navigational transthoracic needle aspiration complements bronchoscopic techniques potentially allowing the provider to maximize the diagnostic yield during one single procedure. This article describes a novel integrated diagnostic approach to pulmonary lung nodules. We propose the use of endobronchial ultrasound transbronchial needle aspiration (EBUS-TBNA) for mediastinal staging; radial EBUS, navigational bronchoscopy and E-TTNA during one single procedure to maximize diagnostic yield and minimize the number of invasive procedures needed to obtain a diagnosis. This manuscript describes in detail how the navigation transthoracic procedure is performed. Additional clinical studies are needed to determine the clinical utility of this novel technology.

Oceanographic, Air-sea Interaction, and Environmental Aspects of Artificial Upwelling Produced by Wave-Inertia Pumps for Potential Hurricane Intensity Mitigation

NASA Astrophysics Data System (ADS)

Soloviev, A.; Dean, C.

2017-12-01

The artificial upwelling system consisting of the wave-inertia pumps driven by surface waves can produce flow of cold deep water to the surface. One of the recently proposed potential applications of the artificial upwelling system is the hurricane intensity mitigation. Even relatively small reduction of intensity may provide significant benefits. The ocean heat content (OHC) is the "fuel" for hurricanes. The OHC can be reduced by mixing of the surface layer with the cold water produced by wave-inertia pumps. Implementation of this system for hurricane mitigation has several oceanographic and air-sea interaction aspects. The cold water brought to the surface from a deeper layer has higher density than the surface water and, therefore, tends to sink back down. The mixing of the cold water produced by artificial upwelling depends on environmental conditions such as stratification, regional ocean circulation, and vertical shear. Another aspect is that as the sea surface temperature drops below the air temperature, the stable stratification develops in the atmospheric boundary layer. The stable atmospheric stratification suppresses sensible and latent heat air-sea fluxes and reduces the net longwave irradiance from the sea surface. As a result, the artificial upwelling may start increasing the OHC (though still reducing the sea surface temperature). In this work, the fate of the cold water in the stratified environment with vertical shear has been studied using computational fluid dynamics (CFD) tools. A 3D large eddy simulation model is initialized with observational temperature, salinity, and current velocity data from a sample location in the Straits of Florida. A periodic boundary condition is set along the direction of the current, which allows us to simulate infinite fetch. The model results indicate that the cold water brought to the sea surface by a wave-inertia pump forms a convective jet. This jet plunges into the upper ocean mixed layer and penetrates the thermocline. On the way down, the jet partially mixes with the surrounding water reducing the temperature of the upper ocean. The OHC thus can either reduce or increase, depending on the wave-inertia pump parameters. Based on the model results, we discuss feasibility of the implementation of the artificial upwelling system for hurricane intensity mitigation.

Numerical Study on the influence of Kuroshio Intrusion on Coastal upwelling off Coasts of China

NASA Astrophysics Data System (ADS)

Dezhou, Y.; Yin, B.

2016-02-01

Anomalous distribution of sea surface temperature (SST) has been observed off coasts of Zhejiang province, China in summer 2009 and 2012, respectively, where algal blooms are increasingly reported. Then, the rotated empirical orthogonal functions analysis has been employed to examine the 31 summertime SST fields. A distinct SST mode is identified in this upwelling area, and its principal components show a colder phase in 2009 and a warmer phase in 2012. At the same time, cruise data show colder and more saline bottom water in this upwelling area in summer 2009 relative to that in summer 2012, which implies a more nearshore Kuroshio branch current (NKBC) in summer 2009 and a more offshore NKBC in summer 2012. On the basis of regional ocean model system (ROMS), 20-year hindcast run has been successfully carried out. Model results faithfully reproduce the anomalous SST in summer 2009 and 2012. On the basis of the observational and modeled evidences, we propose that the anomalously cold or warm coastal upwelling is mainly attributed to the extremely shoreward or seaward shift of the NKBC. In other words, the more shoreward the NKBC shift, the colder the surface upwelling water is. In contrast, the more seaward the NKBC shift, the warmer the surface upwelling water is. Moreover, this paper shows a good example that the coastal environment may be profoundly influenced by the remote variation of Kuroshio east of Taiwan, which is highly correlated to the sea surface height east of Taiwan.

Coastal upwelling south of Madagascar: Temporal and spatial variability

NASA Astrophysics Data System (ADS)

Ramanantsoa, Juliano D.; Krug, M.; Penven, P.; Rouault, M.; Gula, J.

2018-02-01

Madagascar's southern coastal marine zone is a region of high biological productivity which supports a wide range of marine ecosystems, including fisheries. This high biological productivity is attributed to coastal upwelling. This paper provides new insights on the structure, variability and drivers of the coastal upwelling south of Madagascar. Satellite remote sensing is used to characterize the spatial extent and strength of the coastal upwelling. A front detection algorithm is applied to thirteen years of Multi-scale Ultra-high Resolution (MUR) Sea Surface Temperatures (SST) and an upwelling index is calculated. The influence of winds and ocean currents as drivers of the upwelling is investigated using satellite, in-situ observations, and a numerical model. Results reveal the presence of two well-defined upwelling cells. The first cell (Core 1) is located in the southeastern corner of Madagascar, and the second cell (Core 2) is west of the southern tip of Madagascar. These two cores are characterized by different seasonal variability, different intensities, different upwelled water mass origins, and distinct forcing mechanisms. Core 1 is associated with a dynamical upwelling forced by the detachment of the East Madagascar Current (EMC), which is reinforced by upwelling favourable winds. Core 2 appears to be primarily forced by upwelling favourable winds, but is also influenced by a poleward eastern boundary flow coming from the Mozambique Channel. The intrusion of Mozambique Channel warm waters could result in an asynchronicity in seasonality between upwelling surface signature and upwelling favourables winds.

Fungal parasites infect marine diatoms in the upwelling ecosystem of the Humboldt current system off central Chile.

PubMed

Gutiérrez, Marcelo H; Jara, Ana M; Pantoja, Silvio

2016-05-01

This is the first report of fungal parasitism of diatoms in a highly productive coastal upwelling ecosystem, based on a year-round time series of diatom and parasitic Chytridiomycota abundance in the Humboldt Current System off Chile (36°30.80'S-73°07.70'W). Our results show co-variation in the presence of Skeletonema, Thalassiosira and Chaetoceros diatoms with attached and detached chytrid sporangia. High abundance of attached sporangia was observed during the austral spring, coinciding with a predominance of Thalassiosira and Skeletonema under active upwelling conditions. Towards the end of austral spring, a decreasing proportion of attached sporangia was accompanied by a decline in abundance of Skeletonema and Thalassiosira and the predominance of Chaetoceros, suggesting specificity and host density dependence of chytrid infection. The new findings on fungal parasitism of diatoms provide further support for the inclusion of Fungi in the current model of the role played by the marine microbial community in the coastal ocean. We propose a conceptual model where Fungi contribute to controlling the dynamics of phytoplankton populations, as well as the release of organic matter and the transfer of organic carbon through the pelagic trophic web in coastal upwelling ecosystems. © 2016 Society for Applied Microbiology and John Wiley & Sons Ltd.

Analysis of longwave radiation for the Earth-atmosphere system

NASA Technical Reports Server (NTRS)

Tiwari, S. N.; Venuru, C. S.; Subramanian, S. V.

1983-01-01

Accurate radiative transfer models are used to determine the upwelling atmospheric radiance and net radiative flux in the entire longwave spectral range. The validity of the quasi-random band model is established by comparing the results of this model with those of line-by-line formulations and with available theoretical and experimental results. Existing radiative transfer models and computer codes are modified to include various surface and atmospheric effects (surface reflection, nonequilibrium radiation, and cloud effects). The program is used to evaluate the radiative flux in clear atmosphere, provide sensitivity analysis of upwelling radiance in the presence of clouds, and determine the effects of various climatological parameters on the upwelling radiation and anisotropic function. Homogeneous and nonhomogeneous gas emissivities can also be evaluated under different conditions.

Evidence of bottom-up limitations in nearshore marine systems based on otolith proxies of fish growth

USGS Publications Warehouse

von Biela, Vanessa R.; Kruse, Gordon H.; Mueter, Franz J.; Black, Bryan A.; Douglas, David C.; Helser, Thomas E.; Zimmerman, Christian E.

2015-01-01

Fish otolith growth increments were used as indices of annual production at nine nearshore sites within the Alaska Coastal Current (downwelling region) and California Current (upwelling region) systems (~36–60°N). Black rockfish (Sebastes melanops) and kelp greenling (Hexagrammos decagrammus) were identified as useful indicators in pelagic and benthic nearshore food webs, respectively. To examine the support for bottom-up limitations, common oceanographic indices of production [sea surface temperature (SST), upwelling, and chlorophyll-a concentration] during summer (April–September) were compared to spatial and temporal differences in fish growth using linear mixed models. The relationship between pelagic black rockfish growth and SST was positive in the cooler Alaska Coastal Current and negative in the warmer California Current. These contrasting growth responses to SST among current systems are consistent with the optimal stability window hypothesis in which pelagic production is maximized at intermediate levels of water column stability. Increased growth rates of black rockfish were associated with higher chlorophyll concentrations in the California Current only, but black rockfish growth was unrelated to the upwelling index in either current system. Benthic kelp greenling growth rates were positively associated with warmer temperatures and relaxation of downwelling (upwelling index near zero) in the Alaska Coastal Current, while none of the oceanographic indices were related to their growth in the California Current. Overall, our results are consistent with bottom-up forcing of nearshore marine ecosystems—light and nutrients constrain primary production in pelagic food webs, and temperature constrains benthic food webs.

Modelling Ecosystem Dynamics of the Oxygen Minimum Zones in the Angola Gyre and the Northern Benguela Upwelling System.

NASA Astrophysics Data System (ADS)

Schmidt, M.; Eggert, A.

2016-02-01

The Angola Gyre and the Northern Benguela Upwelling System are two major oxygen minimum zones (OMZ) of different kind connected by the system of African Eastern Boundary Currents. We discuss results from a 3-dimensional coupled biogeochemical model covering both oxygen-deficient systems. The biogeochemical model component comprises trophic levels up to zooplankton. Physiological properties of organisms are parameterized from field data gained mainly in the course of the project "Geochemistry and Ecology of the Namibian Upwelling System" (GENUS). The challenge of the modelling effort is the different nature of both systems. The Angola Gyre, located in a "shadow zone" of the tropical Atlantic, has a low productivity and little ventilation, hence a long residence time of water masses. In the northern Benguela Upwelling System, trade winds drive an intermittent, but permanent nutrient supply into the euphotic zone which fuels a high coastal productivity, large particle export and high oxygen consumption from dissimilatory processes. In addition to the local processes, oxygen-deficient water formed in the Angola Gyre is one of the source water masses of the poleward undercurrent, which feeds oxygen depleted water into the Benguela system. In order to simulate the oxygen distribution in the Benguela system, both physical transport as well as local biological processes need to be carefully adjusted in the model. The focus of the analysis is on the time scale and the relative contribution of the different oxygen related processes to the oxygen budgets in both the oxygen minimum zones. Although these are very different in both the OMZ, the model is found as suitable to produce oxygen minimum zones comparable with observations in the Benguela and the Angola Gyre as well. Variability of the oxygen concentration in the Angola Gyre depends strongly on organismic oxygen consumption, whereas the variability of the oxygen concentration on the Namibian shelf is governed mostly by pole-ward advection of tropical water masses.

Persistent warmth across the Benguela upwelling system during the Pliocene epoch

NASA Astrophysics Data System (ADS)

Rosell-Melé, Antoni; Martínez-Garcia, Alfredo; McClymont, Erin L.

2014-01-01

A feature of Pliocene climate is the occurrence of "permanent El Niño-like" or "El Padre" conditions in the Pacific Ocean. From the analysis of sediment cores in the modern northern Benguela upwelling, we show that the mean oceanographic state off Southwest Africa during the warm Pliocene epoch was also analogous to that of a persistent Benguela "El Niño". At present these events occur when massive southward flows of warm and nutrient-poor waters extend along the coasts of Angola and Namibia, with dramatic effects on regional marine ecosystems and rainfall. We propose that the persistent warmth across the Pliocene in the Benguela upwelling ended synchronously with the narrowing of the Indonesian seaway, and the early intensification of the Northern Hemisphere Glaciations around 3.0-3.5 Ma. The emergence of obliquity-related cycles in the Benguela sea surface temperatures (SST) after 3 Ma highlights the development of strengthened links to high latitude orbital forcing. The subsequent evolution of the Benguela upwelling system was characterized by the progressive intensification of the meridional SST gradients, and the emergence of the 100 ky cycle, until the modern mean conditions were set at the end of the Mid Pleistocene transition, around 0.6 Ma. These findings support the notion that the interplay of changes in the depth of the global thermocline, atmospheric circulation and tectonics preconditioned the climate system for the end of the warm Pliocene epoch and the subsequent intensification of the ice ages.

Differences between mono-generic and mixed diatom silicon isotope compositions trace present and past nutrient utilisation off Peru

NASA Astrophysics Data System (ADS)

Doering, Kristin; Ehlert, Claudia; Grasse, Patricia; Crosta, Xavier; Fleury, Sophie; Frank, Martin; Schneider, Ralph

2016-03-01

In this study we combine for the first time silicon (Si) isotope compositions of small mixed diatom species (δ30SibSiO2) and of large handpicked mono-generic (i.e. genus = Coscinodiscus) diatom samples (δ30SiCoscino) with diatom assemblages extracted from marine sediments in the Peruvian upwelling region in order to constrain present and past silicate utilisation. The extension of a previous core-top data set from the Peruvian shelf demonstrates that δ30SiCoscino values record near-complete Si utilisation, as these are similar to the isotopic composition of the subsurface source waters feeding the upwelling. In contrast, the δ30SibSiO2 of small mixed diatom species increase southward along the shelf as well as towards the shore. We attribute highest δ30SibSiO2 values partly to transient iron limitation but primarily to the gradual increase of Si isotope fractionation within the seasonal diatom succession, which are mainly recorded by small diatom species during intense bloom events. In contrast, lower δ30SibSiO2 values are related to initial Si isotope utilisation during periods of weak upwelling, when low Si(OH)4 concentrations do not permit intense blooms and small diatom species record substantially lower δ30Si signatures. As such, we propose that the intensity of the upwelling can be deduced from the offset between δ30SibSiO2 and δ30SiCoscino (Δ30Sicoscino-bSiO2), which is low for strong upwelling conditions and high for prevailing weak upwelling. We apply the information extracted from surface sediments to generate a record of the present-day main upwelling region covering the past 17,700 years and find that this location has also been characterized by a persistent offset (Δ30Sicoscino-bSiO2). By comparison with the diatom assemblages we show that the coastal upwelling system changed markedly between weak and strong upwelling conditions. In addition, our model calculations to quantify species-specific Si isotope fractionation effects based on the diatom assemblages indicate an overall minor influence that cannot explain the high amplitude in the measured δ30SibSiO2 record.

Coastal upwelling and downwelling forcing of circulation in a semi-enclosed bay: Ria de Vigo

NASA Astrophysics Data System (ADS)

Barton, E. D.; Largier, J. L.; Torres, R.; Sheridan, M.; Trasviña, A.; Souza, A.; Pazos, Y.; Valle-Levinson, A.

2015-05-01

Semi-enclosed bays in upwelling regions are exposed to forcing related to winds, currents and buoyancy over the shelf. The influence of this external forcing is moderated by factors such as connectivity to the open ocean, shelter by surrounding topography, dimensions of the bay, and freshwater outflows. Such bays, preferred locations for ports, mariculture, marine industry, recreational activities and coastal settlement, present a range of characteristics, understanding of which is necessary to their rational management. Observations in such a semi-enclosed bay, the Ria de Vigo in Spain, are used to characterize the influence of upwelling and downwelling pulses on its circulation. In this location, near the northern limit of the Iberian upwelling system, upwelling events dominate during a short summer season and downwelling events the rest of the year. The ria response to the external forcing is central to nutrient supply and resultant plankton productivity that supports its high level of cultured mussel production. Intensive field studies in September 2006 and June 2007 captured a downwelling event and an upwelling event, respectively. Data from eight current profiler moorings and boat-based MiniBat/ADCP surveys provided an unprecedented quasi-synoptic view of the distribution of water masses and circulation patterns in any ria. In the outer ria, circulation was dominated by the introduction of wind-driven alongshore flow from the external continental shelf through the ria entrances and its interaction with the topography. In the middle ria, circulation was primarily related to the upwelling/downwelling cycle, with a cool, salty and dense lower layer penetrating to the inner ria during upwelling over the shelf. A warmer, lower salinity and less dense surface layer of coastal waters flowed inward during downwelling. Without external forcing, the inner ria responded primarily to tides and buoyancy changes related to land runoff. Under both upwelling and downwelling conditions, the flushing of the ria involved shelf responses to wind pulses. Their persistence for a few days was sufficient to allow waters from the continental shelf to penetrate the innermost ria. Longer term observations supported by numerical modeling are required to confirm the generality of such flushing events in the ria and determine their typical frequency, while comparative studies should explore how these scenarios fit into the range of conditions experienced in other semi-enclosed bays.

Temporal variability of near-bottom dissolved oxygen during upwelling off central Oregon

NASA Astrophysics Data System (ADS)

Adams, Katherine A.; Barth, John A.; Chan, Francis

2013-10-01

In the productive central-Oregon coastal upwelling environment, wind-driven upwelling, tides, and topographic effects vary across the shelf, setting the stage for varied biogeochemical responses to physical drivers. Current, temperature, salinity, and dissolved oxygen (DO) measurements from three moorings deployed during the upwelling seasons of 2009-2011 off the central-Oregon coast are analyzed over three time bands (interannual, subtidal, tidal) to explore the relationship between mid (70 m) and inner-shelf (15 m) upwelling dynamics and the associated effect on DO. Topographic effects are observed in each time band due to the Heceta and Stonewall Bank complex. Seasonal cumulative hypoxia (DO < 1.4 mL L-1) calculations identify two regions, a well-ventilated inner shelf and a midshelf vulnerable to hypoxia (98 ± 15 days annually). On tidal timescales, along-shelf diurnal (K1) velocities are intensified over the Bank, 0.08 m s-1 compared with 0.03 m s-1 to the north. Interannual variability in the timing of spring and fall transitions, defined using glider-measured continental slope source water temperature, is observed on the midshelf. Interannual source water DO concentrations vary on the order of 0.1 mL L-1. Each spring and summer, DO decline rates are modulated by physical and biological processes. The net observed decrease is about 30% of the expected draw down due to water-column respiration. Physical processes initiate low-oxygen conditions on the shelf through coastal upwelling and subsequently prevent the system via advection and mixing from reaching the potential anoxic levels anticipated from respiration rates alone.

Variations of the Organic Matter Composition in the Sea Surface Microlayer: A Comparison between Open Ocean, Coastal, and Upwelling Sites Off the Peruvian Coast

PubMed Central

Zäncker, Birthe; Bracher, Astrid; Röttgers, Rüdiger; Engel, Anja

2017-01-01

The sea surface microlayer (SML) is the thin boundary layer between the ocean and the atmosphere, making it important for air-sea exchange processes. However, little is known about what controls organic matter composition in the SML. In particular, there are only few studies available on the differences of the SML of various oceanic systems. Here, we compared the organic matter and neuston species composition in the SML and the underlying water (ULW) at 11 stations with varying distance from the coast in the Peruvian upwelling regime, a system with high emissions of climate relevant trace gases, such as N2O and CO2. In the open ocean, organic carbon, and amino acids were highly enriched in the SML compared to the ULW. The enrichment decreased at the coastal stations and vanished in the upwelling regime. At the same time, the degradation of organic matter increased from the open ocean to the upwelling stations. This suggests that in the open ocean, upward transport processes or new production of organic matter within the SML are faster than degradation processes. Phytoplankton was generally not enriched in the SML, one group though, the Trichodesmium-like TrL (possibly containing Trichodesmium), were enriched in the open ocean but not in the upwelling region indicating that they find a favorable habitat in the open ocean SML. Our data show that the SML is a distinct habitat; its composition is more similar among different systems than between SML and ULW of a single station. Generally the enrichment of organic matter is assumed to be reduced when encountering low primary production and high wind speeds. However, our study shows the highest enrichments of organic matter in the open ocean which had the lowest primary production and the highest wind speeds. PMID:29375483

Variations of the Organic Matter Composition in the Sea Surface Microlayer: A Comparison between Open Ocean, Coastal, and Upwelling Sites Off the Peruvian Coast.

PubMed

Zäncker, Birthe; Bracher, Astrid; Röttgers, Rüdiger; Engel, Anja

2017-01-01

The sea surface microlayer (SML) is the thin boundary layer between the ocean and the atmosphere, making it important for air-sea exchange processes. However, little is known about what controls organic matter composition in the SML. In particular, there are only few studies available on the differences of the SML of various oceanic systems. Here, we compared the organic matter and neuston species composition in the SML and the underlying water (ULW) at 11 stations with varying distance from the coast in the Peruvian upwelling regime, a system with high emissions of climate relevant trace gases, such as N 2 O and CO 2 . In the open ocean, organic carbon, and amino acids were highly enriched in the SML compared to the ULW. The enrichment decreased at the coastal stations and vanished in the upwelling regime. At the same time, the degradation of organic matter increased from the open ocean to the upwelling stations. This suggests that in the open ocean, upward transport processes or new production of organic matter within the SML are faster than degradation processes. Phytoplankton was generally not enriched in the SML, one group though, the Trichodesmium -like TrL (possibly containing Trichodesmium ), were enriched in the open ocean but not in the upwelling region indicating that they find a favorable habitat in the open ocean SML. Our data show that the SML is a distinct habitat; its composition is more similar among different systems than between SML and ULW of a single station. Generally the enrichment of organic matter is assumed to be reduced when encountering low primary production and high wind speeds. However, our study shows the highest enrichments of organic matter in the open ocean which had the lowest primary production and the highest wind speeds.

Nutrient pumping by submesoscale circulations in the mauritanian upwelling system

NASA Astrophysics Data System (ADS)

Hosegood, P. J.; Nightingale, P. D.; Rees, A. P.; Widdicombe, C. E.; Woodward, E. M. S.; Clark, D. R.; Torres, R. J.

2017-12-01

Observations made within a cold filament in the Mauritanian upwelling system demonstrate that intense submesoscale circulations at the peripheral edges of the filament are likely responsible for anomalously high levels of observed primary productivity by resupplying nutrients to the euphotic zone. Measurements made on the shelf within the recently upwelled water reveal that primary production (PP) of 8.2 gC/m-2 day-1 was supported by nitrate concentrations (NC) of 8 mmol m-3. Towards the front that defined the edge of the filament containing the upwelled water as it was transported offshore, PP dropped to 1.6 gC m-2 day-1 whilst NC dropped to 5.5 mmol m-3. Thus, whilst the observed nutrients on the shelf accounted for 90% of new production, this value dropped to ∼60% near the filament's front after accounting for vertical turbulent fluxes and Ekman pumping. We demonstrate that the N15 was likely to have been supplied at the front by submesoscale circulations that were directly measured as intense vertical velocities ⩾100 m day-1 by a drifting acoustic Doppler current profiler that crossed a submesoscale surface temperature front. At the same time, a recently released tracer was subducted out of the mixed layer within 24 h of release, providing direct evidence that the frontal circulations were capable of accessing the reservoir of nutrients beneath the pycnocline. The susceptibility of the filament edge to submesoscale instabilities was demonstrated by O(1) Rossby numbers at horizontal scales of 1-10 km. The frontal circulations are consistent with instabilities arising from a wind-driven nonlinear Ekman buoyancy flux generated by the persistent northerly wind stress that has a down-front component at the northern edge of the inshore section of the filament. The prevalence of submesoscale instabilities and their associated vertical circulations are proposed to be a key mechanism operating at sub-grid scales and sustaining new production throughout the upwelling system.

Late quaternary time series of Arabian Sea productivity: Global and regional signals

NASA Technical Reports Server (NTRS)

Clemens, Steven C.; Prell, W. L.; Murray, D. W.

1992-01-01

Modern annual floral and faunal production in the northwest Arabian Sea derives primarily from upwelling induced by strong southwest winds during June, July, and August. Indian Ocean summer monsoon winds are, in turn, driven by differential heating between the Asian continent and the Indian ocean to the south. This differential heating produces a strong pressure gradient resulting in southwest monsoon winds and both coastal and divergent upwelling off the Arabian Peninsula. Over geologic time scales (10(exp 4) to 10(exp 6) years), monsoon wind strength is sensitive to changes in boundary conditions which influence this pressure gradient. Important boundary conditions include the seasonal distribution of solar radiation, global ice volume, Indian Ocean sea surface temperature, and the elevation and albedo of the Asian continent. To the extent that these factors influence monsoon wind strength, they also influence upwelling and productivity. In addition, however, productivity associated with upwelling can be decoupled from the strength of the summer monsoon winds via ocean mechanisms which serve to inhibit or enhance the nutrient supply in the intermediate waters of the Indian Ocean, the source for upwelled waters in the Arabian Sea. To differentiate productivity associated with wind-induced upwelling from that associated with other components of the system such as nutrient sequestering in glacial-age deep waters, we employ a strategy which monitors independent components of the oceanic and atmospheric subsystems. Using sediment records from the Owen Ridge, northwest Arabian Sea, we monitor the strength of upwelling and productivity using two independent indicators, percent G. bulloides and opal accumulation. We monitor the strength of southwest monsoon winds by measuring the grain-size of lithogenic dust particles blown into the Arabian Sea from the surrounding deserts of the Somali and Arabian Peninsulas. Our current hypothesis is that the variability associated with the 41 kyr power in the G. bulloides and opal accumulation records derive from nutrient availability in the intermediate waters which are upwelled via monsoon winds. This hypothesis is testable by comparison with Cd records of intermediate and deep waters of the Atlantic and Indian Ocean.

Nearshore currents on the southern Namaqua shelf of the Benguela upwelling system

NASA Astrophysics Data System (ADS)

Fawcett, A. L.; Pitcher, G. C.; Shillington, F. A.

2008-05-01

Nearshore currents of the southern Namaqua shelf were investigated using data from a mooring situated three and a half kilometres offshore of Lambert's Bay, downstream of the Cape Columbine upwelling cell, on the west coast of South Africa. This area is susceptible to harmful algal blooms (HABs) and wind-forced variations in currents and water column structure are critical in determining the development, transport and dissipation of blooms. Time series of local wind data, and current and temperature profile data are described for three periods, considered to be representative of the latter part of the upwelling season (27 January-22 February), winter conditions (5-29 May) and the early part of the upwelling season (10 November-12 December) in 2005. Differences observed in mean wind strength and direction between data sets are indicative of seasonal changes in synoptic meteorological conditions. These quasi-seasonal variations in wind forcing affect nearshore current flow, leading to mean northward flow in surface waters early in the upwelling season when equatorward, upwelling-favourable winds are persistent. Mean near-surface currents are southward during the latter part of the upwelling season, consistent with more prolonged periods of relaxation from equatorward winds, and under winter conditions when winds were predominantly poleward. Within these seasonal variations in mean near-surface current direction, two scales of current variability were evident within all data sets: strong inertial oscillations were driven by diurnal winds and introduced vertical shear into the water column enhancing mixing across the thermocline, while sub-inertial current variability was driven by north-south wind reversals at periods of 2-5 days. Sub-inertial currents were found to lag wind reversals by approximately 12 h, with a tendency for near-surface currents to flow poleward in the absence of wind forcing. Consistent with similar sites along the Californian and Iberian coasts, the headland at Cape Columbine is considered to influence currents and circulation patterns during periods of relaxation from upwelling-favourable winds, favouring the development of a nearshore poleward current, leading to poleward advection of warm water, the development of stratification, and the creation of potentially favourable conditions for HAB development.

Simultaneous Quantification of Temperature, Pyroxenite Abundance, and Upwelling Rates in the Iceland Mantle Source

NASA Astrophysics Data System (ADS)

Brown, E.; Lesher, C. E.

2014-12-01

The compositions and volumes of basalts erupted at the earth's surface are a function of mantle temperature, mantle composition, and the rate at which the mantle upwells through the melting zone. Thus, basaltic magmatism has long been used to probe the thermal and physiochemical state of the earth's mantle. Great insight has been gained into the mantle beneath the global spreading ridge system, where the mantle source is assumed to be homogeneous peridotite that upwells passively [1]. However, it is now recognized that many basalt source regions are lithologically heterogeneous (i.e. containing recycled lithospheric material ranging from harzburgite to pyroxenite) and upwell at rates in excess of those governed by plate separation. To account for these complexities, we have developed a forward melting model for lithologically heterogeneous mantle that incorporates thermodynamically and experimentally constrained melting functions for a range of peridotite and pyroxenite lithologies. The model is unique because it quantifies mantle upwelling rates based on the net buoyancy of the source, thus providing a means for linking basalt compositions/volumes to mantle flow while accounting for source heterogeneity. We apply the model to investigate the mantle properties governing magmatism along different rift segments in Iceland, where lithologic heterogeneity and variable upwelling rates have been inferred through geochemical means [2,3]. Using constraints from seismically determined crustal thicknesses and recent estimates of the proportion of pyroxenite-derived melt contributing to Icelandic basalt compositions [4,5], we show that mantle sources beneath Iceland have excess potential temperatures >85 °C, contain <7% pyroxenite, and maximum upwelling rates ~14 times the passive rate. Our modeling highlights the dominant role of elevated mantle temperature and enhanced upwelling for high productivity magmatism in Iceland, and a subordinate role for mantle heterogeneity, which is required to account for much of the observed chemical and isotopic diversity. [1] Langmuir et al, 1992, AGU Geophys. Mono. Ser. 71 [2] Chauvel & Hemond, 2000, G-cubed, v 1 [3] Kokfelt et al, 2003, EPSL, v 214 [4] Sobolev et al, 2007, Science, v 316 [5] Shorttle et al, 2014, EPSL, v 395

The Effects of Ridge Axis Width on Mantle Melting at Mid-Ocean Ridges

NASA Astrophysics Data System (ADS)

Montesi, L.; Magni, V.; Gaina, C.

2017-12-01

Mantle upwelling in response to plate divergence produces melt at mid-ocean ridges. Melt starts when the solidus is crossed and stops when conductive cooling overcomes heat advection associated with the upwelling. Most mid-ocean ridge models assume that divergence takes place only in a narrow zone that defines the ridge axis, resulting in a single upwelling. However, more complex patterns of divergence are occasionally observed. The rift axis can be 20 km wide at ultraslow spreading center. Overlapping spreading center contain two parallel axes. Rifting in backarc basins is sometimes organized as a series of parallel spreading centers. Distributing plate divergence over several rifts reduces the intensity of upwelling and limits melting. Can this have a significant effect on the expected crustal thickness and on the mode of melt delivery at the seafloor? We address this question by modeling mantle flow and melting underneath two spreading centers separated by a rigid block. We adopt a non-linear rheology that includes dislocation creep, diffusion creep and yielding and include hydrothermal cooling by enhancing thermal conductivity where yielding takes place. The crustal thickness decreases if the rifts are separated by 30 km or more but only if the half spreading rate is between 1 and 2 cm/yr. At melting depth, a single upwelling remains the norm until the separation of the rifts exceeds a critical value ranging from 15 km in the fastest ridges to more than 50 km at ultraslow spreading centers. The stability of the central upwelling is due to hydrothermal cooling, which prevents hot mantle from reaching the surface at each spreading center. When hydrothermal cooling is suppressed, or the spreading centers are sufficiently separated, the rigid block becomes extremely cold and separates two distinct, highly asymmetric upwellings that may focus melt beyond the spreading center. In that case, melt delivery might drive further and further the divergence centers, whereas, when a single upwelling is retained, melt delivery would drive the spreading centers closer together. Thus, the system composed of two rifts is unstable and, if observed in nature, indicates either a transient geodynamic regime, like a recent change in spreading rates, or control structural or stress heterogeneities.

An equilibrium model for the coupled ocean-atmosphere boundary layer in the tropics

NASA Technical Reports Server (NTRS)

Sui, C.-H.; Lau, K.-M.; Betts, Alan K.

1991-01-01

An atmospheric convective boundary layer (CBL) model is coupled to an ocean mixed-layer (OML) model in order to study the equilibrium state of the coupled system in the tropics, particularly in the Pacific region. The equilibrium state of the coupled system is solved as a function of sea-surface temperature (SST) for a given surface wind and as a function of surface wind for a given SST. It is noted that in both cases, the depth of the CBL and OML increases and the upwelling below the OML decreases, corresponding to either increasing SST or increasing surface wind. The coupled ocean-atmosphere model is solved iteratively as a function of surface wind for a fixed upwelling and a fixed OML depth, and it is observed that SST falls with increasing wind in both cases. Realistic gradients of mixed-layer depth and upwelling are observed in experiments with surface wind and SST prescribed as a function of longitude.

Changes in upwelling and surface productivity in the Eastern Pacific during Terminations I and II

NASA Astrophysics Data System (ADS)

Erdem, Z.; De Bar, M.; Stolwijk, D.; Schneider, R. R.; S Sinninghe Damsté, J.; Schouten, S.

2017-12-01

The Eastern Pacific coastal system is characterized by intense upwelling and consequently by an enhanced surface primary productivity. Combination of this high organic matter flux with sluggish bottom water ventilation results in one of the most pronounced oxygen minimum zones reaching from offshore California in the North to offshore Chile in the South. As a result of this process, the region is particularly interesting in view of nutrient and carbon cycling as well as ecosystem dynamics. The dynamics of the upwelling and oxygen concentrations are closely related to climatic conditions. Therefore, paleo-reconstructions of different settings are crucial in order to improve our understanding of the response of these nutrient-rich, oxygen-deficient, environments in relation to the recent global ocean warming, acidification and deoxygenation. In this study, we present downcore results from three different sites in the Eastern Pacific: offshore California (IODP site 1012), Peru (M77/2-52-2) and Chile (IODP site 1234). We applied different biomarkers as proxies to decipher changes in phytoplankton community composition, including the upwelling index based on long chain diols, and other common productivity indicators such as bulk organic carbon, carbonate and biogenic opal. In addition, application of carbon and nitrogen isotope ratios of total organic carbon and benthic foraminifera complement our multiproxy approach. Herewith we aim to compare at least two glacial-interglacial transitions with different magnitudes of deglacial warming along the Eastern Pacific upwelling systems at different latitudes. The data presented will cover the last 160 ka BP offshore California and Chile, and 30 ka BP offshore Peru enabling comparison between glacial Terminations I and II.

Seasonal and annual variability of coastal sulphur plumes in the northern Benguela upwelling system

PubMed Central

Dadou, Isabelle

2018-01-01

We investigated the seasonal and annual variability of surface sulphur plumes in the northern Benguela upwelling system off Namibia because of their significant impacts on the marine ecosystem, fishing industry, aquaculture farming and tourism due to their toxic properties. We identified the sulphur plumes in ocean colour satellite data of the medium resolution imaging spectrometer (MERIS) for the 2002–2012 time period using the differences in the spectral properties of Namibian Benguela optical water types. The sulphur events have a strong seasonal cycle with pronounced main and off-seasons forced by local and remote-driven processes. The main peak season is in late austral summer and early austral autumn at the beginning of the annual upwelling cycle caused by increasing equatorwards alongshore winds. The sulphur plume activity is high between February and April during the seasonal oxygen minimum associated with the seasonal reduction of cross-shore ventilation of the bottom waters, the seasonal southernmost position of the Angola Benguela Frontal Zone, the seasonal maximum of water mass fractions of South Atlantic and Angola Gyre Central Waters as well as the seasonal arrival of the downwelling coastal trapped waves. The off-season is in austral spring and early austral summer during increased upwelling intensity and enhanced oxygen supply. The annual variability of sulphur events is characterized by very high activities in years 2004, 2005 and 2010 interrupted by periods of lower activity in years 2002 to 2003, 2006 to 2009 and 2011 to 2012. This result can be explained by the relative contributions or adding effects of local and remote-driven forces (from the equatorial area). The probability for the occurrence of sulphur plumes is enhanced in years with a lower annual mean of upwelling intensity, decreased oxygen supply associated with decreased lateral ventilation of bottom waters, more southern position of the Angola Benguela Frontal Zone, increased mass fraction of South Atlantic Central Water and stronger downwelling coastal trapped waves. Understanding of the variability and forcing processes of the toxic sulphur events will help in the future to monitor and forecast them as well as to manage their social and economic consequences in the northern Benguela upwelling system off Namibia. PMID:29420587

a Numerical Study of Basic Coastal Upwelling Processes.

NASA Astrophysics Data System (ADS)

Li, Zhihong

Available from UMI in association with The British Library. Two-dimensional (2-D) and three-dimensional (3 -D) numerical models with a second order turbulence closure are developed for the study of coastal upwelling processes. A logarithmic coordinate system is introduced to obtain increased resolution in the regions near the surface and bottom where high velocity shear occurs and in the upwelling zone where its width is confined to the coast. In the experiments performed in the 2-D model an ocean initially at rest is driven by a spatially uniform alongshore wind-stress. There is a development of an offshore flow in the surface layer and an onshore flow below the surface layer. In the wind-stress direction there is a development of a coastal surface jet. The neglect of the alongshore pressure gradient leads to the intensification of the jet, and the concentration of the onshore flow in an over-developed Ekman layer yielding an unrealistic deepening of a bottom mixed layer. When bathymetric variations are introduced, some modifications in the dynamics of upwelling are observed. On the shelf region there is another upwelling zone and isotherms are interested with the bottom topography. When an alongshore pressure gradient is added externally into the model, the strength of the coastal jet decreases and a coastal undercurrent exists at greater depth. In addition the return onshore flow is largely independent of depth and the deepening of the bottom mixed layer disappears. In the experiments performed in the 3-D model a wind-stress with limited domain is used. Coastally trapped waves are generated and propagate along the coastline leading to a development of an alongshore pressure gradient, which has a significant effect on upwelling. The evolution of the alongshore flow, vertical velocity and the temperature is determined by both remote and local wind due to the propagation of waves. As the integration proceeds, the flow pattern becomes remarkably 3-dimensional. Finally the influence of bathymetric variations on upwelling processes is examined.

Bio-Optical Measurements in Upwelling Ecosystems in Support of SIMBIOS. Chapter 4

NASA Technical Reports Server (NTRS)

Chavez, Francisco P.; Strutton, Peter G.; Kuwahara, Victor S.; Mahoney, Kevin L.; Drake, Eric

2003-01-01

The upwelling region of the equatorial Pacific Ocean, which spans one quarter of the earth s circumference, strongly impacts global biogeochemistry. This upwelling system has significant implications for global CO2 fluxes (Tans et al., 1990; Takahashi et al., 1997; Feely et al., 1999), as well as primary and secondary production (Chavez and Barber, 1987; Chavez and Toggweiler, 1995; Chavez et al., 1996; Dugdale and Wilkerson, 1998; Chavez et al., 1999; Strutton and Chavez, 2000). In addition, the region represents a vast oceanic (case 1) region over which validation data for SeaWiFS are needed. This project consists of an optical mooring program and cruise-based measurements focused on measuring biological and chemical variability in the equatorial Pacific and obtaining validation data for SeaWiFS.

Sr/Ca and Mg/Ca in Glycymeris glycymeris (Bivalvia) shells from the Iberian upwelling system: Ontogeny and environmental control

NASA Astrophysics Data System (ADS)

Freitas, Pedro; Richardson, Christopher; Chenery, Simon; Monteiro, Carlos; Butler, Paul; Reynolds, David; Scourse, James; Gaspar, Miguel

2017-04-01

Bivalve shells have a great potential as high-resolution geochemical proxy archives of marine environmental conditions. In addition, sclerochronology of long-lived bivalve species (e.g. Arctica islandica) provides a timeline of absolutely dated shell material for geochemical analysis that can extend into the past beyond the lifetime of single individuals through the use of replicated crossmatched centennial to millennial chronologies. However, the interpretation of such records remains extremely challenging and complex, with multiple environmental and biological processes affecting element incorporation in the shell (e.g. crystal fabrics, organic matrix, biomineralization mechanisms and physiological processes). As a result, the effective use of bivalve shell elemental/Ca ratios as palaeoenvironmental proxies has been limited, often to species-specific applications or applications restricted to particular environmental settings. The dog-cockle, Glycymeris glycymeris, is a relatively long-lived bivalve (up to 200 years) that occurs in coarse-grained subtidal sediments of coastal shelf seas of Europe and North West Africa. Glycymeris glycymeris shells provide a valuable, albeit not fully explored, archive to reconstruct past environmental variability in an area lacking sclerochronological studies due to the rarity of long-lived bivalves and lack of coral reefs. In this study, we evaluate the potential of Sr/Ca and Mg/Ca ratios in G. glycymeris shells as geochemical proxies of upwelling conditions in the Iberian Upwelling System, the northern section of the Canary Current Eastern Boundary Upwelling System. Sr/Ca and Mg/Ca generally co-varied significantly and a clear ontogenetic, non-environmental related change in Sr/Ca and Ba/Ca variability was observed. High Sr/Ca and Mg/Ca ratios in older shells (> 10 years old) were found to be associated with the occurrence of growth lines deposited during the winter reduction in shell growth. Nevertheless, Sr/Ca and Mg/Ca variation in older shells was synchronous with contemporary environmental conditions, i.e. upwelling intensity and salinity. The use of Sr or Mg in G. glycymeris shells as valid geochemical environmental proxies in the Iberian Upwelling System remains complex and requires further research to unravel environmental and physiological/biomineralization controls. This study was financed by the Portuguese Fundação para a Ciência e Tecnologia (FCT) GLYCY Project (contract PTDC/AAC-CLI/118003/2010) and a sabbatical grant to PSF (Ref: SFRH/BSAB/127786/2016), co-supported by POCH and the European Social Fund. Funding for consumable costs was provided by Bangor University.

Analysis of the Inshore California Current System Off Central California Using Naval Oceanographic Office Survey Data from 1997 to 2002

DTIC Science & Technology

2012-09-01

toward the coast due to upwelling . Acceleration potential on the 26.0 kg/m3 isopycnal showed persistent poleward inshore flow for all cruises and...100 km from shore that divided low offshore and high inshore spiciness. The 26.0 kg/m3 isopycnal sloped upward toward the coast due to upwelling ...8  Figure 3.  The boundary conditions (and the direction convention of the

Controlling factors of the OMZ in the Arabian Sea

NASA Astrophysics Data System (ADS)

Resplandy, L.; Lévy, M.; Bopp, L.; Echevin, V.; Pous, S.; Sarma, V. V. S. S.; Kumar, D.

2012-05-01

In-situ observations indicate that the Arabian Sea oxygen minimum zone (OMZ) is only weakly influenced by the strong seasonal cycle of ocean dynamic and biogeochemistry forced by the asian monsoon system and it is spatially decorrelated from the coastal upwelling systems where the biological production is the strongest. In this study we examine the factors controlling the seasonality and the spatial distribution of the OMZ in the Arabian Sea using a coupled bio-physical model. We find that the oxygen concentration in the OMZ displays a seasonal cycle with an amplitude of 5-15 % of the annual mean oxygen concentration. The OMZ is ventilated by lateral ventilation along the western boundary current and in the coastal undercurrent along India during the summer monsoon and by coastal downwelling and negative Ekman pumping during the fall intermonsoon and winter monsoon. This ventilation is counterbalanced by strong coastal upwelling and positive Ekman pumping of low oxygen waters at the base of the OMZ during the spring intermonsoon. Although the factors controlling the OMZ seasonality are associated with the men circulation, we find that mesoscale dynamics modulates them by limiting the vertical ventilation during winter and enhancing it through lateral advection during the rest of the year. Processes explaining the establishment and spatial distribution of the OMZ were quantified using a perturbation experiment initialised with no OMZ. As expected, the oxygen depletion is triggered by strong biological activity in central Arabian Sea during winter and in western and eastern boundary coastal upwelling systems during summer. We find that the 3-D ocean dynamic largely controls the spatial distribution of the OMZ. The eastward shift ensues from the northward lateral transport of ventilated waters along the western and eastern coasts and the advection offshore of low oxygen waters formed in the upwelling system.

Surface circulation and upwelling patterns around Sri Lanka

NASA Astrophysics Data System (ADS)

de Vos, A.; Pattiaratchi, C. B.; Wijeratne, E. M. S.

2013-09-01

Sri Lanka occupies a unique location within the equatorial belt in the northern Indian Ocean with the Arabian Sea on its western side and the Bay of Bengal on its eastern side. The region is characterised by bi-annually reversing monsoon winds resulting from seasonal differential heating and cooling of the continental land mass and the ocean. This study explored elements of the dynamics of the surface circulation and coastal upwelling in the waters around Sri Lanka using satellite imagery and the Regional Ocean Modelling System (ROMS) configured to the study region and forced with ECMWF interim data. The model was run for 2 yr to examine the seasonal and shorter term (∼10 days) variability. The results confirmed the presence of the reversing current system in response to the changing wind field: the eastward flowing Southwest Monsoon Current (SMC) during the Southwest (SW) monsoon transporting 11.5 Sv and the westward flowing Northeast Monsoon Current (NMC) transporting 9.5 Sv during the Northeast (NE) monsoon, respectively. A recirculation feature located to the east of Sri Lanka during the SW monsoon, the Sri Lanka Dome, is shown to result from the interaction between the SMC and the Island of Sri Lanka. Along the eastern and western coasts, during both monsoon periods, flow is southward converging along the south coast. During the SW monsoon the Island deflects the eastward flowing SMC southward whilst along the east coast the southward flow results from the Sri Lanka Dome recirculation. The major upwelling region, during both monsoon periods, is located along the south coast and is shown to be due to flow convergence and divergence associated with offshore transport of water. Higher surface chlorophyll concentrations were observed during the SW monsoon. The location of the flow convergence and hence the upwelling centre was dependent on the relative strengths of wind driven flow along the east and west coasts: during the SW (NE) monsoon the flow along the western (eastern) coast was stronger and hence the upwelling centre was shifted to the east (west). The presence of upwelling along the south coast during both monsoon periods may explain the blue whale (Balaenoptera musculus) aggregations in this region.

Wind stress and heat fluxes over a Brazilian Coastal Upwelling

NASA Astrophysics Data System (ADS)

Dourado, Marcelo; Candella, Rogério

2017-04-01

Coastal upwelling zones have been intensively studied in the last decades especially due to their importance to the biological cycle. The coastal upwelling system of the Cabo Frio region (east coast of the Rio de Janeiro state, Brazil) keeps the surface water cold during most part of the year, what induces a stable atmospheric boundary layer associated to northeast winds. The main goal of this study is to investigate the wind stress and heat fluxes exchanges between the ocean and the atmosphere in that area. For this purpose, a set of hourly data meteorological and oceanographic data collected by a Wavescan metocean buoy anchored at 23o59S; 42oW, were used, as well as solar radiation and relative humidity from a terrestrial meteorological station from the Instituto Nacional de Meteorologia (InMet). COARE 3.0 algorithm was used to calculate the latent and sensible heat fluxes. In this discussion, positive values represent fluxes towards the ocean. The average net heat flux over our study period is 88 W m-2. The reduction of the net heat flux is due to the increase of the ocean latent heat loss, although a reduction in incoming shortwave radiation and an increase in ocean long wave cooling also contributes. The latent heat is 20 times larger than the sensible heat flux, but the mean value of the latent heat flux, 62 W m-2, is half the typical value found in open ocean. The temporal variability of both sensible and latent heat fluxes reflects their dependence on wind speed and air-sea temperature differences. When upwelling events, here periods when diurnal SST is lower than 18oC, are compared with undisturbed (without upwelling) events, it can be noted the sensible heat fluxes are positives and 10 times greater in magnitude. This is related to an increment, during these upwelling events, of the air-sea temperature difference and an increasing of the wind speed. The cold waters of the upwelling increase the air-sea temperature gradient and, also, the horizontal land-sea gradient. This could intensifies the sea breeze. At the same time, the latent heat flux to the atmosphere is reduced. As expected, cold waters from the upwelling imply in the reduction of the evaporation, and so the latent heat fluxes also reduce significantly. As upwelling events in this region are associated to the presence of the South Atlantic high pressure, NE winds, during these periods of cold water the net heat flux toward the ocean surface is intensified.

Can upwelling signals be detected in intertidal fishes of different trophic levels?

PubMed

Pulgar, J; Poblete, E; Alvarez, M; Morales, J P; Aranda, B; Aldana, M; Pulgar, V M

2013-11-01

For intertidal fishes belonging to three species, the herbivore Scartichthys viridis (Blenniidae), the omnivore Girella laevifrons (Kyphosidae) and the carnivore Graus nigra (Kyphosidae), mass and body size relationships were higher in individuals from an upwelling zone compared with those from a non-upwelling zone. RNA:DNA were higher in the herbivores and omnivores from the upwelling zone. Higher biomass and RNA:DNA in the upwelling intertidal fishes may be a consequence of an increased exposure to higher nutrient availability, suggesting that increased physiological conditioning in vertebrates from upwelling areas can be detected and measured using intertidal fishes of different trophic levels. © 2013 The Fisheries Society of the British Isles.

Seasonality in planktic foraminifera of the central California coastal upwelling region

NASA Astrophysics Data System (ADS)

Davis, Catherine V.; Hill, Tessa M.; Russell, Ann D.; Gaylord, Brian; Jahncke, Jaime

2016-09-01

The close association between planktic foraminiferal assemblages and local hydrography make foraminifera invaluable proxies for environmental conditions. Modern foraminiferal seasonality is important for interpreting fossil distributions and shell geochemistry as paleoclimate proxies. Understanding this seasonality in an active upwelling area is also critical for anticipating which species may be vulnerable to future changes in upwelling intensity and ocean acidification. Two years (2012-2014) of plankton tows, along with conductivity-temperature-depth profiles and carbonate chemistry measurements taken along the north-central California shelf, offer new insights into the seasonal dynamics of planktic foraminifera in a seasonal coastal upwelling regime. This study finds an upwelling affinity for Neogloboquadrina pachyderma as well as a seasonal and upwelling associated alternation between dominance of N. pachyderma and Neogloboquadrina incompta, consistent with previous observations. Globigerina bulloides, however, shows a strong affinity for non-upwelled waters, in contrast to findings in Southern California where the species is often associated with upwelling. We also find an apparent lunar periodicity in the abundances of all species and document the presence of foraminifera even at very low saturation states of calcite.

Development of upwelling on pathway and freshwater transport of Pearl River plume in northeastern South China Sea

NASA Astrophysics Data System (ADS)

Chen, Zhaoyun; Jiang, Yuwu; Liu, James T.; Gong, Wenping

2017-08-01

In situ observations, satellite images, and numerical modeling results have shown that the Pearl River plume axis extends alongshore and passes through two separate upwelling regions—one off the Guangdong and Fujian coasts (the Yuedong upwelling) and the other in the Taiwan Bank during the initial and medium stages of the Yuedong upwelling, while it is directed offshore when the Yuedong upwelling is strong. Model experiments are conducted to examine the effects of wind strength and baroclinicity on the upwelling and the corresponding pathway and freshwater transport of the Pearl River plume. The baroclinic effect is important to intensifying the horizontal velocity at the upwelling front and freshwater transport in the northeastern South China Sea. The freshwater transport flux is further decomposed into advection, vertical shear, and tidal pumping components, and advection is the dominant contributor. As the Yuedong upwelling develops, the zone with a relatively high-pressure gradient moves offshore due to offshore Ekman transport and the shift in the upwelling front, which is responsible for the offshore transport of the river plume. When the river plume is transported to the outer-shelf, sometimes it can be further entrained into eddies, allowing its export to the open sea.

Spatio-temporal variability of upwelling along the southwest coast of India based on satellite observations

NASA Astrophysics Data System (ADS)

Jayaram, Chiranjivi; Kumar, P. K. Dinesh

2018-03-01

Upwelling phenomenon along the eastern boundaries of global ocean has received greater attention in the recent times due to its environmental and economic significance in the global warming and the scenario of changing climate as opined by IPCC AR5. In this context, the availabile satellite data on sea surface winds, sea surface temperature (SST), sea level anomaly (SLA) and chlorophyll-a concentration (Chl-a), for the period 1981-2016 were analyzed to identify the coastal upwelling pattern in the Southeastern Arabian Sea (SEAS). Synergistic approach, using winds, SST, SLA and Chl-a revealed that strong upwelling was prevailing between 8°N and 12°N. During the study period, geographical differences existed in the peak values of upwelling favorable conditions considered for study. Analysis of the alongshore winds which are conducive for upwelling were observed to be curtailed towards the northern part of the study region between 2005 and 2010. Also, the strength of upwelling reduced during the strong ENSO years of 1997 and 2015. Linear regression based trend analysis of upwelling indices like Ekman transport, SST and chlorophyll along the coast, during the upwelling period, revealed slight increase in the strength towards the southern region while it decreased to the north during the study period.

Controls on Mixing-Dependent Denitrification in Hyporheic Zones

NASA Astrophysics Data System (ADS)

Hester, E. T.; Young, K. I.; Widdowson, M. A.

2013-12-01

Interaction of surface water and groundwater in hyporheic sediments of river systems is known to create unique biogeochemical conditions that can attenuate contaminants flowing downstream. Oxygen, carbon, and the contaminants themselves (e.g., excess nitrate) often advect together through the hyporheic zone from sources in surface water. However, the ability of the hyporheic zone to attenuate contaminants in upwelling groundwater plumes as they exit to rivers is less known. Such reactions may be more dependent on mixing of carbon and oxygen sources from surface water with contaminants from deeper groundwater. We simulated hyporheic flow cells and upwelling groundwater together with mixing-dependent denitrification of an upwelling nitrate plume in shallow riverbed sediments using MODFLOW and SEAM3D. For our first set of model scenarios, we set biogeochemical boundary conditions to be consistent with situations where only mixing-dependent denitrification occurred within the model domain. This occurred where dissolved organic carbon (DOC) advecting from surface water through hyporheic flow cells meets nitrate upwelling from deeper groundwater. This would be common where groundwater is affected by septic systems which contribute nitrate that upwells into streams that do not have significant nitrate sources from upstream. We conducted a sensitivity analysis that showed that mixing-dependent denitrification increased with parameters that increase mixing itself, such as the degree of heterogeneity of sediment hydraulic conductivity (K). Mixing-dependent denitrification also increased with certain biogeochemical boundary concentrations such as increasing DOC or decreasing dissolved oxygen (DO) advecting from surface water. For our second set of model scenarios, we set biogeochemical boundary conditions to be consistent with common situations where non-mixing-dependent denitrification also occurred within the model domain. For example, when nitrate concentrations are substantial in water advecting from surface water, non-mixing-dependent denitrification can occur within the hyporheic flow cells. This would be common where surface water and groundwater have high nitrate concentrations in agricultural areas. We conducted a sensitivity analysis for this set of model scenarios as well, to evaluate controls on the relative balance of mixing-dependent and non-mixing-dependent denitrification. We found that non-mixing-dependent denitrification often has higher potential to consume nitrate than mixing-dependent denitrification. This is because non-mixing-dependent denitrification is not confined to the relatively small mixing zone between upwelling groundwater and hyporheic flow cells, and hence often has longer residence times available for consumption of existing oxygen followed by consumption of nitrate. Nevertheless, the potential for hyporheic zones to attenuate upwelling nitrate plumes appears to be substantial, yet is variable depending on geomorphic, hydraulic, and biogeochemical conditions.

Long-time observation of annual variation of Taiwan Strait upwelling in summer season

NASA Astrophysics Data System (ADS)

Tang, D. L.; Kawamura, H.; Guan, L.

The Taiwan Strait is between Taiwan Island and Mainland China, where several upwelling zones are well known for good fishing grounds. Earlier studies in the strait have been conducted on detecting upwelling by ship measurements with short-term cruises, but long-term variations of upwelling in this region are not understood. The present paper examines satellite images for a long-time observation of two major upwelling zones in the Taiwan Strait: Taiwan Bank Upwelling (TBU) and Dongshan Upwelling (DSU). Sea surface temperature (SST) and chlorophyll a (Chl-a) images have been analyzed for summer months (June, July, and August) from 1980 to 2002. Results reveal annual variation of two upwelling zones. These two upwelling zones occur every year characterized with distinct low water temperature and high Chl-a concentrations. During the period from 1989 to 1998, SST is found to be 1.15 °C lower in TBU, and 1.42 °C lower in the DSU than the Taiwan Strait. The size of DSU has been found to be larger during summer of 1989, 1990, 1993 and 1995; TBU has been found to be weak during summer of 1994 and 1997. Ocean color images obtained from CZCS, OCI, and SeaWiFS also show high Chl-a concentrations (0.8-2.5 mg m-3) in two upwelling zones, which coincide with low SST in terms of location, shape, and time. These high Chl-a concentrations in TBU and DSU may be related to upwelling waters that bring nutrients from bottom to surface. The present results also show the potential of using satellite data for monitoring of ocean environment for long time period.

BOREAS AFM-1 NOAA/ATDD Long-EZ Aircraft Flux data Over the SSA

NASA Technical Reports Server (NTRS)

Crawford, Timothy L.; Baldocchi, Dennis; Hall, Forrest G. (Editor); Knapp, David E. (Editor); Gunter, Laureen; Dumas, Ed; Smith, David E. (Technical Monitor)

2000-01-01

This data set contains measurements from the Airborne Flux and Meteorology (AFM)-1 National Oceanographic and Atmospheric Administration/Atmospheric Turbulence and Diffusion Division (NOAA/ATDD) Long-EZ Aircraft collected during the 1994 Intensive Field Campaigns (IFCs) at the southern study area (SSA). These measurements were made from various instruments mounted on the aircraft. The data that were collected include aircraft altitude, wind direction, wind speed, air temperature, potential temperature, water mixing ratio, U and V components of wind velocity, static pressure, surface radiative temperature, downwelling and upwelling total radiation, downwelling and upwelling longwave radiation, net radiation, downwelling and upwelling photosynthectically active radiation (PAR), greenness index, CO2 concentration, O3 concentration, and CH4 concentration. There are also various columns that indicate the standard deviation, skewness, kurtosis, and trend of some of these data. The data are stored in tabular ASCII files. The NOAA/ATDD Long-EZ aircraft flux data are available from the Earth Observing System Data and Information System (EOSDIS) Oak Ridge National Laboratory (ORNL) Distributed Active Archive Center (DAAC). The data files are available on a CD-ROM (see document number 20010000884).

Impact of Equatorial Waves on the Variability of Upwelling Process Along West Coast of India

NASA Astrophysics Data System (ADS)

Prakash, K. R.; Nigam, T.; Pant, V.

2017-12-01

Coastal upwelling is a seasonal phenomenon along the south eastern Arabian Sea (SEAS) due to favourable wind setup during Indian Summer Monsoon Season (June-September). This upwelling brings subsurface cold and nutrient rich water to the surface layers. The cold water transported northward by the altered along shore current of west coast of India in the post-monsoon season. The different climatological forcing of positive Indian Ocean Dipole (IOD) and normal years were utilised to simulate the upwelling off the west coast of India using a three dimensional Regional Ocean Modelling System (ROMS). Strength of upwelling and the northward transport were found to be weaken for positive IOD simulations as compared to normal years. Analysis suggests that the meridional wind stress weakening resulted into a decrease in strength of West India Coastal Current (WICC) and, therefore, reduced magnitude of offshore Ekman transport. The mixed layer heat budget calculation also supports the findings by showing dominated vertical process in comparison to net heat flux effect. The post-monsoon northward transport of cold water was found to be correlated with the coastally trapped downwelling Kelvin waves. These waves are the only remote forcing from the Bay of Bengal that reaches to the south-eastern Arabian Sea during the months of October-December. The composite of sea surface height anomalies for the positive IOD and normal years shows that the downwelling Kelwin wave was absent during October-December.

Counterintuitive effects of global warming-induced wind patterns on primary production in the Northern Humboldt Current System.

PubMed

Mogollón, Rodrigo; R Calil, Paulo H

2018-07-01

It has been hypothesized that global warming will strengthen upwelling-favorable winds in the Northern Humboldt Current System (NHCS) as a consequence of the increase of the land-sea thermal gradient along the Peruvian coast. The effect of strengthened winds in this region is assessed with the use of a coupled physical-biogeochemical model forced with projected and climatological winds. Strengthened winds induce an increase in primary production of 2% per latitudinal degree from 9.5°S to 5°S. In some important coastal upwelling sites primary production is reduced. This is due to a complex balance between nutrient availability, nutrient use efficiency, as well as eddy- and wind-driven factors. Mesoscale activity induces a net offshore transport of inorganic nutrients, thus reducing primary production in the coastal upwelling region. Wind mixing, in general disadvantageous for primary producers, leads to shorter residence times in the southern and central coastal zones. Overall, instead of a proportional enhancement in primary production due to increased winds, the NHCS becomes only 5% more productive (+5 mol C m -2 year -1 ), 10% less limited by nutrients and 15% less efficient due to eddy-driven effects. It is found that regions with a initial strong nutrient limitation are more efficient in terms of nutrient assimilation which makes them more resilient in face of the acceleration of the upwelling circulation. © 2018 John Wiley & Sons Ltd.

On the subduction of oxygenated surface water in submesoscale cold filaments off Peru.

NASA Astrophysics Data System (ADS)

Thomsen, Soeren; Kanzow, Torsten; Colas, Francois; Echevin, Vincent; Krahmann, Gerd

2015-04-01

The Peruvian upwelling regime is characterized by pronounced submesoscale variability including filaments and sharp density fronts. Submesoscale frontal processes can drive large vertical velocities and enhance vertical tracer fluxes in the upper ocean. The associated high temporal and spatial variability poses a large challenge to observational approaches targeting submesoscale processes. In this study the role of submesoscale processes for both the ventilation of the near-coastal oxygen minimum zone off Peru and the physical-biogeochemical coupling at these scales is investigated. For our study we use satellite based sea surface temperature measurements in combination with multiple high-resolution glider observations of temperature, salinity, oxygen and chlorophyll fluorescence carried out in January and February 2013 off Peru near 14°S during active upwelling. Additionally, high-resolution regional ocean circulation model outputs (ROMS) are analysed. At the beginning of our observations a previously upwelled, productive and highly oxygenated body of water is found within the mixed layer. Subsequently, a cold filament forms and the waters are moved offshore. After the decay of the filament and the relaxation of the upwelling front, the oxygen enriched surface water is found within the previously less oxygenated thermocline suggesting the occurrence of frontal subduction. A numerical model simulation is used to analyse the evolution of passive tracers and Lagrangian floats within several upwelling filaments, whose vertical structure and hydrographic properties agree well with the observations. The simulated temporal evolution of the tracers and floats support our interpretation that the subduction of previously upwelled water indeed occurs within cold filaments off Peru. Filaments are common features within eastern boundary upwelling systems, which all encompass large oxygen minimum zones. However, most state of-the-art large and regional scale physical-biogeochemical ocean models do not resolve submesoscale filaments and the associated downward transport of oxygen and other solutes. Even if the observed subduction event only reaches into the still oxygenated thermocline the associated ventilation mechanism likely influences the shape and depth of the upper boundary of oxygen minimum zones, which would probably be even shallower without this process.

Phytoplankton community and environmental correlates in a coastal upwelling zone along western Taiwan Strait

NASA Astrophysics Data System (ADS)

Wang, Yu; Kang, Jian-hua; Ye, You-yin; Lin, Geng-ming; Yang, Qing-liang; Lin, Mao

2016-02-01

Upwelling system in western Taiwan Strait is important for facilitating the fishery production. This study investigated hydro-chemical properties, phytoplankton biomass, phytoplankton species composition, three-dimensional (horizontal, vertical and transect) distribution of phytoplankton abundance, as well as phytoplankton annual variation and the correlation of phytoplankton community with the upwelling of underlying current and nutrients according to samples of Fujian-Guangdong coastal upwelling zone in western Taiwan Strait from August 27 to September 8, 2009. The results manifest that the nutrient-rich cold and high salinity current on the continental shelf of South China Sea upwells to the Fujian-Guangdong coastal waters through Taiwan Bank and the surging strength to surface is weak while strong at 30-m layer. The thermohaline center of coastal upwelling shifts to the east of Dongshan Island and expanded to offshore waters in comparison with previous records. A total of 137 phytoplankton species belonging to 59 genera in 4 phyla are identified excluding the unidentified species. Diatom is the first major group and followed by dinoflagellate. Cyanobacteria mainly composed by three Trichodesmium species account for a certain proportions, while Chrysophyta are only found in offshore waters. The dominant species include Thalassionema nitzschioides, Pseudo-nitzschia pungens, Thalassionema frauenfeldii, Pseudo-nitzschia delicatissima, Rhizosolenia styliformis, Chaetoceros curvisetus, Diplopsalis lenticula and Trichodesmium thiebautii. Phytoplankton community mainly consists of eurythermal and eurytopic species, followed by warm-water species, tropic high-salinity species and oceanic eurythermic species in order. Phytoplankton abundance ranges from 1.00 × 102 ind./L ~ 437.22 × 102 ind./L with an average of 47.36 × 102 ind./L. For vertical distribution, maximum abundance is found at 30 m-depth and the surface comes second. Besides, the abundance below 30 m decreases with increasing water depth. The horizontal and transect distribution of phytoplankton abundance are both displayed in patchy size, and the peak area is the offshore waters from the east of Dongshan Island to the south of Zhangpu which is basically coincident with the thermohaline center of the upwelling, but the distribution range of phytoplankton high abundance is expanded out of the upwelling center. Phytoplankton abundances on 3 transects in offshore waters from the east of Dongshan Island to the south of Zhangpu are higher than that of nearshore waters and the other 5 transects. Moreover, the underlying current is accompanied by shade flora so as to offer a certain evidence for the presence of upwelling. Phytoplankton abundance at 30 m-depth and bottom both present low significant positive correlation with phosphate, while there are not significant correlations between the content of inorganic nitrogen and phytoplankton abundance in all water layers. The intensity and range of Fujian-guangdong coastal upwelling has a regulating effect on the species succession, abundance distribution and the location of phytoplankton peak area.

Dynamics of Black Band Disease in a Diploria strigosa population subjected to annual upwelling on the northeastern coast of Venezuela

NASA Astrophysics Data System (ADS)

Rodríguez, S.; Cróquer, A.

2008-06-01

Temporal variability of Black Band Disease (BBD) prevalence, incidence, recurrence, recovery and virulence was estimated in a Diploria strigosa population from an upwelling zone of Venezuela, for 1 year between August 2004 and August 2005. The sampling spanned both upwelling and non-upwelling seasons, and included three samplings, roughly 60 days apart, within each season. The negative effects of BBD epizootiology in the sampling population (El Mercado reef) were positively correlated with sea surface temperature (taken as an upwelling estimator). Disease prevalence, incidence and recurrence decreased significantly during upwelling, and the recovery rate increased. Contrary to expectations, tissue mortality did not decrease significantly during the upwelling season, remaining at 1.2 ± 0.7 mm day-1. BBD prevalence, and the ensuing rates of tissue mortality were higher than values previously reported for other Caribbean reefs, even during upwelling episodes, suggesting that nutrient enrichment of the local waters by upwelling counteracts the expected reductions of the disease prevalence and virulence due to the lower temperature. Colonies which had previously been infected with BBD were up to six times more susceptible to new infections than those which were not infected during the preceding 7 months, suggesting that the infected colonies never healed completely. The high variability between tissue mortality values among coral colonies also suggests that overall host health-status may alter susceptibility to BBD infections.

Coupled ice-ocean dynamics in the marginal ice zones Upwelling/downwelling and eddy generation

NASA Technical Reports Server (NTRS)

Hakkinen, S.

1986-01-01

This study is aimed at modeling mesoscale processes such as upwelling/downwelling and ice edge eddies in the marginal ice zones. A two-dimensional coupled ice-ocean model is used for the study. The ice model is coupled to the reduced gravity ocean model through interfacial stresses. The parameters of the ocean model were chosen so that the dynamics would be nonlinear. The model was tested by studying the dynamics of upwelling. Wings parallel to the ice edge with the ice on the right produce upwelling because the air-ice momentum flux is much greater than air-ocean momentum flux; thus the Ekman transport is greater than the ice than in the open water. The stability of the upwelling and downwelling jets is discussed. The downwelling jet is found to be far more unstable than the upwelling jet because the upwelling jet is stabilized by the divergence. The constant wind field exerted on a varying ice cover will generate vorticity leading to enhanced upwelling/downwelling regions, i.e., wind-forced vortices. Steepening and strengthening of vortices are provided by the nonlinear terms. When forcing is time-varying, the advection terms will also redistribute the vorticity. The wind reversals will separate the vortices from the ice edge, so that the upwelling enhancements are pushed to the open ocean and the downwelling enhancements are pushed underneath the ice.

A study on the seasonal variability of upwelling and its effects on physical parameters in Arabian Sea

NASA Astrophysics Data System (ADS)

Shukla, Rohit Kumar; Shaji, Chithra; Ojha, Satya P.; Kumar, Pankaj

2017-04-01

The upwelling in Arabian Sea is an important phenomenon, mainly occurring along the southwest coast of India during summer monsoon, which increases the biological productivity in the region. The south west coast of Arabian sea region accounts for about 53% of fish yield of the total fish production in Arabian Sea, thus it is imperative to study and understand the process of upwelling in this region. To study the upwelling features in southwest coast of India, monthly Ekman mass transport is estimated using analyzed wind and derived products from Oceansat-II scatterometer data. Seasonal variability of Ekman mass transport has been analyzed to study the occurrences of coastal upwelling in this region. Results show prominent region of upwelling along southwest coast of India is between 7° and 15° N. Transport estimate demonstrate that the strong offshore Ekman mass transport, as high as -2000 kg/m/s, was observed during summer monsoon months due to favorable wind conditions. Very weak offshore transport, as low as -200 kg/m/s, was observed during pre-monsoon months as winds were weak and spatially variable. Moderate offshore transport, up to -750 kg/m/s, was observed during winter monsoon months. The upwelling associated ocean surface features such as Sea-surface temperature (SST, from AVHRR), chlorophyll concentration (AQUA-MODIS), wind stress curl derived from Oceansat-II and sea surface salinity (SSS, from Aquarius) were examined to demonstrate the spatial and temporal evolution of upwelling in this region. With the advancement of the summer monsoon and upwelling, the monthly mean SST range reaches up to 26-27°C (August - September) from about 29-30°C (April - May). The monthly mean Chlorophyll concentration reaches up to 25-30 mg/m3 (August-September) from 0.1-0.2 mg/m3 (January-February). The monthly SSS which was observed to be about 34 psu (December 2102- January 2013) reaches to 36.5 psu (August-September). Analysis of SST from different sources suggests that the occurrence of a mini-cold pool (MCP) off the southern tip of India (STI) is a persistent phenomenon which occurs during both the summer and the winter monsoon seasons. The dynamics which governs the occurrence of MCP during the summer monsoon season is mainly due to upwelling, advection of the cold upwelled water from the western Arabian Sea and the southwest coast of India. Since, Somalia upwelling is an established fact, hence, we estimate upwelling only on southwest coast of India to understand the genesis of MCP. Results show that the genesis of MCP off STI starts by June and peaks in August and the SST attains a value as low as 26.0 °C, essentially due to upwelling and advection of upwelled water from the Somalia region along with upwelled water from southwest coast of India.

Opening Pandora's Box: The impact of open system modeling on interpretations of anoxia

NASA Astrophysics Data System (ADS)

Hotinski, Roberta M.; Kump, Lee R.; Najjar, Raymond G.

2000-06-01

The geologic record preserves evidence that vast regions of ancient oceans were once anoxic, with oxygen levels too low to sustain animal life. Because anoxic conditions have been postulated to foster deposition of petroleum source rocks and have been implicated as a kill mechanism in extinction events, the genesis of such anoxia has been an area of intense study. Most previous models of ocean oxygen cycling proposed, however, have either been qualitative or used closed-system approaches. We reexamine the question of anoxia in open-system box models in order to test the applicability of closed-system results over long timescales and find that open and closed-system modeling results may differ significantly on both short and long timescales. We also compare a scenario with basinwide diffuse upwelling (a three-box model) to a model with upwelling concentrated in the Southern Ocean (a four-box model). While a three-box modeling approach shows that only changes in high-latitude convective mixing rate and character of deepwater sources are likely to cause anoxia, four-box model experiments indicate that slowing of thermohaline circulation, a reduction in wind-driven upwelling, and changes in high-latitude export production may also cause dysoxia or anoxia in part of the deep ocean on long timescales. These results suggest that box models must capture the open-system and vertically stratified nature of the ocean to allow meaningful interpretations of long-lived episodes of anoxia.

Visible to Near-infrared Spectral Reflectance, NGEE-Arctic Tram, Barrow, Alaska, 2015-2017

DOE Office of Scientific and Technical Information (OSTI.GOV)

Meng, Ran; McMahon, Andrew; Rogers, Alistair

Canopy spectral reflectance collected from the NGEE-Arctic automated tram platform using a PP-Systems UniSpec-DC spectrometer. Downwelling radiance was measured using a 2 meter fiber optic cable connected to a cosine diffuser. Upwelling (i.e. reflected) radiance was measured using a 2 meter cable connected to a 12 degree field-of-view (FOV) lens. Canopy reflectance was calculated using the ratio of upwelling to downwelling radiance measured over a 99.99% reflectance Spectralon standard measured at the start of each measurement set.

Late Pliocene Sea Surface Temperature contrast in the Benguela upwelling as recorded by foraminiferal Mg/Ca and alkenones

NASA Astrophysics Data System (ADS)

Leduc, G.; Garbe-Schoenberg, C.; Regenberg, M.; Schneider, R. R.

2011-12-01

Alkenone-based sea surface temperature (SST) in the Benguela region reveal quite warm and stable conditions between ~3.0 and 2.0 Ma, coinciding with a period of very high diatom production as revealed by mass accumulation rates (MAR) of biogenic opal (Marlow et al., 2000, Science; Etourneau et al., 2009, Geology). Such a pattern is difficult to believe with the general perception that high diatom productivity results from strong coastal upwelling associated with pronounced Surface Ocean cooling. Therefore we assessed whether different paleothermometers from the same sedimentary archive (i.e. ODP site 1082) provide different results for the Namibian upwelling system by performing a comparison between alkenone-derived temperatures and those from the planktonic foraminifera Globigerinoides bulloides, a species known to proliferate in upwelling regions. We used laser ablation inductively coupled plasma mass spectrometry (LA-ICP-MS) for multiple in situ determination of Mg/Ca in single tests of G. bulloides. These measurements allow monitoring of contaminant phases linked to Mg-rich clays (monitored by Al/Ca) and Mn-rich foraminiferal tests, which contain substantial high Mg (monitored by Mn/Ca) (Pena et al., 2005, G-cubed). Moreover, using LA-ICP-MS measurements for Mg/Ca ratios on single specimens allows estimating the range of seasonal or vertical temperature variability by considering the intra-sample variance in the SST estimated from different specimens and/or different chambers within the same specimen. When compared to the Pliocene alkenone SST record, the Mg/Ca-ratios imply SSTs colder by ~10°C. A similar contrast in SST estimates between these two proxies was reported for the last 20 ka in the same region (Farmer et al., 2005, Paleoceanography). Such discrepancy can be reconciled by assuming that the two SST proxies are either strongly skewed towards warm (non-upwelling) and cold (upwelling) conditions for alkenones and Mg/Ca SST, respectively, or by the possibility that G. bulloides captures a temperature signal integrated over a larger water depth range. If representative for a specific season, downcore SST estimates from the two proxies may provide reliable evidences for changes in the seasonal temperature contrasts and thus upwelling intensity during the Pliocene. Even if the absolute temperature contrasts recorded between these two proxies have not dramatically changed between the Pliocene and Late Quaternary, the range of SST estimates between single specimen Mg/Ca values may hint to changes in past upwelling intensity. Accordingly, the scattering of intra-sample Mg/Ca values tends to increase together with the opal MAR, probably reflecting enhanced temperature contrasts at times of intense upwelling and diatom production which occurred during the cold season, one feature that is not captured by alkenone SST records.

Changes in monsoon-driven upwelling in the South China Sea over glacial Terminations I and II: a multi-proxy record

NASA Astrophysics Data System (ADS)

Sadatzki, Henrik; Sarnthein, Michael; Andersen, Nils

2016-06-01

Upwelling intensity in the South China Sea has changed over glacial-interglacial cycles in response to orbital-scale changes in the East Asian Monsoon. Here, we evaluate new multi-proxy records of two sediment cores from the north-eastern South China Sea to uncover millennial-scale changes in winter monsoon-driven upwelling over glacial Terminations I and II. On the basis of U/Th-based speleothem chronology, we compare these changes with sediment records of summer monsoon-driven upwelling east of South Vietnam. Ocean upwelling is traced by reduced (UK'37-based) temperature and increased nutrient and productivity estimates of sea surface waters (δ13C on planktic foraminifera, accumulation rates of alkenones, chlorins, and total organic carbon). Accordingly, strong winter upwelling occurred north-west of Luzon (Philippines) during late Marine Isotope Stage 6.2, Heinrich (HS) and Greenland stadials (GS) HS-11, GS-26, GS-25, HS-1, and the Younger Dryas. During these stadials, summer upwelling decreased off South Vietnam and sea surface salinity reached a maximum suggesting a drop in monsoon rains, concurrent with speleothem records of aridity in China. In harmony with a stadial-to-interstadial see-saw pattern, winter upwelling off Luzon in turn was weak during interstadials, in particular those of glacial Terminations I and II, when summer upwelling culminated east of South Vietnam. Most likely, this upwelling terminated widespread deep-water stratification, coeval with the deglacial rise in atmospheric CO2. Yet, a synchronous maximum in precipitation fostered estuarine overturning circulation in the South China Sea, in particular as long as the Borneo Strait was closed when sea level dropped below -40 m.

(abstract) Seasonal Variability in Coastal Upwelling: A Comparison of Four Coastal Upwelling Sites from Space

NASA Technical Reports Server (NTRS)

Carr, Mary-Elena

1996-01-01

Coastal upwelling of subsurface nutrient-rich water occurs along the eastern boundary of the ocean basins and leads to high primary production and fish catches. In this study satellite observations are used to compare the seasonal cycle in wind forcing and in the oceanic and biological response of the major coastal upwelling regions associated with the Canary, Benguela, California, and Humboldt Currents.

Linking the Modern and Recent Record of Cabo Frio Upwelling with Local Climate and Biogeochemical Processes in Hypersaline Coastal Lagoons, Região dos Lagos, Rio de Janeiro, Brazil

NASA Astrophysics Data System (ADS)

McKenzie, J. A.; Nascimento, G. S.; Albuquerque, A. L.; Belem, A. L.; Carreira, R.; Eglinton, T. I.; Vasconcelos, C.

2015-12-01

A unique marine and lagoonal system along the coast east of Rio de Janeiro is being investigated to understand the impact of climatic variability on the South Atlantic carbon cycle and biomineralisation processes involved in carbonate precipitation in the hypersaline coastal lagoons. The region is dominated by a semi-arid microclimate attributed to the local coastal upwelling phenomenon near Cabo Frio. The intensity of the upwelling affects the hydrology of the annual water and biogeochemical cycles in the lagoons, as well as biogeochemical signals of environmental change recorded in both onshore and offshore sediments. Preliminary results of δ18O and δD values of water samples collected monthly in Lagoa Vermelha and Brejo do Espinho from 2011 to 2014 show lower values for waters corresponding to the wet season, reflecting increased input of meteoric water. The higher values for waters collected during the dry season reflect the greater amount of evaporation with increased seasonal aridity. Radiocarbon dating of Holocene marine and lagoonal cores indicates that Mg-carbonate precipitation in the lagoons is associated with high evaporation. Modern field observations for the last 3 years suggest that the amount of carbonate precipitation is correlated with evaporitic conditions associated with the upwelling phenomenon. A calibration study of hydrogen isotopic fractionation in the modern lagoons is underway to define a relationship between δDlipid of suspended particles and δDwater of associated water. This isotopic relationship will be applied to material obtained in cores from the lagoons. Offshore cores will be studied using well-tested paleotemperature proxies to evaluate the intensity of the upwelling during the Holocene. In summary, linking the coastal upwelling with the lagoonal hydrology has the potential to furnish important insights about the relationship between the local climate and paleoceanographic circulation associated with the regional carbon cycle.

Upwelling Measurement Issues at the CERES Ocean Validation Experiment (COVE)

NASA Astrophysics Data System (ADS)

Fabbri, B. E.; Schuster, G. L.; Denn, F. M.; Arduini, R. F.; Madigan, J. J.; Rutan, D. A.

2016-12-01

The Clouds and the Earth's Radiant Energy System (CERES) satellite measures both solar-reflected and Earth-emitted radiation from the Earth's surface to the top of the atmosphere. One surface validation site is located at Chesapeake Light Station, approximately 25 kilometers east of Virginia Beach, Virginia (coordinates: 36.90N, 75.71W). In 1999, the CERES Ocean Validation Experiment (COVE) was established at Chesapeake Light Station. COVE is in its 17th year collecting radiometric and meteorological data. Other measurements over this time period include aerosol optical depth, water leaving radiance, precipitable water vapor and more. The issues we are trying to resolve for the upwelling flux are two-fold. First, there is the "shadow effect". In the morning, the shadow of the tower appears on the water in the field of view underneath the shortwave (SW) and longwave (LW) upwelling instruments. An attempt to understand the shading effect is made by separating the data into "shaded" and "unshaded" time periods using the Solar Azimuth (SA) angle. SA < 180 degrees are considered shaded, and SA > 180 degrees are considered unshaded. Upwelling SW shaded and unshaded datasets differ by a maximum of 9.5 W/m2 and a minimum of -0.7 W/m2 with the delta mean resulting in 3.6 W/m2. Upwelling LW shaded and unshaded datasets differ by a maximum of 8.0 W/m2 and a minimum of 1.0 W/m2 with the delta mean resulting in 3.7 W/m2. The second issue is the "tower radiating effect" which is especially noticeable on clear, sunny days. During these days, the tower tends to heat up and radiate extra heat energy that is measured by the LW instrument. We compare Infrared Radiation Thermometer (IRT) measurements to Precision Infrared Radiometer (PIR) measurements and make a case for using IRT measurements as upwelling LW.

Characterization of the structure and cross-shore transport properties of a coastal upwelling filament using three-dimensional finite-size Lyapunov exponents

NASA Astrophysics Data System (ADS)

Bettencourt, João. H.; Rossi, Vincent; Hernández-García, Emilio; Marta-Almeida, Martinho; López, Cristóbal

2017-09-01

The three-dimensional structure, dynamics, and dispersion characteristics of a simulated upwelling filament in the Iberian upwelling system are analyzed using Lagrangian tools. We used a realistic regional simulation of the western Iberian shelf which is concomitant with an in situ oceanographic campaign that surveyed the area. We compute 3-D fields of finite-size Lyapunov exponents (FSLE) from 3-D velocity fields and extract the field's ridges to study the spatial distribution and temporal evolution of the Lagrangian Coherent Structures (LCSs) evolving around the filament. We find that the most intense curtain-like LCSs delimit the boundaries of the whole filamentary structure whose general properties match well the observations. The filament interior is characterized by small dispersion of fluid elements. Furthermore, we identify a weak LCS separating the filament into a warmer vein and a colder filament associated with the interaction of a mesoscale eddy with the upwelling front. The cold upwelled water parcels move along the filament conserving their density. The filament itself is characterized by small dispersion of fluid elements in its interior. The comparison of LCSs with potential temperature and salinity gradient fields shows that the outer limits of the filament coincide with regions of large hydrographic gradients, similar to those observed, explaining the isolation of the interior of the filament with the surrounding waters. We conclude that the Lagrangian analysis used in this work is useful in explaining the dynamics of cross-shore exchanges of materials between coastal regions and the open ocean due to mesoscale processes.

Biological and physical oceanographic observations pertaining to the trawl fishery in a region of persistent coastal upwelling

NASA Technical Reports Server (NTRS)

Howe, J. T.; Gibson, D. B.; Evans, T. O.; Breaker, L.; Wrigley, R. C.; Broenkow, W. W.

1981-01-01

An upwelling episode in the Point Sal region of the central California coast is examined by using data obtained by a data buoy. The episodes was interrupted by the abrupt abatement of the strong wind which promotes coastal upwelling. The mean hourly upwelling index is calculated to be higher than the 20 year mean monthly value. During 3 days of light wind commercial bottom trawl operations were possible. Shipboard estimates of chlorophyll content in surface waters during trawling show the high concentrations that are indicative of a rich biomass of phytoplankton, a result of the upwelling episode. Satellite imagery shows the extent of the upwelling water to be of the order of 100 km offshore; the result of many upwelling episodes. Shipboard echo sounder data show the presence of various delmersal species and of zooplakton; the latter graze on the phytoplankton in the upper euphotic layers. The fish catch data are recorded according to species for 2 days of trawling, and the catch per trawl hour is recorded.

Characterizing the Phytoplankton Community of the South China Sea

NASA Astrophysics Data System (ADS)

Aleman, M.; Subramaniam, A.; Hay, I.

2016-12-01

The South China Sea (SCS) is a semi-enclosed tropical basin that receives nutrients from two main sources: coastal upwelling and river runoff from the surrounding countries. The southwest (SW) summer monsoon that occurs between March and September drives upwelling off the coast of Vietnam, a rarity compared to most upwelling systems that are driven by eastern boundary current systems. The upwelling in the SCS and the intensity of the SW monsoon are sensitive to climate variability and are affected by phenomenon such as El Niño Southern Oscillation (ENSO) and Indian Ocean Dipole (IOD). The size and location of the Mekong River plume also varies from year to year due to the variation in rainfall and wind strength of the monsoon. The riverine input is also influenced by anthropogenic activity such as agriculture, damming, and land-use changes. Different nutrients are supplied from these two main sources and in different quantities, and affect the structure of the phytoplankton community. Phytoplankton comprise the base of the food web, supporting the growth of higher organisms and ultimately support fisheries. We need to understand how the supply of different nutrients alters the phytoplankton community of the SCS. We sampled 22 stations along the coast of Vietnam aboard the R/V Falkor of the Schmidt Ocean Institute during the pre-monsoon season. High performance liquid chromatography (HPLC) and flow cytometric techniques will be used to characterize the phytoplankton community. The relationship between the different water masses, nutrient sources, and phytoplankton community found in the SCS will be presented.

Reconstruction of the Mesoscale Velocity Shear Seaward of Coastal Upwelling Regions from the Refraction of the Surface Wave Field

NASA Technical Reports Server (NTRS)

Flament, Pierre; Graber, Hans C.; Halpern, D.; Holt, B.

1996-01-01

The objective of this project is to study fronts that develop at the boundary between cold water recently upwelled to the surface through Ekman divergence, and warmer surrounding waters. This specific objective was suggested by studying the small scale structure of upwelling fronts (coastal, island, and equatorial) through shipboard surveys and infrared satellite images. Constraints on the shuttle equator crossing imposed by other land sites precluded a coverage of the area targeted in the initial SIR-C proposal, the California Current. The site was then relocated to the Equatorial Pacific upwelling tongue, that can be satisfactorily imaged for a wide range of longitudes of the equator crossing. Some limited data was nevertheless obtained over coastal upwelling off California in 1989, using the JPL AIRSAR in multifrequency mode, and over island upwelling off Hawaii in 1990, using the radar in along-track interferometric mode.

A long history of equatorial deep-water upwelling in the Pacific Ocean

NASA Astrophysics Data System (ADS)

Zhang, Yi Ge; Pagani, Mark; Henderiks, Jorijntje; Ren, Haojia

2017-06-01

Cold, nutrient- and CO2-rich waters upwelling in the eastern equatorial Pacific (EEP) give rise to the Pacific cold tongue. Quasi-periodic subsidence of the thermocline and attenuation in wind strength expressed by El Niño conditions decrease upwelling rates, increase surface-water temperatures in the EEP, and lead to changes in regional climates both near and far from the equatorial Pacific. EEP surface waters have elevated CO2 concentrations during neutral (upwelling) or La Niña (strong upwelling) conditions. In contrast, approximate air-sea CO2 equilibrium characterizes El Niño events. One hypothesis proposes that changes in physical oceanography led to the establishment of a deep tropical thermocline and expanded mixed-layer prior to 3 million years ago. These effects are argued to have substantially reduced deep-water upwelling rates in the EEP and promoted a "permanent El Niño-like" climate state. For this study, we test this supposition by reconstructing EEP "excess CO2" and upwelling history for the past 6.5 million years using the alkenone-pCO2 methodology. Contrary to previous assertions, our results indicate that average temporal conditions in the EEP over the past ∼6.5 million years were characterized by substantial CO2 disequilibrium and high nutrient delivery to surface waters - characteristics that imply strong upwelling of deep waters. Upwelling appears most vigorous between ∼6.5 to 4.5 million years ago coinciding with high accumulation rates of biogenic material during the late Miocene - early Pliocene "biogenic bloom".

Far-reaching transport of Pearl River plume water by upwelling jet in the northeastern South China Sea

NASA Astrophysics Data System (ADS)

Chen, Zhaoyun; Pan, Jiayi; Jiang, Yuwu; Lin, Hui

2017-09-01

Satellite images from the Moderate Resolution Imaging Spectroradiometer (MODIS) show that there was a belt of turbid water appearing along an upwelling front near the Chinese coast of Guangdong, and indicate that the turbid water of the Pearl River plume water could be transported to a far-reaching area east of the Taiwan Bank. Numerical modeling results are consistent with the satellite observations, and reveal that a strong jet exists at the upwelling front with a speed as high as 0.8 m s- 1, which acts as a pathway for transporting the high-turbidity plume water. The dynamical analysis suggests that geostrophic equilibrium dominates in the upwelling front and plume areas, and the baroclinicity of the upwelling front resulting from the horizontal density gradient is responsible for the generation of the strong jet, which enhances the far-reaching transport of the terrigenous nutrient-rich water of the Pearl River plume. Model sensitivity analyses also confirm that this jet persists as long as the upwelling front exists, even when the wind subsides and becomes insignificant. Further idealized numerical model experiments indicate that the formation and persistence of the upwelling front jet depend on the forcing strength of the upwelling-favorable wind. The formation time of the jet varies from 15 to 158 h as the stress of the upwelling-favorable wind changes from 0.2 to 0.01 N m- 2. With the persistent transport of the nutrient-rich plume water, biophysical activities can be promoted significantly in the far-reaching destination area of the oligotrophic water.

Ore deposits in Africa and their relation to the underlying mantle

NASA Technical Reports Server (NTRS)

Liu, H.-S.

1981-01-01

African magmatism is largely related to the tensional stress regimes of the crust which are induced by the hotter upwelling mantle rocks. These mantle rocks may provide emanating forces and thermal energy for the upward movements of primary ore bodies with fluid inclusions in the tensional stress regimes of the crust. In this paper, the Goddard Earth Gravity Model is used to calculate a detailed subcrustal stress system exerted by mantle convection under Africa. The resulting system is found to be correlated with the African metallogenic provinces. Recognition of the full spectrum of ore deposits in Africa that may be associated with the hotter upwelling mantle rocks has provided an independent evidence to support the hypothesis of mantle-derived heat source for ore deposits.

Biogeochemical cycling in the ocean. Part 1: Introduction to the effects of upwelling along the west coast of North America

NASA Technical Reports Server (NTRS)

Howe, John T.

1986-01-01

Coastal upwelling is examined as it relates to the cycling of chemical species in coastal waters along the west coast of North America. The temporal and spatial features of upwelling phenomena in the Eastern boundary regions of the North Pacific Ocean are presented and discussed in terms of upwelling episodes. Climate conditions affecting upwelling include: thermal effects, wind-induced shear stress which moves surface layers, and the curl of the wind stress vector which is thought to affect the extent and nature of upwelling and the formation of offshore convergent downwelling fronts. These effects and the interaction of sunlight and upwelled nutrients which result in a biological bloom in surface waters is modeled analytically. The roles of biological and chemical species, including the effects of predation, are discussed in that context, and relevant remote sensing and in situ observations are presented. Climatological, oceanographic, biological, physical, chemical events, and processes that pertain to biogeochemical cycling are presented and described by a set of partial differential equations. Simple preliminary results are obtained and are compared with data. Thus a fairly general framework has been laid where the many facets of biogeochemical cycling in coastal upwelled waters can be examined in their relationship to one another, and to the whole, to whatever level of detail or approximation is warranted or desired.

Spatial variability of Spanish sardine (Sardinella aurita) abundance as related to the upwelling cycle off the southeastern Caribbean Sea

PubMed Central

Cárdenas, Juan José; Achury, Alina; Astor, Yrene

2017-01-01

The Sardinella aurita fishery off northeastern Venezuela, region of seasonal wind-driven coastal-upwelling, accounts for 90% of the Caribbean Sea small pelagic catch. This law-protected artisanal fishery takes place up to ~10 km offshore. The spatial distribution, number of schools, and biomass of S. aurita were studied using eight hydro-acoustic surveys (1995–1998). The study included the analysis of satellite-derived sea surface temperature and chlorophyll-a. Surveys were grouped by strong, weak, and transitional upwelling seasons. Relationships between these observations were analyzed using Generalized Additive Models. Results show that during the primary upwelling season (January-May) sardines were widely distributed in upwelling plumes that extended up to 70 km offshore. In the other hand, during the weak upwelling season (September-October) higher sardine densities were found within 10 Km off the coastal upwelling foci. The number of small pelagic schools was directly correlated with small pelagic densities; however, regardless of the season, higher numbers of small pelagic schools were always closer to the shoreline, especially during warm conditions. These two behaviors increase the availability and catchability of sardines for the artisanal fishery during the warm season, regardless of the total stock size. Using this evidence, we pose the hypothesis that the collapse of the regional S. aurita fishery in 2005 was due to a combination of stressful habitat conditions sustained since 2004. These included bottom-up factors due to food scarcity caused by weak upwelling, combined with top-down stress due to overfishing, as sardines accumulated in narrow diminished upwelling plumes located close to the coast. The increased catchability within easily accessible upwelling foci led to the demise of this biological resource, which as of 2014 had not yet recovered. Environmental conditions affecting the sardine habitat needs to be taken into account for the management of this stock. For example, during years with weak upwelling, special measures should be taken during the warm season on the second half of the year to avoid further pressure on the stock. PMID:28654685

Dehumidification of Iberia by enhanced summer upwelling

NASA Astrophysics Data System (ADS)

Miranda, P. M.; Costa, V.; Nogueira, M.; Semedo, A.

2015-12-01

Dehumidification of Iberia by enhanced summer upwelling Miranda PMA, Costa V, Semedo AIDL, Faculdade de Ciências, University of LisbonA 24-year simulation of the recent Iberian climate, using the WRF model at 9km resolution forced by ERA-Interim reanalysis (1989-2012), is analysed for the decadal evolution of the upwelling forcing coastal wind and for column integrated Precipitable water vapour (PWV). Results indicate that, unlike what was found by Bakun et al. (2009) for the Peruvian region, a statistically significant trend in the upwelling favourable (northerly) wind has been accompanied by a corresponding decrease in PWV, not only inland but also over the coastal waters. Such increase is consistent with a reinforced northerly coastal jet in the maritime boundary layer contributing to atmospheric Ekman pumping of dry continental air into the coastal region. Diagnostics of the prevalence of the Iberian thermal low following Hoinka and Castro (2003) also show a positive trend in its frequency during an extended summer period (April to September). These results are consistent with recent studies indicating an upward trend in the frequency of upwelling in SW Iberia (Alves and Miranda 2013), and may be relevant for climate change applications as an increase in coastal upwelling (Miranda et al 2013) may lead to substantial regional impacts in the subtropics. Aknowledgements: Study supported by FCT Grant RECI/GEO-MET/0380/2012Alves JMR, Miranda PMA (2013) Variability of Iberian upwelling implied by ERA-40 and ERA-Interim reanalyses, Tellus A 2013, http://dx.doi.org/10.3402/tellusa.v65i0.19245.Bakun et al (2010) Greenhouse gas, upwelling-favorable winds, and the future of coastal ocean upwelling ecosystems, Global Change Biology, doi: 10.1111/j.1365-2486.2009.02094.xHoinka KP, Castro M (2003) The Iberian Peninsula thermal low. QJRMS, 129, 1491- 1511, doi: 10.1256/qj.01.189.Miranda et al (2013) Climate change and upwelling: response of Iberian upwelling to atmospheric forcing in a regional climate scenario. Climate Dynamics, doi: 10.1007/s00382-012-1442-9.

Microplankton biomass and diversity in the Vietnamese upwelling area during SW monsoon under normal conditions and after an ENSO event

NASA Astrophysics Data System (ADS)

Loick-Wilde, Natalie; Bombar, Deniz; Doan, Hai Nhu; Nguyen, Lam Ngoc; Nguyen-Thi, Anh Mai; Voss, Maren; Dippner, Joachim W.

2017-04-01

Investigating microplankton biomass and diversity under different climatological conditions is key to the understanding of cascading effects of climate change on nutrient cycles and biological productivity. Here we have used data collected during two contrasting summers along the coast of Viet Nam to show how climatological-driven changes can have a significant influence on the distribution of microplankton communities and their biomass via its impact on nutrient concentrations in the water column. The first summer in July 2003 followed a weak El-Nino Southern Oscillation (ENSO) event and was characterized by weak coastal upwelling, in the second summer during July 2004, upwelling was normal. Very low silicate (SiO4) concentrations and SiO4:DIN ratios characterized the source water mass for upwelling in July 2004, and dynamic SiO4 to dissolved inorganic nitrogen ratios (SiO4:DIN) mainly below the Redfield-Brzezinski ratio and DIN to phosphate ratios (DIN:PO43-) below the Redfield ratio were a common feature off Viet Nam. Much higher particle concentrations and PSi/PC ratios during normal upwelling revealed major changes in the microplankton community structure among summers. Small dinoflagellates (10-20 μm) prevailed ubiquitously during reduced upwelling. During normal upwelling, the diatom Rhizosolenia sp. dominated the cell-carbon biomass in the silicate poor upwelling waters. Trichodesmium erythraeum dominated in the Mekong-influenced and nutrient depleted offshore waters, where it co-occurred with Rhizosolenia sp. Both species were directly associated with the much higher primary production (PP) and N2 fixation rates that were quantified in earlier studies, as well as with much higher diversities at these offshore sites. Along the coast, the correlation between Rhizosolenia sp. and PP rates was less clear and the factors regulating the biomass of Rhizosolenia sp. in the upwelling waters are discussed. The very low silicate concentrations in the source water mass for upwelling and the offshore deflection of the Mekong river plume likely triggered the observed ecological differences in the microplankton communities off Viet Nam in the normal upwelling season compared to the post ENSO conditions.

Interactions between trophic levels in upwelling and non-upwelling regions during summer monsoon

NASA Astrophysics Data System (ADS)

Malik, A.; Fernandes, C. E. G.; Gonsalves, M.-J. B. D.; Subina, N. S.; Mamatha, S. S.; Krishna, K.; Varik, S.; Kumari, R.; Gauns, M.; Cejoice, R. P.; Pandey, S. S.; Jineesh, V. K.; Kamaleson, A. S.; Vijayan, V.; Mukherjee, I.; Subramanyan, S.; Nair, S.; Ingole, B.; LokaBharathi, P. A.

2015-01-01

Coastal upwelling is a regular phenomenon occurring along the southwest coast of India during summer monsoon (May-September). We hypothesize that there could be a shift in environmental parameters along with changes in the network of interactions between bacteria, phytoplankton, and zooplankton in upwelling and non-upwelling regions. During cruise # 267 on FORV Sagar Sampada, water samples were analysed for environmental and biological parameters from two transects, one upwelling region off Trivandrum (TVM) (8°26‧N, 76°20‧E-8°30‧N, 76°50‧E), and the other non-upwelling region off Calicut (CLT) (11°11‧N, 75°30‧E-11°14‧N,74°54‧E), about 230 nmi to the north. Meteorological, hydrological, and nutrient profiles confirmed upwelling off TVM. Bacteria, phytoplankton and zooplankton significantly responded. Primary and bacterial productivity enhanced together with increase in the percentage of viable bacteria (TVC). Pearson's correlation analysis pointed out the differences in bacterial interactions with other trophic levels at both transects. TVC played a prominent role in trophic interactions off TVM by depending on phytoplankton for substrate (r = 0.754). This contrasted with CLT where total counts (TC) played an important role. However, most interrelationships were less pronounced. Principal component analysis (PCA) confirmed the correlation analysis and further showed that the factor loadings of the biotic and abiotic parameters differed in strength and direction in the two regions. More importantly, the processes of mineralization by bacteria and uptake by phytoplankton are obviously more coupled off TVM as evidenced by the clustering of the related parameters in the PCA biplot. Canonical correspondence analysis also complements these findings and demonstrated that the abiotic factors influenced phytoplankton and bacteria similarly at TVM but differently at CLT. The impact on the trophic interrelationships is evident by the close association between all the variables in upwelling waters. Besides, bacteria may represent a more stable element in the food web, TVC for upwelling region and TC for non-upwelling region.

Summertime sea surface temperature fronts associated with upwelling around the Taiwan Bank

NASA Astrophysics Data System (ADS)

Lan, Kuo-Wei; Kawamura, Hiroshi; Lee, Ming-An; Chang, Yi; Chan, Jui-Wen; Liao, Cheng-Hsin

2009-04-01

It is well known that upwelling of subsurface water is dominant around the Taiwan Bank (TB) and the Penghu (PH) Islands in the southern Taiwan Strait in summertime. Sea surface temperature (SST) frontal features and related phenomena around the TB upwelling and the PH upwelling were investigated using long-term AVHRR (1996-2005) and SeaWiFS (1998-2005) data received at the station of National Taiwan Ocean University. SST and chlorophyll-a (Chl-a) images with a spatial resolution of 0.01° were generated and used for the monthly SST and Chl-a maps. SST fronts were extracted from each SST images and gradient magnitudes (GMs); the orientations were derived for the SST fronts. Monthly maps of cold fronts where the cooler SSTs were over a shallower bottom were produced from the orientation. Areas with high GMs (0.1-0.2 °C/km) with characteristic shapes appeared at geographically fixed positions around the TB/PH upwelling region where SSTs were lower than the surrounding waters. The well-shaped high GMs corresponded to cold fronts. Two areas with high Chl-a were found around the TB and PH Islands. The southern border of the high-Chl-a area in the TB upwelling area was outlined by the high-GM area. Shipboard measurements of snapshot vertical sections of temperature (T) and salinity (S) along the PH Channel showed a dome structure east of PH Islands, over which low SST and high GM in the maps of the corresponding month were present. Clear evidence of upwelling (vertically uniform distributions of T and S) was indicated at the TB edge in the T and S sections close to TB upwelling. This case of upwelling may be caused by bottom currents ascending the TB slope as pointed out by previous studies. The position of low SSTs in the monthly maps matched the upwelling area, and the high GMs corresponded to the area of eastern surface fronts in the T/S sections.

Evaluation of the saturation state of Aragonite, at Baja California Coast, Mexico

NASA Astrophysics Data System (ADS)

Oliva, N. L.; Hernandez, J. M.; Camacho, V.; Deldagillo, F.; Torres, V.; Siqueiros-Valencia, A.; Castro, R.

2012-12-01

The carbonate ion is in excess in the surface waters of the world's ocean, and is necessary for the formation of carbonate structures such as oyster shells and echinoderm skeletons. Seasonal upwelling in the California Current system brings dense water with high partial pressure of carbon dioxide to the sea surface and into contact with the atmosphere in the near shore. In order to evaluate the saturation state of Aragonite (ΩA), from November 2009 to November 2011, biweekly monitoring of dissolved inorganic carbon (CID), total alkalinity (TA), temperature (T) and salinity (S), in the intertidal zone at "Arbolitos" was conducted. During the same period, a mooring buoy located 3 km from Arbolitos recorded data every 3 hours for T and carbon dioxide partial pressure (pCO2), at the sea and in the air 1 meter above the sea surface.The ΩA was calculated for both study sites where upwelling events occurred during the spring-summer months. The data at both Arbolitos and mooring buoy shows that during the upwelling season maximum DIC concentration (2150μmol kg -1) and maximum pCO2 (863 μatm) correspond to the lowest temperature (11°C) and ΩA values (1; equilibrium). During the ten upwelling events identified (T < 15 °C, pCO2 > 387 μatm), the ΩA values (3 to 1) were not lower than the saturation limit (value of 1).The results show that the calcifying organisms in this region are persisting in an environment with variable ΩA conditions. It was determined that the longer the duration of the upwelling event, the lower the ΩA value, and the higher the change in pCO2. The ΩA interval (approximately 3 to 1) is not the same from year to year. This suggests interannual variations in upwelling, possibly due to El Niño (present during the first six months of 2010), and La Niña conditions (from July 2010 to November 2011).; t; Characteristics of the ten events of upwelling, at arbolitos and at the moorign buoy. For both study sites it shows the duration, pCO2, ΩA y pH values.

Potential new production in two upwelling regions of the western Arabian Sea: Estimation and comparison

NASA Astrophysics Data System (ADS)

Liao, Xiaomei; Zhan, Haigang; Du, Yan

2016-07-01

Using satellite-derived and in situ data, the wind-driven potential new production (nitrate supply) for the 300 km wide coastal band in two upwelling regions of the western Arabian Sea (AS) during the southwest monsoon is estimated. The upward nitrate flux to the euphotic zone is generally based on the physical processes of coastal transport (Ekman transport and geostrophic transport) and offshore Ekman pumping. The coastal geostrophic current in the western AS influences the upwelling intensity and latitudinal distributions of nitrate supply. The Oman and Somalia upwelling regions have similar level of potential new production (nitrate supply) during the summer monsoon, while the satellite estimates of primary production off Oman are 2 times greater than those off Somalia. The much higher potential f-ratio in the Somalia upwelling region indicates that the primary production could be limited by availability of other macronutrients (e.g., silicate). The correlation analysis of the primary production and the aerosol optical thickness shows that the Oman upwelling region displays a stronger coupling between the atmospheric deposition and the phytoplankton abundance. The high summertime dust levels in the atmosphere are suggested to contribute to the high primary production in the Oman upwelling region.

Intensification of Chile-Peru upwelling under climate change: diagnosing the impact of natural and anthropogenic forcing from the IPSL-CM5 model.

NASA Astrophysics Data System (ADS)

Jebri, B.; Khodri, M.; Gastineau, G.; Echevin, V.; Thiria, S.

2017-12-01

Upwelling is critical to the biological production, acidification, and deoxygenation of the ocean's major eastern boundary current ecosystems. A conceptual hypothesis suggests that the winds that favour coastal upwelling intensify with anthropogenic global warming due to increased land-sea temperature contrast. We examine this hypothesis for the dynamics of the Peru-Chile upwelling using a set of four large ensembles of coupled, ocean-atmosphere model simulations with the IPSL model covering the 1940-2014 period. In one large ensemble we prescribe the standard CMIP5 greenhouse gas (GHG) concentrations, anthropogenic aerosol, ozone and volcanic forcings, following the historical experiments through 2005 and RCP8.5 from 2006-2014, while the other ensembles consider separately the GHG, ozone and volcanic forcings. We find evidence for intensification of upwelling-favourable winds with however little evidence of atmospheric pressure gradients in response to increasing land-sea temperature differences. Our analyses reveal poleward migration and intensification of the South Pacific Anticyclone near poleward boundaries of climatological Peruvian and Chilean upwelling zones. This contribution further investigates the physical mechanisms for the Peru-Chile upwelling intensification and the relative role of natural and anthropogenic forcings.

Upwelling Dynamic Based on Satellite and INDESO Data in the Flores Sea

NASA Astrophysics Data System (ADS)

Kurniawan, Reski; Suriamihardja, D. A.; Hamzah Assegaf, Alimuddin

2018-03-01

Upwelling phenomenon is crucial to be forecasted, mainly concerning the information of potential fishery areas. Utilization of calibrated model for recorded upwelling such as INDESO gives benefit for historical result up to the present time. The aim of this study is to estimate areas and seasons of upwelling occurrences in the Flores Sea using data assimilation of satellite and modeling result. This study uses sea surface temperature, chlorophyll-a data from level 3 of MODIS image and sea surface height from satellite Jason-2 monthly for three years (2014-2016) and INDESO model data for sea surface temperature, sea surface height, and chlorophyll-a daily for three years (2014-2016). The upwelling is indicated by declining of sea surface temperature, sea surface height and increasing of chlorophyll-a. Verification is conducted by comparing the model result with recorded MODIS satellite image. The result shows that the area of southern Makassar Strait having occurrences of upwelling phenomenon every year starting in June, extended to July and August. The strongest upwelling occurred in 2015 covering more or less the area of 23,000 km2. The relation of monthly data of satellite has significantly correlated with daily data of INDESO model

Analysis of coastal upwelling and the production of a biomass

NASA Technical Reports Server (NTRS)

Howe, J. T.

1979-01-01

The coastal upwelling index derived from weather data is input to a set of coupled differential equations that describe the production of a biomass. The curl of the wind stress vector is discussed in the context of the physical extent of the upwelling structure. An analogy between temperature and biomass concentration in the upwelled coastal water is derived and the relationship is quantified. The use of remote satellite or airborne sensing to obtain biomass rate production coefficients is considered.

Contradictory Evidence on Wave Forcing of Tropical Upwelling in the Brewer-Dobson Circulation - A Suggested Resolution

NASA Technical Reports Server (NTRS)

Zhou, Tiehan; Geller, Marvin A.; Lin, Wuyin

2011-01-01

ERA-40 data are analyzed to demonstrate that wave forcing at lower latitudes plays a crucial role in driving the tropical upwelling portion of the Brewer-Dobson circulation. It is shown that subtropical wave forcing is correlated with tropical upwelling on both intraseasonal and interannual time scales when transient waves are taken into account, and that tropical wave forcing exerts its influence on tropical upwelling via its body force on the zonal mean flow.

Modeling of the mesoscale structure of coupled upwelling/downwelling events and the related input of nutrients to the upper mixed layer in the Gulf of Finland, Baltic Sea

NASA Astrophysics Data System (ADS)

Zhurbas, Victor; Laanemets, Jaan; Vahtera, Emil

2008-05-01

A high resolution numerical study is undertaken to simulate an upwelling event along the northern coast of the Gulf of Finland, 21-29 July 1999, which was documented well by in situ and remote measurements. The simulated sequence of SST maps shows a reasonably good resemblance to that of satellite infrared imagery, including both mesoscale coherent structures (filaments or squirts) and the whole process of post-upwelling relaxation of the temperature field. Upwelling along the northern coast of the Gulf is accompanied by downwelling along the southern coast so that two longshore baroclinic jets and related fronts are developed simultaneously. When the strong westerly winds producing the upwelling/downwelling weaken, the longshore jets become unstable and produce transverse jets, cold/warm water squirts. Using pseudo-random simulated fields of temperature and velocity of currents, the apparent lateral diffusivity due to squirts is directly estimated at 500 m2 s-1. The model is also applied to estimate nutrient transport. Simulated phosphate concentration in the surface layer at the cold side of upwelling front is found to be about 0.3 mmol m-3 which is consistent with observations. The total content of phosphorus and nitrogen in the upper 10 m layer of the Gulf introduced by the upwelling event is estimated to be 387 and 36 tons, respectively. It follows, that the upwelling event transports nutrients into the upper layer with clear excess of phosphorus (N:P = 36:387 = 0.093) compared to the Redfield ratio of 7.2. Therefore phosphorus input caused by upwelling during summer most likely promotes nitrogen-fixing cyanobacteria blooms.

Electrical image of passive mantle upwelling beneath the northern East Pacific Rise.

PubMed

Key, Kerry; Constable, Steven; Liu, Lijun; Pommier, Anne

2013-03-28

Melt generated by mantle upwelling is fundamental to the production of new oceanic crust at mid-ocean ridges, yet the forces controlling this process are debated. Passive-flow models predict symmetric upwelling due to viscous drag from the diverging tectonic plates, but have been challenged by geophysical observations of asymmetric upwelling that suggest anomalous mantle pressure and temperature gradients, and by observations of concentrated upwelling centres consistent with active models where buoyancy forces give rise to focused convective flow. Here we use sea-floor magnetotelluric soundings at the fast-spreading northern East Pacific Rise to image mantle electrical structure to a depth of about 160 kilometres. Our data reveal a symmetric, high-conductivity region at depths of 20-90 kilometres that is consistent with partial melting of passively upwelling mantle. The triangular region of conductive partial melt matches passive-flow predictions, suggesting that melt focusing to the ridge occurs in the porous melting region rather than along the shallower base of the thermal lithosphere. A deeper conductor observed east of the ridge at a depth of more than 100 kilometres is explained by asymmetric upwelling due to viscous coupling across two nearby transform faults. Significant electrical anisotropy occurs only in the shallowest mantle east of the ridge axis, where high vertical conductivity at depths of 10-20 kilometres indicates localized porous conduits. This suggests that a coincident seismic-velocity anomaly is evidence of shallow magma transport channels rather than deeper off-axis upwelling. We interpret the mantle electrical structure as evidence that plate-driven passive upwelling dominates this ridge segment, with dynamic forces being negligible.

Microplastic abundance, distribution and composition along a latitudinal gradient in the Atlantic Ocean.

PubMed

Kanhai, La Daana K; Officer, Rick; Lyashevska, Olga; Thompson, Richard C; O'Connor, Ian

2017-02-15

Microplastics in the world's oceans are a global concern due to the potential threat they pose to marine organisms. This study investigated microplastic abundance, distribution and composition in the Atlantic Ocean on a transect from the Bay of Biscay to Cape Town, South Africa. Microplastics were sampled from sub-surface waters using the underway system of the RV Polarstern. Potential microplastics were isolated from samples and FT-IR spectroscopy was used to identify polymer types. Of the particles analysed, 63% were rayon and 37% were synthetic polymers. The majority of microplastics were identified as polyesters (49%) and blends of polyamide or acrylic/polyester (43%). Overall, fibres (94%) were predominant. Average microplastic abundance in the Atlantic Ocean was 1.15±1.45particlesm -3 . Of the 76 samples, 14 were from the Benguela upwelling and there was no statistically significant difference in microplastic abundance between upwelled and non-upwelled sites. Copyright © 2016 Elsevier Ltd. All rights reserved.

Dynamics of upwelling annual cycle in the equatorial Atlantic Ocean

NASA Astrophysics Data System (ADS)

Wang, Li-Chiao; Jin, Fei-Fei; Wu, Chau-Ron; Hsu, Huang-Hsiung

2017-04-01

The annual upwelling is an important component of the equatorial Atlantic annual cycle. A simple theory is proposed using the framework of Zebiak-Cane (ZC) ocean model for insights into the dynamics of the upwelling annual cycle. It is demonstrated that in the Atlantic equatorial region this upwelling is dominated by Ekman processing in the west, whereas in the east it is primarily owing to shoaling and deepening of the thermocline resulting from equatorial mass meridional recharge/discharge and zonal redistribution processes associated with wind-driven equatorial ocean waves. This wind-driven wave upwelling plays an important role in the development of the annual cycle in the sea surface temperature of the cold tongue in the eastern equatorial Atlantic.

Record of the Pacific Large Low Shear Velocity Province Upwellings Preserved in the Cretaceous Large Igneous Provinces

NASA Astrophysics Data System (ADS)

Madrigal, P.; Gazel, E.; Flores, K. E.; Bizimis, M.; Jicha, B. R.

2015-12-01

As the surface expression of deep mantle dynamics, Large Igneous Provinces (LIPs) are associated with the edges of large low shear velocity provinces (LLSVP) rooted at the core-mantle boundary. Instabilities in the LLSVP can cause periodic upwellings of material in the form of mantle plumes, which impact the lithosphere forming LIPs. However, the time frames of these massive lava outpourings are still uncertain. While continental LIPs are more readily accessible, oceanic LIPs have only been studied through drilling and sampling of fragments accreted to continental margins or island arcs, hence, they are relatively less understood. The impact of oceanic LIPs on oceanic biota is conspicuously recorded in global occurrences of black shale deposits that evidence episodes of anoxia and mass extinctions shortly after the formation of LIPs that ultimately can affect life on the entire planet. Our new geochemical and geochronological data of accreted Pacific LIPs found in the coasts of Nicoya Peninsula in Costa Rica record three LIP pulses possibly reflecting upwelling periods of the LLSVP at 140, 120 and 90 Ma. In order to test different models of origin of these LIPS, we created a complete reconstruction of the Pacific Plate configuration from the Mid-Jurassic to Upper-Cretaceous to show the existing correlation between upwelling pulses at edges of the Pacific LLSVP, oceanic anoxic events and the age from Pacific LIPs. We propose that since the formation of the Pacific plate at circa 175-180 Ma, a series of upwellings that interacted with mid-ocean ridge systems separated by 10-20 Ma have affected the planet periodically forming oceanic LIPs that still can be found today on the Pacific seafloor and accreted along the plate margins.

Alkaline phosphatase activity at the southwest coast of India: A comparison of locations differently affected by upwelling

NASA Astrophysics Data System (ADS)

Mamatha, S. S.; Malik, Ashish; Varik, Sandesh; Parvathi, V.; Jineesh, V. K.; Gauns, Mangesh U.; LokaBharathi, P. A.

2015-01-01

The realization of the potential importance of phosphorus (P) as a limiting nutrient in marine ecosystem is increasing globally. Hence, the contribution of biotic variables in mobilizing this nutrient would be relevant especially in productive coastal waters. As alkaline phosphatase activity (APA) indicates the status of P for primary production in aquatic environments, we asked the following question: is the level of APA indicative of P sufficiency or deficiency in coastal waters, especially, where upwelling is a regular phenomenon? Therefore, we have examined the total APA, chlorophyll a along with phosphatase producing bacteria (PPB) and related environmental parameters from nearshore to offshore in coastal waters off Trivandrum and Kochi regions differently affected by upwelling during the onset of monsoon. Off Trivandrum, APA in the offshore waters of 5-m layer at 2.23 μM P h- 1 was > 4 times higher than nearshore. Thus, low APA could be indicative of P sufficiency in coastal waters and higher activity suggestive of deficiency in offshore waters off Trivandrum. In contrast, there was less difference in APA between near and offshore surface waters off Kochi. Our results show that the regions differently affected by upwelling respond differently according to ambient P concentration, distance from shore or depth of water. These observations could apparently be applicable to other coastal systems as well, where gradients in upwelling and phosphate runoff have been noticed. Further studies on other transects would throw more light on the extent and direction of the relationship between APA and ambient P concentration. Such studies would help in understanding the level of control of this nutrient on the productivity of coastal waters.

Multiple mantle upwellings in the transition zone beneath the northern East-African Rift system from relative P-wave travel-time tomography

NASA Astrophysics Data System (ADS)

Civiero, Chiara; Hammond, James O. S.; Goes, Saskia; Fishwick, Stewart; Ahmed, Abdulhakim; Ayele, Atalay; Doubre, Cecile; Goitom, Berhe; Keir, Derek; Kendall, J.-Michael; Leroy, Sylvie; Ogubazghi, Ghebrebrhan; Rümpker, Georg; Stuart, Graham W.

2015-09-01

Mantle plumes and consequent plate extension have been invoked as the likely cause of East African Rift volcanism. However, the nature of mantle upwelling is debated, with proposed configurations ranging from a single broad plume connected to the large low-shear-velocity province beneath Southern Africa, the so-called African Superplume, to multiple lower-mantle sources along the rift. We present a new P-wave travel-time tomography model below the northern East-African, Red Sea, and Gulf of Aden rifts and surrounding areas. Data are from stations that span an area from Madagascar to Saudi Arabia. The aperture of the integrated data set allows us to image structures of ˜100 km length-scale down to depths of 700-800 km beneath the study region. Our images provide evidence of two clusters of low-velocity structures consisting of features with diameter of 100-200 km that extend through the transition zone, the first beneath Afar and a second just west of the Main Ethiopian Rift, a region with off-rift volcanism. Considering seismic sensitivity to temperature, we interpret these features as upwellings with excess temperatures of 100 ± 50 K. The scale of the upwellings is smaller than expected for lower mantle plume sources. This, together with the change in pattern of the low-velocity anomalies across the base of the transition zone, suggests that ponding or flow of deep-plume material below the transition zone may be spawning these upper mantle upwellings. This article was corrected on 28 SEP 2015. See the end of the full text for details.

Initial observation of upwelling along east coast of Peninsular Malaysia musica gratis

NASA Astrophysics Data System (ADS)

Akhir, M.; Tanggang, F.

2013-12-01

There is no published evidence of upwelling in coastal area along the east coast of Peninsular Malaysia. However numbers of recent cruise data collected during the southwest monsoon found features of thermocline lifting and isolated cooler temperature water along the coast, These sign was observed along the 104°E from numbers of parallel transects. To confirm the presence of upwelling, satellite remote sensing data was used, and numerical model experiments were conducted. Cooler sea-surface temperature along the coast was observed from both in-situ and satellite data, while upward movement in the vertical profiles agreed with the location of upwelling from both in-situ and satellite data. Moreover, these data also show that the upwelled water band along the 104°E longitude stretch approximately 650 km long. Initially, southwesterly wind during this season is believed to be the important mechanism that contributed to this wind-induced Ekman upwelling. musica gratis

Poleward displacement of coastal upwelling-favorable winds through the 21st century

NASA Astrophysics Data System (ADS)

Rykaczewski, R. R.; Dunne, J. P.; Sydeman, W. J.; Garcia-Reyes, M.; Black, B.; Bograd, S. J.

2016-02-01

Coastal upwelling is a critical factor influencing the biological production, acidification, and deoxygenation of the ocean's major eastern boundary current ecosystems. A leading conceptual hypothesis projects that the winds that induce coastal upwelling will intensify in response to increased land-sea temperature differences associated with anthropogenic global warming. We examine this hypothesis using an ensemble of coupled, ocean-atmosphere models and find limited evidence for intensification of upwelling-favorable winds or atmospheric pressure gradients in response to increasing land-sea temperature differences. However, our analyses reveal consistent latitudinal and seasonal dependencies of projected changes in wind intensity associated with poleward migration of major atmospheric high-pressure cells. Summertime winds near poleward boundaries of climatological upwelling zones are projected to intensify, while winds near equatorward boundaries are projected to weaken. Developing a better understanding of future changes in upwelling winds is essential to identifying portions of the oceans susceptible to increased hypoxia, ocean acidification, and eutrophication under climate change.

Sedimentary silicon isotope indicates the Kuroshio subsurface upwelling in the East China Sea

NASA Astrophysics Data System (ADS)

Zhao, Y.; Yang, S.; Su, N.

2017-12-01

The Kuroshio as the western boundary current of the North Pacific subtropical circulation, originates from east of the Philippine Islands, and flows northeastward along the eastern coast of Taiwan. It's subsurface water intrudes the East China Sea (ECS) and forms a typical upwelling on the inner shelf, which may play an important role in the material and heat transport, biogeochemical process and marine ecosystem of the ECS.To date, most previous studies on the Kuroshio subsurface upwelling focuse on the seasonal and interannual variations, and few researches touch on the upwelling evolution in the geologic past. In this study, eight short sediment cores were taken along the ECS inner shelf (upwelling area), which allow us to reconstruct the upwelling history over the last several hundred years. Although conventional indexes of oceanographic changes, such as salinity, temperature and hydrogen and oxygen isotope, provide valuable constraints on the modern oceanic circulation and water mass movements, how to reconstruct them from geologic records is always a challenging work. In this contribution, we present the data of stable silicon isotope, biogenic opal, diatom assemblages, element geochemistry and stable carbon and nitrogen isotopes of these core sediments, and aim to decipher the Kuroshio subsurface upwelling history on the ECS shelf. We will also illustrate the difference in δ30Si signals between small (<30 um) and large (>150 um) diatom fractions, and test whether it is an effective indicator for paleo-upwelling intensity.

A model study of the response of hypoxia to upwelling-favorable wind on the northern Gulf of Mexico shelf

NASA Astrophysics Data System (ADS)

Feng, Yang; Fennel, Katja; Jackson, George A.; DiMarco, Steven F.; Hetland, Robert D.

2014-03-01

The hypoxic region in the northern Gulf of Mexico, one of the largest man-made hypoxic zones in the world, has received extensive scientific study and management interest. A previous statistical study has concluded that in addition to anthropogenic nitrogen loading, the observed hypoxic extent is correlated to the duration of upwelling favorable (westerly) wind without elucidating the underlying mechanism. In this study, we use a three-dimensional, coupled hydrological-biogeochemical model to mechanistically examine how variations of the hypoxic area are related to the duration of upwelling-favorable wind. We performed scenario experiments with different durations of upwelling-favorable wind using realistic winds from summer 2002 (when upwelling-favorable winds were present only for about 1 month) and summer 2009 (when upwelling-favorable conditions started early and persisted for about 2 months). While the maximum simulated hypoxic area is approximately 15,000 km2 in both cases, the evolutions of the hypoxic area and the dates when its maximum extent are reached are different. With an early start of persistently upwelling-favorable wind in 2009, the hypoxic area reached its maximum in early summer and decreased afterwards. By contrast, the hypoxic area was small in early summer of 2002 and peaked during the short period of upwelling-favorable wind in late summer. The model revealed that the wind influences the evolution of the hypoxic area by changing the vertical and horizontal distributions of the low salinity, high chlorophyll water on the shelf.

Surface circulation and upwelling patterns around Sri Lanka

NASA Astrophysics Data System (ADS)

de Vos, A.; Pattiaratchi, C. B.; Wijeratne, E. M. S.

2014-10-01

Sri Lanka occupies a unique location within the equatorial belt in the northern Indian Ocean, with the Arabian Sea on its western side and the Bay of Bengal on its eastern side, and experiences bi-annually reversing monsoon winds. Aggregations of blue whale (Balaenoptera musculus) have been observed along the southern coast of Sri Lanka during the northeast (NE) monsoon, when satellite imagery indicates lower productivity in the surface waters. This study explored elements of the dynamics of the surface circulation and coastal upwelling in the waters around Sri Lanka using satellite imagery and numerical simulations using the Regional Ocean Modelling System (ROMS). The model was run for 3 years to examine the seasonal and shorter-term (~10 days) variability. The results reproduced correctly the reversing current system, between the Equator and Sri Lanka, in response to the changing wind field: the eastward flowing Southwest Monsoon Current (SMC) during the southwest (SW) monsoon transporting 11.5 Sv (mean over 2010-2012) and the westward flowing Northeast Monsoon Current (NMC) transporting 9.6 Sv during the NE monsoon, respectively. A recirculation feature located to the east of Sri Lanka during the SW monsoon, the Sri Lanka Dome, is shown to result from the interaction between the SMC and the island of Sri Lanka. Along the eastern and western coasts, during both monsoon periods, flow is southward converging along the southern coast. During the SW monsoon, the island deflects the eastward flowing SMC southward, whilst along the eastern coast, the southward flow results from the Sri Lanka Dome recirculation. The major upwelling region, during both monsoon periods, is located along the southern coast, resulting from southward flow converging along the southern coast and subsequent divergence associated with the offshore transport of water. Higher surface chlorophyll concentrations were observed during the SW monsoon. The location of the flow convergence and hence the upwelling centre was dependent on the relative strengths of wind-driven flow along the eastern and western coasts: during the SW (NE) monsoon, the flow along the western (eastern) coast was stronger, migrating the upwelling centre to the east (west).

Influences of riverine and upwelling waters on the coastal carbonate system off Central Chile and their ocean acidification implications

NASA Astrophysics Data System (ADS)

Vargas, Cristian A.; Contreras, Paulina Y.; Pérez, Claudia A.; Sobarzo, Marcus; Saldías, Gonzalo S.; Salisbury, Joe

2016-06-01

A combined data set, combining data from field campaigns and oceanographic cruises, was used to ascertain the influence of both river discharges and upwelling processes, covering spatial and temporal variation in dissolved inorganic carbon (DIC) and aragonite saturation state. This work was conducted in one of the most productive river-influenced upwelling areas in the South Pacific coasts (36°S). Additionally, further work was also conducted to ascertain the contribution of different DIC sources, influencing the dynamics of DIC along the land-ocean range. Six sampling campaigns were conducted across seven stations at the Biobío River basin, covering approximately 200 km. Three research cruises were undertaken simultaneously, covering the adjacent continental shelf, including 12 sampling stations for hydrographic measurements. Additionally, six stations were also sampled for chemical analyses, covering summer, winter, and spring conditions over 2010 and 2011. Our results evidenced that seaward extent of the river plume was more evident during the winter field campaign, when highest riverine DIC fluxes were observed. The carbonate system along the river-ocean continuum was very heterogeneous varying over spatial and temporal scales. High DIC and pCO2 were observed in river areas with larger anthropogenic effects. CO2 supersaturation at the river plume was observed during all campaigns due to the influence of low pH river waters in winter/spring and high-pCO2 upwelling waters in summer. δ13CDIC evidenced that main DIC sources along the river and river plume corresponded to the respiration of terrestrial organic matter. We have linked this natural process to the carbonate saturation on the adjacent river-influenced coastal area, suggesting that Ωaragonite undersaturation in surface/subsurface waters is largely modulated by the influence of both river discharge and coastal upwelling events in this productive coastal area. Conditions of low Ωaragonite might impact negatively physiological traits for marine organisms, such as bivalves, gastropods, and crustaceans. Therefore, local populations from river-influenced sites could be inherently more tolerant to ocean acidification than organisms living in regions with lower Ωaragonite variability.

The OMZ and nutrient features as a signature of interannual and low-frequency variability in the Peruvian upwelling system

NASA Astrophysics Data System (ADS)

Graco, Michelle I.; Purca, Sara; Dewitte, Boris; Castro, Carmen G.; Morón, Octavio; Ledesma, Jesús; Flores, Georgina; Gutiérrez, Dimitri

2017-10-01

Over the last decades, the Humboldt Current upwelling ecosystem, particularly the northern component off the coast of Peru, has drawn the interest of the scientific community because of its unique characteristics: it is the upwelling system with the biggest catch productivity despite the fact it is embedded in a shallow and intense oxygen minimum zone (OMZ). It is also an area of intense nitrogen loss and anammox activity and experiences large interannual variability associated with the equatorial remote forcing. In this context, we examined the oceanographic and biogeochemical variability associated with the OMZ off central Peru from a monthly time series (1996-2011) recorded off the coast of Callao (12° 02' S, 77° 29' W). The data reveal a rich spectrum of variability in the OMZ that includes frequencies ranging from seasonal to interannual scales. Due to the efficient oceanic teleconnection off Peru, the observed variability is interpreted in the light of an estimate of the equatorial Kelvin wave contribution to sea level anomalies considering the peculiarities of its vertical structure (i.e., the first two baroclinic modes). The span of the data set allows us to contrast two OMZ regimes. The strong regime is associated with the strong 1997-1998 equatorial Pacific El Niño, during which the OMZ adjusted to Kelvin-wave-induced downwelling conditions that switched off the upwelling and drastically reduced nutrient availability. The weak regime corresponds to the post-2000 period associated with the occurrence of moderate central Pacific El Niño events and enhanced equatorial Kelvin wave activity, in which mean upwelling conditions are maintained. It is shown that the characteristics of the coupling between physics and biogeochemistry is distinct between the two regimes with the weak regime being associated with a larger explained variance in biogeochemical properties not linearly related to the ENSO oceanic teleconnection. The data also reveal a long-term trend from 1999 corresponding to a deepening of the oxygen-deficient waters and warming. The implications of our results for understanding the OMZ dynamics off Peru are discussed.

Radiolarian Indices of Paleoproductivity Variation in the late Pleistocene Benguela Upwelling System, ODP Site 1084

NASA Astrophysics Data System (ADS)

Bittniok, B. B.; Lazarus, D. B.; Diester-Haass, L.; Billups, K.; Meyers, P.

2006-12-01

Changes in export productivity play a significant role in ocean carbon budgets and global climate change. Proxies for export productivity can be difficult to interpret: benthic foraminifera accumulation rates (BFAR) can be affected by carbonate dissolution in organic-carbon rich sediments; bulk opal can be affected by silica limitation of source waters. Recent work (Lazarus et al. 2006; Mar. Micropal.) has shown that a new index based on radiolarian faunal changes (WADE ratio) correlates well to total organic carbon (TOC) values from the same samples over the long term (latest Miocene-Recent) history of productivity in the Benguela Upwelling System (BUS). We present new data on variation in export productivity proxies (WADE, TOC, carbonate, radiolarian opal, BFAR) for the last glacial-interglacial cycle from ODP Site 1084, located just offshore from the main coastal upwelling cells of the BUS. Our age model, from mean Quaternary sedimentation rates (Leg 175 Scientific Results), is in accordance with cyclic variation in other climate sensitive parameters (carbonate and color reflectance). Although opal content and radiolarian preservation is only moderate in our samples, WADE values vary significantly and suggest higher productivity during the last glacial, in accordance with current interpretations of BUS history. Radiolarian opal accumulation is also higher during the last glacial, suggesting that silica limitation (opal paradox) conditions did not dominate over this time period. Similar results for bulk opal have been reported from late Quaternary piston cores from the more northerly Congo upwelling region (Schneider et al, 1997; Paleoc.). We conclude that WADE ratios are a useful proxy for late Pleistocene productivity in the BUS at glacial- interglacial time scales.

Geodynamics of the East African Rift System ∼30 Ma ago: A stress field model

NASA Astrophysics Data System (ADS)

Min, Ge; Hou, Guiting

2018-06-01

The East African Rift System (EARS) is thought to be an intra-continental ridge that meets the Red Sea and the Gulf of Aden at the Ethiopian Afar as the failed arm of the Afar triple junction. The geodynamics of EARS is still unclear even though several models have been proposed. One model proposes that the EARS developed in a local tensile stress field derived from far-field loads because of the pushing of oceanic ridges. Alternatively, some scientists suggest that the formation of the EARS can be explained by upwelling mantle plumes beneath the lithospheric weak zone (e.g., the Pan-African suture zone). In our study, a shell model is established to consider the Earth's spherical curvature, the lithospheric heterogeneity of the African continent, and the coupling between the mantle plumes and the mid-ocean ridge. The results are calculated via the finite element method using ANSYS software and fit the geological evidence well. To discuss the effects of the different rock mechanical parameters and the boundary conditions, four comparative models are established with different parameters or boundary conditions. Model I ignores the heterogeneity of the African continent, Model II ignores mid-ocean spreading, Model III ignores the upwelling mantle plumes, and Model IV ignores both the heterogeneity of the African continent and the upwelling mantle plumes. Compared to these models is the original model that shows the best-fit results; this model indicates that the coupling of the upwelling mantle plumes and the mid-ocean ridge spreading causes the initial lithospheric breakup in Afar and East Africa. The extension direction and the separation of the EARS around the Tanzanian craton are attributed to the heterogeneity of the East African basement.

Meeting reproductive demands in a dynamic upwelling system: Foraging strategies of a pursuit-diving seabird, the marbled murrelet

USGS Publications Warehouse

Peery, M.Z.; Newman, S.H.; Storlazzi, C.D.; Beissinger, S.R.

2009-01-01

Seabirds maintain plasticity in their foraging behavior to cope with energy demands and foraging constraints that vary over the reproductive cycle, but behavioral studies comparing breeding and nonbreeding individuals are rare. Here we characterize how Marbled Murrelets (Brachyramphus marmoratus) adjust their foraging effort in response to changes in reproductive demands in an upwelling system in central California. We radio-marked 32 murrelets of known reproductive status (9 breeders, 12 potential breeders, and 11 nonbreeders) and estimated both foraging ranges and diving rates during the breeding season. Murrelets spent more time diving during upwelling than oceanographic relaxation, increased their foraging ranges as the duration of relaxation grew longer, and reduced their foraging ranges after transitions to upwelling. When not incubating, murrelets moved in a circadian pattern, spending nighttime hours resting near flyways used to reach nesting habitat and foraging during the daytime an average of 5.7 km (SD 6.7 km) from nighttime locations. Breeders foraged close to nesting habitat once they initiated nesting and nest attendance was at a maximum, and then resumed traveling longer distances following the completion of nesting. Nonbreeders had similar nighttime and daytime distributions and tended to be located farther from inland flyways. Breeders increased the amount of time they spent diving by 71-73% when they had an active nest by increasing the number of dives rather than by increasing the frequency of anaerobiosis. Thus, to meet reproductive demands during nesting, murrelets adopted a combined strategy of reducing energy expended commuting to foraging sites and increasing aerobic dive rates. ?? 2009 by The Cooper Ornithological Society. All rights reserved.

Egg production and hatching success of Calanus chilensis and Acartia tonsa in the northern Chile upwelling zone (23°S), Humboldt Current System

NASA Astrophysics Data System (ADS)

Ruz, Paula M.; Hidalgo, Pamela; Yáñez, Sonia; Escribano, Rubén; Keister, Julie E.

2015-08-01

Oxygen Minimum Zones (OMZ's) are expanding and intensifying as result of climate change, affecting Eastern Boundary Upwelling Systems. Local effects of vertical movements of OMZ's that result from changes in upwelling intensity could reduce or expand the oxygenated surface layer that most zooplanktonic species inhabit in coastal areas. Using the copepods Calanus chilensis and Acartia tonsa as model organisms, an experimental test of the impact of different dissolved oxygen (DO) concentrations (between 0.5 and 5 ml L- 1) on egg production and hatching success was carried out and compared with field estimations of egg production, female and egg abundance in Mejillones Bay (23°S). Abundance of C. chilensis was highly variability and no consistent pattern in egg production and hatching success was found across DO levels, whereas A. tonsa egg production had maximum values between 2.6 and 4.7 ml O2 L- 1 and hatching success was positively correlated with DO (r = 0.75). In the field, temperature was the main factor controlling the dynamics of both species, while Chl-a and DO were also correlated with C. chilensis and A. tonsa, respectively. Principal Component Analysis showed that abundances of both copepods were controlled by temperature, stratification, OMZ depth, and Ekman transport, which together explained more than 70% of the total variance and were the main factors that modulated the populations of C. chilensis and A. tonsa in the upwelling zone of northern Chile (23°S). The differential responses of C. chilensis and A. tonsa to changes in DO concentrations associated with vertical movements of the OMZ suggest that C. chilensis may be better adapted to hypoxic conditions than A. tonsa, however both species are successful and persistent all year-round. We suggest that physiological responses of copepods could be used to evaluate population dynamics affected by the shoaling of OMZ's and the repercussions to trophic food webs of eastern boundary current systems.

Preparing to predict: The Second Autonomous Ocean Sampling Network (AOSN-II) experiment in the Monterey Bay

NASA Astrophysics Data System (ADS)

Ramp, S. R.; Davis, R. E.; Leonard, N. E.; Shulman, I.; Chao, Y.; Robinson, A. R.; Marsden, J.; Lermusiaux, P. F. J.; Fratantoni, D. M.; Paduan, J. D.; Chavez, F. P.; Bahr, F. L.; Liang, S.; Leslie, W.; Li, Z.

2009-02-01

The Autonomous Ocean Sampling Network Phase Two (AOSN-II) experiment was conducted in and offshore from the Monterey Bay on the central California coast during July 23-September 6, 2003. The objective of the experiment was to learn how to apply new tools, technologies, and analysis techniques to adaptively sample the coastal ocean in a manner demonstrably superior to traditional methodologies, and to use the information gathered to improve predictive skill for quantities of interest to end-users. The scientific goal was to study the upwelling/relaxation cycle near an open coastal bay in an eastern boundary current region, particularly as it developed and spread from a coastal headland. The suite of observational tools used included a low-flying aircraft, a fleet of underwater gliders, including several under adaptive autonomous control, and propeller-driven AUVs in addition to moorings, ships, and other more traditional hardware. The data were delivered in real time and assimilated into the Harvard Ocean Prediction System (HOPS), the Navy Coastal Ocean Model (NCOM), and the Jet Propulsion Laboratory implementation of the Regional Ocean Modeling System (JPL/ROMS). Two upwelling events and one relaxation event were sampled during the experiment. The upwelling in both cases began when a pool of cold water less than 13 °C appeared near Cape Año Nuevo and subsequently spread offshore and southward across the bay as the equatorward wind stress continued. The primary difference between the events was that the first event spread offshore and southward, while the second event spread only southward and not offshore. The difference is attributed to the position and strength of meanders and eddies of the California Current System offshore, which blocked or steered the cold upwelled water. The space and time scales of the mesoscale variability were much shorter than have been previously observed in deep-water eddies offshore. Additional process studies are needed to elucidate the dynamics of the flow.

Real-time prediction of mediastinal lymph node malignancy by endobronchial ultrasound.

PubMed

Shafiek, Hanaa; Fiorentino, Federico; Peralta, Alejandro David; Serra, Enrique; Esteban, Blanca; Martinez, Rocío; Noguera, Maria Angels; Moyano, Pere; Sala, Ernest; Sauleda, Jaume; Cosío, Borja G

2014-06-01

To evaluate the utility of different ultrasonographic (US) features in differentiating benign and malignant lymph node (LN) by endobronchial ultrasound (EBUS) and validate a score for real-time clinical application. 208 mediastinal LN acquired from 141 patients were analyzed. Six different US criteria were evaluated (short axis ≥10 mm, shape, margin, echogenicity, and central hilar structure [CHS], and presence of hyperechoic density) by two observers independently. A simplified score was generated where the presence of margin distinction, round shape and short axis ≥10 mm were scored as 1 and heterogeneous echogenicity and absence of CHS were scored as 1.5. The score was evaluated prospectively for real-time clinical application in 65 LN during EBUS procedure in 39 patients undertaken by two experienced operators. These criteria were correlated with the histopathological results and the sensitivity, specificity, positive and negative predictive values (PPV and NPV) were calculated. Both heterogenicity and absence of CHS had the highest sensitivity and NPV (≥90%) for predicting LN malignancy with acceptable inter-observer agreement (92% and 87% respectively). On real-time application, the sensitivity and specificity of the score >5 were 78% and 86% respectively; only the absence of CHS, round shape and size of LN were significantly associated with malignant LN. Combination of different US criteria can be useful for prediction of mediastinal LN malignancy and valid for real-time clinical application. Copyright © 2013 SEPAR. Published by Elsevier Espana. All rights reserved.

Cytological preparations for molecular analysis: A review of technical procedures, advantages and limitations for referring samples for testing.

PubMed

da Cunha Santos, G; Saieg, M A; Troncone, G; Zeppa, P

2018-04-01

Minimally invasive procedures such as endobronchial ultrasound-guided transbronchial needle aspiration (EBUS-TBNA) must yield not only good quality and quantity of material for morphological assessment, but also an adequate sample for analysis of molecular markers to guide patients to appropriate targeted therapies. In this context, cytopathologists worldwide should be familiar with minimum requirements for refereeing cytological samples for testing. The present manuscript is a review with comprehensive description of the content of the workshop entitled Cytological preparations for molecular analysis: pre-analytical issues for EBUS TBNA, presented at the 40th European Congress of Cytopathology in Liverpool, UK. The present review emphasises the advantages and limitations of different types of cytology substrates used for molecular analysis such as archival smears, liquid-based preparations, archival cytospin preparations and FTA (Flinders Technology Associates) cards, as well as their technical requirements/features. These various types of cytological specimens can be successfully used for an extensive array of molecular studies, but the quality and quantity of extracted nucleic acids rely directly on adequate pre-analytical assessment of those samples. In this setting, cytopathologists must not only be familiar with the different types of specimens and associated technical procedures, but also correctly handle the material provided by minimally invasive procedures, ensuring that there is sufficient amount of material for a precise diagnosis and correct management of the patient through personalised care. © 2018 John Wiley & Sons Ltd.

The additional role of Xpert MTB/RIF in the diagnosis of intrathoracic tuberculous lymphadenitis.

PubMed

Lee, Jinwoo; Choi, Sun Mi; Lee, Chang-Hoon; Lee, Sang-Min; Yim, Jae-Joon; Yoo, Chul-Gyu; Kim, Young Whan; Han, Sung Koo; Park, Young Sik

2017-06-01

Diagnosis of intrathoracic tuberculosis (TB) lymphadenitis remains a challenge because of difficulties in obtaining adequate tissue and the lack of a sensitive test. Recently, Xpert MTB/RIF assay is being used for rapid diagnosis of pulmonary TB, but it has not yet been widely validated in intrathoracic TB lymphadenitis. The aim of this study was to assess the additional role of Xpert MTB/RIF in diagnosing intrathoracic TB lymphadenitis using endobronchial ultrasound-guided transbronchial needle aspiration (EBUS-TBNA) specimen. Consecutive patients who underwent Xpert MTB/RIF assay using EBUS-TBNA specimen from January 2012 and November 2013 at a tertiary referral hospital were recruited. Among them, the cases with malignant lymph nodes were excluded. Among 73 patients, 13 (17.8%) cases were diagnosed with intrathoracic TB lymphadenitis. In detail, 10 patients were diagnosed using conventional methods only (histology or AFB culture) and 3 patients were additionally diagnosed when adding Xpert MTB/RIF assay. The median time to diagnosis using Xpert MTB/RIF (1 day) was shorter than conventional methods (3 days for histology, 14 days for AFB culture). Rifampin resistance was not detected in any patients. In patients with enlarged intrathoracic lymph nodes and low suspicion of malignancy, combination of conventional diagnostic methods with Xpert MTB/RIF could lead to additional and rapid diagnosis of intrathoracic TB lymphadenitis. Copyright © 2017 Japanese Society of Chemotherapy and The Japanese Association for Infectious Diseases. Published by Elsevier Ltd. All rights reserved.

FIRE_ACE_C130_RAMS

Atmospheric Science Data Center

2017-04-26

... NCAR C-130 Instrument:  Radiation Measurement System Spatial Coverage:  Fairbanks, Alaska and the ... Parameters:  Upwelling and Downwelling Total Solar Flux Infrared Flux and Narrowband Flux Order Data:  ...

The phenomenon of bloom development of the invasive potentially toxic dinoflagellate Gonyaulax polygramma in deep water areas of the Caspian Sea

NASA Astrophysics Data System (ADS)

Pautova, L. A.; Kravchishina, M. D.; Silkin, V. A.; Lisitzin, A. P.

2017-06-01

This work presents the first data on the occurrence of the invasive, potentially toxic dinoflagellate Gonyaulax polygramma in the composition of plankton phytocenoses in the Caspian Sea. It was revealed that G. polygramma plays the key role in the quantitative characteristics of summer plankton phytocenoses and its bloom during the summer seasons of 2010 and 2013 was comparable in biomass (15-16 g/m3) to a "red tide." In addition, the correlation between the G. polygramma bloom and the wind upwelling system in the eastern mid-Caspian region was established. For the first time, it is suggested that "bloom" of G. polygramma can also occur in deep-water halistatic areas (Derbent depression), remote from the upwelling system.

Spiraling pathways of global deep waters to the surface of the Southern Ocean.

PubMed

Tamsitt, Veronica; Drake, Henri F; Morrison, Adele K; Talley, Lynne D; Dufour, Carolina O; Gray, Alison R; Griffies, Stephen M; Mazloff, Matthew R; Sarmiento, Jorge L; Wang, Jinbo; Weijer, Wilbert

2017-08-02

Upwelling of global deep waters to the sea surface in the Southern Ocean closes the global overturning circulation and is fundamentally important for oceanic uptake of carbon and heat, nutrient resupply for sustaining oceanic biological production, and the melt rate of ice shelves. However, the exact pathways and role of topography in Southern Ocean upwelling remain largely unknown. Here we show detailed upwelling pathways in three dimensions, using hydrographic observations and particle tracking in high-resolution models. The analysis reveals that the northern-sourced deep waters enter the Antarctic Circumpolar Current via southward flow along the boundaries of the three ocean basins, before spiraling southeastward and upward through the Antarctic Circumpolar Current. Upwelling is greatly enhanced at five major topographic features, associated with vigorous mesoscale eddy activity. Deep water reaches the upper ocean predominantly south of the Antarctic Circumpolar Current, with a spatially nonuniform distribution. The timescale for half of the deep water to upwell from 30° S to the mixed layer is ~60-90 years.Deep waters of the Atlantic, Pacific and Indian Oceans upwell in the Southern Oceanbut the exact pathways are not fully characterized. Here the authors present a three dimensional view showing a spiralling southward path, with enhanced upwelling by eddy-transport at topographic hotspots.

Changes in the partial pressure of carbon dioxide in the Mauritanian-Cap Vert upwelling region between 2005 and 2012

NASA Astrophysics Data System (ADS)

González-Dávila, Melchor; Magdalena Santana Casiano, J.; Machín, Francisco

2017-08-01

Coastal upwellings along the eastern margins of major ocean basins represent regions of large ecological and economic importance due to the high biological productivity. The role of these regions for the global carbon cycle makes them essential in addressing climate change. The physical forcing of upwelling processes that favor production in these areas are already being affected by global warming, which will modify the intensity of upwelling and, consequently, the carbon dioxide cycle. Here, we present monthly high-resolution surface experimental data for temperature and partial pressure of carbon dioxide in one of the four most important upwelling regions of the planet, the Mauritanian-Cap Vert upwelling region, from 2005 to 2012. This data set provides direct evidence of seasonal and interannual changes in the physical and biochemical processes. Specifically, we show an upwelling intensification and an increase of 0.6 Tg yr-1 in CO2 outgassing due to increased wind speed, despite increased primary productivity. This increase in CO2 outgassing together with the observed decrease in sea surface temperature at the location of the Mauritanian Cap Blanc, 21° N, produced a pH rate decrease of -0.003 ± 0.001 yr-1.

Upwelling Scales off the Coast of Peru: Comparison of Observation and Model

NASA Astrophysics Data System (ADS)

Vazquez, J.; Chin, T. M.; Armstrong, E. M.

2014-12-01

Upwelling regions of the world's oceans are home to some of the most productive fisheries. Yet these coastal areas provide unique challenges for remote sensing from satellite platforms because of both their proximity to land (radar interference) and typically small horizontal scales (< 50km) of upwelling processes. Comparisons are performed on the gradient of sea surface temperature (SST) fields derived from multiple sources: 1) the 0.25 degree resolution National Climatic Data Center (NCDC) Optimally Interpolated AVHRR+in-situ or AVHRR_OI, data set. 2) the 1km resolution Multi-scale Ultra-high Resolution (MUR) gridded SST data set, 3) the 0.25 degree resolution SST derived from the WindSat microwave sensor, 4) a 2km version of the Estimating the Circulation and Climate of the Ocean Model (HECCO2). Temporal and spatial correlations between HECCO2 and MUR, as well as between HECCO2 and NCDC, are examined through the dominant singular vectors (eigenmodes) of the covariance matrix for each pair of data sets. In both cases the first mode of covariability accounts for over 90% of the total variance. A simple technique based on SST gradients is then applied to the first mode to determine the upwelling scales based on HECCO2, MUR, and NCDC. Longitudinal sections at 8S, 20S, and 30S indicate that the upwelling scale decreases between 8S and 20S. At 20S the first mode of covariability between MUR and HECCO2 indicate an upwelling scale between 25 and 50km. Results are consistent when compared with chlorophyll-a data from MODIS-Aqua. Such upwelling scales are not seen in the WindSat data and reduced in the NCDC data. A reduction of the upwelling scale by a factor 0.2 between 8S and 20S is consistent with a dependence on the Coriolis parameter. A major conclusion of the work is that magnitudes of SST gradient and upwelling scales derived from MUR are consistent with those of the HECCO2 for the test period of October-November 2011. Additionally, it is shown that to resolve upwelling scales near the coast high resolution infrared data must be used in the analysis. Microwave derived SSTs, such as those from WindSat are of limited value when upwelling scales are less then 50km.

Water masses in the Monterey Bay during the summer of 2000

NASA Astrophysics Data System (ADS)

Warn-Varnas, Alex; Gangopadhyay, Avijit; Hawkins, J. A.

2007-06-01

Water masses in Monterey Bay are determined from the CTD casts of the Monterey Ocean Observing System (MOOS) Upper-water-column Science Experiment (MUSE) August 2000 dataset. It is shown through cluster analysis that the MUSE 2000 CTD dataset contains 5 water masses. These five water masses are: bay surface water (BSW), bay warm water (BWW), bay intermediate water (BIW), sub arctic upper water (SUW) and North Pacific deep water (NPDW). The BWW is a new water mass that exists in one area and is attributed to the effects of solar heating. The volumes occupied by each of the water masses are obtained. The BIW water is the most dominant water mass and occupies 68.8% of the volume. The statistical means and standard deviations for each water parameter, including spiciness and oxygen concentration, are calculated during separate upwelling and relaxed periods. The water mass content and structure are analyzed and studied during upwelling and a relaxed period. During upwelling, along a CTD track off Pt. Ano Nuevo, the water mass T, S distribution tended to be organized along three branches. Off Pt. Ano Nuevo the innovative coastal observation network (ICON) model showed the formation of a cyclonic eddy during the analyzed upwelling period. In time the eddy moved southwest and became absorbed into the southerly flow during the initial phases of the following wind-relaxed period.

Mussel farming impact on pelagic production and respiration rates in a coastal upwelling embayment (Ría de Vigo, NW Spain)

NASA Astrophysics Data System (ADS)

Froján, María; Castro, Carmen G.; Zúñiga, Diana; Arbones, Belén; Alonso-Pérez, Fernando; Figueiras, Francisco G.

2018-05-01

This paper provides the first diagnosis of the impact of mussel farming on the primary production (PP) and the metabolic balance in a coastal upwelling region (Ría de Vigo). Measurements of size-fractionated PP and microbial plankton metabolism were performed outside (reference station; ReS) and inside the farming area (raft station; RaS). At ReS, integrated PP was higher during upwelling (1.05 ± 0.45 g C m-2 d-1) with microphytoplankton dominating carbon fixation (74 ± 14%). The significance of nanophytoplankton and picophytoplankton increased during winter linked to lower PP (0.24 ± 0.03 g C m-2 d-1). Water column at ReS was always autotrophic with net community production (NCP) ranging from 186 ± 67 mmol O2 m-2 d-1 during upwelling to 43 ± 22 mmol O2 m-2 d-1 in winter. At RaS, there was a decrease in PP attributable not only to mussel consumption but also to the lower irradiance under mussel rafts. Concomitant decrease in NCP was also observed (by 56%), yet remained autotrophic, supporting the view that under current conditions food does not limit mussel growth in the Ría, thus securing the carrying capacity of the system in terms of production.

Climate variability and Dinophysis acuta blooms in an upwelling system.

PubMed

Díaz, Patricio A; Ruiz-Villarreal, Manuel; Pazos, Yolanda; Moita, Teresa; Reguera, Beatriz

2016-03-01

Dinophysis acuta is a frequent seasonal lipophilic toxin producer in European Atlantic coastal waters associated with thermal stratification. In the Galician Rías, populations of D. acuta with their epicentre located off Aveiro (northern Portugal), typically co-occur with and follow those of Dinophysis acuminata during the upwelling transition (early autumn) as a result of longshore transport. During hotter than average summers, D. acuta blooms also occur in August in the Rías, when they replace D. acuminata. Here we examined a 30-year (1985-2014) time series of D. acuta from samples collected by the same method in the Galician Rías. Our main objective was to identify patterns of distribution and their relation with climate variability, and to explain the exceptional summer blooms of D. acuta in 1989-1990. A dome-shaped relationship was found between summer upwelling intensity and D. acuta blooms; cell maxima were associated with conditions where the balance between upwelling intensity and heating, leading to deepened thermoclines, combined with tidal phase (3 days after neap tides) created windows of opportunity for this species. The application of a generalized additive model based on biological (D. acuta inoculum) and environmental predictors (Cumulative June-August upwelling CUI JJA , average June-August SST JJA and tidal range) explained more than 70% of the deviance for the exceptional summer blooms of D. acuta, through a combination of moderate (35,000-50,000m 3 s -1 km -1 ) summer upwelling (CUI JJA ), thermal stratification (SST JJA >17°C) and moderate tidal range (∼2.5m), provided D. acuta cells (inoculum) were present in July. There was no evidence of increasing trends in D. acuta bloom frequency/intensity nor a clear relationship with NAO or other long-term climatic cycles. Instead, the exceptional summer blooms of 1989-1990 appeared linked to extreme hydroclimatic anomalies (high positive anomalies in SST and NAO index), which affected most of the European Atlantic coast. Copyright © 2015 The Authors. Published by Elsevier B.V. All rights reserved.

Transient response of the Northwestern Iberian upwelling regime.

PubMed

Ferreira Cordeiro, Nuno Gonçalo; Dubert, Jesus; Nolasco, Rita; Desmond Barton, Eric

2018-01-01

The hydrography and dynamics of NW Iberian margin were explored for July 2009, based on a set of in situ and remote sensing observations. Zonal sections of standard CTD casts, towed CTD (SeaSoar), Acoustic Doppler Current Profilers (ADCP) and Lagrangian surveys were made to characterize cycles of upwelling and relaxation in this region. Two periods of northerly winds, bounded by relaxation periods, were responsible for the formation of an upwelling front extending to the shelf edge. An equatorward flow was quickly set up on the shelf responding to the northerly wind pulses. South of Cape Silleiro, the development and subsequent relaxation of an upwelling event was intensively surveyed in the shelf, following a Lagrangian drifter transported by the upwelling jet. This region is part of an upwelling center extending from Cape Silleiro to Porto, where the surface temperature was colder than the neighboring regions, under upwelling favorable winds. As these winds relaxed, persistent poleward flow developed, originating south of the upwelling center and consisting in an inner-shelf tongue of warm waters. During an event of strong southerly wind, the poleward flow was observed to extend to the whole continental shelf. Although the cruise was executed during summertime, the presence of river-plumes was observed over the shelf. The interaction of the plumes with the circulation on the shelf was also described in terms of coastal convergence and offshore advection. The sampling of the offshore and slope regions showed the presence of the Iberian poleward current offshore and a persistent equatorward flow over the upper slope.

Does upwelling intensity influence feeding habits and trophic position of planktivorous fish?

NASA Astrophysics Data System (ADS)

Lopez-Lopez, Lucia; Preciado, Izaskun; Muñoz, Isabel; Decima, Moira; Molinero, Juan Carlos; Tel, Elena

2017-04-01

Food web configuration is shaped by many factors, including primary production patterns and oceanographic features, such as upwelling events. In this study, we investigate variability in the trophic position, food web interlinks and energy pathways of four planktivorous demersal fish in the Southern Bay of Biscay- NE Atlantic. The study area is exposed to upwelling events of varying intensity and shows a significant spatial gradient along the coast. The two sampling years were characterized by markedly different conditions, with weak summer upwelling in 2012 and an intense upwelling season in 2013. We used a complementary approach based on stomach content analysis (SCA) and stable isotope analysis (SIA) to test the effects of upwelling intensity and persistence on the food-web. In particular we investigated whether different intensities shift the main flow of energy between the pelagic and benthic energy pathways. We found conspicuous interannual changes in the isotopic POM, whose δ15N was 2.5‰ lower during the productive 2013 season. Interannual changes in the isotopic signature of the fish species were also detected, although their values did not mirror variability at the basal level. The SCA results did not match the isotopic changes, which likely reflected dietary adjustments of the species during summer. The upwelling intensity gradient along the coast did not affect the nitrogen isotopic ratio of any group, however there was a significant effect of such gradient on the carbon isotopic ratio of the fish and euphausiid species. This effect was likely related to the higher primary production associated with intense upwelling conditions.

Influence of Coastal Upwelling on SST Trends along the South Coast of Java

PubMed Central

Varela, R.; Santos, F.; Gómez-Gesteira, M.; Álvarez, I.; Costoya, X.; Días, J. M.

2016-01-01

The south coast of Java has warmed at a much lower rate than adjacent ocean locations over the last three decades (1982–2015). This behavior can be observed during the upwelling season (July-October) and it is especially patent in August and September when upwelling attains the highest values. Although different warming rates (ocean-coast) had been previously observed in other areas around the world, this behavior was always linked to situations where upwelling increased or remained unchanged. South Java warming is observed at ocean locations and cooling near shore but under a scenario of decreasing upwelling (~30% in some cases). The origin of coastal cooling is due to changes in the vertical structure of the water column. A vein of subsurface water, which has cooled at a rate higher than 0.3°C per decade, is observed to enter from the northwestern part of the study area following the South Java Current. This water only manifests at surface near coast, where it is pumped up by coastal upwelling. PMID:27606676

Practical limitations on the use of diurnal temperature signals to quantify groundwater upwelling

USGS Publications Warehouse

Briggs, Martin A.; Lautz, Laura K.; Buckley, Sean F.; Lane, John W.

2014-01-01

Groundwater upwelling to streams creates unique habitat by influencing stream water quality and temperature; upwelling zones also serve as vectors for contamination when groundwater is degraded. Temperature time series data acquired along vertical profiles in the streambed have been applied to simple analytical models to determine rates of vertical fluid flux. These models are based on the downward propagation characteristics (amplitude attenuation and phase-lag) of the surface diurnal signal. Despite the popularity of these models, there are few published characterizations of moderate-to-strong upwelling. We attribute this limitation to the thermodynamics of upwelling, under which the downward conductive signal transport from the streambed interface occurs opposite the upward advective fluid flux. Governing equations describing the advection–diffusion of heat within the streambed predict that under upwelling conditions, signal amplitude attenuation will increase, but, counterintuitively, phase-lag will decrease. Therefore the extinction (measurable) depth of the diurnal signal is very shallow, but phase lag is also short, yielding low signal to noise ratio and poor model sensitivity. Conversely, amplitude attenuation over similar sensor spacing is strong, yielding greater potential model sensitivity. Here we present streambed thermal time series over a range of moderate to strong upwelling sites in the Quashnet River, Cape Cod, Massachusetts. The predicted inverse relationship between phase-lag and rate of upwelling was observed in the field data over a range of conditions, but the observed phase-lags were consistently shorter than predicted. Analytical solutions for fluid flux based on signal amplitude attenuation return results consistent with numerical models and physical seepage meters, but the phase-lag analytical model results are generally unreasonable. Through numerical modeling we explore reasons why phase-lag may have been over-predicted by the analytical models, and develop guiding relations of diurnal temperature signal extinction depth based on stream diurnal signal amplitude, upwelling magnitude, and streambed thermal properties that will be useful in designing future experiments.

Evaluation of the sinks and sources of atmospheric CO2 by artificial upwelling.

PubMed

Pan, Yiwen; Fan, Wei; Huang, Ting-Hsuan; Wang, Shu-Lun; Chen, Chen-Tung Arthur

2015-04-01

Artificial upwelling is considered a promising way to reduce the accumulation of anthropogenic carbon dioxide in the atmosphere. This practice could transport nutrient-rich deep water to the euphotic zone, enhance phytoplankton growth and consequently increase organic carbon exportation to the deep ocean via the biological pump. However, only a few studies quantitatively assess changes in oceanic CO2 uptake resulting from artificial upwelling. This article uses a simulation to examine the effect of hypothetical artificial upwelling-induced variations of CO2 fugacity in seawater (fCO2) using observed carbon and nutrient data from 14 stations, ranging from 21 to 43°N, in the West Philippine Sea (WPS), the East China Sea (ECS) and the Sea of Japan. Calculations are based on two basic assumptions: First, a near-field mixing of a nutrient-rich deep-ocean water plume in a stratified ocean environment is assumed to form given the presence of an artificial upwelling devise with appropriate technical parameters. Second, it is assumed that photosynthesis of marine phytoplankton could deplete all available nutrients following the stoichiometry of the modified Redfield ratio C/H/O/N/S/P=103.1/181.7/93.4/11.7/2.1/1. Results suggest artificial upwelling has significant effects on regional changes in sea-air differences (ΔfCO2sea-air) and the carbon sequestration potential (ΔfCO2mixed-amb). Large variations of ΔfCO2sea-air and ΔfCO2mixed-amb are shown to be associated with different regions, seasons and technical parameters of the artificial upwelling device. With proper design, it is possible to reverse the contribution of artificial upwelling from a strong CO2 source to sink. Thus, artificial upwelling has the potential to succeed as a geoengineering technique to sequester anthropogenic CO2, with appropriate technical parameters in the right region and season. Copyright © 2014 Elsevier B.V. All rights reserved.

Upwelling Response to Hurricane Isaac in Geostrophic Oceanic Vortices

NASA Astrophysics Data System (ADS)

Jaimes, B.; Shay, L. K.; Brewster, J. K.; Schuster, R.

2013-05-01

As a tropical cyclone (TC) moves over the ocean, the cyclonic curl of the wind stress produces a region of upwelling waters under the TC center that is compensated by downwelling waters at regions outside the center. Direct measurements conducted during hurricane Rita and recent numerical studies indicate that this is not necessarily the case when TCs move over geostrophic oceanic features, where its background relative vorticity impacts wind-driven horizontal current divergence and the upwelling velocity. Modulation of the upwelling response in these energetic oceanic regimes impacts vertical mixing across the oceanic mixed layer base, air-sea fluxes into the atmosphere, and ultimately storm intensity. As part of NOAA Intensity Forecasting Experiment, an experiment was conducted during the passage of TC Isaac over the energetic geostrophic eddy field in the Gulf of Mexico in August 2012. Expendable bathythermographs, current profilers, and conductivity-temperature-depth probes were deployed in Isaac from NOAA WP-3D aircraft during four in-storm flights to measure oceanic variability and its impact on TC-driven upwelling and surface fluxes of heat and momentum. During intensification to hurricane, the cyclonic curl of the wind stress of Isaac extended over a region of more than 300 km in diameter (4 to 5 times the radius of maximum winds). Isaac's center moved over a cold cyclonic feature, while its right and left sides moved over warm anticyclones. Contrasting upwelling and downwelling regimes developed inside the region of cyclonic curl of the wind stress. Both positive (upwelling) and negative (downwelling) vertical displacements of 40 and 60 m, respectively, were measured inside the region of cyclonic curl of the wind stress, which are between 3 to 4 times larger than predicted vertical displacements for a quiescent ocean based on scaling arguments. Oceanic mixed layer (OML) currents of 0.2 to 0.7 m s-1 were measured, which are about 50% smaller than the expected velocity response under quiescent oceanic conditions. Although OML currents were measured inside the core of cyclonic curl of the wind stress, their orientation is not consistent with horizontally divergent flows typically found in upwelling regimes under TC centers. Theoretical predictions that consider background relative vorticity effects on the upwelling response mimic the contrasting upwelling/downwelling regimes inside the region of cyclonic curl of the wind stress. These results point to an important modulation of the OML current and upwelling response by background oceanic flows, where the upwelling velocity is a function of the curl of wind-intensified pre-storm geostrophic currents, rather than just a function of the curl of the wind stress. Thus, properly initializing temperature and salinity fields in numerical models is needed to accurately represent these oceanic processes in coupled forecast models.

Pathways of upwelling deep waters to the surface of the Southern Ocean

NASA Astrophysics Data System (ADS)

Tamsitt, Veronica; Drake, Henri; Morrison, Adele; Talley, Lynne; Dufour, Carolina; Gray, Alison; Griffies, Stephen; Mazloff, Matthew; Sarmiento, Jorge; Wang, Jinbo; Weijer, Wilbert

2017-04-01

Upwelling of Atlantic, Indian and Pacific deep waters to the sea surface in the Southern Ocean closes the global overturning circulation and is fundamentally important for oceanic uptake of anthropogenic carbon and heat, nutrient resupply for sustaining oceanic biological production, and the melt rate of ice shelves. Here we go beyond the two-dimensional view of Southern Ocean upwelling, to show detailed Southern Ocean upwelling pathways in three dimensions, using hydrographic observations and particle tracking in high-resolution ocean and climate models. The northern deep waters enter the Antarctic Circumpolar Current (ACC) via narrow southward currents along the boundaries of the three ocean basins, before spiraling southeastward and upward through the ACC. Upwelling is greatly enhanced at five major topographic features, associated with vigorous mesoscale eddy activity. Deep water reaches the upper ocean predominantly south of the southern ACC boundary, with a spatially nonuniform distribution, regionalizing warm water supply to Antarctic ice shelves and the delivery of nutrient and carbon-rich water to the sea surface. The timescale for half of the deep water to upwell from 30°S to the mixed layer is on the order of 60-90 years, which has important implications for the timescale for signals to propagate through the deep ocean. In addition, we quantify the diabatic transformation along particle trajectories, to identify where diabatic processes are important along the upwelling pathways.

Cetacean distributions relative to ocean processes in the northern California Current System

NASA Astrophysics Data System (ADS)

Tynan, Cynthia T.; Ainley, David G.; Barth, John A.; Cowles, Timothy J.; Pierce, Stephen D.; Spear, Larry B.

2005-01-01

Associations between cetacean distributions, oceanographic features, and bioacoustic backscatter were examined during two process cruises in the northern California Current System (CCS) during late spring and summer 2000. Line-transect surveys of cetaceans were conducted across the shelf and slope, out to 150 km offshore from Newport, Oregon (44.6°N) to Crescent City, California (41.9°N), in conjunction with multidisciplinary mesoscale and fine-scale surveys of ocean and ecosystem structure. Occurrence patterns (presence/absence) of cetaceans were compared with hydrographic and ecological variables (e.g., sea surface salinity, sea surface temperature, thermocline depth, halocline depth, chlorophyll maximum, distance to the center of the equatorward jet, distance to the shoreward edge of the upwelling front, and acoustic backscatter at 38, 120, 200 and 420 kHz) derived from a towed, undulating array and a bioacoustic system. Using a multiple logistic regression model, 60.2% and 94.4% of the variation in occurrence patterns of humpback whales Megaptera novaeangliae during late spring and summer, respectively, were explained. Sea surface temperature, depth, and distance to the alongshore upwelling front were the most important environmental variables during June, when humpbacks occurred over the slope (200-2000 m). During August, when humpbacks concentrated over a submarine bank (Heceta Bank) and off Cape Blanco, sea surface salinity was the most important variable, followed by latitude and depth. Humpbacks did not occur in the lowest salinity water of the Columbia River plume. For harbor porpoise Phocoena phocoena, the model explained 79.2% and 70.1% of the variation in their occurrence patterns during June and August, respectively. During spring, latitude, sea surface salinity, and thermocline gradient were the most important predictors. During summer, latitude and distance to the inshore edge of the upwelling front were the most important variables. Typically a coastal species, harbor porpoises extended their distribution farther offshore at Heceta Bank and at Cape Blanco, where they were associated with the higher chlorophyll concentrations in these regions. Pacific white-sided dolphin Lagenorhynchus obliquidens was the most numerous small cetacean in early June, but was rare during August. The model explained 44.5% of the variation in their occurrence pattern, which was best described by distance to the upwelling front and acoustic backscatter at 38 kHz. The model of the occurrence pattern of Dall's porpoise Phocoenoides dalli was more successful when mesoscale variability in the CCS was higher during summer. Thus, the responses of cetaceans to biophysical features and upwelling processes in the northern CCS were both seasonally and spatially specific. Heceta Bank and associated flow-topography interactions were very important to a cascade of trophic dynamics that ultimately influenced the distribution of foraging cetaceans. The higher productivity associated with upwelling near Cape Blanco also had a strong influence on the distribution of cetaceans.

Diagnostic Imaging and Newer Modalities for Thoracic Diseases: PET/Computed Tomographic Imaging and Endobronchial Ultrasound for Staging and Its Implication for Lung Cancer.

PubMed

Counts, Sarah J; Kim, Anthony W

2017-08-01

Modalities to detect and characterize lung cancer are generally divided into those that are invasive [endobronchial ultrasound (EBUS), esophageal ultrasound (EUS), and electromagnetic navigational bronchoscopy (ENMB)] versus noninvasive [chest radiography (CXR), computed tomography (CT), positron emission tomography (PET), and magnetic resonance imaging (MRI)]. This chapter describes these modalities, the literature supporting their use, and delineates what tests to use to best evaluate the patient with lung cancer. Copyright © 2017 Elsevier Inc. All rights reserved.

Nitrogen uptake of phytoplankton assemblages under contrasting upwelling and downwelling conditions: The Ría de Vigo, NW Iberia

NASA Astrophysics Data System (ADS)

Seeyave, Sophie; Probyn, Trevor; Álvarez-Salgado, Xosé Antón; Figueiras, Francisco G.; Purdie, Duncan A.; Barton, Eric D.; Lucas, Michael

2013-06-01

Regenerated production (including organic nitrogen) is shown here to be important in the Ría de Vigo (Galicia, NW Iberia) in supporting both harmful algal bloom communities during the downwelling season, but also (to a lesser extent) diatom communities during stratified periods of weak to moderate upwelling. The Galician Rías, situated in the Iberian upwelling system, are regularly affected by blooms of toxic dinoflagellates, which pose serious threats to the local mussel farming industry. These tend to occur towards the end of summer, during the transition from upwelling to downwelling favourable seasons, when cold bottom shelf waters in the rías are replaced by warm surface shelf waters. Nitrate, ammonium and urea uptake rates were measured in the Ría de Vigo during a downwelling event in September 2006 and during an upwelling event in June 2007. In September the ría was well mixed, with a downwelling front observed towards the middle of the ría and relatively high nutrient concentrations (1.0-2.6 μmol L-1 nitrate; 1.0-5.6 μmol L-1 ammonium; 0.1-0.8 μmol L-1 phosphate; 2.0-9.0 μmol L-1 silicic acid) were present throughout the water column. Ammonium represented more than 80% of the nitrogenous nutrients, and the phytoplankton assemblage was dominated by dinoflagellates and small flagellates. In June the water column was stratified, with nutrient-rich, upwelled water below the thermocline and warm, nutrient-depleted water in the surface. At this time, nitrate represented more than 80% of the nitrogenous nutrients, and a mixed diatom assemblage was present. Primary phytoplankton production during both events was mainly sustained by regenerated nitrogen, with ammonium uptake rates of 0.035-0.063 μmol N L-1 h-1 in September and 0.078-0.188 μmol N L-1 h-1 in June. Although f-ratios were generally low (<0.2) in both June and September, a maximum of 0.61 was reached in June due to higher nitrate uptake (0.225 μmol N L-1 h-1). Total nitrogen uptake was also higher during the upwelling event (0.153-0.366 in June and 0.053-0.096 μmol N L-1 h-1 in September). Nitrogen uptake kinetics demonstrated a strong preference for ammonium and urea over nitrate in June.

A Numerical Study of the Effect of Periodic Nutrient Supply on Pathways of Carbon in a Coastal Upwelling Regime

NASA Technical Reports Server (NTRS)

Carr, Mary-Elena

1998-01-01

A size-based ecosystem model was modified to include periodic upwelling events and used to evaluate the effect of episodic nutrient supply on the standing stock, carbon uptake, and carbon flow into mesozooplankton grazing and sinking flux in a coastal upwelling regime. Two ecosystem configurations were compared: a single food chain made up of net phytoplankton and mesozooplankton (one autotroph and one heterotroph, A1H1), and three interconnected food chains plus bacteria (three autotrophs and four heterotrophs, A3H4). The carbon pathways in the A1H1 simulations were under stronger physical control than those of the A3H4 runs, where the small size classes are not affected by frequent upwelling events. In the more complex food web simulations, the microbial pathway determines the total carbon uptake and grazing rates, and regenerated nitrogen accounts for more than half of the total primary production for periods of 20 days or longer between events. By contrast, new production, export of carbon through sinking and mesozooplankton grazing are more important in the A1H1 simulations. In the A3H4 simulations, the turnover time scale of the autotroph biomass increases as the period between upwelling events increases, because of the larger contribution of slow-growing net phytoplankton. The upwelling period was characterized for three upwelling sites from the alongshore wind speed measured by the NASA Scatterometer (NSCAT) and the corresponding model output compared with literature data. This validation exercise for three upwelling sites and a downstream embayment suggests that standing stock, carbon uptake and size fractionation were best supported by the A3H4 simulations, while the simulated sinking fluxes are not distinguishable in the two configurations.

High frequency responses of nanoplankton and microplankton to wind-driven upwelling off northern Chile

NASA Astrophysics Data System (ADS)

Aguilera, Victor; Escribano, Ruben; Herrera, Liliana

2009-08-01

Autotrophic and heterotrophic nanoplankton and microplankton vary widely in quantity and composition in coastal upwelling zones, causing a highly heterogeneous distribution of food resources for higher trophic levels. Here, we assessed daily changes in size-fractioned biomass and community structure of nanoplankton and microplankton at two upwelling sites off northern Chile, Mejillones (23°S) and Chipana (21°S), during summer 2006, winter 2006 and summer 2007 as related to changes in oceanographic conditions upon upwelling variation. We found highly-significant changes in quantity and community structure (species diversity and richness) of both nanoplankton and microplankton fractions after 3-5 days of observations. These changes were coupled to an intermittent upwelling regime reflected in the alongshore component of the wind. After a few days the whole community was modified in terms of species and size structure. Over-imposing this variability, during winter 2006 there was a strong perturbation of remote origin that substantially impacted temperature, oxygenation and stratification of the water column. This "abnormal" warming event altered the upwelling regime, but its impact on abundance and composition of the nanoplankton and microplankton fractions was uncertain. Over the short-time scale however, we found a strong coupling between daily changes in the alongshore component of wind and nanoplankton and microplankton abundances and their structure. All these findings indicate that despite the high biological productivity of this upwelling region, high frequency variation induced by wind forcing may be a major regulator of food resources (quantity and quality) for primary consumers, such as zooplankton, fish larvae and benthic organisms in the near-shore area. This high frequency variation may also impose a key constrain for prey-predator encounter rates and survival of short-lived zooplankton and invertebrate and fish larvae in the upwelling zone.

40 CFR 451.21 - Effluent limitations attainable by the application of the best practicable control technology...

Code of Federal Regulations, 2012 CFR

2012-07-01

... Protection of Environment ENVIRONMENTAL PROTECTION AGENCY (CONTINUED) EFFLUENT GUIDELINES AND STANDARDS... as video cameras, digital scanning sonar, and upweller systems; monitoring of sediment quality...

40 CFR 451.21 - Effluent limitations attainable by the application of the best practicable control technology...

Code of Federal Regulations, 2014 CFR

2014-07-01

... Protection of Environment ENVIRONMENTAL PROTECTION AGENCY (CONTINUED) EFFLUENT GUIDELINES AND STANDARDS... as video cameras, digital scanning sonar, and upweller systems; monitoring of sediment quality...

40 CFR 451.21 - Effluent limitations attainable by the application of the best practicable control technology...

Code of Federal Regulations, 2013 CFR

2013-07-01

... Protection of Environment ENVIRONMENTAL PROTECTION AGENCY (CONTINUED) EFFLUENT GUIDELINES AND STANDARDS... as video cameras, digital scanning sonar, and upweller systems; monitoring of sediment quality...

A Biogeochemical Oceanographer at Sea: My Life with Nitrogen and a Nod to Silica

NASA Astrophysics Data System (ADS)

Dugdale, Richard C.

2018-01-01

My evolution from electrical engineering student to limnologist and then to oceanographer was a consequence of generous mentoring, which led to my use of the 15N tracer technique to measure nitrogen fixation in aquatic systems. The concept of new and regenerated production arose when I applied this method to measure nitrate and ammonium uptake in marine ecosystems. I then showed that enzyme kinetics could be applied to algal nitrogen uptake and used a silicate pump to explain silicate limitation of diatoms in coastal and equatorial upwelling systems. These concepts are now recognized as modern nutrient paradigms in biogeochemical oceanography. My interest in nutrients required field studies and led to my passion for the study of upwelling ecosystems and the establishment of two major international programs, with numerous advisors, collaborators, and students helping along the way.

Warming and Cooling: The Medieval Climate Anomaly in Africa and Arabia

NASA Astrophysics Data System (ADS)

Lüning, Sebastian; Gałka, Mariusz; Vahrenholt, Fritz

2017-11-01

The Medieval Climate Anomaly (MCA) is a well-recognized climate perturbation in many parts of the world, with a core period of 1000-1200 Common Era. Here we present a palaeotemperature synthesis for the MCA in Africa and Arabia, based on 44 published localities. The data sets have been thoroughly correlated and the MCA trends palaeoclimatologically mapped. The vast majority of available Afro-Arabian onshore sites suggest a warm MCA, with the exception of the southern Levant where the MCA appears to have been cold. MCA cooling has also been documented in many segments of the circum-Africa-Arabian upwelling systems, as a result of changes in the wind systems which were leading to an intensification of cold water upwelling. Offshore cores from outside upwelling systems mostly show warm MCA conditions. The most likely key drivers of the observed medieval climate change are solar forcing and ocean cycles. Conspicuous cold spikes during the earliest and latest MCA may help to discriminate between solar (Oort Minimum) and ocean cycle (Atlantic Multidecadal Oscillation, AMO) influence. Compared to its large share of nearly one quarter of the world's landmass, data from Africa and Arabia are significantly underrepresented in global temperature reconstructions of the past 2,000 years. Onshore data are still absent for most regions in Africa and Arabia, except for regional data clusters in Morocco, South Africa, the East African Rift, and the Levant coast. In order to reconstruct land palaeotemperatures more robustly over Africa and Arabia, a systematic research program is needed.

Linkages Between Upwelling and Shell Characteristics of Mytilus californianus: Morphology and Stable Isotope (δ13C, δ18O) Signatures of a Carbonate Archive from the California Current

NASA Astrophysics Data System (ADS)

Hosfelt, J. D.; Hill, T. M.; Russell, A. D.; Bean, J. R.; Sanford, E.; Gaylord, B.

2014-12-01

Many calcareous organisms are known to record the ambient environmental conditions in which they grow, and their calcium carbonate skeletons are often valuable archives of climate records. Mytilus californianus, a widely distributed species of intertidal mussel, experiences a spatial mosaic of oceanographic conditions as it grows within the California Current System. Periodic episodes of upwelling bring high-CO2 waters to the surface, during which California coastal waters are similar to projected conditions and act as a natural analogue to future ocean acidification. To examine the link between upwelling and shell characteristics of M. californianus, we analyzed the morphology and stable isotope (δ13C, δ18O) signatures of mussel specimens collected live from seven study sites within the California Current System. Morphometric analyses utilized a combination of elliptic Fourier analysis and shell thickness measurements to determine the influence of low pH waters on the growth morphology and ecological fitness of M. californianus. These geochemical and morphological analyses were compared with concurrent high-resolution environmental (T, S, pH, TA, DIC) records from these seven study sites from 2010-2013. With appropriate calibration, new archives from modern M. californianus shells could provide a valuable tool to enable environmental reconstructions within the California Current System. These archives could in turn be used to predict the future consequences of continuing ocean acidification, as well as reconstruct past (archeological) conditions.

Abyssal Upwelling and Downwelling and the role of boundary layers

NASA Astrophysics Data System (ADS)

McDougall, T. J.; Ferrari, R. M.

2016-02-01

The bottom-intensified mixing activity arising from the interaction of internal tides with bottom topography implies that the dianeutral advection in the ocean interior is downwards, rather than upwards as is required by continuity. The upwelling of Bottom Water through density surfaces in the deep ocean is however possible because of the sloping nature of the sea floor. A budget study of the abyss (deeper than 2000m) will be described that shows that while the upwelling of Bottom Water might be 25 Sv, this is achieved by very strong upwelling in the bottom turbulent boundary layer (of thickness 50m) of 100 Sv and strong downwelling in the ocean interior of 75 Sv. This downwelling occurs within 10 degrees of longitude of the continental boundaries. This near-boundary confined strong upwelling and downwelling clearly has implications for the Stommel-Arons circulation.

A cool upwelling filament off Namibia, southwest Africa: preliminary measurements of physical and biological features

NASA Astrophysics Data System (ADS)

Shillington, F. A.; Peterson, W. T.; Hutchings, L.; Probyn, T. A.; Waldron, H. N.; Agenbag, J. J.

1990-11-01

Mesoscale physical and biological measurements were made in a cool upwelling filament in the Benguela Current system, off Namibia in February 1988. The filament had been visible on a satellite infra-red image 2 weeks prior to the survey, and was found to be in a decaying state. Temperature, salinity, 0-50 m integratred nitrate, ammonium, oxygen and plankton data have enabled a consistent picture of the structure to be formed, involving four different water bodies. These are (1) typical continental shelf upwelled water inside the shelf break, (2) filament water characterized by salinity of 35.2, high surface integrated nitrate, small phytoplankton cells, and large numbers of salps, (3) warm, blue oligotrophic water to the north, and (4) a warm, high salinity anticyclonic eddy to the south. It is suggested that this southern eddy may have originated from the Agulhas Current near Cape Town. Anomalously low nitrate concentrations, that could not be explained, were found in a 100 m thick layer between 100 and 200 m depth on the southern edge of the structure.

Boundary current instabilities, upwelling, shelf mixing and eutrophication processes in the Black Sea

NASA Astrophysics Data System (ADS)

Sur, Hali˙l. İ.; Özsoy, Emi˙n.; Ünlüata, Ümi˙t.

Satellite and in situ data are utilized to investigate the mesoscale dynamics of the Black Sea boundary current system with special emphasis on aspects of transport and productivity. The satellite data are especially helpful in capturing rapid sub-mesoscale motions insufficiently resolved by the in situ measurements. Various forms of isolated features, including dipole eddies and river plumes, are identified in the satellite images. Unstable flow structures at these sites appear to transport materials and momentum across the continental shelf. Species differentiation and competition are evident along the boundary current system and at the frontal regions during the development of early summer productivity. A time series of Coastal Zone Colour Scanner (CZCS) images indicate dynamical modulation of the springtime surface productivity in the southern Black Sea. Unstable meandering motions generated at Sakarya Canyon propagate east with speeds of ∼10-15 km d -1. Within weeks, a turbulent jet is created which separates from the coast, covering the entire southwestern sector. The nutrients driving the phytoplankton production (mainly Emiliana huxleyi) of the current system evidently originate from fluvial discharge entering from the northwestern region including the Danube river. The productivity pattern develops in early summer when the Danube inflow is at its peak, and through meandering motions spreads into an area several times wider than the continental shelf. In 1980, the CZCS data, and in 1991 and 1992, the Advanced Very High Resolution Radiometer (AVHRR) data indicate patches of upwelling along the west Anatolian coastline between Sakarya Canyon and Cape İnce ( Ince Burun) in summer. The upwelling phenomenon is outstanding because it occurs on a coast where normally the surface convergence near the coast implies downwelling, and under conditions of unfavorable winds. In 1992, the hydrographic data indicated the upwelling to be the result of a surface divergence of the boundary current, and sequences of satellite data indicate the role of transient dynamics. The in situ data showed the upwelling centres to be devoid of phytoplankton as well as fish eggs and larvae. The AVHRR and in situ hydrographic data in winter 1990 indicate cold water is formed over the entire western Black Sea continental shelf. The band of cold water decreases in width as it moves south and impinges on the headland at Baba Burnu, where it undergoes a sudden expansion. The maximum winter phytoplankton bloom sampled during the same period indicates explosive populations of diatoms following the band of cold water.

Ocean response to typhoons in the western North Pacific: Composite results from Argo data

NASA Astrophysics Data System (ADS)

Lin, Sheng; Zhang, Wen-Zhou; Shang, Shao-Ping; Hong, Hua-Sheng

2017-05-01

Composite structures of ocean temperature and salinity anomalies caused by tropical cyclones (TCs) or typhoons in the western North Pacific Ocean were obtained from Argo data. These structures were used to analyze ocean responses to typhoons and the dynamic mechanisms inherent in those responses with a particular focus on upwelling. TC-induced cooling is often strongly rightward-biased in the surface layer, and shifts toward the typhoon track at depths exceeding roughly 100 m. In the central water column within approximately 75 km of the typhoon track, subsurface warming predicted by vertical mixing is restrained and replaced by cooling due to upwelling. Upwelling contributes 15% on average to temperature cooling in the near surface layer (10-30 m), 84% in the subsurface layer (30-250 m) and 94% in the deep layer (250-600 m) during the period of 0.5-2.5 days after the typhoon's passage. It is suggested that the sea surface cooling effect of vertical mixing can be enhanced by the upwelling. The effect of upwelling is also prominent in the salinity response to typhoons. The composite results from the Argo data clearly reveal basic ocean responses to typhoons and indicate the important role of upwelling therein.

Macro-Scale Patterns in Upwelling/Downwelling Activity at North American West Coast

PubMed Central

Saldívar-Lucio, Romeo; Di Lorenzo, Emanuele; Nakamura, Miguel; Villalobos, Héctor; Lluch-Cota, Daniel; Del Monte-Luna, Pablo

2016-01-01

The seasonal and interannual variability of vertical transport (upwelling/downwelling) has been relatively well studied, mainly for the California Current System, including low-frequency changes and latitudinal heterogeneity. The aim of this work was to identify potentially predictable patterns in upwelling/downwelling activity along the North American west coast and discuss their plausible mechanisms. To this purpose we applied the min/max Autocorrelation Factor technique and time series analysis. We found that spatial co-variation of seawater vertical movements present three dominant low-frequency signals in the range of 33, 19 and 11 years, resembling periodicities of: atmospheric circulation, nodal moon tides and solar activity. Those periodicities might be related to the variability of vertical transport through their influence on dominant wind patterns, the position/intensity of pressure centers and the strength of atmospheric circulation cells (wind stress). The low-frequency signals identified in upwelling/downwelling are coherent with temporal patterns previously reported at the study region: sea surface temperature along the Pacific coast of North America, catch fluctuations of anchovy Engraulis mordax and sardine Sardinops sagax, the Pacific Decadal Oscillation, changes in abundance and distribution of salmon populations, and variations in the position and intensity of the Aleutian low. Since the vertical transport is an oceanographic process with strong biological relevance, the recognition of their spatio-temporal patterns might allow for some reasonable forecasting capacity, potentially useful for marine resources management of the region. PMID:27893826

Mass-specific respiration of mesozooplankton and its role in the maintenance of an oxygen-deficient ecological barrier (BEDOX) in the upwelling zone off Chile upon presence of a shallow oxygen minimum zone

NASA Astrophysics Data System (ADS)

Donoso, Katty; Escribano, Ruben

2014-01-01

A shallow oxygen minimum zone (OMZ) in the coastal upwelling zone off Chile may vertically confine most zooplankton to a narrow (< 50 m) upper layer. From laboratory experiments, we estimated oxygen consumption of the mesozooplankton community obtained in Bay of Mejillones, northern Chile (23°S) in May 2010, December 2010 and August 2011. Mass-specific respiration rates were in the range of 8.2-24.5 μmol O2 mg dry mass- 1 day- 1, at an average temperature of 12 °C. Estimates of the mesozooplankton biomass in the water column indicated that its aerobic respiration may remove daily a maximum of about 20% of oxygen available at the base of the oxycline. Since previous work indicates that zooplankton aggregate near the base of the oxycline, the impact of aerobic respiration on oxygen content might be even stronger at this depth. Mesozooplankton respiration, along with community respiration by microorganisms near the base of the oxycline and a strongly stratified condition (limiting vertical flux of O2), are suggested as being critical factors causing and maintaining a persistent subsurface oxygen-deficient ecological barrier (BEDOX) in the upwelling zone. This BEDOX layer can have a major role in affecting and regulating zooplankton distribution and their dynamics in the highly productive coastal upwelling zone of the Humboldt Current System.

Transformation of Deep Water Masses Along Lagrangian Upwelling Pathways in the Southern Ocean

NASA Astrophysics Data System (ADS)

Tamsitt, V.; Abernathey, R. P.; Mazloff, M. R.; Wang, J.; Talley, L. D.

2018-03-01

Upwelling of northern deep waters in the Southern Ocean is fundamentally important for the closure of the global meridional overturning circulation and delivers carbon and nutrient-rich deep waters to the sea surface. We quantify water mass transformation along upwelling pathways originating in the Atlantic, Indian, and Pacific and ending at the surface of the Southern Ocean using Lagrangian trajectories in an eddy-permitting ocean state estimate. Recent related work shows that upwelling in the interior below about 400 m depth is localized at hot spots associated with major topographic features in the path of the Antarctic Circumpolar Current, while upwelling through the surface layer is more broadly distributed. In the ocean interior upwelling is largely isopycnal; Atlantic and to a lesser extent Indian Deep Waters cool and freshen while Pacific deep waters are more stable, leading to a homogenization of water mass properties. As upwelling water approaches the mixed layer, there is net strong transformation toward lighter densities due to mixing of freshwater, but there is a divergence in the density distribution as Upper Circumpolar Deep Water tends become lighter and dense Lower Circumpolar Deep Water tends to become denser. The spatial distribution of transformation shows more rapid transformation at eddy hot spots associated with major topography where density gradients are enhanced; however, the majority of cumulative density change along trajectories is achieved by background mixing. We compare the Lagrangian analysis to diagnosed Eulerian water mass transformation to attribute the mechanisms leading to the observed transformation.

Transmission of the haplosporidian parasite MSX Haplosporidium nelsoni to the eastern oyster Crassostrea virginica in an upweller system.

PubMed

Sunila, I; Karolus, J; Lang, E P; Mroczka, M E; Volk, J

2000-08-31

The haplosporidian oyster parasite MSX (Multinucleated Sphere X) Haplosporidium nelsoni was transmitted to eastern oysters Crassostrea virginica. Hatchery-raised, MSX-free juvenile oysters were placed in upweller tanks. Water to the tanks was filtered through a screen with 1 mm2 openings and originated from the water column overlaying naturally infected oysters beds (MSX prevalence 17 to 57%). MSX was diagnosed by histopathological analysis. MSX-disease (57% prevalence) with increased mortality (19%) was observed 11 wk after the beginning of the exposure and mortality of 80% after 16 wk. The study demonstrates transmission of MSX via water-borne infectious agents capable of passing through a 1 mm filter.

Kinematic and diabatic vertical velocity climatologies from a chemistry climate model

NASA Astrophysics Data System (ADS)

Marinke Hoppe, Charlotte; Ploeger, Felix; Konopka, Paul; Müller, Rolf

2016-05-01

The representation of vertical velocity in chemistry climate models is a key element for the representation of the large-scale Brewer-Dobson circulation in the stratosphere. Here, we diagnose and compare the kinematic and diabatic vertical velocities in the ECHAM/Modular Earth Submodel System (MESSy) Atmospheric Chemistry (EMAC) model. The calculation of kinematic vertical velocity is based on the continuity equation, whereas diabatic vertical velocity is computed using diabatic heating rates. Annual and monthly zonal mean climatologies of vertical velocity from a 10-year simulation are provided for both kinematic and diabatic vertical velocity representations. In general, both vertical velocity patterns show the main features of the stratospheric circulation, namely, upwelling at low latitudes and downwelling at high latitudes. The main difference in the vertical velocity pattern is a more uniform structure for diabatic and a noisier structure for kinematic vertical velocity. Diabatic vertical velocities show higher absolute values both in the upwelling branch in the inner tropics and in the downwelling regions in the polar vortices. Further, there is a latitudinal shift of the tropical upwelling branch in boreal summer between the two vertical velocity representations with the tropical upwelling region in the diabatic representation shifted southward compared to the kinematic case. Furthermore, we present mean age of air climatologies from two transport schemes in EMAC using these different vertical velocities and analyze the impact of residual circulation and mixing processes on the age of air. The age of air distributions show a hemispheric difference pattern in the stratosphere with younger air in the Southern Hemisphere and older air in the Northern Hemisphere using the transport scheme with diabatic vertical velocities. Further, the age of air climatology from the transport scheme using diabatic vertical velocities shows a younger mean age of air in the inner tropical upwelling branch and an older mean age in the extratropical tropopause region.

Re-Emergence of Excess Bomb Radiocarbon in Upwelling Waters with High-Latitude Origins

NASA Astrophysics Data System (ADS)

Lindsay, C. M.; Lehman, S.

2016-02-01

The quantity of radiocarbon (14C) in the atmosphere was nearly doubled by nuclear weapons testing in the 1960s. Since then, the terrestrial biosphere and the ocean have absorbed most of the excess 14C from the atmosphere, although atmospheric radiocarbon activity (∆14C) continues to decline due to ongoing emissions of 14C-free CO2 from combustion of fossil fuels. The large transient decline in atmospheric ∆14C combined with gas exchange at the surface and spatially variable time scales of ocean mixing have led to large ∆14C gradients in the surface ocean between upwelling- and downwelling-dominated regions. These gradients continue to evolve over time. We examine the rate of change of surface ocean ∆14C between CLIVAR (2000-2011) and WOCE era (1990s) or other slightly earlier (1980s) datasets and find spatial patterns that reveal mixing between 14C-enriched mode waters, 14C-depleted deep waters and surface waters that are well-equilibrated with the atmosphere. The ∆14C of mode water reaching equatorial upwelling regions has increased between the WOCE and CLIVAR time periods, and the greater contribution of 14C to the low-latitude surface ocean appears to have significantly offset the ∆14C decline otherwise imparted by air-sea gas exchange with the atmosphere. Consequently, ∆14C gradients between low-latitude upwelling regions and gyre centers have weakened proportionally more than between gyre centers and regions where pre-industrial water still upwells, such as the Southern Ocean. Properly accounting for the re-emergence of water with post-industrial characteristics is important to constrain earth system models that seek to explain DIC, pH and other anthropogenically perturbed tracers in the surface ocean. Because of the history of ∆14C in the atmosphere, ocean ∆14C is a useful tracer for this purpose.

The ichthyoplankton assemblage of the Canaries-African Coastal Transition Zone: A review

NASA Astrophysics Data System (ADS)

Rodriguez, J. M.; Moyano, M.; Hernandez-Leon, S.

2009-12-01

In this paper we review information on the ichthyoplankton assemblage of the Canaries-African Coastal Transition Zone (C-ACTZ). This CTZ shows the singularity that the Canary Archipelago interrupts the main flow of the Canary Current and Trade Winds, introducing large mesoscale variability, in the form of island warm wakes and cyclonic and anticyclonic eddies downstream of the islands. Besides, upwelling filaments stretch towards the archipelago from the African coastal upwelling, transporting phytoplankton, zooplankton and fish larvae. They also interact with eddies shed from the islands to exchange water properties and biogenic material. All these mesoscale features influence the composition, structure, abundance and distribution of the larval fish community (LFC) of the region. The Canary Current (CC) and eddies shed from the islands drag larvae of island neritic fish species into the oceanic region and contribute, along warm wakes, to the horizontal distribution of fish larvae. Upwelling and upwelling filaments transport larvae of African neritic species into the oceanic region. These larvae dominate the LFC and account for the relatively high average larval fish abundance found in the C-ACTZ during the summer upwelling season. Filaments originated in the region of Cape Juby-Cape Bojador are entrained around a quasi-permanent cyclonic eddy, trapped between Gran Canaria Island and the African coast, forming a system through which most of the African neritic larvae may return to the African shelf. However, some larvae reach the eastern islands of the Canary archipelago and they may be spread all over the neritic region of the archipelago by eddies shed from the islands. Also in summer, the distribution of the LFC of the C-ACTZ is vertically stratified and fish larvae seem to carry out little or not diel vertical migration. Overall, this study highlights the strong relationship between mesoscale oceanographic processes and the LFC in the C-ACTZ.

Computer Modeling to Evaluate the Impact of Technology Changes on Resident Procedural Volume.

PubMed

Grenda, Tyler R; Ballard, Tiffany N S; Obi, Andrea T; Pozehl, William; Seagull, F Jacob; Chen, Ryan; Cohn, Amy M; Daskin, Mark S; Reddy, Rishindra M

2016-12-01

As resident "index" procedures change in volume due to advances in technology or reliance on simulation, it may be difficult to ensure trainees meet case requirements. Training programs are in need of metrics to determine how many residents their institutional volume can support. As a case study of how such metrics can be applied, we evaluated a case distribution simulation model to examine program-level mediastinoscopy and endobronchial ultrasound (EBUS) volumes needed to train thoracic surgery residents. A computer model was created to simulate case distribution based on annual case volume, number of trainees, and rotation length. Single institutional case volume data (2011-2013) were applied, and 10 000 simulation years were run to predict the likelihood (95% confidence interval) of all residents (4 trainees) achieving board requirements for operative volume during a 2-year program. The mean annual mediastinoscopy volume was 43. In a simulation of pre-2012 board requirements (thoracic pathway, 25; cardiac pathway, 10), there was a 6% probability of all 4 residents meeting requirements. Under post-2012 requirements (thoracic, 15; cardiac, 10), however, the likelihood increased to 88%. When EBUS volume (mean 19 cases per year) was concurrently evaluated in the post-2012 era (thoracic, 10; cardiac, 0), the likelihood of all 4 residents meeting case requirements was only 23%. This model provides a metric to predict the probability of residents meeting case requirements in an era of changing volume by accounting for unpredictable and inequitable case distribution. It could be applied across operations, procedures, or disease diagnoses and may be particularly useful in developing resident curricula and schedules.

Larval fish assemblages across an upwelling front: Indication for active and passive retention

NASA Astrophysics Data System (ADS)

Tiedemann, Maik; Brehmer, Patrice

2017-03-01

In upwelling areas, enrichment, concentration and retention are physical processes that have major consequences for larval fish survival. While these processes generally increase larval survival, strong upwelling can also increase mortality due to an offshore transport of larvae towards unfavorable habitats. In 2013 a survey was conducted along the Senegalese coast to investigate the upwelling effect with regard to larval fish assemblages and possible larval fish retention. According to water column characteristics two distinct habitats during an upwelling event were discriminated, i.e. the inshore upwelled water and the transition area over the deepest part of the Senegalese shelf. Along the two areas 42,162 fish larvae were collected representing 133 species within 40 families. Highest larval fish abundances were observed in the inshore area and decreasing abundances towards the transition, indicating that certain fish species make use of the retentive function of the inner shelf area as spawning grounds. Two larval fish assemblages overlap both habitats, which are sharply delimited by a strong upwelling front. One assemblage inhabited the inshore/upwelling area characterized by majorly neritic and pelagic species (Sparidae spp., Sardinella aurita), that seem to take the advantage of a passive retention on the shelf. The second assemblage consisted of a mix of pelagic and mesopelagic species (Engraulis encrasicolus, Carangidae spp. and Myctophidae spp.). Some species of the second assemblage, e.g. horse mackerels (Trachurus trachurus and Trachurus trecae), large finned-lantern fish (Hygophum macrochir) and foureyed sole (Microchirus ocellatus), revealed larval peak occurrences at intermediate and deep water layers, where the near-ground upwelling layer is able to transport larvae back to the shelf. This indicates active larval retention for species that are dominant in the transition area. Diel vertical migration patterns of S. aurita, E. encrasicolus and M. ocellatus revealed that a larval fish species may adapt its behavior to the local environment and do not necessarily follow a diurnal cycle. Field observations are essential to be integrated in larval drift models, since the vertical and horizontal larval distribution will have major consequences for survival. Comprehending larval survival mechanisms is necessary for the ultimate goal to understand and predict recruitment.

Biogenic sedimentation beneath the California Current system for the past 30 kyr and its paleoceanographic significance

USGS Publications Warehouse

Gardner, J.V.; Dean, W.E.; Dartnell, P.

1997-01-01

A north-south transect of 17 cores was constructed along the eastern boundary of the California Current system from 33?? to 42?? N to investigate the changes in biogenic sedimentation over the past 30 kyr. Percentages and mass accumulation rates of CaCO3, Corg, and biogenic opal were assembled at 500 to 1000 years/sample to provide relatively high resolution. Time-space maps reveal a complex pattern of changes that do not follow a simple glacial-interglacial two-mode model. Biogenic sedimentation shows responses that are sometimes time-transgressive and sometimes coeval, and most of the responses show more consistency within a limited geographic area than any temporal consistency. Reconstructed conditions during late oxygen isotope stage 3 were more like early Holocene conditions than any other time during the last 30 kyr. Coastal upwelling and productivity during oxygen isotope stage 3 were relatively strong along the central California margin but were weak along the northern California margin. Precipitation increased during the last glacial interval in the central California region, and the waters of the southern California margin had relatively low productivity. Productivity on the southern Oregon margin was relatively low at the beginning of the last glacial interval, but by about 20 ka, productivity in this area significantly increased. This change suggests that the center of the divergence of the West Wind Drift shifted south at this time. The end of the last glacial interval was characterized by increased productivity in the southern California margin and increased upwelling along the central California margin but upwelling remained weak along the northern California margin. A sudden (<300 years) decrease in CaCO3, Corg, and biogenic opal occurred at 13 ka. The changes suggest a major reorientation of the atmospheric circulation in the North Pacific and western North America and the establishment of a strong seasonality in the central California region. A carbonate preservation event occurred at 10 ka that appears to reflect the uptake of CO2 by the terrestrial biosphere as the northern latitudes were reforested following retreat of the glaciers. The Holocene has been a period of relatively high productivity in the southern California margin, relatively strong coastal upwelling along the central California margin, relatively weak upwelling along the northern California margin, and the northward migration of the divergence zone of the West Wind Drift.

Oceanographic implications of the Cabo Catoche (Northeast Yucatan) upwelling and its effects on the coastal ecosystem

NASA Astrophysics Data System (ADS)

Reyes-Mendoza, O.; Marino-Tapia, I.; Herrera Silveira, J.; Cárdenas-Palómo, N.; Ruiz, G.

2013-05-01

The coasts of the world where upwelling events occur are intrinsically related to the human population, mainly because of their large fisheries, socioeconomic repercussion and implications concerning the health of the ecosystem. In the northeast of the Yucatan Peninsula occurs an upwelling event known as the Yucatan upwelling (YU) associated with the current of the same name. The mechanisms that generate the YU are still under discussion. In terms of seasonality it is agreed that this is annual, occurring between April and September. During spring and summer, the northeast coast of the Peninsula between CaboCatoche and Isla Contoy becomes a productive and diverse pelagic ecosystem, unique to the region. It is classified as a priority marine zone host to close to 59 species protected by the national laws. It is also recognized as an important priority marine site because of its fishery. Also, the largest global aggregation of whale sharks, the world's biggest fish, is found at this site. There is a strong connection between the physical and the biological components of the system, however the coastal extent, seasonality, and magnitude of these processes need to be determined. Therefore an in-situ study was designed in the coastal region of CaboCatoche, where a 50 km transect was positioned along shelf and another across shelf 20 km, where water was collected to determine nutrient concentrations and CTD profiles were casted during the summer of 2007, 2008 and 2011. Two acoustic profilers were installed 12 km from the coast, which recorded currents and temperature by 2 years. Another profiler located 17 km from the coast to recorded data by 8 years. Atmospheric pressure and temperature were measured, as a wind fields from NOAA. Maps were created for the vertical distribution of temperature (18-31°C), salinity (35-38 psu), density (22-27 kg/m3) and chlorophyll (0.05-12.7 mg/m3). Frequency periods were estimated for temperature, currents, wind and atmospheric pressure using spectral analysis and wavelets. In order to establish associations between the physical, chemical and biological variables multivariate analyses were performed. Based in temperature the results indicate that the upwelling occurs in pulses of two different time periods; 2-4 days and the other 8 to16 days, from March to September, associated with a decrease in sea level (-0.008±0.03 m) and variation in the V component of the current (0.007±0.006 m/s to the north). On the year the dominant tides are diurnal K1, O1 and semidiurnal M2, S2, and the U and V current component had the same periodicity during upwelling, but with not upwelling V hasn't it. The atmospheric temperature decreases the water column temperature near 10 degree during not upwelling, as also in upwelling but by other mechanisms. It is yet not possible to determine the mechanism responsible for this periodicity, however it is believed to be due to a combination of wind and Yucatan current variability. The Primary production has a response time of 2 to 3 days following the onset of the pulse and the Cla-a have an increase ten times more than the mean value.

Biogeochemical and ecological impacts of boundary currents in the Indian Ocean

NASA Astrophysics Data System (ADS)

Hood, Raleigh R.; Beckley, Lynnath E.; Wiggert, Jerry D.

2017-08-01

Monsoon forcing and the unique geomorphology of the Indian Ocean basin result in complex boundary currents, which are unique in many respects. In the northern Indian Ocean, several boundary current systems reverse seasonally. For example, upwelling coincident with northward-flowing currents along the coast of Oman during the Southwest Monsoon gives rise to high productivity which also alters nutrient stoichiometry and therefore, the species composition of the resulting phytoplankton blooms. During the Northeast Monsoon most of the northern Indian Ocean boundary currents reverse and favor downwelling. Higher trophic level species have evolved behavioral responses to these seasonally changing conditions. Examples from the western Arabian Sea include vertical feeding migrations of a copepod (Calanoides carinatus) and the reproductive cycle of a large pelagic fish (Scomberomorus commerson). The impacts of these seasonal current reversals and changes in upwelling and downwelling circulations are also manifested in West Indian coastal waters, where they influence dissolved oxygen concentrations and have been implicated in massive fish kills. The winds and boundary currents reverse seasonally in the Bay of Bengal, though the associated changes in upwelling and productivity are less pronounced. Nonetheless, their effects are observed on the East Indian shelf as, for example, seasonal changes in copepod abundance and zooplankton community structure. In contrast, south of Sri Lanka seasonal reversals in the boundary currents are associated with dramatic changes in the intensity of coastal upwelling, chlorophyll concentration, and catch per unit effort of fishes. Off the coast of Java, monsoon-driven changes in the currents and upwelling strongly impact chlorophyll concentrations, seasonal vertical migrations of zooplankton, and sardine catch in Bali Strait. In the southern hemisphere the Leeuwin is a downwelling-favorable current that flows southward along western Australia, though local wind forcing can lead to transient near shore current reversals and localized coastal upwelling. The poleward direction of this eastern boundary current is unique. Due to its high kinetic energy the Leeuwin Current sheds anomalous, relatively high chlorophyll, warm-core, downwelling eddies that transport coastal diatom communities westward into open ocean waters. Variations in the Leeuwin transport and eddy generation impact many higher trophic level species including the recruitment and fate of rock lobster (Panulirus cygnus) larvae. In contrast, the transport of the Agulhas Current is very large, with sources derived from the Mozambique Channel, the East Madagascar Current and the southwest Indian Ocean sub-gyre. Dynamically, the Agulhas Current is upwelling favorable; however, the spatial distribution of prominent surface manifestations of upwelling is controlled by local wind and topographic forcing. Meanders and eddies in the Agulhas Current propagate alongshore and interact with seasonal changes in the winds and topographic features. These give rise to seasonally variable localized upwelling and downwelling circulations with commensurate changes in primary production and higher trophic level responses. Due to the strong influence of the Agulhas Current, many neritic fish species in southeast Africa coastal waters have evolved highly selective behaviors and reproductive patterns for successful retention of planktonic eggs and larvae. For example, part of the Southern African sardine (Sardinops sagax) stock undergoes a remarkable northward migration enhanced by transient cyclonic eddies in the shoreward boundary of the Agulhas Current. There is evidence from the paleoceanographic record that these currents and their biogeochemical and ecological impacts have changed significantly over glacial to interglacial timescales. These changes are explored as a means of providing insight into the potential impacts of climate change in the Indian Ocean.

Patterns and processes in the California Current System

NASA Astrophysics Data System (ADS)

Checkley, David M., Jr.; Barth, John A.

2009-12-01

The California Current System (CCS) is forced by the distribution of atmospheric pressure and associated winds in relation to the west coast of North America. In this paper, we begin with a simplified case of winds and a linear coast, then consider variability characteristic of the CCS, and conclude by considering future change. The CCS extends from the North Pacific Current (∼50°N) to off Baja California, Mexico (∼15-25°N) with a major discontinuity at Point Conception (34.5°N). Variation in atmospheric pressure affects winds and thus upwelling. Coastal, wind-driven upwelling results in nutrification and biological production and a southward coastal jet. Offshore, curl-driven upwelling results in a spatially large, productive habitat. The California Current flows equatorward and derives from the North Pacific Current and the coastal jet. Dominant modes of spatial and temporal variability in physical processes and biological responses are discussed. High surface production results in deep and bottom waters depleted in oxygen and enriched in carbon dioxide. Fishing has depleted demersal stocks more than pelagic stocks, and marine mammals, including whales, are recovering. Krill, squid, and micronekton are poorly known and merit study. Future climate change will differ from past change and thus prediction of the CCS requires an understanding of its dynamics. Of particular concern are changes in winds, stratification, and ocean chemistry.

The California Current System

NASA Image and Video Library

2017-12-08

This February 8, 2016 composite image reveals the complex distribution of phytoplankton in one of Earth's eastern boundary upwelling systems — the California Current. Recent work suggests that our warming climate my be increasing the intensity of upwelling in such regions with possible repercussions for the species that comprise those ecosystems. NASA's OceanColor Web is supported by the Ocean Biology Processing Group (OBPG) at NASA's Goddard Space Flight Center. Our responsibilities include the collection, processing, calibration, validation, archive and distribution of ocean-related products from a large number of operational, satellite-based remote-sensing missions providing ocean color, sea surface temperature and sea surface salinity data to the international research community since 1996. Credit: NASA/Goddard/Suomin-NPP/VIIRS NASA image use policy. NASA Goddard Space Flight Center enables NASA’s mission through four scientific endeavors: Earth Science, Heliophysics, Solar System Exploration, and Astrophysics. Goddard plays a leading role in NASA’s accomplishments by contributing compelling scientific knowledge to advance the Agency’s mission. Follow us on Twitter Like us on Facebook Find us on Instagram

Local atmospheric forcing driving an unexpected California Current System response during the 2015-2016 El Niño

NASA Astrophysics Data System (ADS)

Frischknecht, Martin; Münnich, Matthias; Gruber, Nicolas

2017-01-01

The 2015-2016 El Niño contributed to large anomalies across the California Current System (CalCS), but these anomalies ceased unexpectedly in late 2015. Here we use a suite of three hindcast simulations with the Regional Oceanic Modeling System to assess the responsible mechanisms for this development. We find that the early buildup was primarily driven by the early onset of this event in the tropical Pacific, driving anomalies in the CalCS through the propagation of coastally trapped waves. In contrast, the abrupt end in the central CalCS was caused by the unusual onset of upwelling favorable winds in the fall of 2015, which offset the continuing remote forcing through the coastal waveguide. Nevertheless, low-nutrient anomalies persisted, causing anomalously low phytoplankton abundance in the upwelling season of 2016. This is a recurring pattern for all El Niño events over the last 37 years, suggesting predictive skill on seasonal timescales.

Geographical gradients in selection can reveal genetic constraints for evolutionary responses to ocean acidification

PubMed Central

Gaitán-Espitia, Juan Diego; Marshall, Dustin; Dupont, Sam; Bacigalupe, Leonardo D.; Bodrossy, Levente; Hobday, Alistair J.

2017-01-01

Geographical gradients in selection can shape different genetic architectures in natural populations, reflecting potential genetic constraints for adaptive evolution under climate change. Investigation of natural pH/pCO2 variation in upwelling regions reveals different spatio-temporal patterns of natural selection, generating genetic and phenotypic clines in populations, and potentially leading to local adaptation, relevant to understanding effects of ocean acidification (OA). Strong directional selection, associated with intense and continuous upwellings, may have depleted genetic variation in populations within these upwelling regions, favouring increased tolerances to low pH but with an associated cost in other traits. In contrast, diversifying or weak directional selection in populations with seasonal upwellings or outside major upwelling regions may have resulted in higher genetic variances and the lack of genetic correlations among traits. Testing this hypothesis in geographical regions with similar environmental conditions to those predicted under climate change will build insights into how selection may act in the future and how populations may respond to stressors such as OA. PMID:28148831

Tracking the Surface Circulation in Coastal Upwelling off Central and Northern California over Long Times and Large Areas.

NASA Astrophysics Data System (ADS)

Largier, J. L.; Garcia-Reyes, M.; Bjorkstedt, E.; Paduan, J. D.

2016-12-01

More than a decade of HF Radar data off central and northern California provides an unprecedented view of the flow structures and interannual variability in surface circulation in a coastal upwelling area. The interaction of the alongshore shelf jet with shoreline features and mesoscale eddies is well represented in direct analyses of HFR data and also important in improving the performance of data-assimilating models. While invaluable for operational response in the short-term, this long-term record of surface circulation is equally invaluable in ecosystem oceanography. With direct measurement of currents, the different expressions of upwelling can be disaggregated. Wind forcing, transport patterns and water properties can be evaluated independently and indexed independently. In doing this, it becomes clear that wind-current-temperature correlations change from place to place and year to year in any given region and that a single "upwelling index" is a blunt tool to track changes in pelagic and benthic communities in coastal upwelling areas.

Estimates of upwelling rates in the Arabian Sea and the equatorial Indian Ocean based on bomb radiocarbon.

PubMed

Bhushan, R; Dutta, K; Somayajulu, B L K

2008-10-01

Radiocarbon measurements were made in the water column of the Arabian Sea and the equatorial Indian Ocean during 1994, 1995 and 1997 to assess the temporal variations in bomb 14C distribution and its inventory in the region with respect to GEOSECS measurements made during 1977-1978. Four GEOSECS stations were reoccupied (three in the Arabian Sea and one in the equatorial Indian Ocean) during this study, with all of them showing increased penetration of bomb 14C along with decrease in its surface water activity. The upwelling rates derived by model simulation of bomb 14C depth profile using the calculated exchange rates ranged from 3 to 9 m a(-1). The western region of the Arabian Sea experiencing high wind-induced upwelling has higher estimated upwelling rates. However, lower upwelling rates obtained for the stations occupied during this study could be due to reduced 14C gradient compared to that during GEOSECS.

Upwelling changes along the Arabian coast in a warming scenario

NASA Astrophysics Data System (ADS)

Praveen, V.; Ravindran, A. M.; Valsala, V.; Sandeep, S.

2016-12-01

The oceanic impact of poleward shift in Monsoon Low-Level Jet (MLLJ) is examined using a regional ocean model (ROMS). Two sets of downscaling experiments were conducted using ROMS with boundary and initial conditions from six CMIP5 models. While outputs from the historical run (1981-2000) acts as forcing for the first, the second uses RCP8.5 (2080-2099). By comparing the outputs, it is found that Oman coast will experience an increase in upwelling in tune with MLLJ shift. Consistent with the changes in upwelling and zonal Ekman transport, temperature, salinity and productivity show significant changes near the Oman coast. The changes in MLLJ causes the coastal wind to angle against the Oman coast in such a fashion that the net upwelling increases in the next century and so does the marine productivity. This study contrasts the general view of weakening of upwelling along the Arabian coasts due to the weakening of monsoon winds. Above findings has major implications on the livelihood and economy of the region

Response of O2 and pH to ENSO in the California Current System in a high-resolution global climate model

NASA Astrophysics Data System (ADS)

Turi, Giuliana; Alexander, Michael; Lovenduski, Nicole S.; Capotondi, Antonietta; Scott, James; Stock, Charles; Dunne, John; John, Jasmin; Jacox, Michael

2018-02-01

Coastal upwelling systems, such as the California Current System (CalCS), naturally experience a wide range of O2 concentrations and pH values due to the seasonality of upwelling. Nonetheless, changes in the El Niño-Southern Oscillation (ENSO) have been shown to measurably affect the biogeochemical and physical properties of coastal upwelling regions. In this study, we use a novel, high-resolution global climate model (GFDL-ESM2.6) to investigate the influence of warm and cold ENSO events on variations in the O2 concentration and the pH of the CalCS coastal waters. An assessment of the CalCS response to six El Niño and seven La Niña events in ESM2.6 reveals significant variations in the response between events. However, these variations overlay a consistent physical and biogeochemical (O2 and pH) response in the composite mean. Focusing on the mean response, our results demonstrate that O2 and pH are affected rather differently in the euphotic zone above ˜ 100 m. The strongest O2 response reaches up to several hundreds of kilometers offshore, whereas the pH signal occurs only within a ˜ 100 km wide band along the coast. By splitting the changes in O2 and pH into individual physical and biogeochemical components that are affected by ENSO variability, we found that O2 variability in the surface ocean is primarily driven by changes in surface temperature that affect the O2 solubility. In contrast, surface pH changes are predominantly driven by changes in dissolved inorganic carbon (DIC), which in turn is affected by upwelling, explaining the confined nature of the pH signal close to the coast. Below ˜ 100 m, we find conditions with anomalously low O2 and pH, and by extension also anomalously low aragonite saturation, during La Niña. This result is consistent with findings from previous studies and highlights the stress that the CalCS ecosystem could periodically undergo in addition to impacts due to climate change.

Precession-paced thermocline water temperature changes in response to upwelling conditions off southern Sumatra over the past 300,000 years

NASA Astrophysics Data System (ADS)

Wang, Xingxing; Jian, Zhimin; Lückge, Andreas; Wang, Yue; Dang, Haowen; Mohtadi, Mahyar

2018-07-01

Modern variations of sea surface temperature (SST) and thermocline water temperature (TWT) off southern Sumatra are responding to local upwelling conditions which are controlled by the Australian-Indonesian winter monsoon. The relationships between SST, TWT and upwelling during the past glacial-interglacial cycles are less clearly understood. In this study, SST and TWT variabilities over the past 300 kyr are reconstructed by using foraminiferal Mg/Ca-paleothermometry in sediment core SO139-74 KL off southern Sumatra (6°32.6‧S, 103°50‧E; 1690 m water depth). Whereas SST shows a clear glacial-interglacial cycle, TWT displays a predominant cycle at the precession band. Generally, the TWT record varies with total organic carbon content, revealing that similar to today, TWT and upwelling intensity off southern Sumatra vary in concert during the past 300 kyr. The lack of glacial-interglacial variability in the TWT suggests a limited role of glacial boundary conditions, such as changing sea level and ice volume, on the upwelling intensity in this region. The vertical gradients of upper water δ18O and temperature at this site also reveal precessional cyclicity. Our model simulation of air-sea interaction further supports the low TWTs during periods of enhanced upwelling and precession minimum.

A coupled ice-ocean model of upwelling in the marginal ice zone

NASA Technical Reports Server (NTRS)

Roed, L. P.; Obrien, J. J.

1983-01-01

A dynamical coupled ice-ocean numerical model for the marginal ice zone (MIZ) is suggested and used to study upwelling dynamics in the MIZ. The nonlinear sea ice model has a variable ice concentration and includes internal ice stress. The model is forced by stresses on the air/ocean and air/ice surfaces. The main coupling between the ice and the ocean is in the form of an interfacial stress on the ice/ocean interface. The ocean model is a linear reduced gravity model. The wind stress exerted by the atmosphere on the ocean is proportional to the fraction of open water, while the interfacial stress ice/ocean is proportional to the concentration of ice. A new mechanism for ice edge upwelling is suggested based on a geostrophic equilibrium solution for the sea ice medium. The upwelling reported in previous models invoking a stationary ice cover is shown to be replaced by a weak downwelling due to the ice motion. Most of the upwelling dynamics can be understood by analysis of the divergence of the across ice edge upper ocean transport. On the basis of numerical model, an analytical model is suggested that reproduces most of the upwelling dynamics of the more complex numerical model.

Different Levels of Hypoxia Tolerance during Early Life History Stages of Key Fish Species from the Northern Benguela Upwelling Ecosystem Inferred from the Comparison of Eco-Physiological Traits

NASA Astrophysics Data System (ADS)

Geist, S. J.; Imam, R. M.; Kunzmann, A.; Ekau, W.

2016-02-01

Global change factors such as a pronounced Oxygen Minimum Zone and the shoaling of hypoxic waters are assumed to play a major role in controlling the recruitment of fish stocks in Upwelling Systems by affecting the planktonic early life history stages. Ecological and ecophysiological traits in the larval stages of five key fish species in the Northern Benguela Upwelling System (Sardine, Sardinops sagax; Anchovy, Engraulis encrasicolus; Cape horse mackerel, Trachurus capensis; Cape hake, Merluccius sp.; Pelagic goby, Sufflogobobius bibarbatus) were investigated during the GENUS (Geochemistry and Ecology of the Namibian Upwelling Ecosystem) research project . Analysis of vertical larval distributions in relation to the depth of hypoxic water layers showed gradual interspecific differences, suggesting lower hypoxia tolerance levels of the small pelagics Sardine and Anchovy. Cape horse mackerel juveniles and larvae exhibited very high tolerance levels to short-term hypoxia in respirometry stress experiments, close to the levels of the extremely hypoxia-tolerant Pelagic goby. In the latter two species, we also measured the highest activities of anaerobic enzymes (pyruvate kinase and lactate dehydrogenase) in early and late larval stages, compared to very low activities in Sardine larvae. A higher amount of anaerobic enzymatic activity is related to a higher capacity to break down metabolites that build up during phases of oxygen debt and thus help the larvae to quickly recover from hypoxia exposure. In consequence, a high hypoxia tolerance during their early life stages allows Cape horse mackerel and Pelagic goby to successfully reproduce in an environment characterized by frequent hypoxic events. The low hypoxia tolerance of Sardine larvae, eventually resulting in higher mortality rates, is likely to be an important factor to understand the poor reproductive success and continuing recruitment failures of this formerly dominant fish species of the NBUS during the last 40 years.

Variability of Phytoplankton Size Structure in Response to Changes in Coastal Upwelling Intensity in the Southwestern East Sea

NASA Astrophysics Data System (ADS)

Shin, Jung-Wook; Park, Jinku; Choi, Jang-Geun; Jo, Young-Heon; Kang, Jae Joong; Joo, HuiTae; Lee, Sang Heon

2017-12-01

The aim of this study was to examine the size structure of phytoplankton under varying coastal upwelling intensities and to determine the resulting primary productivity in the southwestern East Sea. Samples of phytoplankton assemblages were collected on five occasions from the Hupo Bank, off the east coast of Korea, during 2012-2013. Because two major surface currents have a large effect on water mass transport in this region, we first performed a Backward Particle Tracking Experiment (BPTE) to determine the coastal sea from which the collected samples originated according to advection time of BPTE particles, following which we used upwelling age (UA) to determine the intensity of coastal upwelling in the region of origin for each sample. Only samples that were affected by coastal upwelling in the region of origin were included in subsequent analyses. We found that as UA increased, there was a decreasing trend in the concentration of picophytoplankton, and increasing trends in the concentration of nanophytoplankton and microphytoplankton. We also examined the relationship between the size structure of phytoplankton and primary productivity in the Ulleung Basin (UB), which has experienced significant variation over the past decade. We found that primary productivity in UB was closely related to the strength of the southerly wind, which is the most important mechanism for coastal upwelling in the southwestern East Sea. Thus, the size structure of phytoplankton is determined by the intensity of coastal upwelling, which is regulated by the southerly wind, and makes an important contribution to primary productivity.

Geochemical and statistical evidence of recharge, mixing, and controls on spring discharge in an eogenetic karst aquifer

NASA Astrophysics Data System (ADS)

Moore, Paul J.; Martin, Jonathan B.; Screaton, Elizabeth J.

2009-10-01

SummaryInformation about sources of recharge, distributions of flow paths, and the extent of water-rock reactions in karst aquifers commonly result from monitoring spring chemistry and discharge. To investigate the relationship between spring characteristics and the complexities of karst aquifers, we couple variations in surface- and groundwater chemistry to physical conditions including river stage, precipitation, and evapotranspiration (ET) within a sink-rise system through a 6-km portion of the Upper Floridan aquifer (UFA) in north-central Florida. Principal component analysis (PCA) of time series major-element compositions suggests that at least three sources of water affect spring discharge, including allogenic recharge into a swallet, diffuse recharge through a thin vadose zone, and water upwelling from deep within the aquifer. The deep-water source exerts the strongest influence on water chemistry by providing a majority of Na +, Mg 2+, K +, Cl -, and SO42- to the system. Anomalously high temperature at one of several monitoring wells reflects vertical flow of about 1 m/year. Mass-balance calculations suggest diffuse recharge and deep-water upwelling can provide up to 50% of the spring discharge; however, their contributions depend on head gradients between the conduit and surrounding aquifer matrix, which are influenced by variations in precipitation, ET, and river stage. Our results indicate that upwelling from deep flow paths may provide significant contributions of water to spring discharge, and that monitoring only springs limits interpretations of karst systems by masking critical components of the aquifer, such as water sources and flow paths. These results also suggest the matrix in eogenetic aquifers is a major pathway for flow even in a system dominated by conduits.

Geochemistry and magnetic sediment distribution at the western boundary upwelling system of southwest Atlantic

NASA Astrophysics Data System (ADS)

Cruz, Anna P. S.; Barbosa, Catia F.; Ayres-Neto, Arthur; Munayco, Pablo; Scorzelli, Rosa B.; Amorim, Nívea Santos; Albuquerque, Ana L. S.; Seoane, José C. S.

2018-02-01

In order to investigate the chemical and magnetic characteristics of sediments of the western boundary upwelling system of Southwest Atlantic we analyzed magnetic susceptibility, grain size distribution, total organic carbon, heavy mineral abundance, Fe associated with Mössbauer spectra, and Fe and Mn of pore water to evaluate the deposition patterns of sediments. Four box-cores were collected along a cross-shelf transect. Brazil Current and coastal plume exert a primary control at the inner and outer shelf cores, which exhibited similar depositional patterns characterized by a high abundance of heavy minerals (mean 0.21% and 0.08%, respectively) and very fine sand, whereas middle shelf cores presented low abundances of heavy minerals (mean 0.03%) and medium silt. The inner shelf was dominated by sub-angular grains, while in middle and outer shelf cores well-rounded grains were found. The increasing Fe3+:Fe2+ ratio from the inner to the outer shelf reflects farther distance to the sediment source. The outer shelf presented well-rounded minerals, indicating abrasive processes as a result of transport by the Brazil Current from the source areas. In the middle shelf, cold-water intrusion of the South Atlantic Central Water contributes to the primary productivity, resulting in higher deposition of fine sediment and organic carbon accumulation. The high input of organic carbon and the decreased grain size are indicative of changes in the hydrodynamics and primary productivity fueled by the western boundary upwelling system, which promotes loss of magnetization due to the induction of diagenesis of iron oxide minerals.

Emergy analysis of coastal systems influenced by upwelling in northern Chile: Estimation of ecological-economic sustainability at multiple scales

EPA Science Inventory

Numerous studies carried out in a variety of environments have suggested that coastal marine systems generate a variety of goods and services for humanity. However, in recent decades there has been a marked degradation of these ecosystems, as well as over-exploitation of natural ...

Dynamics of plankton populations in upwelling areas. [by remote sensors

NASA Technical Reports Server (NTRS)

Szekielda, K.

1974-01-01

Recent investigations of the upwelling area along the NW Coast of Africa which include studies with satellites are discussed. The detection of patchiness in temperature and plankton distribution in the upwelling area is of special interest because they can be investigated from space synoptically with repeated coverage. The recent satellite missions provide recordings in the infrared region of the electromagnetic spectrum (EMR) as well as in the visible part. The information from those two parts of the EMR is useful for establishing the sea surface temperature and plankton distribution in upwelling areas. The temperature distribution as observed with infrared sensors and the patchiness in plankton patterns are discussed as observed with the most recent satellites, namely the Earth Resources Technology Satellite (ERTS) and NOAA-2.

Atoll-phosphate genesis: Role of lagoonal biomass and possible role of endo-upwelling processes in phosphate concentration

DOE Office of Scientific and Technical Information (OSTI.GOV)

Trichet, J.; Rougerie, F.

1990-06-01

Sedimentological and hydrogeological data in Niau, a closed atoll in French Polynesia where P-concentration has been measured, suggest the role played by lagoonal organic matter in P-accumulation and the possible role of endo-upwelling processes in P-input in the system. A 15 m deep core through the lagoonal deposits shows the succession of organic-rich strata in which the P-content can reach up to 1.3% P{sub 2}O{sub 5}. Such a pattern suggests that, whatever the source of P within the lagoon (lagoonal water, bird guano, or endo-upwelled solutions, see below), this element is likely to be incorporated in quantitatively important lagoonal biomassmore » whose decay releases phosphorus back to the sediment. An example of such biomass and organic matter is given by the large amounts of cyano-bacterial organic matter that are present in the lagoon of Niau. A source for island phosphate has recently been proposed to be relatively deep seawater, which would be endo-upwelled from depths of hundreds of meters ({approximately}500 m, where P content is approximately 1.5 mmol.m{sup {minus}3} PO{sub 4}-P) through the permeable reef-body up to its surface (i.e., to its lagoonal waters, where P content reaches 5 mmol.m{sup {minus}3} in Niau atoll). The energy necessary for the transport of such solutions would be geothermal (at the bottom of the water column, i.e., close to the volcanic substrate of the reef body) and solar at its top through evaporation.« less

Controls on the interannual variability of hypoxia in a subtropical embayment and its adjacent waters in the Guangdong coastal upwelling system, northern South China Sea

NASA Astrophysics Data System (ADS)

Zhang, Heng; Cheng, Weicong; Chen, Yuren; Yu, Liuqian; Gong, Wenping

2018-06-01

Coastal embayments located downwind of large rivers under an upwelling-favorable wind are prone to develop low-oxygen or hypoxic conditions in their bottom water. One such embayment is Mirs Bay, off the Guangdong coast, which is affected by upwelling and the Pearl River Estuary (PRE) plume during summer. The relative importance of physical and biochemical processes on the interannual variability of hypoxia in Mirs Bay and its adjacent waters was investigated using statistical analyses of monthly hydrographic and water quality monitoring data from 2001 to 2015. The results reveal that the southwesterly wind duration and the PRE river discharge together explain 49% of the interannual variability in the size of the hypoxic area, whereas inclusion of the nutrient concentrations inside Mirs Bay and phytoplankton on the shelf explains 75% of the interannual variability in the size of the hypoxic area. This finding suggests that the interannual variability of hypoxia in Mirs Bay is regulated by coupled physical and biochemical processes. Increase of the hypoxic area under a longer-lasting southwesterly wind is caused by increased stratification, extended bottom water residence time, and onshore transport of a low-oxygen water mass induced by stable upwelling. In contrast, a reduction in the size of the hypoxic area may be attributed to a decrease in the surface water residence time of the particulate organic matter outside Mirs Bay due to increased discharge from the PRE. The results also show that the effects of allochthonous particulate organic matter outside Mirs Bay on bottom hypoxia cannot be neglected.

The Effect of Alongcoast Advection on Pacific Northwest Shelf and Slope Water Properties in Relation to Upwelling Variability

NASA Astrophysics Data System (ADS)

Stone, Hally B.; Banas, Neil S.; MacCready, Parker

2018-01-01

The Northern California Current System experiences highly variable seasonal upwelling in addition to larger basin-scale variability, both of which can significantly affect its water chemistry. Salinity and temperature fields from a 7 year ROMS hindcast model of this region (43°N-50°N), along with extensive particle tracking, were used to study interannual variability in water properties over both the upper slope and the midshelf bottom. Variation in slope water properties was an order of magnitude smaller than on the shelf. Furthermore, the primary relationship between temperature and salinity anomalies in midshelf bottom water consisted of variation in density (cold/salty versus warm/fresh), nearly orthogonal to the anomalies along density levels (cold/fresh versus warm/salty) observed on the upper slope. These midshelf anomalies were well-explained (R2 = 0.6) by the combination of interannual variability in local and remote alongshore wind stress, and depth of the California Undercurrent (CUC) core. Lagrangian analysis of upper slope and midshelf bottom water shows that both are affected simultaneously by large-scale alongcoast advection of water through the northern and southern boundaries. The amplitude of anomalies in bottom oxygen and dissolved inorganic carbon (DIC) on the shelf associated with upwelling variability are larger than those associated with typical variation in alongcoast advection, and are comparable to observed anomalies in this region. However, a large northern intrusion event in 2004 illustrates that particular, large-scale alongcoast advection anomalies can be just as effective as upwelling variability in changing shelf water properties on the interannual scale.

The Effect of Alongcoast Advection on Pacific Northwest Shelf and Slope Water Properties in Relation to Upwelling Variability

PubMed Central

Banas, Neil S.; MacCready, Parker

2018-01-01

Abstract The Northern California Current System experiences highly variable seasonal upwelling in addition to larger basin‐scale variability, both of which can significantly affect its water chemistry. Salinity and temperature fields from a 7 year ROMS hindcast model of this region (43°N–50°N), along with extensive particle tracking, were used to study interannual variability in water properties over both the upper slope and the midshelf bottom. Variation in slope water properties was an order of magnitude smaller than on the shelf. Furthermore, the primary relationship between temperature and salinity anomalies in midshelf bottom water consisted of variation in density (cold/salty versus warm/fresh), nearly orthogonal to the anomalies along density levels (cold/fresh versus warm/salty) observed on the upper slope. These midshelf anomalies were well‐explained (R 2 = 0.6) by the combination of interannual variability in local and remote alongshore wind stress, and depth of the California Undercurrent (CUC) core. Lagrangian analysis of upper slope and midshelf bottom water shows that both are affected simultaneously by large‐scale alongcoast advection of water through the northern and southern boundaries. The amplitude of anomalies in bottom oxygen and dissolved inorganic carbon (DIC) on the shelf associated with upwelling variability are larger than those associated with typical variation in alongcoast advection, and are comparable to observed anomalies in this region. However, a large northern intrusion event in 2004 illustrates that particular, large‐scale alongcoast advection anomalies can be just as effective as upwelling variability in changing shelf water properties on the interannual scale. PMID:29938149

COCMP Surface Current Mapping Reveals Eddy and Upwelling Jet off Cape Mendocino

NASA Astrophysics Data System (ADS)

Crawford, G. B.; Halle, C.; Largier, J.; Stone, S.

2008-12-01

Ocean surface currents are now being measured continuously over a roughly 2000 km stretch of the western US continental shelf from south of Tijuana, Mexico to the Columbia River. A long-standing gap in this coverage was finally filled on August 12, 2008, with the installation of a long-range Seasonde radar system at Shelter Cove, California (as a part of California's COCMP project). During its first three weeks of operation, this radar has revealed a large (~170 km diameter), stable, anticyclonic eddy southwest of Cape Mendocino in this poorly studied region. Upwelling-favorable winds appear to create an upwelling jet along the eastern edge of the eddy, leading to maximum daily-averaged current speeds up to 80 cm/s, and MODIS-derived chlorophyll concentrations up to 30 mg/m3 in the jet (compared to ~1 mg/m3 in the eddy center). AVHRR data reveal SST differences between the jet and the eddy center of 1.5 to 2.5 °C during these 3 weeks. These complex circulation structures modify water pathways and may interrupt nutrient delivery to locations farther south. We discuss the spatial and temporal evolution of these features.

Do submesoscale frontal processes ventilate the oxygen minimum zone off Peru?

NASA Astrophysics Data System (ADS)

Thomsen, S.; Kanzow, T.; Colas, F.; Echevin, V.; Krahmann, G.; Engel, A.

2016-02-01

The Peruvian upwelling region shows pronounced near-surface submesoscale variability including filaments and sharp density fronts. Submesoscale frontal processes can drive large vertical velocities and enhance vertical tracer fluxes in the upper ocean. The associated high temporal and spatial variability poses a large challenge to observational approaches targeting these processes. In this study the role of submesoscale processes for the ventilation of the near-coastal oxygen minimum zone off Peru is investigated. We use satellite based sea surface temperature measurements and multiple high-resolution glider observations of temperature, salinity, oxygen and chlorophyll fluorescence carried out in January and February 2013 off Peru near 14°S during active upwelling. Additionally, high-resolution regional ocean circulation model outputs (ROMS) outputs are analysed. At the beginning of our observational survey a previously upwelled, productive and highly oxygenated water body is found in the mixed layer. Subsequently, a cold filament forms and the waters are moved offshore. After the decay of the filament and the relaxation of the upwelling front, the oxygen enriched surface water is found in the previously less oxygenated thermocline suggesting the occurrence of frontal subduction. A numerical model simulation is used to analyse the evolution of Lagrangian numerical floats in several upwelling filaments, whose vertical structure and hydrographic properties agree well with the observations. The floats trajectories support our interpretation that the subduction of previously upwelled water occurs in filaments off Peru. We find that 40 - 60 % of the floats seeded in the newly upwelled water is subducted within a time period of 5 days. This hightlights the importance of this process in ventilating the oxycline off Peru.

Upwelling-derived oceanographic conditions impact growth performance and growth-related gene expression in intertidal fish.

PubMed

Fuentes, Eduardo N; Zuloaga, Rodrigo; Almarza, Oscar; Mendez, Katterinne; Valdés, Juan Antonio; Molina, Alfredo; Pulgar, Jose

2017-12-01

Growth is one of the main biological processes in aquatic organisms that is affected by environmental fluctuations such as upwelling (characterized by food-rich waters). In fish, growth is directly related with skeletal muscle increase; which represents the largest tissue of body mass. However, the effects of upwelling on growth, at the physiological and molecular level, are unknown. This study used Girella laevifrons (one of the most abundant intertidal fish in Eastern South Pacific) as a biological model, considering animals from upwelling (U) and non-upwelling (NU) areas. Here, we evaluated the effect of nutritional composition and food availability on growth performance and expression of key growth-related genes (insulin-kike growth factor 1 (igf1) and myosin heavy-chain (myhc)) and atrophy-related genes (muscle ring-finger 1 (murf1), F-box only protein 32 (atrogin-1) and BCL2/adenovirus E1B 19kDa-interacting protein 3 (bnip3)). We reported that, among zones, U fish displayed higher growth performance in response to nutritional composition, specifically between protein- and fiber-rich diets (~1g). We also found in NU fish that atrophy-related genes were upregulated with fiber-rich diet and during fasting (~2-fold at minimum respect U). In conclusion, our results suggest that the growth potential of upwelling fish may be a consequence of differential muscle gene expression. Our data provide a preliminary approach contributing on how upwelling influence fish growth at the physiological and molecular levels. Future studies are required to gain further knowledge about molecular differences between U and NU animals, as well as the possible applications of this knowledge in the aquaculture industry. Copyright © 2017 Elsevier Inc. All rights reserved.

Gradients in microbial methanol uptake: productive coastal upwelling waters to oligotrophic gyres in the Atlantic Ocean

PubMed Central

Dixon, Joanna L; Sargeant, Stephanie; Nightingale, Philip D; Colin Murrell, J

2013-01-01

Methanol biogeochemistry and its importance as a carbon source in seawater is relatively unexplored. We report the first microbial methanol carbon assimilation rates (k) in productive coastal upwelling waters of up to 0.117±0.002 d−1 (∼10 nmol l−1 d−1). On average, coastal upwelling waters were 11 times greater than open ocean northern temperate (NT) waters, eight times greater than gyre waters and four times greater than equatorial upwelling (EU) waters; suggesting that all upwelling waters upon reaching the surface (⩽20 m), contain a microbial population that uses a relatively high amount of carbon (0.3–10 nmol l−1 d−1), derived from methanol, to support their growth. In open ocean Atlantic regions, microbial uptake of methanol into biomass was significantly lower, ranging between 0.04–0.68 nmol l−1 d−1. Microbes in the Mauritanian coastal upwelling used up to 57% of the total methanol for assimilation of the carbon into cells, compared with an average of 12% in the EU, and 1% in NT and gyre waters. Several methylotrophic bacterial species were identified from open ocean Atlantic waters using PCR amplification of mxaF encoding methanol dehydrogenase, the key enzyme in bacterial methanol oxidation. These included Methylophaga sp., Burkholderiales sp., Methylococcaceae sp., Ancylobacter aquaticus, Paracoccus denitrificans, Methylophilus methylotrophus, Methylobacterium oryzae, Hyphomicrobium sp. and Methylosulfonomonas methylovora. Statistically significant correlations for upwelling waters between methanol uptake into cells and both chlorophyll a concentrations and methanol oxidation rates suggest that remotely sensed chlorophyll a images, in these productive areas, could be used to derive total methanol biological loss rates, a useful tool for atmospheric and marine climatically active gas modellers, and air–sea exchange scientists. PMID:23178665

A high-resolution Late Quaternary upwelling record from the anoxic Cariaco Basin, Venezuela

NASA Astrophysics Data System (ADS)

Peterson, L. C.; Overpeck, J. T.; Kipp, N. G.; Imbrie, J.

1991-02-01

Results are presented of a high-resolution study of the planktonic foraminiferal faunas from two piston cores recovered from the Cariaco Basin in the southern Caribbean Sea. The Cariaco Basin is a small anoxic marine basin on the northern continental margin of Venezuela in an area today characterized by both seasonal trade wind-induced upwelling and pronounced dry and wet seasons. Our data indicate that large changes in the intensity of upwelling, and hence trade wind strength, occurred in this region during the last glacial-interglacial transition and throughout the Holocene. During the last glacial lowstand of sea level, the Cariaco Basin was effectively isolated from the open Caribbean along its northern margin by the then largely emergent Tortuga Bank. Oxic conditions existed in the deep Cariaco Basin at this time, and surface productivity was low. About 12,600 years ago, the abrupt initiation of strong upwelling over the basin and the onset of permanent anoxia in the deep waters are coincident with the rapid rise of sea level that accompanied the peak interval of meltwater discharge from the Laurentide Ice Sheet into the Gulf of Mexico. Strong upwelling between 12,600 and about 10,000 years ago may be related to intensified trade winds resulting, in part, from cooler sea surface temperatures in the Caribbean and Gulf of Mexico. After about 10,000 years ago, upwelling intensity was reduced, though highly variable. A preliminary frequency domain analysis of the Holocene portion of the Cariaco Basin time series suggests that solar forcing may explain a significant component of the century-scale variability observed in the record of upwelling and trade wind strength.

Emphasis on High Power Lithium Ion Technology for Pulse-Load Operations: Terrestrial Developments Potential Benefits to Space Application

NASA Astrophysics Data System (ADS)

Fusalba, Florence; Chami, Marianne; Rey, Marlene; Moreau, Gilles; Reynier, Yvan; Azais, Philippe

2014-08-01

Currently Li-ion batteries are preferred to supply space missions owing to their large energy density. However, these batteries are designed for standard missions without high-power pulsed payloads, therefore for low C-rates profiles, and do not answer the needs of high- power space applications. More enhanced power sources compatible with extended thermal environment are therefore needed for some space applications like next generation launchers or radar satellites. It is believed that synergy between terrestrial and space sectors could foster the avoidance of multiple financing for the development of similar technologies and systems, as well as dual-use of facilities, providing some real applications for synergy. CEA experienced terrestrial requirements for Hybrid Electric Vehicle applications, start & stop, e-buses and other larger vehicles. In this frame, materials especially designed for high power needs, new cells conception and recently hybrid supercapacitors developments at CEA are discussed as potential solutions for space high power feature.

Coastal upwelling by wind-driven forcing in Jervis Bay, New South Wales: A numerical study for 2011

NASA Astrophysics Data System (ADS)

Sun, Youn-Jong; Jalón-Rojas, Isabel; Wang, Xiao Hua; Jiang, Donghui

2018-06-01

The Princeton Ocean Model (POM) was used to investigate an upwelling event in Jervis Bay, New South Wales (SE Australia), with varying wind directions and strengths. The POM was adopted with a downscaling approach for the regional ocean model one-way nested to a global ocean model. The upwelling event was detected from the observed wind data and satellite sea surface temperature images. The validated model reproduced the upwelling event showing the input of bottom cold water driven by wind to the bay, its subsequent deflection to the south, and its outcropping to the surface along the west and south coasts. Nevertheless, the behavior of the bottom water that intruded into the bay varied with different wind directions and strengths. Upwelling-favorable wind directions for flushing efficiency within the bay were ranked in the following order: N (0°; northerly) > NNE (30°; northeasterly) > NW (315°; northwesterly) > NE (45°; northeasterly) > ENE (60°; northeasterly). Increasing wind strengths also enhance cold water penetration and water exchange. It was determined that wind-driven downwelling within the bay, which occurred with NNE, NE and ENE winds, played a key role in blocking the intrusion of the cold water upwelled through the bay entrance. A northerly wind stress higher than 0.3 N m-2 was required for the cold water to reach the northern innermost bay.

On the Hiatus in the Acceleration of Tropical Upwelling Since the Beginning of the 21st Century

NASA Technical Reports Server (NTRS)

Aschmann, J.; Burrows, J. P.; Gebhardt, C.; Rozanov, A.; Hommel, R.; Weber, M.; Thompson, A. M.

2014-01-01

Chemistry-climate models predict an acceleration of the upwelling branch of the Brewer-Dobson circulation as a consequence of increasing global surface temperatures, resulting from elevated levels of atmospheric greenhouse gases. The observed decrease of ozone in the tropical lower stratosphere during the last decades of the 20th century is consistent with the anticipated acceleration of upwelling. However, more recent satellite observations of ozone reveal that this decrease has unexpectedly stopped in the first decade of the 21st century, challenging the implicit assumption of a continuous acceleration of tropical upwelling. In this study we use three decades of chemistry transport-model simulations (1980-2013) to investigate this phenomenon and resolve this apparent contradiction. Our model reproduces the observed tropical lower stratosphere ozone record, showing a significant decrease in the early period followed by a statistically robust trend-change after 2002. We demonstrate that this trend-change is correlated with corresponding changes in the vertical transport and conclude that a hiatus in the acceleration of tropical upwelling occurred during the last decade.

Geographical gradients in selection can reveal genetic constraints for evolutionary responses to ocean acidification.

PubMed

Gaitán-Espitia, Juan Diego; Marshall, Dustin; Dupont, Sam; Bacigalupe, Leonardo D; Bodrossy, Levente; Hobday, Alistair J

2017-02-01

Geographical gradients in selection can shape different genetic architectures in natural populations, reflecting potential genetic constraints for adaptive evolution under climate change. Investigation of natural pH/pCO 2 variation in upwelling regions reveals different spatio-temporal patterns of natural selection, generating genetic and phenotypic clines in populations, and potentially leading to local adaptation, relevant to understanding effects of ocean acidification (OA). Strong directional selection, associated with intense and continuous upwellings, may have depleted genetic variation in populations within these upwelling regions, favouring increased tolerances to low pH but with an associated cost in other traits. In contrast, diversifying or weak directional selection in populations with seasonal upwellings or outside major upwelling regions may have resulted in higher genetic variances and the lack of genetic correlations among traits. Testing this hypothesis in geographical regions with similar environmental conditions to those predicted under climate change will build insights into how selection may act in the future and how populations may respond to stressors such as OA. © 2017 The Author(s).

Observations of a cycle of intense coastal upwelling and downwelling at the research site of the Shirshov Institute of Oceanology in the Black Sea

NASA Astrophysics Data System (ADS)

Zatsepin, A. G.; Silvestrova, K. P.; Kuklev, S. B.; Piotoukh, V. B.; Podymov, O. I.

2016-03-01

The paper presents the results of joint analysis of the response of vertical temperature and current velocity profile distributions in the coastal zone of the Gelendzhik region of the Black Sea to strong wind forcing in the third ten-day period of September 2013. This forcing was caused by the propagation of an atmospheric cyclone, which first initiated coastal upwelling that was later replaced by downwelling. We formulate a criterion for the development of full coastal upwelling and demonstrate its efficiency. We assume that frequent events of incomplete coastal upwelling and downwelling are associated with changes in the water dynamics (variations in the intensity and direction of the alongshore current) generally not related to local wind forcing.

Late Neogene foraminifera from the northern Namibian continental shelf and the transition to the Benguela Upwelling System

NASA Astrophysics Data System (ADS)

Bergh, Eugene W.; Compton, John S.; Frenzel, Peter

2018-05-01

Middle Miocene to Plio-Pleistocene foraminifera provide insights into the palaeoenvironment on the northern Namibian continental shelf located at the far northern end of the present-day Benguela Upwelling System (BUS). Biostratigraphy and Strontium Isotope Stratigraphy (SIS) of the recovered basal olive-green mud unit indicate an age of 16 to 14 Ma. A sharp, erosional contact separates the basal mud from the overlying Plio-Pleistocene gravelly pelletal phosphorite sands. Grain size data, P/B ratios and benthic diversity indices indicate a change between the middle Miocene and overlying Plio-Pleistocene palaeoenvironments linked to the timing and conditions associated with the initiation of the BUS. The different lithological units and microfossil assemblages in the olive-green mud unit and the overlying pelletal phosphorite units support the late Miocene initiation of the BUS and the northwards migration of the Angola-Benguela Front. Planktic foraminifera indicate a shift from warmer surface water conditions to cooler conditions during the initiation of the BUS. Benthic palaeobathymetric ranges and P/B ratios are consistent with outer shelf water depths suggesting a deeper palaeoenvironment during the Mid-Miocene Climatic Optimum (MMCO) than today. Benthic foraminifera in the middle Miocene are dominated by large (>1 mm) taxa and adapted to oligotrophic environments before the initiation of the BUS. The benthic assemblage composition indicates that bottom water conditions changed to eutrophic conditions during the Plio-Pleistocene under intensified upwelling conditions.

Evaluation and application of the ROMS 1-way embedding procedure to the central california upwelling system

NASA Astrophysics Data System (ADS)

Penven, Pierrick; Debreu, Laurent; Marchesiello, Patrick; McWilliams, James C.

What most clearly distinguishes near-shore and off-shore currents is their dominant spatial scale, O (1-30) km near-shore and O (30-1000) km off-shore. In practice, these phenomena are usually both measured and modeled with separate methods. In particular, it is infeasible for any regular computational grid to be large enough to simultaneously resolve well both types of currents. In order to obtain local solutions at high resolution while preserving the regional-scale circulation at an affordable computational cost, a 1-way grid embedding capability has been integrated into the Regional Oceanic Modeling System (ROMS). It takes advantage of the AGRIF (Adaptive Grid Refinement in Fortran) Fortran 90 package based on the use of pointers. After a first evaluation in a baroclinic vortex test case, the embedding procedure has been applied to a domain that covers the central upwelling region off California, around Monterey Bay, embedded in a domain that spans the continental U.S. Pacific Coast. Long-term simulations (10 years) have been conducted to obtain mean-seasonal statistical equilibria. The final solution shows few discontinuities at the parent-child domain boundary and a valid representation of the local upwelling structure, at a CPU cost only slightly greater than for the inner region alone. The solution is assessed by comparison with solutions for the whole US Pacific Coast at both low and high resolutions and to solutions for only the inner region at high resolution with mean-seasonal boundary conditions.

Intraseasonal patterns in coastal plankton biomass off central Chile derived from satellite observations and a biochemical model

NASA Astrophysics Data System (ADS)

Gomez, Fabian A.; Spitz, Yvette H.; Batchelder, Harold P.; Correa-Ramirez, Marco A.

2017-10-01

Subseasonal (5-130 days) environmental variability can strongly affect plankton dynamics, but is often overlooked in marine ecology studies. We documented the main subseasonal patterns of plankton biomass in the coastal upwelling system off central Chile, the southern part of the Humboldt System. Subseasonal variability was extracted from temporal patterns in satellite data of wind stress, sea surface temperature, and chlorophyll from the period 2003-2011, and from a realistically forced eddy-resolving physical-biochemical model from 2003 to 2008. Although most of the wind variability occurs at submonthly frequencies (< 30 days), we found that the dominant subseasonal pattern of phytoplankton biomass is within the intraseasonal band (30-90 days). The strongest intraseasonal coupling between wind and plankton is in spring-summer, when increased solar radiation enhances the phytoplankton response to upwelling. Biochemical model outputs show intraseasonal shifts in plankton community structure, mainly associated with the large fluctuations in diatom biomass. Diatom biomass peaks near surface during strong upwelling, whereas small phytoplankton biomass peaks at subsurface depths during relaxation or downwelling periods. Strong intraseasonally forced changes in biomass and species composition could strongly impact trophodynamics connections in the ecosystem, including the recruitment of commercially important fish species such as common sardine and anchovy. The wind-driven variability of chlorophyll concentration was connected to mid- and high-latitude atmospheric anomalies, which resemble disturbances with frequencies similar to the tropical Madden-Julian Oscillation.

Spectral measurements of ocean-dumped wastes tested in the marine upwelled spectral signature laboratory

NASA Technical Reports Server (NTRS)

Witte, W. G.; Usry, J. W.; Whitlock, C. H.; Gurganus, E. A.

1979-01-01

Transmission and inherent upwelled radiance measurements were made of various mixtures of three ocean-dumped industrial plant wastes in artificial seawater. Laboratory analyses were made of the physical and chemical properties of the various mixtures. These results and the laboratory measurements of beam attenuation and inherent upwelled radiance indicate a variety of chemical and spectral responses when industrial wastes are added to artificial seawater. In particular, increased levels of turbidity did not always cause increased levels of inherent reflectance.

Dynamics of plankton populations in upwelling areas

NASA Technical Reports Server (NTRS)

Szekielda, K. H. (Principal Investigator)

1975-01-01

The author has identified the following significant results. Spectral properties of the upwelled waters off the NW coast of Africa were studied with observations derived from aircraft and Skylab. Results indicate that the two-channel, ratio approach is ineffective in determining surface chlorophyll concentrations. Ocean color boundaries and temperature gradients were found to be directly correlated with each other and also with fishing effort in the upwelling region. Photographic and scanner data derived from Skylab were effective in locating ocean boundaries and mapping temperature distributions.

Treatment of isolated mediastinal and hilar recurrence of lung cancer with bronchoscopic endobronchial ultrasound guided intratumoral injection of chemotherapy with cisplatin.

PubMed

Mehta, Hiren J; Begnaud, Abbie; Penley, Andrea M; Wynne, John; Malhotra, Paras; Fernandez-Bussy, Sebastian; Cope, Jessica M; Shuster, Jonathan J; Jantz, Michael A

2015-12-01

A common pattern of recurrence in lung cancer after receiving full dose external beam radiation therapy (EBRT) to targeted sites is isolated mediastinal and hilar recurrence (IMHR). Treatment options for these patients are limited to palliative radiation, chemotherapy, and/or best supportive care. We describe our experience with treating IMHR with bronchoscopic endobronchial ultrasound (EBUS) guided intratumoral injection of cisplatin (ITC). Patients treated between Jan 2009-September 2014 with ITC for IMHR were included. Patient demographics, tumor histology, size, concurrent therapy, location, number of sites treated, treatment sessions, and encounters were abstracted. Responses were analyzed on follow-up scans 8-12 weeks after the last treatment session using RECIST 1.1 criteria. Locoregional recurrence, progression-free survival (PFS), and overall survival were measured. 50 sites were treated in 36 patients (19 males, 17 females) with mean age 61.9±8.5 years. Eight sites treated on subsequent encounters were excluded and one patient had an unevaluable response, leaving 35 patients and 41 sites for final analysis. 24/35 (69%) had complete or partial response (responders), whereas 11/35 (31%) had stable or progressive disease (non-responders). There were no significant differences in response based on histology, size, and concurrent therapy. Median survival for the group was 8 months (95% CI of 6-11 mo). Responders had significantly higher survival and PFS than non-responders. Two patients treated with concurrent EBRT, developed broncho-mediastinal fistula. EBUS guided intratumoral cisplatin for IMHR appears to be safe and effective, and may represent a new treatment paradigm for this patient population. Copyright © 2015 Elsevier Ireland Ltd. All rights reserved.

Pleural Dye Marking Using Radial Endobronchial Ultrasound and Virtual Bronchoscopy before Sublobar Pulmonary Resection for Small Peripheral Nodules.

PubMed

Lachkar, Samy; Baste, Jean-Marc; Thiberville, Luc; Peillon, Christophe; Rinieri, Philippe; Piton, Nicolas; Guisier, Florian; Salaun, Mathieu

2018-01-01

Minimally invasive surgery of pulmonary nodules allows suboptimal palpation of the lung compared to open thoracotomy. The objective of this study was to assess endoscopic pleural dye marking using radial endobronchial ultrasound (r-EBUS) and virtual bronchoscopy to localize small peripheral lung nodules immediately before minimally invasive resection. The endoscopic procedure was performed without fluoroscopy, under general anesthesia in the operating room immediately before minimally invasive surgery. Then, 1 mL of methylene blue (0.5%) was instilled into the guide sheath, wedged in the subpleural space. Wedge resection or segmentectomy were guided by visualization of the dye on the pleural surface. Contribution of dye marking to the surgical procedure was rated by the surgeon. Twenty-five nodules, including 6 ground glass opacities, were resected in 22 patients by video-assisted thoracoscopic wedge resection (n = 11) or robotic-assisted thoracoscopic surgery (10 segmentectomies and 1 wedge resection). The median greatest diameter of nodules was 8 mm. No conversion to open thoracotomy was needed. The endoscopic procedure added an average 10 min to surgical resection. The dye was visible on the pleural surface in 24 cases. Histological diagnosis and free margin resection were obtained in all cases. Median skin-to-skin operating time was 90 min for robotic segmentectomy and 40 min for video-assisted wedge resection. The same operative precision was considered impossible by the surgeon without dye marking in 21 cases. Dye marking using r-EBUS and virtual bronchoscopy can be easily and safely performed to localize small pulmonary nodules immediately before minimally invasive resection. © 2018 S. Karger AG, Basel.

Transbronchial drainage using endobronchial ultrasonography with guide sheath for lung abscess: A case report.

PubMed

Yaguchi, Daizo; Ichikawa, Motoshi; Inoue, Noriko; Kobayashi, Daisuke; Shizu, Masato; Imai, Naoyuki

2018-05-01

Lung abscess was previously treated surgically, but is now mainly treated with antibiotics and ideally with direct drainage, although postural drainage canalso be used. A chest abnormal shadow was detected in an 82-year-old man and he was referred to our department in November 2017. On chest computed tomography (CT), a low-density mass shadow was present in the left S8 segment. Lung abscess and lung cancer were considered as differential diagnoses, and treatment with sulbactam sodium/ampicillin sodium (SBT/ABPC) was first initiated for lung abscess. The etiologic agent could not be identified by sputum examination, and the abscess shadow remained. Lung abscess. Endobronchial ultrasonography with a guide sheath (EBUS-GS)-guided bronchoscopy was performed on hospital day 21 to diagnose the lesion, identify the etiologic agent if the lesion was a lung abscess, and attempt drainage. Vacuum aspiration performed in the guide sheath after the probe was placed within the lesion produced 4-5 ml of gray turbid pus, and the abscess was judged to have been drained. A subsequent pathological examination did not detect malignant cells. Klebsiella pneumoniae, Prevotella spp. was identified as the etiologic agent in bacteriological tests. Antibiotics were changed based on sensitivity test results, and drainage was similarly performed on hospital day 28. The shadow gradually improved and disappeared. Therefore, this procedure and treatment led to identification of the etiologic agent and helped with cure of the disease. Based on the basic principle of treatment for abscess using as much drainage as possible, EBUS-GS-guided transbronchial drainage may be considered to be a "new procedure" for lung abscess.

Transbronchial drainage using endobronchial ultrasonography with guide sheath for lung abscess

PubMed Central

Yaguchi, Daizo; Ichikawa, Motoshi; Inoue, Noriko; Kobayashi, Daisuke; Shizu, Masato; Imai, Naoyuki

2018-01-01

Abstract Rationale: Lung abscess was previously treated surgically, but is now mainly treated with antibiotics and ideally with direct drainage, although postural drainage canalso be used. Patient concerns: A chest abnormal shadow was detected in an 82-year-old man and he was referred to our department in November 2017. On chest computed tomography (CT), a low-density mass shadow was present in the left S8 segment. Lung abscess and lung cancer were considered as differential diagnoses, and treatment with sulbactam sodium/ampicillin sodium (SBT/ABPC) was first initiated for lung abscess. The etiologic agent could not be identified by sputum examination, and the abscess shadow remained. Diagnoses: Lung abscess. Interventions: Endobronchial ultrasonography with a guide sheath (EBUS-GS)-guided bronchoscopy was performed on hospital day 21 to diagnose the lesion, identify the etiologic agent if the lesion was a lung abscess, and attempt drainage. Vacuum aspiration performed in the guide sheath after the probe was placed within the lesion produced 4-5 ml of gray turbid pus, and the abscess was judged to have been drained. Outcomes: A subsequent pathological examination did not detect malignant cells. Klebsiella pneumoniae, Prevotella spp. was identified as the etiologic agent in bacteriological tests. Antibiotics were changed based on sensitivity test results, and drainage was similarly performed on hospital day 28. The shadow gradually improved and disappeared. Therefore, this procedure and treatment led to identification of the etiologic agent and helped with cure of the disease. Lessons: Based on the basic principle of treatment for abscess using as much drainage as possible, EBUS-GS-guided transbronchial drainage may be considered to be a “new procedure” for lung abscess. PMID:29768382

Pulmonary tularaemia: all that looks like cancer is not necessarily cancer - case report of four consecutive cases.

PubMed

Fachinger, Patrick; Tini, Gabrielo Mauro; Grobholz, Rainer; Gambazzi, Franco; Fankhauser, Hans; Irani, Sarosh

2015-03-26

Pulmonary tularaemia is a very rare disease with only a small number of cases described in the literature. So far, to our knowledge, there exists no case report of pulmonary tularaemia where PET-CT scans and follow up CT scans are available. We present four consecutive cases of pulmonary tularaemia. All patients suffered from non-specific symptoms. All patients were referred to our institution with strong suspicions of malignancy, particularly lung cancer. Diagnosis of tularaemia was made by typical findings in the aspirate of EBUS guided fine needle aspiration (necrosis, epithelioid cell aggregation) and surgical biopsy respectively, and a positive serology. In three of the four cases, the diagnosis was confirmed by positive PCR results of the tissue. PET-CT scans obtained in all four cases were indistinguishable from lesions typically seen in patients suffering from lung cancer. One of the four patients suffered from recurrence of the disease after antibiotic treatment; also this patient finally recovered after initiation of a second antibiotic regimen. One case became asymptomatic spontaneously, but this patient still received an antibiotic treatment. In one case, a follow up CT scan was unchanged compared to the initial PET-CT scan; in all other cases, the lesions disappeared almost completely. Symptoms of patients suffering from pulmonary tularaemia are non-specific and can be of prolonged character. PET-CT scans in these cases are indistinguishable from lung cancer. The diagnosis can be established when typical findings in EBUS guided fine needle aspirates or surgical biopsies are found in combination with a positive serology. In most cases the lesions disappear in follow up CT scans after clinically successful treatment.

Geodynamic constraints on deep-mantle buoyancy: Implications for thermochemical structure of LLSVP and large-scale upwellings under the Pacific Ocean.

NASA Astrophysics Data System (ADS)

Forte, A. M.; Glisovic, P.; Grand, S. P.; Lu, C.; Simmons, N. A.; Rowley, D. B.

2015-12-01

Convection-related data constrain lower-mantle density anomalies that contribute to mantle convective flow. These include global gravity and topography anomalies, plate motions and excess ellipticity of the core-mantle boundary (CMB). Each datum possesses differing wavelength and depth dependent resolution of heterogeneity and thus the strongest constraints on density anomalies are obtained by jointly inverting all data in combination. The joint-inversions employ viscous response functions (i.e. geodynamic kernels) for a flowing mantle. Non-uniqueness is greatly reduced by including seismic and mineral physics data into the joint inversions. We present the results of inversions where seismic and geodynamic data are singly and jointly inverted to map density anomalies. Employing mineral physical data we estimate thermal and compositional contributions to density anomalies. We evaluate the extent to which "Large Low Shear Velocity Provinces" (LLSVP) are anomalous and we determine their impact on the global pattern of convective flow. The inversions yield consistent maps of lower-mantle flow (see figure) that are dominated by two large upwellings, under the Western Pacific (next to the Caroline microplate) and Eastern Pacific (under the East Pacific Rise). These hot upwellings effectively delimit the margins of the Pacific LLSVP, suggesting intrinsic negative buoyancy within this structure impedes large-scale upwellings in the mantle above. These two upwellings do not resemble classical mantle "plumes" found in simple isoviscous and isochemical convection models but their contribution to mass and heat transport across the lower mantle is significant and thus behave similarly to plumes. The large scale of these upwellings may be understood in terms of the high viscosity in the lower mantle, inferred from geodynamic constraints on mantle rheology. Very-long time convection simulations initiated with present-day structure inferred from these inversions show the two Pacific upwellings possess remarkable geographic fixity and longevity extending over several hundred million years, again a consequence of the high viscosity in the lower mantle. These upwellings are fed by large heat flux across the CMB (from 12 to 20 TW) and should play a major role in the thermal evolution of the mantle.

Changes in optical characteristics of surface microlayers hint to photochemically and microbially-mediated DOM turnover in the upwelling region off Peru

NASA Astrophysics Data System (ADS)

Galgani, L.; Engel, A.

2015-12-01

The coastal upwelling system off Peru is characterized by high biological activity and a pronounced subsurface oxygen minimum zone, as well as associated emissions of atmospheric trace gases such as N2O, CH4 and CO2. During the Meteor (M91) cruise to the Peruvian upwelling system in 2012, we investigated the composition of the sea-surface microlayer (SML), the oceanic uppermost boundary directly subject to high solar radiation, often enriched in specific organic compounds of biological origin like Chromophoric Dissolved Organic Matter (CDOM) and marine gels. In the SML, the continuous photochemical and microbial recycling of organic matter may strongly influence gas exchange between marine systems and the atmosphere. In order to understand organic matter cycling in surface films, we analyzed SML and underlying water samples at 38 stations determining DOC concentration, amino acid composition, marine gels, CDOM and bacterial and phytoplankton abundance as indicators of photochemical and microbial alteration processes. CDOM composition was characterized by spectral slope (S) values and Excitation-Emission Matrix fluorescence (EEMs), which allow to track changes in molecular weight (MW) of DOM, and to determine potential DOM sources and sinks. We identified five fluorescent components of the CDOM pool, of which two had excitation/emission characteristics of protein-like fluorophores and were highly enriched in the SML. CDOM composition and changes in spectral slope properties suggested a local microbial release of HMW DOM directly in the SML as a response to light exposure in this extreme environment. Our results suggest that microbial and photochemical processes play an important role for the production, alteration and loss of optically active substances in the SML.

Metal Deposition Along the Peru Margin Since the Last Glacial Maximum: Evidence For Regime Change at \\sim 6ka

NASA Astrophysics Data System (ADS)

Tierney, J.; Cleaveland, L.; Herbert, T.; Altabet, M.

2004-12-01

The Peru Margin upwelling zone plays a key role in regulating marine biogeochemical cycles, particularly the fate of nitrate. High biological productivity and low oxygen waters fed into the oxygen minimum zone result in intense denitrification in the modern system, the consequences of which are global in nature. It has been very difficult, however, to study the paleoclimatic history of this region because of the poor preservation of carbonate in Peru Margin sediments. Here we present records of trace metal accumulation from two cores located in the heart of the suboxic zone off the central Peru coast. Chronology comes from multiple AMS 14C dates on the alkenone fraction of the sediment, as well as correlation using major features of the \\delta 15N record in each core. ODP Site 1228 provides a high resolution, continuous sediment record from the Recent to about 14ka, while gravity core W7706-41k extends the record to the Last Glacial Maximum. Both cores were sampled at a 100 yr resolution, then analyzed for % N, \\delta 15N, alkenones, and trace metal concentration. Analysis of redox-sensitive metals (Mo and V) alongside metals associated with changes in productivity (Ni and Zn) provides perspective on the evolution of the upwelling system and distinguishes the two major factors controlling the intensity of the oxygen minimum zone. The trace metal record exhibits a notable increase in the intensity and variability of low oxygen waters and productivity beginning around 6ka and extending to the present. Within this most recent 6ka interval, the data suggest fluctuations in oxygenation and productivity occur on 1000 yr timescales. Our core records, therefore, suggest that the Peru Margin upwelling system strengthened significantly during the mid to late Holocene.

Weakened stratospheric quasibiennial oscillation driven by increased tropical mean upwelling.

PubMed

Kawatani, Yoshio; Hamilton, Kevin

2013-05-23

The zonal wind in the tropical stratosphere switches between prevailing easterlies and westerlies with a period of about 28 months. In the lowermost stratosphere, the vertical structure of this quasibiennial oscillation (QBO) is linked to the mean upwelling, which itself is a key factor in determining stratospheric composition. Evidence for changes in the QBO have until now been equivocal, raising questions as to the extent of stratospheric circulation changes in a global warming context. Here we report an analysis of near-equatorial radiosonde observations for 1953-2012, and reveal a long-term trend of weakening amplitude in the zonal wind QBO in the tropical lower stratosphere. The trend is particularly notable at the 70-hectopascal pressure level (an altitude of about 19 kilometres), where the QBO amplitudes dropped by roughly one-third over the period. This trend is also apparent in the global warming simulations of the four models in the Coupled Model Intercomparison Project Phase 5 (CMIP5) that realistically simulate the QBO. The weakening is most reasonably explained as resulting from a trend of increased mean tropical upwelling in the lower stratosphere. Almost all comprehensive climate models have projected an intensifying tropical upwelling in global warming scenarios, but attempts to estimate changes in the upwelling by using observational data have yielded ambiguous, inconclusive or contradictory results. Our discovery of a weakening trend in the lower-stratosphere QBO amplitude provides strong support for the existence of a long-term trend of enhanced upwelling near the tropical tropopause.

Wind-driven upwelling effects on cephalopod paralarvae: Octopus vulgaris and Loliginidae off the Galician coast (NE Atlantic)

NASA Astrophysics Data System (ADS)

Otero, Jaime; Álvarez-Salgado, X. Antón; González, Ángel F.; Souto, Carlos; Gilcoto, Miguel; Guerra, Ángel

2016-02-01

Circulation patterns of coastal upwelling areas may have central consequences for the abundance and cross-shelf transport of the larval stages of many species. Previous studies have provided evidences that larvae distribution results from a combination of subtidal circulation, species-specific behaviour and larval sources. However, most of these works were conducted on organisms characterised by small-sized and abundant early life phases. Here, we studied the influence of the hydrography and circulation of the Ría de Vigo and adjacent shelf (NW Iberian upwelling system) on the paralarval abundance of two contrasting cephalopods, the benthic common octopus (Octopus vulgaris) and the pelagic squids (Loliginidae). We sampled repeatedly a cross-shore transect during the years 2003-2005 and used zero inflated models to accommodate the scarcity and patchy distribution of cephalopod paralarvae. The probability of catching early stages of both cephalopods was higher at night. Octopus paralarvae were more abundant in the surface layer at night whereas loliginids preferred the bottom layer regardless of the sampling time. Abundance of both cephalopods increased when shelf currents flowed polewards, water temperature was high and water column stability was low. The probability of observing an excess of zero catches decreased during the year for octopus and at high current speed for loliginids. In addition, the circulation pattern conditioned the body size distribution of both paralarvae; while the average size of the captured octopuses increased (decreased) with poleward currents at daylight (nighttime), squids were smaller with poleward currents regardless of the sampling time. These results contribute to the understanding of the effects that the hydrography and subtidal circulation of a coastal upwelling have on the fate of cephalopod early life stages.

Resource use of an aquacultured shellfish in the reverse estuary Bahía San Quintín, Baja California, México

NASA Astrophysics Data System (ADS)

Wilkinson, G. M.; Emery, K.; Camacho-Ibar, V.; Pace, M.; McGlathery, K.; Sandoval Gil, J.; Hernandez-Lopez, J.

2016-02-01

Shellfish aquaculture is prominent in many coastal and estuarine environments. Filter feeding by cultured shellfish connects the benthic and pelagic environments in coastal ecosystems. Bahía San Quintín is a reverse estuary in Baja California, Mexico, where Pacific oysters (Crassostrea gigas) are cultivated. While oysters likely feed heavily on phytoplankton especially during upwelling periods, we hypothesized that other forms of organic matter available in high quantities such as seagrass (Zostera marina) and macroalgae (Ulva spp.) must also be used by the oysters, especially in the most inshore portions of the bay. We measured the carbon and hydrogen stable isotope composition of oysters and their potential food resources at upper, mid, and lower bay sites during upwelling and non-upwelling seasons and applied a Bayesian mixing model to evaluate resource use. Hydrogen isotopes provided a large separation between potential food resources. Although we did not find any strong seasonal effects due to upwelling, there was a strong spatial gradient in resource use. Phytoplankton were most important at the lower (oceanic) site (median resource use for two sampling times, 68 and 79 %) and decreased up the estuary as macroalgae became more important (43 and 56 % at the upper site). At all sites for both sampling times, seagrass was an unimportant resource for oysters. The contrast between high phytoplankton use at the lower site and increased macroalgal use at the upper site is likely due to available resource biomass. Our results illustrate the adaptability of oysters to varying resource availability and the possibility of a higher system carrying capacity than that based on phytoplankton alone given multiple potential food sources.

Impacts of ENSO on air-sea oxygen exchange: Observations and mechanisms

NASA Astrophysics Data System (ADS)

Eddebbar, Yassir A.; Long, Matthew C.; Resplandy, Laure; Rödenbeck, Christian; Rodgers, Keith B.; Manizza, Manfredi; Keeling, Ralph F.

2017-05-01

Models and observations of atmospheric potential oxygen (APO ≃ O2 + 1.1 * CO2) are used to investigate the influence of El Niño-Southern Oscillation (ENSO) on air-sea O2 exchange. An atmospheric transport inversion of APO data from the Scripps flask network shows significant interannual variability in tropical APO fluxes that is positively correlated with the Niño3.4 index, indicating anomalous ocean outgassing of APO during El Niño. Hindcast simulations of the Community Earth System Model (CESM) and the Institut Pierre-Simon Laplace model show similar APO sensitivity to ENSO, differing from the Geophysical Fluid Dynamics Laboratory model, which shows an opposite APO response. In all models, O2 accounts for most APO flux variations. Detailed analysis in CESM shows that the O2 response is driven primarily by ENSO modulation of the source and rate of equatorial upwelling, which moderates the intensity of O2 uptake due to vertical transport of low-O2 waters. These upwelling changes dominate over counteracting effects of biological productivity and thermally driven O2 exchange. During El Niño, shallower and weaker upwelling leads to anomalous O2 outgassing, whereas deeper and intensified upwelling during La Niña drives enhanced O2 uptake. This response is strongly localized along the central and eastern equatorial Pacific, leading to an equatorial zonal dipole in atmospheric anomalies of APO. This dipole is further intensified by ENSO-related changes in winds, reconciling apparently conflicting APO observations in the tropical Pacific. These findings suggest a substantial and complex response of the oceanic O2 cycle to climate variability that is significantly (>50%) underestimated in magnitude by ocean models.

Seasonal variation of the South Indian tropical gyre

NASA Astrophysics Data System (ADS)

Aguiar-González, Borja; Ponsoni, Leandro; Ridderinkhof, Herman; van Aken, Hendrik M.; de Ruijter, Will P. M.; Maas, Leo R. M.

2016-04-01

Based on satellite altimeter data and global atlases of temperature, salinity, wind stress and wind-driven circulation we investigate the seasonal variation of the South Indian tropical gyre and its associated open-ocean upwelling system, known as the Seychelles-Chagos Thermocline Ridge (SCTR). Results show a year-round, altimeter-derived cyclonic gyre where the upwelling regime appears closely related to seasonality of the ocean gyre, a relationship that has not been previously explored in this region. An analysis of major forcing mechanisms suggests that the thermocline ridge results from the constructive interaction of basin-scale wind stress curl, local-scale wind stress forcing and remote forcing driven by Rossby waves of different periodicity: semiannual in the west, under the strong influence of monsoonal winds; and, annual in the east, where the southeasterlies prevail. One exception occurs during winter, when the well-known westward intensification of the upwelling core, the Seychelles Dome, is shown to be largely a response of the wind-driven circulation. At basin-scale, the most outstanding feature is the seasonal shrinkage of the ocean gyre and the SCTR. From late autumn to spring, the eastward South Equatorial Countercurrent (SECC) recirculates early in the east on feeding the westward South Equatorial Current, therefore closing the gyre before arrival to Sumatra. We find this recirculation longitude migrates over 20° and collocates with the westward advance of a zonal thermohaline front emerging from the encounter between (upwelled) Indian Equatorial Water and relatively warmer and fresher Indonesian Throughflow Water. We suggest this front, which we call the Indonesian Throughflow Front, plays an important role as remote forcing to the tropical gyre, generating southward geostrophic flows that contribute to the early recirculation of the SECC.

Changing surface water conditions for the last 500 ka in the Southeast Atlantic: Implications for variable influences of Agulhas leakage and Benguela upwelling

NASA Astrophysics Data System (ADS)

Petrick, Benjamin F.; McClymont, Erin L.; Marret, Fabienne; van der Meer, Marcel T. J.

2015-09-01

The Southeast Atlantic Ocean is an important component of global ocean circulation, as it includes heat and salt transfer into the Atlantic through the Agulhas leakage as well as the highly productive Benguela upwelling system. Here we reconstruct sea surface temperatures (SSTs) from Ocean Drilling Program (ODP) Site 1087 in the Southeast Atlantic to investigate surface ocean circulation patterns during the late Pleistocene (0-500 ka). The UK'37 index and dinoflagellate cyst assemblages are used to reconstruct SSTs, δDalkenone is used to reconstruct changes in sea surface salinity, and mass accumulation rates of alkenones and chlorine pigments are quantified to detect changing marine export productivity. The greatest amplitude of SST warming precedes decreases in benthic δ18O and therefore occurs early in the transition from glacials to interglacials. The δDalkenone, as a salinity indicator, increases before SSTs, suggesting that the pattern of Agulhas leakage is more complex than suggested by SST proxies. Marine isotope stage (MIS) 10 shows an anomalous pattern: it is marked by a pronounced increase in chlorine concentration, which may be related to enhanced/expanded Benguela upwelling reaching the core site. We find no evidence of an absence of Agulhas leakage throughout the record, suggesting that there is no Agulhas cutoff even during MIS 10. Finally, the ODP Site 1087 record shows an increasing strength of Agulhas leakage towards the present day, which may have impacted the intensity of the Atlantic meridional overturning circulation. As a result, the new analyses from ODP Site 1087 demonstrate a complex interaction between influences of the Benguela upwelling and the Agulhas leakage through the late Pleistocene, which are inferred here to reflect changing circulation patterns in the Southern Ocean and in the atmosphere.

Recent decadal trends in Iberian water vapour: GPS analysis and WRF process study

NASA Astrophysics Data System (ADS)

Miranda, Pedro M. A.; Nogueira, Miguel; Semedo, Alvaro; Benevides, Pedro; Catalao, Joao; Costa, Vera

2016-04-01

A 24-year simulation of the recent Iberian climate, using the WRF model at 9km resolution forced by ERA-Interim reanalysis (1989-2012), is analysed for the decadal evolution of the upwelling forcing coastal wind and for column integrated Precipitable water vapour (PWV). Results indicate that, unlike what was found by Bakun et al. (2009) for the Peruvian region, a statistically significant trend in the upwelling favourable (northerly) wind has been accompanied by a corresponding decrease in PWV, not only inland but also over the coastal waters. Such increase is consistent with a reinforced northerly coastal jet in the maritime boundary layer contributing to atmospheric Ekman pumping of dry continental air into the coastal region. Diagnostics of the prevalence of the Iberian thermal low following Hoinka and Castro (2003) also show a positive trend in its frequency during an extended summer period (April to September). These results are consistent with recent studies indicating an upward trend in the frequency of upwelling in SW Iberia (Alves and Miranda 2013), and may be relevant for climate change applications as an increase in coastal upwelling (Miranda et al 2013) may lead to substantial regional impacts in the subtropics. The same analysis with ERA-Interim reanalysis data, which was used to force the WRF simulations, does not reveal the same signal in PWV, and indeed correlates poorly with the GPS observations, indicating that the data assimilation process makes the water vapour data in reanalysis unusable for climate change purposes. The good correlation between the WRF simulated data and GPS observations allow for a detailed analysis of the processes involved in the evolution of the PWV field. Akcnowledgements: Study done within FCT Grant RECI/GEO-MET/0380/2012, financially supported by FCT Grant UID/ GEO/50019/2013-IDL Alves JMR, Miranda PMA (2013) Variability of Iberian upwelling implied by ERA-40 and ERA-Interim reanalyses, Tellus A 2013, http://dx.doi.org/10.3402/tellusa.v65i0.19245. Bakun et al (2010) Greenhouse gas, upwelling-favorable winds, and the future of coastal ocean upwelling ecosystems, Global Change Biology, doi: 10.1111/j.1365-2486.2009.02094.x Hoinka KP, Castro M (2003) The Iberian Peninsula thermal low. QJRMS, 129, 1491- 1511, doi: 10.1256/qj.01.189. Miranda et al (2013) Climate change and upwelling: response of Iberian upwelling to atmospheric forcing in a regional climate scenario. Climate Dynamics, doi: 10.1007/s00382-012-1442-9.

Internal structure of the upwelling events at Punta Gallinas (Colombian Caribbean) from modis-sst imagery

NASA Astrophysics Data System (ADS)

Alonso, J.; Blázquez, E.; Isaza-Toro, E.; Vidal, J.

2015-10-01

The upwelling at Punta Gallinas in the Guajira Peninsula (Colombian Caribbean) was studied from the point of view of the Mathematical Morphology using 10 years of monthly composite MODIS-SST imagery. Among all the morphological operators, the skeleton is widely used to compute the axis of the of the SST fields for the observed upwelling events. The skeleton is characterized by means of the Geometrical Theory of Measurement using the fractal dimension. The upwelling in the area is driven by the dynamic of the ITCZ (InterTropical Convergence Zone) and the relationship between the area and the East-West component of the trade winds has a lag of about 4 months. It has been found that the fractal dimension of the skeleton and the area of the upwelling are related. Some relationship was found between the fractal dimension of the skeleton (its complexity) and the Southern Oscillation Index by means of linear regression and cross-spectral analysis finding coherent energy at 1 year, 6 months and in the low frequency band. Finally, a sensitivity analysis between fractal dimension and threshold SST points out to take an extreme care at the time of fixing the last one.

Phytoplankton succession in an isolated upwelled Benguela water body in relation to different initial nutrient conditions

NASA Astrophysics Data System (ADS)

Wasmund, Norbert; Nausch, Günther; Hansen, Anja

2014-11-01

Freshly upwelled water is poor in phytoplankton biomass but rich in nutrients. With its ageing, phytoplankton biomass increases whereas the nutrients are consumed. The overall aim of our investigation was to check the succession in the phytoplankton composition as a consequence of changing nutrient conditions. The experiments were carried out in mesocosms filled with surface water in the northern Benguela region and installed on board of R/V "Maria S. Merian". In the freshly upwelled water, phytoplankton took up nitrogen at a higher rate than phosphorus if compared with the Redfield ratio. Therefore, nitrogen was exhausted already by day 6. Nitrogen limitation after day 6 was indicated by decreasing chlorophyll a (chla) concentrations, primary production rates and productivity indices and increasing C/N ratios in particulate matter. Despite nitrogen limitation, phosphorus addition stimulated further growth, mainly of diatoms, pointing to luxury uptake. Cyanobacteria did not develop and nitrogen fixation was zero even with phosphorus and iron addition. Diatoms stay the most important group in the freshly upwelled water, but autotrophic and heterotrophic dinoflagellates increase strongly in the matured upwelled water. Mesocosms excluded disturbances by advective water transports, which influence the study of succssions under field conditions.

A dynamic box model of bioactive elements in the southern Taiwan Strait

NASA Astrophysics Data System (ADS)

Hua-Sheng, Hong; Shao-Ling, Shang

1994-06-01

A dynamic box model was applied to study the characteristics of biogeochemical cycling of PO4-P, NO3-N, AOU, POC and PON in the southern Taiwan Strait region based on the field data of the “Minnan Taiwan Bank Fishing Ground Upwelling Ecosystem Study” during the period of Dec. 1987-Nov. 1988. According to the unique hydrological and topographical features of the region, six boxes and three layers were considered in the model. The variation rates and fluxes of elements induced by horizontal current, upwelling, by diffusion, sinking of particles and biogeochemical processes were estimated respectively. Results further confirmed that upwellings had important effects in this region. The nearshore upwelling areas had net input fluxes of nutrients brought by upwelling water, also had high depletion rates of nutrients and production rates of particulate organic matter and dissolved oxygen. The abnormal net production of nutrients in the middle layer, (10-30 m) indicated the important role of bacteria in this high production region. The phytoplankton POC contributed about 28% of the total POC. POC settling out from the euphotic zone was estimated to be 2×10-6 g/(m2·s) which was about 35% of the primary production.

A Simple Criterion to Estimate Performance of Pulse Jet Mixed Vessels

DOE Office of Scientific and Technical Information (OSTI.GOV)

Pease, Leonard F.; Bamberger, Judith A.; Mahoney, Lenna A.

Pulse jet mixed process vessels comprise a key element of the U.S. Department of Energy’s strategy to process millions of gallons of legacy nuclear waste slurries. Slurry suctioned into a pulse jet mixer (PJM) tube at the end of one pulse is pneumatically driven from the PJM toward the bottom of the vessel at the beginning of the next pulse, forming a jet. The jet front traverses the distance from nozzle outlet to the bottom of the vessel and spreads out radially. Varying numbers of PJMs are typically arranged in a ring configuration within the vessel at a selected radiusmore » and operated concurrently. Centrally directed radial flows from neighboring jets collide to create a central upwell that elevates the solids in the center of the vessel when the PJM tubes expel their contents. An essential goal of PJM operation is to elevate solids to the liquid surface to minimize stratification. Solids stratification may adversely affect throughput of the waste processing plant. Unacceptably high slurry densities at the base of the vessel may plug the pipeline through which the slurry exits the vessel. Additionally, chemical reactions required for processing may not achieve complete conversion. To avoid these conditions, a means of predicting the elevation to which the solids rise in the central upwell that can be used during vessel design remains essential. In this paper we present a simple criterion to evaluate the extent of solids elevation achieved by a turbulent upwell jet. The criterion asserts that at any location in the central upwell the local velocity must be in excess of a cutoff velocity to remain turbulent. We find that local velocities in excess of 0.6 m/s are necessary for turbulent jet flow through both Newtonian and yield stress slurries. By coupling this criterion with the free jet velocity equation relating the local velocity to elevation in the central upwell, we estimate the elevation at which turbulence fails, and consequently the elevation at which the upwell fails to further lift the slurry. Comparing this elevation to the vessel fill level predicts whether the jet flow will achieve the full vertical extent of the vessel at the center. This simple local-velocity criterion determines a minimum PJM nozzle velocity at which the full vertical extent of the central upwell in PJM vessels will be turbulent. The criterion determines a minimum because flow in regions peripheral to the central upwelling jet may not be turbulent, even when the center of the vessel in the upwell is turbulent, if the jet pulse duration is too short. The local-velocity criterion ensures only that there is sufficient wherewithal for the turbulent jet flow to drive solids to the surface in the center of the vessel in the central upwell.« less

Instrumentation for optical ocean remote sensing

NASA Technical Reports Server (NTRS)

Esaias, W. E.

1991-01-01

Instruments used in ocean color remote sensing algorithm development, validation, and data acquisition which have the potential for further commercial development and marketing are discussed. The Ocean Data Acquisition System (ODAS) is an aircraft-borne radiometer system suitable for light aircraft, which has applications for rapid measurement of chlorophyll pigment concentrations along the flight line. The instrument package includes a three channel radiometer system for upwelling radiance, an infrared temperature sensor, a three-channel downwelling irradiance sensor, and Loran-C navigation. Data are stored on a PC and processed to transects or interpolated 'images' on the ground. The instrument has been in operational use for two and one half years. The accuracy of pigment concentrations from the instrument is quite good, even in complex Chesapeake Bay waters. To help meet the requirement for validation of future satellite missions, a prototype air-deployable drifting buoy for measurement of near-surface upwelled radiance in multiple channnels is undergoing test deployment. The optical drifter burst samples radiance, stores and processes the data, and uses the Argos system as a data link. Studies are underway to explore the limits to useful lifetime with respect to power and fouling.

Quantifying the impact of an upwelling filament on the physical-chemical-biological interactions off SW Iberia

NASA Astrophysics Data System (ADS)

Cravo, A.; Sanchez, R.; Monteiro, C.; Cardeira, S.; Madureira, M.; Rita, F.; Relvas, P.

2017-12-01

Upwelling filaments are mesoscale structures of cold water that stretch seaward in a tongue-like shape with origin in the coastal upwelling zone. Filaments off the Iberian Peninsula are recurrent, showing similarities with those in the Californian coast. The Cape São Vicente, the SW tip of the Iberian Peninsula, is the root of recurrent filaments observed in the satellite imagery during the upwelling season. However, the understanding of its physical and chemical impact on the biological productivity is rather limited. There, a relatively small filament ( 80 km long) was investigated through remote sensing and in situ multidisciplinary observations during an upwelling favourable wind relaxation event, but just after an intense upwelling period. A total of 42 CTD+Rosette casts up to 400 m depth were distributed on an almost regular grid of 15 km mean spacing guided by guided by satellite SST imagery transmitted to the ship in near-real time. The parameters sampled during the sea campaign included: velocity field sampled along the ship track through a hull-mounted 38 kHz RDI ADCP, meteorological variables, temperature, salinity, chlorophyll a, dissolved oxygen, nitrate, phosphate, silicate, cadmium, lead and zinc. The extent of the impact of the filament was evaluated by quantifying the cross-shelf transports of several properties. The amounts conveyed by the filament were much stronger than those expected by the wind-driven Ekman mechanism, showing that it represents an efficient feature for the exchange of water, dissolved and particulate matter from the productive shelf towards the oligotrophic offshore region. Considering the periods of strong upwelling events and the extent of their duration along the year, the amounts of exported matter will certainly enhance the biological productivity of these waters, including its fisheries. These filament data contribute to better understand the physical-chemical-biological interactions of this regional ecosystem.

The role of Southern Ocean mixing and upwelling in glacial-interglacial atmospheric CO2 change

NASA Astrophysics Data System (ADS)

Watson, Andrew J.; Naveira Garabato, Alberto C.

2006-02-01

Decreased ventilation of the Southern Ocean in glacial time is implicated in most explanations of lower glacial atmospheric CO2. Today, the deep (>2000 m) ocean south of the Polar Front is rapidly ventilated from below, with the interaction of deep currents with topography driving high mixing rates well up into the water column. We show from a buoyancy budget that mixing rates are high in all the deep waters of the Southern Ocean. Between the surface and ~2000 m depth, water is upwelled by a residual meridional overturning that is directly linked to buoyancy fluxes through the ocean surface. Combined with the rapid deep mixing, this upwelling serves to return deep water to the surface on a short time scale. We propose two new mechanisms by which, in glacial time, the deep Southern Ocean may have been more isolated from the surface. Firstly, the deep ocean appears to have been more stratified because of denser bottom water resulting from intense sea ice formation near Antarctica. The greater stratification would have slowed the deep mixing. Secondly, subzero atmospheric temperatures may have meant that the present-day buoyancy flux from the atmosphere to the ocean surface was reduced or reversed. This in turn would have reduced or eliminated the upwelling (contrary to a common assumption, upwelling is not solely a function of the wind stress but is coupled to the air-sea buoyancy flux too). The observed very close link between Antarctic temperatures and atmospheric CO2 could then be explained as a natural consequence of the connection between the air-sea buoyancy flux and upwelling in the Southern Ocean, if slower ventilation of the Southern Ocean led to lower atmospheric CO2. Here we use a box model, similar to those of previous authors, to show that weaker mixing and reduced upwelling in the Southern Ocean can explain the low glacial atmospheric CO2 in such a formulation.

How well-connected is the surface of the global ocean?

PubMed

Froyland, Gary; Stuart, Robyn M; van Sebille, Erik

2014-09-01

The Ekman dynamics of the ocean surface circulation is known to contain attracting regions such as the great oceanic gyres and the associated garbage patches. Less well-known are the extents of the basins of attractions of these regions and how strongly attracting they are. Understanding the shape and extent of the basins of attraction sheds light on the question of the strength of connectivity of different regions of the ocean, which helps in understanding the flow of buoyant material like plastic litter. Using short flow time trajectory data from a global ocean model, we create a Markov chain model of the surface ocean dynamics. The surface ocean is not a conservative dynamical system as water in the ocean follows three-dimensional pathways, with upwelling and downwelling in certain regions. Using our Markov chain model, we easily compute net surface upwelling and downwelling, and verify that it matches observed patterns of upwelling and downwelling in the real ocean. We analyze the Markov chain to determine multiple attracting regions. Finally, using an eigenvector approach, we (i) identify the five major ocean garbage patches, (ii) partition the ocean into basins of attraction for each of the garbage patches, and (iii) partition the ocean into regions that demonstrate transient dynamics modulo the attracting garbage patches.

Parga Chasma: Coronae and Rifting on Venus

NASA Technical Reports Server (NTRS)

Smrekar, S. E.; Stofan, E. R.; Buck, W. R.; Martin, P.

2005-01-01

The majority of coronae (quasicircular volcano-tectonic features) are found along rifts or fracture belts, and the majority of rifts have coronae [e.g. 1,2]. However, the relationship between coronae and rifts remains unclear [3-6]. There is evidence that coronae can form before, after, or synchronously with rifts [3,4]. The extensional fractures in the rift zones have been proposed to be a result of broad scale upwelling and traction on the lower lithosphere [7]. However, not all rift systems have a significant positive geoid anomaly, as would be expected for an upwelling site [8]. This could be explained if the rifts lacking anomalies are no longer active. Coronae are generally accepted to be sites of local upwelling [e.g. 1], but the observed rifting is frequently not radial to the coronae and extends well beyond the coronae into the surrounding plains. Thus the question remains as to whether the rifts represent regional extension, perhaps driven by mantle tractions, or if the coronae themselves create local thinning and extension of the lithosphere. In the first case, a regional extension model should be consistent with the observed characteristics of the rifts. In the latter case, a model of lithospheric loading and fracturing would be more appropriate. A good analogy may be the propagation of oceanic intraplate volcanoes [9].

Evaluation of upwelling infrared radiance from earth's atmosphere

NASA Technical Reports Server (NTRS)

Gupta, S. K.; Tiwari, S. N.

1975-01-01

Basic equations for calculating the upwelling atmospheric radiation are presented which account for various sources of radiation coming out at the top of the atmosphere. The theoretical formulation of the transmittance models (line-by-line and quasi-random band model) and the computational procedures used for the evaluation of the transmittance and radiance are discussed in detail. By employing the Lorentz line-by-line and quasi-random computer programs, model calculations were made to determine the upwelling radiance and signal change in the wave number interval of CO fundamental band. These results are useful in determining the effects of different interfering molecules, water vapor profiles, ground temperatures, and ground emittances on the upwelling radiance and signal change. This information is of vital importance in establishing the feasibility of measuring the concentrations of pollutants in the atmosphere from a gas filter correlation instrument flown on an aircraft or mounted on a satellite.

Lagrangian Timescales of Southern Ocean Upwelling in a Hierarchy of Model Resolutions

NASA Astrophysics Data System (ADS)

Drake, Henri F.; Morrison, Adele K.; Griffies, Stephen M.; Sarmiento, Jorge L.; Weijer, Wilbert; Gray, Alison R.

2018-01-01

In this paper we study upwelling pathways and timescales of Circumpolar Deep Water (CDW) in a hierarchy of models using a Lagrangian particle tracking method. Lagrangian timescales of CDW upwelling decrease from 87 years to 31 years to 17 years as the ocean resolution is refined from 1° to 0.25° to 0.1°. We attribute some of the differences in timescale to the strength of the eddy fields, as demonstrated by temporally degrading high-resolution model velocity fields. Consistent with the timescale dependence, we find that an average Lagrangian particle completes 3.2 circumpolar loops in the 1° model in comparison to 0.9 loops in the 0.1° model. These differences suggest that advective timescales and thus interbasin merging of upwelling CDW may be overestimated by coarse-resolution models, potentially affecting the skill of centennial scale climate change projections.

Yearly variation of bacterial production in the Arraial do Cabo protection area (Cabo Frio upwelling region): An evidence of anthropogenic pressure

PubMed Central

Coelho-Souza, Sérgio A.; Pereira, Gilberto C.; Coutinho, Ricardo; Guimarães, Jean R.D.

2013-01-01

Arraial do Cabo is where upwelling occurs more intensively on the Brazilian coast. Although it is a protection area it suffers anthropogenic pressure such as harbor activities and sporadic sewage emissions. Short-time studies showed a high variability of bacterial production (BP) in this region but none of them evaluated BP during long periods in a large spatial scale including stations under different natural (upwelling and cold fronts) and anthropogenic pressures. During 2006, we sampled surface waters 10 times (5 in upwelling and 5 in subsidence periods) in 8 stations and we measured BP, temperature as well as the concentrations of inorganic nutrients, pigments and particulate organic matter (POM). BP was up to 400 times higher when sewage emissions were observed visually and it had a positive correlation with ammonia concentrations. Therefore, in 2007, we did two samples (each during upwelling and subsidence periods) during sewage emissions in five stations under different anthropogenic pressure and we also measured particles abundance by flow cytometry. The 12 samples in the most impacted area confirmed that BP was highest when ammonia was higher than 2 μM, also reporting the highest concentrations of chlorophyll a and suspended particles. However, considering all measured variables, upwelling was the main disturbing factor but the pressure of fronts should not be neglected since it had consequences in the auto-heterotrophic coupling, increasing the concentrations of non fluorescent particles and POM. Stations clustered in function of natural and anthropogenic pressures degrees and both determined the temporal-spatial variability. PMID:24688533

Yearly variation of bacterial production in the Arraial do Cabo protection area (Cabo Frio upwelling region): an evidence of anthropogenic pressure.

PubMed

Coelho-Souza, Sérgio A; Pereira, Gilberto C; Coutinho, Ricardo; Guimarães, Jean R D

2013-12-01

Arraial do Cabo is where upwelling occurs more intensively on the Brazilian coast. Although it is a protection area it suffers anthropogenic pressure such as harbor activities and sporadic sewage emissions. Short-time studies showed a high variability of bacterial production (BP) in this region but none of them evaluated BP during long periods in a large spatial scale including stations under different natural (upwelling and cold fronts) and anthropogenic pressures. During 2006, we sampled surface waters 10 times (5 in upwelling and 5 in subsidence periods) in 8 stations and we measured BP, temperature as well as the concentrations of inorganic nutrients, pigments and particulate organic matter (POM). BP was up to 400 times higher when sewage emissions were observed visually and it had a positive correlation with ammonia concentrations. Therefore, in 2007, we did two samples (each during upwelling and subsidence periods) during sewage emissions in five stations under different anthropogenic pressure and we also measured particles abundance by flow cytometry. The 12 samples in the most impacted area confirmed that BP was highest when ammonia was higher than 2 μM, also reporting the highest concentrations of chlorophyll a and suspended particles. However, considering all measured variables, upwelling was the main disturbing factor but the pressure of fronts should not be neglected since it had consequences in the auto-heterotrophic coupling, increasing the concentrations of non fluorescent particles and POM. Stations clustered in function of natural and anthropogenic pressures degrees and both determined the temporal-spatial variability.

Bleaching susceptibility and recovery of Colombian Caribbean corals in response to water current exposure and seasonal upwelling.

PubMed

Bayraktarov, Elisa; Pizarro, Valeria; Eidens, Corvin; Wilke, Thomas; Wild, Christian

2013-01-01

Coral bleaching events are globally occurring more frequently and with higher intensity, mainly caused by increases in seawater temperature. In Tayrona National Natural Park (TNNP) in the Colombian Caribbean, local coral communities are subjected to seasonal wind-triggered upwelling events coinciding with stronger water currents depending on location. This natural phenomenon offers the unique opportunity to study potential water current-induced mitigation mechanisms of coral bleaching in an upwelling influenced region. Therefore, coral bleaching susceptibility and recovery patterns were compared during a moderate and a mild bleaching event in December 2010 and 2011, and at the end of the subsequent upwelling periods at a water current-exposed and -sheltered site of an exemplary bay using permanent transect and labeling tools. This was accompanied by parallel monitoring of key environmental variables. Findings revealed that in 2010 overall coral bleaching before upwelling was significantly higher at the sheltered (34%) compared to the exposed site (8%). Whereas 97% of all previously bleached corals at the water current-exposed site had recovered from bleaching by April 2011, only 77% recovered at the sheltered site, but 12% had died there. In December 2011, only mild bleaching (<10% at both sites) was observed, but corals recovered significantly at both sites in the course of upwelling. No differences in water temperatures between sites occurred, but water current exposure and turbidity were significantly higher at the exposed site, suggesting that these variables may be responsible for the observed site-specific mitigation of coral bleaching. This indicates the existence of local resilience patterns against coral bleaching in Caribbean reefs.

Transport of terrigenous polycyclic aromatic hydrocarbons affected by the coastal upwelling in the northwestern coast of South China Sea.

PubMed

Ya, Miaolei; Wu, Yuling; Li, Yongyu; Wang, Xinhong

2017-10-01

Coastal upwelling prevails in the coast of Hainan Island, the northern South China Sea (SCS) during summer. We studied the influences of the upwelling on the horizontal and vertical transport of terrigenous polycyclic aromatic hydrocarbons (PAHs). PAHs in dissolved and suspended particulate phase of water samples were determined in the upper (depth < 1 m) and water column (depth > 10 m). PAH levels decreased sharply from inshore to offshore to open sea. The results showed that terrestrial input was the main source of coastal PAHs. Perylene, an important indicator of land plant-derived PAH, showed the significant correlation with PAHs (p < 0.005). This implied that fluvial transport was the primary pathway of terrigenous PAHs into the coast of northern SCS. Variations of the concentrations, compositions and diagnostic ratios of PAHs, accompanied the partition equilibrium in the water column, could indicate the selective degradation of PAHs by the plankton affected by upwelling. Different from the "traditional" transport pathway of PAHs in the water column (surface enrichment-depth depletion distribution), the upwelling could provide the original driver to elevate the upward diffusion of sediment entrained contaminants towards the intermediate even the upper waters. It could also enhance the outward diffusion of terrigenous PAHs accompanied by the offshore transport of the upper waters. Therefore, the transport pathway of PAHs can be summarized by the coastal upwelling rising PAHs with their subsequent transport offshore and settling in the adjacent open sea. Copyright © 2017 Elsevier Ltd. All rights reserved.

Bleaching Susceptibility and Recovery of Colombian Caribbean Corals in Response to Water Current Exposure and Seasonal Upwelling

PubMed Central

Bayraktarov, Elisa; Pizarro, Valeria; Eidens, Corvin; Wilke, Thomas; Wild, Christian

2013-01-01

Coral bleaching events are globally occurring more frequently and with higher intensity, mainly caused by increases in seawater temperature. In Tayrona National Natural Park (TNNP) in the Colombian Caribbean, local coral communities are subjected to seasonal wind-triggered upwelling events coinciding with stronger water currents depending on location. This natural phenomenon offers the unique opportunity to study potential water current-induced mitigation mechanisms of coral bleaching in an upwelling influenced region. Therefore, coral bleaching susceptibility and recovery patterns were compared during a moderate and a mild bleaching event in December 2010 and 2011, and at the end of the subsequent upwelling periods at a water current-exposed and -sheltered site of an exemplary bay using permanent transect and labeling tools. This was accompanied by parallel monitoring of key environmental variables. Findings revealed that in 2010 overall coral bleaching before upwelling was significantly higher at the sheltered (34%) compared to the exposed site (8%). Whereas 97% of all previously bleached corals at the water current-exposed site had recovered from bleaching by April 2011, only 77% recovered at the sheltered site, but 12% had died there. In December 2011, only mild bleaching (<10% at both sites) was observed, but corals recovered significantly at both sites in the course of upwelling. No differences in water temperatures between sites occurred, but water current exposure and turbidity were significantly higher at the exposed site, suggesting that these variables may be responsible for the observed site-specific mitigation of coral bleaching. This indicates the existence of local resilience patterns against coral bleaching in Caribbean reefs. PMID:24282551

Environmental Controls of Shellfish-Toxigenic Vibrio Bacteria in Oregon's Coasts and Estuaries

NASA Astrophysics Data System (ADS)

Gradoville, M. R.; Häse, C.; White, A. E.

2016-02-01

Vibrio species are a known and persistent concern for economically important aquaculture efforts. In Pacific Northwest shellfish hatcheries, vibriosis, caused by toxigenic Vibrio, has been responsible for major mortality events in recent decades — events that are often irregular and unpredictable. The success of shellfish hatcheries is critically linked to the chemical and biological composition of their seawater resources; thus, it is pertinent to understand the biogeochemical drivers of toxigenic Vibrio in their planktonic state. Recent evidence suggests that vibriosis outbreaks in Netarts Bay, Oregon may be related to wind-driven coastal upwelling, either through the advection of toxigenic Vibrio residing in upwelling source water, or through the creation of favorable growth conditions within the estuary. Here, we present data tracking shellfish-toxigenic Vibrio bacteria in Oregon estuaries and coastal waters through the 2015 upwelling season. Estuarine samples were collected from Netarts Bay and Yaquina Bay in May-October 2015 over a range of upwelling intensities, tidal heights, and biogeochemical conditions. Additionally, samples were collected at multiple depths from offshore coastal Oregon stations in order to test the hypothesis that toxigenic Vibrio reside in upwelling source waters. PCR-based methods were used to quantify the known shellfish pathogen V. coralliilyticus in estuary and seawater samples. These toxigenic Vibrio abundances were correlated to local environmental conditions, including temperature, salinity, carbonate chemistry, nutrients, and chlorophyll a concentrations, as well as coastal wind stress and upwelling intensity. Our analysis aims to define the environmental controls of toxigenic Vibrio in their free-living oceanic state, information that can be used to prevent future disease outbreaks in local shellfish hatcheries.

Oceanographic upwelling conditions influence signaling pathways involved in muscle growth of intertidal fish.

PubMed

Zuloaga, Rodrigo; Almarza, Oscar; Valdés, Juan A; Molina, Alfredo; Pulgar, José

2018-04-01

Few studies have addressed the impact of the upwelling oceanographical conditions on biological processes, such as growth, using a molecular and physiological approach. Upwelling conditions are characterized by low temperature seawater and high nutrient availability, which represents an ideal opportunity to understand how habitat modulates animal performance at different levels of biological complexity. We aimed to assess intraspecific variations in weight, oxygen consumption, protein content, and key signaling pathways involved in muscle-growth (protein kinase B (AKT) and extracellular signal-regulated kinase (ERK)) under experimental trials considering high/low seawater temperatures with full/restricted food rations. For this purpose, we studied Girella laevifrons, one of the most abundant fish species inhabiting rocky intertidal zones along the Eastern South Pacific coasts. Using fish obtained from upwelling (U) and non-upwelling (NU) zones, we reported that U animals displayed higher growth performance during both contrasting trials, with a weight gain (~3 g), lower oxygen consumption (~12%), and higher protein contents (~20%). Only ERK showed significant differences during the trials (~2-fold downregulation between NU and U fish). We also found that U fish increased protein ubiquitination in high water temperature and restricted food ration in contrast to NU fish. Our results help to elucidate how upwelling conditions may influence fish growth at physiological and molecular levels. Still, future analyses are necessary to improve the information regarding the impact of U and NU condition on animals, as well as the possible applications of this data in the aquaculture industry. Copyright © 2018 Elsevier Inc. All rights reserved.

The Origin and Mantle Dynamics of Quaternary Intraplate Volcanism in Northeast China From Joint Inversion of Surface Wave and Body Wave

NASA Astrophysics Data System (ADS)

Guo, Zhen; Wang, Kai; Yang, Yingjie; Tang, Youcai; John Chen, Y.; Hung, Shu-Huei

2018-03-01

We present a 3-D model of NE China by joint inversion of body and surface waves. The joint inversion significantly improves the resolution at shallow depths compared with body wave tomography alone and provides seismic evidence for the origin of Quaternary volcanism in NE China. Our model reveals that the mantle upwelling beneath the Changbaishan volcano originates from the transition zone and extends up to 60 km, and spreads at the base of the lithosphere with the upwelling head 5 times wider than the raising tail in the lower upper mantle. However, low velocities beneath the Halaha and Abaga volcanoes in the Xingmeng belt are confined to depths shallower than 150 km, suggesting that magmatism in the Xingmeng belt is more likely caused by localized asthenospheric upwelling at shallow depths rather than from the common deep source. A small-scale sublithospheric mantle convection may control the spatial and temporal distribution of Quaternary magmatism in NE China; that is, the upwelling beneath the Changbaishan volcano triggers the downwelling beneath the southern Songliao basin, where the high velocity imaged extends to 300 km. The downwelling may further induce localized upwelling in the surrounding areas, such as the Halaha and Abaga volcanoes. Thanks to the joint constraints from both surface and body waves, we can estimate the dimension of the convection cell. The convection cell is located between 42°N and 45°N, spreads around 500 km in the W-E direction measured from the distance between centers of downwelling and upwelling, and extends to 300 km vertically.

Mindanao Dome variability over the last 160 kyr: Episodic glacial cooling of the West Pacific Warm Pool

NASA Astrophysics Data System (ADS)

Bolliet, Timothé; Holbourn, Ann; Kuhnt, Wolfgang; Laj, Carlo; Kissel, Catherine; Beaufort, Luc; Kienast, Markus; Andersen, Nils; Garbe-Schönberg, Dieter

2011-02-01

We present sea surface, upper thermocline, and benthic δ18O data, as well as temperature and paleoproductivity proxy data, from the International Marine Global Change Study Program (IMAGES) Core MD06-3067 (6°31‧N, 126°30‧E, 1575 m water depth), located in the western equatorial Pacific Ocean within the flow path of the Mindanao Current. Our records reveal considerable glacial-interglacial and suborbital variability in the Mindanao Dome upwelling over the last 160 kyr. Dome activity generally intensified during glacial intervals resulting in cooler thermocline waters, whereas it substantially declined during interglacials, in particular in the early Holocene and early marine oxygen isotope stage (MIS) 5e, when upwelling waters did not reach the thermocline. During MIS 3 and MIS 2, enhanced surface productivity together with remarkably low SST and low upper ocean thermal contrast provide evidence for episodic glacial upwelling to the surface, whereas transient surface warming marks periodic collapses of the Mindanao Dome upwelling during Heinrich events. We attribute the high variability during MIS 3 and MIS 2 to changes in the El Niño Southern Oscillation state that affected boreal winter monsoonal winds and upper ocean circulation. Glacial upwelling intensified when a strong cyclonic gyre became established, whereas El Niño-like conditions during Heinrich events tended to suppress the cyclonic circulation, reducing Ekman transport. Thus, our findings demonstrate that variations in the Mindanao Dome upwelling are closely linked to the position and intensity of the tropical convection and also reflect far-field influences from the high latitudes.

Chromophoric and fluorescent dissolved organic matter in and above the oxygen minimum zone off Peru

NASA Astrophysics Data System (ADS)

Loginova, A. N.; Thomsen, S.; Engel, A.

2016-11-01

As a result of nutrient upwelling, the Peruvian coastal system is one of the most productive regions in the ocean. Sluggish ventilation of intermediate waters, characteristic for the Eastern Tropical South Pacific (ETSP) and microbial degradation of a high organic matter load promotes deoxygenation at depth. Dissolved organic matter (DOM) plays a key role in microbial respiration and carbon cycling, but little is known on DOM distribution and cycling in the ETSP. DOM optical properties give important insights on DOM sources, structure and biogeochemical reactivity. Here, we present data and a conceptual view on distribution and cycling of chromophoric (CDOM) and fluorescent (FDOM) DOM in and above the oxygen minimum zone (OMZ) off Peru. Five fluorescent components were identified during PARAFAC analysis. Highest intensities of CDOM and of the amino acid-like fluorescent component (C3) occurred above the OMZ and coincided with maximum chl a concentrations, suggesting phytoplankton productivity as major source. High intensities of a marine humic-like fluorescent component (C1), observed in subsurface waters, indicated in situ microbial reworking of DOM. FDOM release from inner shelf sediment was determined by seawater analysis and continuous glider sensor measurement and included a humic-like component (C2) with a signature typical for terrestrially derived humic acids. Upwelling supplied humic-like substances to the euphotic zone. Photo-reactions were likely involved in the production of a humic-like fluorescent component (C5). Our data show that variable biological and physical processes need to be considered for understanding DOM cycling in a highly dynamic coastal upwelling system like the ETSP off Peru.

Seasonal and Vegetational Variation in Albedo Measured During CERES Ground-Validation Pilot Study

NASA Technical Reports Server (NTRS)

Schuster, G. L.; Whitlock, C. H.; Plant, J. V.; Wheeler, R. J.; Moats, C. D.; Larman, K. T.; Ayers, J. K.; Feldl, E. K.

1997-01-01

The Clouds and the Earth's Radiant Energy System (CERES) satellite is scheduled for launch in the Fall of 1997 aboard the Tropical Rainfall Measuring Mission (TRMM). A surface measurement pilot study has been initiated in a 37-km region near Richmond, VA, for comparison with the CERES surface flux retrievals. Two-minute averaged upwelling and downwelling surface fluxes over a mostly deciduous forest have been recorded daily for the past two years, and show a broadband, shortwave daily albedo increase during the summer months. Evidence is presented that indicates vegetational changes in the forest as the overriding mechanism for this change. Upwelling flux measured over the entire region by helicopter-mounted instrumentation has been processed for four solar seasons. Future plans include the installation of four more albedo surface sites over various types of vegetation throughout the region.

Influence of El Niño and Indian Ocean Dipole on sea level variability in the Bay of Bengal

NASA Astrophysics Data System (ADS)

Sreenivas, P.; Gnanaseelan, C.; Prasad, K. V. S. R.

2012-01-01

Zonally oscillating seasonal equatorial winds generate pairs of upwelling and downwelling Kelvin waves in the Equatorial Indian Ocean, which then advance in to the coastal Bay of Bengal. The first (second) equatorial upwelling Kelvin wave has its origin in the western (eastern) basin, whereas the downwelling Kelvin waves originate in the central basin. The observed interannual variability of these Kelvin waves is highly governed by the associated zonal wind changes in the central and eastern equatorial Indian Ocean during the anomalous years. The second downwelling (upwelling) Kelvin wave is absent (weak) during El Niño (La Niña) years, whereas the second upwelling Kelvin wave strengthened during El Niño years both in the equatorial Indian Ocean and Bay of Bengal. The large scale off equatorial Rossby waves occasionally feedback the equatorial Kelvin waves, which then strengthen the Bay of Bengal coastal Kelvin waves. The coastal Kelvin waves and the associated radiated Rossby waves from east play a dominant role in the mesoscale eddy generation in Bay of Bengal. The analysis of cyclogenesis characteristics in the bay over the past 65 years revealed that the active (suppressed) phases of cyclogenesis are coinciding with the downwelling (upwelling) planetary waves which influence the cyclone heat potential by altering the thermocline depth.

The Influence of Hydrologic Conditions on the Distribution of Baleen Whales in the Antarctic (Raspredelenie Usatykh Kitov v Anarktike v Zabisimosti ot Gidrologicheskikh Uslovii),

DTIC Science & Technology

where a semistationary cyclonic system coincides with plankton rich waters upwelling from great depths. Whales locate these feeding grounds through...growth. They also travel parallel to isohalines to remain in the feeding grounds. (Author)

SIMULATING TEMPORAL VARIATIONS IN NUTRIENT, PHYTOPLANKTON, AND ZOOPLANKTON ON THE INNER OREGON SHELF

EPA Science Inventory

The objective of this study is to use a numerical model to examine the linkages between physical processes and temporal variability in the plankton dynamics in a coastal upwelling system. We used a nutrient-phytoplankton-zooplankton model coupled to a two-dimensional circulation...

Eddy-resolving simulation of plankton ecosystem dynamics in the California Current System

NASA Astrophysics Data System (ADS)

Gruber, Nicolas; Frenzel, Hartmut; Doney, Scott C.; Marchesiello, Patrick; McWilliams, James C.; Moisan, John R.; Oram, John J.; Plattner, Gian-Kasper; Stolzenbach, Keith D.

2006-09-01

We study the dynamics of the planktonic ecosystem in the coastal upwelling zone within the California Current System using a three-dimensional (3-D), eddy-resolving circulation model coupled to an ecosystem/biogeochemistry model. The physical model is based on the Regional Oceanic Modeling System (ROMS), configured at a resolution of 15 km for a domain covering the entire US West Coast, with an embedded child grid covering the central California upwelling region at a resolution of 5 km. The model is forced with monthly mean boundary conditions at the open lateral boundaries as well as at the surface. The ecological/biogeochemical model is nitrogen based, includes single classes for phytoplankton and zooplankton, and considers two detrital pools with different sinking speeds. The model also explicitly simulates a variable chlorophyll-to-carbon ratio. Comparisons of model results with either remote sensing observations (AVHRR, SeaWiFS) or in-situ measurements from the CalCOFI program indicate that our model is capable of replicating many of the large-scale, time-averaged features of the coastal upwelling system. An exception is the underestimation of the chlorophyll levels in the northern part of the domain, perhaps because of the lack of short-term variations in the atmospheric forcing. Another shortcoming is that the modeled thermocline is too diffuse, and that the upward slope of the isolines toward the coast is too small. Detailed time-series comparisons with observations from Monterey Bay reveal similar agreements and discrepancies. We attribute the good agreement between the modeled and observed ecological properties in large part to the accuracy of the physical fields. In turn, many of the discrepancies can be traced back to our use of monthly mean forcing. Analysis of the ecosystem structure and dynamics reveal that the magnitude and pattern of phytoplankton biomass in the nearshore region are determined largely by the balance of growth and zooplankton grazing, while in the offshore region, growth is balanced by mortality. The latter appears to be inconsistent with in situ observations and is a result of our consideration of only one zooplankton size class (mesozooplankton), neglecting the importance of microzooplankton grazing in the offshore region. A comparison of the allocation of nitrogen into the different pools of the ecosystem in the 3-D results with those obtained from a box model configuration of the same ecosystem model reveals that only a few components of the ecosystem reach a local steady-state, i.e. where biological sources and sinks balance each other. The balances for the majority of the components are achieved by local biological source and sink terms balancing the net physical divergence, confirming the importance of the 3-D nature of circulation and mixing in a coastal upwelling system.

Impact of Indian ocean dipole on the coastal upwelling features off the southwest coast of India

NASA Astrophysics Data System (ADS)

Nigam, Tanuja; Pant, Vimlesh; Prakash, Kumar Ravi

2018-05-01

A three-dimensional regional ocean model is used to examine the impact of positive Indian ocean dipole (pIOD) events on the coastal upwelling features at the southwest coast of India (SWCI). Two model experiments are carried out with different surface boundary conditions that prevailed in the normal and pIOD years from 1982 to 2010. Model experiments demonstrate the weakening of coastal upwelling at the SWCI in the pIOD years. The reduced southward meridional wind stress off the SWCI leads to comparatively lower offshore Ekman transport during August-October in the pIOD years to that in normal years. The suppressed coastal upwelling results in warmer sea surface temperature and deeper thermocline in the pIOD years during June-September. The offshore spatial extent of upwelled colder (< 22 °C) water was up to 75.5° E in August-September in normal years that was limited up to 76.2° E in pIOD years. The heat budget analysis reveals the decreased contribution of vertical entrainment process to the mixed layer cooling in pIOD years which is almost half of that of normal years in October. The net heat flux term shows warming tendency during May-November with a higher magnitude (+ 0.4 °C day-1) in normal years than pIOD years (+ 0.28 °C day-1). The biological productivity is found to reduce during the pIOD years as the concentration of phytoplankton and zooplankton decreases over the region of coastal upwelling at SWCI. Nitrate concentration in the pIOD years dropped by half during August-September and dropped by an order of magnitude in October as compared to its ambient concentration of 13 μmol L-1 in normal years.

Impact of Indian ocean dipole on the coastal upwelling features off the southwest coast of India

NASA Astrophysics Data System (ADS)

Nigam, Tanuja; Pant, Vimlesh; Prakash, Kumar Ravi

2018-06-01

A three-dimensional regional ocean model is used to examine the impact of positive Indian ocean dipole (pIOD) events on the coastal upwelling features at the southwest coast of India (SWCI). Two model experiments are carried out with different surface boundary conditions that prevailed in the normal and pIOD years from 1982 to 2010. Model experiments demonstrate the weakening of coastal upwelling at the SWCI in the pIOD years. The reduced southward meridional wind stress off the SWCI leads to comparatively lower offshore Ekman transport during August-October in the pIOD years to that in normal years. The suppressed coastal upwelling results in warmer sea surface temperature and deeper thermocline in the pIOD years during June-September. The offshore spatial extent of upwelled colder (< 22 °C) water was up to 75.5° E in August-September in normal years that was limited up to 76.2° E in pIOD years. The heat budget analysis reveals the decreased contribution of vertical entrainment process to the mixed layer cooling in pIOD years which is almost half of that of normal years in October. The net heat flux term shows warming tendency during May-November with a higher magnitude (+ 0.4 °C day-1) in normal years than pIOD years (+ 0.28 °C day-1). The biological productivity is found to reduce during the pIOD years as the concentration of phytoplankton and zooplankton decreases over the region of coastal upwelling at SWCI. Nitrate concentration in the pIOD years dropped by half during August-September and dropped by an order of magnitude in October as compared to its ambient concentration of 13 μmol L-1 in normal years.

Upwelling-Induced Primary Productivity in Coastal Waters of the Black Sea: Impact on Algorithms for Remote Sensing

NASA Technical Reports Server (NTRS)

Goldman, Joel C.; Brink, Kenneth K.; Gawarkiewicz, Glen; Sosik, Heidi M.

1997-01-01

This research program was a collaborative effort to investigate the impact of rapid changes in the water column during coastal upwelling, on biological and optical properties. These properties are important for constructing region or event-specific algorithms for remote sensing of pigment concentration and primary productivity and for comparing these algorithms with those used for the development of large scale maps from ocean color. We successfully achieved the primary objective of this research project which was to study in situ the dynamics of rapid spatial and temporal changes in properties of the water column during, coastal upwelling off the Crimean Coast in the Black Sea. The work was a collaborative effort between a group of biological and physical oceanographers from the Woods Hole Oceanographic Institution and from two oceanographic research institutions in the Crimea, Ukraine, located near the study site, the Marine Hydrophysical Institute (MHI) and the Institute of Biology of the Southern Seas (IBSS). The site was an ideal experimental model, both from a technical and economic standpoint, because of the predictable summer upwelling that occurs in the region and because of the availability of both a ship on call and laboratory and remote sensing facilities at the nearby marine institutes. We used a combination of shipboard measurements and remote sensing to investigate the physical evolution of rapid upwelling events and their impact on photoplankton and water column optical properties. The field work involved a two day cruise for mooring, deployment and a three day baseline survey cruise, followed by an eleven day primary cruise during, a summer upwelling event (anticipated by monitoring local winds and tracked by remote sensing imaging). An MHI ship was outfitted and used for these purposes.

Linking benthic community structure to terrestrial runoff and upwelling in the coral reefs of northeastern Hainan Island

NASA Astrophysics Data System (ADS)

Li, Xiubao; Wang, Daoru; Huang, Hui; Zhang, Jing; Lian, Jiansheng; Yuan, Xiangcheng; Yang, Jianhui; Zhang, Guoseng

2015-04-01

Near-shore coral reefs in northeastern Hainan Island are close to river mouths and aquaculture ponds, and also located at the center of the Qiongdong Upwelling (QDU). However, it is still unclear how terrestrial runoff and upwelling influence the community composition and spatial distribution of the benthos. During three cruises in 2010 and 2011 in Wenchang, northeastern Hainan Island, we determined a subset of environmental parameters in seawater (e.g. temperature, salinity, DO, dissolved inorganic nutrient (DIN), turbidity and transparency) and macroalgal δ15N and investigated the benthic communities (e.g. live coral cover, coral species richness, juvenile coral density, macroalgal cover and coverage of calcified algae) by video transect and visual census techniques at 10 stations (i.e. 1S-6D). The results showed that the QDU has influenced the reef waters in Wenchang. In 2011, the upwelling started in early May, peaked in July and disappeared in September and most upwelling events lasted for 1-2 weeks between May and July. The results also demonstrated that the reef water was nutrient enriched. Stations close to the river mouth and aquaculture ponds had higher levels of DIN and a higher percentage of ammonia in DIN, and there was consistently lower live coral cover, juvenile coral density and higher macroalgal cover. At some stations in this study, live coral cover was negatively correlated with macroalgal cover (i.e. 2S-6D). Live coral cover, species richness, and juvenile coral density all increased with the distance away from the river outlet and decreased with the rise of DIN. These results suggest that terrestrial runoff and upwelling stimulate nutrient enrichment, and that overgrowing macroalgae has an important influence on the coral communities in northeastern Hainan Island.

Wind modulation of upwelling at the shelf-break front off Patagonia: Observational evidence

NASA Astrophysics Data System (ADS)

Carranza, M. M.; Gille, S. T.; Piola, A. R.; Charo, M.; Romero, S. I.

2017-03-01

The South-Atlantic Patagonian shelf is the largest chlorophyll-a (Chl-a) hot spot in Southern Ocean color images. While a persistent 1500 km long band of high Chl-a along the shelf-break front (SBF) is indicative of upwelling, the mechanisms that drive it are not entirely known. Along-front wind oscillations can enhance upwelling and provide a nutrient pumping mechanism at shelf-break fronts of western boundary currents. Here we assess wind-induced upwelling at the SBF off Patagonia from daily satellite Chl-a and winds, historical hydrographic observations, cross-shelf Chl-a fluorescence transects from two cruises, and in situ winds and water column structure from a mooring site. Satellite Chl-a composites segregated by along-front wind direction indicate that surface Chl-a is enhanced at the SBF with southerly winds and suppressed with northerly winds. Northerly winds also result in enhanced Chl-a further offshore (˜25-50 km). Synoptic transects as well as mean hydrographic sections segregated by along-front winds show isopycnals tilted upward for southerly winds. Spring observations from the mooring also suggest that southerly winds destratify the water column and northerly winds restratify, in agreement with Ekman transport interacting with the front. Moreover, changes in water column temperature lag along-front wind forcing by 2-4 days. Our results suggest that oscillations in along-front winds, on timescales typical of atmospheric storms (2-10 days), can significantly modulate the upwelling and Chl-a concentrations at the SBF off Patagonia, revealing the importance of wind-induced upwelling for shelf-slope exchange at shelf-break fronts of western boundary currents.

Influence of basin-scale and mesoscale physical processes on biological productivity in the Bay of Bengal during the summer monsoon

NASA Astrophysics Data System (ADS)

Muraleedharan, K. R.; Jasmine, P.; Achuthankutty, C. T.; Revichandran, C.; Dinesh Kumar, P. K.; Anand, P.; Rejomon, G.

2007-03-01

Physical forcing plays a major role in determining biological processes in the ocean across the full spectrum of spatial and temporal scales. Variability of biological production in the Bay of Bengal (BoB) based on basin-scale and mesoscale physical processes is presented using hydrographic data collected during the peak summer monsoon in July-August, 2003. Three different and spatially varying physical processes were identified in the upper 300 m: (I) anticyclonic warm gyre offshore in the southern Bay; (II) a cyclonic eddy in the northern Bay; and (III) an upwelling region adjacent to the southern coast. In the warm gyre (>28.8 °C), the low salinity (33.5) surface waters contained low concentrations of nutrients. These warm surface waters extended below the euphotic zone, which resulted in an oligotrophic environment with low surface chlorophyll a (0.12 mg m -3), low surface primary production (2.55 mg C m -3 day -1) and low zooplankton biovolume (0.14 ml m -3). In the cyclonic eddy, the elevated isopycnals raised the nutricline upto the surface (NO 3-N > 8.2 μM, PO 4-P > 0.8 μM, SiO 4-Si > 3.5 μM). Despite the system being highly eutrophic, response in the biological activity was low. In the upwelling zone, although the nutrient concentrations were lower compared to the cyclonic eddy, the surface phytoplankton biomass and production were high (Chl a - 0.25 mg m -3, PP - 9.23 mg C m -3 day -1), and mesozooplankton biovolume (1.12 ml m -3) was rich. Normally in oligotrophic, open ocean ecosystems, primary production is based on ‘regenerated’ nutrients, but during episodic events like eddies the ‘production’ switches over to ‘new production’. The switching over from ‘regenerated production’ to ‘new production’ in the open ocean (cyclonic eddy) and establishment of a new phytoplankton community will take longer than in the coastal system (upwelling). Despite the functioning of a cyclonic eddy and upwelling being divergent (transporting of nutrients from deeper waters to surface), the utilization of nutrients leading to enhanced biological production and its transfer to upper trophic levels in the upwelling region imply that the energy transfer from primary production to secondary production (mesozooplankton) is more efficient than in the cyclonic eddy of the open ocean. The results suggest that basin-scale and mesoscale processes influence the abundance and spatial heterogeneity of plankton populations across a wide spatial scale in the BoB. The multifaceted effects of these physical processes on primary productivity thus play a prominent role in structuring of zooplankton communities and could consecutively affect the recruitment of pelagic fisheries.

Rapid response to coastal upwelling in a semienclosed bay

NASA Astrophysics Data System (ADS)

Gilcoto, Miguel; Largier, John L.; Barton, Eric D.; Piedracoba, Silvia; Torres, Ricardo; Graña, Rocío.; Alonso-Pérez, Fernando; Villacieros-Robineau, Nicolás.; de la Granda, Francisco

2017-03-01

Bays/estuaries forced by local wind show bidirectional exchange flow. When forced by remote wind, they exhibit unidirectional flow adjustment to coastal sea level. Acoustic Doppler Current Profiler observations over 1 year show that the Ria de Vigo (Iberian Upwelling) responds to coastal wind events with bidirectional exchange flow. The duration of the upwelling and downwelling events, estimated from the current variability, was 3.3 days and 2.6 days, respectively. Vectorial correlations reveal a rapid response to upwelling/downwelling, in which currents lag local wind by <6 h and remote wind by <14 h, less than the Ekman spinup (17.8 h). This rapidity arises from the ria's narrowness (nonrotational local response), equatorward orientation (additive remote and local wind responses), depth greater than the Ekman depth (penetration of shelf circulation into the interior), and vertical stratification (shear reinforcing shelf circulation). Similar rapid responses are expected in other narrow bays where local and remote winds act together and stratification enhances bidirectional flow.

Sensitivity studies with a coupled ice-ocean model of the marginal ice zone

NASA Technical Reports Server (NTRS)

Roed, L. P.

1983-01-01

An analytical coupled ice-ocean model is considered which is forced by a specified wind stress acting on the open ocean as well as the ice. The analysis supports the conjecture that the upwelling dynamics at ice edges can be understood by means of a simple analytical model. In similarity with coastal problems it is shown that the ice edge upwelling is determined by the net mass flux at the boundaries of the considered region. The model is used to study the sensitivity of the upwelling dynamics in the marginal ice zone to variation in the controlling parameters. These parameters consist of combinations of the drag coefficients used in the parameterization of the stresses on the three interfaces atmosphere-ice, atmosphere-ocean, and ice-ocean. The response is shown to be sensitive to variations in these parameters in that one set of parameters may give upwelling while a slightly different set of parameters may give downwelling.

Mantle convection pattern and subcrustal stress field under South America

NASA Technical Reports Server (NTRS)

Liu, H.-S.

1980-01-01

The tectonic, igneous and metallogenic features of South America are discussed in terms of the crustal deformation associated with stresses due to mantle convection as inferred from the high degree harmonics in the geopotential field. The application of Runcorn's model for the laminar viscous flows in the upper mantle to satellite and gravity data results in a convection pattern which reveals the ascending flows between the descending Nazca plate and the overlying South American plate as well as segments of the descending Nazca plate beneath South America. The arc volcanism in South America is shown apparently to be related to the upwelling of high-temperature material induced by the subduction of the Nazca plate, with the South American basin systems associated with downwelling mantle flows. The resulting tensional stress fields are shown to be regions of structural kinship characterized by major concentrations of ore deposits and related to the cordillera, shield and igneous systems and the upward Andean movements. It is suggested that the upwelling convection flows in the upper mantle, coupled with crustal tension, have provided an uplift mechanism which has forced the hydrothermal systems in the basement rocks to the surface.

Dynamical consequences of compositional and thermal density stratification beneath spreading centers

NASA Technical Reports Server (NTRS)

Sotin, C.; Parmentier, E. M.

1989-01-01

Dynamical consequences of compositional buoyancy and the combined effects of compositional and thermal buoyancy on mantle flow and crustal production are explored. The results show that for a low enough mantle viscosity, buoyant upwelling can significantly enhance the crustal thickness relative to that which would be produced by plate spreading alone, while for a mantle viscosity of 10 to the 22nd Pa s, upwelling due to plate spreading is dominant and crustal thickness is predicted to be a function of spreading rate. The results indicate that thermal and compositional density variations result in opposing buoyancy forces that can cause time-dependent upwelling.

A Comparison of the Role of Episode Nutrient Supply on Pathways of Carbon in Upwelling Regimes

NASA Technical Reports Server (NTRS)

Carr, M. E.

1997-01-01

Nutrient supply is episode in the ocean even in regions of fairly high and continuous nutrient supply, such as coastal upwelling regimes. The structure of the ecosystem depends on nutrient availability and the different requirements of phytoplankton cells.

Utilization of Ancillary Studies in the Cytologic Diagnosis of Respiratory Lesions

PubMed Central

Layfield, Lester J.; Roy-Chowdhuri, Sinchita; Baloch, Zubair; Ehya, Hormoz; Geisinger, Kim; Hsiao, Susan J.; Lin, Oscar; Lindeman, Neal I.; Roh, Michael; Schmitt, Fernando; Sidiropoulos, Nikoletta; VanderLaan, Paul A.

2017-01-01

The Papanicolaou Society of Cytopathology has developed a set of guidelines for respiratory cytology including indications for sputum examination, bronchial washings and brushings, CT-guided FNA and endobronchial ultrasound guided fine needle aspiration (EBUS-FNA), as well as recommendations for classification and criteria, ancillary testing and post-cytologic diagnosis management and follow-up. All recommendation documents are based on the expertise of committee members, an extensive literature review, and feedback from presentations at national and international conferences. The guideline documents selectively present the results of these discussions. The present document summarizes recommendations for ancillary testing of cytologic samples. Ancillary testing including microbiologic, immunocytochemical, flow cytometric, and molecular testing, including next-generation sequencing are discussed. PMID:27561242

Development and Utilization of the Regional Oceanic Modeling System (ROMS)

DTIC Science & Technology

2008-09-30

the Peru/ Chile Current system (PCS). Emphasis is put on the PCS due to its direct connection with the equatorial region; this makes it a good...nearshore wind drop-off that occurs in reality. Numerical simulations of the Peru/ Chile (PCS) and the California (CCS) upwelling systems are being... Chile and the USWC 4. More subtle effects of the wind/SST coupling on the mesoscale eddy activity are now investigated. RESULTS Since funds for

Water masses and mesoscale control on latitudinal and cross-shelf variations in larval fish assemblages off NW Africa

NASA Astrophysics Data System (ADS)

Olivar, M. Pilar; Sabatés, Ana; Pastor, Maria V.; Pelegrí, Josep L.

2016-11-01

We explore the associations between larval fish assemblages and oceanographic conditions in the upper ocean (top 200 m) along the African slope, from tropical (15°N) to subtropical (35°N) latitudes, during a period of intense upwelling. In this extensive region, the northward Mauritanian Current and Poleward Undercurrent carry South Atlantic Central Waters (SACW) while the southward Canary Upwelling Current transports North Atlantic Central Waters (NACW). South of Cape Blanc we only find SACW, and north of Cape Blanc there is NACW far offshore and a combination of NACW and SACW nearshore, separated by the Canary Upwelling Front (CUF). The larvae of different myctophid species serve as indicators of the water masses, e.g. S. veranyi and M. punctatum were found in some coastal stations that were dominated by NACW, while the tropical mesopelagic B. argyrogaster, H. macrochir, M. affine and S. kreffti were associated to the SACW. The along-slope offshore convergence of NACW and SACW takes place at the Cape Verde Frontal Zone (CVFZ), representing a region of extensive offshore export for larvae of coastal species, S. pilchardus and E. encrasicolus, far from their nearshore spawning area. The large-scale frontal systems (CVFZ and CUF) and mesoscale eddies contribute to retain larvae within productive waters, influencing both coastal and oceanic species.

Seasonal Synechococcus and Thaumarchaeal population dynamics examined with high resolution with remote in situ instrumentation

PubMed Central

Robidart, Julie C; Preston, Christina M; Paerl, Ryan W; Turk, Kendra A; Mosier, Annika C; Francis, Christopher A; Scholin, Christopher A; Zehr, Jonathan P

2012-01-01

Monterey Bay, CA is an Eastern boundary upwelling system that is nitrogen limited much of the year. In order to resolve population dynamics of microorganisms important for nutrient cycling in this region, we deployed the Environmental Sample Processor with quantitative PCR assays targeting both ribosomal RNA genes and functional genes for subclades of cyanobacteria (Synechococcus) and ammonia-oxidizing Archaea (Thaumarchaeota) populations. Results showed a strong correlation between Thaumarchaea abundances and nitrate during the spring upwelling but not the fall sampling period. In relatively stratified fall waters, the Thaumarchaeota community reached higher numbers than in the spring, and an unexpected positive correlation with chlorophyll concentration was observed. Further, we detected drops in Synechococcus abundance that occurred on short (that is, daily) time scales. Upwelling intensity and blooms of eukaryotic phytoplankton strongly influenced Synechococcus distributions in the spring and fall, revealing what appear to be the environmental limitations of Synechococcus populations in this region. Each of these findings has implications for Monterey Bay biogeochemistry. High-resolution sampling provides a better-resolved framework within which to observe changes in the plankton community. We conclude that controls on these ecosystems change on smaller scales than are routinely assessed, and that more predictable trends will be uncovered if they are evaluated within seasonal (monthly), rather than on annual or interannual scales. PMID:21975596

Connecting pigment composition and dissolved trace elements to phytoplankton population in the southern Benguela Upwelling zone (St. Helena Bay)

NASA Astrophysics Data System (ADS)

Das, Supriyo Kumar; Routh, Joyanto; Roychoudhury, Alakendra N.; Veldhuis, Marcel J. W.; Ismail, Hassan E.

2017-12-01

Rich in upwelled nutrients, the Southern Benguela is one of the most productive ecosystems in the world ocean. However, despite its ecological significance the role of trace elements influencing phytoplankton population in the Southern Benguela Upwelling System (SBUS) has not been thoroughly investigated. Here, we report pigment composition, macronutrients (nitrate, phosphate and silicate) and concentrations of dissolved Cd, Co, Fe and Zn during late austral summer and winter seasons in 2004 to understand the relationship between the selected trace elements and phytoplankton biomass in St. Helena Bay (SHB), which falls within the southern boundary of the SBUS. Chlorophyll a concentrations indicate higher phytoplankton biomass associated with high primary production during late summer in SHB where high diatom population is inferred from the presence of fucoxanthin. Diminished phytoplankton biomass and a shift from diatoms to dinoflagellates as the dominant phytoplankton taxa are indicated by diagnostic pigments during late winter. Dissolved trace elements (Cd, Co and Zn) and macronutrients play a significant role in phytoplankton biomass, and their distribution is affected by biological uptake and export of trace elements. Continuous uptake of Zn by diatoms may cause an onset of Zn depletion leading to a period of extended diatom proliferation during late summer. Furthermore, the transition from diatom to dinoflagellate dominated phytoplankton population is most likely facilitated by depletion of trace elements (Cd and Co) in the water column.

Modelling the upwelling offthe east Hainan Island coast in summer 2010

NASA Astrophysics Data System (ADS)

Bai, Peng; Gu, Yanzhen; Li, Peiliang; Wu, Kejian

2016-11-01

A synoptic-scale upwelling event that developed offthe east coast of the Hainan Island (EHIU) in the summer of 2010 is defined well via processing the Moderate Resolution Imaging Spectroradiometer (MODIS) sea surface temperature (SST) data. The Regional Ocean Modeling System (ROMS) with high spatial resolution has been used to investigate this upwelling event. By comparing the ROMS results against tide station data, Argo float profiles and MODIS SST, it is confirmed that the ROMS reproduces the EHIU well. The cooler-water core (CWC) distinguished by waters < 27.5°C in the EHIU, which occurred in the east Qiongzhou Strait mouth area and was bounded by a high temperature gradient, was the focus of this paper. Vertical structure of the CWC suggests that interaction between the westward flow and the bathymetry slope played a significant role in the formation of CWC. Numerical experiments indicated that the westward flow in the Qiongzhou Strait was the result of tidal rectification over variable topography (Shi et al., 2002), thus tides played a critical role on the development of the CWC. The negative wind stress curl that dominated the east Qiongzhou Strait mouth area suppressed the intensity of the CWC by 0.2-0.4°C. Further, nonlinear interaction between tidal currents and wind stress enhanced vertical mixing greatly, which would benefit the development of the CWC.

Community response of zooplankton to oceanographic changes (2002-2012) in the central/southern upwelling system of Chile

NASA Astrophysics Data System (ADS)

Medellín-Mora, Johanna; Escribano, Ruben; Schneider, Wolfgang

2016-03-01

A 10-year time series (2002-2012) at Station 18 off central/southern Chile allowed us to study variations in zooplankton along with interannual variability and trends in oceanographic conditions. We used an automated analysis program (ZooImage) to assess changes in the mesozooplankton size structure and the composition of the taxa throughout the entire community. Oceanographic conditions changed over the decade: the water column became less stratified, more saline, and colder; the mixed layer deepened; and the oxygen minimum zone became shallower during the second half of the time series (2008-2012) in comparison with the first period (2002-2007). Both the size structure and composition of the zooplankton were significantly associated with oceanographic changes. Taxonomic and size diversity of the zooplankton community increased to the more recent period. For the second period, small sized copepods (<1 mm) decreased in abundance, being replaced by larger sized (>1.5 mm) and medium size copepods (1-1.5 mm), whereas euphausiids, decapod larvae, appendicularian and ostracods increased their abundance during the second period. These findings indicated that the zooplankton community structure in this eastern boundary ecosystem was strongly influenced by variability of the upwelling process. Thus, climate-induced forcing of upwelling trends can alter the zooplankton community in this highly productive region with potential consequences for the ecosystem food web.

Why coastal upwelling is expected to increase along the western Iberian Peninsula over the next century?

PubMed

Sousa, Magda Catarina; deCastro, Maite; Alvarez, Ines; Gomez-Gesteira, Moncho; Dias, João Miguel

2017-08-15

Former studies about coastal upwelling along the Western Iberian Peninsula (WIP) using historical data indicated contradictory results, showing either its strengthening or reduction, while previous studies using Global Climate Models (GCMs) indicated that global warming is likely to intensify this phenomenon although predicting different rates and not justifying the patterns found. Taking advantage of the recent high spatial resolution Regional Climate Models (RCMs) projections from EURO-CORDEX project (Representative Concentration Pathway, RCP 8.5), detailed higher accuracy estimations of the spatio-temporal trends of Upwelling Index (UI) along the WIP coast were performed in this study, integrating the coastal mesoscale effects within the framework of climate change. Additionally, this research brings new insights about the origin of the WIP coastal upwelling intensification over the next century. These new projections clarified the upwelling strengthening rates predicted along the coast of the WIP from 2006 to 2099 revealing more prominent changes in the northern limit of the region (25-30m 3 s -1 km -1 per decade between 41.5 and 42.5°N). Trends observed at high latitudes of the region were found to be induced by the displacement of the Azores High, which will intensify (0.03hPa per decade) and drift northeastward (10km per decade) during the 21st century. Copyright © 2017 Elsevier B.V. All rights reserved.

Evaluation of the ecological integrity and ecosystem health of three benthic networks influenced by coastal upwelling in the northern Chile

EPA Science Inventory

The ecological health of ecosystems relates to the maintenance or restoration of optimal system function when confronted with a disturbance. A healthy ecosystem is a prerequisite for ecological sustainability. Ecological integrity has been defined as an emergent property of ecosy...

Variability of the Somali Current and eddies during the southwest monsoon regimes

NASA Astrophysics Data System (ADS)

Trott, Corinne B.; Subrahmanyam, Bulusu; Murty, V. S. N.

2017-09-01

The meso-scale eddies and currents in the Arabian Sea are analyzed using different satellite observations, Simple Oceanic Data Assimilation (SODA) reanalysis, and Ocean Reanalysis System 4 (ORAS4) from 1993 to 2016 to investigate the impacts of Southwest (SW) Monsoon strength on Somali Current (SC) mesoscale circulations such as the Great Whirl (GW), the Socotra Eddy (SE), the Southern Gyre (SG), and smaller eddies. Increased Ekman pumping during stronger SW monsoons strengthens coastal upwelling along the Somali coast. The Arabian Sea basin-wide anticyclonic circulation and presence of the GW form mesoscale circulation patterns favourable to advection of upwelled waters eastward into the central Arabian Sea. In September, after the SW monsoon winds reach peak strength in July and August, a higher number of discrete anticyclonic eddies with higher (> 20 cm) sea surface height anomalies develop in strong and normal intensity SW monsoon seasons than weaker SW monsoon seasons.

On the "hidden" phytoplankton blooms on Australia's southern shelves

NASA Astrophysics Data System (ADS)

Kämpf, Jochen; Kavi, Ankit

2017-02-01

Phytoplankton blooms on Australia's southern shelves are revisited using satellite-derived monthly data of chlorophyll a concentrations for the period 2003-2015. It is known that the region hosts a seasonal coastal upwelling system that develops in austral summer (January-March) with chlorophyll a concentrations of >2 mg/m3. While this summer upwelling is spatially limited to a few hot spots, here we show that widespread phytoplankton blooms of moderate ( 1 mg/m3) chlorophyll a concentrations develop during autumn and early winter on most of Australia's extensive southern shelves—from the vast shelves of the Great Australian Bight (GAB) in the west to Bass Strait in the east. This surprising finding disproves the widespread belief that shelf waters of the GAB are generally oligotrophic and may explain the relatively high abundance of both forage fish (sardines) and upper trophic-level predators (e.g., tuna and whales) in the region.

Effect of atmospheric scattering and surface reflection on upwelling solar radiation

NASA Technical Reports Server (NTRS)

Suttles, J. T.; Barkstrom, B. R.; Tiwari, S. N.

1981-01-01

A study is presented of the solar radiation transfer in the complete earth-atmosphere system, and numerical results are compared with satellite data obtained during the Earth Radiation Budget Experiment on Nimbus 6, in August, 1975. Emphasis is placed on the upwelling radiance distribution at the top of the atmosphere, assumed to be at 50 km. The numerical technique is based on the finite difference method, which includes azimuth and spectral variations for the entire solar wavelength range. Detailed solar properties, atmospheric physical properties, and optical properties are used. However, since the property descriptions are based on a trade-off between accuracy and computational realities, aerosol and cloud optical properties are treated with simple approximations. The radiative transfer model is in good agreement with the satellite radiance observations. The method provides a valuable tool in analyzing satellite- and ground-based radiation budget measurements and in designing instrumentation.

Abyssal Upwelling in Mid-Ocean Ridge Fracture Zones

NASA Astrophysics Data System (ADS)

Clément, Louis; Thurnherr, Andreas M.

2018-03-01

Turbulence in the abyssal ocean plays a fundamental role in the climate system by sustaining the deepest branch of the overturning circulation. Over the western flank of the Mid-Atlantic Ridge in the South Atlantic, previously observed bottom-intensified and tidally modulated mixing of abyssal waters appears to imply a counterintuitive densification of deep and bottom waters. Here we show that inside fracture zones, however, turbulence is elevated away from the seafloor because of intensified downward propagating near-inertial wave energy, which decays below a subinertial shear maximum. Ray-tracing simulations predict a decay of wave energy subsequent to wave-mean flow interactions. The hypothesized wave-mean flow interactions drive a deep flow toward lighter densities of up to 0.6 Sv over the mid-ocean ridge flank in the Brazil Basin, and the same process may also cause upwelling of abyssal waters in other ocean basins with mid-ocean ridges with fracture zones.

Particle Fluxes and Bulk Geochemical Characterization of the Cabo Frio Upwelling System in Southeastern Brazil: Sediment Trap Experiments between Spring 2010 and Summer 2012.

PubMed

Albuquerque, Ana Luiza S; Belém, André L; Zuluaga, Francisco J B; Cordeiro, Livia G M; Mendoza, Ursula; Knoppers, Bastiaan A; Gurgel, Marcio H C; Meyers, Philip A; Capilla, Ramsés

2014-05-14

Physical and biogeochemical processes in continental shelves act synergistically in both transporting and transforming suspended material, and ocean dynamics control the dispersion of particles by the coastal zone and their subsequent mixing and dilution within the shelf area constrained by oceanic boundary currents, followed by their gradual settling in a complex sedimentary scenario. One of these regions is the Cabo Frio Upwelling System located in a significantly productive area of Southeastern Brazil, under the control of the nutrient-poor western boundary Brazil Current but also with a wind-driven coastal upwelling zone, inducing cold-water intrusions of South Atlantic Central Water on the shelf. To understand these synergic interactions among physical and biogeochemical processes in the Cabo Frio shelf, a series of four experiments with a total of 98 discrete samples using sediment traps was performed from November 2010 to March 2012, located on the 145 m isobath on the edge of the continental shelf. The results showed that lateral transport might be relevant in some cases, especially in deep layers, although no clear seasonal cycle was detected. Two main physical-geochemical coupling scenarios were identified: singular downwelling events that can enhance particles fluxes and are potentially related to the Brazil Current oscillations; and events of significant fluxes related to the intrusion of the 18°C isotherm in the euphotic zone. The particulate matter settling in the Cabo Frio shelf area seems to belong to multiple marine and terrestrial sources, in which both Paraiba do Sul River and Guanabara Bay could be potential land-sources, although the particulate material might subject intense transformation (diagenesis) during its trajectory to the shelf edge.

Changes in optical characteristics of surface microlayers in the Peruvian upwelling region hint to photochemically and microbially-mediated DOM turnover

NASA Astrophysics Data System (ADS)

Engel, A.; Galgani, L.

2016-02-01

The coastal upwelling system off Peru is characterized by high biological activity and associated subsurface oxygen minimum zone, leading to an enhanced emission of atmospheric trace gases. High biological productivity in the water column may promote the establishment of enriched organic surface films, key environments for processes regulating gas fluxes across the water-air interface. During M91 cruise to the Peruvian upwelling, we focused our attention on the composition of the sea-surface microlayer (SML), the oceanic uppermost boundary directly subject to high solar radiation, often enriched in specific organic compounds of biological origin like Chromophoric Dissolved Organic Matter (CDOM) and marine gels. In the SML, the continuous photochemical and microbial recycling of organic matter may strongly influence gas exchange between marine systems and the atmosphere. In order to understand organic matter cycling in surface films, we analyzed SML and underlying water samples in 38 stations determining DOC concentrations, amino acids composition, marine gels, CDOM and bacterial abundance as indicators of photochemical and microbial alteration processes. CDOM composition was characterized by spectral slopes (S) values and Excitation-Emission Matrix fluorescence (EEMs), which allow to track changes in molecular weight (MW) of DOM, and to determine potential DOM sources. Profound changes in spectral slope properties were observed suggesting smaller MW CDOM in the SML compared to underlying water. Microbial and photochemical degradation are likely the main drivers for organic matter cycling in the top layer of the ocean. Consequences on the formation of inorganic and organic species highly relevant for air-sea gas exchange and for climate dynamics will be discussed.

Mesoscale Structure of Bio-Optical Properties Within the Northern California Current System, 2000-2002

NASA Astrophysics Data System (ADS)

Cowles, T. J.; Barth, J. A.; Wingard, C. E.; Desiderio, R. A.; Letelier, R. M.; Pierce, S. D.

2002-12-01

Mesoscale mapping of the hydrographic and bio-optical properties of the Northern California Current System was conducted during spring and summer 2000, 2001, and 2002 off the Oregon coast. A towed, undulating vehicle carried a CTD, two fluorometers, a multi-wavelength absorption and attenuation meter (ac-9), and a PAR sensor. In addition, an ac-9 and a Fast Repetition Rate fluorometer (FRRf) collected bio-optical data on surface waters throughout the mesoscale surveys. Multiple onshore-offshore transect lines provided repeated crossings of velocity jet and frontal boundaries, and allowed resolution of physical and bio-optical parameters on horizontal scales of 1km or less and on vertical scales of 1-2m. Our multi-year results permit assessment of the linkages and the degree of coupling between physical and bio-optical patterns during strong upwelling and strong downwelling events, as well as during low-wind relaxation intervals. The location of the coastal jet and the upwelling front fluctuated considerably under the variable forcing regime, with more extensive mesoscale structure in all parameters in late summer relative to spring, as current meanders developed around subsurface topography (Heceta Bank) and moved offshore near Cape Blanco. Sharp horizontal gradients in autotrophic biomass were observed across the boundaries of the coastal jet and the upwelling front, with chlorophyll levels often in excess of 5-10 mg m-3 on the inshore side of the fronts. Horizontal gradients also were observed in the spectral slope of attenuation and dissolved absorption as well as in the physiological properties of the autotrophic assemblages (as determined with FRRf). Details of the spatial correlations of physical and bio-optical parameters will be presented.

Bacterial community characterization and biogeochemistry of sediments from a tropical upwelling system (Cabo Frio, Southeastern Brazil)

NASA Astrophysics Data System (ADS)

Castelo-Branco, R.; Barreiro, A.; Silva, F. S.; Carvalhal-Gomes, S. B. V.; Fontana, L. F.; Mendonça-Filho, J. G.; Vasconcelos, V.

2016-11-01

The Cabo Frio Upwelling System is one of the largest and most productive areas in southeastern Brazil. Although it is well-known that bacterial communities play a crucial role in the biogeochemical cycles and food chain of marine ecosystems, little is known regarding the microbial communities in the sediments of this upwelling region. In this research, we address the effect of different hydrological conditions on the biogeochemistry of sediments and the diversity of bacterial communities. Biogeochemistry profiles of sediments from four sampling stations along an inner-outer transect on the continental shelf were evaluated and denaturing gradient gel electrophoresis (DGGE) of PCR-amplified 16S rRNA gene fragments was used to study the bacterial community composition in these sediments. Our sequencing analysis of excised bands identified Alpha- and Gammaproteobacteria, Bacteroidetes and bacteria belonging to the Firmicutes phyla as the phylogenetic groups, indicating the existence of great diversity in these marine sediments. In this multidisciplinary study, the use of multivariate analysis was crucial for understanding how biogeochemical profiles influence bacterial community distribution. A Principal Component Analysis (PCA) indicated that the biogeochemical variables exhibited a clear spatial pattern that is mainly related to hydrological conditions. A Correspondence Analysis (CA) revealed an important association between certain taxonomic groups and specific sampling locations. Canonical Correspondence Analysis (CCA) demonstrated that the biogeochemistry influences the structure of the bacterial community in sediments. Among the bacterial groups identified, the most taxonomically diverse classes (Alphaproteobacteria and Gammaproteobacteria) were found to be distributed regardless of any studied biogeochemical variables influences, whereas other groups responded to biogeochemical conditions which, in turn, were influenced by hydrological conditions. This finding was observed for members of the two classes in the Bacteroidetes phylum, which were associated with either proteins or carbohydrates.

Dynamic of aragonite saturation horizon in waters of Baja California, Mexico

NASA Astrophysics Data System (ADS)

Valencia Gasti, J. A.; Oliva, N. L.; Martin Hernandez-Ayon, J. M.; Durazo, R.; Santamaria-del-Angel, E.; Alin, S. R.; Feely, R. A.

2016-02-01

The status of the ocean acidification can be estimated by hydrographic calibrated data with carbon system variables. Recently empirical models for the coast of southern California and northern Baja California were developed. These models can be applied mainly in places where hydrographic data exist but also with measurements of the carbon system available for calibrations. The aim of this study was to analyze the hydrographic data of a transect in front of Ensenada's coast, corresponding to the line 100 of IMECOCAL's program during the period 1998-2014. Such data was used to apply an empirical model to estimate the aragonite saturation state (Ωa) in order to identify oceanographic conditions that could influence the variability of the depth of saturation horizon that might be in the last 17 years in habitats of shellfish and oyster production areas adjacent to the coast of Ensenada. It was found that the temperature, salinity, oxygen, pH, dissolved inorganic carbon and Ωa showed a seasonal variation with different oceanographic scenarios: (a) during spring-summer the California Current flow to the Ecuador and upwelling events are presented; (b) in autumn-winter the influence the Southern California Bight Eddy can transport water from the subarctic to Ecuador in the oceanic portion of the transect and towards the pole at the coastal side. These oceanographic characteristics encourage that coastal stations present seasonal variability, reflected in the depth of the horizon Ωa shallower ( 66m + 21m) in spring and deeper into the winter ( 122m + 35). It has been reported that the upwelling off the coast of BC transport water from a depth between 80 and 90m in spring and summer; therefore under saturated water (Ωa <1) may be transported to the platform upwelling off the coast of BC

Who’s on top? SST proxy comparison from the Peru Margin Upwelling System

NASA Astrophysics Data System (ADS)

Chazen, C.; Herbert, T.; Altabet, M. A.

2009-12-01

The Peru Margin upwelling region is situated at the interface between the poleward Peru Undercurrent and the equatorward Peru Coastal current. Strong coastal winds force cold, nutrient-rich thermocline waters to the surface. Sea surface temperatures in this region fluctuate sub-annually with changes in the position of the Intertropical convergence zone (ITCZ) and sub-decadally with modifications in the strength of Walker Circulation. In contrast, the temperature of the Peru Margin thermocline is stable, isolated from surface winds and slow to respond to major perturbations in surface temperature. Using high resolution sampling (6-7 year) across an annually laminated sediment core from the heart of the Peru Margin upwelling system (15°S) we explore how Uk’37 temperatures compare with TEX86 temperatures across a 200-year interval in the Mid-late Holocene. Mean late Holocene Uk’37 temperatures, extracted from a high sedimentation rate core from the Peru Margin are similar to modern mean annual sea surface temperatures at 15°S. Multi-decadal-scale (50-100 year) Uk’37 temperature fluctuations oscillate about the mean by 1.5°C. These rapid temperature changes are coherent with fluctuations in surface productivity (C37total and Biogenic Silica) in addition to sub-surface denitrification (δ15N). In contrast, TEX86 temperatures derived from identical samples exhibit colder temperatures than modern mean annual conditions and virtually no temperature fluctuation. We posit that TEX86 values are recording temperatures below the photic zone near the mix-layer-thermocline boundary and may, on longer timescales provide invaluable information about thermocline temperature. With this interpretation in mind, we present a TEX86-based long-term thermocline reconstruction over the Holocene.

Sources of Nutrients to Nearshore Areas of a Eutrophic Estuary: Implications for Nutrient-Enhanced Acidification in Puget Sound

NASA Astrophysics Data System (ADS)

Pacella, S. R.

2016-02-01

Ocean acidification has recently been highlighted as a major stressor for coastal organisms. Further work is needed to assess the role of anthropogenic nutrient additions in eutrophied systems on local biological processes, and how this interacts with CO2 emission-driven acidification. This study sought to distinguish changes in pH caused by natural versus anthropogenically affected processes. We quantified the variability in water column pH attributable to primary production and respiration fueled by anthropogenically derived nitrogen in a shallow nearshore area. Two study sites were located in shallow subtidal areas of the Snohomish River estuary, a eutrophic system located in central Puget Sound, Washington. These sites were chosen due to the presence of heavy agricultural activity, urbanized areas with associated waste water treatment, as well as influence from deep, high CO2 marine waters transported through the Strait of Juan de Fuca and upwelled into the area during spring and summer. Data was collected from July-December 2015 utilizing continuous moorings and discrete water column sampling. Analysis of stable isotopes, δ15N, δ18O-NO3, δ15N-NH4, was used to estimate the relative contributions of anthropogenic versus upwelled marine nitrogen sources. Continuous monitoring of pH, dissolved oxygen, temperature, and salinity was conducted at both study sites to link changes in nutrient source and availability with changes in pH. We predicted that isotope data would indicate greater contributions of nitrogen from agriculture and wastewater rather than upwelling in the shallow, nearshore study sites. This study seeks to distinguish the relative magnitude of pH change stimulated by anthropogenic versus natural sources of nitrogen to inform public policy decisions in critically important nearshore ecosystems.

UPWELLING EFFECTS ON THE DISTRIBUTION OF NITRATE IN YAQUINA BAY, A COASTAL OREGON ESTUARY

EPA Science Inventory

Coastal Oregon in the summer is dominated by northwesterly winds. Upwelling of nutrient-rich water into the nearshore is controlled by the velocity and duration of these summer winds. Yaquina Bay estuary is a mesotidal drowned river valley that is typically vertically well-mixed ...

Evolution of the earliest mantle caused by the magmatism-mantle upwelling feedback: Implications for the Moon and the Earth

NASA Astrophysics Data System (ADS)

Ogawa, M.

2017-12-01

The two most important agents that cause mantle evolution are magmatism and mantle convection. My earlier 2D numerical models of a coupled magmatism-mantle convection system show that these two agents strongly couple each other, when the Rayleigh number Ra is sufficiently high: magmatism induced by a mantle upwelling flow boosts the upwelling flow itself. The mantle convection enhanced by this positive feedback (the magmatism-mantle upwelling, or MMU, feedback) causes vigorous magmatism and, at the same time, strongly stirs the mantle. I explored how the MMU feedback influences the evolution of the earliest mantle that contains the magma ocean, based on a numerical model where the mantle is hot and its topmost 1/3 is partially molten at the beginning of the calculation: The evolution drastically changes its style, as Ra exceeds the threshold for onset of the MMU feedback, around 107. At Ra < 107, basaltic materials generated by the initial widespread magmatism accumulate in the deep mantle to form a layer; the basaltic layer is colder than the overlying shallow mantle. At Ra > 107, however, the mantle remains compositionally more homogeneous in spite of the widespread magmatism, and the deep mantle remains hotter than the shallow mantle, because of the strong convective stirring caused by the feedback. The threshold value suggests that the mantle of a planet larger than Mars evolves in a way substantially different from that in the Moon does. Indeed, in my earlier models, magmatism makes the early mantle compositionally stratified in the Moon, but the effects of strong convective stirring overwhelms that of magmatism to keep the mantle compositionally rather homogeneous in Venus and the Earth. The MMU feedback is likely to be a key to understanding why vestiges of the magma ocean are so scarce in the Earth.

On the Influence of Anthropogenic Forcings on Changes in the Stratospheric Mean Age

NASA Technical Reports Server (NTRS)

Oman, Luke; Waugh, Darryn W.; Pawson, Steven; Stolarski, Richard S.; Newman, Paul A.

2009-01-01

A common feature of stratospheric simulations of the past or future is an increase in tropical upwelling and a decrease in mean age. Possible causes or these changes include (1) increases in tropical sea surface temperatures (SSTs) driven by increases in well-mixed greenhouse gases (WMGHGs), (2) the direct radiative effect of increases in WMGHGs, and (3) changes in ozone. Here we examine a suite of simulations from the Goddard Earth Observing System chemistry-climate model (GEOS CCM) to isolate the relative role of these three factors. Our analysis indicates that all three factors cause changes in the mean age, but the relative impact of each factor depends on the time period analyzed. Over the past 30-40 years ozone depletion is the major factor causing the decrease in mean age, with negligible changes due to direct radiative impact of WMGHG's. However, ozone is predicted to recover back to 1970 levels during the next 50-60 years, and this causes an increase in the mean age, whereas the continued increase in SSTs from increased levels of WMGHGs and the direct radiative impact of WMGHGs will still cause a decrease in the mean age. The net impact of these factors will still result in a decreasing mean age although the rate will be smaller than that of the past. The decreases in mean age are primarily caused by increases in upwelling in the tropical lower stratosphere. The increased upwelling from both increased tropical SSTs and polar ozone loss appears to be related to changes in zonal winds and increases in wave activity propagating into the stratosphere. The different contributions of changes in SSTs, WMGHGs, and ozone to the circulation of the stratosphere may help explain the large spread in the rate of change of tropical upwelling seen in previous studies.

Study of hydro-saline characteristics of soils a palm grove in basin of Ouargla (Northern Algerian Sahara)

NASA Astrophysics Data System (ADS)

Rezagui, D.; Bouhoun, M. Daddi; Boutoutaou, D.; Djaghoubi, A.

2016-07-01

Saharan soils are often faced with several problems of development, taking account the hydro-edaphic constraints, mainly of hydric types by water table, mechanical by gypso-calcareous crusts and saline by irrigation waters and upwelling of water table. Our work consists in doing a soil characterization of a palm grove in Ouargla in order to study the constraints hydro-halomorphes. The results show that irrigation water by two plies of Senonian and Mioplcène had a high salinity with a value of 2.83 and 5.10 dS.m-1 respectively. The conduct of irrigation is traditional random of submersion type. The palm grove has a poor drainage with a level of water table 156.67±15.71 cm and salinity of 31.37±34.04 dS.m-1. The drains are open type and their maintenance is not regular. This situation of management of irrigation-drainage promotes the upwelling of water table and the waterlogging in soils. The study of soil profiles shows the existence of mechanical obstruction of gypso-calcareous crusts which limit the entrenchment of the date palms and the leaching of salts. Soil salinity is excessive in profiles with a range of 8.98 ± 4.58 dS.m-1. This accumulation of salts is due to the dynamic ascending and descending of salts respectively under the effect of upwelling of water table and leaching by irrigation. The salinization, the upwelling of water table and the presence of gypso-calcareous crusts recorded in Ouargla testify to a degradation hydro-halomorphe and mechanic of soil which constitute the major constraints in the management of system irrigation-drainage and sustainable agricultural development of the palm groves of the basin of Ouargla. Some hydro-agricultural planning are necessary to apply in the oasis to improve the hydro-mechanical properties of soils in order to reduce their degradation.

Bio-optical signatures and biogeochemistry from intense upwelling and relaxation in coastal California

NASA Astrophysics Data System (ADS)

Kudela, Raphael M.; Garfield, Newell; Bruland, Kenneth W.

2006-12-01

The NSF-sponsored Coastal Ocean Processes Wind Events and Shelf Transport (WEST) experiment investigates the interplay between wind-driven transport and shelf productivity; while eastern boundary shelves are characterized by high productivity due to upward fluxes of nutrients into the euphotic zone, wind forcing also represents negative physical and biological controls via offshore transport and deep (light-limiting) mixing of primary producers. Although this interaction has been well documented for eastern boundary systems generally and for California specifically, one of the primary goals of WEST was to characterize more fully the interplay between positive and negative effects of wind stress, which result in the consistently elevated biological productivity in these shelf regions. During 3 month-long summer cruises (2000-2002) we observed extremes in upwelling/relaxation, using both in situ instrumentation and remotely sensed data. Relationships between optical and physical properties were examined, with emphasis on biogeochemical implications. During 2000, the WEST region was optically dominated by phytoplankton and covarying constituents. During 2001 and 2002, periods of more intense upwelling favorable winds, we observed a transition to optical properties dominated by detrital and inorganic materials. In all years, the continental shelf break provided a natural boundary between optically distinct shelf and open ocean waters. During 2002, we obtained discrete trace-metal measurements of particulate iron and aluminum; we develop a bio-optical proxy for acetic-acid leachable iron from backscatter and fluorescence, and demonstrate that particulate iron is not well correlated to traditional upwelling proxies such as macronutrients, temperature, and salinity. We conclude that the shelf break between ca. 100 and 200 m water depth serves as a natural break point between coastal and oceanic water masses in this region, and that the elevated biomass and productivity associated with this eastern boundary current regime is dominated by these iron rich, shallow shelf waters.

Coastal counter-currents setup patterns in the Gulf of Cadiz

NASA Astrophysics Data System (ADS)

Relvas, P.; Juniór, L.; Garel, E.; Drago, T.

2017-12-01

Alongshore coastal counter-currents (CCC) are frequent features of Eastern Boundary Upwelling Systems, where they temporally alternate with upwelling driven jets of opposite direction. Along the northern margin of the Gulf of Cadiz inner shelf, these CCCs are oriented poleward (eastward) and responsible for sharp temperature increases during the upwelling season, along with potential decline in water quality at the coast. This research is based on a multi-year ADCP velocity time-series (2008-2017), recorded at a single location (23 m water depth) over 13 deployments up to 3 months-long. The analysis focuses on the water column alongshore velocities during current inversions (i.e., the transition from equatorward upwelling jets to poleward CCCs). A set of parameters were derived from the flow structure to identify distinct types of inversions and to hypothesize about their driving mechanisms. Results show that 77% of the inversions start near the bed, propagating then to the upper layers. The bottom layer also changes direction before the surface layer for most events (71%). The vertical shear in this case is one order of magnitude greater than in the (less frequent) opposite situation. No seasonal variability is observed in the CCC occurrences. However, the parameters analysed in this study suggest different types of inversion between winter and summer. In winter, inversions are well defined (low variability), with similar patterns near the surface and bed layers as a result of a strong barotropic component. In summer the inversion patterns are more variable. In particular, the upper and bed layers are often importantly decoupled during inversions, indicating the strengthening of baroclinicity. A categorization of inversions events is proposed based on cross-correlation and multi-variable analyses of the developed parameters. Various types of inversion are obtained, suggesting that CCCs are driven by different forcings that may act separately or jointly.

Differences in coastal and oceanic SST trends north of Yucatan Peninsula

NASA Astrophysics Data System (ADS)

Varela, R.; Costoya, X.; Enriquez, C.; Santos, F.; Gómez-Gesteira, M.

2018-06-01

The coastal area north of Yucatan has experienced a cooling SST trend from 1982 to 2015 during the upwelling season (May-September) that contrasts with the warming observed at the adjacent ocean area. Different drivers were analyzed to identify the possible causes of that unusual coastal cooling. Changes in coastal upwelling and in sea-atmosphere heat fluxes are not consistent with the observed coastal cooling. The eastward shift of the Yucatan Current observed over the last decades is hypothesized as the most probable cause of coastal cooling. This shift enhances the vertical transport of cold deeper water to the continental shelf from where it is pumped to the surface by upwelling favorable westerly winds.

Evaluation of ERTS data for certain oceanographic uses. [upwelling, water circulation, and pollution in Great Lakes

NASA Technical Reports Server (NTRS)

Strong, A. E. (Principal Investigator)

1973-01-01

The author has identified the following significant results. Upwelling along the eastern shore of Lake Michigan was occurring during the 3 and 21 August 1973 visits by ERTS-1. The NOAA-2 VHRR thermal-IR data are being digitized for comparison. Early indications are that these upwellings induced a calcium carbonate precipitate to form in the surface waters. It is most pronounced in the MSS-4 channel. On the lake bottom this jell-like sediment is known as marl and adds to the eutrophication of the lake. This phenomenon may help to explain the varve-like nature of bottom cores that have been observed in the Great Lakes.

Diagnosis of small pulmonary lesions by transbronchial lung biopsy with radial endobronchial ultrasound and virtual bronchoscopic navigation versus CT-guided transthoracic needle biopsy: A systematic review and meta-analysis

PubMed Central

Han, Yeji; Kim, Hyun Jung; Kong, Kyoung Ae; Kim, Soo Jung; Lee, Su Hwan; Ryu, Yon Ju; Lee, Jin Hwa; Kim, Yookyoung; Shim, Sung Shine

2018-01-01

Background Advances in bronchoscopy and CT-guided lung biopsy have improved the evaluation of small pulmonary lesions (PLs), leading to an increase in preoperative histological diagnosis. We aimed to evaluate the efficacy and safety of transbronchial lung biopsy using radial endobronchial ultrasound and virtual bronchoscopic navigation (TBLB-rEBUS&VBN) and CT-guided transthoracic needle biopsy (CT-TNB) for tissue diagnosis of small PLs. Methods A systematic search was performed in five electronic databases, including MEDLINE, EMBASE, Cochrane Library Central Register of Controlled Trials, Web of Science, and Scopus, for relevant studies in May 2016; the selected articles were assessed using meta-analysis. The articles were limited to those published after 2000 that studied small PLs ≤ 3 cm in diameter. Results From 7345 records, 9 articles on the bronchoscopic (BR) approach and 15 articles on the percutaneous (PC) approach were selected. The pooled diagnostic yield was 75% (95% confidence interval [CI], 69–80) using the BR approach and 93% (95% CI, 90–96) using the PC approach. For PLs ≤ 2 cm, the PC approach (pooled diagnostic yield: 92%, 95% CI: 88–95) was superior to the BR approach (66%, 95% CI: 55–76). However, for PLs > 2 cm but ≤ 3 cm, the diagnostic yield using the BR approach was improved to 81% (95% CI, 75–85). Complications of pneumothorax and hemorrhage were rare with the BR approach but common with the PC approach. Conclusions CT-TNB was superior to TBLB-rEBUS&VBN for the evaluation of small PLs. However, for lesions greater than 2 cm, the BR approach may be considered considering its diagnostic yield of over 80% and the low risk of procedure-related complications. PMID:29357388

Noninvasive Tissue Characterization of Lung Tumors Using Integrated Backscatter Intravascular Ultrasound: An Ex Vivo Comparative Study With Pathological Diagnosis.

PubMed

Ito, Fumitaka; Kawasaki, Masanori; Ohno, Yasushi; Toyoshi, Sayaka; Morishita, Megumi; Kaito, Daizo; Yanase, Komei; Funaguchi, Norihiko; Asano, Masahiro; Endo, Junki; Mori, Hidenori; Kobayashi, Kazuhiro; Nishigaki, Kazuhiko; Miyazaki, Tatsuhiko; Takemura, Genzou; Minatoguchi, Shinya

2016-05-01

Endobronchial ultrasonography (EBUS) facilitates a lung cancer diagnosis. However, qualitative tissue characterization of lung tumors is difficult using EBUS. Integrated backscatter (IBS) is an ultrasound technique that calculates the power of the ultrasound signal to characterize tissue components in coronary arteries. We hypothesized that qualitative diagnosis of lung tumors is possible using the IBS technique. The aim of the present study was to elucidate whether the IBS technique can be used in lung tissue diagnoses. Thirty-five consecutive patients who underwent surgery for lung cancer were prospectively enrolled. Surgical specimens of the lung and the tumor tissue were obtained, and the IBS values were measured within 48 h after surgery. Histologic images of lung and tumor tissues were compared with IBS values, and the relative interstitial area according to results of Masson's trichrome staining were determined by using an imaging processor. The IBS values in tumor tissue were significantly lower than those in normal lung tissue (-50.9 ± 2.6 dB and -47.6 ± 2.6 dB, respectively; P < .001). The IBS values of adenocarcinomas associated with a good 5-year survival rate were higher than those of non-adenocarcinomas (-48.1 ± 1.6 dB and -52.6 ± 1.4 dB; P < .001). There were significant correlations between the IBS values and the relative interstitial area or micro air area in tumor (r = 0.53 and r = 0.67; P < .01). After combining normal lung tissue and adenocarcinomas with a good prognosis, the sensitivity and specificity for establishing the presence of lung tumors were 84% and 85%. Qualitative diagnosis of lung tumors was possible, with a sensitivity of 84% and a specificity of 85%, using the ultrasound IBS technique. Copyright © 2016 American College of Chest Physicians. Published by Elsevier Inc. All rights reserved.

A simple predictive model for the structure of the oceanic pycnocline

PubMed

Gnanadesikan

1999-03-26

A simple theory for the large-scale oceanic circulation is developed, relating pycnocline depth, Northern Hemisphere sinking, and low-latitude upwelling to pycnocline diffusivity and Southern Ocean winds and eddies. The results show that Southern Ocean processes help maintain the global ocean structure and that pycnocline diffusion controls low-latitude upwelling.

Mantle upwellings and convective instabilities revealed by seismic tomography and helium isotope geochemistry beneath eastern Africa

NASA Astrophysics Data System (ADS)

Montagner, Jean-Paul; Marty, Bernard; Stutzmann, Eléonore; Sicilia, Déborah; Cara, Michel; Pik, Raphael; Lévêque, Jean-Jacques; Roult, Geneviève; Beucler, Eric; Debayle, Eric

2007-11-01

The relationship between intraplate volcanism and continental tectonics has been investigated for North and East Africa using a high resolution three-dimensional anisotropic tomographic model derived from seismic data of a French experiment ``Horn of Africa'' and existing broadband data. The joint inversion for seismic velocity and anisotropy of the upper 400 km of the mantle, and geochemical data reveals a complex interaction between mantle upwellings, and lithosphere. Two kinds of mantle upwellings can be distinguished: The first one, the Afar ``plume'' originates from deeper than 400 km and is characterized by enrichment in primordial 3He and 3He/4He ratios higher than those along mid-ocean ridges (MOR). The second one, associated with other Cenozoic volcanic provinces (Darfur, Tibesti, Hoggar, Cameroon), with 3He/4He ratios similar to, or lower than MOR, is a consequence of shallower upwelling. The presumed asthenospheric convective instabilities are oriented in an east-west direction, resulting from interaction between south-north asthenospheric mantle flow, main plume head and topography on the base of lithosphere.

Jurassic-Cretaceous paleogeography, paleoclimate and upwelling of the northern margin of Tethys

DOE Office of Scientific and Technical Information (OSTI.GOV)

Golonka, J.; Krobicki, M.

The Jurassic and Cretaceous global paleogeographic reconstructions illustrate the changing configuration of mountains, land, shallow seas and deep ocean basins. Active plate boundaries, such as spreading centers and subduction zones, are also shown. The Pliensbachian, Toarcian, Bathonian, Oxfordian-Kimmeridgian, Tithonian-Berriasian, Valanginian, Albian, Turonian and Maastrichtian maps were generated The outlines of paleogeography are used as input for paleoclimatic modeling. The PALEOCLIMATE program models global atmospheric pressure, derive paleo-wind directions and estimate the likelihood of coastal upwelling. The program is based on the paleoclimatic methods first developed by Judith Parrish, adopted by C. R. Scotese and modified by M. I. Ross. Themore » maps depict air pressure, wind directions, humid zones and areas favorable for upwelling conditions plotted on the paleogeographic background. Paleoclimate modeling suggests that prevailing Jurassic-Cretaceous wind directions in the northern Tethys area were from north-northeast. These winds were parallel to the axis of Czorsztyn ridge. The ridge was uplifted between Magura and Pieniny basins as the result of extension during Jurassic supercontinent breakup. The upwelling may have been induced at the southeastern margin of the ridge. The model is consistent with rock records, especially from the upper part of ammonitico rosso type Czorsztyn formation. Mass occurrence of Tithonian and Berriasian brachiopods was probably controlled by upwelling-induced trophic relationships which is resulted in the intense growth of benthic organisms on the ridge. This is additionally supported by the presence of phosphorites at localities which corresponded to the continental shelf/slope transition.« less

Meeting reproductive demands in a dynamic upwelling system: foraging strategies of a pursuit-diving seabird, the marbled murrelet

Treesearch

M. Zachariah Peery; Scott H. Newman; Curt D. Storlazzi; Steven R. Beissinger

2009-01-01

Seabirds maintain plasticity in their foraging behavior to cope with energy demands and foraging constraints that vary over the reproductive cycle, but behavioral studies comparing breeding and nonbreeding individuals are rare. Here we characterize how Marbled Murrelets (Brachyramphus marmoratus) adjust their foraging effort in response to changes...

Phytoplankton dynamics in relation to seasonal variability and upwelling and relaxation patterns at the mouth of Ria de Aveiro (West Iberian Margin) over a four-year period

PubMed Central

Calado, António José; Moita, Maria Teresa; Cunha, Marina R.

2017-01-01

From June 2004 to December 2007, samples were weekly collected at a fixed station located at the mouth of Ria de Aveiro (West Iberian Margin). We examined the seasonal and inter-annual fluctuations in composition and community structure of the phytoplankton in relation to the main environmental drivers and assessed the influence of the oceanographic regime, namely changes in frequency and intensity of upwelling events, over the dynamics of the phytoplankton assemblage. The samples were consistently handled and a final subset of 136 OTUs (taxa with relative abundance > 0.01%) was subsequently submitted to various multivariate analyses. The phytoplankton assemblage showed significant changes at all temporal scales but with an overriding importance of seasonality over longer- (inter-annual) or shorter-term fluctuations (upwelling-related). Sea-surface temperature, salinity and maximum upwelling index were retrieved as the main driver of seasonal change. Seasonal signal was most evident in the fluctuations of chlorophyll a concentration and in the high turnover from the winter to spring phytoplankton assemblage. The seasonal cycle of production and succession was disturbed by upwelling events known to disrupt thermal stratification and induce changes in the phytoplankton assemblage. Our results indicate that both the frequency and intensity of physical forcing were important drivers of such variability, but the outcome in terms of species composition was highly dependent on the available local pool of species and the timing of those events in relation to the seasonal cycle. We conclude that duration, frequency and intensity of upwelling events, which vary seasonally and inter-annually, are paramount for maintaining long-term phytoplankton diversity likely by allowing unstable coexistence and incorporating species turnover at different scales. Our results contribute to the understanding of the complex mechanisms of coastal phytoplankton dynamics in relation to changing physical forcing which is fundamental to improve predictability of future prospects under climate change. PMID:28472179

Phytoplankton dynamics in relation to seasonal variability and upwelling and relaxation patterns at the mouth of Ria de Aveiro (West Iberian Margin) over a four-year period.

PubMed

Vidal, Tânia; Calado, António José; Moita, Maria Teresa; Cunha, Marina R

2017-01-01

From June 2004 to December 2007, samples were weekly collected at a fixed station located at the mouth of Ria de Aveiro (West Iberian Margin). We examined the seasonal and inter-annual fluctuations in composition and community structure of the phytoplankton in relation to the main environmental drivers and assessed the influence of the oceanographic regime, namely changes in frequency and intensity of upwelling events, over the dynamics of the phytoplankton assemblage. The samples were consistently handled and a final subset of 136 OTUs (taxa with relative abundance > 0.01%) was subsequently submitted to various multivariate analyses. The phytoplankton assemblage showed significant changes at all temporal scales but with an overriding importance of seasonality over longer- (inter-annual) or shorter-term fluctuations (upwelling-related). Sea-surface temperature, salinity and maximum upwelling index were retrieved as the main driver of seasonal change. Seasonal signal was most evident in the fluctuations of chlorophyll a concentration and in the high turnover from the winter to spring phytoplankton assemblage. The seasonal cycle of production and succession was disturbed by upwelling events known to disrupt thermal stratification and induce changes in the phytoplankton assemblage. Our results indicate that both the frequency and intensity of physical forcing were important drivers of such variability, but the outcome in terms of species composition was highly dependent on the available local pool of species and the timing of those events in relation to the seasonal cycle. We conclude that duration, frequency and intensity of upwelling events, which vary seasonally and inter-annually, are paramount for maintaining long-term phytoplankton diversity likely by allowing unstable coexistence and incorporating species turnover at different scales. Our results contribute to the understanding of the complex mechanisms of coastal phytoplankton dynamics in relation to changing physical forcing which is fundamental to improve predictability of future prospects under climate change.

Wind-induced upwelling in the Kerguelen Plateau region

NASA Astrophysics Data System (ADS)

Gille, S. T.; Carranza, M. M.; Cambra, R.

2014-11-01

In contrast to most of the Southern Ocean, the Kerguelen Plateau supports an unusually strong spring chlorophyll (Chl a) bloom, likely because the euphotic zone in the region is supplied with higher iron concentrations. This study uses satellite wind, sea surface temperature (SST), and ocean color data to explore the impact of wind-driven processes on upwelling of cold (presumably iron-rich) water to the euphotic zone. Results show that, in the Kerguelen region, cold SSTs correlate with high wind speeds, implying that wind-mixing leads to enhanced vertical mixing. Cold SSTs also correlate with negative wind-stress curl, implying that Ekman pumping can further enhance upwelling. In the moderate to high eddy kinetic energy (EKE) regions surrounding Kerguelen, we find evidence of coupling between winds and SST gradients associated with mesoscale eddies, which can locally modulate the wind-stress curl. This coupling introduces persistent wind-stress curl patterns and Ekman pumping around these long-lived eddies, which may modulate the evolution of Chl a in the downstream plume far offshore. Close to the plateau, this eddy coupling breaks down. Kerguelen has a significant wind shadow on its downwind side, which changes position depending on the prevailing wind and which generates a wind-stress curl dipole that shifts location depending on wind direction. This leads to locally enhanced Ekman pumping for a few hundred kilometers downstream from the Kerguelen Plateau; Chl a values tend to be more elevated in places where wind-stress curl induces Ekman upwelling than in locations of downwelling, although the estimated upwelling rates are too small for this relationship to derive from direct effects on upward iron supply, and thus other processes, which remain to be determined, must also be involved in the establishment of these correlations. During the October and November (2011) KErguelen Ocean and Plateau compared Study (KEOPS-2) field program, wind conditions were fairly typical for the region, with enhanced Ekman upwelling expected to the north of the Kerguelen Islands.

Phosphorus cycling in the red tide incubator region of monterey bay in response to upwelling.

PubMed

Mackey, Katherine R M; Mioni, Cécile E; Ryan, John P; Paytan, Adina

2012-01-01

This study explores the cycling of phosphorus (P) in the euphotic zone following upwelling in northeastern Monterey Bay (the Red Tide Incubator region) of coastal California, with particular emphasis on how bacteria and phytoplankton that form harmful algal blooms mediate and respond to changes in P availability. In situ measurements of nutrient concentrations, phytoplankton community composition, and cell-specific alkaline phosphatase (AP) activity (determined via enzyme-labeled fluorescence assay) were measured during three cruises. Upwelling led to a 10-fold increase in dissolved inorganic (DIP) in surface waters, reaching ∼0.5 μmol L(-1). This DIP was drawn down rapidly as upwelling relaxed over a period of 1 week. Ratios of nitrate to DIP drawdown (∼5:1, calculated as the change in nitrate divided by the change in DIP) were lower than the Redfield ratio of 16:1, suggesting that luxury P uptake was occurring as phytoplankton bloomed. Dissolved organic (DOP) remained relatively constant (∼0.3 μmol L(-1)) before and immediately following upwelling, but doubled as upwelling relaxed, likely due to phytoplankton excretion and release during grazing. This transition from a relatively high DIP:DOP ratio to lower DIP:DOP ratio was accompanied by a decline in the abundance of diatoms, which had low AP activity, toward localized, spatially heterogeneous blooms of dinoflagellates in the genera Prorocentrum, Ceratium, Dinophysis, Alexandrium, and Scrippsiella that showed high AP activity regardless of ambient DIP levels. A nutrient addition incubation experiment showed that phytoplankton growth was primarily limited by nitrate, followed by DIP and DOP, suggesting that P regulates phytoplankton physiology and competition, but is not a limiting nutrient in this region. AP activity was observed in bacteria associated with lysed cell debris and aggregates of particulate organic material, where it may serve to facilitate P regeneration, as well as affixed to the surfaces of intact phytoplankton cells, possibly indicative of close, beneficial phytoplankton-bacteria interactions.

Phosphorus Cycling in the Red Tide Incubator Region of Monterey Bay in Response to Upwelling

PubMed Central

Mackey, Katherine R. M.; Mioni, Cécile E.; Ryan, John P.; Paytan, Adina

2012-01-01

This study explores the cycling of phosphorus (P) in the euphotic zone following upwelling in northeastern Monterey Bay (the Red Tide Incubator region) of coastal California, with particular emphasis on how bacteria and phytoplankton that form harmful algal blooms mediate and respond to changes in P availability. In situ measurements of nutrient concentrations, phytoplankton community composition, and cell-specific alkaline phosphatase (AP) activity (determined via enzyme-labeled fluorescence assay) were measured during three cruises. Upwelling led to a 10-fold increase in dissolved inorganic (DIP) in surface waters, reaching ∼0.5 μmol L−1. This DIP was drawn down rapidly as upwelling relaxed over a period of 1 week. Ratios of nitrate to DIP drawdown (∼5:1, calculated as the change in nitrate divided by the change in DIP) were lower than the Redfield ratio of 16:1, suggesting that luxury P uptake was occurring as phytoplankton bloomed. Dissolved organic (DOP) remained relatively constant (∼0.3 μmol L−1) before and immediately following upwelling, but doubled as upwelling relaxed, likely due to phytoplankton excretion and release during grazing. This transition from a relatively high DIP:DOP ratio to lower DIP:DOP ratio was accompanied by a decline in the abundance of diatoms, which had low AP activity, toward localized, spatially heterogeneous blooms of dinoflagellates in the genera Prorocentrum, Ceratium, Dinophysis, Alexandrium, and Scrippsiella that showed high AP activity regardless of ambient DIP levels. A nutrient addition incubation experiment showed that phytoplankton growth was primarily limited by nitrate, followed by DIP and DOP, suggesting that P regulates phytoplankton physiology and competition, but is not a limiting nutrient in this region. AP activity was observed in bacteria associated with lysed cell debris and aggregates of particulate organic material, where it may serve to facilitate P regeneration, as well as affixed to the surfaces of intact phytoplankton cells, possibly indicative of close, beneficial phytoplankton–bacteria interactions. PMID:22347222

Seasonal cycle of the mixed-layer heat and freshwater budget in the eastern tropical Atlantic

NASA Astrophysics Data System (ADS)

Rath, Willi; Dengler, Marcus; Lüdke, Jan; Schmidtko, Sunke; Schlundt, Michael; Brandt, Peter; Partners, Preface

2016-04-01

A new seasonal mixed-layer heat flux climatology is used to explore the mechanisms driving seasonal variability of sea surface temperature and salinity in the eastern tropical Atlantic (ETA) with a focus on the eastern boundary upwelling regions. Until recently, large areas at the continental margins of the ETA were not well covered by publically available hydrographic data hampering a detailed understanding of the involved processes. In a collaborative effort between African and European partners within the EU-funded PREFACE program, a new seasonal climatology for different components of the heat and freshwater budget was compiled for the ETA using all publically available hydrographic data sets and a large trove of previously not-publically available hydrographic measurements from the territorial waters of western African countries, either from national programs or from the FAO supported EAF-Nansen program. The publically available data includes hydrographic data from global data repositories including most recent ARGO floats and glider measurements. This data set was complemented by velocity data from surface drifter and ARGO floats to allow determining horizontal heat and freshwater advection. Monthly means of air-sea heat fluxes were derived from the TropFlux climatology while precipitation rates were derived from monthly mean fields of the Global Precipitation Climatology Project. Finally, microstructure data from individual measurement campaigns allow estimating diapycnal heat and salt fluxes for certain regions during specific months. A detailed analysis of the seasonal cycle of mixed-layer heat and freshwater balance in previously poorly covered regions in the eastern tropical Atlantic upwelling is presented. In both eastern boundary upwelling region, off Senegal/Mauritania and off Angola/Namibia, average net surface heat fluxes warm the mixed layer at a rate between 50 and 80 W/m2 with maxima in the respective summer seasons. Horizontal advection contributed to cooling of the mixed layer but a residual cooling term remains in both upwelling regions. A surprising result is that this residual is largest in the Angolan upwelling region, where upwelling-favourable winds are generally weaker than off Namibia and in the north-eastern upwelling region. The contributions of windstress-derived vertical advection and diapycnal heat and freshwater fluxes are discussed. In addition, the TropFlux climatology is evaluated against radiative and turbulent ocean-atmosphere heat and freshwater fluxes derived from ship-board observations.

Seasonal variation of the South Indian tropical gyre

NASA Astrophysics Data System (ADS)

Aguiar-González, Borja; Ponsoni, Leandro; Ridderinkhof, Herman; van Aken, Hendrik M.; de Ruijter, Will P. M.; Maas, Leo R. M.

2016-04-01

The South Indian tropical gyre receives and redistributes water masses from the Indonesian Throughflow (ITF), a source of Pacific Ocean water which represents the only low-latitude connector between the world oceans and, therefore, a key component in the global ocean circulation and climate system. We investigate the seasonal variation of the South Indian tropical gyre and its associated open-ocean upwelling system, known as the Seychelles-Chagos Thermocline Ridge (SCTR), based on satellite altimeter data (AVISO) and global atlases of temperature and salinity (CARS09), wind stress (SCOW) and wind-driven circulation. Two novel large-scale features governing the upper geostrophic circulation of the South Indian tropical gyre are revealed. First, the seasonal shrinkage of the ocean gyre. This occurs when the South Equatorial Countercurrent (SECC) recirculates before arrival to Sumatra from winter to spring, in apparent synchronization with the annual cycle of the ITF. Second, the open-ocean upwelling is found to vary following seasonality of the overlying geostrophic ocean gyre, a relationship that has not been previously shown for this region. An analysis of major forcing mechanisms suggests that the thermocline ridge results from the constructive interaction of basin-scale wind stress curl, local-scale wind stress forcing and remote forcing driven by Rossby waves of different periodicity: semiannual in the west, under the strong influence of monsoonal winds; and, annual in the east, where the southeasterlies prevail. One exception occurs during winter, when the well-known westward intensification of the upwelling core, the Seychelles Dome, is shown to be largely a response of the wind-driven circulation. Broadly speaking, the seasonal shrinkage of the ocean gyre (and the SCTR) is the one feature that differs most when the geostrophic circulation is compared to the wind-driven Sverdrup circulation. From late autumn to spring, the eastward SECC recirculates early in the east on feeding the westward South Equatorial Current, therefore closing the gyre before arrival to Sumatra. We find this recirculation longitude migrates over 20° and collocates with the westward advance of a zonal thermohaline front emerging from the encounter between (upwelled) Indian Equatorial Water and relatively warmer and fresher Indonesian Throughflow Water. We suggest this front, which we call the Indonesian Throughflow Front, plays an important role as forcing to the tropical gyre, generating southward geostrophic flows that contribute to the early recirculation of the SECC at longitudes more westward than predicted from the barotropic wind-driven circulation. Because our findings are based on time-averaged seasonal fields from 22 years of satellite altimeter data and from about 60 years of non-systematic sampling of ocean temperature and salinity data (CARS09), we stress the importance of further study on the possibility that interanual variability in the seasonal ITF may cause changes in the seasonal resizing of the ocean gyre and its associated upwelling ridge.

Narrowing of the Upwelling Branch of the Brewer-Dobson Circulation and Hadley Cell in Chemistry-Climate Model Simulations of the 21st Century

NASA Technical Reports Server (NTRS)

Li, Feng; Stolarski, Richard S.; Pawson, Steven; Newman, Paul A.; Waugh, Darryn

2010-01-01

Changes in the width of the upwelling branch of the Brewer-Dobson circulation and Hadley cell in the 21st Century are investigated using simulations from a coupled chemistry-climate model. In these model simulations the tropical upwelling region narrows in the troposphere and lower stratosphere. The narrowing of the Brewer-Dobson circulation is caused by an equatorward shift of Rossby wave critical latitudes and Eliassen-Palm flux convergence in the subtropical lower stratosphere. In the troposphere, the model projects an expansion of the Hadley cell's poleward boundary, but a narrowing of the Hadley rising branch. Model results suggest that the narrowing of the Hadley cell ascent is also eddy-driven.

Skylab investigation of the upwelling off the Northwest coast of Africa

NASA Technical Reports Server (NTRS)

Szekielda, K. H.; Suszkowski, D. J.; Tabor, P. S.

1975-01-01

The upwelling off the NW coast of Africa in the vicinity of Cape Blanc was studied in February - March 1974 from aircraft and in September 1973 from Skylab. The aircraft study was designed to determine the effectiveness of a differential radiometer in quantifying surface chlorophyll concentrations. Photographic images of the S190A Multispectral Camera and the S190B Earth Terrain Camera from Skylab were used to study distributional patterns of suspended material and to locate ocean color boundaries. The thermal channel of the S192 Multispectral Scanner was used to map sea-surface temperature distributions offshore of Cape Blanc. Correlating ocean color changes with temperature gradients is an effective method of qualitatively estimating biological productivity in the upwelling region off Africa.

Optimal Environmental Conditions and Anomalous Ecosystem Responses: Constraining Bottom-up Controls of Phytoplankton Biomass in the California Current System

PubMed Central

Jacox, Michael G.; Hazen, Elliott L.; Bograd, Steven J.

2016-01-01

In Eastern Boundary Current systems, wind-driven upwelling drives nutrient-rich water to the ocean surface, making these regions among the most productive on Earth. Regulation of productivity by changing wind and/or nutrient conditions can dramatically impact ecosystem functioning, though the mechanisms are not well understood beyond broad-scale relationships. Here, we explore bottom-up controls during the California Current System (CCS) upwelling season by quantifying the dependence of phytoplankton biomass (as indicated by satellite chlorophyll estimates) on two key environmental parameters: subsurface nitrate concentration and surface wind stress. In general, moderate winds and high nitrate concentrations yield maximal biomass near shore, while offshore biomass is positively correlated with subsurface nitrate concentration. However, due to nonlinear interactions between the influences of wind and nitrate, bottom-up control of phytoplankton cannot be described by either one alone, nor by a combined metric such as nitrate flux. We quantify optimal environmental conditions for phytoplankton, defined as the wind/nitrate space that maximizes chlorophyll concentration, and present a framework for evaluating ecosystem change relative to environmental drivers. The utility of this framework is demonstrated by (i) elucidating anomalous CCS responses in 1998–1999, 2002, and 2005, and (ii) providing a basis for assessing potential biological impacts of projected climate change. PMID:27278260

Secondary contact and asymmetrical gene flow in a cosmopolitan marine fish across the Benguela upwelling zone

PubMed Central

Reid, K; Hoareau, T B; Graves, J E; Potts, W M; dos Santos, S M R; Klopper, A W; Bloomer, P

2016-01-01

The combination of oceanographic barriers and habitat heterogeneity are known to reduce connectivity and leave specific genetic signatures in the demographic history of marine species. However, barriers to gene flow in the marine environment are almost never impermeable which inevitably allows secondary contact to occur. In this study, eight sampling sites (five along the South African coastline, one each in Angola, Senegal and Portugal) were chosen to examine the population genetic structure and phylogeographic history of the cosmopolitan bluefish (Pomatomus saltatrix), distributed across a large South-east Atlantic upwelling zone. Molecular analyses were applied to mtDNA cytochrome b, intron AM2B1 and 15 microsatellite loci. We detected uncharacteristically high genetic differentiation (FST 0.15–0.20; P<0.001) between the fish sampled from South Africa and the other sites, strongly influenced by five outlier microsatellite loci located in conserved intergenic regions. In addition, differentiation among the remaining East Atlantic sites was detected, although mtDNA indicated past isolation with subsequent secondary contact between these East Atlantic populations. We further identified secondary contact, with unidirectional gene flow from South Africa to Angola. The directional contact is likely explained by a combination of the northward flowing offshore current and endogenous incompatibilities restricting integration of certain regions of the genome and limiting gene flow to the south. The results confirm that the dynamic system associated with the Benguela current upwelling zone influences species distributions and population processes in the South-east Atlantic. PMID:27436525

Secondary contact and asymmetrical gene flow in a cosmopolitan marine fish across the Benguela upwelling zone.

PubMed

Reid, K; Hoareau, T B; Graves, J E; Potts, W M; Dos Santos, S M R; Klopper, A W; Bloomer, P

2016-11-01

The combination of oceanographic barriers and habitat heterogeneity are known to reduce connectivity and leave specific genetic signatures in the demographic history of marine species. However, barriers to gene flow in the marine environment are almost never impermeable which inevitably allows secondary contact to occur. In this study, eight sampling sites (five along the South African coastline, one each in Angola, Senegal and Portugal) were chosen to examine the population genetic structure and phylogeographic history of the cosmopolitan bluefish (Pomatomus saltatrix), distributed across a large South-east Atlantic upwelling zone. Molecular analyses were applied to mtDNA cytochrome b, intron AM2B1 and 15 microsatellite loci. We detected uncharacteristically high genetic differentiation (F ST 0.15-0.20; P<0.001) between the fish sampled from South Africa and the other sites, strongly influenced by five outlier microsatellite loci located in conserved intergenic regions. In addition, differentiation among the remaining East Atlantic sites was detected, although mtDNA indicated past isolation with subsequent secondary contact between these East Atlantic populations. We further identified secondary contact, with unidirectional gene flow from South Africa to Angola. The directional contact is likely explained by a combination of the northward flowing offshore current and endogenous incompatibilities restricting integration of certain regions of the genome and limiting gene flow to the south. The results confirm that the dynamic system associated with the Benguela current upwelling zone influences species distributions and population processes in the South-east Atlantic.

Characterizing energy budget variability at a Sahelian site: a test of NWP model behaviour

NASA Astrophysics Data System (ADS)

Mackie, Anna; Palmer, Paul I.; Brindley, Helen

2017-12-01

We use observations of surface and top-of-the-atmosphere (TOA) broadband radiation fluxes determined from the Atmospheric Radiation Measurement programme mobile facility, the Geostationary Earth Radiation Budget (GERB) and Spinning Enhanced Visible and Infrared Imager (SEVIRI) instruments and a range of meteorological variables at a site in the Sahel to test the ability of the ECMWF Integrated Forecasting System cycle 43r1 to describe energy budget variability. The model has daily average biases of -12 and 18 W m-2 for outgoing longwave and reflected shortwave TOA radiation fluxes, respectively. At the surface, the daily average bias is 12(13) W m-2 for the longwave downwelling (upwelling) radiation flux and -21(-13) W m-2 for the shortwave downwelling (upwelling) radiation flux. Using multivariate linear models of observation-model differences, we attribute radiation flux discrepancies to physical processes, and link surface and TOA fluxes. We find that model biases in surface radiation fluxes are mainly due to a low bias in ice water path (IWP), poor description of surface albedo and model-observation differences in surface temperature. We also attribute observed discrepancies in the radiation fluxes, particularly during the dry season, to the misrepresentation of aerosol fields in the model from use of a climatology instead of a dynamic approach. At the TOA, the low IWP impacts the amount of reflected shortwave radiation while biases in outgoing longwave radiation are additionally coupled to discrepancies in the surface upwelling longwave flux and atmospheric humidity.

Comparing Derived and Actual Upwelling Longwave Measurements at the CERES Ocean Validation Experiment (COVE)

NASA Astrophysics Data System (ADS)

Fabbri, B. E.; Schuster, G. L.; Denn, F. M.; Arduini, R. F.; Madigan, J. J.

2017-12-01

One of the parameters measured from the Clouds and the Earth's Radiant Energy System (CERES) satellite is Earth emitted or longwave (LW) radiation. One validation site to compare this quantity is the CERES Ocean Validation Experiment (COVE), located at Chesapeake Light Station, approximately 25 kilometers east of Virginia Beach, Virginia (coordinates: 36.90N, 75.71W). However, the upwelling measurement is complicated due to the Light Station tower being in the LW instruments field of view. A negative outcome of the tower being in the field of view is a tower radiating effect, especially noticeable on clear, sunny days. During these days, the tower tends to heat up and radiate extra heat energy that is measured by the LW instrument. To understand the extent of the problem, we derive upwelling longwave measurements at the surface using sea surface temperature, air temperature, and dewpoint to compare with the actual longwave measurement made with an Eppley Laboratory pyrgeometer. The data used in this study is over a four-year period (2009-2012). One result using only nighttime data (range: 15.0 =< sa <= 55.0) shows the relative error between actual versus derived being low. The resultant statistics produced a mean, median, standard deviation and standard error to be -0.378, -0.14, 1.906 and 0.005 respectively. This low error is not too surprising since there is no solar insolation creating the tower radiating effect. Other results comparing the diurnal scope are analyzed and presented.

Investigating Eastern Equatorial Pacific Export Production and Carbonate Dissolution with XRF Core Scanning at ODP Site 846 Over the Last 5 Million Years

NASA Astrophysics Data System (ADS)

Jones, C.; Robinson, R. S.

2015-12-01

Coastal and equatorial upwelling in the Eastern Equatorial Pacific (EEP) are responsible for about 10% of the ocean's total production. The deep, cold, nutrient-rich waters supplied by upwelling originate in high latitudes, linking changes at high latitudes to the tropics. The Pliocene/Pleistocene transition which started around 2.7-3 million years ago (Ma) marked a period of higher variability in biological production and sea surface temperatures dominated by glacial/interglacial cycles. In addition, secular changes in the development of both Walker and Hadley cells appear to have impacted the strength of equatorial upwelling. However, the large positive production excursions, such as those found from 1.6 to 2.2 Ma, remain only moderately well characterized and both changes in high latitude nutrient supply and regional upwelling strength are implicated. ODP Site 846 is located in the heart of the EEP upwelling cold tongue and has ideal characteristics for examining these links and excursions. We present high-resolution (~0.5 ky) X-Ray Fluorescence (XRF) chemical profiles of Ca, Si, Ba, Mn, Fe, Al, and Ti, as well as a total nitrogen (TN%) record for the last 5 million years from ODP Site 846. We use these high resolution profiles in conjunction with other regional data to assess biogeochemical processes in the EEP over the last 5 million years. CaCO3 and SiO2 are the two dominant biogenic components and account for more than 95% of the sediment. BaSO4 and the discrete TN% measurements record total productivity. MnO and Fe2O3 are redox-sensitive species and are particularly suited to tracing dissolution related to excess bottom-water metabolic processes driven by high export production at the high-alkalinity Site 846. Al2O3 and TiO2 are tracers of terrigenous input. A transition between low amplitude and high amplitude carbonate cycles occurs at 2.8 Ma, coinciding with the Pliocene/Pleistocene transition to higher amplitude glacial cycles. Notable excursions from the baseline high carbonate system occur between 3.8 and 4.2 Ma, between 1.6 and 2.2 Ma, at 0.75 Ma, and within the last 0.1 Ma. These excursions are explored, and causes include heavy contributions from productivity-driven dissolution, some extended instances of CCD-driven dissolution and shifts in overlying productivity towards diatoms.

Development of a precision multimodal surgical navigation system for lung robotic segmentectomy

PubMed Central

Soldea, Valentin; Lachkar, Samy; Rinieri, Philippe; Sarsam, Mathieu; Bottet, Benjamin; Peillon, Christophe

2018-01-01

Minimally invasive sublobar anatomical resection is becoming more and more popular to manage early lung lesions. Robotic-assisted thoracic surgery (RATS) is unique in comparison with other minimally invasive techniques. Indeed, RATS is able to better integrate multiple streams of information including advanced imaging techniques, in an immersive experience at the level of the robotic console. Our aim was to describe three-dimensional (3D) imaging throughout the surgical procedure from preoperative planning to intraoperative assistance and complementary investigations such as radial endobronchial ultrasound (R-EBUS) and virtual bronchoscopy for pleural dye marking. All cases were operated using the DaVinci SystemTM. Modelisation was provided by Visible Patient™ (Strasbourg, France). Image integration in the operative field was achieved using the Tile Pro multi display input of the DaVinci console. Our experience was based on 114 robotic segmentectomies performed between January 2012 and October 2017. The clinical value of 3D imaging integration was evaluated in 2014 in a pilot study. Progressively, we have reached the conclusion that the use of such an anatomic model improves the safety and reliability of procedures. The multimodal system including 3D imaging has been used in more than 40 patients so far and demonstrated a perfect operative anatomic accuracy. Currently, we are developing an original virtual reality experience by exploring 3D imaging models at the robotic console level. The act of operating is being transformed and the surgeon now oversees a complex system that improves decision making. PMID:29785294

Development of a precision multimodal surgical navigation system for lung robotic segmentectomy.

PubMed

Baste, Jean Marc; Soldea, Valentin; Lachkar, Samy; Rinieri, Philippe; Sarsam, Mathieu; Bottet, Benjamin; Peillon, Christophe

2018-04-01

Minimally invasive sublobar anatomical resection is becoming more and more popular to manage early lung lesions. Robotic-assisted thoracic surgery (RATS) is unique in comparison with other minimally invasive techniques. Indeed, RATS is able to better integrate multiple streams of information including advanced imaging techniques, in an immersive experience at the level of the robotic console. Our aim was to describe three-dimensional (3D) imaging throughout the surgical procedure from preoperative planning to intraoperative assistance and complementary investigations such as radial endobronchial ultrasound (R-EBUS) and virtual bronchoscopy for pleural dye marking. All cases were operated using the DaVinci System TM . Modelisation was provided by Visible Patient™ (Strasbourg, France). Image integration in the operative field was achieved using the Tile Pro multi display input of the DaVinci console. Our experience was based on 114 robotic segmentectomies performed between January 2012 and October 2017. The clinical value of 3D imaging integration was evaluated in 2014 in a pilot study. Progressively, we have reached the conclusion that the use of such an anatomic model improves the safety and reliability of procedures. The multimodal system including 3D imaging has been used in more than 40 patients so far and demonstrated a perfect operative anatomic accuracy. Currently, we are developing an original virtual reality experience by exploring 3D imaging models at the robotic console level. The act of operating is being transformed and the surgeon now oversees a complex system that improves decision making.

Vibrio diversity and dynamics in the Monterey Bay upwelling region

PubMed Central

Mansergh, Sarah; Zehr, Jonathan P.

2013-01-01

The Vibrionaceae (Vibrio) are a ubiquitous group of metabolically flexible marine bacteria that play important roles in biogeochemical cycling in the ocean. Despite this versatility, little is known about Vibrio diversity and abundances in upwelling regions. The seasonal dynamics of Vibrio populations was examined by analysis of 16S rRNA genes in Monterey Bay (MB), California from April 2006–April 2008 at two long term monitoring stations, C1 and M2. Vibrio phylotypes within MB were diverse, with subpopulations clustering with several different cultured representatives including Allivibrio spp., Vibrio penaecida, and Vibrio splendidus as well as with many unidentified marine environmental bacterial 16S rRNA gene sequences. Total Vibrio population abundances, as well as abundances of a Vibrio sp. subpopulation (MBAY Vib7) and an Allivibrio sp. subpopulation (MBAY Vib4) were examined in the context of environmental parameters from mooring station and CTD cast data. Total Vibrio populations showed some seasonal variability but greater variability was observed within the two subpopulations. MBAY Vib4 was negatively associated with MB upwelling indices and positively correlated with oceanic season conditions, when upwelling winds relax and warmer surface waters are present in MB. MBAY Vib7 was also negatively associated with upwelling indices and represented a deeper Vibrio sp. population. Correlation patterns suggest that larger oceanographic conditions affect the dynamics of the populations in MB, rather than specific environmental factors. This study is the first to target and describe the diversity and dynamics of these natural populations in MB and demonstrates that these populations shift seasonally within the region. PMID:24575086

Monsoonal upwelling in the western Arabian Sea since the middle Miocene

NASA Astrophysics Data System (ADS)

Zhuang, G.; Zhang, Y.

2017-12-01

The Asian monsoon has long been argued to be a product of the Himalaya-Tibetan Plateau, and simulation experiments have confirmed the key role of the Himalaya-Tibetan Plateau in transforming regional atmospheric and oceanic circulations. However, temporal constraints on the strengthening of the Asian monsoon inferred from foraminifer isotopic and faunal data and terrestrial climatic and ecological records are inconsistent with each other, which has obscured the tectonic-climatic linkage. In particular, discriminating the post-middle Miocene global cooling from the monsoon upwelling cooling is critical, but poorly understood due to the lack of adequate constraints for monsoonal upwelling. Here we present new middle to late Miocene biomarker-based reconstructions of sea-surface temperature (SST) for the western Arabian Sea. Our new SSTs capture a long-term ocean cooling since ca. 14.8 Ma and a major drop in SST in the period 11-10 Ma after which the SSTs reached similar values as the Holocene. The new SST record is consistent with planktonic foraminifer, siliceous biota, and geochemical tracer studies, suggestive of ocean cooling and high productivity associated with monsoonal upwelling. The 11-10 Ma ocean cooling is not clearly expressed in other tropical oceans, indicating that the ocean cooling in the western Arabian Sea is not a simple reflection of global cooling. We interpret the 11-10 Ma ocean cooling as representing the establishment of monsoonal upwelling in the western Arabian Sea, triggered by strong cyclonic activities as a result of the Neogene outward expansion of the Himalaya-Tibetan Plateau.

Climate change and decadal shifts in the phenology of larval fishes in the California Current ecosystem

PubMed Central

Asch, Rebecca G.

2015-01-01

Climate change has prompted an earlier arrival of spring in numerous ecosystems. It is uncertain whether such changes are occurring in Eastern Boundary Current Upwelling ecosystems, because these regions are subject to natural decadal climate variability, and regional climate models predict seasonal delays in upwelling. To answer this question, the phenology of 43 species of larval fishes was investigated between 1951 and 2008 off southern California. Ordination of the fish community showed earlier phenological progression in more recent years. Thirty-nine percent of seasonal peaks in larval abundance occurred earlier in the year, whereas 18% were delayed. The species whose phenology became earlier were characterized by an offshore, pelagic distribution, whereas species with delayed phenology were more likely to reside in coastal, demersal habitats. Phenological changes were more closely associated with a trend toward earlier warming of surface waters rather than decadal climate cycles, such as the Pacific Decadal Oscillation and North Pacific Gyre Oscillation. Species with long-term advances and delays in phenology reacted similarly to warming at the interannual time scale as demonstrated by responses to the El Niño Southern Oscillation. The trend toward earlier spawning was correlated with changes in sea surface temperature (SST) and mesozooplankton displacement volume, but not coastal upwelling. SST and upwelling were correlated with delays in fish phenology. For species with 20th century advances in phenology, future projections indicate that current trends will continue unabated. The fate of species with delayed phenology is less clear due to differences between Intergovernmental Panel on Climate Change models in projected upwelling trends. PMID:26159416

Controlling factors of the seasonal variability of productivity in the southern Humboldt Current System (30-40°S): A biophysical modeling approach

NASA Astrophysics Data System (ADS)

Vergara, Odette A.; Echevín, Vincent; Sepúlveda, Héctor Hito; Quiñones, Renato A.

2017-09-01

The spatial and seasonal variability of nutrients and chlorophyll in the southern Humboldt Current System were assessed using a high-resolution regional ocean circulation model (ROMS) coupled to a biogeochemical model (Pelagic-Interactions Scheme for carbon and Ecosystem Studies; PISCES). The simulated nutrients and chlorophyll fields were validated using satellite and in situ observations at a continental shelf time-series station. The annual cycles of modeled chlorophyll and nutrients were consistent with the highest values observed in spring and summer, which is in agreement with enhanced upwelling observations. Co-limitation of phytoplankton growth by nutrients and light was analyzed for diatoms, the dominant phytoplankton group in the simulations. The results showed that co-limitation, near the coast, was governed in autumn and winter by light, and by silicate in spring and summer, whereas other nutrients were limiting offshore between January and April. Nutrient transport in the surface layer was analyzed. Vertical advection reflected areas with higher coastal upwelling, and was partly offset by horizontal processes related to eddy-induced transport from the nearshore to the open ocean. Vertical mixing was shown to play a key role in replenishing the surface layer with nutrients.

Multifarious anchovy and sardine regimes in the Humboldt Current System during the last 150 years.

PubMed

Salvatteci, Renato; Field, David; Gutiérrez, Dimitri; Baumgartner, Tim; Ferreira, Vicente; Ortlieb, Luc; Sifeddine, Abdel; Grados, Daniel; Bertrand, Arnaud

2018-03-01

The Humboldt Current System (HCS) has the highest production of forage fish in the world, although it is highly variable and the future of the primary component, anchovy, is uncertain in the context of global warming. Paradigms based on late 20th century observations suggest that large-scale forcing controls decadal-scale fluctuations of anchovy and sardine across different boundary currents of the Pacific. We develop records of anchovy and sardine fluctuations since 1860 AD using fish scales from multiple sites containing laminated sediments and compare them with Pacific basin-scale and regional indices of ocean climate variability. Our records reveal two main anchovy and sardine phases with a timescale that is not consistent with previously proposed periodicities. Rather, the regime shifts in the HCS are related to 3D habitat changes driven by changes in upwelling intensity from both regional and large-scale forcing. Moreover, we show that a long-term increase in coastal upwelling translates via a bottom-up mechanism to top predators suggesting that the warming climate, at least up to the start of the 21st century, was favorable for fishery productivity in the HCS. © 2017 John Wiley & Sons Ltd.

Sub-regional ecosystem variability in the Canary Current upwelling

NASA Astrophysics Data System (ADS)

Arístegui, Javier; Barton, Eric D.; Álvarez-Salgado, Xosé A.; Santos, A. Miguel P.; Figueiras, Francisco G.; Kifani, Souad; Hernández-León, Santiago; Mason, Evan; Machú, Eric; Demarcq, Hervé

2009-12-01

The Canary Current upwelling ecosystem (CanC) constitutes one of the four main eastern boundary upwelling ecosystems (EBUEs) of the world, thus hosting high productivity and fisheries. Recent observations indicate that the CanC region as a whole has been experiencing a progressive warming and a decrease in productivity over the last decades. This overall trend is however not directly reflected in the fisheries of the region. Here we update recent results and previous reviews on the CanC, covering aspects from the physical environment to fish populations and fisheries on a range of time scales. We approach these topics, when possible, through a comparative exploration of the biogeographical characteristics of different sub-regions comprising this ecosystem. This review shows that variability in coastline configuration, shelf width, coastal upwelling, nutrient fertilization, productivity, or retentive vs. dispersive physical mechanisms, among other factors, may help explain sub-regional differences in fish distributions and abundances in the CanC. Nevertheless, the lack of systematic information on the regional variability of physical and biological processes hampers an integrated understanding of the relative contribution of natural vs. human-induced variability in the populations of at least small-pelagic fishes and their associated fisheries.

Mantle Upwellings Below the Ibero-Maghrebian Region with a Common Deep Source from P Travel-time Tomography

NASA Astrophysics Data System (ADS)

Civiero, C.; Custodio, S.; Silveira, G. M.; Rawlinson, N.; Arroucau, P.

2017-12-01

The processes responsible for the geodynamical evolution of the Ibero-Maghrebian domain are still enigmatic. Several geophysical studies have improved our understanding of the region, but no single model has been accepted yet. This study takes advantage of the dense station networks deployed from France in the north to Canary Islands and Morocco in the south to provide a new high-resolution P-wave velocity model of the structure of the upper-mantle and top of the lower mantle. These images show subvertical small-scale upwellings below Atlas Range, Canary Islands and Central Iberia that seem to cross the transition zone. The results, together with geochemical evidence and a comparison with previous global tomographic models, reveal the ponding or flow of deep-plume material beneath the transition zone, which seems to feed upper-mantle "secondary" pulses. In the upper mantle the plumes, in conjunction with the subduction-related upwellings, allow the hot mantle to rise in the surrounding zones. During its rising, the mantle interacts with horizontal SW slab-driven flow which skirts the Alboran slab and connects with the mantle upwelling below Massif Central through the Valencia Trough rift.

On vertical advection truncation errors in terrain-following numerical models: Comparison to a laboratory model for upwelling over submarine canyons

NASA Astrophysics Data System (ADS)

Allen, S. E.; Dinniman, M. S.; Klinck, J. M.; Gorby, D. D.; Hewett, A. J.; Hickey, B. M.

2003-01-01

Submarine canyons which indent the continental shelf are frequently regions of steep (up to 45°), three-dimensional topography. Recent observations have delineated the flow over several submarine canyons during 2-4 day long upwelling episodes. Thus upwelling episodes over submarine canyons provide an excellent flow regime for evaluating numerical and physical models. Here we compare a physical and numerical model simulation of an upwelling event over a simplified submarine canyon. The numerical model being evaluated is a version of the S-Coordinate Rutgers University Model (SCRUM). Careful matching between the models is necessary for a stringent comparison. Results show a poor comparison for the homogeneous case due to nonhydrostatic effects in the laboratory model. Results for the stratified case are better but show a systematic difference between the numerical results and laboratory results. This difference is shown not to be due to nonhydrostatic effects. Rather, the difference is due to truncation errors in the calculation of the vertical advection of density in the numerical model. The calculation is inaccurate due to the terrain-following coordinates combined with a strong vertical gradient in density, vertical shear in the horizontal velocity and topography with strong curvature.

Record of massive upwellings from the Pacific large low shear velocity province

NASA Astrophysics Data System (ADS)

Madrigal, Pilar; Gazel, Esteban; Flores, Kennet E.; Bizimis, Michael; Jicha, Brian

2016-11-01

Large igneous provinces, as the surface expression of deep mantle processes, play a key role in the evolution of the planet. Here we analyse the geochemical record and timing of the Pacific Ocean Large Igneous Provinces and preserved accreted terranes to reconstruct the history of pulses of mantle plume upwellings and their relation with a deep-rooted source like the Pacific large low-shear velocity Province during the Mid-Jurassic to Upper Cretaceous. Petrological modelling and geochemical data suggest the need of interaction between these deep-rooted upwellings and mid-ocean ridges in pulses separated by ~10-20 Ma, to generate the massive volumes of melt preserved today as oceanic plateaus. These pulses impacted the marine biota resulting in episodes of anoxia and mass extinctions shortly after their eruption.

Coastal warming and wind-driven upwelling: A global analysis.

PubMed

Varela, Rubén; Lima, Fernando P; Seabra, Rui; Meneghesso, Claudia; Gómez-Gesteira, Moncho

2018-10-15

Long-term sea surface temperature (SST) warming trends are far from being homogeneous, especially when coastal and ocean locations are compared. Using data from NOAA's AVHRR OISST, we have analyzed sea surface temperature trends over the period 1982-2015 at around 3500 worldwide coastal points and their oceanic counterparts with a spatial resolution of 0.25 arc-degrees. Significant warming was observed at most locations although with important differences between oceanic and coastal points. This is especially patent for upwelling regions, where 92% of the coastal locations showed lower warming trends than at neighboring ocean locations. This result strongly suggests that upwelling has the potential to buffer the effects of global warming nearshore, with wide oceanographic, climatic, and biogeographic implications. Copyright © 2018 Elsevier B.V. All rights reserved.

A coupled ice-ocean model of ice breakup and banding in the marginal ice zone

NASA Technical Reports Server (NTRS)

Smedstad, O. M.; Roed, L. P.

1985-01-01

A coupled ice-ocean numerical model for the marginal ice zone is considered. The model consists of a nonlinear sea ice model and a two-layer (reduced gravity) ocean model. The dependence of the upwelling response on wind stress direction is discussed. The results confirm earlier analytical work. It is shown that there exist directions for which there is no upwelling, while other directions give maximum upwelling in terms of the volume of uplifted water. The ice and ocean is coupled directly through the stress at the ice-ocean interface. An interesting consequence of the coupling is found in cases when the ice edge is almost stationary. In these cases the ice tends to break up a few tenths of kilometers inside of the ice edge.

Evaluation of spatial, radiometric and spectral thematic mapper performance for coastal studies

NASA Technical Reports Server (NTRS)

Klemas, V. (Principal Investigator)

1983-01-01

An area along the southeastern shore of the Chesapeake Bay was subsetted from TM imagery. The subsetted image was then enhanced and classified using an ERDAS 400 system. Results obtained were compared with a chart showing the distribution of both Zolsters marina and Rupplia martime in the Vaucluse Shores and which supports a large community of SAV. Radiative transfer models describing the irradiance reflectance of a water column containing SAV are being refined. Radiative transfer theory was used to model upwelling radiance for an orbiting sensor viewing an estuarine environment. Upwelling radiance was calculated for a clear maritime atmosphere, an optically shallow estuary of either clear or turbid water, and one of three bottom types: vegetation, sand, or mud using TM bands 1, 2, and 3 and MSS bands 4 and 5. A spectral quality index was defined similar to the equation for apparent contrast and used to evaluate the relative effectiveness of TM and MSS bands in detecting submerged vegetation.

The Indonesian Throughflow: Oceanographic responses to Holocene changes in the mean Pacific state

NASA Astrophysics Data System (ADS)

Jacobel, A. W.; Oppo, D.; Eglinton, T. I.; Gibbons, F. T.; Montlucon, D.; Rosenthal, Y.; Linsley, B. K.

2009-12-01

The Indonesian Throughflow (ITF), which transfers upper ocean waters from the Pacific to the Indian Ocean, plays an essential role in global ocean circulation and tropical climate regulation. The flow and mixing regimes of the ITF are affected by changes in temperature, winds and upwelling caused by the Asian Monsoon/Intertropical Convergence Zone (AM/ITCZ) and interannual variations in El Niño (EN). Because the ITF is located in the Western Pacific Warm Pool, an area from which the atmosphere derives a large portion of its heat and water budget, changes in the ITF have the potential to perturb atmospheric circulation globally. Despite the importance of this region to global climate, changes in the ocean-atmosphere climate phenomenon affecting the ITF are still poorly understood. Our study used organic geochemical proxies for upwelling in the Makassar Strait to investigate Holocene oceanographic changes in the ITF in response to EN and the AM/ITCZ. A core-top biomarker survey was performed on multi-core samples from the Makassar Strait and surrounding areas. Concentrations of cholesterol (an indicator of integrated primary productivity) were determined by Gas Chromatography-Mass Spectrometry and were then compared with maps of regional July-August SST and determined to accurately reflect regional upwelling. Based on the findings of the core-top survey, a down-core biomarker record was generated from core BJ8-03-70 GGC taken from the West Sulawesi Margin in the Eastern Makassar Strait, an area that experiences seasonal upwelling associated with the boreal summer Asian monsoon. Cholesterol data show a trend towards increasing concentrations (upwelling or thermocline shoaling) in the late Holocene with a considerable increase approximately 6,000 years before present. Additionally, upwelling intensity appears to show more centennial-millennial variability during the late Holocene. Evidence that the summer monsoon has decreased in strength over the course of the Holocene (e.g. Wang et al., 2005) suggests that the increase in cholesterol is not a response to an increase in monsoon-driven upwelling. Because a shallower thermocline is associated with weak trade winds (El Niño-like conditions in the modern ocean), we interpret these results to represent a mid Holocene transition to a more El Niño-like mean Pacific state. This interpretation is consistent with previous evidence (Moy et al., 2002 and Conroy et al., 2008, yet the timing and reason for this transition is not well constrained. Further work should seek to develop a higher-resolution, multi-proxy dataset to explore and explain this change.

Trace Element Geochemistry as a Tool for the Reconstruction of Upwelling Patterns at 12oS off Peru since the Last Glacial Maximum (LGM)

NASA Astrophysics Data System (ADS)

Boening, P.; Brumsack, H.; Wolf, A.

2002-05-01

Laminated sediments (core 106KL), recovered during R/V Sonne cruise 147 from the Peruvian upper slope mud lens at 12oS, were analyzed for bulk parameters (TOC, TIC, TS) and opal as well as major and trace element composition by XRF and ICP-MS in 5 cm intervals. The composition of the terrigenous-detrital sediment fraction is comparable to average shale. The sediments exhibit slight increases in biogenic silica (diatoms) and carbonate contents (foraminifera) in varying layers. The experimentally determined opal contents correlate well with Si/Al ratios. High TOC and P contents are due to enhanced primary productivity, high sedimentation rates and corresponding organic matter preservation under a strong OMZ. We distinguish between three different groups of elements: 1.) trace elements involved in bio-cycling (e.g. Cd, Ag, Ni, Cu) are highly enriched in the sediments due to their association with plankton, high sedimentation rates (preventing remobilization from the sediments) and fixation as sulfides. 2.) redox-sensitive elements (e.g. Re, Mo) are significantly enriched probably due to reduction and precipitation under suboxic/anoxic conditions. Diffusion of these elements from the water column into sub/anoxic sediments seems to be the controlling factor, besides sulfide precipitation. An average Re/Mo ratio of 1.3 indicates anoxic sedimentary conditions. Most trace elements correlate well with the TOC content presumably documenting productivity events. 3.) Al, Zr and Y are well correlated, presumably representing sporadic high-energy fluvial input from the continent or enhanced current velocities. The three element groups were used to reconstruct the upwelling patterns off Lima since the LGM: TOC content and Al-normalized trace element patterns from the bio/redox-sensitive fractions represent the signal from the water column, whereas Al, Y and Zr reflect the terrigenous input. During the LGM (about 17 ky BP) the site was hardly affected by upwelling as the upwelling cell was located more basinward. As the sea level rose during the Late Glacial (17-10 ky BP) the upwelling cell shifted towards the coast. The Early Holocene (10-5 ky BP) is not documented likely because strong currents (presumably the Peru counter current) eroded the slope. In the Late Holocene the upwelling cell was established at the site. However, a higher terrrigenous proportion and lower input from the water column suggest a basinward shifting of the upwelling cell during the Second Neoglacial (2000-2700 BP). Stronger Element/Al and TOC variabilities indicate the influence of El Nino during the Late Holocene.

Variability of temperature and chlorophyll of the Iberian Peninsula near costal ecosystem during an upwelling event for the present climate and a future climate scenario

NASA Astrophysics Data System (ADS)

Lopes, José Fortes; Ferreira, Juan A.; Cardoso, Ana Cristina; Rocha, Alfredo C.

2014-01-01

Understanding the importance and the implication of the climate changes on coastal areas may be one of the major issues for this and next centuries. Climate changes may, indeed, impact the nearshore marine ecosystem, as coastal areas are very sensitive to the strength and the variability of the meteorological forcings. The main purpose of this work is to study temperature and phytoplankton distributions along the Portuguese near coastal zone during upwelling events in the present climate conditions and in a future climate scenario. The SRES-A2 IPCC scenario has been considered. We have used a three-dimensional model for coastal and shelf seas, including the following sub-models: hydrodynamical/physical, biological, sediment and contaminant. The forcings are provided by the interactions at the air-sea, considering the wind intensity and direction with the help of the WRF model (Weather Research and Forecast Model) and the coupled atmosphere-ocean model ECHAM5/MPI-OM. Results show that, for the future climate scenario, there is a reinforcement of the southward wind. The responses of the coastal ecosystem corresponds to the reinforcement of both, the southward (up to 10 cm/s) and the westward (up to 6 cm/s) induced upwelling currents. This, in turn generates an enlargement of the near coast upwelled cold layer, extending up to 60 km, as well as the rise of the warm layer temperature (up to 2.0 °C) and the spreading of the phytoplankton offshore. Significant changes in both the Chl-a vertical and the horizontal distribution patterns have been observed, as the nutrient supply to the upper layers depends on the strength of the upwelling, the bottom topography and orography of the coastal. These results confirm that changes in the strength and eventually the frequency of the upwelling favourable wind impact the phytoplankton distribution, which can have significant effect in the distribution and population of the upper level of the trophic chain of the coastal ecosystem.

Surface ocean carbon isotope anomalies on glacial terminations: An alternative view

NASA Astrophysics Data System (ADS)

Lund, D. C.; Cote, M.; Schmittner, A.

2016-12-01

Late Pleistocene glacial terminations are characterized by surface ocean carbon isotope minima on a global scale. During the last deglaciation (i.e. Termination 1), planktonic foraminiferal δ13C anomalies occurred in the Atlantic, Indian, Pacific, and Southern Oceans. Despite the apparently ubiquitous nature of δ13C anomalies on glacial terminations, their cause remains a matter of ongoing debate. The prevailing view is that isotopically light carbon from the abyss was upwelled in the Southern Ocean, resulting in outgassing of 13C-depleted carbon to the atmosphere and its advection to lower latitudes via mode and intermediate waters (Spero and Lea, 2002). Alternatively, carbon isotope minima may be driven by weakening of the biological pump related to circulation-driven changes in the oceanic preformed nutrient budget (Schmittner and Lund, 2015). Here we assess the deep upwelling and biological pump hypotheses using a new compilation of 70 globally-distributed planktonic δ13C records from the published literature. We find that 1) the mean deglacial δ13C anomaly is similar in all ocean basins, 2) the eastern tropical Pacific yields smaller mean δ13C anomalies than the western tropical Pacific, and 3) δ13C anomalies in the Southern Ocean decrease with increasing latitude. Our results are generally inconsistent with the deep upwelling hypothesis, which predicts that the δ13C signal should be largest in the Southern Ocean and upwelling regions. Instead, the spatial pattern in δ13C anomalies supports the biological pump hypothesis, which predicts that reduced export of light carbon from the euphotic zone triggers negative carbon isotope anomalies in the surface ocean and positive anomalies at intermediate depths. Upwelling of relatively 13C-enriched intermediate waters tends to moderate carbon isotope minima in upwelling regions. Our results suggest that the initial rise in atmospheric CO2 during Termination 1 was likely due to weakening of the biological pump associated with a reduction in the Atlantic Meridional Overturning Circulation, consistent with model results (Schmittner and Lund, 2015). Spero, H., and D. Lea (2002) Science 296, 522-525. Schmittner, A., and D. Lund (2015) Climate of the Past 11, 135-152.

Physico-chemical and biological factors influencing dinoflagellate cyst production in the Cariaco Basin

NASA Astrophysics Data System (ADS)

Bringué, Manuel; Thunell, Robert C.; Pospelova, Vera; Pinckney, James L.; Romero, Oscar E.; Tappa, Eric J.

2018-04-01

We present a 2.5-year-long sediment trap record of dinoflagellate cyst production in the Cariaco Basin, off Venezuela (southern Caribbean Sea). The site lies under the influence of wind-driven, seasonal upwelling which promotes high levels of primary productivity during boreal winter and spring. Changes in dinoflagellate cyst production is documented between November 1996 and May 1999 at ˜ 14-day intervals and interpreted in the context of in situ observations of physico-chemical and biological parameters measured at the mooring site. Dinoflagellate cyst assemblages are diverse (57 taxa) and dominated by cyst taxa of heterotrophic affinity, primarily Brigantedinium spp. (51 % of the total trap assemblage). Average cyst fluxes to the trap are high (17.1 × 103 cysts m-2 day-1) and show great seasonal and interannual variability. On seasonal timescales, dinoflagellate cyst production responds closely to variations in upwelling strength, with increases in cyst fluxes of several protoperidinioid taxa observed during active upwelling intervals, predominantly Brigantedinium spp. Cyst taxa produced by autotrophic dinoflagellates, in particular Bitectatodinium spongium, also respond positively to upwelling. Several spiny brown cysts contribute substantially to the assemblages, including Echinidinium delicatum (9.7 %) and Echinidinium granulatum (7.3 %), and show a closer affinity to weaker upwelling conditions. The strong El Niño event of 1997/98 appears to have negatively impacted cyst production in the basin with a 1-year lag, and may have contributed to the unusually high fluxes of cysts type Cp (possibly the cysts of the toxic dinoflagellate Cochlodinium polykrikoides sensu Li et al., 2015), with cyst type Cp fluxes up to 11.8 × 103 cysts m-2 day-1 observed during the weak upwelling event of February-May 1999. Possible trophic interactions between dinoflagellates and other major planktonic groups are also investigated by comparing the timing and magnitude of cyst production with proxies for phytoplanktonic communities (from photopigment data) and micro- to macrozooplankton abundance indicators (from palynological data) at the site. This work provides new, detailed insights into the ecology of cyst-producing dinoflagellates and will allow for more detailed interpretations of fossil assemblages extracted from sedimentary records in the basin and elsewhere.

Storm Driven Upwelling Responsible for pCO2-rich Water Intrusion in the South Atlantic Bight

NASA Astrophysics Data System (ADS)

Noakes, S.; Gledhill, D. K.

2016-02-01

Gray's Reef National Marine Sanctuary (GRNMS) is located approximately 20 miles offshore Georgia along the inner to middle shelf of the South Atlantic Bight (SAB). The University of Georgia (UGA) and the Pacific Marine Environmental Lab have maintained a high resolution pCO2 system for almost a decade on the National Data Buoy Center's buoy moored at GRNMS. To support the surface monitoring and set the stage for benthic monitoring at GRNMS, UGA and GRNMS have established a seafloor observatory that monitors pCO2, pH and water quality parameters. Traditional thought had held that given the relatively shallow water depth at GRNMS, the pCO2 measured on the surface could be extrapolated to the seafloor and utilized to monitor the benthic community. However, seafloor pCO2 data collected to date have revealed unusual episodes of subsurface pCO2-rich water moving through GRNMS that had not been previously identified by surface monitoring. Many of these events correspond with major storms that have either formed off the SAB or passed nearby GRNMS. Based on the surface data collected to date, temperature driven seasonal pCO2 changes occur naturally on an annual scale in the SAB which also affects the pH. However, the storms appear to have induced upwelling of pCO2-rich water from the deep Atlantic Ocean pushing it inward over the long continental shelf towards GRNMS. The result of the upwelling is a sharp increase of subsurface pCO2 lasting only days to weeks as compared to the seasonal cycle. It is part of the natural weather patterns for storms to form off the SAB or pass nearby, but depending on if the storm frequency increases due to global climate change, this process may become more of an impact on the benthic community. How this affects the benthic community has yet to be determined, but it is clear that they have adapted to seasonal fluctuations for survival. These upwellings are obviously adding to the SAB total carbon budget and affecting the benthic water quality, but to what extent have yet to be determined.

Upwelling to Outflowing Oxygen Ions at Auroral Latitudes during Quiet Times: Exploiting a New Satellite Database

NASA Astrophysics Data System (ADS)

Redmon, Robert J.

The mechanisms by which thermal O+ escapes from the top of the ionosphere and into the magnetosphere are not fully understood even with 30 years of active research. This thesis introduces a new database, builds a simulation framework around a thermospheric model and exploits these tools to gain new insights into the study of O+ ion outflows. A dynamic auroral boundary identification system is developed using Defense Meteorological Satellite Program (DMSP) spacecraft observations at 850 km to build a database characterizing the oxygen source region. This database resolves the ambiguity of the expansion and contraction of the auroral zone. Mining this new dataset, new understanding is revealed. We describe the statistical trajectory of the cleft ion fountain return flows over the polar cap as a function of activity and the orientation of the interplanetary magnetic field y-component. A substantial peak in upward moving O+ in the morning hours is discovered. Using published high altitude data we demonstrate that between 850 and 6000 km altitude, O+ is energized predominantly through transverse heating; and acceleration in this altitude region is relatively more important in the cusp than at midnight. We compare data with a thermospheric model to study the effects of solar irradiance, electron precipitation and neutral wind on the distribution of upward O+ at auroral latitudes. EUV irradiance is shown to play a dominant role in establishing a dawn-focused source population of upwelling O+ that is responsible for a pre-noon feature in escaping O+ fluxes. This feature has been corroborated by observations on platforms including the Dynamics Explorer 1 (DE-1), Polar, and Fast Auroral Snapshot SnapshoT (FAST) spacecraft. During quiet times our analysis shows that the neutral wind is more important than electron precipitation in establishing the dayside O+ upwelling distribution. Electron precipitation is found to play a relatively modest role in controlling dayside, and a critical role in controlling nightside, upwelling O+. This thesis provides a new database, and insights into the study of oxygen ion outflows during quiet times. These results and tools will be essential for researchers working on topics involving magnetosphere-ionosphere interactions.

Surface Energy Balance System (SEBS) Handbook

DOE Office of Scientific and Technical Information (OSTI.GOV)

Cook, DR

2011-02-14

A Surface Energy Balance System (SEBS) has been installed collocated with each deployed ECOR system at the Southern Great Plains (SGP), North Slope of Alaska (NSA), Tropical Western Pacific (TWP), ARM Mobile Facility 1 (AMF1), and ARM Mobile Facility 2 (AMF2). The surface energy balance system consists of upwelling and downwelling solar and infrared radiometers within one net radiometer, a wetness sensor, and soil measurements. The SEBS measurements allow the comparison of ECOR sensible and latent heat fluxes with the energy balance determined from the SEBS and provide information on wetting of the sensors for data quality purposes.

Reverse Estuarine Circulation Due to Local and Remote Wind Forcing, Enhanced by the Presence of Along-Coast Estuaries

NASA Astrophysics Data System (ADS)

Giddings, S. N.; MacCready, P.

2017-12-01

Estuarine exchange flow governs the interaction between oceans and estuaries and thus plays a large role in their biogeochemical processes. This study investigates the variability in estuarine exchange flow due to offshore oceanic conditions including upwelling/downwelling, and the presence of a river plume offshore (from a neighboring estuary). We address these processes via numerical simulations at the mouth of the Salish Sea, a large estuarine system in the Northeast Pacific. An analysis of the Total Exchange Flow indicates that during the upwelling season, the exchange flow is fairly consistent in magnitude and oriented in a positive (into the estuary at depth and out at the surface) direction. However, during periods of downwelling favorable winds, the exchange flow shows significantly more variability including multiple reversals, consistent with observations, and surface intrusions of the Columbia River plume which originates 250 km to the south. Numerical along-strait momentum budgets show that the exchange flow is forced dominantly by the pressure gradients, particularly the baroclinic. The pressure gradient is modified by Coriolis and sometimes advection, highlighting the importance of geostrophy and local adjustments. In experiments conducted without the offshore river plume, reversals still occur but are weaker, and the baroclinic pressure gradient plays a reduced role. These results suggest that estuaries along strong upwelling coastlines should experience significant modulation in the exchange flow during upwelling versus downwelling conditions. Additionally, they highlight the importance of nearby estuaries impacting one-another, not only in terms of connectivity, but also altering the exchange flow.