Medium- and long-term storage of the Pycnanthemum (Mountain mint) germplasm collection

USDA-ARS?s Scientific Manuscript database

The US collection of mountain mint (Pycnanthemum Michx.) is held at the USDA-ARS National Clonal Germplasm Repository (NCGR) in Corvallis, OR as seed, potted plants and tissue cultures and a long-term storage collection is preserved at the USDA-ARS National Center for Genetic Resources Preservation ...

CACAO (THEOBROMA CACAO L.) GENETIC RESOURCES RESEARCH AT THE USDA-ARS TROPICAL AGRICULTURE RESEARCH STATION

USDA-ARS?s Scientific Manuscript database

The current USDA ARS Tropical Agriculture Research Station’s cacao (Theobroma cacao) collection consists of 154 clonally propagated accessions. Each accession is represented by six individual trees grafted on Amelonado rootstocks and planted in a completely randomized block design with three blocks...

Rice diversity panels available through the genetic stocks oryza collection

USDA-ARS?s Scientific Manuscript database

The Genetic Stocks Oryza (GSOR) Collection was established in 2004 at the USDA-ARS, Dale Bumpers National Rice Research Center (DBNRRC) located in Stuttgart, AR. The mission of GSOR is to provide unique genetic resources to the rice research community for genetic and genomics related research. GSOR ...

Sustaining the future of plant breeding: The critical role of the USDA-ARS National Plant Germplasm System

USDA-ARS?s Scientific Manuscript database

Plant breeders require genetic diversity in their breeding programs to develop cultivars that are productive, nutritious, tolerant of biotic and abiotic stresses, and make efficient use of water and fertilizer. The USDA-ARS National Plant Germplasm System (NPGS) is a major source for global plant ge...

The World Sugarcane and Related Grasses Collection at USDA/ARS Genebank Repository in Miami, Florida, USA

USDA-ARS?s Scientific Manuscript database

In early 1980’s the USDA-ARS established the National Plant Germplasm System (NPGS) a network of gene banks to preserve genetic resources of importance to National and International agriculture. The National Clonal Germplasm Repository (NCGR) in Miami, Florida is one of these repositories. This repo...

Total leaf crude protein, amino acid composition and elemental content in the USDA-ARS bamboo germplasm collection

USDA-ARS?s Scientific Manuscript database

Bamboo shoots and leaves are valuable food sources for both humans and livestock. The USDA-ARS National Plant Germplasm System (NPGS) collections hold 93 bamboo species in 20 genera. Total leaf protein, amino acid composition and elemental content for these important genetic resources had never bee...

Advances in breeding at USDA

USDA-ARS?s Scientific Manuscript database

Genetic research of the sunflower research unit, USDA-ARS, in Fargo, ND, was discussed in a presentation to a group of producers, industry representatives, and scientists. The need for sunflower genetic research is ever increasing with more insect and disease problems nationwide. Preliminary data on...

Genetic diversity among wheat accessions from the USDA National Small Grains Collection

USDA-ARS?s Scientific Manuscript database

Accessions of Triticum aestivum subsp. aestivum from the USDA-ARS National Small Grains Collection (NSGC) are a resource for wheat scientists worldwide. The genetic diversity of the wheat core subset, representing approximately 10% of the collection’s 42138 T. aestivum accessions, was examined using...

Assessment of molecular diversity and population structure of the Ethiopian sorghum [Sorghum bicolor L. (Moench)] germplasm collection maintained by the USDA-ARS National Plant Germplasm System using SSR markers

USDA-ARS?s Scientific Manuscript database

The genetic diversity and population structure present in the Ethiopian sorghum collection maintained at the USDA-ARS National Plant Germplasm System (NPGS) has not been studied. In addition, 83% of the accessions in the Ethiopian collection lack passport information which has constrained their eval...

Association analysis using USDA diverse rice (Oryza sativa L.) germplasm collections to identify loci influencing grain quality traits

USDA-ARS?s Scientific Manuscript database

he USDA rice (Oryza sativa L.) core subset (RCS) was assembled to represent the genetic diversity of the entire USDA-ARS National Small Grains Collection and consists of 1,794 accessions from 114 countries. The USDA rice mini-core (MC) is a subset of 217 accessions from the RCS and was selected to ...

The development of a droplet-vitrification method to conserve Vitis collections in the USDA-ARS National Plant Germplasm System and UDESC-CAV Santa Catarina State University in Brazil

USDA-ARS?s Scientific Manuscript database

Both the United States and Brazil maintain vast collections of grape genetic resources. We share a common interest in using cryopreservation methods for the secure, long-term back-up of accessions within these field collections of the USDA-ARS National Plant Germplasm System and UDESC-CAV Santa Cata...

75 FR 32356 - Pioneer Hi-Bred International, Inc.; Determination of Nonregulated Status for Genetically...

Federal Register 2010, 2011, 2012, 2013, 2014

2010-06-08

... DEPARTMENT OF AGRICULTURE Animal and Plant Health Inspection Service [Docket No. APHIS-2007-0156] Pioneer Hi-Bred International, Inc.; Determination of Nonregulated Status for Genetically Engineered High-oleic Soybeans AGENCY: Animal and Plant Health Inspection Service, USDA. ACTION: Notice. SUMMARY: We are...

77 FR 41350 - Monsanto Co.; Determination of Nonregulated Status of Soybean Genetically Engineered To Produce...

Federal Register 2010, 2011, 2012, 2013, 2014

2012-07-13

... MON 87769, which has been genetically engineered to produce stearidonic acid, an omega-3 fatty acid... 87769, which has been genetically engineered to produce stearidonic acid, an omega-3 fatty acid not... NEPA (40 CFR parts 1500-1508), (3) USDA regulations implementing NEPA (7 CFR part 1b), and (4) APHIS...

Cryopreserved storage of clonal germplasm in the USDA National Plant Germplasm System

USDA-ARS?s Scientific Manuscript database

The U.S. Department of Agriculture-Agricultural Research Service (USDA-ARS), National Plant Germplasm System (NPGS) plant collections are a critical source of genetic diversity for breeding and selection of improved crops, including vegetatively propagated plants. Information on these collections is...

Contact USDA-ARS | USDA Plant Hardiness Zone Map

Science.gov Websites

USDA Logo Agricultural Research Service United States Department of Agriculture Mapping by PRISM / Help / Contact USDA-ARS Topics How to Use This Website Contact USDA-ARS Contact USDA Agricultural Mapping, please contact the USDA Agricultural Research Service by sending an e-mail to phzm@ars.usda.gov

Forest service access to and use of the Germplasm Information Network (GRIN-Global) database and security backup at the National Laboratory for Genetic Resource Preservation

Treesearch

B. Loth; R.P. Karrfalt

2017-01-01

The U.S. Department of Agriculture Forest Service (USDA FS) National Seed Laboratory (NSL) began long term seed storage for genetic conservation, in 2005, for USDA FS units and cooperators. This program requires secure storage of both seeds and the data documenting the identification of the seeds. The Agricultural Research Service (ARS) has provided both of these...

Phenotypic Characterization of a Diversity Panel of Tomato

USDA-ARS?s Scientific Manuscript database

At the USDA, ARS Plant Genetic Resources Unit (PGRU) we have phenotypically characterized more than 2,000 accessions of tomato (Solanum lycopersicum L.) for which data are publically available on the National Plant Germplasm System (NPGS) Germplasm Resources Information Network (GRIN) (http://www.ar...

Protein and quality analyses of accessions from the USDA soybean germplasm collection for tofu production

USDA-ARS?s Scientific Manuscript database

Food-grade soybeans with large seed size, uniformity, clear hilum, and high 11S/7S ratio are favored by the food industry for making tofu. In order to search for soybean lines with desirable characteristics for making foods, twenty-two soybean lines were selected from the USDA-Soybean Germplasm Coll...

Breeding and quantitative genetics advances in sunflower Sclerotinia research

USDA-ARS?s Scientific Manuscript database

Genetic research of the sunflower research unit, USDA-ARS, in Fargo, ND, was discussed in a presentation to a group of producers, industry representatives, and scientists. The need for sunflower quantitative genetics research to find and capture Sclerotinia resistance is increasing with every year t...

Meterological Effects on Soil Mositure and Crop Yield as Determined From the Soybean Crop Simulator: GLYCIM.

DTIC Science & Technology

1994-12-01

ivaU.ittlUi> 0**** A ■ijgP ^m1 We approve the thesis of Stephen N. Di Rienzo. Tobv/N. Carlson Professor of Meteorology Thesis Advisor Basil ...and guidance on this project. I would also like to thank Dr. Basil Acock, USDA, ARS, Systems Research Lab for his critique of this thesis. Many thanks...soil moisture could be made. Application of pesticides for controlling underground pests could be better regulated, and, finally, less soil would be

Genetic conservation, characterization and utilization of wild relatives of fruit and nut crops at the USDA Germplasm Repository in Davis, California

USDA-ARS?s Scientific Manuscript database

The National Clonal Germplasm Repository (NCGR) in Davis is one among the nine repositories in the National Plant Germplasm System, USDA-ARS that is responsible for conservation of clonally propagated woody perennial subtropical and temperate fruit and nut crop germplasm. Currently the repository ho...

Germplasm Release: Tissue Culture-Derived Curly Top-Resistant Genetic Stock

USDA-ARS?s Scientific Manuscript database

The USDA-ARS sugarbeet research program at Kimberly is focused on discovering novel genes for resistance to beet curly top and other economically important diseases. It is vital in genetics research to develop uniform breeding lines and genetic stocks to study inheritance, gene transfer (through co...

Mathematical Ecology Analysis of Geographical Distribution of Soybean-Nodulating Bradyrhizobia in Japan

PubMed Central

Saeki, Yuichi; Shiro, Sokichi; Tajima, Toshiyuki; Yamamoto, Akihiro; Sameshima-Saito, Reiko; Sato, Takashi; Yamakawa, Takeo

2013-01-01

We characterized the relationship between the genetic diversity of indigenous soybean-nodulating bradyrhizobia from weakly acidic soils in Japan and their geographical distribution in an ecological study of indigenous soybean rhizobia. We isolated bradyrhizobia from three kinds of Rj-genotype soybeans. Their genetic diversity and community structure were analyzed by PCR-RFLP analysis of the 16S–23S rRNA gene internal transcribed spacer (ITS) region with 11 Bradyrhizobium USDA strains as references. We used data from the present study and previous studies to carry out mathematical ecological analyses, multidimensional scaling analysis with the Bray-Curtis index, polar ordination analysis, and multiple regression analyses to characterize the relationship between soybean-nodulating bradyrhizobial community structures and their geographical distribution. The mathematical ecological approaches used in this study demonstrated the presence of ecological niches and suggested the geographical distribution of soybean-nodulating bradyrhizobia to be a function of latitude and the related climate, with clusters in the order Bj123, Bj110, Bj6, and Be76 from north to south in Japan. PMID:24240318

Evaluation and characterization of a genetically diverse Musa germplasm core subset.

USDA-ARS?s Scientific Manuscript database

The USDA-ARS, Tropical Agriculture Research Station is responsible for curating germplasm of several regionally and internationally important agricultural crops. Evaluation and characterization of Musa (bananas) genetic resources are an important component of programmed research. In a global coll...

Assessing genetic diversity of wild Southeastern American Vaccinium species using microsatellite markers

USDA-ARS?s Scientific Manuscript database

The United States Department of Agriculture (USDA)-Agricultural Research Service (ARS), National Clonal Germplasm Repository (NCGR) in Corvallis, Oregon, preserves genetic resources of fruit crops. This genebank contains more than 1700 Vaccinium accessions from 33 countries. Wild species representat...

Genetic Diversity and Geographical Distribution of Indigenous Soybean-Nodulating Bradyrhizobia in the United States

PubMed Central

Shiro, Sokichi; Matsuura, Syota; Saiki, Rina; Sigua, Gilbert C.; Yamamoto, Akihiro; Umehara, Yosuke; Hayashi, Masaki

2013-01-01

We investigated the relationship between the genetic diversity of indigenous soybean-nodulating bradyrhizobia and their geographical distribution in the United States using nine soil isolates from eight states. The bradyrhizobia were inoculated on three soybean Rj genotypes (non-Rj, Rj2Rj3, and Rj4). We analyzed their genetic diversity and community structure by means of restriction fragment length polymorphisms of PCR amplicons to target the 16S-23S rRNA gene internal transcribed spacer region, using 11 USDA Bradyrhizobium strains as reference strains. We also performed diversity analysis, multidimensional scaling analysis based on the Bray-Curtis index, and polar ordination analysis to describe the structure and geographical distribution of the soybean-nodulating bradyrhizobial community. The major clusters were Bradyrhizobium japonicum Bj123, in the northern United States, and Bradyrhizobium elkanii, in the middle to southern regions. Dominance of bradyrhizobia in a community was generally larger for the cluster belonging to B. elkanii than for the cluster belonging to B. japonicum. The indigenous American soybean-nodulating bradyrhizobial community structure was strongly correlated with latitude. Our results suggest that this community varies geographically. PMID:23563944

Identification and conservation of apple genetic diversity

USDA-ARS?s Scientific Manuscript database

The USDA-ARS National Plant Germplasm System (NPGS) maintains a vast collection of plant genetic resources that includes over 570,000 accessions representing nearly 15,000 species. This collection is dispersed amongst 17 active sites throughout the United States. The NPGS base collection at the Nati...

Assessment of Genetic and Molecular Approaches for the Prediction of Wheat Quality

USDA-ARS?s Scientific Manuscript database

Assessment of genetic and molecular approaches for the prediction of wheat quality. R.A. Graybosch, USDA-ARS, Lincoln, NE, U.S.A. Over the past four decades, the field of plant breeding and genetics has been revolutionized by technological advances in the areas of DNA manipulation and evaluation. Fo...

Germplasm morgue or gold mine? Enhancing the value of plant genetic resource collections for plant breeding

USDA-ARS?s Scientific Manuscript database

Genetic diversity is the raw material that plant breeders require to develop cultivars that are productive, nutritious, pest and stress tolerant, and water and nutrient use efficient. The USDA-ARS National Plant Germplasm System (NPGS) contains a wealth of genetic diversity, including improved varie...

Inoculation with an enhanced N2-fixing Bradyrhizobium japonicum strain (USDA110) does not alter soybean (Glycine max Merr.) response to elevated [CO2

USDA-ARS?s Scientific Manuscript database

This study tested the hypothesis that inoculation of soybean (Glycine max Merr.) with a selected Bradyrhizobium japonicum strain (USDA110) with greater N2 fixation rates would enhance soybean photosynthetic, growth and yield response to elevated [CO2]. In field experiments at the Soybean Free Air CO...

Prospects of Genomic Prediction in the USDA Soybean Germplasm Collection: Historical Data Creates Robust Models for Enhancing Selection of Accessions.

PubMed

Jarquin, Diego; Specht, James; Lorenz, Aaron

2016-08-09

The identification and mobilization of useful genetic variation from germplasm banks for use in breeding programs is critical for future genetic gain and protection against crop pests. Plummeting costs of next-generation sequencing and genotyping is revolutionizing the way in which researchers and breeders interface with plant germplasm collections. An example of this is the high density genotyping of the entire USDA Soybean Germplasm Collection. We assessed the usefulness of 50K single nucleotide polymorphism data collected on 18,480 domesticated soybean (Glycine max) accessions and vast historical phenotypic data for developing genomic prediction models for protein, oil, and yield. Resulting genomic prediction models explained an appreciable amount of the variation in accession performance in independent validation trials, with correlations between predicted and observed reaching up to 0.92 for oil and protein and 0.79 for yield. The optimization of training set design was explored using a series of cross-validation schemes. It was found that the target population and environment need to be well represented in the training set. Second, genomic prediction training sets appear to be robust to the presence of data from diverse geographical locations and genetic clusters. This finding, however, depends on the influence of shattering and lodging, and may be specific to soybean with its presence of maturity groups. The distribution of 7608 nonphenotyped accessions was examined through the application of genomic prediction models. The distribution of predictions of phenotyped accessions was representative of the distribution of predictions for nonphenotyped accessions, with no nonphenotyped accessions being predicted to fall far outside the range of predictions of phenotyped accessions. Copyright © 2016 Jarquin et al.

Maize Genetic Resources Collections – Utilizing a Treasure Trove

USDA-ARS?s Scientific Manuscript database

The maize genetic resource collection managed by the USDA-ARS's National Plant Germplasm System is heavily utilized by researchers and educators. A collection of landraces, inbred lines from public and private sector sources, synthetics and key populations, it serves both as a living snapshot of th...

Recovering from iron deficiency chlorosis in near-isogenic soybeans: a microarray study.

PubMed

O'Rourke, Jamie A; Graham, Michelle A; Vodkin, Lila; Gonzalez, Delkin Orlando; Cianzio, Silvia R; Shoemaker, Randy C

2007-05-01

Iron deficiency chlorosis (IDC) in soybeans has proven to be a perennial problem in the calcareous soils of the U.S. upper Midwest. A historically difficult trait to study in fields, the use of hydroponics in a controlled greenhouse environment has provided a mechanism to study genetic variation while limiting environmental complications. IDC susceptible plants growing in calcareous soils and in iron-controlled hydroponic experiments often exhibit a characteristic chlorotic phenotype early in the growing season but are able to re-green later in the season. To examine the changes in gene expression of these plants, near-isogenic lines, iron efficient PI548553 (Clark) and iron inefficient PI547430 (IsoClark), developed for their response to iron deficiency stress [USDA, ARS, National Genetic Resources Program, Germplasm Resources Information Network - GRIN. (Online Database) National Germplasm Resources Laboratory, Beltsville, MD, 2004. Available: http://www.ars.grin.gov/cgi-bin/npgs/html/acc_search.pl?accid=PI+547430. [22] were grown in iron-deficient hydroponic conditions for one week, then transferred to iron sufficient conditions for another week. This induced a phenotypic response mimicking the growth of the plants in the field; initial chlorosis followed by re-greening. RNA was isolated from root tissue and transcript profiles were examined between the two near-isogenic lines using publicly available cDNA microarrays. By alleviating the iron deficiency stress our expectation was that plants would return to baseline expression levels. However, the microarray comparison identified four cDNAs that were under-expressed by a two-fold or greater difference in the iron inefficient plant compared to the iron efficient plant. This differential expression was re-examined and confirmed by real time PCR experimentation. Control experiments showed that these genes are not differentially expressed in plants grown continually under iron rich hydroponic conditions. The expression differences suggest potential residual effects of iron deficiency on plant health.

Assessments of genetic diversity and anthracnose disease response among Zimbabwe sorghum germplasm.

USDA-ARS?s Scientific Manuscript database

The USDA-ARS National Plant Germplasm System maintains a Zimbabwe sorghum collection of 1,235 accessions from different provinces. This germplasm has not been extensively employed in U.S. breeding programs due to the lack of phenotypic and genetic characterization. Therefore, 68 accessions from th...

Theobroma cacao: A genetically integrated physical map and genome-scale comparative synteny analysis

USDA-ARS?s Scientific Manuscript database

A comprehensive integrated genomic framework is considered a centerpiece of genomic research. In collaboration with the USDA-ARS (SHRS) and Mars Inc., the Clemson University Genomics Institute (CUGI) has developed a genetically anchored physical map of the T. cacao genome. Three BAC libraries contai...

Initial experiences utilizing exotic landrace germplasm in an upland cotton breeding program

USDA-ARS?s Scientific Manuscript database

A critical objective of plant breeding programs is accessing new sources of genetic variation. In upland cotton, one of the relatively untapped sources of genetic variation is maintained in the USDA-ARS cotton germplasm collection and is the exotic landrace collection. Photoperiod sensitivity is a m...

Development of insect resistant sunflowers: Updates and challenges

USDA-ARS?s Scientific Manuscript database

Entomology research of the sunflower research unit, USDA-ARS, in Fargo, ND, was discussed in a presentation to a group of producers, industry representatives, and scientists. There are 4 major insect pests for which we have no genetic resistance currently, and the goal of our work is to find genetic...

Specific adaptation and genetic progress for grain yield in Great Plains hard winter wheats, 1987-2010

USDA-ARS?s Scientific Manuscript database

Meeting the food demands of a growing world population will become increasingly difficult should the rate of genetic improvement in grain yield of wheat (Triticum aestivum L.) and other grain crops decelerate. Data from USDA-ARS coordinated long-term regional performance nurseries was used to exami...

7 CFR 3601.3 - Requests for records.

Code of Federal Regulations, 2013 CFR

2013-01-01

... Coordinator, Information Staff, ARS, REE, USDA, Mail Stop 5128, 5601 Sunnyside Avenue, Beltsville, MD 20705...-mail [email protected]ars.usda.gov or [email protected]ars.usda.gov. The FOIA Coordinator is delegated authority to...

7 CFR 3601.3 - Requests for records.

Code of Federal Regulations, 2014 CFR

2014-01-01

... Coordinator, Information Staff, ARS, REE, USDA, Mail Stop 5128, 5601 Sunnyside Avenue, Beltsville, MD 20705...-mail [email protected]ars.usda.gov or [email protected]ars.usda.gov. The FOIA Coordinator is delegated authority to...

7 CFR 3601.3 - Requests for records.

Code of Federal Regulations, 2010 CFR

2010-01-01

... Coordinator, Information Staff, ARS, REE, USDA, Mail Stop 5128, 5601 Sunnyside Avenue, Beltsville, MD 20705...-mail [email protected]ars.usda.gov or [email protected]ars.usda.gov. The FOIA Coordinator is delegated authority to...

7 CFR 3701.3 - Requests for records.

Code of Federal Regulations, 2014 CFR

2014-01-01

..., Information Staff, ARS, REE, USDA, Mail Stop 5128, 5601 Sunnyside Avenue, Beltsville, MD 20705-5128; [email protected]ars.usda.gov or [email protected]ars.usda.gov. The FOIA Coordinator is delegated authority to make...

7 CFR 3701.3 - Requests for records.

Code of Federal Regulations, 2013 CFR

2013-01-01

..., Information Staff, ARS, REE, USDA, Mail Stop 5128, 5601 Sunnyside Avenue, Beltsville, MD 20705-5128; [email protected]ars.usda.gov or [email protected]ars.usda.gov. The FOIA Coordinator is delegated authority to make...

7 CFR 3701.3 - Requests for records.

Code of Federal Regulations, 2012 CFR

2012-01-01

..., Information Staff, ARS, REE, USDA, Mail Stop 5128, 5601 Sunnyside Avenue, Beltsville, MD 20705-5128; [email protected]ars.usda.gov or [email protected]ars.usda.gov. The FOIA Coordinator is delegated authority to make...

7 CFR 3601.3 - Requests for records.

Code of Federal Regulations, 2012 CFR

2012-01-01

... Coordinator, Information Staff, ARS, REE, USDA, Mail Stop 5128, 5601 Sunnyside Avenue, Beltsville, MD 20705...-mail [email protected]ars.usda.gov or [email protected]ars.usda.gov. The FOIA Coordinator is delegated authority to...

7 CFR 3601.3 - Requests for records.

Code of Federal Regulations, 2011 CFR

2011-01-01

... Coordinator, Information Staff, ARS, REE, USDA, Mail Stop 5128, 5601 Sunnyside Avenue, Beltsville, MD 20705...-mail [email protected]ars.usda.gov or [email protected]ars.usda.gov. The FOIA Coordinator is delegated authority to...

7 CFR 3701.3 - Requests for records.

Code of Federal Regulations, 2011 CFR

2011-01-01

..., Information Staff, ARS, REE, USDA, Mail Stop 5128, 5601 Sunnyside Avenue, Beltsville, MD 20705-5128; [email protected]ars.usda.gov or [email protected]ars.usda.gov. The FOIA Coordinator is delegated authority to make...

7 CFR 3701.3 - Requests for records.

Code of Federal Regulations, 2010 CFR

2010-01-01

..., Information Staff, ARS, REE, USDA, Mail Stop 5128, 5601 Sunnyside Avenue, Beltsville, MD 20705-5128; [email protected]ars.usda.gov or [email protected]ars.usda.gov. The FOIA Coordinator is delegated authority to make...

7 CFR 3404.3 - Requests for records.

Code of Federal Regulations, 2011 CFR

2011-01-01

..., Information Staff, ARS, REE, USDA, Room 1-2248, Mail Stop 5128, 5601 Sunnyside Avenue, Beltsville, MD 20705...-mail [email protected]ars.usda.gov or [email protected]ars.usda.gov. The FOIA Coordinator is delegated authority to...

Survival and Competitiveness of Bradyrhizobium japonicum Strains 20 Years after Introduction into Field Locations in Poland

PubMed Central

Narożna, Dorota; Pudełko, Krzysztof; Króliczak, Joanna; Golińska, Barbara; Sugawara, Masayuki; Mądrzak, Cezary J.

2015-01-01

It was previously demonstrated that there are no indigenous strains of Bradyrhizobium japonicum forming nitrogen-fixing root nodule symbioses with soybean plants in arable field soils in Poland. However, bacteria currently classified within this species are present (together with Bradyrhizobium canariense) as indigenous populations of strains specific for nodulation of legumes in the Genisteae tribe. These rhizobia, infecting legumes such as lupins, are well established in Polish soils. The studies described here were based on soybean nodulation field experiments, established at the Poznań University of Life Sciences Experiment Station in Gorzyń, Poland, and initiated in the spring of 1994. Long-term research was then conducted in order to study the relation between B. japonicum USDA 110 and USDA 123, introduced together into the same location, where no soybean rhizobia were earlier detected, and nodulation and competitive success were followed over time. Here we report the extra-long-term saprophytic survival of B. japonicum strains nodulating soybeans that were introduced as inoculants 20 years earlier and where soybeans were not grown for the next 17 years. The strains remained viable and symbiotically competent, and molecular and immunochemical methods showed that the strains were undistinguishable from the original inoculum strains USDA 110 and USDA 123. We also show that the strains had balanced numbers and their mobility in soil was low. To our knowledge, this is the first report showing the extra-long-term persistence of soybean-nodulating strains introduced into Polish soils and the first analyzing the long-term competitive relations of USDA 110 and USDA 123 after the two strains, neither of which was native, were introduced into the environment almost 2 decades ago. PMID:26048934

Survival and Competitiveness of Bradyrhizobium japonicum Strains 20 Years after Introduction into Field Locations in Poland.

PubMed

Narożna, Dorota; Pudełko, Krzysztof; Króliczak, Joanna; Golińska, Barbara; Sugawara, Masayuki; Mądrzak, Cezary J; Sadowsky, Michael J

2015-08-15

It was previously demonstrated that there are no indigenous strains of Bradyrhizobium japonicum forming nitrogen-fixing root nodule symbioses with soybean plants in arable field soils in Poland. However, bacteria currently classified within this species are present (together with Bradyrhizobium canariense) as indigenous populations of strains specific for nodulation of legumes in the Genisteae tribe. These rhizobia, infecting legumes such as lupins, are well established in Polish soils. The studies described here were based on soybean nodulation field experiments, established at the Poznań University of Life Sciences Experiment Station in Gorzyń, Poland, and initiated in the spring of 1994. Long-term research was then conducted in order to study the relation between B. japonicum USDA 110 and USDA 123, introduced together into the same location, where no soybean rhizobia were earlier detected, and nodulation and competitive success were followed over time. Here we report the extra-long-term saprophytic survival of B. japonicum strains nodulating soybeans that were introduced as inoculants 20 years earlier and where soybeans were not grown for the next 17 years. The strains remained viable and symbiotically competent, and molecular and immunochemical methods showed that the strains were undistinguishable from the original inoculum strains USDA 110 and USDA 123. We also show that the strains had balanced numbers and their mobility in soil was low. To our knowledge, this is the first report showing the extra-long-term persistence of soybean-nodulating strains introduced into Polish soils and the first analyzing the long-term competitive relations of USDA 110 and USDA 123 after the two strains, neither of which was native, were introduced into the environment almost 2 decades ago. Copyright © 2015, American Society for Microbiology. All Rights Reserved.

7 CFR 3404.3 - Requests for records.

Code of Federal Regulations, 2010 CFR

2010-01-01

... title and submitted to the FOIA Coordinator, Information Staff, ARS, REE, USDA, Room 1-2248, Mail Stop...-VOICE (301) 504-1743; Facsimile (301) 504-1648; e-mail [email protected]ars.usda.gov or [email protected]ars.usda...

7 CFR 510.3 - Requests for records.

Code of Federal Regulations, 2010 CFR

2010-01-01

... AGRICULTURE PUBLIC INFORMATION § 510.3 Requests for records. Requests for records of ARS under 5 U.S.C. 552(a... Coordinator, Information Staff, ARS, REE, USDA, Mail Stop 5128, 5601 Sunnyside Avenue, Beltsville, MD 20705...-mail [email protected]ars.usda.gov or [email protected]ars.usda.gov. The FOIA Coordinator is delegated authority to...

7 CFR 510.3 - Requests for records.

Code of Federal Regulations, 2011 CFR

2011-01-01

... AGRICULTURE PUBLIC INFORMATION § 510.3 Requests for records. Requests for records of ARS under 5 U.S.C. 552(a... Coordinator, Information Staff, ARS, REE, USDA, Mail Stop 5128, 5601 Sunnyside Avenue, Beltsville, MD 20705...-mail [email protected]ars.usda.gov or [email protected]ars.usda.gov. The FOIA Coordinator is delegated authority to...

7 CFR 510.3 - Requests for records.

Code of Federal Regulations, 2012 CFR

2012-01-01

... AGRICULTURE PUBLIC INFORMATION § 510.3 Requests for records. Requests for records of ARS under 5 U.S.C. 552(a... Coordinator, Information Staff, ARS, REE, USDA, Mail Stop 5128, 5601 Sunnyside Avenue, Beltsville, MD 20705...-mail [email protected]ars.usda.gov or [email protected]ars.usda.gov. The FOIA Coordinator is delegated authority to...

7 CFR 510.3 - Requests for records.

Code of Federal Regulations, 2013 CFR

2013-01-01

... AGRICULTURE PUBLIC INFORMATION § 510.3 Requests for records. Requests for records of ARS under 5 U.S.C. 552(a... Coordinator, Information Staff, ARS, REE, USDA, Mail Stop 5128, 5601 Sunnyside Avenue, Beltsville, MD 20705...-mail [email protected]ars.usda.gov or [email protected]ars.usda.gov. The FOIA Coordinator is delegated authority to...

7 CFR 510.3 - Requests for records.

Code of Federal Regulations, 2014 CFR

2014-01-01

... AGRICULTURE PUBLIC INFORMATION § 510.3 Requests for records. Requests for records of ARS under 5 U.S.C. 552(a... Coordinator, Information Staff, ARS, REE, USDA, Mail Stop 5128, 5601 Sunnyside Avenue, Beltsville, MD 20705...-mail [email protected]ars.usda.gov or [email protected]ars.usda.gov. The FOIA Coordinator is delegated authority to...

Axiom turkey genotyping array

USDA-ARS?s Scientific Manuscript database

The Axiom®Turkey Genotyping Array interrogates 643,845 probesets on the array, covering 643,845 SNPs. The array development was led by Dr. Julie Long of the USDA-ARS Beltsville Agricultural Research Center under a public-private partnership with Hendrix Genetics, Aviagen, and Affymetrix. The Turk...

77 FR 41164 - Joint Subcommittee on Aquaculture Research and Development Strategic Plan

Federal Register 2010, 2011, 2012, 2013, 2014

2012-07-12

... Development Strategic Plan AGENCIES: Agricultural Research Service (ARS), U.S. Department of Agriculture (USDA... Agricultural Research Service (USDA-ARS) announce on behalf of the Federal Interagency Working Group on... http://www.ars.usda.gov/research/programs/programs.htm?np_code=106&docid=22641 . DATES: Written...

Characterization of Insect Resistance Loci in the USDA Soybean Germplasm Collection Using Genome-Wide Association Studies

PubMed Central

Chang, Hao-Xun; Hartman, Glen L.

2017-01-01

Management of insects that cause economic damage to yields of soybean mainly rely on insecticide applications. Sources of resistance in soybean plant introductions (PIs) to different insect pests have been reported, and some of these sources, like for the soybean aphid (SBA), have been used to develop resistant soybean cultivars. With the availability of SoySNP50K and the statistical power of genome-wide association studies, we integrated phenotypic data for beet armyworm, Mexican bean beetle (MBB), potato leafhopper (PLH), SBA, soybean looper (SBL), velvetbean caterpillar (VBC), and chewing damage caused by unspecified insects for a comprehensive understanding of insect resistance in the United States Department of Agriculture Soybean Germplasm Collection. We identified significant single nucleotide (SNP) polymorphic markers for MBB, PLH, SBL, and VBC, and we highlighted several leucine-rich repeat-containing genes and myeloblastosis transcription factors within the high linkage disequilibrium region surrounding significant SNP markers. Specifically for soybean resistance to PLH, we found the PLH locus is close but distinct to a locus for soybean pubescence density on chromosome 12. The results provide genetic support that pubescence density may not directly link to PLH resistance. This study offers a novel insight of soybean resistance to four insect pests and reviews resistance mapping studies for major soybean insects. PMID:28555141

The Second International Symposium on Plant Cryopreservation

USDA-ARS?s Scientific Manuscript database

The Second International Symposium on Plant Cryopreservation was held in Fort Collins, Colorado, USA, from August 11-14, 2013, under the auspices of the International Society for Horticultural Science. The town of Fort Collins is home to the USDA-ARS, National Center for Genetic Resources Preservati...

MaizeGDB: New tools and resource

USDA-ARS?s Scientific Manuscript database

MaizeGDB, the USDA-ARS genetics and genomics database, is a highly curated, community-oriented informatics service to researchers focused on the crop plant and model organism Zea mays. MaizeGDB facilitates maize research by curating, integrating, and maintaining a database that serves as the central...

75 FR 34684 - Privacy Act of 1974; System of Records

Federal Register 2010, 2011, 2012, 2013, 2014

2010-06-18

... Service (ARS). EFFECTIVE DATE: This notice will be adopted without further publication in the Federal... FURTHER INFORMATION CONTACT: Stasia Hutchison, FOIA/PA Officer, ARS, REE, USDA, 5601 Sunnyside [email protected]ars.usda.gov . SUPPLEMENTARY INFORMATION: Pursuant to the PA, 5 U.S.C. 552a, USDA hereby takes the...

Lessons learned from DNA-based tool development and use in a genebank

USDA-ARS?s Scientific Manuscript database

In 2002, a molecular genetics laboratory was established at the United States Department of Agriculture Agricultural Research Service (USDA-ARS), National Clonal Germplasm Repository (NCGR), in Corvallis, Oregon. This facility houses the US national genebank for strawberry (Fragaria L.). A main obje...

Atlantic salmon and eastern oyster breeding programs at the National Cold Water Marine Aquaculture Center

USDA-ARS?s Scientific Manuscript database

The USDA-ARS National Cold Water Marine Aquaculture Center (NCWMAC) focuses on the coldwater marine aquaculture industry's highest priority research needs including development of improved genetic stocks. Coldwater aquaculture production has potential for expansion, and both Atlantic salmon and East...

Introduction to the newly released GRIN-Global

USDA-ARS?s Scientific Manuscript database

The Germplasm Resources Information Network (GRIN) is an information management system that curates data for the USDA-ARS genetic resource collections. GRIN was developed in the late 1980s and has been incrementally improved over the past 35 years. A major revision was recently deployed to service t...

Genetic resources in the USDA, ARS, PGRCU legume crop germplasm collections with phyto-pharmaceutical uses

USDA-ARS?s Scientific Manuscript database

Seventeen health functional legumes including butterfly pea (Clitoria ternatea L.), Indigofera cassioides Rottler ex DC., I. linnaei Ali, I. suffruticosa Mill., hyacinth bean [Lablab purpureus (L.) Sweet], velvetbean [Mucuna pruriens (L.) DC], jicama [Pachyrhizus erosus (L.) Urb.], winged bean [Psop...

78 FR 70529 - Notice of Availability for the Final Environmental Assessment (EA) and Finding No Significant...

Federal Register 2010, 2011, 2012, 2013, 2014

2013-11-26

... given that the U.S. Department of Agriculture (USDA) Agricultural Research Service (ARS) has made a..., 2013. FOR FURTHER INFORMATION CONTACT: Cal Mather, Environmental Protection Specialist, USDA ARS SHEMB...: [email protected]ars.usda.gov . You may contact Mr. Mather for a copy of the FONSI document. Copies of the...

78 FR 65607 - Availability of the Final Environmental Assessment (EA) and Finding of No Significant Impact...

Federal Register 2010, 2011, 2012, 2013, 2014

2013-11-01

... given that the U.S. Department of Agriculture (USDA) Agricultural Research Service (ARS) has made a... 4, 2013. FOR FURTHER INFORMATION CONTACT: Phil Smith, Acting Property Team Lead, USDA-ARS-WBSC, 1001 Holleman Drive East, College Station, Texas 77840; Telephone: 979-260-9449; email: [email protected]ars.usda.gov...

78 FR 65606 - Availability of the Final Environmental Assessment (EA) and a Finding of No Significant Impact...

Federal Register 2010, 2011, 2012, 2013, 2014

2013-11-01

...: Notice is hereby given that the U.S. Department of Agriculture (USDA) Agricultural Research Service (ARS... CONTACT: Cal Mather, Environmental Protection Specialist, USDA-ARS-SHEMB, NCAUR, 1815 N. University Street, Room 2060, Peoria, Illnois 61604, Telephone: 309-681-6608, or email: [email protected]ars.usda.gov . You may...

78 FR 42928 - Draft Environmental Assessment for the Cotton Quality Research Station Land Transfer

Federal Register 2010, 2011, 2012, 2013, 2014

2013-07-18

... Research Station (CQRS) from the USDA Agricultural Research Service (ARS) in Clemson, South Carolina, to... comments related to the proposed CQRS Land Transfer by any of the following methods: Email: [email protected]ars.usda.gov , Fax: 309-681-6683. Mail: USDA-ARS-SHEMB, NCAUR, 1815 North University Avenue, Room 2016...

CottonDB: A resource for cotton genome research

USDA-ARS?s Scientific Manuscript database

CottonDB (http://cottondb.org/) is a database and web resource for cotton genomic and genetic research. Created in 1995, CottonDB was among the first plant genome databases established by the USDA-ARS. Accessed through a website interface, the database aims to be a convenient, inclusive medium of ...

Nuclear and chloroplast microsatellite markers to assess genetic diversity and evolution in hazelnut species, hybrids and cultivars

USDA-ARS?s Scientific Manuscript database

The U.S. Department of Agriculture (USDA), Agricultural Research Service (ARS), National Clonal Germplasm Repository (NCGR) in Corvallis, Oregon, preserves more than 800 accessions of hazelnut (Corylus) including C. avellana cultivars and representatives of 10 other recognized shrub and tree species...

Citrus Research Board-sponsored review of the University of California Riverside citrus breeding

USDA-ARS?s Scientific Manuscript database

In October 2015 the Citrus Research Board (CRB) assembled a panel of experts to review the Citrus Research Board-sponsored Citrus Research and Genetics Programs at University of California Riverside (UCR). The panel consisted of: Gennaro Fazio, USDA/ARS, Geneva, NY; Maria Angeles Forner-Giner, Insti...

Identifying resistance to powdery mildew race 2W in the USDA-ARS watermelon germplasm collection

USDA-ARS?s Scientific Manuscript database

Powdery mildew caused by Podosphaera xanthii has become a common disease of watermelon [Citrullus lanatus (Thunb.) Matsum. & Nakai] in the United States. The disease can be controlled with fungicides. However, it is more economical and environmentally safe to use genetic resistance against this di...

Atlantic salmon and eastern oyster breeding programs at the National Cold Water Marine Aquaculture Center

USDA-ARS?s Scientific Manuscript database

The USDA-ARS National Cold Water Marine Aquaculture Center (NCWMAC) focuses on the coldwater marine aquaculture industry’s highest priority research needs including development of improved genetic stocks. Coldwater aquaculture production has potential for expansion, and both Atlantic salmon and Eas...

Genomics of peanut leaf-spot pathogens; and RNA-interference-mediated control of aflatoxins

USDA-ARS?s Scientific Manuscript database

An overview update of the research done at USDA-ARS National Peanut Research Laboratory will be presented: including: the release of the Cercospora arachidicola genome, sequencing of Cercosporidium personatum, a workflow to study genetic diversity of aflatoxigenic Aspergillus, and progress on the us...

Atlantic salmon breeding program at the National Cold Water Marine Aquaculture Center

USDA-ARS?s Scientific Manuscript database

The USDA-ARS National Cold Water Marine Aquaculture Center (NCWMAC) in Franklin, ME has been supporting the U.S. coldwater marine aquaculture industry for the past thirteen years by developing a genetically improved North American Atlantic salmon. The St. John's River stock was chosen as the focal ...

Morphological and reproductive characterization of guar genetic resources regenerated in Georgia, USA

USDA-ARS?s Scientific Manuscript database

Guar, Cyamopsis tetragonoloba is used worldwide in food, laxatives, paper, oil well drilling, and in the mining industry. The USDA, ARS, PGRCU conserves 1,298 accessions originating from Pakistan and India. Guar accessions were directly planted to the field in Griffin, GA between early May and the s...

The forest and the trees: Applications for molecular markers in the Pecan Breeding Program

USDA-ARS?s Scientific Manuscript database

Inventory specific verification of accession identity is crucial to the function of the National Collection of Genetic Resources (NCGR) for Pecans and Hickories, and is an increasingly important component of the USDA ARS Pecan Breeding Program. The foundation of the NCGR is the living trees maintai...

The Germplasm Enhancement of Maize (GEM) project: A Public-Private Partnership (PPP) to increase genetic diversity in US maize

USDA-ARS?s Scientific Manuscript database

The Germplasm Enhancement of Maize (GEM) Project is a mission-oriented, cooperative research effort of the United States Department of Agriculture – Agricultural Research Service (USDA-ARS), land grant universities, private industry, and international agricultural research centers to broaden the ger...

In vitro maintenance and cryopreservation of Plant Variety Protection vouchers germplasm of Solanum tuberosum cultivars

USDA-ARS?s Scientific Manuscript database

The USDA-ARS, National Center for Genetic Resources Preservation maintains the voucher germplasm of Plant Variety Protection (PVP) potato (S. tuberosum) cultivars registered with the U.S. Plant Variety Protection Office. The potato cultivars are deposited at the Center as tissue culture and are main...

Catalog of banana (Musa spp.) accessions maintained at the USDA-ARS, Tropical Agriculture Reserach Station

USDA-ARS?s Scientific Manuscript database

Banana genetic resources can be found in situ in native habitats in Southeast Asia and the Pacific region. Ex situ collections also exist in important tropical regions of the world as well as in vitro cultures at the Bioversity International Musa Germplasm Transit Centre. Unfortunately, readily avai...

Update to the Atlantic salmon breeding program at the National Cold Water Marine Aquaculture Center

USDA-ARS?s Scientific Manuscript database

The USDA-ARS National Cold Water Marine Aquaculture Center (NCWMAC) in Franklin, ME has been supporting the U.S. coldwater marine aquaculture industry for the past thirteen years by developing a genetically improved North American Atlantic salmon. The St. John's River stock was chosen as the focal ...

USDA-ARS extension activities in medical, veterinary and urban entomology

USDA-ARS?s Scientific Manuscript database

Within the USDA Agricultural Research Service (USDA-ARS), National Program 104 conducts research on veterinary, medical, and urban entomology. The goal of this program is to develop more effective methods of preventing or suppressing insects, ticks, and mites that affect animal and human well-being....

75 FR 24568 - Notice of Intent To Seek OMB Approval To Collect Information: Revision of a Form Pertaining to...

Federal Register 2010, 2011, 2012, 2013, 2014

2010-05-05

... Peer Review of ARS Research Projects AGENCY: Agricultural Research Service (ARS), USDA. ACTION: Notice... scientific peer reviews of all research activities conducted by the USDA. The Office manages the ARS peer review system by centrally planning peer panel reviews for ARS research projects on a five-year cycle...

76 FR 4088 - Notice of Intent To Prepare an Environmental Impact Statement

Federal Register 2010, 2011, 2012, 2013, 2014

2011-01-24

..., USDA, ARS, Pacific West Area, ATTN: USSES Grazing Project 2010 Scoping. E-mail comments to: [email protected] the ARS Web site at: http://www.ars.usda.gov/main/site_main.htm?modecode=53-64-00-00 under ``News and... administrative review or judicial review. Dated: November 22, 2010. Edward B. Knipling, Administrator, ARS. [FR...

Characterization of insect resistance loci in the USDA soybean germplasm collection using genome-wide association studies

USDA-ARS?s Scientific Manuscript database

Management of insects that cause economic damage to yields of soybean mainly rely on insecticide application. Sources of resistance in soybean plant introduction (PIs) to different insect pests have been reported, and some of these resistance sources, like for the soybean aphid (SBA) have been used ...

Review of traditional and non-traditional medicinal genetic resources in the USDA, ARS, PGRCU collection evaluated for flavonoid concentrations and anthocyanin indexes

USDA-ARS?s Scientific Manuscript database

Non-traditional medicinal species include velvetleaf (Abutilon theophrasti Medik.), Desmodium species, Termanus labialis (L.f.) Spreng. and the traditional species consists of roselle (Hibiscus sabdariffa L.). There is a need to identify plant sources of flavonoids and anthocyanins since they have s...

Glucose, stem dry weight variation, principal component and cluster analysis for some agronomic traits among 16 regenerated Crotalaria juncea accessions for potential cellulosic ethanol

USDA-ARS?s Scientific Manuscript database

The United State Department of Agriculture (USDA), Agricultural Research Service, (ARS), Plant Genetic Resources Conservation Unit’s (PGRCU) sunn hemp (Crotalaria juncea L.) germlasm collection consists of 22 accessions. Sixteen (16) accessions of the most seed productive were selected. These access...

Mesos components (CaC12, MgSO4, KH2P04) are critical for improving pear micropropagation

USDA-ARS?s Scientific Manuscript database

The USDA-ARS National Clonal Germplasm Repository in vitro collection contains over 200 pear accessions in 18 species. Due to the wide genetic diversity of this collection there is also a diverse response to growth on standard tissue culture media. An initial study of mineral nutrition using a syste...

Agrobotanical attributes, nitrogen-fixation, enzyme activities and nutraceuticals and tyrosinase enzyme of hyacinth bean (Lablab purpureus L.) - a bio-functional medicinal legume.

USDA-ARS?s Scientific Manuscript database

Hyacinth bean (Lablab purpureus L.) accessions of different origins received from USDA, ARS, Plant Genetic Resources Conservation Unit, Griffin, GA, U.S.A. were evaluated for agrobotanical attributes, enzyme activities, nutraceuticals and quality in pot culture at AMU, Aligarh, Uttar Pradesh. Fresh ...

USDA/ARS Organic Production Research

USDA-ARS?s Scientific Manuscript database

For much of its history, USDA/ARS had little to do with research on organic agriculture, however research in organic systems has made considerable gains at the agency over the past decade. In the 1980's and 1990's, as the organic food industry was taking off, ARS researchers who wanted to serve orga...

Protein and quality analyses of accessions from the USDA soybean germplasm collection for tofu production.

PubMed

Meng, Shi; Chang, Sam; Gillen, Anne M; Zhang, Yan

2016-12-15

Food-grade soybeans with large seed size, uniformity, clear hilum and a high 11S/7S ratio are favoured by the food industry for making tofu. In order to search for soybean lines with desirable characteristics for making foods, 22 soybean lines were selected from the USDA-Soybean Germplasm Collection, were grown in Stoneville, MS for biochemical analysis and tofu texture and sensory quality tests. Eight lines were identified, from 22 lines harvested in 2014, to be suitable for tofu making, as judged by chemical composition and sensory quality of pressed tofu. In the filled tofu making and texture analysis study, the correlation between A3 subunit content and filled tofu firmness was significant (N=22, r=0.77, P<0.001). The results indicated that the A3 subunit could be an indicator for predicting the firmness of tofu. The results provided important food quality information for the selection of soybean genotypes for improving food quality. Copyright © 2016 Elsevier Ltd. All rights reserved.

Facts about Vitamin K

MedlinePlus

... the amount of vitamin K they contain (USDA- ARS, 2015). Table 2. Sources of vitamin K. Food ... U.S. Department of Agriculture, Agricultural Research Service USDA-ARS. (2015). National Nutrient Database for Standard Reference, Release ...

75 FR 50983 - Privacy Act of 1974; System of Records

Federal Register 2010, 2011, 2012, 2013, 2014

2010-08-18

... and delete two systems of records maintained by the Agricultural Research Service (ARS). DATES: Submit... [email protected]ars.usda.gov . SUPPLEMENTARY INFORMATION: Pursuant to the PA, 5 U.S.C. 552a, USDA hereby.../ARS-2, Research Medical Records System on Patients and Human Volunteers Participating in Research at...

77 FR 55451 - Notice of Intent To Request an Extension of a Currently Approved Information Collection

Federal Register 2010, 2011, 2012, 2013, 2014

2012-09-10

... of 1995, this notice announces the Agricultural Research Service's (ARS) intention to request an..., 2012. ADDRESSES: Comments may be sent to June Blalock, USDA, ARS, Office of Technology Transfer, 5601... INFORMATION CONTACT: June Blalock, USDA, ARS, Office of Technology Transfer, 301-504-5989. SUPPLEMENTARY...

78 FR 14103 - Request for Information (RFI) Regarding the Planned Biotechnology Development Module (BDM) as...

Federal Register 2010, 2011, 2012, 2013, 2014

2013-03-04

... the United States Department of Agriculture (USDA), Agricultural Research Service (ARS) and Animal and...-ARS, USDA-APHIS, and DHS) to implement early product development initiatives in partnership with... will support customers from all three NBAF user groups (DHS S&T, ARS, and APHIS) as well as potential...

75 FR 37749 - Notice of Intent To Request an Extension of a Currently Approved Information Collection

Federal Register 2010, 2011, 2012, 2013, 2014

2010-06-30

... Paperwork Reduction Act of 1995, this notice announces the Agricultural Research Service's (ARS) intention... received on or before September 3, 2010. ADDRESSES: Comments may be sent to June Blalock, USDA, ARS, Office...; Telephone Number 301-504-5989. FOR FURTHER INFORMATION CONTACT: June Blalock, USDA, ARS, Office of...

Current status of the banana and plantain collection at the USDA-ARS Tropical Agriculture Research Station, Mayaguez, Puerto Rico

USDA-ARS?s Scientific Manuscript database

Banana (Musa acuminata Colla. [AA, AAA]; Musa x paradisiaca Colla [ABB, AAAB, AABB]), are large monocotyledonous plants in the Musaceae family and is one of the world’s furthermost important crops in the world. High genetic variability can be found in centers of origin, but the lack of diversity in...

Effect of Sunn Hemp (Crotalaria juncea L.) Cutting Date and Planting Density on Weed Suppression in Georgia, USA

USDA-ARS?s Scientific Manuscript database

A field study was conducted in 2008 and 2009 at the USDA, ARS, Plant Genetic Resources Conservation Unit in Griffin, GA to investigate weed suppression by sunn hemp (Crotalaria juncea L). The objectives were to: 1) evaluate the effects of apical meristem removal (AMR) at three dates [5, 6, and 7 wks...

The American cranberry crowned jewel of the bog at the 2014 U.S.A. Science & Engineering Festival

USDA-ARS?s Scientific Manuscript database

For researchers in Dr. Juan Zalapa’s Cranberry Genetics and Genomics Lab, part of the USDA-ARS Vegetable Crops Research Unit, cranberries are more than a side dish on their Thanksgiving tables, they are the main course in their daily studies. The majority of these little red super-fruits come from t...

Production comparisons of Chinese water chestnut [Eleocharis dulcis (Burm. f.) Trin. ex Hensch] functional corms grown in hydroponics versus flooded sand

USDA-ARS?s Scientific Manuscript database

Chinese water chestnut [Eleocharis dulcis (Burm. f.) Trin. ex Hensch.] corms are used as a canned or raw vegetable worldwide and may have potential use as a functional vegetable for human health uses. The accessions in the USDA, ARS, Plant Genetic Resources Conservation Unit do not produce very many...

A modified mass selection scheme for creating winter-hardy faba bean (Vicia faba L.) lines with a broad genetic base

USDA-ARS?s Scientific Manuscript database

Winter-hardy faba bean (Vicia faba L.) from northern Europe is represented by a rather narrow gene pool. Limited selection gains for overwintering beyond a maximum of -25°C have restricted the adoption of this crop. Therefore, the faba bean collection maintained by the USDA-ARS National Plant Germpl...

7 CFR 3404.3 - Requests for records.

Code of Federal Regulations, 2013 CFR

2013-01-01

..., Information Staff, ARS, REE, USDA, Room 1-2248, Mail Stop 5128, 5601 Sunnyside Avenue, Beltsville, MD 20705...; or E-mail [email protected]ars.usda.gov. The FOIA Coordinator is delegated authority to make determinations...

7 CFR 3404.2 - Public inspection, copying, and indexing.

Code of Federal Regulations, 2013 CFR

2013-01-01

..., ARS, REE, USDA, Room 1-2248, Mail Stop 5128, 5601 Sunnyside Avenue, Beltsville, MD 20705-5128.... Information maintained in our electronic reading room can be accessed at http://www.ars.usda.gov/is/foia...

7 CFR 3404.2 - Public inspection, copying, and indexing.

Code of Federal Regulations, 2012 CFR

2012-01-01

..., ARS, REE, USDA, Room 1-2248, Mail Stop 5128, 5601 Sunnyside Avenue, Beltsville, MD 20705-5128.... Information maintained in our electronic reading room can be accessed at http://www.ars.usda.gov/is/foia...

7 CFR 3404.3 - Requests for records.

Code of Federal Regulations, 2012 CFR

2012-01-01

..., Information Staff, ARS, REE, USDA, Room 1-2248, Mail Stop 5128, 5601 Sunnyside Avenue, Beltsville, MD 20705...; or E-mail [email protected]ars.usda.gov. The FOIA Coordinator is delegated authority to make determinations...

7 CFR 3404.3 - Requests for records.

Code of Federal Regulations, 2014 CFR

2014-01-01

..., Information Staff, ARS, REE, USDA, Room 1-2248, Mail Stop 5128, 5601 Sunnyside Avenue, Beltsville, MD 20705...; or E-mail [email protected]ars.usda.gov. The FOIA Coordinator is delegated authority to make determinations...

7 CFR 3404.2 - Public inspection, copying, and indexing.

Code of Federal Regulations, 2014 CFR

2014-01-01

..., ARS, REE, USDA, Room 1-2248, Mail Stop 5128, 5601 Sunnyside Avenue, Beltsville, MD 20705-5128.... Information maintained in our electronic reading room can be accessed at http://www.ars.usda.gov/is/foia...

AmeriFlux US-AR2 ARM USDA UNL OSU Woodward Switchgrass 2

DOE Office of Scientific and Technical Information (OSTI.GOV)

Billesbach, Dave; Bradford, James

This is the AmeriFlux version of the carbon flux data for the site US-AR2 ARM USDA UNL OSU Woodward Switchgrass 2. Site Description - The ARM USDA UNL OSU Woodward Switchgrass 2 tower is located on public land owned by the USDA-ARS Southern Plains Range Research Station in Woodward, Oklahoma. The site is on a former wheat field that is in the process of changing to switchgrass. A companion site (ARM USDA UNL OSU Woodward Switchgrass 1) is on a former native prairie. Previous wheat was planted in Fall 2008. In Spring 2009, herbicide was applied to kill the wheatmore » prior to switchgrass planting. Later in the year, the site was sprayed with post-emergence herbicide. In 2010, fertilization occurred before herbicide was sprayed for broadleaf control.« less

7 CFR 3404.2 - Public inspection, copying, and indexing.

Code of Federal Regulations, 2011 CFR

2011-01-01

... Staff, ARS, REE, USDA, Room 1-2248, Mail Stop 5128, 5601 Sunnyside Avenue, Beltsville, MD 20705-5128.... Information maintained in our electronic reading room can be accessed at http://www.ars.usda.gov/is/foia...

77 FR 13262 - Notice of Intent To Request an Extension of a Currently Approved Information Collection

Federal Register 2010, 2011, 2012, 2013, 2014

2012-03-06

... 1320 (60 FR 44978, August 29, 1995), this notice announces the Agricultural Research Service (ARS... notice to Wayne Thompson, USDA, ARS, NAL, Collection Services Branch, 10301 Baltimore Ave., Room 305E..., telephone: 301-504-6503; fax: 301-504-7593; email: [email protected]ars.usda.gov . SUPPLEMENTARY INFORMATION: Title...

USDA-ARS and US EPA scientific investigations concerning biochars impact on soil health characteristics, microbial transport, and environmental restoration of mine-impacted soils

EPA Science Inventory

Biochar is being evaluated by scientists from the United States Department of Agriculture (USDA) Agricultural Research Service (ARS) for its potential to sequester soil C, to improve soil health, and to increase crop yields. ARS scientists from multiple locations (Florence SC, K...

78 FR 40425 - Draft Environmental Assessment for the J. Phil Campbell, Senior, Natural Resource Conservation...

Federal Register 2010, 2011, 2012, 2013, 2014

2013-07-05

... Service (ARS) in Watkinsville, Georgia, to the University of Georgia (UGA) College of Agricultural and... Proposed JPC-NRCC Land Transfer by any of the following methods: Email: [email protected]ars.usda.gov , Fax: 309-681-6683. Mail: USDA-ARS-SHEMB, NCAUR, 1815 North University Avenue, Room 2016, Peoria, Ilinois 61604...

The alfalfa research program in USDA-ARS

USDA-ARS?s Scientific Manuscript database

Alfalfa research is currently conducted by scientists employed by the USDA-Agricultural Research Service (ARS) in nine laboratories located in Minnesota (Saint Paul), Wisconsin (Madison, Prairie du Sac, Marshfield), Maryland (Beltsville), Utah (Logan), Washington (Prosser, Pullman), and Iowa (Ames)....

Grain transportation prospects

DOT National Transportation Integrated Search

1999-08-01

Prospects for the U.S. grain and soybean crops have : improved since the first USDA projections for : 1999/2000 production in May. July projections for : combined grain (excluding rice) and soybean production : put this years crop at 15,958 millio...

Screening a diverse soybean germplasm collection for reaction to purple seed stain caused by Cercospora kikuchii

USDA-ARS?s Scientific Manuscript database

Purple seed stain (PSS), caused by Cercospora kikuchii, is a prevalent soybean disease that causes latent seed infection, seed decay, purple seed discoloration, and overall quality deterioration. The objective of this research was to screen soybean accessions from the USDA germplasm collection for r...

The Path for the Development and Release of Heat Tolerant Soybean Lines

USDA-ARS?s Scientific Manuscript database

High ambient temperatures can damage soybean seed. Heat is recognized by the crop insurance industry as a major cause for monetary losses to producers. The USDA Risk Management Agency reported payouts to soybean farmers of more than $247 million on over 1.62 million hectares for losses due to heat...

The tropical fruit and nut collections and research activities at the USDA-ARS Pacific Basin Agricultural Research Center, Tropical Plant Genetic Resource and Disease Research unit

USDA-ARS?s Scientific Manuscript database

In Hawaii, consistency and reliability are important factors determining the success of a crop, for example, longan generated the highest income return for the farmers among the Sapindaceae (lychee, longan and rambutan) group in 2006 because of the use of potassium chlorate for off-season production...

76 FR 62755 - National Agricultural Research, Extension, Education, and Economics Advisory Board Meeting Notice

Federal Register 2010, 2011, 2012, 2013, 2014

2011-10-11

... Board; telephone: (202) 720-3684; fax: (202) 720-6199; or e-mail: [email protected]ars.usda.gov or [email protected]ars.usda.gov . SUPPLEMENTARY INFORMATION: The Honorable Secretary of Agriculture Tom Vilsack, and...

The latest buzz on bugs

USDA-ARS?s Scientific Manuscript database

Tree fruit-related entomological research currently being conducted at the USDA-ARS laboratory in Wapato, WA is reviewed. Scientists at the United States Department of Agriculture, Agricultural Research Service (USDA-ARS) in Wapato, WA conduct research on insect pests of tree fruits and potato. Th...

National-scale crop type mapping and area estimation using multi-resolution remote sensing and field survey

NASA Astrophysics Data System (ADS)

Song, X. P.; Potapov, P.; Adusei, B.; King, L.; Khan, A.; Krylov, A.; Di Bella, C. M.; Pickens, A. H.; Stehman, S. V.; Hansen, M.

2016-12-01

Reliable and timely information on agricultural production is essential for ensuring world food security. Freely available medium-resolution satellite data (e.g. Landsat, Sentinel) offer the possibility of improved global agriculture monitoring. Here we develop and test a method for estimating in-season crop acreage using a probability sample of field visits and producing wall-to-wall crop type maps at national scales. The method is first illustrated for soybean cultivated area in the US for 2015. A stratified, two-stage cluster sampling design was used to collect field data to estimate national soybean area. The field-based estimate employed historical soybean extent maps from the U.S. Department of Agriculture (USDA) Cropland Data Layer to delineate and stratify U.S. soybean growing regions. The estimated 2015 U.S. soybean cultivated area based on the field sample was 341,000 km2 with a standard error of 23,000 km2. This result is 1.0% lower than USDA's 2015 June survey estimate and 1.9% higher than USDA's 2016 January estimate. Our area estimate was derived in early September, about 2 months ahead of harvest. To map soybean cover, the Landsat image archive for the year 2015 growing season was processed using an active learning approach. Overall accuracy of the soybean map was 84%. The field-based sample estimated area was then used to calibrate the map such that the soybean acreage of the map derived through pixel counting matched the sample-based area estimate. The strength of the sample-based area estimation lies in the stratified design that takes advantage of the spatially explicit cropland layers to construct the strata. The success of the mapping was built upon an automated system which transforms Landsat images into standardized time-series metrics. The developed method produces reliable and timely information on soybean area in a cost-effective way and could be implemented in an operational mode. The approach has also been applied for other crops in other regions, such as winter wheat in Pakistan, soybean in Argentina and soybean in the entire South America. Similar levels of accuracy and timeliness were achieved as in the US.

78 FR 47271 - Draft Environmental Assessment for the Kika de la Garza Subtropical Agricultural Research Center...

Federal Register 2010, 2011, 2012, 2013, 2014

2013-08-05

... Agricultural Research Service (ARS) in Weslaco, Texas, to The Texas A&M University System (TAMUS). The KSARC is... Land Transfer by any of the following methods: Email: [email protected]ars.usda.gov , Fax: 979-260-9344. Mail: USDA-ARS-WBSC, 1001 Holleman Drive East, College Station, Texas 77840. Copies of the Draft EA for the...

Symbiosis Island Shuffling with Abundant Insertion Sequences in the Genomes of Extra-Slow-Growing Strains of Soybean Bradyrhizobia

PubMed Central

Iida, Takayuki; Itakura, Manabu; Anda, Mizue; Sugawara, Masayuki; Isawa, Tsuyoshi; Okubo, Takashi; Sato, Shusei; Chiba-Kakizaki, Kaori

2015-01-01

Extra-slow-growing bradyrhizobia from root nodules of field-grown soybeans harbor abundant insertion sequences (ISs) and are termed highly reiterated sequence-possessing (HRS) strains. We analyzed the genome organization of HRS strains with the focus on IS distribution and symbiosis island structure. Using pulsed-field gel electrophoresis, we consistently detected several plasmids (0.07 to 0.4 Mb) in the HRS strains (NK5, NK6, USDA135, 2281, USDA123, and T2), whereas no plasmids were detected in the non-HRS strain USDA110. The chromosomes of the six HRS strains (9.7 to 10.7 Mb) were larger than that of USDA110 (9.1 Mb). Using MiSeq sequences of 6 HRS and 17 non-HRS strains mapped to the USDA110 genome, we found that the copy numbers of ISRj1, ISRj2, ISFK1, IS1632, ISB27, ISBj8, and IS1631 were markedly higher in HRS strains. Whole-genome sequencing showed that the HRS strain NK6 had four small plasmids (136 to 212 kb) and a large chromosome (9,780 kb). Strong colinearity was found between 7.4-Mb core regions of the NK6 and USDA110 chromosomes. USDA110 symbiosis islands corresponded mainly to five small regions (S1 to S5) within two variable regions, V1 (0.8 Mb) and V2 (1.6 Mb), of the NK6 chromosome. The USDA110 nif gene cluster (nifDKENXSBZHQW-fixBCX) was split into two regions, S2 and S3, where ISRj1-mediated rearrangement occurred between nifS and nifB. ISs were also scattered in NK6 core regions, and ISRj1 insertion often disrupted some genes important for survival and environmental responses. These results suggest that HRS strains of soybean bradyrhizobia were subjected to IS-mediated symbiosis island shuffling and core genome degradation. PMID:25862225

Identification of soybean accessions with resistance to Phomopsis seed decay: joint effort from USDA and university scientists

USDA-ARS?s Scientific Manuscript database

Soybean Phomopsis seed decay (PSD) is primarily caused by Phomopsis longicolla along with other Phomopsis and Diaporthe spp. This disease causes poor seed quality and suppresses yield in most soybean-growing states in the United States. In 2009, PSD caused yield loss of over 12 million bushels in 16...

77 FR 26725 - Advisory Committee on Biotechnology and 21st Century Agriculture Meeting

Federal Register 2010, 2011, 2012, 2013, 2014

2012-05-07

...; Fax (202) 690-4265; Email [email protected]ars.usda.gov . SUPPLEMENTARY INFORMATION: The next meeting of the AC21... Email at [email protected]ars.usda.gov at least 5 days prior to the meeting. Please provide your name...

USDA-ARS Quartlerly News

USDA-ARS?s Scientific Manuscript database

This quarterly article is an update of research going on at The USDA-ARS Thad Cochran Southern Horticultural Laboratory in Poplarville, MS to be published in the Louisiana Nursery and Landscape Associations (LANLA) quarterly newsletter. This is one of three publications that I am sending out to the ...

Chemical alternatives to methyl bromide for Florida ornamental production

USDA-ARS?s Scientific Manuscript database

This project is a cooperative effort among USDA, ARS and University of Florida researchers, Florida in-ground ornamental producers, and fumigant industry representatives. Funding is provided through the USDA-ARS Area-wide Pest Management Program for Alternatives to Methyl Bromide. The ornamental i...

Potato-related research at USDA-ARS laboratories in Washington and Idaho

USDA-ARS?s Scientific Manuscript database

Potato-related research currently being conducted at three USDA-ARS laboratories in Idaho and Washington is reviewed. Objectives of research programs at the Temperate Tree Fruit & Vegetable Research Unit (Wapato, WA), the Irrigated Agriculture Research and Extension Center (Prosser, WA), and the Sm...

Update to the USDA-ARS fixed-wing spray nozzle models

USDA-ARS?s Scientific Manuscript database

The current USDA ARS Aerial Spray Nozzle Models were updated to reflect both new standardized measurement methods and systems, as well as, to increase operational spray pressure, aircraft airspeed and nozzle orientation angle limits. The new models were developed using both Central Composite Design...

Evaluating citrus germplasm for huanglongbing (HLB) resistance: USDA-ARS Inoculation Program

USDA-ARS?s Scientific Manuscript database

The Asian citrus psyllid (ACP), Diaphorina citri, is an important pest because it vectors bacteria responsible for a serious disease of citrus known as huanglongbing (citrus greening disease). USDA-ARS researchers recently established a program for screening citrus germplasm for resistance to the di...

Registration of Sawtooth low-phytate, hulled spring barley

USDA-ARS?s Scientific Manuscript database

The Agricultural Research Service, U.S. Department of Agriculture (USDA-ARS), has released 'Sawtooth', (Hordeum vulgare L.) (Reg. No. xxxxxx, P.I. xxxxxx). Sawtooth is a hulless, low-phytate, spring barley, the second to be developed and released by the USDA-ARS. Compared to the previously released ...

Developing a low cortisol responsive line of channel catfish, Ictalurus punctatus

USDA-ARS?s Scientific Manuscript database

Nagaraj G. Chatakondi and Brian C. Peterson USDA ARS Warmwater Aquaculture Research Unit, 141 Experiment Station Road, Stoneville, MS 38776. nagaraj.chatakondi@ars.usda.gov Channel catfish, Ictalurus punctatus is the most important farm-raised aquacultured species in the USA. Stressors in aquacultu...

Development and Applications of a Bovine 50,000 SNP Chip

USDA-ARS?s Scientific Manuscript database

To develop an Illumina iSelect high density single nucleotide polymorphism (SNP) assay for cattle, the collaborative iBMC (Illumina, USDA ARS Beltsville, University of Missouri, USDA ARS Clay Center) Consortium first performed a de novo SNP discovery project in which genomic reduced representation l...

Beta PIs from the USDA-ARS NPGS evaluated for resistance to Cercospora beticola, 2013

USDA-ARS?s Scientific Manuscript database

Thirty-one Plant Introductions (PIs) from the USDA-ARS National Plant Germplasm System were evaluated for resistance to Cercospora beticola in an artificially produced epiphytotic at the Saginaw Valley Research and Extension Center near Frankenmuth, Michigan. Internal controls included a susceptibl...

Beta PIs from the USDA-ARS NPGS evaluated for resistance to Cercospora beticola, 2014

USDA-ARS?s Scientific Manuscript database

Thirty Plant Introductions (PIs) from the USDA-ARS National Plant Germplasm System were evaluated for resistance to Cercospora beticola in an artificially produced epiphytotic at the Saginaw Valley Research and Extension Center near Frankenmuth, Michigan. Internal controls included a susceptible, '...

Beta PIs from the USDA-ARS NPGS evaluated for resistance to Cercospora beticola, 2011

USDA-ARS?s Scientific Manuscript database

Thirty Plant Introductions (PIs) from the USDA-ARS National Plant Germplasm System were evaluated for resistance to Cercospora beticola in an artificially produced epiphytotic at the Saginaw Valley Research and Extension Center near Frankenmuth, MI. Internal controls included a susceptible commercia...

Beta PIs From the USDA-ARS NPGS Evaluated for Resistance to Cercospora beticola, 2009

USDA-ARS?s Scientific Manuscript database

Thirty Plant Introductions (PIs) from the USDA-ARS National Plant Germplasm System were evaluated for resistance to Cercospora beticola in an artificially produced epiphytotic at the Saginaw Valley Research Farm near Frankenmuth, MI. Internal controls included a susceptible commercial variety, CE, ...

Beta PIs from the USDA-ARS NPGS evaluated for resistance to Cercospora beticola, 2012

USDA-ARS?s Scientific Manuscript database

Thirty Plant Introductions (PIs) from the USDA-ARS National Plant Germplasm System were evaluated for resistance to Cercospora beticola in an artificially produced epiphytotic at the Saginaw Valley Research and Extension Center near Frankenmuth, MI. Internal controls included a susceptible germplas...

Beta PIs from the USDA-ARS NPGS evaluated for resistance to Cercospora beticola, 2010

USDA-ARS?s Scientific Manuscript database

Thirty Plant Introductions (PIs) from the USDA-ARS National Plant Germplasm System were evaluated for resistance to Cercospora beticola in an artificially produced epiphytotic at the Saginaw Valley Research and Extension Center near Frankenmuth, MI. Internal controls included a susceptible commercia...

AmeriFlux US-AR1 ARM USDA UNL OSU Woodward Switchgrass 1

DOE Office of Scientific and Technical Information (OSTI.GOV)

Billesbach, Dave; Bradford, James

This is the AmeriFlux version of the carbon flux data for the site US-AR1 ARM USDA UNL OSU Woodward Switchgrass 1. Site Description - The ARM USDA UNL OSU Woodward Switchgrass 1 tower is located on public land owned by the USDA-ARS Southern Plains Range Research Station in Woodward, Oklahoma. The site is on a former native prairie that is in the process of changing to switchgrass. A second companion site (ARM USDA UNL OSU Woodward Switchgrass 2) is on a former wheat field. In Spring 2009, the former native prairie site was burned, cattle were put on the pasturemore » to graze down emergent grass, and broadleaf herbicide was sprayed. In Summer 2009, the cattle were removed from the pasture, and the site was sprayed with herbicide to kill all grass. In Spring 2010, prior to the planting of switchgrass, final herbicide was sprayed to kill cheat grass and to control broadleaf plants.« less

The tropical germplasm repository program at the USDA-ARS, Tropical Agriculture Research Station, Mayaguez, Puerto Rico

USDA-ARS?s Scientific Manuscript database

The USDA-ARS Tropical Agriculture Research Station is the only research entity within the National Plant Germplasm system in the insular Caribbean region. It houses germplasm collections of cultivated tropical/subtropical germplasm of bananas/plantains, cacao, mamey sapote, sapodilla, Spanish lime,...

Research Update: The USDA-ARS-Conservation and Production Research Laboratory, Bushland, Texas

USDA-ARS?s Scientific Manuscript database

This presentation/manuscript provide a brief summary of beef cattle feeding-related research conducted at the USDA-ARS-Conservation and Production Research Laboratory, Bushland, Texas, over the past four years. It summarizes data that has been published in scientific journals, in symposia and confer...

Musa spp. germplasm management: microsatellite fingerprinting of USDA-ARS National Plant Germplasm System (NPGS) collection

USDA-ARS?s Scientific Manuscript database

The USDA-ARS Tropical Agriculture Research Station (TARS) is responsible for conserving germplasm of a number of important agricultural crop species. A banana (Musa spp.) collection has been established at TARS that is comprised of diploid, triploid and tetraploid accessions of cultivated, ornament...

Implementation of Citrus Shoot Tip Cryopreservation in the USDA-ARS National Plant Germplasm System

USDA-ARS?s Scientific Manuscript database

The USDA-ARS National Plant Germplasm System (NPGS) maintains 540 Citrus cultivars and crop wild relatives as duplicate clones in a screenhouse at the National Clonal Germplasm Repository for Citrus and Dates (NCGRCD) in Riverside, California. These 540 accessions are pathogen-tested and apparently ...

Soilborne Diseases of the Nursery Industry: USDA-ARS and OSU Team Up to Tackle this Pernicious Problem

USDA-ARS?s Scientific Manuscript database

Soilborne diseases are a serious problem affecting many crop plants of the ornamental nursery industry. Recently, the Horticultural Crops Research Laboratory (USDA-ARS) and Oregon State University received funding from the Floriculture and Nursery Research Initiative via the Horticultural Research I...

76 FR 71933 - Office of the Under Secretary, Research, Education, and Economics; Notice of the Advisory...

Federal Register 2010, 2011, 2012, 2013, 2014

2011-11-21

...; Email [email protected]ars.usda.gov . SUPPLEMENTARY INFORMATION: The next meeting of the AC21 has been scheduled for... register by contacting Ms. Dianne Fowler at (202) 720-4074 or by Email at [email protected]ars.usda.gov at...

76 FR 48797 - Notice of the Advisory Committee on Biotechnology and 21st Century Agriculture Meeting

Federal Register 2010, 2011, 2012, 2013, 2014

2011-08-09

...; E-mail [email protected]ars.usda.gov . SUPPLEMENTARY INFORMATION: The first meeting of the reconstituted AC21... Ms. Dianne Fowler at (202) 720-4074, by fax at (202) 720-3191 or by e- mail at [email protected]ars.usda...

77 FR 11064 - Notice of the Advisory Committee on Biotechnology and 21st Century Agriculture Meeting

Federal Register 2010, 2011, 2012, 2013, 2014

2012-02-24

...; Fax (202) 690-4265; Email [email protected]ars.usda.gov . SUPPLEMENTARY INFORMATION: The next meeting of the AC21... Fowler at (202) 720-4074 or by Email at [email protected]ars.usda.gov at least 5 days prior to the meeting...

Beet curly top resistance in USDA-ARS Ft. Collins Germplasm, 2012

USDA-ARS?s Scientific Manuscript database

Seventeen sugar beet (Beta vulgaris L.) lines from the USDA-ARS Ft. Collins sugar beet program were screened for resistance to Beet severe curly top virus (BSCTV) and other closely related Curtovirus species in 2012. Commercial sugar beet cultivars Monohikari and HM PM90 were included as susceptibl...

THE TROPICAL AND SUBTROPICAL GERMPLASM COLLECTIONS AT THE NATIONAL GERMPLASM REPOSITORY IN MIAMI, FL

USDA-ARS?s Scientific Manuscript database

The Subtropical and Tropical USDA, ARS, National Germplasm Repositories (NGR) in Miami, FL; Mayaguez, PR; and Hilo, HI are responsible for the collections of subtropical and tropical fruits, nuts, grasses, and ornamentals for the USDA, ARS, National Plant Germplasm System (NPGS). The NPGS is respons...

Registration of Harriman low-phytate, hulled spring barley

USDA-ARS?s Scientific Manuscript database

The Agricultural Research Service, U.S. Department of Agriculture (USDA-ARS), has released 'Harriman', (Hordeum vulgare L.) (Reg. No. xxxxxx, P.I. xxxxxx). Harriman is a hulled, low-phytate barley, the second to be developed and released by the USDA-ARS. Compared to the previously released hulled, l...

History of cotton fiber bioscience research at USDA-ARS Southern Regional Research Center

USDA-ARS?s Scientific Manuscript database

Improving fiber quality has been an important breeding goal for cotton breeders. Better understanding of fiber development helps cotton scientists to devise a strategy for crop improvement either through marker-assisted selection or via manipulation of fiber genes. USDA-ARS Southern Regional Researc...

United States Department of Agriculture/Agricultural Research Service (USDA-ARS) Eastern Regional Research Center Core Technologies

PubMed Central

Nunez, A.; Strahan, G.; Soroka, D.S.; Damert, W.; Needleman, D.

2011-01-01

The Core Technologies (CT) unit, located at the Eastern Regional Research Center (ERRC), is a centralized resource of specialized instrumentation and technologies. Its objective is to provide supplementary research data processing, interpretation, analysis and consultation for a broad range of research programs approved by the Agricultural Research Service (ARS), the in-house research arm of the United States Department of Agriculture. The CT unit is comprised of four research related components: genetic analysis, proteomicsbiopolymers mass spectrometry, electron microscopy, and magnetic resonance spectroscopy (NMR). In addition, the Research Data Systems, the information pipeline of the CT, provides the means to facilitate data distribution to researchers, stakeholders, and the general public. The availability of integrated resource laboratories assures professional and dependable support to the goals of the ARS community.

Analysis of the Symbiotic Performance of Bradyrhizobium japonicum USDA 110 and Its Derivative I-110 and Discovery of a New Mannitol-Utilizing, Nitrogen-Fixing USDA 110 Derivative.

PubMed

Mathis, J N; Israel, D W; Barbour, W M; Jarvis, B D; Elkan, G H

1986-07-01

Previously, Bradyrhizobium japonicum USDA 110 was shown to contain colony morphology variants which differed in nitrogen-fixing ability. Mannitol-utilizing derivatives L1-110 and L2-110 have been shown to be devoid of symbiotic nitrogen fixation ability, and non-mannitol-utilizing derivatives I-110 and S-110 have been shown to be efficient at nitrogen fixation. The objectives of this study were to determine the effect of media carbon sources on the symbiotic N(2)-fixing ability of strain USDA 110 and to compare the effectiveness of strain USDA 110 and derivative I-110. Based on acetylene reduction activity and the nitrogen content of 41-day-old soybean plants, neither derivative I-110 nor cultures of USDA 110 grown in media favoring non-mannitol-using derivatives had symbiotic nitrogen fixation that was statistically superior to that of cultures of USDA 110 grown in media favoring mannitol-using derivatives. In another experiment 200 individual nodules formed by strain USDA 110 grown in yeast extract gluconate were screened for colony morphology of occupying variant(s) and acetylene reduction activity. Nodules occupied by mannitol-using derivatives (large colony type on 0.1% yeast extract-0.05% K(2)HPO(4)-0.08% MgSO(4) . 7H(2)O-0.02% NaCl-0.001% FeCl(3) . 6H(2)O [pH 6.7] with 1% mannitol [YEM] plates) had a mean acetylene reduction activity equal to that of nodules occupied by non-mannitol-using derivatives (small colony type on YEM plates). A total of 20 large colonial derivatives and 10 small colonial derivatives (I-110-like) were isolated and purified by repeated culture in YEM and YEG (same as YEM except 1% gluconate instead of 1% mannitol) media, respectively, followed by dilution in solutions containing 0.05% Tween 40. After 25 days of growth, soybean plants inoculated with the large colony isolates had mean whole-plant acetylene reduction activity, whole-plant dry weight, and whole-plant nitrogen contents equal to or better than those of plants inoculated with either the small colony isolates (I-110-like) or the I-110 (non-mannitol-using) derivative. Hence, the existence of a mannitol-utilizing derivative that fixes nitrogen in a culture of strain USDA 110 obtained from the U.S. Department of Agriculture, Beltsville, Md., was established. This new USDA 110 derivative was designated as MN-110 because it was a mannitol-utilizing nitrogen-fixing USDA 110 derivative. This derivative was morphologically indistinguishable from the non-nitrogen-fixing derivative L2-110 found in cultures obtained earlier from the U.S. Department of Agriculture, Beltsville. DNA-DNA homology and restriction enzyme analyses indicated that MN-110 is genetically related to other USDA 110 derivatives that have been characterized previously.

Water Erosion Prediction Project (WEPP) model status and updates

USDA-ARS?s Scientific Manuscript database

This presentation will provide current information on the USDA-ARS Water Erosion Prediction Project (WEPP) model, and its implementation by the USDA-Forest Service (FS), USDA-Natural Resources Conservation Service (NRCS), and other agencies and universities. Most recently, the USDA-NRCS has begun ef...

Effector-Triggered Immunity Determines Host Genotype-Specific Incompatibility in Legume-Rhizobium Symbiosis.

PubMed

Yasuda, Michiko; Miwa, Hiroki; Masuda, Sachiko; Takebayashi, Yumiko; Sakakibara, Hitoshi; Okazaki, Shin

2016-08-01

Symbiosis between legumes and rhizobia leads to the formation of N2-fixing root nodules. In soybean, several host genes, referred to as Rj genes, control nodulation. Soybean cultivars carrying the Rj4 gene restrict nodulation by specific rhizobia such as Bradyrhizobium elkanii We previously reported that the restriction of nodulation was caused by B. elkanii possessing a functional type III secretion system (T3SS), which is known for its delivery of virulence factors by pathogenic bacteria. In the present study, we investigated the molecular basis for the T3SS-dependent nodulation restriction in Rj4 soybean. Inoculation tests revealed that soybean cultivar BARC-2 (Rj4/Rj4) restricted nodulation by B. elkanii USDA61, whereas its nearly isogenic line BARC-3 (rj4/rj4) formed nitrogen-fixing nodules with the same strain. Root-hair curling and infection threads were not observed in the roots of BARC-2 inoculated with USDA61, indicating that Rj4 blocked B. elkanii infection in the early stages. Accumulation of H2O2 and salicylic acid (SA) was observed in the roots of BARC-2 inoculated with USDA61. Transcriptome analyses revealed that inoculation of USDA61, but not its T3SS mutant in BARC-2, induced defense-related genes, including those coding for hypersensitive-induced responsive protein, which act in effector-triggered immunity (ETI) in Arabidopsis. These findings suggest that B. elkanii T3SS triggers the SA-mediated ETI-type response in Rj4 soybean, which consequently blocks symbiotic interactions. This study revealed a common molecular mechanism underlying both plant-pathogen and plant-symbiont interactions, and suggests that establishment of a root nodule symbiosis requires the evasion or suppression of plant immune responses triggered by rhizobial effectors. © The Author 2016. Published by Oxford University Press on behalf of Japanese Society of Plant Physiologists. All rights reserved. For permissions, please email: journals.permissions@oup.com.

Video data of flowers, fruitlets, and fruit in apple trees during the 2017 growing season at USDA-ARS-AFRS

USDA-ARS?s Scientific Manuscript database

This record contains videos of apple trees acquired from a ground vehicle throughout the growing season at the USDA-ARS, Appalachian Fruit Research Station. Research in precision management methods in orchard crops revolve around locating objects of interest, namely flowers, fruitlets, and fruit, a...

Malus sieversii: a diverse Central Asian apple species in the USDA-ARS National Plant Germplasm System

USDA-ARS?s Scientific Manuscript database

There are several Central Asian Malus species and varieties in the USDA-ARS National Plant Germplasm System (NPGS) apple collection. Malus sieversii is the most comprehensively collected species native to Central Asia. Other taxa such as M. sieversii var. kirghisorum, M. sieversii var. turkmenorum, ...

Long-term agro-ecosystem research or the southern great plains: The USDA-ARS Grazinglands Research Laboratory partnership

USDA-ARS?s Scientific Manuscript database

The USDA Agricultural Research Service (ARS) is coordinating ten well-established research sites as a Long-Term Agro-ecosystem Research (LTAR) Network. The goal of the LTAR is to sustain a land-based infrastructure for research, environmental management testing, and education, that enables understan...

Beta PIs from the USDA-ARS NPGS evaluated for resistance to Cercospora beticola, 2008

USDA-ARS?s Scientific Manuscript database

Sixty-two Plant Introductions (PIs) from the USDA-ARS National Plant Germplasm System were evaluated in an artificially produced epiphytotic for resistance to Cercospora beticola at the Saginaw Valley Bean and Beet Research Farm in MI. Internal controls included a susceptible check, USH20, and a res...

Agricultural Research Service

MedlinePlus

... Durum Wheat Opens Door to Expand Food Uses ARS Research In Your State - choose - Alabama Alaska Arizona ... Media About ARS Work With Us Connect with ARS Sign up ARS Home USDA.gov Plain Writing ...

A population structure and genome-wide association analysis on the USDA soybean germplasm collection

USDA-ARS?s Scientific Manuscript database

Genotype-phenotype associations within the soybean (Glycine max) germplasm collection could provide valuable information on the frequency and distribution of alleles affecting economically important traits. Here we performed a genome-wide association study (GWAS) for seed protein and oil content in ...

Application of Near-Surface Remote Sensing and computer algorithms in evaluating impacts of agroecosystem management on Zea mays (corn) phenological development in the Platte River - High Plains Aquifer Long Term Agroecosystem Research Network field sites.

NASA Astrophysics Data System (ADS)

Okalebo, J. A.; Das Choudhury, S.; Awada, T.; Suyker, A.; LeBauer, D.; Newcomb, M.; Ward, R.

2017-12-01

The Long-term Agroecosystem Research (LTAR) network is a USDA-ARS effort that focuses on conducting research that addresses current and emerging issues in agriculture related to sustainability and profitability of agroecosystems in the face of climate change and population growth. There are 18 sites across the USA covering key agricultural production regions. In Nebraska, a partnership between the University of Nebraska - Lincoln and ARD/USDA resulted in the establishment of the Platte River - High Plains Aquifer LTAR site in 2014. The site conducts research to sustain multiple ecosystem services focusing specifically on Nebraska's main agronomic production agroecosystems that comprise of abundant corn, soybeans, managed grasslands and beef production. As part of the national LTAR network, PR-HPA participates and contributes near-surface remotely sensed imagery of corn, soybean and grassland canopy phenology to the PhenoCam Network through high-resolution digital cameras. This poster highlights the application, advantages and usefulness of near-surface remotely sensed imagery in agroecosystem studies and management. It demonstrates how both Infrared and Red-Green-Blue imagery may be applied to monitor phenological events as well as crop abiotic stresses. Computer-based algorithms and analytic techniques proved very instrumental in revealing crop phenological changes such as green-up and tasseling in corn. This poster also reports the suitability and applicability of corn-derived computer based algorithms for evaluating phenological development of sorghum since both crops have similarities in their phenology; with sorghum panicles being similar to corn tassels. This later assessment was carried out using a sorghum dataset obtained from the Transportation Energy Resources from Renewable Agriculture Phenotyping Reference Platform project, Maricopa Agricultural Center, Arizona.

The development and use of a molecular model for soybean maturity groups.

PubMed

Langewisch, Tiffany; Lenis, Julian; Jiang, Guo-Liang; Wang, Dechun; Pantalone, Vince; Bilyeu, Kristin

2017-05-30

Achieving appropriate maturity in a target environment is essential to maximizing crop yield potential. In soybean [Glycine max (L.) Merr.], the time to maturity is largely dependent on developmental response to dark periods. Once the critical photoperiod is reached, flowering is initiated and reproductive development proceeds. Therefore, soybean adaptation has been attributed to genetic changes and natural or artificial selection to optimize plant development in specific, narrow latitudinal ranges. In North America, these regions have been classified into twelve maturity groups (MG), with lower MG being shorter season than higher MG. Growing soybean lines not adapted to a particular environment typically results in poor growth and significant yield reductions. The objective of this study was to develop a molecular model for soybean maturity based on the alleles underlying the major maturity loci: E1, E2, and E3. We determined the allelic variation and diversity of the E maturity genes in a large collection of soybean landraces, North American ancestors, Chinese cultivars, North American cultivars or expired Plant Variety Protection lines, and private-company lines. The E gene status of accessions in the USDA Soybean Germplasm Collection with SoySNP50K Beadchip data was also predicted. We determined the E allelic combinations needed to adapt soybean to different MGs in the United States (US) and discovered a strong signal of selection for E genotypes released in North America, particularly the US and Canada. The E gene maturity model proposed will enable plant breeders to more effectively transfer traits into different MGs and increase the overall efficiency of soybean breeding in the US and Canada. The powerful yet simple selection strategy for increasing soybean breeding efficiency can be used alone or to directly enhance genomic prediction/selection schemes. The results also revealed previously unrecognized aspects of artificial selection in soybean imposed by soybean breeders based on geography that highlights the need for plant breeding that is optimized for specific environments.

Research overview at USDA-ARS Coastal Plains, Soil, Water and Plant Research Center, and potential collaborative research projects with RDA - NIAS

USDA-ARS?s Scientific Manuscript database

The Center at Florence is one of the ninety research units of the United States Department of Agriculture - Agricultural Research Service (USDA-ARS). The mission of the Center is to conduct research and transfer solutions that improve agricultural production, protect the environment, and enhance the...

Ft. Collins sugar beet germplasm evaluated for rhizomania and storage rot resistance in Idaho, 2015

USDA-ARS?s Scientific Manuscript database

Fifty-seven sugar beet (Beta vulgaris L.) lines from the USDA-ARS Ft. Collins sugar beet program and four check cultivars were screened for resistance to Beet necrotic yellow vein virus (BNYVV), the causal agent of rhizomania, and storage rot. The rhizomania evaluation was conducted at the USDA-ARS...

Vineyard management practices and the quality of grapes and grape products in the Pacific Northwest - USDA-ARS CRIS (Current Research Information System) project

USDA-ARS?s Scientific Manuscript database

One of our three program goals for this USDA-ARS-CRIS project is to determine the effects of vineyard and vine microclimate (sunlight, temperature, humidity, etc) upon fruit development, vine productivity, and fruit quality, particularly phenolic compounds. Plant phenolics are important due to their...

Sensitivity analysis of tracer transport in variably saturated soils at USDA-ARS OPE3 field site

USDA-ARS?s Scientific Manuscript database

The objective of this study was to assess the effects of uncertainties in hydrologic and geochemical parameters on the results of simulations of the tracer transport in variably saturated soils at the USDA-ARS OPE3 field site. A tracer experiment with a pulse of KCL solution applied to an irrigatio...

Root traits contributing to plant productivity under drought

USDA-ARS?s Scientific Manuscript database

ROOT TRAITS CONTRIBUTING TO PLANT PRODUCTIVITY UNDER DROUGHT L.H. Comas1, S.R. Becker2, V.M.V. Cruz3,4, P.F. Byrne2, D.A. Dierig3 1USDA-ARS, Water Management Research Unit, Fort Collins, CO, USA 2Colorado State University, Soil and Crop Sciences, Fort Collins, CO, USA 3USDA-ARS, National Center fo...

Sugar Beet Activities of the USDA-ARS East Lansing Conducted in Cooperation with Saginaw Valley Bean and Beet Farm During 2009

USDA-ARS?s Scientific Manuscript database

Two evaluation plots were planted at the Saginaw Valley Research & Extension Center in Frankenmuth, MI in 2009; one agronomic trial and one combined Cercospora evaluation trial. All trials were planted, following normal fall and spring tillage operations, with a USDA-ARS modified John Deere/Almaco ...

Mosquito and Fly Surveillance and Control Research at the USDA-ARS Center for Medical, Agricultural and Veterinary Entomology: Solving Operational Challenges

USDA-ARS?s Scientific Manuscript database

The Mosquito and Fly Research Unit of the USDA-ARS Center for Medical, Agricultural and Veterinary Entomology located in Gainesville Florida is the largest Federal laboratory devoted to specifically solving operational mosquito and fly surveillance and control challenges in the U.S. and internationa...

Increasing the efficiency and effectiveness of curation of the USDA-ARS world rice collection

USDA-ARS?s Scientific Manuscript database

The world rice collection is part of the USDA-ARS National Small Grains Collection (NSGC) that includes the cereal crops wheat, oats, barley, and rye, as well as related wild species. The Oryza accessions include 12 species that comprise 9% of the NSGC collection. Over 19,000 rice accessions origin...

USDA-ARS Colorado maize water productivity data set

USDA-ARS?s Scientific Manuscript database

The USDA-Agricultural Research Service conducted a water productivity field trial for irrigated maize in northeastern Colorado in 2008 through 2011. The dataset, which is available online from the USDA National Agricultural Library, includes measurements of irrigation, precipitation, soil water sto...

Registration of cotton germplasm USDA MD 16-1 and USDA MD 16-2 with enhanced lint yield and fiber quality.

USDA-ARS?s Scientific Manuscript database

Upland cotton germplasm USDA MD 16-1 (Reg. No. __ and PI ___ ), and USDA MD 16-2 (Reg. No. ___ and PI___) (Gossypium hirsutum L.), have enhanced yield and good fiber quality. These germplasm lines were developed by the USDA-ARS, Stoneville, MS and released in 2017. Two crosses, MD 25-51 X MD 10-9-1 ...

Numerical simulations of water flow and tracer transport in soils at the USDA-ARS Beltsville OPE3 field site

USDA-ARS?s Scientific Manuscript database

The objective of this study was to develop a realistic model to simulate the complex processes of flow and tracer transport in USDA-ARS OPE3 field site and to compare simulation results with the detailed monitoring observations. The site has been studied for over 10 years with the extensive availabl...

The tight-adhesion proteins TadGEF of Bradyrhizobium diazoefficiens USDA 110 are involved in cell adhesion and infectivity on soybean roots.

PubMed

Mongiardini, Elías J; Parisi, Gustavo D; Quelas, Juan I; Lodeiro, Aníbal R

2016-01-01

Adhesion of symbiotic bacteria to host plants is an essential early step of the infection process that leads to the beneficial interaction. In the Bradyrhizobium diazoefficiens-soybean symbiosis few molecular determinants of adhesion are known. Here we identified the tight-adhesion gene products TadGEF in the open-reading frames blr3941-blr3943 of the B. diazoefficiens USDA 110 complete genomic sequence. Predicted structure of TadG indicates a transmembrane domain and two extracytosolic domains, from which the C-terminal has an integrin fold. TadE and TadF are also predicted as bearing transmembrane segments. Mutants in tadG or the small cluster tadGEF were impaired in adhesion to soybean roots, and the root infection was delayed. However, nodule histology was not compromised by the mutations, indicating that these effects were restricted to the earliest contact of the B. diazoefficiens and root surfaces. Knowledge of preinfection determinants is important for development of inoculants that are applied to soybean crops worldwide. Copyright © 2015 Elsevier GmbH. All rights reserved.

Carbon and Water Vapor Fluxes of Different Ecosystems in Oklahoma

NASA Astrophysics Data System (ADS)

Wagle, P.; Gowda, P. H.; Northup, B. K.

2016-12-01

Information on exchange of energy, carbon dioxide (CO2), and water vapor (H2O) for major terrestrial ecosystems is vital to quantify carbon and water balances on a large-scale. It is also necessary to develop, test, and improve crop models and satellite-based production efficiency and evapotranspiration (ET) models, and to better understand the potential of terrestrial ecosystems to mitigate rising atmospheric CO2 concentration and climate change. A network (GRL-FLUXNET) of nine eddy flux towers has been established over a diverse range of terrestrial ecosystems, including native and improved perennial grasslands [unburned and grazed tallgrass prairie, burned and grazed tallgrass prairie, and burned Bermuda grass (Cynodon dactylon L.)], grazed and non-grazed winter wheat (Triticum aestivum L.), till and no-till winter wheat and canola (Brassica napus L.), alfalfa (Medicago sativa L.), and soybean (Glycine max L.), at the USDA-ARS, Grazinglands Research Laboratory, El Reno, OK. In this presentation, we quantify and compare net ecosystem CO2 exchange (NEE) and ET between recently burned and grazed tallgrass prairie and burned and non-grazed Bermuda grass pastures, alfalfa, and soybean. Preliminary results show monthly ensembles average NEE reached seasonal peak values of -29, -35, -25, and -20 µmol m-2 s-1 in burned tallgrass prairie pasture, burned Bermuda grass pasture, alfalfa, and soybean, respectively. Similarly, monthly ensembles average ET reached seasonal peak values of 0.22, 0.27, 0.25, 0.28 mm 30-min-1 in burned tallgrass prairie pasture, burned Bermuda grass pasture, alfalfa, and soybean, respectively. Seasonal patterns and daily magnitudes of NEE and ET and their responses to the similar climatic conditions will be further investigated.

Duplication in the Domestica Apple Collection within the USDA-ARS National Plant Germplasm System in Geneva, New York

USDA-ARS?s Scientific Manuscript database

The USDA-ARS National Plant Germplasm System maintains more than 1300 named accessions of Malus x domestica in a field collection in Geneva, NY. Seven microsatellite markers (GD12, GD15, GD96, GD103, GD142, GD147, GD162) were used to identify duplicates within a set of 1240 domestica accessions with...

USDA Gin Lab Updates

USDA-ARS?s Scientific Manuscript database

This presentation provides an update to ginning industry stakeholders on current research efforts ongoing at the three USDA ARS ginning laboratories in Lubbock, TX, Stoneville, MS, and Mesilla Park, NM....

Combined Effects of Lanthanum (III) and Acid Rain on Antioxidant Enzyme System in Soybean Roots.

PubMed

Zhang, Xuanbo; Du, Yuping; Wang, Lihong; Zhou, Qing; Huang, Xiaohua; Sun, Zhaoguo

2015-01-01

Rare earth element pollution (REEs) and acid rain (AR) pollution simultaneously occur in many regions, which resulted in a new environmental issue, the combined pollution of REEs and AR. The effects of the combined pollution on the antioxidant enzyme system of plant roots have not been reported. Here, the combined effects of lanthanum ion (La3+), one type of REE, and AR on the antioxidant enzyme system of soybean roots were investigated. In the combined treatment of La3+ (0.08 mM) and AR, the cell membrane permeability and the peroxidation of cell membrane lipid of soybean roots increased, and the superoxide dismutase, catalase, peroxidase and reduced ascorbic acid served as scavengers of reactive oxygen species. In other combined treatments of La3+ (0.40 mM, 1.20 mM) and AR, the membrane permeability, malonyldialdehyde content, superoxide dismutase activity, peroxidase activity and reduced ascorbic acid content increased, while the catalase activity decreased. The increased superoxide dismutase activity, peroxidase activity and reduced ascorbic acid content were inadequate to scavenge the excess hydrogen peroxide and superoxide, leading to the damage of the cell membrane, which was aggravated with the increase in the concentration of La3+ and the level of AR. The deleterious effects of the combined treatment of La3+ and AR were stronger than those of the single treatment of La3+ or AR. Moreover, the activity of antioxidant enzyme system in the combined treatment group was affected directly and indirectly by mineral element content in soybean plants.

Combined Effects of Lanthanum (III) and Acid Rain on Antioxidant Enzyme System in Soybean Roots

PubMed Central

Zhang, Xuanbo; Du, Yuping; Wang, Lihong; Zhou, Qing; Huang, Xiaohua; Sun, Zhaoguo

2015-01-01

Rare earth element pollution (REEs) and acid rain (AR) pollution simultaneously occur in many regions, which resulted in a new environmental issue, the combined pollution of REEs and AR. The effects of the combined pollution on the antioxidant enzyme system of plant roots have not been reported. Here, the combined effects of lanthanum ion (La3+), one type of REE, and AR on the antioxidant enzyme system of soybean roots were investigated. In the combined treatment of La3+ (0.08 mM) and AR, the cell membrane permeability and the peroxidation of cell membrane lipid of soybean roots increased, and the superoxide dismutase, catalase, peroxidase and reduced ascorbic acid served as scavengers of reactive oxygen species. In other combined treatments of La3+ (0.40 mM, 1.20 mM) and AR, the membrane permeability, malonyldialdehyde content, superoxide dismutase activity, peroxidase activity and reduced ascorbic acid content increased, while the catalase activity decreased. The increased superoxide dismutase activity, peroxidase activity and reduced ascorbic acid content were inadequate to scavenge the excess hydrogen peroxide and superoxide, leading to the damage of the cell membrane, which was aggravated with the increase in the concentration of La3+ and the level of AR. The deleterious effects of the combined treatment of La3+ and AR were stronger than those of the single treatment of La3+ or AR. Moreover, the activity of antioxidant enzyme system in the combined treatment group was affected directly and indirectly by mineral element content in soybean plants. PMID:26230263

Tn5-Mob transposon mediated transfer of salt tolerance and symbiotic characteristics between Rhizobia genera.

PubMed

Yang, S; Wu, Z; Gao, W; Li, J

1993-01-01

Rhizobium meliloti 042B is a fast-growing, salt-tolerant and high efficiency nitrogen-fixing symbiont with alfalfa. Bradyrhizobium japonicum USDA110 grows slowly, and cannot grow in YMA medium containing 0.1M NaCl, but nodulates and fixed nitrogen efficiently with soybean. Eighty-six transconjugants, called SR, were obtained by inserting Tn5-Mob randomly into genomes of 042B using pSUP5011 and helper plasmid RP4. Selecting 4 SR strains randomly and introducing DNA fragment of SR into USDA110 with helper plasmid R68.45 by triparental mating, 106 transconjugants, called BSR, were constructed. Most of BSR strains had the fast-growing phenotype and could tolerate 0.3-0.5M NaCl generally. Some of them produced melanine. When soybean and alfalfa were inoculated with these transconjugants BSR, 47 out of 90 BSR were found to nodulate in both of these plants, but no nitrogenase activity was observed with alfalfa; 26 strains could only nodulate and fix nitrogen in soybean; 13 strains could nodulate in alfalfa but did not fix nitrogen; 4 strains failed to nodulate in either soybean or alfalfa. Among them, 4 transconjugants which tolerated and fixed nitrogen efficiently in soybean were constructed.

Citrus scion breeding at the USDA/ARS U.S. Horticultural Research Laboratory

USDA-ARS?s Scientific Manuscript database

Citrus breeding has been conducted by the USDA since 1893 when Walter Swingle made the first crosses at the USDA Subtropical Laboratory in Eustis, Florida. The initial objectives included improved disease-resistance, cold hardiness, and easy peeling fruit, which are still important breeding objecti...

The United States Department Of Agriculture Northeast Area-wide Tick Control Project: history and protocol.

PubMed

Pound, Joe Mathews; Miller, John Allen; George, John E; Fish, Durland

2009-08-01

The Northeast Area-wide Tick Control Project (NEATCP) was funded by the United States Department of Agriculture (USDA) as a large-scale cooperative demonstration project of the USDA-Agricultural Research Service (ARS)-patented 4-Poster tick control technology (Pound et al. 1994) involving the USDA-ARS and a consortium of universities, state agencies, and a consulting firm at research locations in the five states of Connecticut (CT), Maryland (MD), New Jersey (NJ), New York (NY), and Rhode Island (RI). The stated objective of the project was "A community-based field trial of ARS-patented tick control technology designed to reduce the risk of Lyme disease in northeastern states." Here we relate the rationale and history of the technology, a chronological listing of events leading to implementation of the project, the original protocol for selecting treatment, and control sites, and protocols for deployment of treatments, sampling, assays, data analyses, and estimates of efficacy.

Regional services in a research context: USDA Climate Hubs in the USDA Agricultural Research Service

USDA-ARS?s Scientific Manuscript database

Ten USDA Climate Hubs were created in 2014 to develop and deliver science-based, region-specific information and technologies to better enable agricultural decision-making and management. Of these ten Hubs, half are administered by USDA’s Agricultural Research Service (ARS), an agency with historica...

The Creation and Role of the USDA Biomass Research Centers

Treesearch

William F. Anderson; Jeffery Steiner; Randy Raper; Ken Vogel; Terry Coffelt; Brenton Sharratt; Bob Rummer; Robert L. Deal; Alan Rudie

2011-01-01

The Five USDA Biomass Research Centers were created to facilitate coordinated research to enhance the establishment of a sustainable feedstock production for bio-based renewable energy in the United States. Scientists and staff of the Agricultural Research Service (ARS) and Forest Service (FS) within USDA collaborate with other federal agencies, universities and...

Soybean Genetics

USDA-ARS?s Scientific Manuscript database

Soybean genetics is a broad area encompassing all aspects, such as qualitative genetics, molecular genetics, etc. The objective of this book chapter was to include information that could be used for soybean improvement, and to summarize the current status of soybean genomics. Soybean germplasm is ...

Seed collection success and failure in fraxinus gene conservation efforts

Treesearch

Joseph D. Zeleznik; Andrew J. David

2017-01-01

National seed collection and gene conservation programs have expanded in recent years, especially in response to pressure from non-native pests such as the emerald ash borer (Agrilus planipennis). Since 2008, we have been working with the U.S. Department of Agriculture Agricultural Research Service (USDA ARS) and USDA Forest Service (USDA FS) leading seed collection...

Biological and Cultural Control of Olive Fruit Fly in California---Utilization of Parasitoids from USDA-APHIS-PPQ, Guatemala and Cultural Control Methods

USDA-ARS?s Scientific Manuscript database

The parasitoid Psytallia humilis = P. cf. concolor (Szépligeti) was reared on sterile Mediterranean fruit fly, Ceratitis capitata (Wiedemann), larvae at the USDA, APHIS, PPQ, Moscamed biological control laboratory in San Miguel Petapa, Guatemala and shipped to the USDA, ARS, Parlier, for biological ...

7 CFR 504.5 - Address.

Code of Federal Regulations, 2010 CFR

2010-01-01

... USER FEES § 504.5 Address. Deposits of and requests for microbial patent cultures should be directed to the Curator, ARS Patent Culture Collection, Northern Regional Research Center, USDA-ARS, 1815 N...

Genetic diversity among Angus, American Brahman, Senepol and Romosinuano cattle breeds.

PubMed

Brenneman, R A; Chase, C C; Olson, T A; Riley, D G; Coleman, S W

2007-02-01

The objective of this study was to quantify the genetic diversity among breeds under evaluation for tropical adaptability traits that affect the performance of beef cattle at the USDA/ARS SubTropical Agricultural Research Station (STARS) near Brooksville, FL, USA. Twenty-six microsatellite loci were used to estimate parameters of genetic diversity among the breeds American Brahman, Angus, Senepol and Romosinuano; the latter was comprised of two distinct bloodlines (Costa Rican and Venezuelan). Genotypes of 47 animals from each of these STARS herds were analysed for genetic diversity and genetic distance. Using two methods, the greatest genetic distance was detected between the Costa Rican line of Romosinuano and the Senepol. Gene diversity ranged between 0.64 (Costa Rican line of Romosinuano) and 0.75 (American Brahman). The breed relationship inferences, which are based on genetic distance, provide additional tools for consideration in future crossbreeding studies and for testing the relationship between quantified breed diversity and observed heterosis.

Biological and Cultural Control of Olive Fruit Fly in California---Utilization of Parasitoids from USDA-APHIS-PPQ, Guatemala

USDA-ARS?s Scientific Manuscript database

The parasitoid Psytallia cf. concolor (Szépligeti) was reared on sterile Mediterranean fruit fly larvae at the USDA-APHIS-PPQ, Petapa Quarantine Laboratory in Guatemala and shipped to the USDA-ARS, Parlier, for wide-spread release and biological control of olive fruit fly in California. As many as 3...

Low Phosphorus Diet: Best for Kidney Disease?

MedlinePlus

... for Standard Reference, Release 27. U.S. Department of Agriculture, Agriculture Research Service. http://ndb.nal.usda.gov. Accessed ... in America, NHANES 2011-2012. U.S. Department of Agriculture. http://www.ars.usda.gov/SP2UserFiles/Place/80400530/ ...

USDA dietary supplement ingredient database, release 2

USDA-ARS?s Scientific Manuscript database

The Nutrient Data Laboratory (NDL),Beltsville Human Nutrition Research Center (BHNRC), Agricultural Research Service (ARS), USDA, in collaboration with the Office of Dietary Supplements, National Institutes of Health (ODS/NIH) and other federal agencies has developed a Dietary Supplement Ingredient ...

76 FR 71583 - Notice of Availability of Finding of No Significant Impact for Field Release of Insects for...

Federal Register 2010, 2011, 2012, 2013, 2014

2011-11-18

.... ARS Biological Control Research The USDA Agricultural Research Service (ARS) is conducting research... agreement, CBP plans to provide funding and other support to ARS through fiscal years 2012 and 2013 for... take the form of agreements regarding the locations where ARS will release the Arundo wasp and Arundo...

7 CFR 504.5 - Address.

Code of Federal Regulations, 2014 CFR

2014-01-01

... the Curator, ARS Patent Culture Collection, Northern Regional Research Center, USDA-ARS, 1815 N. University St., Peoria, Illinois 61604; (309) 685-4011. ... of the Department of Agriculture (Continued) AGRICULTURAL RESEARCH SERVICE, DEPARTMENT OF AGRICULTURE...

7 CFR 504.5 - Address.

Code of Federal Regulations, 2011 CFR

2011-01-01

... the Curator, ARS Patent Culture Collection, Northern Regional Research Center, USDA-ARS, 1815 N. University St., Peoria, Illinois 61604; (309) 685-4011. ... of the Department of Agriculture (Continued) AGRICULTURAL RESEARCH SERVICE, DEPARTMENT OF AGRICULTURE...

7 CFR 504.5 - Address.

Code of Federal Regulations, 2013 CFR

2013-01-01

... the Curator, ARS Patent Culture Collection, Northern Regional Research Center, USDA-ARS, 1815 N. University St., Peoria, Illinois 61604; (309) 685-4011. ... of the Department of Agriculture (Continued) AGRICULTURAL RESEARCH SERVICE, DEPARTMENT OF AGRICULTURE...

7 CFR 504.5 - Address.

Code of Federal Regulations, 2012 CFR

2012-01-01

... the Curator, ARS Patent Culture Collection, Northern Regional Research Center, USDA-ARS, 1815 N. University St., Peoria, Illinois 61604; (309) 685-4011. ... of the Department of Agriculture (Continued) AGRICULTURAL RESEARCH SERVICE, DEPARTMENT OF AGRICULTURE...

The Rj4 allele in soybean represses nodulation by chlorosis-inducing bradyrhizobia classified as DNA homology group II by antibiotic resistance profiles.

PubMed

Devine, T E; Kuykendall, L D; O'Neill, J J

1990-07-01

To determine the relationship between nodulation restriction by the Rj4 allele of soybean, rhizobitoxine-induced chlorosis, and taxonomic grouping of bradyrhizobia, 119 bradyrhizobial isolates were tested in Leonard jar culture for nodulation response and chlorosis induction. In addition to strain USDA 61, the strain originally reported as defining the Rj4 response, eight other isolates (i.e., USDA 62, 83, 94, 238, 252, 259, 260, and 340) were discovered to elicit the nodulation interdiction of the Rj4 allele. Only 16% of all the bradyrhizobial strains tested induced chlorosis, but seven of the nine strains (78%) interdicted by the Rj4 allele were chlorosis-inducing strains. Furthermore, in tests for antibiotic resistance profile, eight of the nine interdicted strains (89%) were classed in DNA homology group II. This evidence suggests that the Rj4 allele has a positive value to the host plant in shielding it from nodulation by certain chlorosis-inducing bradyrhizobia of a DNA homology group with impaired efficiency of nitrogen fixation with soybean.

Shell Eggs from Farm to Table

MedlinePlus

... Safety and Inspection Service (FSIS), Agricultural Research Service (ARS), and the Animal and Plant Health Inspection Service ( ... get this information to consumers. Agricultural Research Service (ARS) USDA also carries out food safety research through ...

Food and Nutrition Information Center

MedlinePlus

... Nutrition Information Center Microgreen Study Shows Health Benefits •ARS scientists studied health benefits of red cabbage microgreens.• ... List USDA Food Composition Databases Agricultural Research Service (ARS) Food and Nutrition Research Briefs Interactive DRI for ...

7 CFR 504.4 - Exemptions from user fee charges.

Code of Federal Regulations, 2012 CFR

2012-01-01

... OF AGRICULTURE USER FEES § 504.4 Exemptions from user fee charges. (a) USDA laboratories and ARS cooperators designated by the Curator of the ARS Patent Culture Collection are exempt from fee assessments. (b) The Curator of the ARS Patent Culture Collection is delegated the authority to approve and revoke...

7 CFR 504.4 - Exemptions from user fee charges.

Code of Federal Regulations, 2013 CFR

2013-01-01

... OF AGRICULTURE USER FEES § 504.4 Exemptions from user fee charges. (a) USDA laboratories and ARS cooperators designated by the Curator of the ARS Patent Culture Collection are exempt from fee assessments. (b) The Curator of the ARS Patent Culture Collection is delegated the authority to approve and revoke...

7 CFR 504.4 - Exemptions from user fee charges.

Code of Federal Regulations, 2010 CFR

2010-01-01

... OF AGRICULTURE USER FEES § 504.4 Exemptions from user fee charges. (a) USDA laboratories and ARS cooperators designated by the Curator of the ARS Patent Culture Collection are exempt from fee assessments. (b) The Curator of the ARS Patent Culture Collection is delegated the authority to approve and revoke...

7 CFR 504.4 - Exemptions from user fee charges.

Code of Federal Regulations, 2011 CFR

2011-01-01

... OF AGRICULTURE USER FEES § 504.4 Exemptions from user fee charges. (a) USDA laboratories and ARS cooperators designated by the Curator of the ARS Patent Culture Collection are exempt from fee assessments. (b) The Curator of the ARS Patent Culture Collection is delegated the authority to approve and revoke...

7 CFR 504.4 - Exemptions from user fee charges.

Code of Federal Regulations, 2014 CFR

2014-01-01

... OF AGRICULTURE USER FEES § 504.4 Exemptions from user fee charges. (a) USDA laboratories and ARS cooperators designated by the Curator of the ARS Patent Culture Collection are exempt from fee assessments. (b) The Curator of the ARS Patent Culture Collection is delegated the authority to approve and revoke...

Science from the field to your shopping cart

USDA-ARS?s Scientific Manuscript database

Today the Agricultural Research Service (ARS), the in-house research division of USDA, has 2,100 scientists and 6,000 support personnel in over 90 locations throughout the US. The research done by ARS affects everyone in the country every day of the year. ARS research has gone into practically every...

Introduction to HACCP.

USDA-ARS?s Scientific Manuscript database

Introduction to HACCP Deana R. Jones, Ph.D. Egg Safety and Quality Research Unit USDA-Agricultural Research Service Russell Research Center Athens, GA Deana.Jones@ars.usda.gov HACCP is an acronym for Hazard Analysis and Critical Control Point and was initially developed by the Pillsbury Company a...

Food Crystalization and Eggs

USDA-ARS?s Scientific Manuscript database

Food Crystalization and Eggs Deana R. Jones, Ph.D. USDA Agricultural Research Service Egg Safety and Quality Research Unit Athens, Georgia, USA Deana.Jones@ars.usda.gov Sugar, salt, lactose, tartaric acid and ice are examples of constituents than can crystallize in foods. Crystallization in a foo...

High-quality permanent draft genome sequence of the Bradyrhizobium elkanii type strain USDA 76T, isolated from Glycine max (L.) Merr

DOE PAGES

Reeve, Wayne; van Berkum, Peter; Ardley, Julie; ...

2017-03-04

Bradyrhizobium elkanii USDA 76 T (INSCD = ARAG00000000), the type strain for Bradyrhizobium elkanii, is an aerobic, motile, Gram-negative, non-spore-forming rod that was isolated from an effective nitrogen-fixing root nodule of Glycine max (L. Merr) grown in the USA. Because of its significance as a microsymbiont of this economically important legume, B. elkanii USDA 76 T was selected as part of the DOE Joint Genome Institute 2010 Genomic Encyclopedia for Bacteria and Archaea-Root Nodule Bacteria sequencing project. Here the symbiotic abilities of B. elkanii USDA 76 T are described, together with its genome sequence information and annotation. The 9,484,767 bpmore » high-quality draft genome is arranged in 2 scaffolds of 25 contigs, containing 9060 protein-coding genes and 91 RNA-only encoding genes. The B. elkanii USDA 76 T genome contains a low GC content region with symbiotic nod and fix genes, indicating the presence of a symbiotic island integration. A comparison of five B. elkanii genomes that formed a clique revealed that 356 of the 9060 protein coding genes of USDA 76 T were unique, including 22 genes of an intact resident prophage. A conserved set of 7556 genes were also identified for this species, including genes encoding a general secretion pathway as well as type II, III, IV and VI secretion system proteins. The type III secretion system has previously been characterized as a host determinant for Rj and/or rj soybean cultivars. Here we show that the USDA 76 T genome contains genes encoding all the type III secretion system components, including a translocon complex protein NopX required for the introduction of effector proteins into host cells. While many bradyrhizobial strains are unable to nodulate the soybean cultivar Clark (rj1), USDA 76 T was able to elicit nodules on Clark (rj1), although in reduced numbers, when plants were grown in Leonard jars containing sand or vermiculite. In these conditions, we postulate that the presence of NopX allows USDA 76 T to introduce various effector molecules into this host to enable nodulation.« less

High-quality permanent draft genome sequence of the Bradyrhizobium elkanii type strain USDA 76T, isolated from Glycine max (L.) Merr

DOE Office of Scientific and Technical Information (OSTI.GOV)

Reeve, Wayne; van Berkum, Peter; Ardley, Julie

Bradyrhizobium elkanii USDA 76 T (INSCD = ARAG00000000), the type strain for Bradyrhizobium elkanii, is an aerobic, motile, Gram-negative, non-spore-forming rod that was isolated from an effective nitrogen-fixing root nodule of Glycine max (L. Merr) grown in the USA. Because of its significance as a microsymbiont of this economically important legume, B. elkanii USDA 76 T was selected as part of the DOE Joint Genome Institute 2010 Genomic Encyclopedia for Bacteria and Archaea-Root Nodule Bacteria sequencing project. Here the symbiotic abilities of B. elkanii USDA 76 T are described, together with its genome sequence information and annotation. The 9,484,767 bpmore » high-quality draft genome is arranged in 2 scaffolds of 25 contigs, containing 9060 protein-coding genes and 91 RNA-only encoding genes. The B. elkanii USDA 76 T genome contains a low GC content region with symbiotic nod and fix genes, indicating the presence of a symbiotic island integration. A comparison of five B. elkanii genomes that formed a clique revealed that 356 of the 9060 protein coding genes of USDA 76 T were unique, including 22 genes of an intact resident prophage. A conserved set of 7556 genes were also identified for this species, including genes encoding a general secretion pathway as well as type II, III, IV and VI secretion system proteins. The type III secretion system has previously been characterized as a host determinant for Rj and/or rj soybean cultivars. Here we show that the USDA 76 T genome contains genes encoding all the type III secretion system components, including a translocon complex protein NopX required for the introduction of effector proteins into host cells. While many bradyrhizobial strains are unable to nodulate the soybean cultivar Clark (rj1), USDA 76 T was able to elicit nodules on Clark (rj1), although in reduced numbers, when plants were grown in Leonard jars containing sand or vermiculite. In these conditions, we postulate that the presence of NopX allows USDA 76 T to introduce various effector molecules into this host to enable nodulation.« less

USDA, ARS Soft Wheat Quality Laboratory, Annual Report 2011

USDA-ARS?s Scientific Manuscript database

The report describes new activities for the lab including the a transitions in the laboratory and activites on the USDA, NIFA-funded Triticeae CAP project. Recent research on milling and quality evaluations, data management, molecular evaluations, stem rust resistance from the lab are highlighted, ...

Importance of tarnished plant bug as a USDA ARS research priority

USDA-ARS?s Scientific Manuscript database

Environmental and economic management of tarnished plant bug (TPB) (Lygus lineolaris) on cotton has been an area of continuous study by USDA scientists in Stoneville, Mississippi since the 1960s. Maintaining economically viable cotton production has required dynamic research information and increas...

76 FR 53397 - Notice of Intent To Renew Information Collection

Federal Register 2010, 2011, 2012, 2013, 2014

2011-08-26

...), Agricultural Research Service (ARS) seeks comments on the intent of the United States National Arboretum (USNA... consideration. ADDRESSES: You may submit comments by any of the following methods: E-mail: [email protected]ars... requests can be submitted in person or by mail to the Administrative Office, USDA, ARS, U.S. National...

7 CFR 510.2 - Public inspection, copying, and indexing.

Code of Federal Regulations, 2011 CFR

2011-01-01

.... Members of the public may request access to such materials maintained by ARS at the following office: Information Staff, ARS, REE, USDA, Room 1-2248, Mail Stop 5128, 5601 Sunnyside Avenue, Beltsville, MD 20705... 4:30 p.m. Information maintained in our electronic reading room can be accessed at http://www.ars...

77 FR 58802 - Notice of Intent To Seek OMB Approval To Collect Information: Forms Pertaining to the Peer Review...

Federal Register 2010, 2011, 2012, 2013, 2014

2012-09-24

... Collect Information: Forms Pertaining to the Peer Review of ARS Research Projects AGENCY: Agricultural Research Service (ARS), USDA. ACTION: Notice and request for comments. SUMMARY: The proposed information... allow the ARS to efficiently manage data associated with the peer review of agricultural research. All...

7 CFR 510.2 - Public inspection, copying, and indexing.

Code of Federal Regulations, 2010 CFR

2010-01-01

.... Members of the public may request access to such materials maintained by ARS at the following office: Information Staff, ARS, REE, USDA, Room 1-2248, Mail Stop 5128, 5601 Sunnyside Avenue, Beltsville, MD 20705... 4:30 p.m. Information maintained in our electronic reading room can be accessed at http://www.ars...

7 CFR 510.2 - Public inspection, copying, and indexing.

Code of Federal Regulations, 2012 CFR

2012-01-01

.... Members of the public may request access to such materials maintained by ARS at the following office: Information Staff, ARS, REE, USDA, Room 1-2248, Mail Stop 5128, 5601 Sunnyside Avenue, Beltsville, MD 20705... 4:30 p.m. Information maintained in our electronic reading room can be accessed at http://www.ars...

7 CFR 510.2 - Public inspection, copying, and indexing.

Code of Federal Regulations, 2013 CFR

2013-01-01

.... Members of the public may request access to such materials maintained by ARS at the following office: Information Staff, ARS, REE, USDA, Room 1-2248, Mail Stop 5128, 5601 Sunnyside Avenue, Beltsville, MD 20705... 4:30 p.m. Information maintained in our electronic reading room can be accessed at http://www.ars...

7 CFR 510.2 - Public inspection, copying, and indexing.

Code of Federal Regulations, 2014 CFR

2014-01-01

.... Members of the public may request access to such materials maintained by ARS at the following office: Information Staff, ARS, REE, USDA, Room 1-2248, Mail Stop 5128, 5601 Sunnyside Avenue, Beltsville, MD 20705... 4:30 p.m. Information maintained in our electronic reading room can be accessed at http://www.ars...

7 CFR 3701.2 - Public inspection, copying, and indexing.

Code of Federal Regulations, 2010 CFR

2010-01-01

...: Information Staff, ARS, REE, USDA, Room 1-2248, Mail Stop 5128, 5601 Sunnyside Avenue, Beltsville, MD 20705... 4:30 p.m. Information maintained in our electronic reading room can be accessed at http://www.ars...

7 CFR 3601.2 - Public inspection, copying, and indexing.

Code of Federal Regulations, 2011 CFR

2011-01-01

...: Information Staff, ARS, REE, USDA, Room 1-2248, Mail Stop 5128, 5601 Sunnyside Avenue, Beltsville, MD 20705... 4:30 p.m. Information maintained in our electronic reading room can be accessed at http://www.ars...

7 CFR 3601.2 - Public inspection, copying, and indexing.

Code of Federal Regulations, 2013 CFR

2013-01-01

...: Information Staff, ARS, REE, USDA, Room 1-2248, Mail Stop 5128, 5601 Sunnyside Avenue, Beltsville, MD 20705... 4:30 p.m. Information maintained in our electronic reading room can be accessed at http://www.ars...

7 CFR 3601.2 - Public inspection, copying, and indexing.

Code of Federal Regulations, 2010 CFR

2010-01-01

...: Information Staff, ARS, REE, USDA, Room 1-2248, Mail Stop 5128, 5601 Sunnyside Avenue, Beltsville, MD 20705... 4:30 p.m. Information maintained in our electronic reading room can be accessed at http://www.ars...

7 CFR 3701.2 - Public inspection, copying, and indexing.

Code of Federal Regulations, 2013 CFR

2013-01-01

...: Information Staff, ARS, REE, USDA, Room 1-2248, Mail Stop 5128, 5601 Sunnyside Avenue, Beltsville, MD 20705... 4:30 p.m. Information maintained in our electronic reading room can be accessed at http://www.ars...

7 CFR 3601.2 - Public inspection, copying, and indexing.

Code of Federal Regulations, 2014 CFR

2014-01-01

...: Information Staff, ARS, REE, USDA, Room 1-2248, Mail Stop 5128, 5601 Sunnyside Avenue, Beltsville, MD 20705... 4:30 p.m. Information maintained in our electronic reading room can be accessed at http://www.ars...

7 CFR 3701.2 - Public inspection, copying, and indexing.

Code of Federal Regulations, 2012 CFR

2012-01-01

...: Information Staff, ARS, REE, USDA, Room 1-2248, Mail Stop 5128, 5601 Sunnyside Avenue, Beltsville, MD 20705... 4:30 p.m. Information maintained in our electronic reading room can be accessed at http://www.ars...

7 CFR 3701.2 - Public inspection, copying, and indexing.

Code of Federal Regulations, 2014 CFR

2014-01-01

...: Information Staff, ARS, REE, USDA, Room 1-2248, Mail Stop 5128, 5601 Sunnyside Avenue, Beltsville, MD 20705... 4:30 p.m. Information maintained in our electronic reading room can be accessed at http://www.ars...

7 CFR 3601.2 - Public inspection, copying, and indexing.

Code of Federal Regulations, 2012 CFR

2012-01-01

...: Information Staff, ARS, REE, USDA, Room 1-2248, Mail Stop 5128, 5601 Sunnyside Avenue, Beltsville, MD 20705... 4:30 p.m. Information maintained in our electronic reading room can be accessed at http://www.ars...

7 CFR 3701.2 - Public inspection, copying, and indexing.

Code of Federal Regulations, 2011 CFR

2011-01-01

...: Information Staff, ARS, REE, USDA, Room 1-2248, Mail Stop 5128, 5601 Sunnyside Avenue, Beltsville, MD 20705... 4:30 p.m. Information maintained in our electronic reading room can be accessed at http://www.ars...

History and Accomplishments of USDA-ARS Avian Disease and Oncology Laboratory

USDA-ARS?s Scientific Manuscript database

The USDA-Agricultural Research Service Avian Disease and Oncology Laboratory (ADOL) in East Lansing, Michigan, formerly known as Regional Poultry Research Laboratory, was dedicated on August 8, 1939. Its establishment was the result of joint efforts by the Agricultural Experiment Stations of the Nor...

The creation and role of the USDA biomass research centers

USDA-ARS?s Scientific Manuscript database

The Five USDA Biomass Research Centers were created to facilitate coordinated research to enhance the establishment of a sustainable feedstock production for bio-based renewable energy in the United States. Scientists and staff of the Agriculture Research Service (ARS) and Forest Service (FS) withi...

USDA Research in Support of Deployed Military Troops

USDA-ARS?s Scientific Manuscript database

The US Department of Agriculture has a long history of collaborating with the US military to conduct research in support of war efforts. The predecessor laboratory of the current USDA-ARS Center for Medical, Agricultural and Veterinary Entomology (CMAVE) located in Gainesville, Florida has a history...

Validation of the Soil Moisture Active Passive mission using USDA-ARS experimental watersheds

USDA-ARS?s Scientific Manuscript database

The calibration and validation program of the Soil Moisture Active Passive mission (SMAP) relies upon an international cooperative of in situ networks to provide ground truth references across a variety of landscapes. The USDA Agricultural Research Service operates several experimental watersheds wh...

75 FR 18472 - Notice of Intent to Seek Approval To Collect Information

Federal Register 2010, 2011, 2012, 2013, 2014

2010-04-12

... to [email protected]ars.usda.gov . FOR FURTHER INFORMATION CONTACT: Tara Smith, telephone (301) 504-5515... E. Rexroad, Jr., Associate Administrator, ARS. [FR Doc. 2010-8258 Filed 4-9-10; 8:45 am] BILLING...

78 FR 26612 - Notice of Intent To Seek Approval To Conduct an Information Collection

Federal Register 2010, 2011, 2012, 2013, 2014

2013-05-07

... States Wheat and Barley Scab Initiative which is funded by USDA's Agricultural Research Service (ARS... first survey and funding. Furthermore, ARS will be able to use the data from this survey to determine...

USDA Memorandum of Understanding Signing

NASA Image and Video Library

2008-07-22

U.S. Senator Kay Bailey Hutchison, R-Texas looks on as Secretary of Agriculture Ed Schafer, left, shakes hands with NASA Administrator Michael Griffin after signing a memorandum of understanding (MOU) between NASA and USDA Wednesday, July 23, 2008, at the Russell Senate Office Building in Washington. The MOU will enable the USDA's Agricultural Research Service (ARS) to conduct plant and animal related research on the International Space Station (ISS). Photo Credit: (NASA/Bill Ingalls)

Introduction to the USDA-Agricultural Research Service Poisonous Plant Research Laboratory Special Rangelands Issue

USDA-ARS?s Scientific Manuscript database

The USDA-ARS Poisonous Plant Research Labortory (PPRL) in Logan, UT will sponsor an edition of the magazine Rangelands. This paper provides a brief history and overview of the PPRL, mission statement, research objectives by CRIS, and the disciplines involved in the research....

High-impact animal health research conducted at the USDA's National Animal Disease Center

USDA-ARS?s Scientific Manuscript database

Commissioned by President Dwight Eisenhower in 1958 and opened with a dedication ceremony in December 1961, the USDA, Agricultural Research Service (ARS), National Animal Disease Center (NADC) celebrated its 50-year anniversary in November 2011. Over these 50 years, the NADC established itself amon...

Compendium of fruit fly host information (CoFFHI), edition 3.0

USDA-ARS?s Scientific Manuscript database

The Compendium of Fruit Fly Host Information (CoFFHI), edition 3.0 (available at: https://coffhi.cphst.org/), developed through collaborative efforts of scientists in USDA-APHIS, USDA-ARS, and the Center for Integrated Pest Management (CIPM) of North Carolina State University (NCSU), provides centra...

Model development and applications at the USDA-ARS National Soil Erosion Research Laboratory

USDA-ARS?s Scientific Manuscript database

The United States Department of Agriculture (USDA) has a long history of development of soil erosion prediction technology, initially with empirical equations like the Universal Soil Loss Equation (USLE), and more recently with process-based models such as the Water Erosion Prediction Project (WEPP)...

Compendium of fruit fly host information (CoFFHI), edition 2.0

USDA-ARS?s Scientific Manuscript database

The Compendium of Fruit Fly Host Information (CoFFHI), edition 2.0, developed through collaborative efforts of scientists in USDA-APHIS, USDA-ARS, and the Center for Integrated Pest Management (CIPM) of North Carolina State University (NCSU), provides centralized online documentation of what is know...

'Recovery', a new western wheatgrass cultivar with improved seedling establishment on rangelands

USDA-ARS?s Scientific Manuscript database

'Recovery' western wheatgrass (Pascopyrum smithii [Rydb.] A. Love) (Reg. No. CV-_____, PI ______) was released in December 2009 by the USDA-ARS, the U.S. Army Corps of Engineers-Engineer Research and Development Center, and the USDA-NRCS. Recovery was developed for reseedling rangelands following s...

USDA Agricultural Research Service creates Nutrient Uptake and Outcome Network (NUOnet)

USDA-ARS?s Scientific Manuscript database

One of the national goals of USDA-ARS is to conduct research that develops new practices and methods to increase agricultural production and quality with sustainable systems that have a lower environmental impact. When completed, the new NUOnet database system will be able to help in the establishme...

Integrated grassland observation sites and integrated cropland observation sites at El Reno, Oklahoma

USDA-ARS?s Scientific Manuscript database

With the financial support from the National Science Foundation and the USDA National Institute of Food and Agriculture, a team of researchers from the University of Oklahoma and the USDA ARS Grazinglands Research Laboratory have worked together and established two Integrated Grassland Observation s...

Program review of the USDA Center for Medical, Agricultural and Veterinary Entomology

USDA-ARS?s Scientific Manuscript database

The USDA-ARS Center for Medical, Agricultural and Veterinary Entomology (CMAVE) has a history that starts in 1932 in Orlando to develop methods to control mosquitoes, including malaria vectors under conditions simulating those of the south Pacific jungles, and other insects affecting man and animals...

Regional services in a research context: USDA climate hubs in the agricultural research service

USDA-ARS?s Scientific Manuscript database

Ten USDA Climate Hubs were created in 2014 to develop and deliver science-based, region-specific information and technologies to better enable agricultural decision-making and management. Of these ten Hubs, half are administered by USDA’s Agricultural Research Service (ARS), an agency with historica...

Getting down the road (but not over the hill)

USDA-ARS?s Scientific Manuscript database

If success = job satisfaction, then I can personally say that my career with the USDA Agricultural Research Service (ARS) has been highly successful. This talk outlines the career options for scientists in ARS and how satisfactory that work is....

ARS labs update to California Cotton Ginners and Growers

USDA-ARS?s Scientific Manuscript database

There are four USDA-ARS labs involved in cotton harvesting, processing & fiber quality research; The Southwestern Cotton Ginning Research Laboratory (Mesilla Park, NM); The Cotton Production and Processing Unit (Lubbock, TX); The Cotton Ginning Research Unit (Stoneville, MS); and The Cotton Structur...

United States Department of Agriculture-Agricultural Research Service: advances in the molecular genetic analysis of insects and their application to pest management.

PubMed

Handler, Alfred M; Beeman, Richard W

2003-01-01

USDA-ARS scientists have made important contributions to the molecular genetic analysis of agriculturally important insects, and have been in the forefront of using this information for the development of new pest management strategies. Advances have been made in the identification and analysis of genetic systems involved in insect development, reproduction and behavior which enable the identification of new targets for control, as well as the development of highly specific insecticidal products. Other studies have been on the leading edge of developing gene transfer technology to better elucidate these biological processes though functional genomics and to develop new transgenic strains for biological control. Important contributions have also been made to the development and use of molecular markers and methodologies to identify and track insect populations. The use of molecular genetic technology and strategies will become increasingly important to pest management as genomic sequencing information becomes available from important pest insects, their targets and other associated organisms.

Cholesterol and vitamin D content of eggs in the U.S. retail market

USDA-ARS?s Scientific Manuscript database

Nationwide sampling in the U.S. of whole large eggs, to update values in the USDA National Nutrient Database for Standard Reference (SR) (http://www.ars.usda.gov/nutrientdata), was conducted in 2000-2001 and again in 2010. Retail cartons of large eggs were obtained from 12 supermarket locations usi...

New citrus rootstocks released by USDA 2001-2010: field performance and nursery characteristics

USDA-ARS?s Scientific Manuscript database

Four new citrus rootstocks developed by USDA, ARS and released between 2001 and 2010 have gained considerable commercial popularity in Florida and have been used for propagation of more than 2 million trees over the last two years. Trends in commercial use of these rootstocks are discussed. Results ...

Performance of Psyttalia humilis (Hymenoptera: Braconidae) reared from irradiated host on olive fruit fly (Diptera: Tephritidae) in California

USDA-ARS?s Scientific Manuscript database

The parasitoid Psytallia humilis (Silvestri) was reared on Mediterranean fruit fly, Ceratitis capitata (Wiedemann), larvae irradiated at different doses from 0-70 Gy at the USDA, APHIS, PPQ, Moscamed biological control laboratory in San Miguel Petapa, Guatemala and shipped to the USDA, ARS, Parlier,...

2008 Field Releases of Psyttalia cf. concolor for Biological Control of Olive Fruit Fly in California

USDA-ARS?s Scientific Manuscript database

The parasitoid Psytallia cf. concolor (Szépligeti) was reared on sterile Mediterranean fruit fly larvae at the USDA-APHIS-PPQ, Petapa Quarantine Laboratory in Guatemala and shipped to the USDA-ARS, Parlier for biological control of olive fruit fly, Bactrocera oleae (Gmelin), in California. Improved ...

Breeding citrus for HLB resistance at the USDA/ARS U.S. Horticultural Research Laboratory, Ft. Pierce, Florida

USDA-ARS?s Scientific Manuscript database

Citrus breeding has been conducted by the USDA since 1893. The initial objectives included improved disease-resistance, cold hardiness, and easy peeling fruit, which are still important breeding objectives today. The emergence of huanglongbing (HLB) in the US has propelled the development of HLB r...

A history of wind erosion prediction models in the United States Department of Agriculture: The Wind Erosion Prediction System (WEPS)

USDA-ARS?s Scientific Manuscript database

Development of the Wind Erosion Prediction System (WEPS) was officially inaugurated in 1985 by United States Department of Agriculture-Agricultural Research Service (USDA-ARS) scientists in response to customer requests, particularly those coming from the USDA Soil Conservation Service (SCS), for im...

Applications of UAV imagery for agricultural and environmental research at the USDA Southeast Watershed Research Lab

USDA-ARS?s Scientific Manuscript database

The ARS is the USDA's in-house scientific research agency, whose mission is to conduct research to "develop and transfer solutions to agricultural problems of high national priority..." This includes enhancing the natural resource base and the environment, a dimension of particular relevance to the ...

Environmental and Historical Determinants of Patterns of Genetic Differentiation in Wild Soybean (Glycine soja Sieb. et Zucc)

PubMed Central

He, Shui-Lian; Wang, Yun-Sheng; Li, De-Zhu; Yi, Ting-Shuang

2016-01-01

Wild soybean, the direct progenitor of cultivated soybean, inhabits a wide distribution range across the mainland of East Asia and the Japanese archipelago. A multidisciplinary approach combining analyses of population genetics based on 20 nuclear microsatellites and one plastid locus were applied to reveal the genetic variation of wild soybean, and the contributions of geographical, environmental factors and historic climatic change on its patterns of genetic differentiation. High genetic diversity and significant genetic differentiation were revealed in wild soybean. Wild soybean was inferred to be limited to southern and central China during the Last Glacial Maximum (LGM) and experienced large-scale post-LGM range expansion into northern East Asia. A substantial northward range shift has been predicted to occur by the 2080s. A stronger effect of isolation by environment (IBE) versus isolation by geographical distance (IBD) was found for genetic differentiation in wild soybean, which suggested that environmental factors were responsible for the adaptive eco-geographical differentiation. This study indicated that IBE and historical climatic change together shaped patterns of genetic variation and differentiation of wild soybean. Different conservation measures should be implemented on different populations according to their adaptive potential to future changes in climate and human-induced environmental changes. PMID:26952904

Relationship Between Soil Type and N2O Reductase Genotype (nosZ) of Indigenous Soybean Bradyrhizobia: nosZ-minus Populations are Dominant in Andosols

PubMed Central

Shiina, Yoko; Itakura, Manabu; Choi, Hyunseok; Saeki, Yuichi; Hayatsu, Masahito; Minamisawa, Kiwamu

2014-01-01

Bradyrhizobium japonicum strains that have the nosZ gene, which encodes N2O reductase, are able to mitigate N2O emissions from soils (15). To examine the distribution of nosZ genotypes among Japanese indigenous soybean bradyrhizobia, we isolated bradyrhizobia from the root nodules of soybean plants inoculated with 32 different soils and analyzed their nosZ and nodC genotypes. The 1556 resultant isolates were classified into the nosZ+/nodC+ genotype (855 isolates) and nosZ−/nodC+ genotype (701 isolates). The 11 soil samples in which nosZ− isolates significantly dominated (P < 0.05; the χ2 test) were all Andosols (a volcanic ash soil prevalent in agricultural fields in Japan), whereas the 17 soil samples in which nosZ+ isolates significantly dominated were mainly alluvial soils (non-volcanic ash soils). This result was supported by a principal component analysis of environmental factors: the dominance of the nosZ− genotype was positively correlated with total N, total C, and the phosphate absorption coefficient in the soils, which are soil properties typical of Andosols. Internal transcribed spacer sequencing of representative isolates showed that the nosZ+ and nosZ− isolates of B. japonicum fell mainly into the USDA110 (BJ1) and USDA6 (BJ2) groups, respectively. These results demonstrated that the group lacking nosZ was dominant in Andosols, which can be a target soil type for an N2O mitigation strategy in soybean fields. We herein discussed how the nosZ genotypes of soybean bradyrhizobia depended on soil types in terms of N2O respiration selection and genomic determinants for soil adaptation. PMID:25476067

Relationship between soil type and N₂O reductase genotype (nosZ) of indigenous soybean bradyrhizobia: nosZ-minus populations are dominant in Andosols.

PubMed

Shiina, Yoko; Itakura, Manabu; Choi, Hyunseok; Saeki, Yuichi; Hayatsu, Masahito; Minamisawa, Kiwamu

2014-01-01

Bradyrhizobium japonicum strains that have the nosZ gene, which encodes N2O reductase, are able to mitigate N2O emissions from soils (15). To examine the distribution of nosZ genotypes among Japanese indigenous soybean bradyrhizobia, we isolated bradyrhizobia from the root nodules of soybean plants inoculated with 32 different soils and analyzed their nosZ and nodC genotypes. The 1556 resultant isolates were classified into the nosZ+/nodC+ genotype (855 isolates) and nosZ-/nodC+ genotype (701 isolates). The 11 soil samples in which nosZ- isolates significantly dominated (P < 0.05; the χ(2) test) were all Andosols (a volcanic ash soil prevalent in agricultural fields in Japan), whereas the 17 soil samples in which nosZ+ isolates significantly dominated were mainly alluvial soils (non-volcanic ash soils). This result was supported by a principal component analysis of environmental factors: the dominance of the nosZ- genotype was positively correlated with total N, total C, and the phosphate absorption coefficient in the soils, which are soil properties typical of Andosols. Internal transcribed spacer sequencing of representative isolates showed that the nosZ+ and nosZ- isolates of B. japonicum fell mainly into the USDA110 (BJ1) and USDA6 (BJ2) groups, respectively. These results demonstrated that the group lacking nosZ was dominant in Andosols, which can be a target soil type for an N2O mitigation strategy in soybean fields. We herein discussed how the nosZ genotypes of soybean bradyrhizobia depended on soil types in terms of N2O respiration selection and genomic determinants for soil adaptation.

Melon Trait and Germplasm Resources Survey 2011

USDA-ARS?s Scientific Manuscript database

The Cucurbit Crop Germplasm Committee (CCGC), which operates under the auspices of the USDA-ARS National Plant Germplasm System (NPGS), is composed of ARS, university and industry scientists, and provides guidance to NPGS on matters relating to cucurbit crop and wild related species. The CCGC is res...

77 FR 46681 - Advisory Committee on Biotechnology and 21st Century Agriculture; Notice of Meeting

Federal Register 2010, 2011, 2012, 2013, 2014

2012-08-06

... Independence Avenue SW., Washington, DC 20250; Telephone (202) 720-3817; Fax (202) 690-4265; Email [email protected]ars...-4074 or by Email at [email protected]ars.usda.gov at least 5 days prior to the meeting. Please provide...

Dioxin, furan, PCB, and PBDE levels in U.S. foods: Survey trends and consumer exposure

USDA-ARS?s Scientific Manuscript database

The U.S. Department of Agriculture, Agricultural Research Service (USDA-ARS) and Food Safety and Inspection Service (USDA-FSIS) have conducted statistical surveys for dioxins (PCDDs, PCDFs, and PCBs) and polybrominated diphenyl ethers every 5 years since the mid-1990s (mid-1990s, 2002-3, 2007-8). I...

Field Performance and Fitness of an Olive Fruit Fly Parasitoid, Psyttalia humilis (Hymenoptera: Braconidae) mass reared on irradiated Medfly

USDA-ARS?s Scientific Manuscript database

Adult Psytallia cf. concolor (Szépligeti) (230,908) were produced from sterile Mediterranean fruit fly, Ceratitis capitata (Wiedemann), larvae at the USDA-APHIS-PPQ, San Miguel Petapa, Guatemala and shipped from September 2008 to January 2009 to the USDA-ARS, SJVASC, Parlier for biological control ...

Outcomes from the USDA/ARS area-wide project for management of the Asian tiger mosquito, Aedes albopictus

USDA-ARS?s Scientific Manuscript database

The Asian tiger mosquito, Aedes albopictus, became established in the continental US in 1985 and now infests 30 states. In 2007 the USDA Agricultural Research Service funded an “area-wide” project focused on the management of this species. The project was a unique federal, state, local collaborati...

[Impacts of genetically modified soybean leaf residues on Folsomia candida.

PubMed

Zhou, Lin; Wang, Bai Feng; Liu, Xin Ying; Jiang, Ying; Wang, Da Ming; Feng, Shu Dan; Song, Xin Yuan

2016-09-01

When the genetically modified soybean is planted in the field, the expression product of exogenous gene could be exposed in the soil ecosystem and bring potential risk to the soil fauna, with the form of leaves and other debris. A few of genetically modified soybeans developed by China independently were used in our study as materials. They were Phytophthora-resistant soybean harboring hrpZm gene (B4J8049), leaf-feeding insect-resistant soybean harboring Cry1C gene (A2A8001) and Leguminivora glycinivorella-resistant soybean harboring Cry1Iem gene (C802). By feeding Folsomia candida with the three genetically modified soybeans for continuous 60 days, the surviving rate, reproductive rate and changes on the body length of F. candida were studied. The results showed that all the three genetically modified soybeans of B4J8049, A2A8001 and C802 had no significant adverse effects on the growth of F. candida, as an environmental indicator organism. It was initially inferred that they were environmentally safe under short-term exposure, which provided basic data of ecological safety for their wide cultivation.

ADDING GLOBAL SOILS DATA TO THE AUTOMATED GEOSPATIAL WATERSHED ASSESSMENT TOOL (AGWA)

EPA Science Inventory

The Automated Geospatial Watershed Assessment Tool (AGWA) is a GIS-based hydrologic modeling tool that is available as an extension for ArcView 3.x from the USDA-ARS Southwest Watershed Research Center (www.tucson.ars.ag.gov/agwa). AGWA is designed to facilitate the assessment of...

US (ARS)-South African (UP) collaboration on combustion reduction integrated pyrolysis system (CRIP)

USDA-ARS?s Scientific Manuscript database

The Agricultural Research Service (ARS), the principal intramural research arm of the United States Department of Agriculture (USDA), and University of Pretoria, South Africa, have entered into a Non-funded Cooperative Research Agreement (NFCA) for 2 years (ending July 31, 2012) to develop an energy...

Presence of Russian honey bee genotypes in swarms in Louisiana.

USDA-ARS?s Scientific Manuscript database

Swarm traps were placed in an area around USDA, ARS apiaries near Baton Rouge, Louisiana, which had contained ARS Russian and other honey bees for several years. Eighty swarms were sampled and analyzed for their genotype (Russian, hybrid or non-Russian) and mite infestation percentages. Ten swarms...

Soil health, crop productivity, microbial transport, and mine spoil response to biochars

USDA-ARS?s Scientific Manuscript database

Biochar is being evaluated by scientists from the United States Department of Agriculture (USDA) Agricultural Research Service (ARS) for its potential to sequester soil C, to improve soil health, and to increase crop yields. ARS scientists from multiple locations such as Florence, SC, Kimberly, ID,...

Conservation of beneficial species and pest management

USDA-ARS?s Scientific Manuscript database

USDA, ARS scientists and staff at the satellite laboratory of CMAVE in Tallahassee, FL co-organized a vegetable field day with Florida A&M University (FAMU) faculty, staff and extension agents. The field days were held at the ARS and FAMU-Center for Viticulture and small fruit Research Integrated Pe...

Lack of galactose or galacturonic acid in Bradyrhizobium japonicum USDA 110 exopolysaccharide leads to different symbiotic responses in soybean.

PubMed

Quelas, Juan Ignacio; Mongiardini, Elías J; Casabuono, Adriana; López-García, Silvina L; Althabegoiti, M Julia; Covelli, Julieta M; Pérez-Giménez, Julieta; Couto, Alicia; Lodeiro, Aníbal R

2010-12-01

Exopolysaccharide (EPS) and lipopolysaccharide (LPS) from Bradyrhizobium japonicum are important for infection and nodulation of soybean (Glycine max), although their roles are not completely understood. To better understand this, we constructed mutants in B. japonicum USDA 110 impaired in galactose or galacturonic acid incorporation into the EPS without affecting the LPS. The derivative LP 3010 had a deletion of lspL-ugdH and produced EPS without galacturonic acid whereas LP 3013, with an insertion in exoB, produced EPS without galactose. In addition, the strain LP 3017, with both mutations, had EPS devoid of both galactosides. The missing galactosides were not replaced by other sugars. The defects in EPS had different consequences. LP 3010 formed biofilms and nodulated but was defective in competitiveness for nodulation; and, inside nodules, the peribacteroid membranes tended to fuse, leading to the merging of symbiosomes. Meanwhile, LP 3013 and LP 3017 were unable to form biofilms and produced empty pseudonodules but exoB suppressor mutants were obtained when LP 3013 plant inoculation was supplemented with wild-type EPS. Similar phenotypes were observed with all these mutants in G. soja. Therefore, the lack of each galactoside in the EPS has a different functional effect on the B. japonicum-soybean symbiosis.

Genetic variation in the USDA Chamaecrista fasciculata collection

USDA-ARS?s Scientific Manuscript database

Germplasm collections serve as critical repositories of genetic variation. Characterizing genetic diversity in existing collections is necessary to maximize their utility and to guide future collecting efforts. We have used AFLP markers to characterize genetic variation in the USDA germplasm collect...

National Site for the Regional IPM Centers

Science.gov Websites

Agriculture Quarantine Exemptions (Section 18s) Requests by date for SOYBEANS Initial Exemption Template Department of Agriculture - National Institute of Food and Agriculture Website managed by the Southern IPM the USDA National Institute of Food and Agriculture.

Heterodera glycines Population Development on Soybean Treated with Glyphosate

USDA-ARS?s Scientific Manuscript database

Soybean cyst nematode (Heterodera glycines) is a major yield limiting pest in all major soybean producing countries. In the last decade genetically modified soybean tolerant to glyphosate has become widely planted and postemergence application of glyphosate has increased exponentially. Genetically m...

Biological control of weeds: research by the United States Department of Agriculture-Agricultural Research Service: selected case studies.

PubMed

Quimby, Paul C; DeLoach, C Jack; Wineriter, Susan A; Goolsby, John A; Sobhian, Rouhollah; Boyette, C Douglas; Abbas, Hamed K

2003-01-01

Research by the USDA-Agricultural Research Service (ARS) on biological control of weeds has been practiced for many years because of its inherent ecological and economic advantages. Today, it is further driven by ARS adherence to Presidential Executive Order 13112 (3 February 1999) on invasive species and to USDA-ARS policy toward developing technology in support of sustainable agriculture with reduced dependence on non-renewable petrochemical resources. This paper reports examples or case studies selected to demonstrate the traditional or classical approach for biological control programs using Old World arthropods against Tamarix spp, Melaleuca quinquenervia (Cav) ST Blake and Galium spurium L/G aparine L, and the augmentative approach with a native plant pathogen against Pueraria lobata Ohwi = P montana. The examples illustrated various conflicts of interest with endangered species and ecological complexities of arthropods with associated microbes such as nematodes.

Mitigation of soil N2O emission by inoculation with a mixed culture of indigenous Bradyrhizobium diazoefficiens

NASA Astrophysics Data System (ADS)

Akiyama, Hiroko; Hoshino, Yuko Takada; Itakura, Manabu; Shimomura, Yumi; Wang, Yong; Yamamoto, Akinori; Tago, Kanako; Nakajima, Yasuhiro; Minamisawa, Kiwamu; Hayatsu, Masahito

2016-09-01

Agricultural soil is the largest source of nitrous oxide (N2O), a greenhouse gas. Soybean is an important leguminous crop worldwide. Soybean hosts symbiotic nitrogen-fixing soil bacteria (rhizobia) in root nodules. In soybean ecosystems, N2O emissions often increase during decomposition of the root nodules. Our previous study showed that N2O reductase can be used to mitigate N2O emission from soybean fields during nodule decomposition by inoculation with nosZ++ strains [mutants with increased N2O reductase (N2OR) activity] of Bradyrhizobium diazoefficiens. Here, we show that N2O emission can be reduced at the field scale by inoculation with a mixed culture of indigenous nosZ+ strains of B. diazoefficiens USDA110 group isolated from Japanese agricultural fields. Our results also suggested that nodule nitrogen is the main source of N2O production during nodule decomposition. Isolating nosZ+ strains from local soybean fields would be more applicable and feasible for many soybean-producing countries than generating mutants.

Mitigation of soil N2O emission by inoculation with a mixed culture of indigenous Bradyrhizobium diazoefficiens

PubMed Central

Akiyama, Hiroko; Hoshino, Yuko Takada; Itakura, Manabu; Shimomura, Yumi; Wang, Yong; Yamamoto, Akinori; Tago, Kanako; Nakajima, Yasuhiro; Minamisawa, Kiwamu; Hayatsu, Masahito

2016-01-01

Agricultural soil is the largest source of nitrous oxide (N2O), a greenhouse gas. Soybean is an important leguminous crop worldwide. Soybean hosts symbiotic nitrogen-fixing soil bacteria (rhizobia) in root nodules. In soybean ecosystems, N2O emissions often increase during decomposition of the root nodules. Our previous study showed that N2O reductase can be used to mitigate N2O emission from soybean fields during nodule decomposition by inoculation with nosZ++ strains [mutants with increased N2O reductase (N2OR) activity] of Bradyrhizobium diazoefficiens. Here, we show that N2O emission can be reduced at the field scale by inoculation with a mixed culture of indigenous nosZ+ strains of B. diazoefficiens USDA110 group isolated from Japanese agricultural fields. Our results also suggested that nodule nitrogen is the main source of N2O production during nodule decomposition. Isolating nosZ+ strains from local soybean fields would be more applicable and feasible for many soybean-producing countries than generating mutants. PMID:27633524

Genomic characterization of a core set of the USDA-NPGS Ethiopian sorghum germplasm collection: implications for germplasm conservation, evaluation, and utilization in crop improvement

USDA-ARS?s Scientific Manuscript database

The USDA-ARS National Plant Germplasm System (NPGS) preserves the largest sorghum germplasm collection in the world and includes 7,217 accessions from the center of diversity located in Ethiopia. This exotic germplasm has not been characterized on a genome-wide basis to better inform its conservati...

Advanced Manufacturing and Value-added Products from US Agriculture

NASA Technical Reports Server (NTRS)

Villet, Ruxton H.; Child, Dennis R.; Acock, Basil

1992-01-01

An objective of the US Department of Agriculture (USDA) Agriculture Research Service (ARS) is to develop technology leading to a broad portfolio of value-added marketable products. Modern scientific disciplines such as chemical engineering are brought into play to develop processes for converting bulk commodities into high-margin products. To accomplish this, the extremely sophisticated processing devices which form the basis of modern biotechnology, namely, genes and enzymes, can be tailored to perform the required functions. The USDA/ARS is a leader in the development of intelligent processing equipment (IPE) for agriculture in the broadest sense. Applications of IPE are found in the production, processing, grading, and marketing aspects of agriculture. Various biotechnology applications of IPE are discussed.

Irrigation initiation timing in soybean grown on sandy soils in Northeast Arkansas

USDA-ARS?s Scientific Manuscript database

Irrigation initiation timing was evaluated in furrow-irrigated soybean field with sandy soils in Mississippi County, AR. A major objective of this 2015 study was to validate and expand irrigation timing recommendations that pair plant growth measures with weather cues including use of local weather ...

Identifying the Future Needs for Long-Term USDA Efforts in Agricultural Animal Genomics

PubMed Central

Green, R. D.; Qureshi, M. A.; Long, J. A.; Burfening, P.J.; Hamernik, D.L.

2007-01-01

Agricultural animal research has been immensely successful over the past century in developing technology and methodologies that have dramatically enhanced production efficiency of the beef, dairy, swine, poultry, sheep, and aquaculture industries. In the past two decades, molecular biology has changed the face of agricultural animal research, primarily in the arena of genomics and the relatively new offshoot areas of functional genomics, proteomics, transcriptomics, metabolomics and metagenomics. Publication of genetic and physical genome maps in the past 15 years has given rise to the possibility of being able finally to understand the molecular nature of the genetic component of phenotypic variation. While quantitative geneticists have been remarkably successful in improving production traits, genomic technology holds potential for being able to lead to more accurate and rapid animal improvement, especially for phenotypic traits that are difficult to measure. Recently, the agricultural research community has been able to capitalize on the infrastructure built by the human genome project by sequencing two of the major livestock genomes (Gallus domesticus and Bos Taurus). The 2005 calendar year is truly unprecedented in the history of agricultural animal research since draft genome sequences were completed for chickens and cattle. In addition, sequencing the swine and equine genome was initiated in early 2006. We now have in place a powerful toolbox for understanding the genetic variation underlying economically important and complex phenotypes. Over the past few years, new challenges have emerged for animal agriculture. Enhancements in production efficiency have not come without some negative side effects on animal well-being and longevity in production environments, including losses in reproductive efficiency, increased stress susceptibility, increased animal waste issues, and increased susceptibility to animal metabolic and infectious diseases. When considered in concert with societal concerns in the areas of natural resource conservation and protection, animal welfare, and food safety, it is clear that publicly supported agricultural research must be focused on enhancing the functionality and well-being of livestock and poultry in environmentally neutral production systems in the future. Realizing the great potential for animal genomics to address these and other issues, a workshop was convened by the U. S. Department of Agriculture (USDA) in Washington, DC in September of 2004. The workshop was entitled “Charting the Road Map for Long Term USDA Efforts in Agricultural Animal Genomics”. This paper summarizes the proceedings of the workshop and the resulting recommendations. The need for a cohesive, comprehensive long-term plan for all of USDA's research efforts in animal genomics was evident at the workshop, requiring further integration of the efforts of the USDA's Cooperative State Research, Education, and Extension Service (CSREES) and the USDA's Agricultural Research Service (ARS) to achieve the greatest return on investment. PMID:17384737

Genome-wide association studies dissect the genetic networks underlying agronomical traits in soybean.

PubMed

Fang, Chao; Ma, Yanming; Wu, Shiwen; Liu, Zhi; Wang, Zheng; Yang, Rui; Hu, Guanghui; Zhou, Zhengkui; Yu, Hong; Zhang, Min; Pan, Yi; Zhou, Guoan; Ren, Haixiang; Du, Weiguang; Yan, Hongrui; Wang, Yanping; Han, Dezhi; Shen, Yanting; Liu, Shulin; Liu, Tengfei; Zhang, Jixiang; Qin, Hao; Yuan, Jia; Yuan, Xiaohui; Kong, Fanjiang; Liu, Baohui; Li, Jiayang; Zhang, Zhiwu; Wang, Guodong; Zhu, Baoge; Tian, Zhixi

2017-08-24

Soybean (Glycine max [L.] Merr.) is one of the most important oil and protein crops. Ever-increasing soybean consumption necessitates the improvement of varieties for more efficient production. However, both correlations among different traits and genetic interactions among genes that affect a single trait pose a challenge to soybean breeding. To understand the genetic networks underlying phenotypic correlations, we collected 809 soybean accessions worldwide and phenotyped them for two years at three locations for 84 agronomic traits. Genome-wide association studies identified 245 significant genetic loci, among which 95 genetically interacted with other loci. We determined that 14 oil synthesis-related genes are responsible for fatty acid accumulation in soybean and function in line with an additive model. Network analyses demonstrated that 51 traits could be linked through the linkage disequilibrium of 115 associated loci and these links reflect phenotypic correlations. We revealed that 23 loci, including the known Dt1, E2, E1, Ln, Dt2, Fan, and Fap loci, as well as 16 undefined associated loci, have pleiotropic effects on different traits. This study provides insights into the genetic correlation among complex traits and will facilitate future soybean functional studies and breeding through molecular design.

Changes in gene expression between a soybean F1 hybrid and its parents are associated with agronomically valuable traits

USDA-ARS?s Scientific Manuscript database

Plant breeding consists of creating phenotypic and genetic diversity by hybridizing diverse parents and selecting progeny which have new combinations of targeted traits. Soybean [Glycine max (L.) Merr.] genetic diversity is limited because domesticated soybean has undergone multiple genetic bottlene...

Registration of N6001 soybean germplasm with enhanced yield derived from Japanese cultivar Suzuyutaka

USDA-ARS?s Scientific Manuscript database

The genetic base of U.S. soybean (Glycine max (L.) Merr.) is relatively narrow, with Chinese ancestors providing most of the genetic base. Japanese lines have made relatively small contributions, suggesting that incorporation of novel Japanese genetics into USA breeding populations may aid soybean ...

Pathogenicity and genetic diversity of Fusarium oxysporum causing soybean root rot in northeast China

USDA-ARS?s Scientific Manuscript database

Soybean is an important edible legume cultivated around the world. However, soybean production is seriously impacted by the widespread occurrence of root rot disease. In this study, genetic diversity and pathogenicity of Fusarium oxysporum associated with root rot of soybean in Heilongjiang province...

Effect of Flooding and the nosZ Gene in Bradyrhizobia on Bradyrhizobial Community Structure in the Soil.

PubMed

Saeki, Yuichi; Nakamura, Misato; Mason, Maria Luisa T; Yano, Tsubasa; Shiro, Sokichi; Sameshima-Saito, Reiko; Itakura, Manabu; Minamisawa, Kiwamu; Yamamoto, Akihiro

2017-06-24

We investigated the effects of the water status (flooded or non-flooded) and presence of the nosZ gene in bradyrhizobia on the bradyrhizobial community structure in a factorial experiment that examined three temperature levels (20°C, 25°C, and 30°C) and two soil types (andosol and gray lowland soil) using microcosm incubations. All microcosms were inoculated with Bradyrhizobium japonicum USDA6 T , B. japonicum USDA123, and B. elkanii USDA76 T , which do not possess the nosZ gene, and then half received B. diazoefficiens USDA110 T wt (wt for the wild-type) and the other half received B. diazoefficiens USDA110ΔnosZ. USDA110 T wt possesses the nosZ gene, which encodes N 2 O reductase; 110ΔnosZ, a mutant variant, does not. Changes in the community structure after 30- and 60-d incubations were investigated by denaturing-gradient gel electrophoresis and an image analysis. USDA6 T and 76 T strains slightly increased in non-flooded soil regardless of which USDA110 T strain was present. In flooded microcosms with the USDA110 T wt strain, USDA110 T wt became dominant, whereas in microcosms with the USDA110ΔnosZ, a similar change in the community structure occurred to that in non-flooded microcosms. These results suggest that possession of the nosZ gene confers a competitive advantage to B. diazoefficiens USDA110 T in flooded soil. We herein demonstrated that the dominance of B. diazoefficiens USDA110 T wt within the soil bradyrhizobial population may be enhanced by periods of flooding or waterlogging systems such as paddy-soybean rotations because it appears to have the ability to thrive in moderately anaerobic soil.

Chemical characteristics and volatile profile of genetically modified peanut cultivars.

PubMed

Ng, Ee Chin; Dunford, Nurhan T; Chenault, Kelly

2008-10-01

Genetic engineering has been used to modify peanut cultivars for improving agronomic performance and pest resistance. Food products developed through genetic engineering have to be assessed for their safety before approval for human consumption. Preservation of desirable chemical, flavor and aroma attributes of the peanut cultivars during the genetic modifications is critical for acceptance of genetically modified peanuts (GMP) by the food industry. Hence, the main objective of this study is to examine chemical characteristics and volatile profile of GMP. The genetically modified peanut cultivars, 188, 540 and 654 were obtained from the USDA-ARS in Stillwater, Oklahoma. The peanut variety Okrun was examined as a control. The volatile analysis was performed using a gas chromatograph/mass spectrometer (GC/MS) equipped with an olfactory detector. The peanut samples were also analyzed for their moisture, ash, protein, sugar and oil compositions. Experimental results showed that the variations in nutritional composition of peanut lines examined in this study were within the values reported for existing cultivars. There were minor differences in volatile profile among the samples. The implication of this study is significant, since it shows that peanut cultivars with greater pest and fungal resistance were successfully developed without major changes in their chemical characteristics.

Opportunities for improving milk production efficiency in dairy cattle

USDA-ARS?s Scientific Manuscript database

Increasing feed costs and the desire to improve environmental stewardship have stimulated renewed interest in improving feed efficiency of livestock, including that of U.S. dairy herds. For instance, USDA cost projections for corn and soybean meal suggest a 20% increase over 2010 pricing for a 16% p...

Opportunities for improving milk production efficiency in dairy cattle

USDA-ARS?s Scientific Manuscript database

Increasing feed costs and the desire to improve environmental stewardship have stimulated interest in improving feed efficiency of livestock, including that of U.S. dairy herds. For instance, USDA cost projections for corn and soybean meal suggest a 20% increase over 2010 pricing for a 16% protein ...

Molecular genetic analysis of seed protein control at Linkage Group I in soybean near-isogenic lines

USDA-ARS?s Scientific Manuscript database

The molecular mechanisms that influence soybean seed composition are not well understood. Because the profitability of the soybean crop is affected by seed protein and oil content, insight into the genetic controls involved in these traits is important for future soybean improvement. Here we examine...

Genetic architecture of wild soybean (Glycine soja) response to soybean cyst nematode (Heterodera glycines).

PubMed

Zhang, Hengyou; Song, Qijian; Griffin, Joshua D; Song, Bao-Hua

2017-12-01

The soybean cyst nematode (SCN) is one of the most destructive pathogens of soybean plants worldwide. Host-plant resistance is an environmentally friendly method to mitigate SCN damage. To date, the resistant soybean cultivars harbor limited genetic variation, and some are losing resistance. Thus, a better understanding of the genetic mechanisms of the SCN resistance, as well as developing diverse resistant soybean cultivars, is urgently needed. In this study, a genome-wide association study (GWAS) was conducted using 1032 wild soybean (Glycine soja) accessions with over 42,000 single-nucleotide polymorphisms (SNPs) to understand the genetic architecture of G. soja resistance to SCN race 1. Ten SNPs were significantly associated with the response to race 1. Three SNPs on chromosome 18 were localized within the previously identified quantitative trait loci (QTLs), and two of which were localized within a strong linkage disequilibrium block encompassing a nucleotide-binding (NB)-ARC disease resistance gene (Glyma.18G102600). Genes encoding methyltransferases, the calcium-dependent signaling protein, the leucine-rich repeat kinase family protein, and the NB-ARC disease resistance protein, were identified as promising candidate genes. The identified SNPs and candidate genes can not only shed light on the molecular mechanisms underlying SCN resistance, but also can facilitate soybean improvement employing wild genetic resources.

A single origin and moderate bottleneck during domestication of soybean (Glycine max): implications from microsatellites and nucleotide sequences

PubMed Central

Guo, Juan; Wang, Yunsheng; Song, Chi; Zhou, Jianfeng; Qiu, Lijuan; Huang, Hongwen; Wang, Ying

2010-01-01

Background and Aims It is essential to illuminate the evolutionary history of crop domestication in order to understand further the origin and development of modern cultivation and agronomy; however, despite being one of the most important crops, the domestication origin and bottleneck of soybean (Glycine max) are poorly understood. In the present study, microsatellites and nucleotide sequences were employed to elucidate the domestication genetics of soybean. Methods The genomes of 79 landrace soybeans (endemic cultivated soybeans) and 231 wild soybeans (G. soja) that represented the species-wide distribution of wild soybean in East Asia were scanned with 56 microsatellites to identify the genetic structure and domestication origin of soybean. To understand better the domestication bottleneck, four nucleotide sequences were selected to simulate the domestication bottleneck. Key Results Model-based analysis revealed that most of the landrace genotypes were assigned to the inferred wild soybean cluster of south China, South Korea and Japan. Phylogeny for wild and landrace soybeans showed that all landrace soybeans formed a single cluster supporting a monophyletic origin of all the cultivars. The populations of the nearest branches which were basal to the cultivar lineage were wild soybeans from south China. The coalescent simulation detected a bottleneck severity of K′ = 2 during soybean domestication, which could be explained by a foundation population of 6000 individuals if domestication duration lasted 3000 years. Conclusions As a result of integrating geographic distribution with microsatellite genotype assignment and phylogeny between landrace and wild soybeans, a single origin of soybean in south China is proposed. The coalescent simulation revealed a moderate genetic bottleneck with an effective wild soybean population used for domestication estimated to be ≈2 % of the total number of ancestral wild soybeans. Wild soybeans in Asia, especially in south China contain tremendous genetic resources for cultivar improvement. PMID:20566681

2,4-Dichlorophenoxyacetic acid (2,4-D)- and 2,4,5-trichlorophenoxyacetic acid (2,4,5-T)-degrading gene cluster in the soybean root-nodulating bacterium Bradyrhizobium elkanii USDA94.

PubMed

Hayashi, Shohei; Sano, Tomoki; Suyama, Kousuke; Itoh, Kazuhito

2016-01-01

Herbicides 2,4-dichlorophenoxyacetic acid (2,4-D)- and 2,4,5-trichlorophenoxyacetic acid (2,4,5-T)-degrading Bradyrhizobium strains possess tfdAα and/or cadABC as degrading genes. It has been reported that root-nodulating bacteria belonging to Bradyrhizobium elkanii also have tfdAα and cadA like genes but lack the ability to degrade these herbicides and that the cadA genes in 2,4-D-degrading and non-degrading Bradyrhizobium are phylogenetically different. In this study, we identified cadRABCK in the genome of a type strain of soybean root-nodulating B. elkanii USDA94 and demonstrated that the strain could degrade the herbicides when cadABCK was forcibly expressed. cadABCK-cloned Escherichia coli also showed the degrading ability. Because co-spiked phenoxyacetic acid (PAA) could induce the degradation of 2,4-D in B. elkanii USDA94, the lack of degrading ability in this strain was supposed to be due to the low inducing potential of the herbicides for the degrading gene cluster. On the other hand, tfdAα from B. elkanii USDA94 showed little potential to degrade the herbicides, but it did for 4-chlorophenoxyacetic acid and PAA. The 2,4-D-degrading ability of the cad cluster and the inducing ability of PAA were confirmed by preparing cadA deletion mutant. This is the first study to demonstrate that the cad cluster in the typical root-nodulating bacterium indeed have the potential to degrade the herbicides, suggesting that degrading genes for anthropogenic compounds could be found in ordinary non-degrading bacteria. Copyright © 2016 Elsevier GmbH. All rights reserved.

Comparison of Allergenicity at Gly m 4 and Gly m Bd 30K of Soybean after Genetic Modification.

PubMed

Tsai, Jaw-Ji; Chang, Ching-Yun; Liao, En-Chih

2017-02-15

Despite rapid growth of genetically modified (GM) crops, effective evaluations of genetic modification on allergenicity are still lacking. Gly m Bd 30K is cross-reactive with cow's milk protein casein, Gly m 4, and with birch pollen allergen Bet v 1. Here we compared the allergenicity between GM and non-GM soybeans with respect to the foci Gly m 4 and Gly m Bd 30K. Recombinant allergens of Gly m Bd 30K and Gly m 4 were generated and polyclonal antibodies raised to identify these two allergenic components in soybeans. GM soybean was first PCR-confirmed using 35S promoter. A total of 20 soybeans (half GM, half non-GM) obtained from a food market were used to assess their allergenicity based on IgE-binding and histamine release. The concentrations of Gly m Bd 30K and Gly m 4 in soybeans were then determined. Most soybean-allergic patients (9 of 10) showed IgE-positive reactions to the allergen of 30 kDa in molecular weight. That allergen turned out to be Glycine max Gly m Bd 30K based on LC-MS/MS analyses. Gly m Bd 30K is therefore the major allergen in the soybean. An increase in the transcription of both the Gly m 4 (stress-induced protein SAM22) and Gly m Bd 28K (soybean allergen precursor) was found after genetic modification. The protein concentrations of Gly m 4 and Gly m Bd 30K were not statistically significant different between non-GM and GM soybeans. There were also no statistical significances between them in the tests of IgE binding and histamine release. In conclusion, soybeans showed similar concentrations of Gly m Bd 30K and Gly m 4 regardless of genetic modification or absence thereof. The allergenicity of both Gly m Bd 30K and Gly m 4 was therefore not altered after genetic modification. Patients showing hypersensitivity to soybeans and who had pre-existing allergy to birch pollen and cow's milk casein might not further increase their allergic reactions following exposures to the GM soybeans.

A history of the Fish Farming Experimental Laboratory in Stuttgart, Arkansas and the transfer to the USDA/ARS Harry K. Dupree - Stuttgart National Aquaculture Research Center

USDA-ARS?s Scientific Manuscript database

In 1958, Congress enacted the Fish Rice Rotation Act that directed the Secretary of the Interior (in cooperation with USDA) to develop a program to solve problems related to production and harvest of warmwater fish. The idea was to establish a program to grow fish on flooded rice acreage in rotatio...

Registration of soybean germplasm line DB0638-70 with high yield potential and diverse genetic background

USDA-ARS?s Scientific Manuscript database

The release of soybean [Glycine max (L.) Merr.] germplasm line ‘DB0638-70’ is part of an effort to broaden the genetic base of soybean germplasm in North American soybean breeding programs. DB0638-70 was developed and released by the U.S. Department of Agriculture-Agricultural Research Service, Ston...

Estimating soybean genetic gain for yield in the northern United States – Influence of cropping history

USDA-ARS?s Scientific Manuscript database

Mean on-farm USA soybean yield increased at a rate of 21.3 kg per ha per year between 1924 and 2010, due to adoption of yield-enhancing genetic and agronomic technologies. To estimate annual rates of genetic yield gain in three northern USA soybean maturity groups (MG) and determine if these estimat...

Genetic Variation in an Inbred Plant: Variation in Tissue Cultures of Soybean [Glycine Max (L.) Merrill

PubMed Central

Roth, E. J.; Frazier, B. L.; Apuya, N. R.; Lark, K. G.

1989-01-01

Although soybean [Glycine max (L.) Merrill] grows as an inbreeding, generally homozygous, plant, the germplasm of the species contains large amounts of genetic variation. Analysis of soybean DNA has indicated that variation of RFLP (restriction fragment length polymorphism) markers within the species usually entails only two alleles at any one locus and that mixtures of such dimorphic loci account for virtually all of the restriction fragment variation seen in soybean (G. max), and in its ancestors, G. soja and G. gracilis. We report here that tissue cultures prepared from root tissue of individual soybean plants develop RFLP allelic differences at various loci. However, these newly generated alleles are almost always the same as ones previously found and characterized in other varieties of cultivated soybean (cultivars). This repeated generation of particular alleles suggests that much of the genetic variation seen in soybean could be the consequence of specific, relatively frequently employed, recombinational events. Such a mechanism would allow inbred cultivars to generate genetic variation (in the form of alternative alleles) in a controlled manner, perhaps in response to stress. PMID:2567263

Comparison of Genetic Diversity between Chinese and American Soybean (Glycine max (L.)) Accessions Revealed by High-Density SNPs

PubMed Central

Liu, Zhangxiong; Li, Huihui; Wen, Zixiang; Fan, Xuhong; Li, Yinghui; Guan, Rongxia; Guo, Yong; Wang, Shuming; Wang, Dechun; Qiu, Lijuan

2017-01-01

Soybean is one of the most important economic crops for both China and the United States (US). The exchange of germplasm between these two countries has long been active. In order to investigate genetic relationships between Chinese and US soybean germplasm, 277 Chinese soybean accessions and 300 US soybean accessions from geographically diverse regions were analyzed using 5,361 SNP markers. The genetic diversity and the polymorphism information content (PIC) of the Chinese accessions was higher than that of the US accessions. Population structure analysis, principal component analysis, and cluster analysis all showed that the genetic basis of Chinese soybeans is distinct from that of the USA. The groupings observed in clustering analysis reflected the geographical origins of the accessions; this conclusion was validated with both genetic distance analysis and relative kinship analysis. FST-based and EigenGWAS statistical analysis revealed high genetic variation between the two subpopulations. Analysis of the 10 loci with the strongest selection signals showed that many loci were located in chromosome regions that have previously been identified as quantitative trait loci (QTL) associated with environmental-adaptation-related and yield-related traits. The pattern of diversity among the American and Chinese accessions should help breeders to select appropriate parental accessions to enhance the performance of future soybean cultivars. PMID:29250088

Comparative Profiling of microRNA Expression in Soybean Seeds from Genetically Modified Plants and their Near-Isogenic Parental Lines.

PubMed

Wang, Yong; Lan, Qingkuo; Zhao, Xin; Xu, Wentao; Li, Feiwu; Wang, Qinying; Chen, Rui

2016-01-01

MicroRNAs (miRNAs) have been widely demonstrated to play fundamental roles in gene regulation in most eukaryotes. To date, there has been no study describing the miRNA composition in genetically modified organisms (GMOs). In this study, small RNAs from dry seeds of two GM soybean lines and their parental cultivars were investigated using deep sequencing technology and bioinformatic approaches. As a result, several differentially expressed gma-miRNAs were found between the GM and non-GM soybeans. Meanwhile, more differentially expressed gma-miRNAs were identified between distantly relatednon-GM soybeans, indicating that the miRNA components of soybean seeds varied among different soybean lines, including the GM and non-GM soybeans, and the extent of difference might be related to their genetic relationship. Additionally, fourteen novel gma-miRNA candidates were predicted in soybean seeds including a potential bidirectionally transcribed miRNA family with two genomic loci (gma-miR-N1). Our findings firstly provided useful data for miRNA composition in edible GM crops and also provided valuable information for soybean miRNA research.

Genetic diversity and structure of Phakopsora pachyrhizi infecting soybean in Nigeria

USDA-ARS?s Scientific Manuscript database

The genetic structure of Nigerian field populations of the soybean rust pathogen Phakopsora pachyrhizi was determined using 18 simple sequence repeat markers. A total of 113 fungal isolates was collected by hierarchical sampling infected leaves from soybean fields in three agroecological zones in 2...

Identification of genetically diverse genotypes for photoperiod insensitivity in soybean using RAPD markers.

PubMed

Singh, R K; Bhatia, V S; Yadav, Sanjeev; Athale, Rashmi; Lakshmi, N; Guruprasad, K N; Chauhan, G S

2008-10-01

Most of the Indian soybean varieties were found to be highly sensitive to photoperiod, which limits their cultivation in only localized area. Identification of genetically diverse source of photoperiod insensitive would help to broaden the genetic base for this trait. Present study was undertaken with RAPD markers for genetic diversity estimation in 44 accessions of soybean differing in response to photoperiod sensitivity. The selected twenty-five RAPD primers produced a total of 199 amplicons, which generated 89.9 % polymorphism. The number of amplification products ranged from 2 to 13 for different primers. The polymorphism information content ranged from 0.0 for monomorphic loci to 0.5 with an average of 0.289. Genetic diversity between pairs of genotypes was 37.7% with a range of 3.9 to 71.6%. UPGMA cluster analysis placed all the accessions of soybean into four major clusters. No discernable geographical patterns were observed in clustering however; the smaller groups corresponded well with pedigree. Mantel's test (r = 0.915) indicates very good fit for clustering pattern. Two genotypes, MACS 330 and 111/2/1939 made a very divergent group from other accessions of soybean and highly photoperiod insensitive that may be potential source for broadening the genetic base of soybean for this trait.

78 FR 51706 - Bayer CropScience LP; Determination of Nonregulated Status of Soybean Genetically Engineered for...

Federal Register 2010, 2011, 2012, 2013, 2014

2013-08-21

... Soybean Genetically Engineered for Herbicide Resistance AGENCY: Animal and Plant Health Inspection Service... for resistance to the herbicides glyphosate and isoxaflutole, is no longer considered a regulated... for resistance to the herbicides glyphosate and isoxaflutole. The petition states that this soybean is...

Deletion of the SACPD-C locus alters the symbiotic relationship between Bradyrhizobium japonicum USDA110 and soybean, resulting in elicitation of plant defense response and nodulation defects

USDA-ARS?s Scientific Manuscript database

Legumes form symbiotic association with soil-dwelling bacteria collectively called rhizobia. This association results in the formation of nodules, unique plant-derived organs, within which the rhizobia are housed. Rhizobia encoded-nitrogenase facilitates the conversation of atmospheric nitrogen int...

Space Pomology: Dwarf Plums for Fresh Food Production

NASA Technical Reports Server (NTRS)

Spencer, LaShelle; Graham, Thomas; Stutte, Gary; Massa, Gioia; Mickens, Matthew; Wheeler, Raymond

2017-01-01

Recently, USDA ARS researchers genetically modified plums for rapid breeding work and noticed the plants could flower and develop fruit rapidly on relatively small plants. We have tested several of these genetically modified (GM) plums in plant chambers to assess their potential as a space crop. We have been able to clone these genetic lines using cuttings that are rooted using growth regulating compounds. Results showed that the GM plums indeed flower and fruit on small plants in controlled environments similar to what might be used in space, but they require cross-pollination with pollen from a standard plum. Analysis of stomatal conductance and leaf transpiration showed that water use went up in the light period, as expected, and but that GM types typically showed higher conductance than a standard plum. Analysis of tissue showed that fruit could be a good source of potassium and phenolic compounds, which could be beneficial as a bone loss countermeasure (Smith et al., 2014). These findings are all promising for using dwarf GM plums as a supplemental food for space, but further horticultural testing is needed before they are ready.

RNA-seq analysis reveals genetic response and tolerance mechanisms to ozone exposure in soybean

USDA-ARS?s Scientific Manuscript database

Oxidative stress caused by ground level ozone is a major contributor to yield loss in a number of important crop plants. Soybean (Glycine max) is especially ozone sensitive, and research into its response to oxidative stress is limited. To better understand the genetic response in soybean to oxida...

Complementary Genetic and Genomic Approaches Help Characterize the Linkage Group I Seed Protein QTL in Soybean

USDA-ARS?s Scientific Manuscript database

The nutritional and economic value of soybean [Glycine max (L.) Merrill] is effectively a function of its seed protein and oil content. Insight into the genetic and molecular control mechanisms involved in the deposition of these constituents in the developing seed is needed to guide future soybean ...

A comparison of protein and phenolic compounds in seed from GMO and non-GMO soybean

USDA-ARS?s Scientific Manuscript database

Soybean protein is a valuable and important component in human and animal diets. Approximately 94% of the soybean planted in the US is genetically modified (GM) to enhance quality and productivity. Since value-added traits are continuously being developed by genetic modification, it is important t...

A survey of the use of soy in processed Turkish meat products and detection of genetic modification.

PubMed

Ulca, Pelin; Balta, Handan; Senyuva, Hamide Z

2014-01-01

To screen for possible illegal use of soybeans in meat products, the performance characteristics of a commercial polymer chain reaction (PCR) kit for detection of soybean DNA in raw and cooked meat products were established. Minced chicken and beef products containing soybean at levels from 0.1% to 10.0% were analysed by real-time PCR to amplify the soybean lectin gene. The PCR method could reliably detect the addition of soybean at a level of 0.1%. A survey of 38 Turkish processed meat products found only six samples to be negative for the presence of soybean. In 32 (84%) positive samples, 13 (34%) contained levels of soy above 0.1%. Of soybean positive samples, further DNA analysis was conducted by real-time PCR to detect whether genetically modified (GM) soybean had been used. Of 32 meat samples containing soybean, two samples were positive for GM modification.

Building a comprehensive collection of ash germplasm

Treesearch

Mark P. Widrlechner

2010-01-01

The U.S. National Plant Germplasm System (NPGS) has conserved seed collections of ash (Fraxinus) germplasm at the USDA-ARS North Central Regional Plant Introduction Station (NCRPIS) in Ames, IA, since the 1970s.

Genetic improvement of U.S. soybean in Maturity Groups II, III, and IV

USDA-ARS?s Scientific Manuscript database

Soybean [Glycine max (L.) Merr.] improvement via plant breeding has been critical for the success of the crop. The objective of this study was to quantify genetic change in yield and other traits that occurred over the past 80 years of North American soybean breeding in maturity groups (MGs) II, III...

76 FR 78232 - Monsanto Co.; Determination of Nonregulated Status for Soybean Genetically Engineered To Have a...

Federal Register 2010, 2011, 2012, 2013, 2014

2011-12-16

... peer review of safety tests, and health effects of genetically modified organisms and glyphosate. APHIS...] Monsanto Co.; Determination of Nonregulated Status for Soybean Genetically Engineered To Have a Modified... that there is reason to believe are plant pests. Such genetically engineered organisms and products are...

Bradyrhizobium pachyrhizi sp. nov. and Bradyrhizobium jicamae sp. nov., isolated from effective nodules of Pachyrhizus erosus.

PubMed

Ramírez-Bahena, Martha Helena; Peix, Alvaro; Rivas, Raúl; Camacho, María; Rodríguez-Navarro, Dulce N; Mateos, Pedro F; Martínez-Molina, Eustoquio; Willems, Anne; Velázquez, Encarna

2009-08-01

Several strains isolated from the legume Pachyrhizus erosus were characterized on the basis of diverse genetic, phenotypic and symbiotic approaches. These novel strains formed two groups closely related to Bradyrhizobium elkanii according to their 16S rRNA gene sequences. Strains PAC48T and PAC68T, designated as the type strains of these two groups, presented 99.8 and 99.1% similarity, respectively, in their 16S rRNA gene sequences with respect to B. elkanii USDA 76T. In spite of these high similarity values, the analysis of additional phylogenetic markers such as atpD and glnII genes and the 16S-23S intergenic spacer (ITS) showed that strains PAC48T and PAC68T represented two separate novel species of the genus Bradyrhizobium with B. elkanii as their closest relative. Phenotypic differences among the novel strains isolated from Pachyrhizus and B. elkanii were found regarding the assimilation of carbon sources and antibiotic resistance. All these differences were congruent with DNA-DNA hybridization analysis which revealed 21% genetic relatedness between strains PAC48T and PAC68T and 46% and 25%, respectively, between these strains and B. elkanii LMG 6134T. The nodD and nifH genes of strains PAC48T and PAC68T were phylogenetically divergent from those of bradyrhizobia species that nodulate soybean. Soybean was not nodulated by the novel Pachyrhizus isolates. Based on the genotypic and phenotypic data obtained in this study, the new strains represent two novel species for which the names Bradyrhizobium pachyrhizi sp. nov. (type strain PAC48T=LMG 24246T=CECT 7396T) and Bradyrhizobium jicamae sp. nov. (type strain PAC68T=LMG 24556T=CECT 7395T) are proposed.

Fingerprinting Soybean Germplasm and Its Utility in Genomic Research

PubMed Central

Song, Qijian; Hyten, David L.; Jia, Gaofeng; Quigley, Charles V.; Fickus, Edward W.; Nelson, Randall L.; Cregan, Perry B.

2015-01-01

The United States Department of Agriculture, Soybean Germplasm Collection includes 18,480 domesticated soybean and 1168 wild soybean accessions introduced from 84 countries or developed in the United States. This collection was genotyped with the SoySNP50K BeadChip containing greater than 50K single-nucleotide polymorphisms. Redundant accessions were identified in the collection, and distinct genetic backgrounds of soybean from different geographic origins were observed that could be a unique resource for soybean genetic improvement. We detected a dramatic reduction of genetic diversity based on linkage disequilibrium and haplotype structure analyses of the wild, landrace, and North American cultivar populations and identified candidate regions associated with domestication and selection imposed by North American breeding. We constructed the first soybean haplotype block maps in the wild, landrace, and North American cultivar populations and observed that most recombination events occurred in the regions between haplotype blocks. These haplotype maps are crucial for association mapping aimed at the identification of genes controlling traits of economic importance. A case-control association test delimited potential genomic regions along seven chromosomes that most likely contain genes controlling seed weight in domesticated soybean. The resulting dataset will facilitate germplasm utilization, identification of genes controlling important traits, and will accelerate the creation of soybean varieties with improved seed yield and quality. PMID:26224783

Spatiotemporal patterns of non-genetically modified crops in the era of expansion of genetically modified food

PubMed Central

Sun, Jing; Wu, Wenbin; Tang, Huajun; Liu, Jianguo

2015-01-01

Despite heated debates over the safety of genetically modified (GM) food, GM crops have been expanding rapidly. Much research has focused on the expansion of GM crops. However, the spatiotemporal dynamics of non-genetically modified (non-GM) crops are not clear, although they may have significant environmental and agronomic impacts and important policy implications. To understand the dynamics of non-GM crops and to inform the debates among relevant stakeholders, we conducted spatiotemporal analyses of China’s major non-GM soybean production region, the Heilongjiang Province. Even though the total soybean planting area decreased from 2005 to 2010, surprisingly, there were hotspots of increase. The results also showed hotspots of loss as well as a large decline in the number and continuity of soybean plots. Since China is the largest non-GM soybean producer in the world, the decline of its major production region may signal the continual decline of global non-GM soybeans. PMID:26380899

Spatiotemporal patterns of non-genetically modified crops in the era of expansion of genetically modified food.

PubMed

Sun, Jing; Wu, Wenbin; Tang, Huajun; Liu, Jianguo

2015-09-18

Despite heated debates over the safety of genetically modified (GM) food, GM crops have been expanding rapidly. Much research has focused on the expansion of GM crops. However, the spatiotemporal dynamics of non-genetically modified (non-GM) crops are not clear, although they may have significant environmental and agronomic impacts and important policy implications. To understand the dynamics of non-GM crops and to inform the debates among relevant stakeholders, we conducted spatiotemporal analyses of China's major non-GM soybean production region, the Heilongjiang Province. Even though the total soybean planting area decreased from 2005 to 2010, surprisingly, there were hotspots of increase. The results also showed hotspots of loss as well as a large decline in the number and continuity of soybean plots. Since China is the largest non-GM soybean producer in the world, the decline of its major production region may signal the continual decline of global non-GM soybeans.

The Utilization of Soybean Wild Relatives: How Can It Be Effective?

USDA-ARS?s Scientific Manuscript database

Wild soybean (G. soja Sieb. & Zucc.) is the progenitor of soybean and is native to China, Taiwan, Japan, eastern Russia and the Korean peninsula. Research has repeatedly demonstrated that wild soybean is more genetically diverse than the cultivated soybean. There are 26 perennial Glycine species tha...

USDA forest service southern region – It’s all about GRITS

Treesearch

Barbara S. Crane; Kevin M. Potter

2017-01-01

Genetic resource management programs across the U.S. Department of Agriculture Forest Service (USDA FS) play a key role in supporting successful land management activities. The programs are responsible for developing and providing plant material for revegetation, seed management guidelines, emergency fire recovery assistance, genetic conservation strategies, climate...

Fluorescence In Situ Hybridization–Based Karyotyping of Soybean Translocation Lines

PubMed Central

Findley, Seth D.; Pappas, Allison L.; Cui, Yaya; Birchler, James A.; Palmer, Reid G.; Stacey, Gary

2011-01-01

Soybean (Glycine max [L.] Merr.) is a major crop species and, therefore, a major target of genomic and genetic research. However, in contrast to other plant species, relatively few chromosomal aberrations have been identified and characterized in soybean. This is due in part to the difficulty of cytogenetic analysis of its small, morphologically homogeneous chromosomes. The recent development of a fluorescence in situ hybridization –based karyotyping system for soybean has enabled our characterization of most of the chromosomal translocation lines identified to date. Utilizing genetic data from existing translocation studies in soybean, we identified the chromosomes and approximate breakpoints involved in five translocation lines. PMID:22384324

Resource Assessment and Tools

USDA-ARS?s Scientific Manuscript database

Various resource assessment strategies and tools are needed to ensure bioenergy feedstock materials are produced, harvested, and transported in a sustainable manner. This presentation highlights research accomplishments by the USDA-ARS Renewable Energy Assessment Project (REAP) team along with our u...

76 FR 37771 - Monsanto Co.; Availability of Petition, Plant Pest Risk Assessment, and Environmental Assessment...

Federal Register 2010, 2011, 2012, 2013, 2014

2011-06-28

... Determination of Nonregulated Status for Soybean Genetically Engineered To Have a Modified Fatty Acid Profile... soybean designated as MON 87705, which has been genetically engineered to have a modified fatty acid... our regulations concerning the introduction of certain genetically engineered organisms and products...

Improvement in nitrogen fixation capacity could be part of the domestication process in soybean

PubMed Central

Muñoz, N; Qi, X; Li, M-W; Xie, M; Gao, Y; Cheung, M-Y; Wong, F-L; Lam, H-M

2016-01-01

Biological nitrogen fixation (BNF) in soybeans is a complex process involving the interplay between the plant host and the symbiotic rhizobia. As nitrogen supply has a crucial role in growth and development, higher nitrogen fixation capacity would be important to achieve bigger plants and larger seeds, which were important selection criteria during plant domestication by humans. To test this hypothesis, we monitored the nitrogen fixation-related performance in 31 cultivated and 17 wild soybeans after inoculation with the slow-growing Bradyrhizobium diazoefficiens sp. nov. USDA110 and the fast-growing Sinorhizobium (Ensifer) fredii CCBAU45436. Our results showed that, in general, cultivated soybeans gave better performance in BNF. Electron microscopic studies indicated that there was an exceptionally high accumulation of poly-β-hydroxybutyrate bodies in bacteroids in the nodules of all wild soybeans tested, suggesting that the C/N balance in wild soybeans may not be optimized for nitrogen fixation. Furthermore, we identified new quantitative trait loci (QTLs) for total ureides and total nodule fresh weight by employing a recombinant inbred population composed of descendants from a cross between a cultivated and a wild parent. Using nucleotide diversity (θπ), divergence index (Fst) and distribution of fixed single-nucleotide polymorphisms as parameters, we found that some regions in the total ureides QTL on chromosome 17 and the total nodule fresh weight QTL on chromosome 12 exhibited very low diversity among cultivated soybeans, suggesting that these were traits specially selected during the domestication and breeding process. PMID:27118154

Development and phenotypic screening of an ethyl methane sulfonate mutant population in soybean

USDA-ARS?s Scientific Manuscript database

Soybean is an important oil-producing crop in the Fabaceae family and is utilized in various industries. With increasing demands for soybean oil and other soybean products, its production must be increased. Genetic improvement of the crop is important to meet the increasing demands for soybean. A ne...

Characterization and genetics of multiple soybean aphid biotype resistance in five soybean plant introductions

USDA-ARS?s Scientific Manuscript database

Soybean aphid (Aphis glycines Matsumura) is the most important soybean [Glycine max (L.) Merr.] insect pest in the USA. The objectives of this study were to characterize the resistance expressed in the five plant introductions (PIs) to four soybean aphid biotypes, determine the mode of resistance in...

Intersubgeneric hybridization between Glycine max and G. tomentella: Production of F1, amphidiploid, BC1, BC2 BC3 and fertile soybean plants

USDA-ARS?s Scientific Manuscript database

The genetic resources of the 26 species of the subgenus Glycine have not been exploited to broaden the genetic base of soybean (Glycine max; 2n = 40). Initially, we hybridized eight soybean cultivars with six accessions of 78- and one accession of 40-chromosome G. tomentella. One accession of G. arg...

Investigation of endogenous soybean food allergens by using a 2-dimensional gel electrophoresis approach.

PubMed

Rouquié, David; Capt, Annabelle; Eby, William H; Sekar, Vaithilingam; Hérouet-Guicheney, Corinne

2010-12-01

As part of the safety assessment of genetically modified (GM) soybean, 2-dimensional gel electrophoresis analyses were performed with the isoxaflutole and glyphosate tolerant soybean FG72, its non-GM near-isogenic counterpart (Jack) and three commercial non-GM soybean lines. The objective was to compare the known endogenous human food allergens in seeds in the five different soybean lines in order to evaluate any potential unintended effect(s) of the genetic modification. In total, 37 protein spots representing five well known soybean food allergen groups were quantified in each genotype. Qualitatively, all the allergenic proteins were detected in the different genetic backgrounds. Quantitatively, among 37 protein spots, the levels of accumulation of three allergens were slightly lower in the GM soybean than in the non-GM counterparts. Specifically, while the levels of two of these three allergens fell within the normal range of variation observed in the four non-GM varieties, the level of the third allergen was slightly below the normal range. Overall, there was no significant increase in the level of allergens in FG72 soybean seeds. Therefore, the FG72 soybean can be considered as safe as its non-GM counterpart with regards to endogenous allergenicity. Additional research is needed to evaluate the biological variability in the levels of endogenous soybean allergens and the correlation between level of allergens and allergenic potential in order to improve the interpretation of these data in the safety assessment of GM soybean context. Copyright © 2010 Elsevier Inc. All rights reserved.

Research is our middle name

USDA-ARS?s Scientific Manuscript database

This article highlights research by the USDA-ARS Greenhouse Production Research Group (GPRG). It provides an overview of the current research projects of the Application Technology Research Unit being conducted by the Agricultural Engineering Research Group, the Horticultural Insects Research Group...

Agricultural Conservation Planning Toolbox User's Manual

USDA-ARS?s Scientific Manuscript database

Agricultural Conservation Planning Framework (ACPF) comprises an approach for applying concepts of precision conservation to watershed planning in agricultural landscapes. To enable application of this approach, USDA/ARS has developed a set of Geographic Information System (GIS) based software tools...

Advancements in Cotton Harvesting Research

USDA-ARS?s Scientific Manuscript database

Cotton harvesting research within USDA ARS is focused on improving harvest productivity, cotton quality, and producer profitability. In recent years, our work has encompassed efforts to improve both spindle picker and brush-roll stripper harvesting systems. Specifically, work with cotton pickers i...

Soil Moisture Estimation Using Hyperspectral SWIR Imagery

NASA Astrophysics Data System (ADS)

Lewis, D.

2007-12-01

The U.S. Geological Survey (USGS) is engaged with the U.S. Department of Agriculture's (USDA) Agricultural Research Service (ARS) and the University of Georgia's National Environmentally Sound Production Agriculture Laboratory (NESPAL) both in Tifton, Georgia, USA, to develop transformations for medium and high resolution remotely sensed images to generate moisture indicators for soil. The Institute for Technology Development (ITD) is located at the Stennis Space Center in southern Mississippi and has developed hyperspectral sensor systems that, when mounted in aircraft, collect electromagnetic reflectance data of the terrain. The sensor suite consists of sensors for three different sections of the electromagnetic spectrum; the Ultra-Violet (UV), Visible/Near InfraRed (VNIR) and Short Wave InfraRed (SWIR). The USDA/ ARS' Southeast Watershed Research Laboratory has probes that measure and record soil moisture. Data taken from the ITD SWIR sensor and the USDA/ARS soil moisture meters were analyzed to study the informatics relationships between SWIR data and measured soil moisture. The geographic locations of 29 soil moisture meters provided by the USDA/ARS are in the vicinity of Tifton, Georgia. Using USGS Digital Ortho Quads (DOQ), flightlines were drawn over the 29 soil moisture meters. The SWIR sensor was installed into an aircraft. The coordinates for the flightlines were also loaded into the navigational system of the aircraft. This airborne platform was used to collect the data over these flightlines. In order to prepare the data set for analysis, standard preprocessing was performed. These standard processes included sensor calibration, spectral subsetting, and atmospheric calibration. All 60 bands of the SWIR data were collected for each line in the image data, 15 bands of which were stripped from the data set leaving 45 bands of information in the wavelength range of 906 to 1705 nanometers. All the image files were calibrated using the regression equations generated by using radiometer data collected over calibration tarps. Regions of Interest (ROI) were drawn over the image data set corresponding with the location of the soil moisture meters. Scripts written in ENVI's Interactive Data Language (IDL) were developed to extract the spectra from each of the processed hyperspectral image data over each soil moisture meter from its corresponding ROI. The informatics relationship between soil moisture and SWIR spectra was identified by using the resulting data set.

Genetic and phenotypic correlations of quantitative traits in two long-term randomly mated soybean populations

USDA-ARS?s Scientific Manuscript database

The genetic effects of long term random mating and natural selection aided by genetic male sterility (gms) were evaluated in two soybean [Glycine max (L.) Merr.] populations designated: RSII and RSIII. These populations were evaluated in the field at three locations each with two replications. Genot...

Southwest Watershed Research Center Data Access Project

NASA Astrophysics Data System (ADS)

Nichols, M. H.; Anson, E.

2008-05-01

Hydrologic data, including rainfall and runoff data, have been collected on experimental watersheds operated by the U.S. Department of Agriculture Agricultural Research Service (USDA-ARS) in southern Arizona since the 1950s. These data are of national and international importance and make up one of the most comprehensive semiarid watershed data sets in the world. The USDA-ARS Southwest Watershed Research Center has recently developed an electronic data processing system that includes an online interface (http://tucson.ars.ag.gov/dap) to provide public access to the data. The goal of the system is to promote analyses and interpretations of historic and current data by improving data access. Data are collected from sensors in the field and are transmitted to computers in the office. The data are then processed, quality checked, and made available to users via the Internet. The publicly accessible part of the system consists of an interactive Web site, which provides an interface to the data, and a relational database, which is used to process, store, and manage data. The system was released to the public in October 2003, and since that time the online data access Web site has received more than 4500 visitors.

Genomic Studies in Soybean: Toward Understanding Seed Oil and Protein Production

USDA-ARS?s Scientific Manuscript database

The molecular mechanisms that influence soybean seed composition are not well understood. Insight into the genetic controls involved in these traits is important for future soybean improvement. In this study, we identified candidate genes at the major soybean protein quantitative trait locus at Link...

Pathogenic variation of Phakopsora pachyrhizi infecting soybean in Nigeria

USDA-ARS?s Scientific Manuscript database

Soybean rust, caused by Phakopsora pachyrhizi, is a major disease in many soybean-producing areas in Nigeria. To determine the virulence and the genetic structure of Nigerian field populations of the soybean rust pathogen, a total of 116 purified isolates established from infected leaves randomly co...

Resources for blueberry growers

USDA-ARS?s Scientific Manuscript database

Local extension agents and USDA-ARS research scientists are excellent resources for various aspects of blueberry production, but several print and web-based resources are also available to help commercial blueberry growers. Growers are encouraged to consider the source for all web-based information....

USDA-ARS perspective on PAM

USDA-ARS?s Scientific Manuscript database

Polyacrylamide (PAM) described herein is a synthetic organic polymer used globally by a number of important industries. It also has a number of valuable applications in irrigated agriculture, including its use in furrow irrigation to control erosion and sediment loss in runoff, manage infiltration,...

National Date Palm Germplasm Repository

USDA-ARS?s Scientific Manuscript database

The National Clonal Germplasm Repository for Citrus & Dates (NCGRCD), located in Riverside, California USA, is a project of the Agricultural Research Service (ARS) of the United States Department of Agriculture (USDA). The NCGRCD maintains a collection of germplasm of date palm (Phoneix dactylifera ...

Notice of release of 'Bannock II' thickspike wheatgrass

USDA-ARS?s Scientific Manuscript database

The USDA-Agricultural Research Service (ARS) announces the cultivar release of 'Bannock II' thickspike wheatgrass [Elymus lanceolatus (Scribn. & J.G. Sm.) Gould]. 'Bannock II', a five clone synthetic, is the result of hybridization among selected genotypes from thickspike wheatgrass cultivars 'Bann...

‘Columbia Sunrise’ thornless trailing blackberry

USDA-ARS?s Scientific Manuscript database

‘Columbia Sunrise’ is a new, very early ripening, thornless trailing blackberry (Rubus subg. Rubus Watson) cultivar from the U.S. Department of Agriculture-Agricultural Research Service (USDA-ARS) breeding program in Corvallis, OR, released in cooperation with Oregon State University’s Agricultural ...

Transferring research data to producers

USDA-ARS?s Scientific Manuscript database

A column will be written for Cow Country News, a monthly newspaper published by the Kentucky Cattlemen Association. The column will present research findings and technologies generated by collaborative research between the USDA-ARS Forage-Animal Production Research Unit and the University of Kentuc...

Evaluation of the safety of a genetically modified DAS-444Ø6-6 soybean meal and hulls in a 90-day dietary toxicity study in rats.

PubMed

Papineni, Sabitha; Murray, Jennifer A; Ricardo, Ekmay; Dunville, Christina M; Sura, Radha Krishna; Thomas, Johnson

2017-11-01

A 90-day sub chronic toxicity study was conducted in rats to evaluate the safety of genetically modified DAS-444Ø6-6 soybeans expressing herbicide tolerant proteins when compared with its conventional comparators (non-transgenic near isoline control soybean and three commercially available non-transgenic line control soybeans). Rats were given diets formulated with either 10% or 20% w/w of soybean meal and 1% or 2% hulls of DAS-444Ø6-6 soybean with an equivalent amount of hulls from an isoline non-transgenic control soybean for at least 90 days. In addition, three separate 20% w/w non-transgenic commercially available soybean varieties were also given to groups of rats to serve as reference controls. Animals were evaluated by cage-side and hand-held detailed clinical observations, ophthalmic examinations, body weights/body weight gains, feed consumption, hematology, prothrombin time, urinalysis, clinical chemistry, selected organ weights, and gross and histopathologic examinations. Under the conditions of this study, the genetically modified DAS-444Ø6-6 diets did not cause any treatment-related effects in rats following 90 days of dietary administration as compared with rats fed diets with soybean of isoline control or commercial reference controls and are considered equivalent to the diets prepared from conventional comparators. Copyright © 2017 The Author(s). Published by Elsevier Ltd.. All rights reserved.

Evaluation of soybean germplasm conserved in NIAS genebank and development of mini core collections

PubMed Central

Kaga, Akito; Shimizu, Takehiko; Watanabe, Satoshi; Tsubokura, Yasutaka; Katayose, Yuichi; Harada, Kyuya; Vaughan, Duncan A.; Tomooka, Norihiko

2012-01-01

Genetic variation and population structure among 1603 soybean accessions, consisted of 832 Japanese landraces, 109 old and 57 recent Japanese varieties, 341 landrace from 16 Asian countries and 264 wild soybean accessions, were characterized using 191 SNP markers. Although gene diversity of Japanese soybean germplasm was slight lower than that of exotic soybean germplasm, population differentiation and clustering analyses indicated clear genetic differentiation among Japanese cultivated soybeans, exotic cultivated soybeans and wild soybeans. Nine hundred ninety eight Japanese accessions were separated to a certain extent into groups corresponding to their agro-morphologic characteristics such as photosensitivity and seed characteristics rather than their geographical origin. Based on the assessment of the SNP markers and several agro-morphologic traits, accessions that retain gene diversity of the whole collection were selected to develop several soybean sets of different sizes using an heuristic approach; a minimum of 12 accessions can represent the observed gene diversity; a mini-core collection of 96 accession can represent a major proportion of both geographic origin and agro-morphologic trait variation. These selected sets of germplasm will provide an effective platform for enhancing soybean diversity studies and assist in finding novel traits for crop improvement. PMID:23136496

Development and application of a novel genome-wide SNP array reveals domestication history in soybean

PubMed Central

Wang, Jiao; Chu, Shanshan; Zhang, Huairen; Zhu, Ying; Cheng, Hao; Yu, Deyue

2016-01-01

Domestication of soybeans occurred under the intense human-directed selections aimed at developing high-yielding lines. Tracing the domestication history and identifying the genes underlying soybean domestication require further exploration. Here, we developed a high-throughput NJAU 355 K SoySNP array and used this array to study the genetic variation patterns in 367 soybean accessions, including 105 wild soybeans and 262 cultivated soybeans. The population genetic analysis suggests that cultivated soybeans have tended to originate from northern and central China, from where they spread to other regions, accompanied with a gradual increase in seed weight. Genome-wide scanning for evidence of artificial selection revealed signs of selective sweeps involving genes controlling domestication-related agronomic traits including seed weight. To further identify genomic regions related to seed weight, a genome-wide association study (GWAS) was conducted across multiple environments in wild and cultivated soybeans. As a result, a strong linkage disequilibrium region on chromosome 20 was found to be significantly correlated with seed weight in cultivated soybeans. Collectively, these findings should provide an important basis for genomic-enabled breeding and advance the study of functional genomics in soybean. PMID:26856884

Development and application of a novel genome-wide SNP array reveals domestication history in soybean.

PubMed

Wang, Jiao; Chu, Shanshan; Zhang, Huairen; Zhu, Ying; Cheng, Hao; Yu, Deyue

2016-02-09

Domestication of soybeans occurred under the intense human-directed selections aimed at developing high-yielding lines. Tracing the domestication history and identifying the genes underlying soybean domestication require further exploration. Here, we developed a high-throughput NJAU 355 K SoySNP array and used this array to study the genetic variation patterns in 367 soybean accessions, including 105 wild soybeans and 262 cultivated soybeans. The population genetic analysis suggests that cultivated soybeans have tended to originate from northern and central China, from where they spread to other regions, accompanied with a gradual increase in seed weight. Genome-wide scanning for evidence of artificial selection revealed signs of selective sweeps involving genes controlling domestication-related agronomic traits including seed weight. To further identify genomic regions related to seed weight, a genome-wide association study (GWAS) was conducted across multiple environments in wild and cultivated soybeans. As a result, a strong linkage disequilibrium region on chromosome 20 was found to be significantly correlated with seed weight in cultivated soybeans. Collectively, these findings should provide an important basis for genomic-enabled breeding and advance the study of functional genomics in soybean.

Likelihood assessment for gene flow of transgenes from imported genetically modified soybean (Glycine max (L.) Merr.) to wild soybean (Glycine soja Seib. et Zucc.) in Japan as a component of environmental risk assessment

PubMed Central

Goto, Hidetoshi; McPherson, Marc A.; Comstock, Bradley A.; Stojšin, Duška; Ohsawa, Ryo

2017-01-01

Environmental risk assessment is required for genetically modified (GM) crops before their import into Japan. Annual roadside monitoring along transportation routes from ports to processing facilities for GM soybean (Glycine max (L.) Merr.) have been requested as a condition of import only approval because of lack of information on the likelihood of persistence of imported GM soybean for food, feed and processing and the potential for transfer of transgenes into wild soybean (Glycine soja Seib. et Zucc.) through gene flow under the Japanese environment. The survey of soybean seeds, plants and wild soybean populations were conducted along transportation routes from unloading ports to processing facilities that provided data to help quantify actual exposure. The survey indicated that the opportunities for co-existence and subsequent crossing between wild soybean populations and imported soybean are highly unlikely. Together the survey results and the comprehensive literature review demonstrated low exposure of imported GM soybean used for food, feed and processing in Japan. This evaluation of exposure level is not specific to particular GM soybean event but can apply to any GM soybean traits used for food, feed and processing if their weediness or invasiveness are the same as those of the conventional soybean. PMID:29085244

Recovery Plan for Laurel Wilt of Avocado

USDA-ARS?s Scientific Manuscript database

Laurel wilt kills American members of the Lauraceae plant family, including avocado (Persea americana). The disease threatens commercial avocado production in Florida, as well as the National Germplasm Repository for avocado in Miami (USDA-ARS). Elsewhere in the US, major (California) and minor comm...

Mycotoxin Management Studies by USDA-ARS, NCAUR in 2009

USDA-ARS?s Scientific Manuscript database

Studies again included several popcorn fields in 2009 in order to continue gathering data for modification of the previously developed management strategies for mycotoxins in field corn (including the mycotoxin predictive computer program). Without an attempt for optimization, the field corn model ...

Release of "Bella" white bean cultivar

USDA-ARS?s Scientific Manuscript database

"Bella" Reg. No. GP-___, PI ______) is a multiple disease resistant white bean (Phaseolus vulgaris L.) cultivar, adapted to the humid tropics that was developed and released cooperatively by the University of Puerto Rico Agricultural Experiment Station and the USDA-ARS. The breeding objective was to...

USDA ARS research on the screwworm fly

USDA-ARS?s Scientific Manuscript database

Screwworm myiasis is devastating to warm blooded animals. Eradication of the screwworm from mainland North America using the sterile insect technique is an unprecedented achievement; reinvasion is prevented by maintenance of a barrier at the Panama – Colombia border. Here we update research progress...

Sweetie Pie Thornless Blackberry

USDA-ARS?s Scientific Manuscript database

‘Sweetie Pie’ is a new thornless blackberry (Rubus L. subg. Watson) cultivar developed and released by the USDA-ARS Thad Cochran Southern Horticultural Laboratory. ‘Sweetie Pie’ is a vigorous, semi-erect blackberry that produces moderate yields of sweet high quality fruit having excellent flavor, ...

Broadening the U.S. alfalfa germplasm base

USDA-ARS?s Scientific Manuscript database

Over 4000 alfalfa (Medicago sativa L.) plant introductions (PIs) exist in the USDA-ARS National Plant Germplasm System (NPGS). NAAIC has discussed/proposed pre-breeding efforts to utilize this germplasm for creating pre-commercial alfalfa germplasm. Funding constraints have been one impediment to th...

‘Flavorfest’ strawberry

USDA-ARS?s Scientific Manuscript database

‘Flavorfest’, a “June-bearing” or “short-day” strawberry (Fragaria ananassa Duch. ex Rozier) cultivar, was introduced for propagation to nurseries 5 December 2012 by the U.S. Department of Agriculture - Agricultural Research Service (USDA-ARS). ‘Flavorfest’ was selected for its high yield of flavorf...

The genomic impacts of drift and selection for hybrid performance in maize

USDA-ARS?s Scientific Manuscript database

Modern maize breeding relies upon selection in inbreeding populations to improve performance in cross-population hybrids. The United States Department of Agriculture - Agricultural Research Service (USDA-ARS) reciprocal recurrent selection experiment between the BSSS and BSCB1 populations represent...

Advances in developing alternative treatments for postharvest pest control

USDA-ARS?s Scientific Manuscript database

USDA-ARS made two significant advances in the last 10 years in the development of alternative treatments for postharvest pest control: oxygenated phosphine fumigation and nitric oxide fumigation. Oxygenated phosphine is phosphine fumigation in an oxygen enriched atmosphere. It is significantly more...

Has your greenhouse gone virtual?

USDA-ARS?s Scientific Manuscript database

Virtual Grower is a free decision-support software program available from USDA-ARS that allows growers to build a virtual greenhouse. It was initially designed to help greenhouse growers estimate heating costs and conduct simple simulations to figure out where heat savings could be achieved. Featu...

VEGETATION CLASSIFICATION OF THE SAN PEDRO RIPARIAN CORRIDOR

EPA Science Inventory

This data set is a vegetation classification of the San Pedro riparian corridor. The classification was accomplished using a combination of Thematic Mapper Simulator (TMS) imagery from JPL, and high resolution color infrared photography (CIR)from USDA ARS Weslaco Tx, supported by...

Effects Of Winter Manure Application In Ohio On The Quality Of Surface Runoff

EPA Science Inventory

Winter application of manure can pose environmental risks depending upon the application approach. Seven continuous corn, instrumented watersheds (approximately 1 ha each) at the USDA-ARS North Applachian Experimental Watershed research station near Coshocton, Ohio were used to ...

IMPACTS OF URBANIZATION ON WATERSHED HYDROLOGIC FUNCTION

EPA Science Inventory

Although urbanization has a major impact on watershed hydrology, there have not been studies to quantify basic hydrological relationships that are altered by the addition of impervious surfaces. The USDA-ARS and USEPA-ORD-NRMRL have initiated a pilot program to study the impacts...

Updating the USDA ARS rotary wing nozzle models

USDA-ARS?s Scientific Manuscript database

Optimizing aerial spray applications requires proper setup of the sprayer system, particularly with respect to nozzle selection and operation, which significantly affects spray deposition, product efficacy, and spray drift. Droplet size from an aerial application is a function of the combination of...

Innovation - A view from the Lab

USDA-ARS?s Scientific Manuscript database

The USDA Ag Lab in Peoria helps bridge the gap between agricultural producers and commercial manufacturers. In 2015, the Ag Lab, officially known as the Agricultural Research Service (ARS) National Center for Agricultural Utilization Research (NCAUR), is celebrating 75 years of research in Peoria. T...

Spatial Modeling for Resources Framework (SMRF)

USDA-ARS?s Scientific Manuscript database

Spatial Modeling for Resources Framework (SMRF) was developed by Dr. Scott Havens at the USDA Agricultural Research Service (ARS) in Boise, ID. SMRF was designed to increase the flexibility of taking measured weather data and distributing the point measurements across a watershed. SMRF was developed...

‘Columbia Giant’ thornless trailing blackberry

USDA-ARS?s Scientific Manuscript database

‘Columbia Giant’ is a new thornless, very large fruited, trailing blackberry (Rubus subg. Rubus Watson) cultivar from the U.S. Department of Agriculture-Agricultural Research Service (USDA-ARS) breeding program in Corvallis, OR, released in cooperation with Oregon State University’s Agricultural Exp...

USDA,ARS areawide project-Anaoerobic soil disinfestation

USDA-ARS?s Scientific Manuscript database

Anaerobic soil disinfestation (ASD) is an effective method for control of soilborne pathogens, nematodes, and many weed species. In the absence of pest pressure, ASD provides increased yields of multiple crop species. Utilization of ASD requires the application of organic amendments, such as compos...

USDA-ARS update

USDA-ARS?s Scientific Manuscript database

Potato research at the Red River Valley Agricultural Research Center is conducted by the Sugarbeet & Potato Research Unit at two locations: the Northern Crop Science Laboratory in Fargo, ND and the Potato Research Worksite located in East Grand Forks, MN. Research in Fargo is laboratory oriented an...

Conservation seeding and diverse seed species performance

USDA-ARS?s Scientific Manuscript database

The rehabilitation of degraded big sagebrush (Artemisia spp.) communities infested with cheatgrass (Bromus tectorum) and other competitive weeds is a daunting task facing resource managers and land owners. In an effort to improve wildlife and livestock forage on degraded rangelands, the USDA-ARS-Gr...

Celebrating 75 years of research

USDA-ARS?s Scientific Manuscript database

The USDA Ag Lab in Peoria helps bridge the gap between agricultural producers and commercial manufacturers. In 2015, the Ag Lab, officially known as the Agricultural Research Service (ARS) National Center for Agricultural Utilization Research (NCAUR), is celebrating 75 years of research in Peoria. T...

Clover Biotechnology Research at FAPRU

USDA-ARS?s Scientific Manuscript database

Randy Dinkins (USDA-ARS-FAPRU) is conducting research to determine the utility of using the Medicago Affymetrix Genechip for use with red clover (Trifolium pretense). The Medicago Affymetrix Genechip contains approximately 51,000 probe sets that are derived from Medicago truncatula, 1,800 from Medi...

ARS irrigation research priorities and projects-An update

USDA-ARS?s Scientific Manuscript database

The USDA Agricultural Research Service focuses on six areas of research that are crucial to safe and effective use of all water resources for agricultural production: 1) Irrigation Scheduling Technologies for Water Productivity; 2) Water Productivity (WP) at Multiple Scales; 3) Irrigation Applicatio...

The Bradyrhizobium japonicum nolA gene and its involvement in the genotype-specific nodulation of soybeans.

PubMed Central

Sadowsky, M J; Cregan, P B; Gottfert, M; Sharma, A; Gerhold, D; Rodriguez-Quinones, F; Keyser, H H; Hennecke, H; Stacey, G

1991-01-01

Several soybean genotypes have been identified which specifically exclude nodulation by members of Bradyrhizobium japonicum serocluster 123. We have identified and sequenced a DNA region from B. japonicum strain USDA 110 which is involved in genotype-specific nodulation of soybeans. This 2.3-kilobase region, cloned in pMJS12, allows B. japonicum serocluster 123 isolates to form nodules on plants of serogroup 123-restricting genotypes. The nodules, however, were ineffective for symbiotic nitrogen fixation. The nodulation-complementing region is located approximately 590 base pairs transcriptionally downstream from nodD2. The 5' end of pMJS12 contains a putative open reading frame (ORF) of 710 base pairs, termed nolA. Transposon Tn3-HoHo mutations only within the ORF abolished nodulation complementation. The N terminus of the predicted nolA gene product has strong similarity with the N terminus of MerR, the regulator of mercury resistance genes. Translational lacZ fusion experiments indicated that nolA was moderately induced by soybean seed extract and the isoflavone genistein. Restriction fragments that hybridize to pMJS12 were detected in genomic DNAs from both nodulation-restricted and -unrestricted strains. PMID:1988958

DT2008: A Promising New Genetic Resource for Improved Drought Tolerance in Soybean When Solely Dependent on Symbiotic N2 Fixation

PubMed Central

Sulieman, Saad; Ha, Chien Van; Nasr Esfahani, Maryam; Watanabe, Yasuko; Nishiyama, Rie; Pham, Chung Thi Bao; Nguyen, Dong Van; Tran, Lam-Son Phan

2015-01-01

Water deficit is one of the major constraints for soybean production in Vietnam. The soybean breeding research efforts conducted at the Agriculture Genetics Institute (AGI) of Vietnam resulted in the development of promising soybean genotypes, suitable for the drought-stressed areas in Vietnam and other countries. Such a variety, namely, DT2008, was recommended by AGI and widely used throughout the country. The aim of this work was to assess the growth of shoots, roots, and nodules of DT2008 versus Williams 82 (W82) in response to drought and subsequent rehydration in symbiotic association as a means to provide genetic resources for genomic research. Better shoot, root, and nodule growth and development were observed in the cultivar DT2008 under sufficient, water deficit, and recovery conditions. Our results represent a good foundation for further comparison of DT2008 and W82 at molecular levels using high throughput omic technologies, which will provide huge amounts of data, enabling us to understand the genetic network involved in regulation of soybean responses to water deficit and increasing the chances of developing drought-tolerant cultivars. PMID:25685802

Genetic Diversity and Population Structure: Implications for Conservation of Wild Soybean (Glycine soja Sieb. et Zucc) Based on Nuclear and Chloroplast Microsatellite Variation

PubMed Central

He, Shuilian; Wang, Yunsheng; Volis, Sergei; Li, Dezhu; Yi, Tingshuang

2012-01-01

Wild soybean (Glycine soja Sieb. et Zucc) is the most important germplasm resource for soybean breeding, and is currently subject to habitat loss, fragmentation and population decline. In order to develop successful conservation strategies, a total of 604 wild soybean accessions from 43 locations sampled across its range in China, Japan and Korea were analyzed using 20 nuclear (nSSRs) and five chloroplast microsatellite markers (cpSSRs) to reveal its genetic diversity and population structure. Relatively high nSSR diversity was found in wild soybean compared with other self-pollinated species, and the region of middle and lower reaches of Yangtze River (MDRY) was revealed to have the highest genetic diversity. However, cpSSRs suggested that Korea is a center of diversity. High genetic differentiation and low gene flow among populations were detected, which is consistent with the predominant self-pollination of wild soybean. Two main clusters were revealed by MCMC structure reconstruction and phylogenetic dendrogram, one formed by a group of populations from northwestern China (NWC) and north China (NC), and the other including northeastern China (NEC), Japan, Korea, MDRY, south China (SC) and southwestern China (SWC). Contrib analyses showed that southwestern China makes the greatest contribution to the total diversity and allelic richness, and is worthy of being given conservation priority. PMID:23202917

Introducing the GRACEnet/REAP Data Contribution, Discovery, and Retrieval System.

PubMed

Del Grosso, S J; White, J W; Wilson, G; Vandenberg, B; Karlen, D L; Follett, R F; Johnson, J M F; Franzluebbers, A J; Archer, D W; Gollany, H T; Liebig, M A; Ascough, J; Reyes-Fox, M; Pellack, L; Starr, J; Barbour, N; Polumsky, R W; Gutwein, M; James, D

2013-07-01

Difficulties in accessing high-quality data on trace gas fluxes and performance of bioenergy/bioproduct feedstocks limit the ability of researchers and others to address environmental impacts of agriculture and the potential to produce feedstocks. To address those needs, the GRACEnet (Greenhouse gas Reduction through Agricultural Carbon Enhancement network) and REAP (Renewable Energy Assessment Project) research programs were initiated by the USDA Agricultural Research Service (ARS). A major product of these programs is the creation of a database with greenhouse gas fluxes, soil carbon stocks, biomass yield, nutrient, and energy characteristics, and input data for modeling cropped and grazed systems. The data include site descriptors (e.g., weather, soil class, spatial attributes), experimental design (e.g., factors manipulated, measurements performed, plot layouts), management information (e.g., planting and harvesting schedules, fertilizer types and amounts, biomass harvested, grazing intensity), and measurements (e.g., soil C and N stocks, plant biomass amount and chemical composition). To promote standardization of data and ensure that experiments were fully described, sampling protocols and a spreadsheet-based data-entry template were developed. Data were first uploaded to a temporary database for checking and then were uploaded to the central database. A Web-accessible application allows for registered users to query and download data including measurement protocols. Separate portals have been provided for each project (GRACEnet and REAP) at nrrc.ars.usda.gov/slgracenet/#/Home and nrrc.ars.usda.gov/slreap/#/Home. The database architecture and data entry template have proven flexible and robust for describing a wide range of field experiments and thus appear suitable for other natural resource research projects. Copyright © by the American Society of Agronomy, Crop Science Society of America, and Soil Science Society of America, Inc.

Transgenic soybean pollen (Glycine max L.) in honey from the Yucatán peninsula, Mexico.

PubMed

Villanueva-Gutiérrez, R; Echazarreta-González, C; Roubik, D W; Moguel-Ordóñez, Y B

2014-02-07

Using precise pollen species determination by conventional microscopic methods, accompanied by molecular genetic markers, we found bees collect GMO (genetically modified) soybean pollen and incorporate it in Yucatan honey. Honey comb samples from Las Flores, Campeche, Mexico, often contained soybean pollen. Pollen in honey was analyzed in nine samples; six contained substantial soy pollen and two tested positive for soybean GMO. Our analyses confirm field observations that honey bees, Apis mellifera, gather soybean pollen and nectar. The resultant risk for honey production in the Yucatán Peninsula and Mexico is evident in wholesale price reduction of 12% when GMO products are detected and honey consignments are rejected. Although this affects only 1% of current export honey (2011-2013) GMO soybean is an unacknowledged threat to apiculture and its economics in one of the world's foremost honey producing areas.

Transgenic soybean pollen (Glycine max L.) in honey from the Yucatán peninsula, Mexico

PubMed Central

Villanueva-Gutiérrez, R.; Echazarreta-González, C.; Roubik, D. W.; Moguel-Ordóñez, Y. B.

2014-01-01

Using precise pollen species determination by conventional microscopic methods, accompanied by molecular genetic markers, we found bees collect GMO (genetically modified) soybean pollen and incorporate it in Yucatan honey. Honey comb samples from Las Flores, Campeche, Mexico, often contained soybean pollen. Pollen in honey was analyzed in nine samples; six contained substantial soy pollen and two tested positive for soybean GMO. Our analyses confirm field observations that honey bees, Apis mellifera, gather soybean pollen and nectar. The resultant risk for honey production in the Yucatán Peninsula and Mexico is evident in wholesale price reduction of 12% when GMO products are detected and honey consignments are rejected. Although this affects only 1% of current export honey (2011–2013) GMO soybean is an unacknowledged threat to apiculture and its economics in one of the world's foremost honey producing areas. PMID:24503936

Molecular mapping and genomics of soybean seed protein: A review and perspective for the future

USDA-ARS?s Scientific Manuscript database

Meal protein derived from soybean [Glycine max (L) Merr.] seed is the primary source of protein in poultry and livestock feed. Protein is a key factor that determines the nutritional and economical value of soybean. Genetic improvement of soybean seed protein content is highly desirable, and major q...

Use of quantitative traits to assess aggressiveness of Phakopsora pachyrhizi isolates from Nigeria and the United States

USDA-ARS?s Scientific Manuscript database

Soybean rust, caused by Phakopsora pachyrhizi, is one of the most important foliar diseases of soybean worldwide. The soybean-P. pachyrhizi interaction is often complex because of the genetic variability in host and pathogen genotypes. In a compatible reaction, soybean genotypes produce tan colored ...

Genomic heterogeneity and structural variation in soybean near-isogenic lines

USDA-ARS?s Scientific Manuscript database

Near-isogenic lines (NILs) are a critical genetic resource for the soybean research community. The ability to identify and characterize the genes driving the phenotypic differences between NILs is limited by the degree to which differential genetic introgressions can be resolved. Furthermore, the ...

Assessment of Genetically Modified Soybean in Relation to Natural Variation in the Soybean Seed Metabolome

PubMed Central

Clarke, Joseph D.; Alexander, Danny C.; Ward, Dennis P.; Ryals, John A.; Mitchell, Matthew W.; Wulff, Jacob E.; Guo, Lining

2013-01-01

Genetically modified (GM) crops currently constitute a significant and growing part of agriculture. An important aspect of GM crop adoption is to demonstrate safety and equivalence with respect to conventional crops. Untargeted metabolomics has the ability to profile diverse classes of metabolites and thus could be an adjunct for GM crop substantial equivalence assessment. To account for environmental effects and introgression of GM traits into diverse genetic backgrounds, we propose that the assessment for GM crop metabolic composition should be understood within the context of the natural variation for the crop. Using a non-targeted metabolomics platform, we profiled 169 metabolites and established their dynamic ranges from the seeds of 49 conventional soybean lines representing the current commercial genetic diversity. We further demonstrated that the metabolome of a GM line had no significant deviation from natural variation within the soybean metabolome, with the exception of changes in the targeted engineered pathway. PMID:24170158

Irradiation influence on the detection of genetic-modified soybeans

NASA Astrophysics Data System (ADS)

Villavicencio, A. L. C. H.; Araújo, M. M.; Baldasso, J. G.; Aquino, S.; Konietzny, U.; Greiner, R.

2004-09-01

Three soybean varieties were analyzed to evaluate the irradiation influence on the detection of genetic modification. Samples were treated in a 60Co facility at dose levels of 0, 500, 800, and 1000Gy. The seeds were at first analyzed by Comet Assay as a rapid screening irradiation detection method. Secondly, germination test was performed to detect the viability of irradiated soybeans. Finally, because of its high sensitivity, its specificity and rapidity the polimerase chain reaction was the method applied for genetic modified organism detection. The analysis of DNA by the single technique of microgel electrophoresis of single cells (DNA Comet Assay) showed that DNA damage increased with increasing radiation doses. No negative influence of irradiation on the genetic modification detection was found.

Genetically modified soybeans and food allergies.

PubMed

Herman, Eliot M

2003-05-01

Allergenic reactions to proteins expressed in GM crops has been one of the prominent concerns among biotechnology critics and a concern of regulatory agencies. Soybeans like many plants have intrinsic allergens that present problems for sensitive people. Current GM crops, including soybean, have not been shown to add any additional allergenic risk beyond the intrinsic risks already present. Biotechnology can be used to characterize and eliminate allergens naturally present in crops. Biotechnology has been used to remove a major allergen in soybean demonstrating that genetic modification can be used to reduce allergenicity of food and feed. This provides a model for further use of GM approaches to eliminate allergens.

Determination of the genetic diversity of vegetable soybean [Glycine max (L.) Merr.] using EST-SSR markers*

PubMed Central

Zhang, Gu-wen; Xu, Sheng-chun; Mao, Wei-hua; Hu, Qi-zan; Gong, Ya-ming

2013-01-01

The development of expressed sequence tag-derived simple sequence repeats (EST-SSRs) provided a useful tool for investigating plant genetic diversity. In the present study, 22 polymorphic EST-SSRs from grain soybean were identified and used to assess the genetic diversity in 48 vegetable soybean accessions. Among the 22 EST-SSR loci, tri-nucleotides were the most abundant repeats, accounting for 50.00% of the total motifs. GAA was the most common motif among tri-nucleotide repeats, with a frequency of 18.18%. Polymorphic analysis identified a total of 71 alleles, with an average of 3.23 per locus. The polymorphism information content (PIC) values ranged from 0.144 to 0.630, with a mean of 0.386. Observed heterozygosity (H o) values varied from 0.0196 to 1.0000, with an average of 0.6092, while the expected heterozygosity (H e) values ranged from 0.1502 to 0.6840, with a mean value of 0.4616. Principal coordinate analysis and phylogenetic tree analysis indicated that the accessions could be assigned to different groups based to a large extent on their geographic distribution, and most accessions from China were clustered into the same groups. These results suggest that Chinese vegetable soybean accessions have a narrow genetic base. The results of this study indicate that EST-SSRs from grain soybean have high transferability to vegetable soybean, and that these new markers would be helpful in taxonomy, molecular breeding, and comparative mapping studies of vegetable soybean in the future. PMID:23549845

Laurel wilt: A global threat to avocado production

USDA-ARS?s Scientific Manuscript database

Laurel wilt kills American members of the Lauraceae plant family, including avocado (Persea americana). The disease threatens commercial avocado production in Florida, as well as the National Germplasm Repository for avocado in Miami (USDA-ARS). Elsewhere in the US, major (California) and minor comm...

Instrumentation for full-year plot-scale runoff monitoring

USDA-ARS?s Scientific Manuscript database

Replicated 0.34 ha cropping systems plots have been in place since 1991 at the USDA-ARS Goodwater Creek Experimental Watershed in central Missouri. Recently, instrumentation has been installed at 18 of those plots for continuous runoff water quality and quantity monitoring. That installation require...

Registration of "CPSG-3481 sugarcane

USDA-ARS?s Scientific Manuscript database

‘CPSG-3481’ (Reg. No. , PI 676023) sugarcane (a complex hybrid of Saccharum spp.) was a new cultivar developed through cooperative research conducted by the Shakarganj Sugar Research Institute in Pakistan and the USDA-ARS Sugarcane Field Station in USA, and released to growers for loam soils...

Laurel wilt: A global threat to avocado production

USDA-ARS?s Scientific Manuscript database

Laurel wilt kills members of the Lauraceae plant family, including avocado. The disease has invaded much of the southeastern USA, and threatens avocado commerce and homeowner production in Florida, valuable germplasm in Miami (USDA-ARS), and major production and germplasm in California and MesoAmer...

Crop stubble needs and opportunities

USDA-ARS?s Scientific Manuscript database

Farmers in Australia and elsewhere around the world are being offered opportunities to market their crop residues as a bioenergy feedstock, but many are not aware of how that could affect their soil resources. This report shares information from the USDA-ARS Renewable Energy Assessment Project (REAP...

Microwave bale moisture sensing: Field trial continued

USDA-ARS?s Scientific Manuscript database

A microwave moisture measurement technique was developed at the USDA, ARS Cotton Production and Processing Research Unit for moisture sensing of cotton bales after the bale press. The technique measures the propagation delay of a microwave signal that is transmitted through the cotton bale. This res...

Improved Mineral Nutrition for Pear Shoot Cultures

USDA-ARS?s Scientific Manuscript database

The USDA-ARS National Clonal Germplasm Repository has over 200 pear accessions in culture, encompassing 18 species. Plant growth response on standard tissue culture medium varies widely due to the wide horticultural diversity of this collection. We used a systematic response-surface approach to eva...

Update on organic rice research

USDA-ARS?s Scientific Manuscript database

Organic products command a premium in the marketplace and bring greater farmgate value to growers and processors. Although total rice acreage has decreased in Texas over the last ten years, there has been an increase in rice acreage produced under organic management. USDA ARS has conducted research ...

Municipal biosolid applications: Improving ecosystem services across urban, agricultural, and wildlife interfaces in Austin, Texas

USDA-ARS?s Scientific Manuscript database

Our project encompasses emerging contaminants, ecosystem services, and urban-agriculture-wildlife interfaces. This seminal research collaboration between USDA-ARS Grassland, Soil, and Water Research Laboratory, The City of Austin Water Utility, and Texas Parks and Wildlife Environmental Contaminant...

Field Assessment of A Variable-rate Aerial Application System

USDA-ARS?s Scientific Manuscript database

Several experiments were conducted to evaluate the system response of a variable-rate aerial application controller to changing flow rates. The research is collaboration between the USDA, ARS, APTRU and Houma Avionics, USA, manufacturer of a widely used flow controller designed for agricultural airc...

Water Quality Additions to CASC2D - Taps

DTIC Science & Technology

2001-09-01

agricultural management systems," USDA-ARS, Southeast Watershed Reseach Lab., Tifton , GA . Saghafian, B. (1992). "Hydrologic analysis of watershed...600/3-87/007, Environmental Research Laboratory, Office of Research and Development, USEPA, Athens, GA . Dumesnil, D., ed. (1993). "EPIC user’s guide

Long term agro-ecosystem research: The Southern Plains partnership

USDA-ARS?s Scientific Manuscript database

The USDA Agricultural Research Service (ARS) is coordinating ten well-established research sites as a Long Term Agro-ecosystem Research (LTAR) Network. The goal of the LTAR is to sustain a land-based infrastructure for research, environmental management testing, and education, that enables understan...

‘Baby Blues’ highbush blueberry

USDA-ARS?s Scientific Manuscript database

‘Baby Blues’ is a new highbush blueberry from the U.S. Department of Agriculture-Agricultural Research Service (USDA-ARS) breeding program in Corvallis, OR, released in cooperation with Oregon State University’s Agricultural Experiment Station. ‘Baby Blues’ is a vigorous, high-yielding, very small-f...

Limited irrigation research and infrared thermometry for detecting water stress

USDA-ARS?s Scientific Manuscript database

The USDA-ARS Limited Irrigation Research Farm, located outside of Greeley Colorado, is an experiment evaluating management perspectives of limited irrigation water. An overview of the farm systems is shown, including drip irrigation systems, water budgeting, and experimental design, as well as preli...

Automated Geospatial Watershed Assessment (AGWA) Documentation Version 2.0

EPA Science Inventory

The Automated Geospatial Watershed Assessment Http://www.epa.gov/nerlesd1/landsci/agwa/introduction.htm and www.tucson.ars.ag.gov/agwa) tool is a GIS interface jointly developed by the U.S. Environmental Protection Agency, USDA-Agricultural Research Service, University of Arizon...

AGWA: The Automated Geospatial Watershed Assessment Tool

EPA Science Inventory

The Automated Geospatial Watershed Assessment Tool (AGWA, see: www.tucson.ars.ag.gov/agwa or http://www.epa.gov/esd/land-sci/agwa/) is a GIS interface jointly developed by the USDA-Agricultural Research Service, the U.S. Environmental Protection Agency, the University of Arizona...

Automated Geospatial Watershed Assessment Tool (AGWA) Poster Presentation

EPA Science Inventory

The Automated Geospatial Watershed Assessment tool (AGWA, see: www.tucson.ars.ag.gov/agwa or http://www.epa.gov/esd/land-sci/agwa/) is a GIS interface jointly developed by the USDA-Agricultural Research Service, the U.S. Environmental Protection Agency, the University of Arizona...

Notice of Release: 'Stress tolerant smooth bromegrass STSB'

USDA-ARS?s Scientific Manuscript database

The Agricultural Research Service, U.S. Department of Agriculture announces the release of a stress tolerant smooth bromegrass (STSB) [Bromus inermys, Leyss.] germplasm (PI xxxx) developed by Dr. Bryan K. Kindiger at the USDA-ARS Grazinglands Research Laboratory, El Reno, OK 73036. STSB is release...

Notice of release of Syn1 Tall Fescue

USDA-ARS?s Scientific Manuscript database

The Agricultural Research Service, U.S. Department of Agriculture announces the release of Syn1 tall fescue [Festuca arundinacea (syn., Lolium arundinaceum Darbyshire; Schedonorus phoenix (Scop.) Holub)] (PI xxxx, PI xxxx) germplasm developed by Dr. Bryan K. Kindiger at the USDA-ARS Grazinglands Res...

Rangeland Research Roundup -1

USDA-ARS?s Scientific Manuscript database

Welcome to the inaugural edition of “Rangeland Research Roundup”. Please allow me to introduce myself and provide an overview of our rangeland research in this edition. My name is Justin Derner and I have been the Research Leader for the USDA-Agricultural Research Service (ARS), Rangeland Resources...

78 FR 47272 - Notice of Intent to Grant Exclusive License

Federal Register 2010, 2011, 2012, 2013, 2014

2013-08-05

... DEPARTMENT OF AGRICULTURE Agricultural Research Service Notice of Intent to Grant Exclusive... given that the U.S. Department of Agriculture, Agricultural Research Service, intends to grant to... to: USDA, ARS, Office of Technology Transfer, 5601 Sunnyside Avenue, Rm. 4-1174, Beltsville, Maryland...

76 FR 27002 - Notice of Intent To Grant Exclusive License

Federal Register 2010, 2011, 2012, 2013, 2014

2011-05-10

... DEPARTMENT OF AGRICULTURE Agricultural Research Service Notice of Intent To Grant Exclusive... given that the U.S. Department of Agriculture, Agricultural Research Service, intends to grant to Light... comments to: USDA, ARS, Office of Technology Transfer, 5601 Sunnyside Avenue, Rm. 4-1174, Beltsville...

76 FR 27002 - Notice of Intent To Grant Exclusive License

Federal Register 2010, 2011, 2012, 2013, 2014

2011-05-10

... DEPARTMENT OF AGRICULTURE Agricultural Research Service Notice of Intent To Grant Exclusive... given that the U.S. Department of Agriculture, Agricultural Research Service, intends to grant to the... comments to: USDA, ARS, Office of Technology Transfer, 5601 Sunnyside Avenue, Rm. 4-1174, Beltsville...

78 FR 23886 - Notice of Intent To Grant Exclusive License

Federal Register 2010, 2011, 2012, 2013, 2014

2013-04-23

... DEPARTMENT OF AGRICULTURE Agricultural Research Service Notice of Intent To Grant Exclusive... given that the U.S. Department of Agriculture, Agricultural Research Service, intends to grant to.... ADDRESSES: Send comments to: USDA, ARS, Office of Technology Transfer, 5601 Sunnyside Avenue, Rm. 4-1174...

75 FR 24568 - Notice of Intent To Grant Exclusive License

Federal Register 2010, 2011, 2012, 2013, 2014

2010-05-05

... DEPARTMENT OF AGRICULTURE Agricultural Research Service Notice of Intent To Grant Exclusive...: Notice is hereby given that the U.S. Department of Agriculture, Agricultural Research Service, intends to... comments to: USDA, ARS, Office of Technology Transfer, 5601 Sunnyside Avenue, Rm. 4-1174, Beltsville...

76 FR 71308 - Notice of Intent To Grant Exclusive License

Federal Register 2010, 2011, 2012, 2013, 2014

2011-11-17

... DEPARTMENT OF AGRICULTURE Agricultural Research Service Notice of Intent To Grant Exclusive... given that the U.S. Department of Agriculture, Agricultural Research Service, intends to grant to..., 2011. ADDRESSES: Send comments to: USDA, ARS, Office of Technology Transfer, 5601 Sunnyside Avenue, Rm...

77 FR 73009 - Notice of Intent To Grant Exclusive License

Federal Register 2010, 2011, 2012, 2013, 2014

2012-12-07

... DEPARTMENT OF AGRICULTURE Agricultural Research Service Notice of Intent To Grant Exclusive... given that the U.S. Department of Agriculture, Agricultural Research Service, intends to grant to City..., 2013. ADDRESSES: Send comments to: USDA, ARS, Office of Technology Transfer, 5601 Sunnyside Avenue, Rm...

75 FR 69916 - Notice of Intent To Grant Exclusive License

Federal Register 2010, 2011, 2012, 2013, 2014

2010-11-16

... DEPARTMENT OF AGRICULTURE Agricultural Research Service Notice of Intent To Grant Exclusive... given that the U.S. Department of Agriculture, Agricultural Research Service, intends to grant to... received on or before December 16, 2010. ADDRESSES: Send comments to: USDA, ARS, Office of Technology...

75 FR 20806 - Notice of Intent To Grant Exclusive License

Federal Register 2010, 2011, 2012, 2013, 2014

2010-04-21

... DEPARTMENT OF AGRICULTURE Agricultural Research Service Notice of Intent To Grant Exclusive... given that the U.S. Department of Agriculture, Agricultural Research Service, intends to grant to.... ADDRESSES: Send comments to: USDA, ARS, Office of Technology Transfer, 5601 Sunnyside Avenue, Rm. 4-1174...

75 FR 52924 - Notice of Intent To Grant Exclusive License

Federal Register 2010, 2011, 2012, 2013, 2014

2010-08-30

... DEPARTMENT OF AGRICULTURE Agricultural Research Service Notice of Intent To Grant Exclusive... given that the U.S. Department of Agriculture, Agricultural Research Service, intends to grant to... received on or before September 29, 2010. ADDRESSES: Send comments to: USDA, ARS, Office of Technology...

76 FR 71308 - Notice of Intent To Grant Exclusive License

Federal Register 2010, 2011, 2012, 2013, 2014

2011-11-17

... DEPARTMENT OF AGRICULTURE Agricultural Research Service Notice of Intent To Grant Exclusive... given that the U.S. Department of Agriculture, Agricultural Research Service, intends to grant to the...: Send comments to: USDA, ARS, Office of Technology Transfer, 5601 Sunnyside Avenue, Rm. 4-1174...

Semiarid ECohydrological Array – SECA 2058

USDA-ARS?s Scientific Manuscript database

The Southwestern ECohydrology Array (SECA) is a multi-user network that serves to assess biosphere / atmospheric exchange processes, as well as surface hydrology in semiarid ecosystems. SECA is administered through the USDA-ARS Southwest Watershed Research Center and the University of Arizona’s B2 E...

Subsurface Chloride Transport in Shallow Groundwater

USDA-ARS?s Scientific Manuscript database

High soil spatial heterogeneity was observed at the USDA-ARS Beltsville OPE3 field site using geophysical surveys (ground-penetrating radar) and soil textural analysis. This was confirmed with data on crop yields and pesticide concentrations in wells. To assess effects of soil heterogeneity on soil ...

Using UAVs to enhance the quality of precision agriculture

USDA-ARS?s Scientific Manuscript database

Recent studies by USDA Agricultural Research Service (ARS) have indicated potential for significant improvement in the quality and application of Precision Agriculture products through the use of very high resolution imagery. An assessment of potential platforms to collect such imagery at an afford...

Characterization of chicken dendritic cell markers

USDA-ARS?s Scientific Manuscript database

Animal and Natural Resources Institute, ARS-USDA, Beltsville, MD, USA. New mouse monoclonal antibodies which detect CD80 and CD83 were developed to characterize chicken dendritic cells (DCs). The characteristics of these molecules have been studied in human, swine, ovine, feline, and canine but not ...

Chapter 3 The state of the land

USDA-ARS?s Scientific Manuscript database

The USDA-Natural Resources Conservation Service (NRCS) has used resource inventories for over 65 years to assess the Nation’s natural resources on non-Federal lands. Since 1995, an interagency group composed of the NRCS, Agricultural Research Service (ARS), and Geological Survey (USGS) have worked t...

Management Can Reduce Contamination Potential of Beef Backgrounding

USDA-ARS?s Scientific Manuscript database

Producers who want to “background” beef cattle on karst landscapes face great challenges. This is because without proper management, manure-borne contaminants from backgrounding sites can quickly degrade water quality in karst regions. Western Kentucky University and USDA-ARS reported on three-year ...

Validating selective breeding approaches for disease resistance

USDA-ARS?s Scientific Manuscript database

Selective breeding of rainbow trout at the USDA/ARS National Center for Cool and Cold Water Aquaculture (NCCCWA) in Leetown, West Virginia is designed to accomplish four goals: 1) define commercially important traits such as disease resistance, growth rate, stress response, and feed efficiency; 2) d...

A review of aquatic weed biology and management research conducted by the United States Department of Agriculture-Agricultural Research Service.

PubMed

Anderson, Lars W J

2003-01-01

Ever-increasing demand for water to irrigate crops, support aquaculture, provide domestic water needs and to protect natural aquatic and riparian habitats has necessitated research to reduce impacts from a parallel increase in invasive aquatic weeds. This paper reviews the past 4-5 years of research by USDA-ARS covering such areas as weed biology, ecology, physiology and management strategies, including herbicides, biological control and potential for use of natural products. Research approaches range from field-level studies to highly specific molecular and biochemical work, spanning several disciplines and encompassing the most problematic weeds in these systems. This research has led to new insights into plant competition, host-specificity, and the fate of aquatic herbicides, their modes of action and effects on the environment. Another hallmark of USDA-ARS research has been its many collaborations with other federal, state action and regulatory agencies and private industry to develop new solutions to aquatic weed problems that affect our public natural resources and commercial enterprises.

Genomic heterogeneity and structural variation in soybean near isogenic lines

USDA-ARS?s Scientific Manuscript database

Near-isogenic lines (NILs) are a critical genetic resource for the soybean research community. The ability to identify and characterize the genes driving the phenotypic differences between NILs is limited by the degree to which differential genetic introgressions can be resolved. Furthermore, the ge...

A comparative study of human IgE binding to proteins of a genetically modified (GM) soybean and six non-GM soybeans grown in multiple locations.

PubMed

Lu, Mei; Jin, Yuan; Ballmer-Weber, Barbara; Goodman, Richard E

2018-02-01

Prior to commercialization, genetically modified (GM) crops are evaluated to determine the allergenicity of the newly expressed protein. Some regulators require an evaluation of endogenous allergens in commonly allergenic crops including soybean to determine if genetic transformation increased endogenous allergen concentrations, even asking for IgE testing using sera from individual sensitized subjects. Little is known about the variability of the expression of endogenous allergens among non-GM varieties or under different environmental conditions. We tested IgE binding to endogenous allergenic proteins in an experimental non-commercial GM line, a non-GM near-isoline control, and five non-GM commercial soybean lines replicated at three geographically separated locations. One-dimensional (1D) and two-dimensional (2D) immunoblotting and ELISA were performed using serum or plasma from eleven soybean allergic patients. The results of immunoblots and ELISA showed no significant differences in IgE binding between the GM line and its non-GM near-isoline control. However, some distinct differences in IgE binding patterns were observed among the non-GM commercial soybean lines and between different locations, highlighting the inherent variability in endogenous allergenic proteins. Understanding the potential variability in the levels of endogenous allergens is necessary to establish a standard of acceptance for GM soybeans compared to non-GM soybean events and lines. Copyright © 2018. Published by Elsevier Ltd.

Molecular mapping and genomics of soybean seed protein: a review and perspective for the future.

PubMed

Patil, Gunvant; Mian, Rouf; Vuong, Tri; Pantalone, Vince; Song, Qijian; Chen, Pengyin; Shannon, Grover J; Carter, Tommy C; Nguyen, Henry T

2017-10-01

Genetic improvement of soybean protein meal is a complex process because of negative correlation with oil, yield, and temperature. This review describes the progress in mapping and genomics, identifies knowledge gaps, and highlights the need of integrated approaches. Meal protein derived from soybean [Glycine max (L) Merr.] seed is the primary source of protein in poultry and livestock feed. Protein is a key factor that determines the nutritional and economical value of soybean. Genetic improvement of soybean seed protein content is highly desirable, and major quantitative trait loci (QTL) for soybean protein have been detected and repeatedly mapped on chromosomes (Chr.) 20 (LG-I), and 15 (LG-E). However, practical breeding progress is challenging because of seed protein content's negative genetic correlation with seed yield, other seed components such as oil and sucrose, and interaction with environmental effects such as temperature during seed development. In this review, we discuss rate-limiting factors related to soybean protein content and nutritional quality, and potential control factors regulating seed storage protein. In addition, we describe advances in next-generation sequencing technologies for precise detection of natural variants and their integration with conventional and high-throughput genotyping technologies. A syntenic analysis of QTL on Chr. 15 and 20 was performed. Finally, we discuss comprehensive approaches for integrating protein and amino acid QTL, genome-wide association studies, whole-genome resequencing, and transcriptome data to accelerate identification of genomic hot spots for allele introgression and soybean meal protein improvement.

Proceedings of the Government Users Workshop on Ground Penetrating Radar Applications and Equipment 26-27 March 1992 Vicksburg, Mississippi

DTIC Science & Technology

1992-12-01

Allison P.O. Box 946 USDA Tifton , GA 31794 Box 946 Phone: 912-386-3899 Tifton , GA 31794 FAX: 912-386-7215 Phone: 912-386-7075 FAX: 912-386-7215 Paul...FAX: 603-889-3984 FAX: 071-724-1433 Ricky Fletcher S. V. Cosvay USDA-ARS-SEWRL Sensors and Software, Inc. Rt. 4, Box 1390 5566 Tomken Road Tifton , GA ... Tifton , GA 31793 Phone: 305-634-4507 Phone: 912-386-7174 FAX: 305-635-4901 FAX: 912-386-7215 8 GOVERNMENT USERS WORKSHOP ON GROUND PENETRATING RADAR

Soybean seed extracts preferentially express genomic loci of Bradyrhizobium japonicum in the initial interaction with soybean, Glycine max (L.) Merr.

PubMed

Wei, Min; Yokoyama, Tadashi; Minamisawa, Kiwamu; Mitsui, Hisayuki; Itakura, Manabu; Kaneko, Takakazu; Tabata, Satoshi; Saeki, Kazuhiko; Omori, Hirofumi; Tajima, Shigeyuki; Uchiumi, Toshiki; Abe, Mikiko; Ohwada, Takuji

2008-08-01

Initial interaction between rhizobia and legumes actually starts via encounters of both partners in the rhizosphere. In this study, the global expression profiles of Bradyrhizobium japonicum USDA 110 in response to soybean (Glycine max) seed extracts (SSE) and genistein, a major soybean-released isoflavone for nod genes induction of B. japonicum, were compared. SSE induced many genomic loci as compared with genistein (5.0 microM), nevertheless SSE-supplemented medium contained 4.7 microM genistein. SSE markedly induced four predominant genomic regions within a large symbiosis island (681 kb), which include tts genes (type III secretion system) and various nod genes. In addition, SSE-treated cells expressed many genomic loci containing genes for polygalacturonase (cell-wall degradation), exopolysaccharide synthesis, 1-aminocyclopropane-1-carboxylate deaminase, ribosome proteins family and energy metabolism even outside symbiosis island. On the other hand, genistein-treated cells exclusively showed one expression cluster including common nod gene operon within symbiosis island and six expression loci including multidrug resistance, which were shared with SSE-treated cells. Twelve putatively regulated genes were indeed validated by quantitative RT-PCR. Several SSE-induced genomic loci likely participate in the initial interaction with legumes. Thus, these results can provide a basic knowledge for screening novel genes relevant to the B. japonicum- soybean symbiosis.

77 FR 41358 - Bayer CropScience LP; Availability of Petition, Plant Pest Risk Assessment, and Environmental...

Federal Register 2010, 2011, 2012, 2013, 2014

2012-07-13

... for Determination of Nonregulated Status of Soybean Genetically Engineered for Herbicide Tolerance... genetically engineered for resistance to the herbicides glyphosate and isoxaflutole. The petition has been... herbicides glyphosate and isoxaflutole. The petition states that this soybean is unlikely to pose a plant...

Automated Geospatial Watershed Assessment Tool (AGWA)

USDA-ARS?s Scientific Manuscript database

The Automated Geospatial Watershed Assessment tool (AGWA, see: www.tucson.ars.ag.gov/agwa or http://www.epa.gov/esd/land-sci/agwa/) is a GIS interface jointly developed by the USDA Agricultural Research Service, the U.S. Environmental Protection Agency, the University of Arizona, and the University ...

Exergames: Theoretical perspective

USDA-ARS?s Scientific Manuscript database

This paper is based on an invited presentation as part of the Exergame Preconference Symposium held in Houston, TX May 19-20, 2014 that was hosted by Tom Baranowski, PhD, and the USDA/ARS Children's Nutrition Research Center, Baylor College of Medicine. Its purpose is to provide insight into the way...

Detection, monitoring, and evaluation of spatio-temporal change in mosquito populations

USDA-ARS?s Scientific Manuscript database

USDA-ARS scientists seek to implement a sampling and global information technology based system that can be used for mosquito detection and trap deployment, to estimate mosquito species composition and distribution in space and time, and for targeting and evaluation of mosquito controls. Knowledge ...

Registration of ‘Endurance’ Wheat

USDA-ARS?s Scientific Manuscript database

‘Endurance’ (Reg. No. CV-994, PI 639233) hard red winter wheat (Triticum aestivum L.) was released to certified seed growers with permission of the Oklahoma Agricultural Experiment Station and the USDA-ARS in 2004. Its name derives from the unique ability to endure and recover from extended and inte...

The NSET Subcommittee | Nano

Science.gov Websites

Charles Ying Nuclear Regulatory Commission (NRC) Brian Thomas* U.S. Department of Agriculture (USDA ) Agriculture Research Service (ARS) James Lindsay Forest Service (FS) World L.S. Nieh National Institute of Food and Agriculture (NIFA) Hongda Chen U.S. International Trade Commission (USITC) Elizabeth R

Important Information to Know When You Are Taking: Warfarin (Coumadin) and Vitamin K

MedlinePlus

... 57 48 30-48 37 29 21 Other foods and beverages not listed in the table may be consumed ... www.ars.usda.gov/nutrientdata Important Drug and Food Information Page ... (Coumadin)? Alcoholic Beverages Alcohol can affect your warfarin (Coumadin) dose and ...

BOTOX and our tax dollars at work

USDA-ARS?s Scientific Manuscript database

This seminar is intended for Masters level graduate students in biology at the University of the Pacific. Topics of the seminar will include information on USDA-ARS research at the Albany location and general background on botulism and neurotoxin biology. In addition, the following FCR unit botulinu...

Bushland Reference ET Calculator with QA/QC capabilities and iPhone/iPad application

USDA-ARS?s Scientific Manuscript database

Accurate daily reference evapotranspiration (ET) values are needed to estimate crop water demand for irrigation management and hydrologic modeling purposes. The USDA-ARS Conservation and Production Research Laboratory at Bushland, Texas developed the Bushland Reference ET (BET) Calculator for calcul...

Inferring geographic origin of barley accessions using molecular markers

USDA-ARS?s Scientific Manuscript database

The USDA Agricultural Research Service (ARS) National Small Grains Collection (NSGC) has 207 landrace barleys obtained from a nursery grown in the Ukraine in 1930 by N.I. Vavilov, many of which have multiple resistance (MR) to disease similar to accessions from Ethiopia. Vavilov collected germplasm ...

New Brahman breed improvement program at STARS

USDA-ARS?s Scientific Manuscript database

At the USDA, ARS, Subtropical Agricultural Research Station (STARS) in Brooksville, Florida we have initiated a new ambitious research project that many believe will have a positive influence on the Brahman breed. This research was developed from a meeting held at STARS that included past and prese...

Evaluation of wild juglans species for crown gall resistance

USDA-ARS?s Scientific Manuscript database

During the 2009 USDA, ARS, National Clonal Germplasm Repository (NCGR) germplasm screening season, we examined a total of ~300 seedlings from "new" genotypes for their resistance to A. tumefaciens. This consisted of seedlings from 89 mother trees representing J. regia and its conspecific taxon, J. s...

Adaptive cover crop implementation and evaluation in the Chesapeake Bay watersheds

USDA-ARS?s Scientific Manuscript database

Four years of applied research, led by the USDA-ARS Choptank River Conservation Reserve Assessment Project (CEAP), have demonstrated that satellite remote sensing, used in combination with cost-share program farm implementation records, can provide a powerful tool for evaluating the nutrient conserv...

AmeriFlux US-Rls RCEW Low Sagebrush

DOE Data Explorer

Flerchinger, Gerald [USDA Agricultural Research Service

2018-01-01

This is the AmeriFlux version of the carbon flux data for the site US-Rls RCEW Low Sagebrush. Site Description - The site is located on the USDA-ARS's Reynolds Creek Experimental Watershed. It is dominated by low sagebrush on land managed by USDI Bureau of Land Management.

Development of North American forb plant materials for rangeland revegetation and restoration

USDA-ARS?s Scientific Manuscript database

Plant materials development for Intermountain rangelands is a primary mission of the USDA-ARS Forage and Range Research Laboratory. Currently there is a significant demand for North American forbs (including legumes) for rangeland revegetation and restoration in the Great Basin, but commercial quan...

Current, Short Term, Future and Star Wars Research Projects for Ornamental Crops

USDA-ARS?s Scientific Manuscript database

The USDA-ARS Greenhouse Production Research Group is involved in fundamental and developmental plant research aimed at developing tools for early stress detection and efficient agrochemical utilization for protected horticulture crops. The group conducts basic plant biology research with the goal o...

Factors affecting transmission rates of 'Candidatus Liberibacter asiaticus' by Asian citrus psyllid

USDA-ARS?s Scientific Manuscript database

The Asian citrus psyllid (ACP), Diaphorina citri, is an important pest because it transmits a bacterium ‘Candidatus Liberibacter asiaticus’ (CLas) responsible for a serious disease of citrus known as Asiatic huanglongbing (citrus greening disease). USDA-ARS researchers recently established a program...

Seed storage effects on germination for two forage kochia cultivars

USDA-ARS?s Scientific Manuscript database

The cultivar ‘Snowstorm’ forage kochia was released by the USDA-ARS in 2012. It is a synthetic cultivar selected for stature, forage production, and adaptation to semiarid environments. Similar to the earlier released (1984) ‘Immigrant’ cultivar it can increase rangeland productivity magnitudes when...

Registration of "MSU E5024" wheat

USDA-ARS?s Scientific Manuscript database

'MSU E5024' (Reg. No. CV-1077, PI 664078) soft white winter wheat (Triticum aestivum L.) was developed by Michigan State University (MSU) AgBioResearch and released in 2011 via exclusive licensing agreements through MSU Technologies. In addition to researchers at MSU, USDA-ARS researchers at the Sof...

Germplasm enhancement for RWA resistance

USDA-ARS?s Scientific Manuscript database

Our contribution to this annual newsletter is a summary of research accomplishments in the past year in germplasm enhancement for RWA resistance in barley at the USDA-ARS, Wheat, Peanut and Other Field Crops Research Unit, Stillwater, OK. RWA is a serious pest of barley in the intermountain regions...

Germplasm enhancement for RWA resistance

USDA-ARS?s Scientific Manuscript database

Our contribution to this annual newsletter is a summary of research accomplishments in the past year in germplasm enhancement for RWA resistance in barley at the USDA-ARS Wheat, Peanut and Other Field Crops Research Unit, Stillwater, OK. RWA is a serious pest of barley in the intermountain regions ...

Germplasm enhancement for RWA resistance

USDA-ARS?s Scientific Manuscript database

Our contribution to this annual newsletter is a summary of research accomplishments in the past year in germplasm enhancement for RWA resistance in barley at the USDA-ARS Wheat, Peanut and Other Field Crops Research Unit, Stillwater, OK. Russian wheat aphid (RWA) is a serious pest of barley in the ...

Registration of 'UFCP 84-1047' Sugarcane

USDA-ARS?s Scientific Manuscript database

UFCP 84-1047 (Reg. No.; PI xxxx) was released by the United States Department of Agriculture-Agricultural Research Services (USDA-ARS), Canal Point (CP), Florida, and the University of Florida (UF) for its potential use in cellulosic ethanol production. UFCP 84-1047 is a high fiber sugarcane (Saccha...

Chemical ecology of Xyleborus glabratus and implications for monitoring and management

USDA-ARS?s Scientific Manuscript database

Abstract Chemical ecology of Xyleborus glabratus and implications for monitoring and management Paul E. Kendra, Wayne S. Montgomery, Jerome Niogret, Elena Q. Schnell, and Nancy D. Epsky USDA-ARS, Subtropical Horticulture Research Station, 13601 Old Cutler Rd., Miami, FL 33158 The redbay ambrosia b...

Trapping systems for Zaprionus indianus (Diptera: Drosophilidae)

USDA-ARS?s Scientific Manuscript database

62nd Annual Meeting of the Entomological Society of America 16-19 November 2014; Portland, OR Title: Trapping systems for Zaprionus indianus (Diptera: Drosophilidae) Nancy D. Epsky, Micah A. Gill, C. Teri Allen, Dong H. Cha, and Peter J. Landolt Nancy D. Epsky USDA-ARS, Subtropical Horticulture...

USDA, ARS, ABDRL Research on Countermeasures for Rift Valley Fever Virus

USDA-ARS?s Scientific Manuscript database

The United State Department of Agriculture, Agriculture Research Service has recently established research program to address countermeasures for of Rift Valley fever (RVF) virus (RVFV). The recent outbreak in Kenya, Tanzania and Somalia demonstrates the impact this virus can have on human and live...

Maximizing industry benefit through cooperation between federal, state and private-sector floricultural research efforts

USDA-ARS?s Scientific Manuscript database

he USDA-ARS Greenhouse Production Research Group was established to provide a federally funded research emphasis on greenhouse crop production. It has focused on broad production issues (nutrition, water management, and energy conservation) by coordinating research between in-house researchers, Uni...

Trash particle distribution measurements in ginned cotton

USDA-ARS?s Scientific Manuscript database

A beltwide commercial cotton gin sampling project was initiated for the 2005-06 and 2006-07 ginning seasons to assess the changes in upland cotton quality during the ginning process and throughout the ginning season. The Cotton Trash Identification System (CTIS) developed at the USDA-ARS Southwester...

75 FR 20806 - Notice of Intent To Grant Exclusive License

Federal Register 2010, 2011, 2012, 2013, 2014

2010-04-21

... DEPARTMENT OF AGRICULTURE Agricultural Research Service Notice of Intent To Grant Exclusive... given that the U.S. Department of Agriculture, Agricultural Research Service, intends to grant to ORO... received on or before May 21, 2010. ADDRESSES: Send comments to: USDA, ARS, Office of Technology Transfer...

76 FR 36513 - Notice of Intent To Grant Exclusive License

Federal Register 2010, 2011, 2012, 2013, 2014

2011-06-22

... DEPARTMENT OF AGRICULTURE Agricultural Research Service Notice of Intent To Grant Exclusive... given that the U.S. Department of Agriculture, Agricultural Research Service, intends to grant to New.... ADDRESSES: Send comments to: USDA, ARS, Office of Technology Transfer, 5601 Sunnyside Avenue, Rm. 4-1174...

75 FR 69916 - Notice of Intent To Grant Exclusive License

Federal Register 2010, 2011, 2012, 2013, 2014

2010-11-16

... DEPARTMENT OF AGRICULTURE Agricultural Research Service Notice of Intent To Grant Exclusive... given that the U.S. Department of Agriculture, Agricultural Research Service, intends to grant to KamTec...: USDA, ARS, Office of Technology Transfer, 5601 Sunnyside Avenue, Rm. 4-1174, Beltsville, Maryland 20705...

78 FR 42929 - Notice of Intent To Grant Exclusive License

Federal Register 2010, 2011, 2012, 2013, 2014

2013-07-18

... DEPARTMENT OF AGRICULTURE Agricultural Research Service Notice of Intent To Grant Exclusive... given that the U.S. Department of Agriculture, Agricultural Research Service, intends to grant to Stark... on or before August 19, 2013. ADDRESSES: Send comments to: USDA, ARS, Office of Technology Transfer...

Alternative cropping systems for sugarcane

USDA-ARS?s Scientific Manuscript database

Planting cover crops during the fallow period prior to planting sugarcane has the potential to influence not only the following sugarcane crop, but the economics of the production system as a whole. Research was conducted at the USDA, ARS, Sugarcane Research Unit at Houma, LA to determine the impac...

Improving Food Safety by Understanding the Evolution of Egg-contaminating Salmonella Enteritidis

USDA-ARS?s Scientific Manuscript database

Improving Food Safety by Understanding the Evolution of Egg-contaminating Salmonella Enteritidis Jean Guard, Veterinary Medical Officer U. S. Department of Agriculture, Athens, GA USA (jean.guard@ars.usda.gov) The curious case of egg contamination by Salmonella enterica serovar Enteritidis S. ...

Technology for Improving Production, Economic Efficiency, Quality, and Sustainability in Peanut Production and Handling

USDA-ARS?s Scientific Manuscript database

USDA ARS National Peanut Research Laboratory has a very diverse scientific staff conducting research to address the needs of the United States peanut industry. Research is conducted in the fields of mycology, chemistry, biochemistry, molecular biology, breeding, agronomy, economics, and engineering....

Technology for Improving Production, Economic Efficiency, Quality and Sustainability in Peanut Production and Handling

USDA-ARS?s Scientific Manuscript database

USDA ARS National Peanut Research Laboratory has a very diverse scientific staff conducting research to address the needs of the United States peanut industry. Research is conducted in the fields of mycology, chemistry, biochemistry, molecular biology, breeding, agronomy, economics, and engineering....

Technology for improving production, economic efficiency, quality, and sustainability in peanut production and handling

USDA-ARS?s Scientific Manuscript database

USDA ARS National Peanut Research Laboratory has a very diverse scientific staff conducting research to address the needs of the United States peanut industry. Research is conducted in the fields of mycology, chemistry, biochemistry, molecular biology, breeding, agronomy, economics, and engineering....

Registration of ‘plateau’ waxy (amylose-free) proso millet

USDA-ARS?s Scientific Manuscript database

The waxy (amylose-free starch) proso millet (Panicum miliaceum L.) cultivar ‘Plateau’ was developed by the Nebraska Agricultural Experiment Station. In addition, faculty and staff from University of Wyoming (UW), Colorado State University (CSU), and USDA-ARS, Lincoln, NE and Akron, CO assisted in tr...

Sustaining the Earth's watersheds, agricultural research data system

USDA-ARS?s Scientific Manuscript database

The USDA-ARS water resources program has developed a web-based data system, STEWARDS: Sustaining the Earth’s Watersheds, Agricultural Research Data System to support research that encompasses a broad range of topics such as water quality, hydrology, conservation, land use, and soils. The data syst...

Repeatability of Sugarcane Selection on Sand and Organic Soils

USDA-ARS?s Scientific Manuscript database

The Canal Point (CP) Sugarcane Cultivar Development Program (a cooperative program between the USDA-ARS, the University of Florida and the Florida Sugarcane League) has been more successful at breeding for cultivars adapted to organic soils (muck) than for those adapted to sand soils. Currently, onl...

USDA-ARS Hydrology Laboratory MISWG Hydrology Workshop

NASA Technical Reports Server (NTRS)

Jackson, T. J.

1982-01-01

Current research being conducted in remote sensing techniques for measuring hydrologic parameters and variables deals with runoff curve numbers (CN), evapotranspiration (ET), and soil moisture. The CN and ET research utilizes visible and infrared measurements. Soil moisture investigations focus on the microwave region of the electromagnetic spectrum.

Stability of Bradyrhizobium japonicum Inoculants after Introduction into Soil

PubMed Central

Brunel, Brigitte; Cleyet-Marel, Jean-Claude; Normand, Philippe; Bardin, Rene

1988-01-01

Bradyrhizobium japonicum USDA 125-Sp, USDA 138, and USDA 138-Sm had been used as inoculants for soybean (Glycine max (L.) Merr.) in soils previously free of B. japonicum. At 8 to 13 years after their release, these strains were reisolated from soil samples. A total of 115 isolates were obtained through nodules, and seven colonies were obtained directly by a serological method. The stability of the inoculants was confirmed by comparing the reisolated cultures with their respective parental strains which had been preserved by being lyophilized or stored on a yeast extract-mannitol agar slant at 4°C. Comparisons were made on morphological and serological characters, carbon compound utilization (8 tested), intrinsic antibiotic resistance (9 tested), and enzymatic activity (19 tested). Mucous and nonmucous isolates of serogroup 125 were analyzed for symbiotic effectiveness and restriction fragment hybridization with a DNA probe. Our data suggest that the B. japonicum inoculants have survived for up to 13 years in the soils without significant mutation except for two reisolates with a slightly increased kanamycin resistance level. Images PMID:16347768

Quality-control materials in the USDA National Food and Nutrient Analysis Program (NFNAP).

PubMed

Phillips, Katherine M; Patterson, Kristine Y; Rasor, Amy S; Exler, Jacob; Haytowitz, David B; Holden, Joanne M; Pehrsson, Pamela R

2006-03-01

The US Department of Agriculture (USDA) Nutrient Data Laboratory (NDL) develops and maintains the USDA National Nutrient Databank System (NDBS). Data are released from the NDBS for scientific and public use through the USDA National Nutrient Database for Standard Reference (SR) ( http://www.ars.usda.gov/ba/bhnrc/ndl ). In 1997 the NDL initiated the National Food and Nutrient Analysis Program (NFNAP) to update and expand its food-composition data. The program included: 1) nationwide probability-based sampling of foods; 2) central processing and archiving of food samples; 3) analysis of food components at commercial, government, and university laboratories; 4) incorporation of new analytical data into the NDBS; and 5) dissemination of these data to the scientific community. A key feature and strength of the NFNAP was a rigorous quality-control program that enabled independent verification of the accuracy and precision of analytical results. Custom-made food-control composites and/or commercially available certified reference materials were sent to the laboratories, blinded, with the samples. Data for these materials were essential to ongoing monitoring of analytical work, to identify and resolve suspected analytical problems, to ensure the accuracy and precision of results for the NFNAP food samples.

Real-Time PCR-Based Quantitation Method for the Genetically Modified Soybean Line GTS 40-3-2.

PubMed

Kitta, Kazumi; Takabatake, Reona; Mano, Junichi

2016-01-01

This chapter describes a real-time PCR-based method for quantitation of the relative amount of genetically modified (GM) soybean line GTS 40-3-2 [Roundup Ready(®) soybean (RRS)] contained in a batch. The method targets a taxon-specific soybean gene (lectin gene, Le1) and the specific DNA construct junction region between the Petunia hybrida chloroplast transit peptide sequence and the Agrobacterium 5-enolpyruvylshikimate-3-phosphate synthase gene (epsps) sequence present in GTS 40-3-2. The method employs plasmid pMulSL2 as a reference material in order to quantify the relative amount of GTS 40-3-2 in soybean samples using a conversion factor (Cf) equal to the ratio of the RRS-specific DNA to the taxon-specific DNA in representative genuine GTS 40-3-2 seeds.

Using microsatellites to understand the physical distribution of recombination on soybean chromosomes.

PubMed

Ott, Alina; Trautschold, Brian; Sandhu, Devinder

2011-01-01

Soybean is a major crop that is an important source of oil and proteins. A number of genetic linkage maps have been developed in soybean. Specifically, hundreds of simple sequence repeat (SSR) markers have been developed and mapped. Recent sequencing of the soybean genome resulted in the generation of vast amounts of genetic information. The objectives of this investigation were to use SSR markers in developing a connection between genetic and physical maps and to determine the physical distribution of recombination on soybean chromosomes. A total of 2,188 SSRs were used for sequence-based physical localization on soybean chromosomes. Linkage information was used from different maps to create an integrated genetic map. Comparison of the integrated genetic linkage maps and sequence based physical maps revealed that the distal 25% of each chromosome was the most marker-dense, containing an average of 47.4% of the SSR markers and 50.2% of the genes. The proximal 25% of each chromosome contained only 7.4% of the markers and 6.7% of the genes. At the whole genome level, the marker density and gene density showed a high correlation (R(2)) of 0.64 and 0.83, respectively with the physical distance from the centromere. Recombination followed a similar pattern with comparisons indicating that recombination is high in telomeric regions, though the correlation between crossover frequency and distance from the centromeres is low (R(2) = 0.21). Most of the centromeric regions were low in recombination. The crossover frequency for the entire soybean genome was 7.2%, with extremes much higher and lower than average. The number of recombination hotspots varied from 1 to 12 per chromosome. A high correlation of 0.83 between the distribution of SSR markers and genes suggested close association of SSRs with genes. The knowledge of distribution of recombination on chromosomes may be applied in characterizing and targeting genes.

Genetic improvement of the soybean fatty acid biosynthesis system to alter the ¿-6/¿-3 ratio in the soybean seed

USDA-ARS?s Scientific Manuscript database

Soybean is an important source of vegetable oil beneficial for human consumption. Several studies have shown that a high '-6/'-3 ratio in edible oil adversely affects human health. Hence, the production of seed oils with a balanced '-6/'-3 ratio is recommended. The cultivated soybeans usually have ...

Consumer perception of risk associated with eating genetically engineered soybeans is less in the presence of a perceived consumer benefit.

PubMed

Brown, J Lynne; Ping, Yanchao

2003-02-01

To determine whether perceived benefit alters personal risk perception associated with eating genetically engineered soybeans, consumer desire for labeling, preferred phrase on a label symbol, and desired information in an educational brochure. Comparison of responses of two consumer groups who completed one of two survey versions. One hundred fifty supermarket shoppers, age 21 years and older, for each survey or n=300 total. Focus groups and a pilot test were used to develop the final survey in which consumers read a description of a genetically engineered soybean with either no obvious consumer benefit or an obvious consumer benefit and then completed a set of attitude questions and evaluated a voluntary label design and educational brochure content. Main outcome measures were mean opinion scores of personal risk and desire for labeling and ranking of desired label phrase and brochure topics. Chi;(2) and t Tests were used. Consumers reading about the soybean with obvious consumer benefit were significantly more comfortable eating these than those reading about the soybean with no obvious consumer benefit (2.9+/-1.1 vs 3.4+/-1.0, respectively; P

On-site detection of stacked genetically modified soybean based on event-specific TM-LAMP and a DNAzyme-lateral flow biosensor.

PubMed

Cheng, Nan; Shang, Ying; Xu, Yuancong; Zhang, Li; Luo, Yunbo; Huang, Kunlun; Xu, Wentao

2017-05-15

Stacked genetically modified organisms (GMO) are becoming popular for their enhanced production efficiency and improved functional properties, and on-site detection of stacked GMO is an urgent challenge to be solved. In this study, we developed a cascade system combining event-specific tag-labeled multiplex LAMP with a DNAzyme-lateral flow biosensor for reliable detection of stacked events (DP305423× GTS 40-3-2). Three primer sets, both event-specific and soybean species-specific, were newly designed for the tag-labeled multiplex LAMP system. A trident-like lateral flow biosensor displayed amplified products simultaneously without cross contamination, and DNAzyme enhancement improved the sensitivity effectively. After optimization, the limit of detection was approximately 0.1% (w/w) for stacked GM soybean, which is sensitive enough to detect genetically modified content up to a threshold value established by several countries for regulatory compliance. The entire detection process could be shortened to 120min without any large-scale instrumentation. This method may be useful for the in-field detection of DP305423× GTS 40-3-2 soybean on a single kernel basis and on-site screening tests of stacked GM soybean lines and individual parent GM soybean lines in highly processed foods. Copyright © 2017 Elsevier B.V. All rights reserved.

Allelopathic effect of methanolic extracts of genetically modified and non-genetically modified canola on soybean.

PubMed

Syed, Kashmala; Shinwari, Zabta Khan

2016-03-01

This study on the effect of genetically modified (GM) and non-GM canola on soybean was carried out for physiological and biochemical biosafety assessment of GM canola. Methanolic extracts of GM and non-GM canola were assessed on seed germination and growth of soybean (Glycine max L.) under sterilized conditions. The extracts applied were of 3, 5, and 10% concentrations. The results showed that methanolic extracts of both GM and non-GM canola improved the germination percentage. However, germination rate index was significantly decreased with concomitant increase in mean germination time of soybean. A significant rate of decrease was observed in root fresh weight while increase in shoot length took place; when treatment of GM canola extracts were applied, however, no effect was observed in shoot fresh weight. A significant increase in protein contents, as well as phenolic, carotenoids, proline, and chlorophyll a content, was observed when different GM canola treatments (3, 5, and 10%) were applied to soybean; however, a significant rate of reduction in chlorophyll b content was observed by the application of GM canola treatment. Similar results were observed for superoxide dismutase, peroxidase, and catalase activities. A significant increase in the sugar content levels was observed when GM canola treatments (3, 5, and 10%) were applied to soybean. © The Author(s) 2013.

Novel FAD2-1A alleles confer an elevated oleic acid phenotype in soybean seeds

USDA-ARS?s Scientific Manuscript database

To identify novel sources of genetic variation for the high oleic acid seed trait, soybean lines containing a higher fraction than normal of oleic acid were identified through a forward-genetic screen of a chemically mutagenized population. Mutant lines contained 30%- 40% of the oil fraction as olei...

Long-term Watershed Database for the Ridge and Valley Physiographic Province: Mahantango Creek Watershed, Pennsylvania, USA

USDA-ARS?s Scientific Manuscript database

Understanding agricultural effects on water quality in rivers and estuaries requires understanding of hydrometeorology and geochemical cycling at various scales over time. The USDA-ARS initiated a hydrologic research program at the Mahantango Creek Watershed (MCW) in 1968, a research watershed at t...