Climate factors affecting fertility after cervical insemination during the first months of the breeding season in Rasa Aragonesa ewes

NASA Astrophysics Data System (ADS)

Santolaria, P.; Yániz, J.; Fantova, E.; Vicente-Fiel, S.; Palacín, I.

2014-09-01

This study was carried out to examine the impact of several climate variables on the pregnancy rate after cervical artificial insemination (AI) of Rasa Aragonesa ewes. Data were derived from 8,977 inseminations in 76 well-managed flocks performed during the first month of the breeding season (July to October). The following data were recorded for each animal: farm, year, month of AI, parity, lambing-treatment interval, inseminating ram, AI technician, and climatic variables such as mean, maximum and minimum temperature, mean and maximum relative humidity, rainfall, and mean and maximum temperature-humidity index (THI) for each day from day 12 before AI to day 14 post-AI. Means were furthermore calculated for the following periods around AI (day 0): -12 to 0, -2 to 0, AI day, 0 to 2, and 0 to 14. Logistic regression analysis indicated that the likelihood of pregnancy decreased when maximum temperature in the 2 days prior to AI was higher than 30 °C (by a factor of 0.81). Fertility was also lower for primiparous ewes and in multiparous ewes with more than five previous parturitions. Other factors with significant impact on fertility were flock, technician, inseminating ram, and a lambing-AI interval longer than 240 days. It was concluded that the 2 days prior to AI seems to be the period when heat stress had the greatest impact on pregnancy rate in Rasa Aragonesa ewes.

The associations of two SNPs in miRNA-146a and one SNP in ZBTB38-RASA2 with the disease susceptibility and the clinical features of the Chinese patients of sCJD and FFI.

PubMed

Gao, Chen; Shi, Qiang; Wei, Jing; Zhou, Wei; Xiao, Kang; Wang, Jing; Shi, Qi; Dong, Xiao-Ping

2018-01-02

Prion diseases are a group of fatal neurodegenerative disorders that affect humans and animals. Besides of the pathological agent, prion, there are some elements that can influence or determine susceptibility to prion infection and the clinical phenotype of the diseases, e.g., the polymorphism in PRNP gene. Another polymorphism in ZBTB38-RASA2 has been observed to be associated with the susceptibility of sporadic Creutzfeldt-Jacob disease (sCJD) in UK. MicroRNAs are endogenous small noncoding RNAs that control gene expression by targeting mRNAs and triggering either translation repression or RNA degradation. In this study, two polymorphic loci in miR-146a (rs2910164 and rs57095329) and one locus in ZBTB38-RASA2 (rs295301) of 561 Chinese patients of sCJD and 31 cases of fatal familial insomnia (FFI) were screened by PCR and sequencing. Our data did not figure out any association of those three SNPs with the susceptibility of sCJD. However, a significant association of the SNP of rs57095329 in miR-146a showed the association with the susceptibility of FFI. Additionally, the SNP of rs57095329 showed statistical significances with the appearances of mutism and the positive of cerebrospinal fluid (CSF) protein 14-3-3 in sCJD patients, while the SNP of ZBTB38-RASA2 was significantly related with the appearance of myoclonus in sCJD patients. It indicates that the SNPs of ZBTB38-RASA2 and miR-146a are not associated with the susceptibility of the Chinese sCJD patients, but may influence the appearances of clinical manifestations somehow.

Hematologic and biochemical reference intervals of free-living Red-Tailed Amazon parrot (Amazona brasiliensis) nestlings on Rasa Island, Paraná, Brazil.

PubMed

Vaz, Frederico F; Locatelli-Dittrich, Rosangela; Beltrame, Olair C; Sipinski, Elenise A B; Abbud, Maria C; Sezerban, Rafael M

2016-12-01

The Red-Tailed Amazon parrot (Amazona brasiliensis) is an endangered species of the Psittaciformes. There is little information about hematologic and biochemical variables of this species. The purpose of this study was to determine hematologic and biochemical RIs for free-living A brasiliensis nestlings on Rasa Island, Paraná, Brazil, and to compare the results between sexes. Thirty-seven parrots were taken from their nests and physically restrained for clinical examination and blood collection. The sex was diagnosed by PCR using the blood samples collected. Reference intervals were determined as recommended by the ASVCP guidelines in healthy nestlings. The difference between groups was analyzed using the Mann-Whitney test or Student's t-test. Sexing revealed 12 females and 25 males. The RIs for the measured variables were as follows: RBC 1.1-2.6 × 10 6 /μL, PCV 29.1-50.3%, HGB 7.2-12.9 g/dL, MCV 152-293 fL, MCHC 22.2-28.4 g/dL, WBC 4.9-28.5 × 10 3 /μL, 1.2-16 × 10 3 /μL, lymphocytes 2.4-18.7 × 10 3 /μL, monocytes 0.0-1.0 × 10 3 /μL, eosinophils 0.0-0.9 × 10 3 /μL, 0.0-1.3 × 10 3 /μL, heterophil:lymphocyte ratio 0.0-2.2, plasma total solids 2.1-3.7 g/dL, uric acid 0.5-2.0 mg/dL, glucose 184.9-284.3 mg/dL, AST 100.3-226.6 U/L, LDH 178.1-927.7 U/L, CK 149.8-1144.0 U/L, cholesterol 137.5-256.9 mg/dL, total protein 1.8-3.0 g/dL, calcium 7.0-8.6 mg/dL, and phosphorus 2.9-6.1 mg/dL. Increased concentrations of cholesterol (P < .05) were observed in females. This is the first study to establish hematologic and biochemical RIs for free-living A brasiliensis nestlings on Rasa Island. Hematologic and biochemical variables are important tools for evaluating the health status of free-living birds, and also support conservation planning for endangered species. © 2016 American Society for Veterinary Clinical Pathology.

Coastal uplift west of Algiers (Algeria): pre- and post-Messinian sequences of marine terraces and rasas and their associated drainage pattern

NASA Astrophysics Data System (ADS)

Authemayou, Christine; Pedoja, Kevin; Heddar, Aicha; Molliex, Stéphane; Boudiaf, Azzedine; Ghaleb, Bassam; Van Vliet Lanoe, Brigitte; Delcaillau, Bernard; Djellit, Hamou; Yelles, Karim; Nexer, Maelle

2017-01-01

The North Africa passive margin is affected by the ongoing convergence between the African and Eurasian plates. This convergence is responsible for coastal uplift, folding, and reverse faulting on new and reactivated faults on the margin. The active deformation is diffuse and thus rather difficult to locate precisely. We aim to determine how a coastal landscape evolve in this geodynamic setting and gain insights into active tectonics. More particularly, we evidence and quantify coastal uplift pattern of the Chenoua, Sahel, and Algiers reliefs (Algeria), using sequences of marine terraces and rasas and computing several morphometric indices from the drainage pattern. Upper and Middle Pleistocene uplift rates are obtained by fossil shoreline mapping and preliminary U/Th dating of associated coastal deposits. Extrapolation of these rates combined to analyses of sea-level referential data and spatial relationships between marine terraces/rasas and other geological markers lead us to tentatively propose an age for the highest coastal indicators (purported the oldest). Values of morphometric indices showing correlations with uplift rate allow us to analyze uplift variation on area devoid of coastal sequence. Geological and geomorphological data suggest that coastal uplift probably occurred since the Middle Miocene. It resulted in the emergence of the Algiers massif, followed by the Sahel ridge massif. The Sahel ridge has asymmetrically grown by folding from west to east and was affected by temporal variation of uplift. Compared to previous study, the location of the Sahel fold axis has been shifted offshore, near the coast. The Chenoua fault vertical motion does not offset significantly the coastal sequence. Mean apparent uplift rates and corrected uplift rates since 120 ka are globally steady all along the coast with a mean value of 0.055 ± 0.015 mm/year (apparent) and of 0.005 ± 0.045 mm/year (corrected for eustasy). Mean apparent coastal uplift rates between 120 and

SNP rs403212791 in exon 2 of the MTNR1A gene is associated with reproductive seasonality in the Rasa aragonesa sheep breed.

PubMed

Calvo, J H; Serrano, M; Martinez-Royo, A; Lahoz, B; Sarto, P; Ibañez-Deler, A; Folch, J; Alabart, J L

2018-06-01

The aim of this study was to characterize and identify causative SNPs in the MTNR1A gene responsible for the reproductive seasonality traits in the Rasa aragonesa sheep breed. A total of 290 ewes (155, 84 and 51 mature, young and ewe lambs, respectively) from one flock were controlled from January to August. The following three reproductive seasonality traits were considered: the total days of anoestrus (TDA) and the progesterone cycling months (P4CM); both ovarian function seasonality traits based on blood progesterone levels; and the oestrus cycling months (OCM) based on oestrous detection, which indicate behavioural signs of oestrous. We have sequenced the total coding region plus 733 and 251 bp from the promoter and 3'-UTR regions, respectively, from the gene in 268 ewes. We found 9 and 4 SNPs associated with seasonality traits in the promoter (for TDA and P4CM) and exon 2 (for the three traits), respectively. The SNPs located in the gene promoter modify the putative binding sites for various trans-acting factors. In exon 2, two synonymous SNPs affect RFLP sites, rs406779174/RsaI (for the three traits) and rs430181568/MnlI (for OCM), and they have been related with seasonal reproductive activity in previous association studies with other breeds. SNP rs400830807, which is located in the 3'-UTR, was associated with the three traits, but this did not modify the putative target sites for ovine miRNAs according to in silico predictions. Finally, the SNP rs403212791 (NW_014639035.1: g.15099004G > A), which is also associated with the three seasonality phenotypes, was the most significant SNP detected in this study and was a non-synonymous polymorphism, leading a change from an Arginine to a Cysteine (R336C). Haplotype analyses confirmed the association results and showed that the effects found for the seasonality traits were caused by the SNPs located in exon 2. We have demonstrated that the T allele in the SNP rs403212791 in the MNTR1A gene is associated with a

Survey of pathogens in threatened wild red-tailed Amazon parrot (Amazona brasiliensis) nestlings in Rasa Island, Brazil.

PubMed

Vaz, Frederico Fontanelli; Serafini, Patrícia Pereira; Locatelli-Dittrich, Rosangela; Meurer, Rafael; Durigon, Edison Luiz; de Araújo, Jansen; Thomazelli, Luciano Matsumiya; Ometto, Tatiana; Sipinski, Elenise Angelotti Bastos; Sezerban, Rafael Meirelles; Abbud, Maria Cecília; Raso, Tânia Freitas

The red-tailed Amazon parrot (Amazona brasiliensis) is a threatened species of psittacine bird that inhabit coastal regions of Brazil. In view of the threat of this species, the aim of this study was to perform a health evaluation in wild nestlings in Rasa Island, determining the prevalence of enterobacteria and infectious agents according to type of nest. Blood samples were collected from 64 birds and evaluated for antibodies of Chlamydia psittaci by commercial dot-blot ELISA. Cloacal and oropharyngeal swabs samples were collected from 23 birds from artificial wooden nests, 15 birds from PVC nests and 2 birds from natural nests for microbiological analysis. Swab samples were collected from 58 parrots for C. psittaci detection by PCR and from 50 nestlings for Avian Influenza, Newcastle Disease and West Nile viruses' detection analysis by real-time RT-PCR. Ten bacterial genera and 17 species were identified, and the most prevalent were Escherichia coli and Klebsiella oxytoca. There was no influence of the type of nest in the nestlings' microbiota. All samples tested by ELISA and PCR were negative. There is currently insufficient information available about the health of A. brasiliensis and data of this study provide a reference point for future evaluations and aid in conservation plans. Copyright © 2017 Sociedade Brasileira de Microbiologia. Published by Elsevier Editora Ltda. All rights reserved.

Hematologic and Biochemical Values of Wild Red-Tailed Amazon Parrot (Amazona brasiliensis) Nestlings With Abnormal Clinical Examination in Rasa Island, Brazil.

PubMed

Vaz, Frederico Fontanelli; Locatelli-Dittrich, Rosangela; Beltrame, Olair Carlos; Sipinski, Elenise Angelotti Bastos; Abbud, Maria Cecília; Sezerban, Rafael Meirelles

2016-12-01

The red-tailed Amazon parrot (Amazona brasiliensis) is an endangered psittacine species, but little information is available about abnormal clinical findings and hematologic and biochemical values of this species, which are important for monitoring the health of this population. To determine hematologic and biochemical values for wild red-tailed parrot nestlings exhibiting abnormal clinical findings, 31 nestlings from the Rasa Island (Paraná State, Southern Brazil) were physically restrained for clinical examination and blood sample collection. On physical examination, 26 birds had mild abnormalities and 5 had severe disorders. Parrots were divided into 5 groups according to the following clinical findings: presence of ectoparasites (group 1), respiratory disorders (group 2), chronic skin lesions caused by fly larvae (group 3), beak disorders (group 4), and severe clinical signs (group 5). Abnormal hematologic and biochemical findings in the nestlings were high total protein in group 3; low values for hemoglobin and mean corpuscular hemoglobin concentration in group 4; low glucose concentration, high mean absolute heterophil count, and high heterophil : lymphocyte ratio in group 5; high concentrations of total plasma protein in groups 3 and 4; and high globulin concentration in groups 3 and 5. In general, the population assessed was in good condition. These results provide a guide to the expected clinical findings associated with hematologic and biochemical concentrations in a population of free-living parrots with abnormal clinical examination findings. The data support the conservation planning and health monitoring of the endangered red-tailed Amazon parrot.

Estudios de Linguistica y Sociolinguistica (Studies in Linguistics and Sociolinguistics).

ERIC Educational Resources Information Center

Cruz, Gerardo Lopez, Comp.; Zamarron, Jose Luis Moctezuma, Comp.

This book contains the following articles on research in the field of general linguistics and sociolinguistics: "Papago Plurals" (Jane H. Hill, Ofella Zepeda); "Typological Characteristics of the Yumanas Languages" (Mauricio J. Mixco); "Observations on Accent in Yutoaztec" (Leopoldo Valinas); "Development of…

Regional Aquifer-System Analysis Program of the U.S. Geological Survey, 1978-1992

USGS Publications Warehouse

Sun, Ren Jen; Johnston, Richard H.

1994-01-01

The major ground-water systems of the United States have been investigated by the U.S. Geological Survey (USGS) through its Regional Aquifer-System Analysis (RASA) Program. During the first 15 years of the program (1978-92), 25 regional aquifer systems, including the most heavily pumped aquifers in the Nation, were intensively studied. As of mid-1992, 18 of the regional aquifer studies are completed or nearly so; 7 of the regional aquifer studies are ongoing, and compilation of a national ground-water atlas is in progress. This report summarizes the status of each RASA study and briefly describes the hydrology of the 25 regional aquifer systems. Important study results and examples of applications of study results are presented for some of the completed RASA investigations. The major contributions of the RASA Program are (1) assembly of data from numerous local studies and long-time data collections into systematic regional data bases; (2) comprehensive descriptions of the geologic, hydrologic, and geochemical characteristics of the regional aquifer systems; and (3) an understanding of how the regional ground-water-flow systems function under natural (predevelopment) and current (developed) conditions. To provide the comprehensive system descriptions, many of the RASA studies present, for the first time, maps depicting the hydrogeologic frameworks, water chemistry, potentiometric surfaces, and other aspects of entire regional aquifer systems. To provide an understanding of how the flow systems function, several of the completed RASA studies provide, for the first time, hydrologic budgets for both predevelopment and developed conditions. The results of the RASA Program are contained in nearly 900 reports published by the USGS, as well as various State and local agencies, and in articles published in scientific journals. A series of U.S. Geological Survey Professional Papers are being published to summarize and synthesize the results of each RASA study.

Home Pregnancy Test Kits: How Readable Are the Instructions?

ERIC Educational Resources Information Center

Holcomb, Carol Ann

At the conclusion of their study on home pregnancy test kits, Valinas and Perlman (1982) suggested that the instructions accompanying the kits be revised to make them easier to read. A study was undertaken to determine the readability of the printed instructions accompanying five home pregnancy test kits (Daisy II, Answer, Acu-Test, Predictor, and…

Resistance and resilience of small-scale recirculating aquaculture systems (RAS) with or without algae to pH perturbation

PubMed Central

Giatsis, Christos; Md Yusoff, Fatimah; Verreth, Johan; Verdegem, Marc

2018-01-01

The experimental set-up of this study mimicked recirculating aquaculture systems (RAS) where water quality parameters such as dissolved oxygen, pH, temperature, and turbidity were controlled and wastes produced by fish and feeding were converted to inorganic forms. A key process in the RAS was the conversion of ammonia to nitrite and nitrite to nitrate through nitrification. It was hypothesized that algae inclusion in RAS would improve the ammonia removal from the water; thereby improving RAS water quality and stability. To test this hypothesis, the stability of the microbiota community composition in a freshwater RAS with (RAS+A) or without algae (RAS-A) was challenged by introducing an acute pH drop (from pH 7 to 4 during three hours) to the system. Stigeoclonium nanum, a periphytic freshwater microalga was used in this study. No significant effect of the algae presence was found on the resistance to the acute pH drop on ammonia conversion to nitrite and nitrite conversion to nitrate. Also the resilience of the ammonia conversion to the pH drop disruption was not affected by the addition of algae. This could be due to the low biomass of algae achieved in the RAS. However, with regard to the conversion step of nitrite to nitrate, RAS+A was significantly more resilient than RAS-A. In terms of overall bacterial communities, the composition and predictive function of the bacterial communities was significantly different between RAS+A and RAS-A. PMID:29659617

Lead, mercury, and arsenic in US- and Indian-manufactured Ayurvedic medicines sold via the Internet.

PubMed

Saper, Robert B; Phillips, Russell S; Sehgal, Anusha; Khouri, Nadia; Davis, Roger B; Paquin, Janet; Thuppil, Venkatesh; Kales, Stefanos N

2008-08-27

Lead, mercury, and arsenic have been detected in a substantial proportion of Indian-manufactured traditional Ayurvedic medicines. Metals may be present due to the practice of rasa shastra (combining herbs with metals, minerals, and gems). Whether toxic metals are present in both US- and Indian-manufactured Ayurvedic medicines is unknown. To determine the prevalence of Ayurvedic medicines available via the Internet containing detectable lead, mercury, or arsenic and to compare the prevalence of toxic metals in US- vs Indian-manufactured medicines and between rasa shastra and non-rasa shastra medicines. A search using 5 Internet search engines and the search terms Ayurveda and Ayurvedic medicine identified 25 Web sites offering traditional Ayurvedic herbs, formulas, or ingredients commonly used in Ayurveda, indicated for oral use, and available for sale. From 673 identified products, 230 Ayurvedic medicines were randomly selected for purchase in August-October 2005. Country of manufacturer/Web site supplier, rasa shastra status, and claims of Good Manufacturing Practices were recorded. Metal concentrations were measured using x-ray fluorescence spectroscopy. Prevalence of medicines with detectable toxic metals in the entire sample and stratified by country of manufacture and rasa shastra status. One hundred ninety-three of the 230 requested medicines were received and analyzed. The prevalence of metal-containing products was 20.7% (95% confidence interval [CI], 15.2%-27.1%). The prevalence of metals in US-manufactured products was 21.7% (95% CI, 14.6%-30.4%) compared with 19.5% (95% CI, 11.3%-30.1%) in Indian products (P = .86). Rasa shastra compared with non-rasa shastra medicines had a greater prevalence of metals (40.6% vs 17.1%; P = .007) and higher median concentrations of lead (11.5 microg/g vs 7.0 microg/g; P = .03) and mercury (20,800 microg/g vs 34.5 microg/g; P = .04). Among the metal-containing products, 95% were sold by US Web sites and 75% claimed Good

Expression of a recombinant human sperm-agglutinating mini-antibody in tobacco (Nicotiana tabacum L.).

PubMed

Xu, Bingfang; Copolla, Michael; Herr, John C; Timko, Michael P

2007-01-01

The murine monoclonal antibody (mAB) S19 recognizes an N-linked carbohydrate antigen designated sperm agglutination antigen-1 (SAGA1) located on the membrane protein CD52. This antigen is added to the sperm surface during epididymal maturation. Binding of the S19 mAB to SAGA-1 causes the rapid agglutination of sperm and blocks pre-fertilization events. Previous studies indicated that the S19 mAB may be a potential specific spermicidal agent (termed a spermistatic) capable of replacing current spermicidal products that contain harsh detergents with harmful side effects. The nucleotide sequences encoding the heavy (H) and light (L) chains of the S19 antibody were cloned. A chimeric gene was constructed using the nucleotide sequences encoding the variable regions of both the H and L chains, and this gene (scFv1 9) was expressed in transgenic tobacco (Nicotiana tabacum L.) to produce a recombinant anti-sperm antibody (RASA). Highest levels of RASA expression were observed in BY-2 plant cell suspension cultures and regenerated N. tabacum cv. Xanthi plants transformant in which the RASA coding sequences were expressed under the control of the Cauliflower Mosaic Virus 35S promoter containing a double-enhancer sequence (2X CaMV 35S). Subsequent modifications of the transgene including the addition of a 5'-untranslated sequence from the tobacco etch virus (TEV leader sequence), N-terminal fusion of the coding region with an endoplasmic reticulum targeting signal of patatin (pat) and C-terminal fusion with the endoplasmic reticulum retention signal peptide KDEL showed further enhancement of RASA expression. The plant-expressed RASA formed intrachain disulfide bonds and was primarily soluble in the cytoplasmic fraction of the cells. Introduction of a poly-histidine (6xHIS) tag in the recombinant RASA protein allowed for rapid purification of the recombinant protein using Ni-NTA chromatography. Optimization of scale-up production and purification of this plant

Lead, Mercury, and Arsenic in US- and Indian-Manufactured Ayurvedic Medicines Sold via the Internet

PubMed Central

Saper, Robert B.; Phillips, Russell S.; Sehgal, Anusha; Khouri, Nadia; Davis, Roger B.; Paquin, Janet; Thuppil, Venkatesh; Kales, Stefanos N.

2009-01-01

Context Lead, mercury, and arsenic have been detected in a substantial proportion of Indian-manufactured traditional Ayurvedic medicines. Metals may be present due to the practice of rasa shastra (combining herbs with metals, minerals, and gems). Whether toxic metals are present in both US- and Indian-manufactured Ayurvedic medicines is unknown. Objectives To determine the prevalence of Ayurvedic medicines available via the Internet containing detectable lead, mercury, or arsenic and to compare the prevalence of toxic metals in US- vs Indian-manufactured medicines and between rasa shastra and non–rasa shastra medicines. Design A search using 5 Internet search engines and the search terms Ayurveda and Ayurvedic medicine identified 25 Web sites offering traditional Ayurvedic herbs, formulas, or ingredients commonly used in Ayurveda, indicated for oral use, and available for sale. From 673 identified products, 230 Ayurvedic medicines were randomly selected for purchase in August–October 2005. Country of manufacturer/Web site supplier, rasa shastra status, and claims of Good Manufacturing Practices were recorded. Metal concentrations were measured using x-ray fluorescence spectroscopy. Main Outcome Measures Prevalence of medicines with detectable toxic metals in the entire sample and stratified by country of manufacture and rasa shastra status. Results One hundred ninety-three of the 230 requested medicines were received and analyzed. The prevalence of metal-containing products was 20.7% (95% confidence interval [CI], 15.2%–27.1%). The prevalence of metals in US-manufactured products was 21.7% (95% CI, 14.6%–30.4%) compared with 19.5% (95% CI, 11.3%–30.1%) in Indian products (P=.86). Rasa shastra compared with non–rasa shastra medicines had a greater prevalence of metals (40.6% vs 17.1%; P=.007) and higher median concentrations of lead (11.5 μg/g vs 7.0 μg/g; P=.03) and mercury (20 800 μg/g vs 34.5 μg/g; P=.04). Among the metal-containing products, 95

Commercial Optics for Space Surveillance and Astronomy

NASA Astrophysics Data System (ADS)

Ackermann, M.; Kopit, E.; McGraw, J.; Zimmer, P.

Since the first days of the space program, there have been both amateur and government satellite watchers. Large, expensive government systems with custom optics are still the most capable, but with modern sensors and high speed computers, amateur trackers are easily pushing the limits of what government systems achieved only a decade ago. A very recent trend in the space world is the emergence of commercial space operations centers. Once the exclusive purview of governments, corporations are now providing orbital environment awareness services to the operators of commercial satellites. The requirement for synoptic satellite observations has led to corporations developing world-wide observing networks. A problem facing both amateur and corporate observers is the limited availability of suitable optical systems. Most observing efforts rely on long focus (f/8 or greater) optical systems with focal reducers, and a somewhat limited field of view. Often, the cameras in use are not ideally matched to the optical system. While there are a few exceptions, the choices are not many. Celestron recently introduced the C-11 RASA optical system, with an 11-inch aperture and an f/2.2 focal ratio. This optical system is designed for dedicated imaging and is ideally suited for both wide-field astronomy and the detection and tracking of satellites. The larger C-14 RASA, to be introduced later this year, was specifically designed for wide-field imaging with large commercial CCDs. It offers greater sensitivity and a wider field of view than the smaller C-11 RASA and should prove to be the instrument of choice for both amateur and corporate satellite observers. We present data from satellite observations with a production model C-11 RASA and estimated performance for the new C-14 RASA.

Bedrock-surface altitude in the midwestern basins and arches region of Indiana, Ohio, Michigan, and Illinois

USGS Publications Warehouse

Bunner, Danny W.

1993-01-01

The Midwestern Basins and Arches Regional Aquifer-Systems Analysis (RASA) is one of 28 projects that were identified by Congress in 1978, after a period of severe drought, to be studied by the U.S. Geological Survey (Sun, 1984).  The Midwestern Basins and Arches RASA study area in parts of Indiana, Ohio, Michigan, and Illinois is defined by either the limestone-shale contact of rocks of Devonian age or by the contact of the land with surface-water bodies (fig. 1).

Bibliography on ground water in glacial-aquifer systems in the Northeastern United States

USGS Publications Warehouse

Wiltshire, Denise A.; Lyford, Forest P.; Cohen, A.J.

1986-01-01

The U.S. Geological Survey established the Regional Aquifer-System Analysis (RASA) program to evaluate major interconnected aquifers or groups of aquifers that share similar characteristics within a region. One of the objectives of the Northeastern Glacial RASA is to provide information on the occurrence and quality of ground water in glacial deposits in ten States: Maine, New Hampshire, Vermont, Massachusetts, Rhode Island, Connecticut, New York, Ohio, Pennsylvania, and New Jersey. To help meet the objectives of the RASA program, an automated bibliographic data base was developed. The data base contains references to ground-water resources of glacial-aquifer systems in the ten States listed above. This bibliography contains more than 700 ground-water related references that date from 1839 through 1984. The bibliography lists books, journal articles, conference proceedings, government and other technical reports, theses, and maps. Unpublished manuscripts, publications in press, newspaper articles, and book reviews are omitted from the bibliography.

Regional Aquifer-System Analysis— Appalachian Valley and Piedmont

USGS Publications Warehouse

,

2004-01-01

The Regional Aquifer-System Analysis Program, RASA, represents a systematic effort to study a number of the Nation’s most important aquifer systems, which, in aggregate, underlie much of the country and which represent an important component of the Nation’s total water supply. In general, the boundaries of these studies are identified by the hydrologic extent of each system and, accordingly, transcend the political subdivisions to which investigations have often arbitrarily been limited in the past. The broad objective for each study is to assemble geologic, hydrologic, and geochemical information, to analyze and develop an understanding of the system, and to develop predictive capabilities that will contribute to the effective management of the system. The use of computer simulation is an important element of the RASA studies to develop an understanding of the natural, undisturbed hydrologic system and the changes brought about in it by human activities and to provide a means of predicting the regional effects of future pumping or other stresses.The final interpretive results of the RASA Program are presented in a series of U.S. Geological Survey Professional Papers that describe the geology, hydrology, and geochemistry of each regional aquifer system. Each study within the RASA Program is assigned a single Professional Paper number beginning with Professional Paper 1400.This paper, Professional Paper 1422, represents the Regional Aquifer-System Analysis— Appalachian Valley and Piedmont. It is published as several individual volumes over several years.

Rate of Learning Models, Mental Models, and Item Response Theory

NASA Astrophysics Data System (ADS)

Pritchard, David E.; Lee, Y.; Bao, L.

2006-12-01

We present three learning models that make different assumptions about how the rate of a student's learning depends on the amount that they know already. These are motivated by the mental models of Tabula Rasa, Constructivist, and Tutoring theories. These models predict the postscore for a given prescore after a given period of instruction. Constructivist models show a close connection with Item Response Theory. Comparison with data from both Hake and MIT shows that the Tabula Rasa models not only fit incomparably better, but fit the MIT data within error across a wide range of pretest scores. We discuss the implications of this finding.

Neogene-Quaternary slow coastal uplift of Western Europe through the perspective of sequences of strandlines from the Cotentin Peninsula (Normandy, France)

NASA Astrophysics Data System (ADS)

Pedoja, K.; Jara-Muñoz, J.; De Gelder, G.; Robertson, J.; Meschis, M.; Fernandez-Blanco, D.; Nexer, M.; Poprawski, Y.; Dugué, O.; Delcaillau, B.; Bessin, P.; Benabdelouahed, M.; Authemayou, C.; Husson, L.; Regard, V.; Menier, D.; Pinel, B.

2018-02-01

The Cotentin Peninsula (Normandy, France) displays sequences of marine terraces and rasas, the latter being wide Late Cenozoic coastal erosion surfaces, that are typical of Western European coasts in Portugal, Spain, France and southern England. Remote sensing imagery and field mapping enabled reappraisal of the Cotentin coastal sequences. From bottom to top, the N Cotentin sequence includes four previously recognized Pleistocene marine terraces (T1 to T4) at elevations < 40 m as well as four higher and older rasas (R1 to R4) reaching 200 ± 5 m in elevation. Low-standing marine terraces are not observed in the central part of the Peninsula and a limited number of terraces are described to the south. The high-standing rasas are widespread all over the peninsula. Such strandline distributions reveal major changes during the Late Cenozoic. Progressive uplift of an irregular sea-floor led to subaerial exposure of bathymetric highs that were carved into rocky platforms, rasas and marine terraces. Eventually, five main islands coalesced and connected to the mainland to the south to form the Cotentin Peninsula. On the basis of previous dating of the last interglacial maximum terrace (i.e. Marine Isotopic Stage, MIS 5e), sequential morphostratigraphy and modelling, we have reappraised uplift rates and derived: (i) mean Upper Pleistocene (i.e. since MIS 5e 122 +/- 6 ka, i.e. kilo annum) apparent uplift rates of 0.04 ± 0.01 mm/yr, (ii) mean Middle Pleistocene eustasy-corrected uplift rates of 0.09 ± 0.03 mm/yr, and (iii) low mean Pleistocene uplift rates of 0.01 mm/yr. Extrapolations of these slow rates combined with geological evidence implies that the formation of the sequences from the Cotentin Peninsula occurred between 3 Ma (Pliocene) and 15 Ma (Miocene), which cannot be narrowed down further without additional research. Along the coasts of Western Europe, sequences of marine terraces and rasas are widespread (169 preserve the MIS 5e benchmark). In Spain, Portugal, S

Tabula Rasa: Case Studies of Teacher Voice.

ERIC Educational Resources Information Center

Roberts, Jo; Dungan, Sherry

Findings of a study that examined teachers' perceptions of and experiences in shared-governance schools are presented in this paper. Data were collected from interviews with over 21 teachers and students in 4 schools that are members of the Georgia-based League of Professional Schools, the impetus of which was the Program for School Improvement,…

Role of media in the preparation of Apamarga Ksharataila.

PubMed

Gohil, Hitaba; Dhruve, Kinnari; Prajapati, P K

2010-07-01

Generally, Tailas and Ghritas have been prepared by using Kalka (paste) and Drava dravya (liquid media usually SwaRasa or Kwatha). However, Apamarga Kshara taila is prepared by using Apamarga Kshara drava (the alkali is obtained after dissolving it in water, after obtaining it by burning, dissolving, and filtration of the same plant). Therefore, to evaluate the role of the media during the preparation, the Taila was prepared in different samples by using the fresh and dry paste of Apamarga along with SwaRasa and Kwatha of Apamarga. All the samples were tested through various analytical parameters, that is, pH, acid value, iodine value, saponification value, and soon. Finally, it was found that Apamarga Kshara taila prepared by using fresh Kalka and Ksharajala was better and it was also an easy pharmaceutical procedure.

Geohydrology of the Dakota Aquifer

NASA Astrophysics Data System (ADS)

Johnson, Ivan

This book is the result of a symposium on the geology and hydrology of the Dakota Aquifer system. The symposium and this proceedings were dedicated to C. V. Theis, who is widely considered to be the father of modern quantitative methods in groundwater hydrology. The aquifer area that is discussed in this series o f papers coincides to a great extent with the Central Midwest Regional Aquifer System Analysis (RASA) project. This was was one of the many RASA projects shown in the map on the cover of the April 14, 1987, Eos. The proceedings provides a multidisciplinary look at details concerning the hydrology and geology overviews, as well as more specialized discussions of the hydrodynamics of petroleum accumulation, geothermal assessment, hydrochemistry, and water use in the Dakota Sandstone and equivalent units.

Rise of the central Andean coast by earthquakes straddling the Moho

NASA Astrophysics Data System (ADS)

Melnick, Daniel

2016-05-01

Surface movements during the largest subduction zone earthquakes commonly drown coastlines. Yet, on geological timescales, coastlines above subduction zones uplift. Here I use a morphometric analysis combined with a numerical model of landscape evolution to estimate uplift rates along the central Andean rasa--a low-relief coastal surface bounded by a steep cliff formed by wave erosion. I find that the rasa has experienced steady uplift of 0.13 +/- 0.04 mm per year along a stretch of more than 2,000 km in length, during the Quaternary. These long-term uplift rates do not correlate with Global Positioning System (GPS) measurements of interseismic movements over the decadal scale, which implies that permanent uplift is not predominantly accumulated during the interseismic period. Instead, the rate of rasa uplift correlates with slip during earthquakes straddling the crust-mantle transition, the Moho. Such deeper earthquakes with magnitude 7 to 8 that occurred between 1995 and 2012 resulted in decimetres of coastal uplift. Slip during these earthquakes is located below the locked portion of the plate interface, and therefore may translate into permanent deformation of the overlying plate, where it causes uplift of the coastline. Thus, lower parts of the plate boundary are stably segmented over hundreds to millions of years. I suggest the coastline marks the surface expression of the transition between the shallow, locked seismogenic domain and the deeper, conditionally stable domain where modest earthquakes build up topography.

Voronovskaja's theorem revisited

NASA Astrophysics Data System (ADS)

Tachev, Gancho T.

2008-07-01

We represent a new quantitative variant of Voronovskaja's theorem for Bernstein operator. This estimate improves the recent quantitative versions of Voronovskaja's theorem for certain Bernstein-type operators, obtained by H. Gonska, P. Pitul and I. Rasa in 2006.

Role of media in the preparation of Apamarga Ksharataila

PubMed Central

Gohil, Hitaba; Dhruve, Kinnari; Prajapati, P. K.

2010-01-01

Generally, Tailas and Ghritas have been prepared by using Kalka (paste) and Drava dravya (liquid media usually SwaRasa or Kwatha). However, Apamarga Kshara taila is prepared by using Apamarga Kshara drava (the alkali is obtained after dissolving it in water, after obtaining it by burning, dissolving, and filtration of the same plant). Therefore, to evaluate the role of the media during the preparation, the Taila was prepared in different samples by using the fresh and dry paste of Apamarga along with SwaRasa and Kwatha of Apamarga. All the samples were tested through various analytical parameters, that is, pH, acid value, iodine value, saponification value, and soon. Finally, it was found that Apamarga Kshara taila prepared by using fresh Kalka and Ksharajala was better and it was also an easy pharmaceutical procedure. PMID:22131746

Prosthetic Rasa: Dance on Wheels and Challenged Kinesthetics

ERIC Educational Resources Information Center

Vimal C., Akhila

2017-01-01

This paper analyses "Bharatanatyam on Wheels" by Ability Unlimited Foundation, Delhi. It interrogates the possibilities and challenges that disability performance presents to codifications in the form and grammar of "Bharatanatyam," a "classical" dance form of India. The Indian classical scriptures of performance…

Lead, Mercury, and Arsenic in US- and Indian-Manufactured Ayurvedic Medicines Sold via the Internet

EPA Science Inventory

Lead, mercury, and arsenic have been detected in a subsantial portion of Indian-manufactured traditional Ayurvedic medicines. Metals may be present due to the parctice of rasa shastra (combining herbs with metals, minerals and gems). Whether toxic metals are present in both US-...

Larger Optics and Improved Calibration Techniques for Small Satellite Observations with the ERAU OSCOM System

NASA Astrophysics Data System (ADS)

Bilardi, S.; Barjatya, A.; Gasdia, F.

OSCOM, Optical tracking and Spectral characterization of CubeSats for Operational Missions, is a system capable of providing time-resolved satellite photometry using commercial-off-the-shelf (COTS) hardware and custom tracking and analysis software. This system has acquired photometry of objects as small as CubeSats using a Celestron 11” RASA and an inexpensive CMOS machine vision camera. For satellites with known shapes, these light curves can be used to verify a satellite’s attitude and the state of its deployed solar panels or antennae. While the OSCOM system can successfully track satellites and produce light curves, there is ongoing improvement towards increasing its automation while supporting additional mounts and telescopes. A newly acquired Celestron 14” Edge HD can be used with a Starizona Hyperstar to increase the SNR for small objects as well as extend beyond the limiting magnitude of the 11” RASA. OSCOM currently corrects instrumental brightness measurements for satellite range and observatory site average atmospheric extinction, but calibrated absolute brightness is required to determine information about satellites other than their spin rate, such as surface albedo. A calibration method that automatically detects and identifies background stars can use their catalog magnitudes to calibrate the brightness of the satellite in the image. We present a photometric light curve from both the 14” Edge HD and 11” RASA optical systems as well as plans for a calibration method that will perform background star photometry to efficiently determine calibrated satellite brightness in each frame.

SECOND THOUGHTS ON AYURVEDA

PubMed Central

Sigdell, Erik

1991-01-01

This article takes up a few “riddles” in the theory of Ayurveda and suggests explanations. It also looks into the Mahabhutas in pharmacology and discusses the real causes of diseases starts with. An interesting graphic representation of the six rasas, is also presented. PMID:22556536

Extraoral Taste Receptor Discovery: New Light on Ayurvedic Pharmacology

PubMed Central

2017-01-01

More and more research studies are revealing unexpectedly important roles of taste for health and pathogenesis of various diseases. Only recently it has been shown that taste receptors have many extraoral locations (e.g., stomach, intestines, liver, pancreas, respiratory system, heart, brain, kidney, urinary bladder, pancreas, adipose tissue, testis, and ovary), being part of a large diffuse chemosensory system. The functional implications of these taste receptors widely dispersed in various organs or tissues shed a new light on several concepts used in ayurvedic pharmacology (dravyaguna vijnana), such as taste (rasa), postdigestive effect (vipaka), qualities (guna), and energetic nature (virya). This review summarizes the significance of extraoral taste receptors and transient receptor potential (TRP) channels for ayurvedic pharmacology, as well as the biological activities of various types of phytochemical tastants from an ayurvedic perspective. The relative importance of taste (rasa), postdigestive effect (vipaka), and energetic nature (virya) as ethnopharmacological descriptors within Ayurveda boundaries will also be discussed. PMID:28642799

Phylogenetic systematics of Schacontia Dyar with descriptions of eight new species (Lepidoptera, Crambidae)

PubMed Central

Goldstein, Paul Z.; Metz, Mark A.; Solis, M. Alma

2013-01-01

Abstract The Neotropical genus Schacontia Dyar (1914) is reviewed and revised to include eleven species. Schacontia replica Dyar, 1914, syn. n. and Schacontia pfeifferi Amsel, 1956, syn. n. are synonymized with Schacontia chanesalis (Druce, 1899) and eight new species are described: Schacontia umbra,sp. n., Schacontia speciosa,sp. n., Schacontia themis, sp. n., Schacontia rasa, sp. n., Schacontia nyx,sp. n., Schacontia clotho, sp. n., Schacontia lachesis, sp. n., and Schacontia atropos, sp. n. Three species, Schacontia medalba, Schacontia chanesalis, and Schacontia ysticalis, are re-described. An analysis of 64 characters (56 binary, 8 multistate; 5 head, 13 thoracic, 13 abdominal, 25 male genitalic, and 8 female genitalic) scored for all Schacontia and three outgroup species (Eustixia pupula Hübner, 1823, Glaphyria sesquistrialis Hübner, 1823, and Hellula undalis (Fabricius, 1781)) retrieved 8 equally most parsimonious trees (L=102, CI=71, RI=84) of which the strict consensus is: [[[[medalba + umbra] + chanesalis] + speciosa] + [ysticalis + [rasa + themis + [atropos + lachesis + nyx + clotho

Genomic localization of the Z/EG transgene in the mouse genome.

PubMed

Colombo, Sophie; Kumasaka, Mayuko; Lobe, Corrinne; Larue, Lionel

2010-02-01

The Z/EG transgenic mouse line, produced by Novak et al., displays tissue-specific EGFP expression after Cre-mediated recombination. The autofluorescence of EGFP allows the visualization of cells of interest displaying Cre recombination. The initial construct was designed such that cells without Cre recombination express the beta-galactosidase marker, facilitating counterselection. We used inverse PCR to identify the site of integration of the Z/EG transgene, to improve the efficiency of homozygous Z/EG mouse production. Recombined cells produced large amounts of EGFP protein, resulting in higher levels of fluorescence and therefore greater contrast with nonrecombined cells. We mapped the transgene to the G1 region of chromosome 5. This random insertion was found to have occurred 230-bp upstream from the start codon of the Rasa4 gene. The insertion of the Z/EG transgene in the C57BL/6 genetic background had no effect on Rasa4 expression. Homozygous Z/EG mice therefore had no obvious phenotype. (c) 2009 Wiley-Liss, Inc.

Mastering the game of Go without human knowledge.

PubMed

Silver, David; Schrittwieser, Julian; Simonyan, Karen; Antonoglou, Ioannis; Huang, Aja; Guez, Arthur; Hubert, Thomas; Baker, Lucas; Lai, Matthew; Bolton, Adrian; Chen, Yutian; Lillicrap, Timothy; Hui, Fan; Sifre, Laurent; van den Driessche, George; Graepel, Thore; Hassabis, Demis

2017-10-18

A long-standing goal of artificial intelligence is an algorithm that learns, tabula rasa, superhuman proficiency in challenging domains. Recently, AlphaGo became the first program to defeat a world champion in the game of Go. The tree search in AlphaGo evaluated positions and selected moves using deep neural networks. These neural networks were trained by supervised learning from human expert moves, and by reinforcement learning from self-play. Here we introduce an algorithm based solely on reinforcement learning, without human data, guidance or domain knowledge beyond game rules. AlphaGo becomes its own teacher: a neural network is trained to predict AlphaGo's own move selections and also the winner of AlphaGo's games. This neural network improves the strength of the tree search, resulting in higher quality move selection and stronger self-play in the next iteration. Starting tabula rasa, our new program AlphaGo Zero achieved superhuman performance, winning 100-0 against the previously published, champion-defeating AlphaGo.

Mastering the game of Go without human knowledge

NASA Astrophysics Data System (ADS)

Silver, David; Schrittwieser, Julian; Simonyan, Karen; Antonoglou, Ioannis; Huang, Aja; Guez, Arthur; Hubert, Thomas; Baker, Lucas; Lai, Matthew; Bolton, Adrian; Chen, Yutian; Lillicrap, Timothy; Hui, Fan; Sifre, Laurent; van den Driessche, George; Graepel, Thore; Hassabis, Demis

2017-10-01

A long-standing goal of artificial intelligence is an algorithm that learns, tabula rasa, superhuman proficiency in challenging domains. Recently, AlphaGo became the first program to defeat a world champion in the game of Go. The tree search in AlphaGo evaluated positions and selected moves using deep neural networks. These neural networks were trained by supervised learning from human expert moves, and by reinforcement learning from self-play. Here we introduce an algorithm based solely on reinforcement learning, without human data, guidance or domain knowledge beyond game rules. AlphaGo becomes its own teacher: a neural network is trained to predict AlphaGo’s own move selections and also the winner of AlphaGo’s games. This neural network improves the strength of the tree search, resulting in higher quality move selection and stronger self-play in the next iteration. Starting tabula rasa, our new program AlphaGo Zero achieved superhuman performance, winning 100-0 against the previously published, champion-defeating AlphaGo.

Mathematical Learning Models that Depend on Prior Knowledge and Instructional Strategies

ERIC Educational Resources Information Center

Pritchard, David E.; Lee, Young-Jin; Bao, Lei

2008-01-01

We present mathematical learning models--predictions of student's knowledge vs amount of instruction--that are based on assumptions motivated by various theories of learning: tabula rasa, constructivist, and tutoring. These models predict the improvement (on the post-test) as a function of the pretest score due to intervening instruction and also…

ISD Model Building: From Tabula Rasa to Apple Peel

ERIC Educational Resources Information Center

Ruark, Benjamin E.

2008-01-01

An evidence-based practice (EBP) model is proposed to replace the more-art-than-science "rope bridge" currently spanning the defining space of a training need and the designing space of a training curriculum. The rope bridge analogy symbolizes a way to address perceived deficiencies and research gaps in the…

Social Responsiveness of Infants. Pediatric Round Table: 2.

ERIC Educational Resources Information Center

Thoman, Evelyn B., Ed.; Trotter, Sharland, Ed.

Conference papers and discussions presented in this volume reflect recent research results that suggest the human infant is not a tabula rasa but an organism endowed at birth with an array of capabilities. Contents focus on several issues, including the possibility that infants have a rich affective life from their earliest days and that even…

Important Historical Events in Reading Instruction.

ERIC Educational Resources Information Center

Ediger, Marlow

This paper lists and dates important historical happenings related to reading instruction. John Locke (1632-1704) was an early advocate that school should be a pleasant place to learn. He believed in the "tabula rasa" theory whereby a student had a mind like a blank sheet with nothing printed initially. Starting from the conception that…

A Lifting Surface Theory for Wings Experiencing Leading-Edge Separation

DTIC Science & Technology

1977-06-30

CSR -CHCRÜ TO SPAN RATIO N-l N’SECIION NO. INDICAIOR FORM SCALES TO KURHALUt E0U»T|CNS Fl • 2.» ALEA /IP|»P| I fi ■ AIFA...Documentation Center Cameron Station, Bldg. 5 Alexandria, VA 22314 12 Nielsen Engineering & Research, Inc. 510 Clyde Avenue Mountain View, CA 94043 1 RASA

Vincenzo LaSalvia | NREL

Science.gov Websites

;Utilization of Tabula Rasa to stabilize bulk lifetimes in n-Cz silicon for high-performance solar cell /SiOx/pc-Si passivated contacts to n-type Si solar cells." Presented at the 40th IEEE Photovoltaic , and P. Stradins. "Heterojunction rear passivated contact for high efficiency n-Cz Si solar cells

Effect of the feeding system on the fatty acid composition, expression of the Δ9-desaturase, Peroxisome Proliferator-Activated Receptor Alpha, Gamma, and Sterol Regulatory Element Binding Protein 1 genes in the semitendinous muscle of light lambs of the Rasa Aragonesa breed

PubMed Central

2010-01-01

Background Conjugated linoleic acids (CLAs) are receiving increasing attention because of their beneficial effects on human health, with milk and meat products derived from ruminants as important sources of CLA in the human diet. SCD gene is responsible for some of the variation in CLA concentration in adipose tissues, and PPARγ, PPARα and SREBP1 genes are regulator of SCD gene. The aim of this work was to evaluate the effect of the feeding system on fatty acid composition, CLA content and relative gene expression of Δ9-desaturase (SCD), Peroxisome Proliferator-Activated Receptor Gamma (PPARγ), Peroxisome Proliferator-Activated Receptor Alpha, (PPARα) and Sterol Regulatory Element Binding Protein (SREBP1) in Rasa Aragonesa light lambs in semitendinous muscle. Forty-four single-born male lambs were used to evaluate the effect of the feeding system, varying on an intensity gradient according to the use of concentrates: 1. grazing alfalfa, 2. grazing alfalfa with a supplement for lambs, 3. indoor lambs with grazing ewes and 4. drylot. Results Both grazing systems resulted in a higher concentration of vaccenic acid (VA), CLA, CLA/VA acid ratio, and a lower oleic content, oleic acid (C18:1)/stearic acid (C18:0) ratio, PUFA n-6/n-3 ratio and SCD expression compared to other diets. In addition feeding system affected the fatty acid composition and SCD expression, possibly due to CLA concentration or the PUFA n-6/n-3 ratio. Both expression of the SCD gene and the feeding system were important factors affecting CLA concentration in the animal's semitendinous muscle. PPARγ, PPARα and SREBP1 expression seemed to be unaffected by the feeding system. Although no significant results were found, PPARγ, PPARα and SREBP1 showed similar expression pattern as SCD. Moreover, the correlation results between SCD expression and PPARγ (p < 0.01), as well as SREBP1 (p < 0.01) expression, may suggest that these genes were affecting SCD expression in a different way. Conclusions

Ground Water Atlas of the United States: Introduction and national summary

USGS Publications Warehouse

Miller, James A.

1999-01-01

The Ground Water Atlas of the United States provides a summary of the most important information available for each principal aquifer, or rock unit that will yield usable quantities of water to wells, throughout the 50 States, Puerto Rico, and the U.S. Virgin Islands. The Atlas is an outgrowth of the Regional Aquifer-System Analysis (RASA) program of the U.S. Geological Survey (USGS), a program that investigated 24 of the most important aquifers and aquifer systems of the Nation and one in the Caribbean Islands (fig. 1). The objectives of the RASA program were to define the geologic and hydrologic frameworks of each aquifer system, to assess the geochemistry of the water in the system, to characterize the ground-water flow system, and to describe the effects of development on the flow system. Although the RASA studies did not cover the entire Nation, they compiled much of the data needed to make the National assessments of ground-water resources presented in the Ground Water Atlas of the United States. The Atlas, however, describes the location, extent, and geologic and hydrologic characteristics of all the important aquifers in the United States, including those not studied by the RASA program. The Atlas is written so that it can be understood by readers who are not hydrologists. Simple language is used to explain technical terms. The principles that control the presence, movement, and chemical quality of ground water in different climatic, topographic, and geologic settings are clearly illustrated. The Atlas is, therefore, useful as a teaching tool for introductory courses in hydrology or hydrogeology at the college level and as an overview of ground-water conditions for consultants who need information about an individual aquifer. It also serves as an introduction to regional and National ground-water resources for lawmakers, personnel of local, State, or Federal agencies, or anyone who needs to understand ground-water occurrence, movement, and quality. The

Feminist Groupwork Feminist Groupwork Groupwork Butler S Wintram Sage SAGE £10.95 , 0-8039-8210-0 [Formula: see text].

PubMed

1991-11-27

Feminist Groupworkis a very thought-provoking book, although the thoughts and speculations stimulated aren't necessarily those intended. I wish that Sandra Butler and Claire Wintram had sorted out their research results with their tabula rasa in tact. When describing the effects on the female psyche of oppression, imbalance of power and exploitation, they accept continually that these stresses are confined to females.

Improvement in Ge Detector Cooling

DTIC Science & Technology

2008-09-01

RASA) Mark IV, is continually evolving. Cryocooler improvements in recent years have resulted in reduced size, reduced maintenance, improved...lifetime and integrity, improve performance, and resolve the need to procure and handle liquid nitrogen (LN2). Both cryocoolers offer advantages over...interval and lifetime have not yet been determined. Expected lifetimes for both cryocooler units are in excess of 50,000 hours. Both systems will be

U.S. Regional Aquifer Analysis Program

NASA Astrophysics Data System (ADS)

Johnson, Ivan

As a result of the severe 1976-1978 drought, Congress in 1978 requested that the U.S. Geological Survey (USGS) initiate studies of the nation's aquifers on a regional scale. This continuing USGS project, the Regional Aquifer System Analysis (RASA) Program, consists of systematic studies of the quality and quantity of water in the regional groundwater systems that supply a large part of the nation's water.

[W. Bion's contribution to the discussion on nature vs. nurture. Early development and psychosis].

PubMed

Spector, Ricardo

2004-01-01

This papers presents a Mother-baby model of interaction that generates the capacity to think, linked to emotional life. With this model is possible to shorten the distances between those who think that mental pathology is caused by constitutional factors and those who use the "tabula rasa" model and assume that the environment failures are the cause of the pathology. The relation between concreteness and abstraction is explored as the basis for the capacity to mental development.

Clinical efficacy of Punarnava Mandura and Dhatri Lauha in the management of Garbhini Pandu (anemia in pregnancy).

PubMed

Khandelwal, Deepika A; Donga, Shilpa B; Dei, Laxmipriya

2015-01-01

India is one of the countries with high prevalence of anemia during pregnancy. Anemia in pregnancy is multifactorial. Iron deficiency anemia is the most common conditions in a pregnant woman. As per ayurvedic classics, this condition occurs due to improper Rasa Dhatu in mother and continuously increasing fetal demands and is considered as Rasa Pradoshajavikara . A large number of Lauha preparations have been used widely for centuries to cure Anemia. To evaluate efficacy of Punarnava Mandura and Dhatri Lauha on Garbhini Pandu . A total 24 pregnant women with symptoms of Garbhini Pandu were randomly divided into two groups (A and B). In Group A ( n = 15) Punarnava Mandura , two tablets (each of 500 mg) thrice a day with one cup (100 ml) of buttermilk and in Group B ( n = 9) Dhatri Lauha , two tablets (each of 500 mg) thrice a day with luke warm water were administered for 90 days. The assessment was done with subjective parameters such as pallor, general weakness, dyspnea, etc., and objective parameters such as hematological parameters. Results were statistically analyzed using Student's t -test. The results revealed that overall clinical improvement was better in Group A when compared to Group B. Hemoglobin was increased in patients of Group A, which was statistically significant. No adverse drug reaction was observed during the treatment period. Punarnava Mandura is more effective on Garbhini Pandu in comparison to Dhatri Lauha .

The acquisition of biological knowledge during childhood: Cognitive conflict or tabula rasa?

NASA Astrophysics Data System (ADS)

Lawson, Anton E.

Clinical interviews were conducted with three elementary school children, who varied in age but not in family or school environment, to determine the extent to which they held naive misconceptions about important biological topics and to determine agewise trends in the development of biological knowledge. Does early biological knowledge acquisition follow a pattern of spontaneous naive theory construction and cognitive conflict or does it follow a pattern of gradual accretion to an initially blank slate? Contrary to findings in the physical sciences, little evidence was found for biological misconceptions as knowledge acquisition appeared to more directly follow the gradual accretion hypothesis with the primary source of that knowledge adult authority rather than personal experience. However, conceptual change teaching is still advocated due to its ability to provoke students to consider and test alternative conceptions (even if they are not their own) as a means of encouraging the development of important general reasoning patterns utilized in the testing of causal hypotheses.

Spin-glass phase in a neutral network with asymmetric couplings

NASA Astrophysics Data System (ADS)

Kree, R.; Widmaier, D.; Zippelius, A.

1988-12-01

The author studies the phase diagram of a neural network model which has learnt with the ADALINE algorithm, starting from tabula non rasa conditions. The resulting synaptic efficacies are not symmetric under an exchange of the pre- and post-synaptic neuron. In contrast to several other models which have been discussed in the literature, he finds a spin-glass phase in the asymmetrically coupled network. The main difference compared with the other models consists of long-ranged Gaussian correlations in the ensemble of couplings.

Generic radiological characterization protocol for surveys conducted for DOE remedial action programs

DOE Office of Scientific and Technical Information (OSTI.GOV)

Berven, B.A.; Cottrell, W.D.; Leggett, R.W.

1986-05-01

This report describes goals and methodology that can be used by radiological survey contractors in surveys at properties associated with the Department of Energy's remedial action programs. The description includes: (1) a general discussion of the history of the remedial action programs; (2) the types of surveys that may be employed by the Radiological Survey Activities (RASA) contractor; (3) generic survey methods that may be used during radiological surveys; and (4) a format for presenting information and data in a survey report. 9 refs.

Regional aquifer systems

NASA Astrophysics Data System (ADS)

The fifth in the American Water Resources Association (AWRA) Monograph series “Regional Aquifer Systems of the United States” has just been published as Monograph Series No. 13, “Aquifers of the Midwestern Area,” edited by L. A. Swain and A. Ivan Johnson. The 238-page publication is available for $18 to AWRA members and $21 for nonmembers.Each AWRA Annual Conference since 1985 has sponsored special seminars describing hydrologic, geochemical, and geologic characteristics of the Regional Aquifer System Analysis (RASA) studies carried out by the U.S. Geological Survey

Critical Review of Rasaratna Samuccaya: A Comprehensive Treatise of Indian Alchemy

PubMed Central

Sumersingh Rajput, Dhirajsingh; Gokarn, Rohit; Jagtap, Chandrashekhar Y; Galib, R; Patgiri, BJ; Prajapati, PK

2016-01-01

Rasaratna Samuccaya (RRS) a 13th century C.E. alchemical treatise, authored by Vāgbhaṭa, is a useful compilation related to preparation and properties of drugs of mineral and metallic origin. This text throws light on the state of Indian expertise in the field of alchemy regarding the extraction, purification, conversion of metals/minerals into therapeutically suitable forms, various instruments developed for alchemical purposes and treatment of numerous diseases by using herbo-mineral preparations. The present work is an attempt to summarize the key features of RRS to highlight its utility and contribution in the development of Indian alchemy. To study and summarize the important, comprehensive and specific points mentioned in RRS and to elaborate the contribution of RRS in the field of Indian alchemy. A critical review of RRS from Suratnojjvalā Hindi commentary by Ambikadatta Shastri was done and the collected information was compared with other available literature of Rasaśāstra. Research of modern science was also utilized to explore some facts mentioned by Vāgbhaṭa. RRS is a precise treatise among available ancient literature. It comprises of all eight branches of Ayurveda, although it mainly deals with therapeutic aspects of Rasaśāstra and emphasizes the use of metals and minerals in treating nearly 68 types of ailments. It contains 30 chapters, 3871 verses and detailed description of 960 formulations. Classification of metals and minerals; description of some new instruments, formulations and averting use of metals and minerals in pregnancy are the key features of RRS. PMID:28182027

RESEARCH PAPERS : Evidence for the Blake event in volcanic rocks from Lipari (Aeolian Archipelago)

NASA Astrophysics Data System (ADS)

Zanella, Elena; Laurenzi, Marinella A.

1998-01-01

Palaeomagnetic and geochronological measurements have been carried out on the late Pleistocene basaltic-andesitic unit of Monte Chirica-Costa Rasa, on the island of Lipari (Aeolian Archipelago). The lava flow sequence is about 10 m thick and has been sampled in detail. Magnetic properties are rather uniform; Curie temperatures of 540° to 580°C, and the saturation IRM reached at applied values of 0.1 T point to titanomagnetite as the main magnetization carrier. Thermal and AF demagnetization have shown the presence of secondary magnetization components. These were removed mostly at 450°-500°C or 20-30 mT, indicating a highly stable ChRM with directions from transitional to reverse. Where a ChRM could not be isolated by application of the demagnetization techniques, the converging remagnetization circles method gave a mean ChRM value fully comparable with that obtained from other methods. 40Ar/39Ar determinations were performed on two lava flows, in the lower and upper parts of the sequence. The former shows a transitional ChRM direction and a whole-rock age of 157+/-12 ka, the latter a reverse direction, a whole-rock age of 143+/-17 ka and a ground-mass age of 128+/-23 ka. The radiometric data and the reconstructed stratigraphy, which indicate ages of 150+/-10 ka and 104+/-3.5 ka, respectively, for the volcanic units at the bottom and top of the Monte Chirica-Costa Rasa unit, suggest that the reverse directions recorded in Lipari are related to the Blake event.

Ground-water levels in intermontane basins of the northern Rocky Mountains, Montana and Idaho

USGS Publications Warehouse

Briar, David W.; Lawlor, S.M.; Stone, M.A.; Parliman, D.J.; Schaefer, J.L.; Kendy, Eloise

1996-01-01

The Regional Aquifer-System Analysis (RASA) program is a series of studies by the U.S. Geological Survey (USGS) to analyze regional ground-water systems that compose a major portion of the Nation's water supply (Sun, 1986). The Northern Rocky Mountains Intermontane Basins is one of the study regions in this national program. The main objectives of the RASA studies are to (1) describe the groundwater systems as they exist today, (2) analyze the known changes that have led to the systems present condition, (3) combine results of previous studies in a regional analysis, where possible, and (4) provide means by which effects of future ground-water development can be estimated.The purpose of this study, which began in 1990, was to increase understanding of the hydrogeology of the intermontane basins of the Northern Rocky Mountains area. This report is Chapter B of a three-part series and shows the general distribution of ground-water levels in basin-fill deposits in the study area. Chapter A (Tuck and others, 1996) describes the geologic history and generalized hydrogeologic units. Chapter C (Clark and Dutton, 1996) describes the quality of ground and surface waters in the study area.Ground-water levels shown in this report were measured primarily during summer 1991 and summer 1992; however, historical water levels were used for areas where more recent data could not be obtained. The information provided allows for the evaluation of general directions of ground-water flow, identification of recharge and discharge areas, and determination of hydraulic gradients within basin-fill deposits.

Results of the survey activities and mobile gamma scanning in Monticello, Utah

DOE Office of Scientific and Technical Information (OSTI.GOV)

Little, C.A.; Berven, B.A.

The town of Monticello, Utah, was once the site of an active mill which processed vanadium ore (1942 to 1948), and uranium ore (1948 to 1960). Properties in the vicinity of that mill have become contaminated with radioactive material from ore processing. The Radiological Survey Activities (RASA) group at Oak Ridge National Laboratory (ORNL) was requested by the Division of Remedial Action Projects (DRAP) in the Department of Energy (DOE) to: (1) identify potentially contaminated properties; (2) assess natural background radiation levels; and (3) rapidly assess the magnitude, extent, and type (i.e. ore, tailings, etc.) of contamination present on thesemore » properties (if any). This survey was conducted by RASA during April 1983. In addition to the 114 properties previously identified from historical information, the ORNL mobile gamma scanning van located 36 new properties exhibiting anomalous gamma radiation levels. Onsite surveys were conducted on 145 of the 150 total properties identified either historically or with the gamma scanning van. Of these 145 properties, 122 of them appeared to have some type of contaminated material present on them; however, only 48 appeared to be contaminated to the extent where they were in excess of Environmental Protection Agency (EPA) criteria (40 CFR 192). Twenty-one other properties were recommended for additional investigation (indoor gamma scanning and radon daughter measurements); of these, only ten required further analysis. This report provides the detailed data and analyses related to the radiological survey efforts performed by ORNL in Monticello, Utah.« less

Chromatin in embryonic stem cell neuronal differentiation.

PubMed

Meshorer, E

2007-03-01

Chromatin, the basic regulatory unit of the eukaryotic genetic material, is controlled by epigenetic mechanisms including histone modifications, histone variants, DNA methylation and chromatin remodeling. Cellular differentiation involves large changes in gene expression concomitant with alterations in genome organization and chromatin structure. Such changes are particularly evident in self-renewing pluripotent embryonic stem cells, which begin, in terms of cell fate, as a tabula rasa, and through the process of differentiation, acquire distinct identities. Here I describe the changes in chromatin that accompany neuronal differentiation, particularly of embryonic stem cells, and discuss how chromatin serves as the master regulator of cellular destiny.

DEVELOPMENT OF RASASASTRA IN MEDIEVAL PERIOD*

PubMed Central

Sharma, Harishankar

1985-01-01

The paper deals with the historical development of Rasasastra in Medieval period. Knowledge of Rasa has been in existence from the time immemorial. Exploration of natural resources for the benefit of human beings is the object of this therapy. It is a medical science recognized during vedic periods for the betterment of even Devas. Medieval period can be treated as a golden age for the development of this science. Looking at its aim and objects, methodology and therapeutics, it was recognized as a medical science with an independent philosophical background in 14th century, by Madhavacharya in his Sarva Darsana Samgraha. PMID:22557472

A Cognitive Neural Architecture Able to Learn and Communicate through Natural Language.

PubMed

Golosio, Bruno; Cangelosi, Angelo; Gamotina, Olesya; Masala, Giovanni Luca

2015-01-01

Communicative interactions involve a kind of procedural knowledge that is used by the human brain for processing verbal and nonverbal inputs and for language production. Although considerable work has been done on modeling human language abilities, it has been difficult to bring them together to a comprehensive tabula rasa system compatible with current knowledge of how verbal information is processed in the brain. This work presents a cognitive system, entirely based on a large-scale neural architecture, which was developed to shed light on the procedural knowledge involved in language elaboration. The main component of this system is the central executive, which is a supervising system that coordinates the other components of the working memory. In our model, the central executive is a neural network that takes as input the neural activation states of the short-term memory and yields as output mental actions, which control the flow of information among the working memory components through neural gating mechanisms. The proposed system is capable of learning to communicate through natural language starting from tabula rasa, without any a priori knowledge of the structure of phrases, meaning of words, role of the different classes of words, only by interacting with a human through a text-based interface, using an open-ended incremental learning process. It is able to learn nouns, verbs, adjectives, pronouns and other word classes, and to use them in expressive language. The model was validated on a corpus of 1587 input sentences, based on literature on early language assessment, at the level of about 4-years old child, and produced 521 output sentences, expressing a broad range of language processing functionalities.

Selected data on characteristics of glacial-deposit and carbonate-rock aquifers, midwestern basins and arches region

USGS Publications Warehouse

Joseph, R.L.; Eberts, S.M.

1994-01-01

-characteristic data for the glacial-deposit and carbonate-rock aquifers within the Midwestern Basin and Arches Region of Shaver (1985) are an essential part of the Midwestern Basins and Arches Regional Aquifer-Systems Analysis (Midwestern Basins and Arches RASA) project of the U.S. Geological Survey (USGS). Specifically, the data are needed to help describe ground-water flow in the regional aquifer system, which isone of the objectives of the Midwestern Basins and Arches RASA project (Bugliosi, 1990). To meet this objective, the Midwestern Basins and Arches RASA began subprojects in the Ohio and Indiana offices of the USGS to collect and compile available aquifer-characteristics data from aquifer tests of the glacial-deposit and carbonate-rock aquifers. The data were not reanalyzed to verify accuracy because of time constraints and insufficient data in many cases.

Keep your feet warm? A cryptic refugium of trees linked to a geothermal spring in an ocean of glaciers.

PubMed

Carcaillet, Christopher; Latil, Jean-Louis; Abou, Sébastien; Ali, Adam; Ghaleb, Bassam; Magnin, Frédéric; Roiron, Paul; Aubert, Serge

2018-06-01

Up to now, the most widely accepted idea of the periglacial environment is that of treeless ecosystems such as the arctic or the alpine tundra, also called the tabula rasa paradigm. However, several palaeoecological studies have recently challenged this idea, that is, treeless environments in periglacial areas where all organisms would have been exterminated near the glacier formed during the Last Glacial Maximum, notably in the Scandinavian mountains. In the Alps, the issue of glacial refugia of trees remains unanswered. Advances in glacier reconstructions show that ice domes did not cover all upper massifs, but glaciers filled valleys. Here, we used fossils of plant and malacofauna from a travertine formation located in a high mountain region to demonstrate that trees (Pinus, Betula) grew with grasses during the Lateglacial-Holocene transition, while the glacier fronts were 200-300 m lower. The geothermal travertine started to accumulate more than 14,500 years ago, but became progressively more meteogene about 11,500 years ago due to a change in groundwater circulation. With trees, land snails (gastropods) associated to woody or open habitats and aquatic mollusc were also present at the onset of the current interglacial, namely the Holocene. The geothermal spring, due to warm water and soil, probably favoured woody glacial ecosystems. This new finding of early tree growth, combined with other scattered proofs of the tree presence before 11,000 years ago in the western Alps, changes our view of the tree distribution in periglacial environments, supporting the notion of tree refugia on nunataks in an ocean of glaciers. Therefore, the tabula rasa paradigm must be revisited because it has important consequences on the global changes, including postglacial plant migrations and biogeochemical cycles. © 2018 John Wiley & Sons Ltd.

Science Priorities of the RadioAstron Space VLBI Mission

NASA Astrophysics Data System (ADS)

Langston, Glen; Kardashev, N.; International Space VLBI Collaboration

2006-12-01

The main scientific goal of the RadioAstron Space VLBI mission is study of Active Galactic Nuclei (AGN), Masers and other astronomical objects with unprecedented angular resolution, up to few millionths of an arc-second. The resolution achieved with RadioAstron will allow study the following phenomena and problems: * Central engine of AGN and physical processes near super massive black holes providing an acceleration of cosmic rays size, velocity and shape of emitting region in the core, spectrum, polarization and variability of emitting components; * Cosmological models, dark matter and dark energy by studying dependence of above mentioned AGN's parameters with redshift, and by observing gravitational lensing; * Structure and dynamics of star and planets forming regions in our Galaxy and in AGN by studying maser and Mega maser radio emission; * Neutron (quark?) stars and black holes in our Galaxy, their structure and dynamics by VLBI and measurements of visibility scintillations, proper motions and parallaxes; * Structure and distribution of interstellar and interplanetary plasma by fringe visibility scintillations of pulsars; The RadioAstron mission uses the satellite SPECTR (astrophysical module), developed by Lavochkin Association of Russian Aviation and Space Agency (RASA). This module will be used in several other scientific missions. The total mass of the scientific payload is about 2500 kg, of which the unfolding parabolic 10-m radio astronomy antenna's mass is about 1500 kg, and scientific package holding the receivers, power supply, synthesizers, control units, frequency standards and data transmission radio system. The mass of the whole system (satellite and scientific payload) to be carried into orbit by the powerful "Zenit-2SB"-"Fregat-2CB" launcher is about 5000 kg. The RadioAstron project is an international collaboration between RASA and ground radio telescope facilities around the world.

Discovery of KPS-1b, a Transiting Hot-Jupiter, with an Amateur Telescope Setup (Abstract)

NASA Astrophysics Data System (ADS)

Benni, P.; Burdanov, A.; Krushinsky, V.; Sokov, E.

2018-06-01

(Abstract only) Using readily available amateur equipment, a wide-field telescope (Celestron RASA, 279 mm f/2.2) coupled with a SBIG ST-8300M camera was set up at a private residence in a fairly light polluted suburban town thirty miles outside of Boston, Massachusetts. This telescope participated in the Kourovka Planet Search (KPS) prototype survey, along with a MASTER-II Ural wide field telescope near Yekaterinburg, Russia. One goal was to determine if higher resolution imaging ( 2 arcsec/pixel) with much lower sky coverage can practically detect exoplanet transits compared to the successful very wide-field exoplanet surveys (KELT, XO, WASP, HATnet, TrES, Qatar, etc.) which used an array of small aperture telescopes coupled to CCDs.

Virtual World Astrosociology

NASA Astrophysics Data System (ADS)

Bainbridge, William Sims

2010-01-01

This essay introduces the opportunity for theory development and even empirical research on some aspects of astrosociology through today's online virtual worlds. The examples covered present life on other planets or in space itself, in a manner that can be experienced by the user and where the user's reactions may simulate to some degree future human behavior in real extraterrestrial environments: Tabula Rasa, Anarchy Online, Entropia Universe, EVE Online, StarCraft and World of Warcraft. Ethnographic exploration of these computerized environments raises many questions about the social science both of space exploration and of direct contact with extraterrestrials. The views expressed in this essay do not necessarily represent the views of the National Science Foundation or the United States.

MISSISSIPPI EMBAYMENT AQUIFER SYSTEM IN MISSISSIPPI: GEOHYDROLOGIC DATA COMPILATION FOR FLOW MODEL SIMULATION.

USGS Publications Warehouse

Arthur, J.K.; Taylor, R.E.

1986-01-01

As part of the Gulf Coast Regional Aquifer System Analysis (GC RASA) study, data from 184 geophysical well logs were used to define the geohydrologic framework of the Mississippi embayment aquifer system in Mississippi for flow model simulation. Five major aquifers of Eocene and Paleocene age were defined within this aquifer system in Mississippi. A computer data storage system was established to assimilate the information obtained from the geophysical logs. Computer programs were developed to manipulate the data to construct geologic sections and structure maps. Data from the storage system will be input to a five-layer, three-dimensional, finite-difference digital computer model that is used to simulate the flow dynamics in the five major aquifers of the Mississippi embayment aquifer system.

A Genetic-Based Scheduling Algorithm to Minimize the Makespan of the Grid Applications

NASA Astrophysics Data System (ADS)

Entezari-Maleki, Reza; Movaghar, Ali

Task scheduling algorithms in grid environments strive to maximize the overall throughput of the grid. In order to maximize the throughput of the grid environments, the makespan of the grid tasks should be minimized. In this paper, a new task scheduling algorithm is proposed to assign tasks to the grid resources with goal of minimizing the total makespan of the tasks. The algorithm uses the genetic approach to find the suitable assignment within grid resources. The experimental results obtained from applying the proposed algorithm to schedule independent tasks within grid environments demonstrate the applicability of the algorithm in achieving schedules with comparatively lower makespan in comparison with other well-known scheduling algorithms such as, Min-min, Max-min, RASA and Sufferage algorithms.

Interactive learning in 2×2 normal form games by neural network agents

NASA Astrophysics Data System (ADS)

Spiliopoulos, Leonidas

2012-11-01

This paper models the learning process of populations of randomly rematched tabula rasa neural network (NN) agents playing randomly generated 2×2 normal form games of all strategic classes. This approach has greater external validity than the existing models in the literature, each of which is usually applicable to narrow subsets of classes of games (often a single game) and/or to fixed matching protocols. The learning prowess of NNs with hidden layers was impressive as they learned to play unique pure strategy equilibria with near certainty, adhered to principles of dominance and iterated dominance, and exhibited a preference for risk-dominant equilibria. In contrast, perceptron NNs were found to perform significantly worse than hidden layer NN agents and human subjects in experimental studies.

The Galactic Plane Exoplanet Survey (GPX) - an Amateur Designed Transiting Exoplanet Wide-Field Search (Abstract)

NASA Astrophysics Data System (ADS)

Benni, P.

2017-06-01

(Abstract only) GPX is designed to search high density star fields where other surveys, such as WASP, HATNet, XO, and KELT would find challenging due to blending of transit like events. Using readily available amateur equipment, a survey telescope (Celestron RASA, 279 mm f/2.2, based in Acton, Massachusetts) was configured first with a SBIG ST-8300M camera then later upgraded to an FLI ML16200 camera and tested under different sampling scenarios with multiple image fields to obtain a 9- to 11-minute cadence per field. The resultant image resolution of GPX is about 2 arcsec/pixel compared to 13.7±23 arcsec/pixel of the aforementioned surveys and the future TESS space telescope exoplanet survey.

Stratigraphic and hydrogeologic framework of the Alabama Coastal Plain

USGS Publications Warehouse

Davis, M.E.

1988-01-01

Tertiary and Cretaceous sand aquifers of the Southeastern United States Coastal Plain comprise a major multlstate aquifer system informally defined as the Southeastern Coastal Plain aquifer system, which is being studied as part of the U.S. Geological Survey's Regional Aquifer System Analysis (RASA) program. The major objectives of each RASA study are to identify, delineate, and map the distribution of permeable clastlc rock, to examine the pattern of ground-water flow within the regional aquifers, and to develop digital computer simulations to understand the flow system. The Coastal Plain aquifers in Alabama are being studied as a part of this system. This report describes the stratlgraphlc framework of the Cretaceous, Tertiary, and Quaternary Systems in Alabama to aid in delineating aquifers and confining units within the thick sequence of sediments that comprises the Southeastern Coastal Plain aquifer system in the State. Stratigraphlc units of Cretaceous and Tertiary age that make up most of the aquifer system in the Coastal Plain of Alabama consist of clastlc deposits of Early Cretaceous age; the Coker and Gordo Formations of the Tuscaloosa Group, Eutaw Formation, and Selma Group of Late Cretaceous age; and the Midway, Wilcox, and Clalborne Groups of Tertiary age. However, stratigraphlc units of late Eocene to Holocene age partially overlie and are hydraulically connected to clastic deposits in southern Alabama. These upper carbonate and clastlc stratlgraphic units also are part of the adjoining Florldan and Gulf Coastal Lowlands aquifer systems. The Coastal Plain aquifer system is underlain by pre-Cretaceous rocks consisting of low-permeabillty sedimentary rocks of Paleozolc, Triassic, and Jurassic age, and a complex of metamorphic and igneous rocks of Precambrian and Paleozolc age similar to those found near the surface in the Piedmont physiographic province. Twelve hydrogeologlc units in the Alabama Coastal Plain are defined--slx aquifers and six confining

Potentiometric surface of the upper Floridan aquifer in Florida and in parts of Georgia, South Carolina, and Alabama, May 1985

USGS Publications Warehouse

Bush, Peter W.; Barr, G. Lynn; Clarke, John S.; Johnston, Richard H.

1987-01-01

A map, constructed as a part of the Floridan Regional Aquifer-System Analysis (RASA), shows the potentiometric surface of the Upper Floridan aquifer for May 1985. It is based on measurements of water level or artesian pressure made in about 2 ,500 wells during the period May 13 to 24, 1985. Only measurements from tightly cased wells open exclusively to the Upper Floridan aquifer were used to make the map. These included 1,425 wells in Florida, 924 in Georgia, 133 in South Carolina, and 21 in Alabama. The potentiometric surface of the Upper Floridan aquifer changed little between 1980 and 1985. Significant water level declines were observed only in southwest Georgia and west-central Florida. Low rainfall during early 1985 and associated pumping for irrigation caused the declines in both areas. (Lantz-PTT)

Water availability and use pilot; methods development for a regional assessment of groundwater availability, southwest alluvial basins, Arizona

USGS Publications Warehouse

Tillman, Fred D.; Cordova, Jeffrey T.; Leake, Stanley A.; Thomas, Blakemore E.; Callegary, James B.

2011-01-01

Executive Summary: Arizona is located in an arid to semiarid region in the southwestern United States and is one of the fastest growing States in the country. Population in Arizona surpassed 6.5 million people in 2008, an increase of 140 percent since 1980, when the last regional U.S. Geological Survey (USGS) groundwater study was done as part of the Regional Aquifer System Analysis (RASA) program. The alluvial basins of Arizona are part of the Basin and Range Physiographic Province and cover more than 73,000 mi2, 65 percent of the State's total land area. More than 85 percent of the State's population resides within this area, accounting for more than 95 percent of the State's groundwater use. Groundwater supplies in the area are expected to undergo further stress as an increasing population vies with the State's important agricultural sector for access to these limited resources. To provide updated information to stakeholders addressing issues surrounding limited groundwater supplies and projected increases in groundwater use, the USGS Groundwater Resources Program instituted the Southwest Alluvial Basins Groundwater Availability and Use Pilot Program to evaluate the availability of groundwater resources in the alluvial basins of Arizona. The principal products of this evaluation of groundwater resources are updated groundwater budget information for the study area and a proof-of-concept groundwater-flow model incorporating several interconnected groundwater basins. This effort builds on previous research on the assessment and mapping of groundwater conditions in the alluvial basins of Arizona, also supported by the USGS Groundwater Resources Program. Regional Groundwater Budget: The Southwest Alluvial Basins-Regional Aquifer System Analysis (SWAB-RASA) study produced semiquantitative groundwater budgets for each of the alluvial basins in the SWAB-RASA study area. The pilot program documented in this report developed new quantitative estimates of groundwater

Quantifying Groundwater Fluctuations in the Southern High Plains with GIS and Geostatistics

NASA Astrophysics Data System (ADS)

Whitehead, B.

2008-12-01

Groundwater as a dwindling non-renewable natural resource has been an important research theme in agricultural studies coupled with human-environment interaction. This research incorporated contemporary Geographic Information System (GIS) methodologies and a universal kriging interpolator (geostatistics) to develop depth to groundwater surfaces for the southern portion of the High Plains, or Ogallala, aquifer. The variations in the interpolated surfaces were used to calculate the volume of water mined from the aquifer from 1980 to 2005. The findings suggest a nearly inverse relationship to the water withdrawal scenarios derived by the United States Geological Survey (USGS) during the Regional Aquifer System Analysis (RASA) performed in the early 1980's. These results advocate further research into regional climate change, groundwater-surface water interaction, and recharge mechanisms in the region, and provide a substantial contribution to the continuing and contentious issue concerning the environmental sustainability of the High Plains.

Renewed uplift of the Central Andes Forearc revealed by coastal evolution during the Quaternary

NASA Astrophysics Data System (ADS)

Regard, Vincent; Saillard, Marianne; Martinod, Joseph; Audin, Laurence; Carretier, Sébastien; Pedoja, Kevin; Riquelme, Rodrigo; Paredes, Paola; Hérail, Gérard

2010-08-01

Most of the Pacific coast of the Central Andes, between 15°S and 30°S, display a wide (a couple of kilometres) planar feature, gently dipping oceanwards and backed by a cliff. This morphology, usually of marine origin, is called rasa, and argues for a recent and spatially continuous uplift of the margin over the 1500-km-long coastal region we describe. The cliff foot is found at a similar elevation (˜ 110 m amsl) all over the studied area, with the exception of peninsulas such as the Mejillones Peninsula. The compilation of published chronological data and the extrapolation of re-appraised uplift rates provide evidence for a common cliff foot age of around 400 ka (i.e., Marine Isotopic Stage MIS 11). This, together with other geological constraints, indicates a Quaternary renewal of uplift in the Central Andes Forearc after a late Pliocene quiescence or subsidence.

Mathematical learning models that depend on prior knowledge and instructional strategies

NASA Astrophysics Data System (ADS)

Pritchard, David E.; Lee, Young-Jin; Bao, Lei

2008-06-01

We present mathematical learning models—predictions of student’s knowledge vs amount of instruction—that are based on assumptions motivated by various theories of learning: tabula rasa, constructivist, and tutoring. These models predict the improvement (on the post-test) as a function of the pretest score due to intervening instruction and also depend on the type of instruction. We introduce a connectedness model whose connectedness parameter measures the degree to which the rate of learning is proportional to prior knowledge. Over a wide range of pretest scores on standard tests of introductory physics concepts, it fits high-quality data nearly within error. We suggest that data from MIT have low connectedness (indicating memory-based learning) because the test used the same context and representation as the instruction and that more connected data from the University of Minnesota resulted from instruction in a different representation from the test.

Investigation of antihyperglycaemic activity of banana (Musa sp. var. Nanjangud rasa bale) pseudostem in normal and diabetic rats.

PubMed

Ramu, Ramith; Shirahatti, Prithvi S; Zameer, Farhan; Prasad, M N Nagendra

2015-01-01

Postprandial hyperglycaemia in diabetes could be ameliorated by inhibiting intestinal α-glucosidases, responsible for starch hydrolysis and its absorption. Different parts of banana have been in use in conventional medicinal formulations since ancient times. Its role as an antihyperglycaemic agent has also been studied. This study was aimed at explaining the mechanism of hypoglycaemic effect by ethanol extract of banana pseudostem (EE). Additionally, studies on the active components involved in the effect have also been attempted. EE significantly inhibited mammalian intestinal α-glucosidases and yeast α-glucosidase (IC50 , 8.11 ± 0.10 µg mL(-1) ). The kinetic studies showed that EE inhibited sucrase, maltase and and p-nitrophenyl-α-d-glucopyranoside hydrolysis by mixed-type inhibition. Further, in vivo studies identified that the oral administration (100-200 mg kg(-1) body weight) of EE significantly suppressed the maltose/glucose-induced postprandial plasma glucose elevation and wielded an antihyperglycaemic effect in normal and alloxan-induced diabetic rats. GC-MS analysis of EE revealed high levels of β-sitosterol (29.62%), stigmasterol (21.91%), campesterol (10.85%) and other compounds. These findings suggest that EE might exert an anti-diabetic effect by inhibition of α-glucosidases from the intestine, in turn suppressing the carbohydrate absorption into the bloodstream. Hence the results extend a foundation to the future prospects of the food-derived enzyme inhibitors in treatment of diabetes. © 2014 Society of Chemical Industry.

Investigation of Antihyperglycaemic Activity of Banana (Musa sp. Var. Nanjangud rasa bale) Flower in Normal and Diabetic Rats.

PubMed

Ramu, Ramith; Shirahatti, Prithvi S; Dhanabal, S P; Zameer, Farhan; Dhananjaya, B L; Nagendra Prasad, M N

2017-10-01

The vital enzymes of starch digestion and absorption are intestinal α-glucosidases and their inhibition improves postprandial hyperglycaemia, constituting an effective mode of therapy in diabetes. The present study was designed to assess the inhibitory potential of ethanol extract of banana flower (EF) on mammalian α-glucosidases and its pharmacological effects on postprandial hyperglycaemia in normal and alloxan-induced diabetic rats. EF was evaluated for its inhibitory potential and mode of inhibition on mammalian α-glucosidases. Further, the role of EF and its constituents Umbelliferone (C1) and Lupeol (C2) on glucose uptake using isolated rat hemi-diaphragm and insulinotropic activity using RINm5F (rat insulinoma) cell lines were determined. The phytocomponents in EF were also evaluated using GC-MS. EF illustrated a dose-dependent inhibition for rat intestinal sucrase, maltase and p -nitrophenyl-α-D-glucopyranoside (pNPG) hydrolysis (IC 50 values: 18.76±0.22, 25.54±0.10 and 76.42±1.12 µg/ml, respectively) and the mode of inhibition was non-competitive with low Ki values. Oral administration (100-200 mg/kg b.wt.) of EF significantly improved the maltose/glucose-induced postprandial hyperglycaemia in normal and alloxan-induced diabetic rats. EF, C1 and C2 exhibited stimulation of glucose uptake and a dose-dependent glucose-induced insulin secretion at both 4.5 and 16.7 mM glucose concentrations. Further, GC-MS analysis revealed significant levels of steroids (25.61%), diazoprogesterone (21.31%), sesquiterpene (11.78%) and other phytocomponents. EF inhibited α-glucosidases besides promoting glucose uptake and insulin secretion, resulting in antihyperglycaemic effect determining EF as a potent anti-diabetic agent. Abbreviations used: mg/dl: milligramsper deciliter, mM: millimolar, b.wt.: body weight.

The emotional fundamentals of personality and the higher affective polarities of mind. Comment on "Personality from a cognitive-biological perspective" by Y. Neuman

NASA Astrophysics Data System (ADS)

Panksepp, Jaak; Davis, Ken

2014-12-01

In brain-based personality theory, two things seem certain: i) the evolved functional organization of our subcortical affective mind, and ii) the diverse potentials for developmental programming of our high cognitive minds (i.e., our initially empty - tabula rasa like - neocortical spaces are largely developmentally programed to manifest higher mental abilities). In considering these two global aspects of brain-mind functions, we can be confident that primal subcortical functions (e.g., the capacity for raw emotions/affects, evident in all vertebrate species) evolved. Indeed, ancient creatures such as lamprey eels, with whom we shared ancestry 560 million years ago, still posses most neural systems that are homologous to those that constitute our own primal affective capacities [1]. Considering that primal emotional affects arise from such systems, there appears to be some remarkable continuity in our primal mental origins. The neural foundations of human emotional feelings, long neglected by academic psychology (for lack of empirical accessibility), may contain the rudimentary neuro-affective substrates of personality [2].

Management of tennis elbow by Agnikarma.

PubMed

Mahanta, Vyasadeva; Dudhamal, Tukaram S; Gupta, Sanjay Kumar

2013-01-01

Tennis elbow is a painful condition and causes restricted movement of forearm which requires treatment for long period. Till date only symptomatic treatments are available like use of anti-inflammatory analgesic drugs, steroids injection, physiotherapy, exercise etc. But none of these provide satisfactory result. Long term use of anti-inflammatory, analgesic drugs and steroids injection is also not free from the adverse effects. Usually, 'wait-and-see policy' of treatment guideline is recommended in most of medical texts. According to Ayurveda, snayugata vata can be correlated with the condition of tennis elbow. Sushruta has advised Agnikarma for disorders of snayu (ligaments and tendons), asthi (bone), siddhi (joints) etc. Hence, in this study a case of tennis elbow (snayugata vata) was treated by Agnikarma, along with administration of powder of Ashwagandha and Navajivana Rasa orally, for a period of 03 weeks. This combination therapy provided considerable relief in pain and movement of the elbow joint.

Soul man meets the blind watchmaker: C.G. Jung and neo-Darwinism.

PubMed

Pietikainen, Petteri

2003-01-01

C.G. Jung's name has recently been connected with neo-Darwinian theories. One major reason for this connection is that Jungian psychology is based on the suggestion that there exists a universal structure of the mind that has its own evolutionary history. On this crucial point, Jungians and neo-Darwinian evolutionary psychologists agree. However, it will be argued in this paper that, although Jungian psychology opposes the "tabula rasa" doctrine (mind as a blank state), Jung cannot be regarded as the founding father of evolutionary psychology. From the scientific perspective, Jung's biological assumptions are simply untenable and have been for many decades. In his attempt to fuse biology, spirit, and the unconscious, Jung ended in speculative flights of imagination that bear no resemblance to modern neo-Darwinian theories. The premise of the paper is that, when Jungian psychology is presented to us as a scientific psychology that has implications for the development of neo-Darwinian psychology, we should be on guard and examine the evidence.

Three years of operational experience from Schauinsland CTBT monitoring station.

PubMed

Zähringer, M; Bieringer, J; Schlosser, C

2008-04-01

Data from three years of operation of a low-level aerosol sampler and analyzer (RASA) at Schauinsland monitoring station are reported. The system is part of the International Monitoring System (IMS) for verification of the Comprehensive Nuclear-Test-Ban Treaty (CTBT). The fully automatic system is capable to measure aerosol borne gamma emitters with high sensitivity and routinely quantifies 7Be and 212Pb. The system had a high level of data availability of 90% within the reporting period. A daily screening process rendered 66 tentative identifications of verification relevant radionuclides since the system entered IMS operation in February 2004. Two of these were real events and associated to a plausible source. The remaining 64 cases can consistently be explained by detector background and statistical phenomena. Inter-comparison with data from a weekly sampler operated at the same station shows instabilities of the calibration during the test phase and a good agreement since certification of the system.

Assessment of Nutritional Quality and Global Antioxidant Response of Banana (Musa sp. CV. Nanjangud Rasa Bale) Pseudostem and Flower

PubMed Central

Ramu, Ramith; Shirahatti, Prithvi S.; Anilakumar, K. R.; Nayakavadi, Shivasharanappa; Zameer, Farhan; Dhananjaya, B. L.; Nagendra Prasad, M. N.

2017-01-01

Background: The assessment of the nutritional composition and phytochemical screening of banana pseudostem (PB) and flower (FB) advocate this nonconventional food source for routine consumption, considering its various health benefits. Objectives: The aim is to assess the proximate nutrient composition, fatty acids, minerals, amino acid profile, and global antioxidant response (GAR) of PB and FB. Methods: Standard analytical procedures were used to determine the nutritional quality and GAR of PB and FB. Results: The chemical analysis illustrated that functional profile (water holding capacity, oil holding capacity, swelling power, and solubility), and proximate (ash, moisture, protein, fat, dietary fiber, and carbohydrate) contents were substantially high in FB than PB. With a well-proportionate amino acid profile, PB (0.56) and FB (0.54) comprised of a high ratio of essential to nonessential amino acids than those of FAO/WHO requirement (0.38). The mineral analysis revealed that PB and FB were rich in macro and micro minerals in the order K > Ca > Mg > P > Na and K > Mg > Na > Ca > P, respectively. Linoleic acid was found to be the major component in PB and FB. Besides, total antioxidant activity conducted for PB and FB by GAR method, measuring both bio-accessible and insoluble fractions, revealed that the soluble fraction fared better than the chemical extracts. Conclusion: The results revealed high nutritional qualities of the byproducts of banana and the low cost of its production promotes their use as a prospective nonconventional food resource with high nutraceutical value. SUMMARY AOAC: Association of Analytical CommunitiesFAO/WHO: Food and Agriculture Organization of the United Nations/World health organization Abbreviations Used: Banana flower was more potent than banana pseudostem in terms of its nutritional quality and total antioxidant capacity affirming their usefulness (of both the secondary products) in the pharmaceutical sector as a nutritional supplement due to the health-related properties of dietary fibre and associated bioactive compounds. PMID:29333047

Assessment of Nutritional Quality and Global Antioxidant Response of Banana (Musa sp. CV. Nanjangud Rasa Bale) Pseudostem and Flower.

PubMed

Ramu, Ramith; Shirahatti, Prithvi S; Anilakumar, K R; Nayakavadi, Shivasharanappa; Zameer, Farhan; Dhananjaya, B L; Nagendra Prasad, M N

2017-12-01

The assessment of the nutritional composition and phytochemical screening of banana pseudostem (PB) and flower (FB) advocate this nonconventional food source for routine consumption, considering its various health benefits. The aim is to assess the proximate nutrient composition, fatty acids, minerals, amino acid profile, and global antioxidant response (GAR) of PB and FB. Standard analytical procedures were used to determine the nutritional quality and GAR of PB and FB. The chemical analysis illustrated that functional profile (water holding capacity, oil holding capacity, swelling power, and solubility), and proximate (ash, moisture, protein, fat, dietary fiber, and carbohydrate) contents were substantially high in FB than PB. With a well-proportionate amino acid profile, PB (0.56) and FB (0.54) comprised of a high ratio of essential to nonessential amino acids than those of FAO/WHO requirement (0.38). The mineral analysis revealed that PB and FB were rich in macro and micro minerals in the order K > Ca > Mg > P > Na and K > Mg > Na > Ca > P, respectively. Linoleic acid was found to be the major component in PB and FB. Besides, total antioxidant activity conducted for PB and FB by GAR method, measuring both bio-accessible and insoluble fractions, revealed that the soluble fraction fared better than the chemical extracts. The results revealed high nutritional qualities of the byproducts of banana and the low cost of its production promotes their use as a prospective nonconventional food resource with high nutraceutical value. AOAC: Association of Analytical CommunitiesFAO/WHO: Food and Agriculture Organization of the United Nations/World health organization Abbreviations Used: Banana flower was more potent than banana pseudostem in terms of its nutritional quality and total antioxidant capacity affirming their usefulness (of both the secondary products) in the pharmaceutical sector as a nutritional supplement due to the health-related properties of dietary fibre and associated bioactive compounds.

Determination of mercury in ayurvedic dietary supplements that are not rasa shastra using the hydra-C direct mercury analyzer.

PubMed

Abdalla, Amir A; Smith, Robert E

2013-01-01

Mercury has been determined in Ayurvedic dietary supplements (Trifala, Trifala Guggulu, Turmeric, Mahasudarshan, Yograj, Shatawari, Hingwastika, Shatavari, and Shilajit) by inductively coupled plasma-mass spectrometry (ICP-MS) and direct mercury analysis using the Hydra-C direct mercury analyzer (Teledyne Leeman Labs Hudson, NH, USA). Similar results were obtained from the two methods, but the direct mercury analysis method was much faster and safer and required no microwave digestion (unlike ICP-MS). Levels of mercury ranged from 0.002 to 56  μ g/g in samples of dietary supplements. Standard reference materials Ephedra 3240 and tomato leaves that were from the National Institute of Standard and Technology (NIST) and dogfish liver (DOLT3) that was from the Canadian Research Council were analyzed using Hydra-C method. Average mercury recoveries were 102% (RSD% 0.0018), 100% (RSD% 0.0009), and 101% (RSD% 0.0729), respectively. Hydra-C method Limit Of Quantitation was 0.5 ng.

Determination of Mercury in Ayurvedic Dietary Supplements That Are Not Rasa Shastra Using the Hydra-C Direct Mercury Analyzer

PubMed Central

Abdalla, Amir A.; Smith, Robert E.

2013-01-01

Mercury has been determined in Ayurvedic dietary supplements (Trifala, Trifala Guggulu, Turmeric, Mahasudarshan, Yograj, Shatawari, Hingwastika, Shatavari, and Shilajit) by inductively coupled plasma-mass spectrometry (ICP-MS) and direct mercury analysis using the Hydra-C direct mercury analyzer (Teledyne Leeman Labs Hudson, NH, USA). Similar results were obtained from the two methods, but the direct mercury analysis method was much faster and safer and required no microwave digestion (unlike ICP-MS). Levels of mercury ranged from 0.002 to 56 μg/g in samples of dietary supplements. Standard reference materials Ephedra 3240 and tomato leaves that were from the National Institute of Standard and Technology (NIST) and dogfish liver (DOLT3) that was from the Canadian Research Council were analyzed using Hydra-C method. Average mercury recoveries were 102% (RSD% 0.0018), 100% (RSD% 0.0009), and 101% (RSD% 0.0729), respectively. Hydra-C method Limit Of Quantitation was 0.5 ng. PMID:23710181

Framework for regional synthesis of water-quality data for the glacial aquifer system in the United States

USGS Publications Warehouse

Warner, Kelly L.; Arnold, Terri L.

2005-01-01

The glacial aquifer system is the largest principal aquifer in aerial extent and ground-water use for public supply in the United States. A principal aquifer is defined as a regionally extensive aquifer or aquifer system that has the potential to be used as a source of potable water (U.S. Geological Survey, 2003). Multiple aquifers often are grouped into large, extensive aquifer systems such as the glacial aquifer system. The glacial aquifer system is considered here to include all unconsolidated aquifers above bedrock north of the line of continental glaciation throughout the country (fig. 1). Total withdrawals from the glacial aquifer system were 3,560 million gallons per day in 2000, which constitutes almost 5 percent of total withdrawals from all aquifers in the United States (Maupin and Barber, 2005). Approximately 41 million people relied on the glacial aquifer for public supply and domestic use in 2000. The U.S. Geological Survey National Water-Quality Assessment (NAWQA) Program began assessing the glacial aquifer system in 1991. The assessment of water-quality data on a regional scale, such as the glacial aquifer system, is coincident with the regional framework established by the Regional Aquifer-System Analysis Program (RASA) (Sun and others, 1997). From 1978 to 1995, the RASA Program systematically evaluated 25 of the Nation's most important groundwater systems including studies in the glacial aquifer system in the northeast, Midwest, and northern Midwest United States. The NAWQA Program is building on the work of the RASA Program to study the water quality of 16 of the most important ground-water systems (Lapham and others, 2005). Over 1,700 water-quality samples have been collected by the NAWQA Program from 1991 to 2004 to assess the glacial aquifer system. This large data set is unique in that the samples have been collected using a consistent sampling protocol, and multiple nested samples. The nested samples address the recently recharged shallow

Taboo or Tabula Rasa: Cross-Racial/Cultural Dating Preferences Amongst Chinese, Japanese, and Korean International Students in an American University

ERIC Educational Resources Information Center

Ritter, Zachary S.

2015-01-01

International students bring racial attitudes and group preferences that affect campus climates. Forty-seven Chinese, Japanese, and Korean college international students were interviewed, regarding their perceptions of race/ethnicity and nationality, when it comes to dating and romantic relationships on college campuses. Thirty-five out of…

Warm oceanographic anomalies and fishing pressure drive seabird nesting north

PubMed Central

Velarde, Enriqueta; Ezcurra, Exequiel; Horn, Michael H.; Patton, Robert T.

2015-01-01

Parallel studies of nesting colonies in Mexico and the United States show that Elegant Terns (Thalasseus elegans) have expanded from the Gulf of California Midriff Island Region into Southern California, but the expansion fluctuates from year to year. A strong inverse relationship between nesting pairs in three Southern California nesting areas [San Diego saltworks, Bolsa Chica Ecological Reserve, and Los Angeles Harbor (1991 to 2014)] and Isla Rasa in the Midriff (1980 to 2014) shows that terns migrate northward when confronting warm oceanographic anomalies (>1.0°C), which may decrease fish availability and hamper nesting success. Migration pulses are triggered by sea surface temperature anomalies localized in the Midriff and, secondarily, by reductions in the sardine population as a result of intensive fishing. This behavior is new; before year 2000, the terns stayed in the Midriff even when oceanographic conditions were adverse. Our results show that terns are responding dynamically to rapidly changing oceanographic conditions and fish availability by migrating 600 km northwest in search of more productive waters. PMID:26601193

Global Diversity of the Placozoa

PubMed Central

Eitel, Michael; Osigus, Hans-Jürgen; DeSalle, Rob; Schierwater, Bernd

2013-01-01

The enigmatic animal phylum Placozoa holds a key position in the metazoan Tree of Life. A simple bauplan makes it appear to be the most basal metazoan known and genetic evidence also points to a position close to the last common metazoan ancestor. Trichoplax adhaerens is the only formally described species in the phylum to date, making the Placozoa the only monotypic phylum in the animal kingdom. However, recent molecular genetic as well as morphological studies have identified a high level of diversity, and hence a potential high level of taxonomic diversity, within this phylum. Different taxa, possibly at different taxonomic levels, are awaiting description. In this review we firstly summarize knowledge on the morphology, phylogenetic position and ecology of the Placozoa. Secondly, we give an overview of placozoan morphological and genetic diversity and finally present an updated distribution of placozoan populations. We conclude that there is great potential and need to erect new taxa and to establish a firm system for this taxonomic tabula rasa. PMID:23565136

A comparison of plan-based and abstract MDP reward shaping

NASA Astrophysics Data System (ADS)

Efthymiadis, Kyriakos; Kudenko, Daniel

2014-01-01

Reward shaping has been shown to significantly improve an agent's performance in reinforcement learning. As attention is shifting away from tabula-rasa approaches many different reward shaping methods have been developed. In this paper, we compare two different methods for reward shaping; plan-based, in which an agent is provided with a plan and extra rewards are given according to the steps of the plan the agent satisfies, and reward shaping via abstract Markov decision process (MDPs), in which an abstract high-level MDP of the environment is solved and the resulting value function is used to shape the agent. The comparison is conducted in terms of total reward, convergence speed and scaling up to more complex environments. Empirical results demonstrate the need to correctly select and set up reward shaping methods according to the needs of the environment the agents are acting in. This leads to the more interesting question, is there a reward shaping method which is universally better than all other approaches regardless of the environment dynamics?

Bibliography of Regional Aquifer-System Analysis Program of the US Geological Survey, 1978-96

USGS Publications Warehouse

Sun, Ren Jen; Weeks, John B.; Grubb, Hayes F.

1997-01-01

The Regional Aquifer-System Analysis (RASA) Program of the U.S. Geological Survey was initiated in 1978 and was completed in 1995. The purpose of this program was to define the regional geohydrology and establish a framework of background information on geology, hydrology, and geochemistry of the Nation's important aquifer systems. This information is critically needed to develop an understanding of the Nation's major ground-water flow systems and to support better management of ground-water resources. Twenty-five of the Nation's major aquifer systems were studied under this program. Starting in 1988, the program devoted part of its resources to compilation of a National Ground Water Atlas that presets a comprehensive summary of the Nation's major ground-water resources. The atlas, which is designed in a graphical format supported by descriptive text, serves as a basic reference for the location, geography, geology, and hydrologic characteristics of the major aquifers in the Nation. This bibliography lists 1,105 reports that result from various studies of the program. The list of reports for each study follows a brief description of that study.

A model explaining and predicting lamb flavour from the aroma-active chemical compounds released upon grilling light lamb loins.

PubMed

Bueno, Mónica; Campo, M Mar; Cacho, Juan; Ferreira, Vicente; Escudero, Ana

2014-12-01

The objective of the work is to understand the role of the different aroma compounds in the perception of the local "lamb flavour" concept. For this, a set of 70 loins (Longissimus dorsi) from approximately seventy day-old Rasa Aragonesa male lambs were grilled and the aroma-active chemicals released during the grilling process were trapped and analyzed. Carbonyl compounds were derivatizated and determined by GC-NCI-MS, whereas other aromatic compounds were directly analyzed by GC-GC-MS. Odour activity values (OAVs) were calculated using their odour threshold values in air. Lamb flavour could be satisfactory explained by a partial least-squares model (74% explained variance in cross-validation) built by the OAVs of 32 aroma-active chemical compounds. The model demonstrates that the lamb flavour concept is the result of a complex balance. Its intensity critically and positively depends to the levels of volatile fatty acids and several dimethylpyrazines while is negatively influenced by the different alkenals and alkadienals. (E,E)-2,4-decadienal and (E)-2-nonenal showed top OAVs. Copyright © 2014 Elsevier Ltd. All rights reserved.

Effects of an enriched housing environment on sensory aspects and fatty-acid composition of the longissimus muscle of light-weight finished lambs.

PubMed

Aguayo-Ulloa, L A; Pascual-Alonso, M; Campo, M M; Olleta, J L; Villarroel, M; Pizarro, D M; Miranda-de la Lama, G C; María, G A

2014-08-01

We analysed the effect of enriched housing on the sensory meat quality and fatty acid composition of longissimus muscle in 60 entire Rasa Aragonesa lambs, housed indoors for 5 weeks in six pens (10 lambs/pen, 0.95 m(2)/lamb, initial weight 17.13±0.18 kg and carcass mean 12.23±0.23 kg); three control pens (barren) and three enriched pens (straw, platform with ramps and a small ramp). The final weight, carcass weight, fatness scores and cooking losses of meat from enriched lambs (EG) were higher and pH 24 was lower (P ≤ 0.05). The EG lambs had more C18:0 and total SFA (P ≤ 0.05). Lamb odour and grass odour were more intense in EG (P ≤ 0.05). Overall liking was higher for EG (P ≤ 0.05) and associated with tenderness (P ≤ 0.0001). The results suggest that environmental enrichment can have effects on fatty acid composition and sensory meat quality. Copyright © 2014 Elsevier Ltd. All rights reserved.

Clinical efficacy of herbal Padmapatradi yoga in bronchial asthma (Tamaka Swasa)

PubMed Central

Panda, Ashok Kumar; Doddanagali, S. R.

2011-01-01

Ayurveda refers to bronchial asthma as Tamaka Swasa and it is well explained in Charaka Samhita. It contributes several modalities of the treatment for Swasa roga(asthma). Among all modalities of treatment, polyherbal combinations are said to be well-accepted, safe and effective in asthma. A study was carried out in 40 patients of either sex in between the age of 15-65 years to assure the clinical response of Padmapatradi yoga in bronchial asthma (Tamaka Swasa) at P.G. department of Kayachikitsa, D.G.M. Ayurvedic Medical College, Gadag, Karnataka. The sum total properties of Padmapatradi yoga is tikta katu rasa, laghu and tikna guna (light and penetrating properties), ushna virya (hot potency) and vatakaphagna (decrease vata and kapha dosa) Padmapatradi yoga is effective in increased peak expiratory flow rate, breath holding time, and reduces the absolute eosinophil count of studied cases and also found statistically highly significant at p<0.001 level. The drug is quite safe and acts as a bronchodilator, antihistaminic and anti-inflammatory. PMID:21760694

Time-Resolved CubeSat Photometry with a Low Cost Electro-Optics System

NASA Astrophysics Data System (ADS)

Gasdia, F.; Barjatya, A.; Bilardi, S.

2016-09-01

Once the orbits of small debris or CubeSats are determined, optical rate-track follow-up observations can provide information for characterization or identification of these objects. Using the Celestron 11" RASA telescope and an inexpensive CMOS machine vision camera, we have obtained time-series photometry from dozens of passes of small satellites and CubeSats over sites in Florida and Massachusetts. The fast readout time of the CMOS detector allows temporally resolved sampling of glints from small wire antennae and structural facets of rapidly tumbling objects. Because the shape of most CubeSats is known, these light curves can be used in a mission support function for small satellite operators to diagnose or verify the proper functioning of an attitude control system or deployed antenna or instrument. We call this telescope system and the accompanying analysis tools OSCOM for Optical tracking and Spectral characterization of CubeSats for Operational Missions. We introduce the capability of OSCOM for space object characterization, and present photometric observations demonstrating the potential of high frame rate small satellite photometry.

Design, revision, and application of ground-water flow models for simulation of selected water-management scenarios in the coastal area of Georgia and adjacent parts of South Carolina and Florida

USGS Publications Warehouse

Clarke, John S.; Krause, Richard E.

2000-01-01

Ground-water flow models of the Floridan aquifer system in the coastal area of Georgia and adjacent parts of South Carolina and Florida, were revised and updated to ensure consistency among the various models used, and to facilitate evaluation of the effects of pumping on the ground-water level near areas of saltwater contamination. The revised models, developed as part of regional and areal assessments of ground-water resources in coastal Georgia, are--the Regional Aquifer-System Analysis (RASA) model, the Glynn County area (Glynn) model, and the Savannah area (Savannah) model. Changes were made to hydraulic-property arrays of the RASA and Glynn models to ensure consistency among all of the models; results of theses changes are evidenced in revised water budgets and calibration statistics. Following revision, the three models were used to simulate 32 scenarios of hypothetical changes in pumpage that ranged from about 82 million gallons per day (Mgal/d) lower to about 438 Mgal/d higher, than the May 1985 pumping rate of 308 Mgal/d. The scenarios were developed by the Georgia Department of Natural Resources, Environmental Protection Division and the Chatham County-Savannah Metropolitan Planning Commission to evaluate water-management alternatives in coastal Georgia. Maps showing simulated ground-water-level decline and diagrams presenting changes in simulated flow rates are presented for each scenario. Scenarios were grouped on the basis of pumping location--entire 24-county area, central subarea, Glynn-Wayne-Camden County subarea, and Savannah-Hilton Head Island subarea. For those scenarios that simulated decreased pumpage, the water level at both Brunswick and Hilton Head Island rose, decreasing the hydraulic gradient and reducing the potential for saltwater contamination. Conversely, in response to scenarios of increased pumpage, the water level at both locations declined, increasing the hydraulic gradient and increasing the potential for saltwater contamination

Hydrogeologic setting, conceptual groundwater flow system, and hydrologic conditions 1995–2010 in Florida and parts of Georgia, Alabama, and South Carolina

USGS Publications Warehouse

Bellino, Jason C.; Kuniansky, Eve L.; O'Reilly, Andrew M.; Dixon, Joann F.

2018-05-04

The hydrogeologic setting and groundwater flow system in Florida and parts of Georgia, Alabama, and South Carolina is dominated by the highly transmissive Floridan aquifer system. This principal aquifer is a vital source of freshwater for public and domestic supply, as well as for industrial and agricultural uses throughout the southeastern United States. Population growth, increased tourism, and increased agricultural production have led to increased demand on groundwater from the Floridan aquifer system, particularly since 1950. The response of the Floridan aquifer system to these stresses often poses regional challenges for water-resource management that commonly transcend political or jurisdictional boundaries. To help water-resource managers address these regional challenges, the U.S. Geological Survey (USGS) Water Availability and Use Science Program began assessing groundwater availability of the Floridan aquifer system in 2009.The current conceptual groundwater flow system was developed for the Floridan aquifer system and adjacent systems partly on the basis of previously published USGS Regional Aquifer-System Analysis (RASA) studies, specifically many of the potentiometric maps and the modeling efforts in these studies. The Floridan aquifer system extent was divided into eight hydrogeologically distinct subregional groundwater basins delineated on the basis of the estimated predevelopment (circa 1880s) potentiometric surface: (1) Panhandle, (2) Dougherty Plain-Apalachicola, (3) Thomasville-Tallahassee, (4) Southeast Georgia-Northeast Florida-South South Carolina, (5) Suwannee, (6) West-central Florida, (7) East-central Florida, and (8) South Florida. The use of these subregions allows for a more detailed analysis of the individual basins and the groundwater flow system as a whole.The hydrologic conditions and associated groundwater budget were updated relative to previous RASA studies to include additional data collected since the 1980s and to reflect the

Geographic, geologic, and hydrologic summaries of intermontane basins of the northern Rocky Mountains, Montana

USGS Publications Warehouse

Kendy, Eloise; Tresch, R.E.

1996-01-01

This report combines a literature review with new information to provide summaries of the geography, geology, and hydrology of each of 32 intermontane basins in western Montana. The summary of each intermontane basin includes concise descriptions of topography, areal extent, altitude, climate, 1990 population, land and water use, geology, surface water, aquifer hydraulic characteristics, ground-water flow, and ground-water quality. If present, geothermal features are described. Average annual and monthly temperature and precipitation are reported from one National Weather Service station in each basin. Streamflow data, including the drainage area, period of record, and average, minimum, and maximum historical streamflow, are reported for all active and discontinued USGS streamflow-gaging stations in each basin. Monitoring-well data, including the well depth, aquifer, period of record, and minimum and maximum historical water levels, are reported for all long-term USGS monitoring wells in each basin. Brief descriptions of geologic, geophysical, and potentiometric- surface maps available for each basin also are included. The summary for each basin also includes a bibliography of hydrogeologic literature. When used alone or in conjunction with regional RASA reports, this report provides a practical starting point for site-specific hydrogeologic investigations.

[Emotional experience of early traumatic experiences and relationship-specific attachment styles in alcohol-dependent patients].

PubMed

Hebein, Ursula; Quantschnig, Bettina; Andreas, Sylke

2018-03-01

Emotional experience of early traumatic experiences and relationship-specific attachment styles in alcohol-dependent patients Objectives: The present investigation studied the differences in emotional experiences among alcohol-dependent patients in inpatient psychotherapy, taking into account their traumatic experiences and relationship-specific attachment styles. Three standardized instruments were used on this clinical sample of 70 patients in inpatient psychotherapy: (1) Scales for Experiencing Emotions (SEE), (2) Childhood Trauma Questionnaire (CTQ), (3) Relationship-Specific Attachment Scales for Adults (RASA). The results showed that traumatic experiences in childhood and adolescence as well as relationship-specific attachment styles were indeed associated with deficits in emotional experience and regulation. Especially emotional abuse was associated with deficits in emotional experience. An insecure attachment style was associated with a lower level of acceptance of emotions, a lower level of self-control, and dysfunctional emotion regulation. In particular, the attachment style to the mother seems to be important. These results suggest that a distinction of alcohol-addicted patients, with respect to attachment styles and traumatic experiences in childhood and adolescent, seems to be important in order to define specific interventions to improve the ability to regulate emotions.

A clinical study to evaluate the efficacy of Trataka Yoga Kriya and eye exercises (non-pharmocological methods) in the management of Timira (Ammetropia and Presbyopia).

PubMed

Gopinathan, G; Dhiman, Kartar Singh; Manjusha, R

2012-10-01

Timira is a disease that can be attributed to wide range of clinical conditions starting from mild blurring of vision and having potential risk of permanent vision loss. According to the involvement of Dhatus (body elements) the condition can be grouped into two stages. The initial stage or Uttana, where the involvement of Dhatus is limited to Rasa, Rakta (blood), and Mamsa Dhatu (muscle tissue). When the Doshas are localized in the first and second Patala refractive error do happen and in presbyopia more emphasis is given to Mamsa Dhatu. In this study only Uttana stage of Timira was considered. The clinical study was done on 66 patients of Timira in two groups of four sub groups each of myopia, hypermetropia, astigmatism, and presbyopia. Group A was subjected to eye exercises (Bates method) and Group B was subjected to Trataka Yoga Kriya. After the enrolment of patients for this study, signs and symptoms were assessed both subjectively and objectively before, during, and after treatment. The study indicates that subjectively there are significant results in both the groups but objectively there is not much improvement.

A clinical study to evaluate the efficacy of Trataka Yoga Kriya and eye exercises (non-pharmocological methods) in the management of Timira (Ammetropia and Presbyopia)

PubMed Central

Gopinathan, G.; Dhiman, Kartar Singh; Manjusha, R.

2012-01-01

Timira is a disease that can be attributed to wide range of clinical conditions starting from mild blurring of vision and having potential risk of permanent vision loss. According to the involvement of Dhatus (body elements) the condition can be grouped into two stages. The initial stage or Uttana, where the involvement of Dhatus is limited to Rasa, Rakta (blood), and Mamsa Dhatu (muscle tissue). When the Doshas are localized in the first and second Patala refractive error do happen and in presbyopia more emphasis is given to Mamsa Dhatu. In this study only Uttana stage of Timira was considered. The clinical study was done on 66 patients of Timira in two groups of four sub groups each of myopia, hypermetropia, astigmatism, and presbyopia. Group A was subjected to eye exercises (Bates method) and Group B was subjected to Trataka Yoga Kriya. After the enrolment of patients for this study, signs and symptoms were assessed both subjectively and objectively before, during, and after treatment. The study indicates that subjectively there are significant results in both the groups but objectively there is not much improvement. PMID:23723673

Numerical Simulation of Regional Changes in Ground-Water Levels and in the Freshwater-Saltwater Interface Induced by Increased Pumpage at Barbers Point Shaft, Oahu, Hawaii

USGS Publications Warehouse

Souza, William R.; Meyer, William

1995-01-01

The effect on the regional ground-water system of southern Oahu from increased pumpage at Barbers Point shaft was estimated by a numerical ground-water model developed for the Oahu Regional Aquifer Systems Analysis (RASA) study. The RASA model was updated by revising pumping and ground-water recharge data. Pumpage data used in the new simulations were based on the allocated pumping rates for 1995 as set by the State Commission on Water Resource Management. On the basis of numerical simulation, Barbers Point shaft can sustain a withdrawal rate of 4.34 million gallons per day without adversely affecting wells in the Waianae aquifer. From results of numerical simulations, it is estimated that, as a result of increasing pumpage in Barbers Point shaft by 2 million gallons per day above the 1995-allocated rate of 2.337 million gallons per day, regional declines in ground-water levels will be about 0.4 to 0.7 feet throughout the Waianae aquifer and about 0.8 ft at the shaft. The corresponding rise of the freshwater-saltwater interface, as a result of declines in ground-water levels, is estimated to be about 20 to 30 feet. Numerical simulation also indicates that changes in ground-water levels greater than about 0.1 feet do not extend across either the Waianae-Koolau unconformity or the south Schofield barrier. The model-estimated position of the freshwater-saltwater interface, as a result of additional pumpage, ranges from 500 to 860 feet below sea level in the southern and northern parts of the aquifer, respectively, and about 540 feet below sea level at the shaft. On the basis of an estimate of the thickness of the transition-zone, the freshwater lens would remain about 240 feet thick below the shaft. In addition, the estimated declines in ground-water levels throughout the aquifer are small compared with the thickness of the freshwater lens and these declines would not be expected to affect the yields of other wells in terms of quantity. Chloride concentrations in the

Early pregnancy diagnosis in sheep using near-infrared spectroscopy on blood plasma.

PubMed

Andueza, Donato; Alabart, José L; Lahoz, Belén; Muñoz, Fernando; Folch, José

2014-02-01

The objective of this study was to evaluate the ability of near-infrared reflectance spectroscopy (NIRS) to discriminate between pregnant and nonpregnant ewes in early stages of pregnancy after artificial insemination (AI) from blood plasma. Samples were collected using jugular puncture at 18 and 25 days after AI from 188 Rasa Aragonesa and Ansotana ewes. Plasma samples were analyzed for pregnancy-associated glycoprotein (PAG) and progesterone (P4) using ELISA commercial kits. The spectra of plasma samples were recorded in the visible and near-infrared ranges. The performance of these tests were compared, using as criterion standard the pregnancy status determined using transabdominal ultrasonography at 45 days after AI. Pregnancy rate was 47.9% (90/188). At Day 18, sensitivity was similar in NIRS and P4 tests (98.9% vs. 100%; not significant) and greater than PAG (32.2%; both P < 0.001). Specificity was similar in NIRS and PAG tests (both 100%) and greater than that of P4 (84.7%; P < 0.001). At Day 25, sensitivity and specificity of NIRS and PAG were both 100%. It can be concluded that NIRS was an accurate method of diagnosis of pregnancy at Days 18 and 25 after AI in ewes. Copyright © 2014 Elsevier Inc. All rights reserved.

Did debris-covered glaciers serve as pleistocene refugia for plants? A new hypothesis derived from observations of recent plant growth on glacier surfaces

USGS Publications Warehouse

Fickert, T.; Friend, D.; Gruninger, F.; Molnia, B.; Richter, M.

2007-01-01

This study proposes a new hypothesis: Debris-covered glaciers served as Pleistocene biological refugia. This is based on detailed studies of vascular plant growth on six debris-mantled glaciers, literally around the world, as well as many casual observations also across the globe. We find that such glaciers are quite common and are distributed globally. Using Carbon Glacier, Mount Rainier, U.S.A., as a type locality and case study, we show aspects of the floristic and structural diversity as well as spatial patterns of plant growth on the glacier surface. Migration strategies, root characteristics, and origin and dispersal strategies for vascular plant species are documented. Also reported are special microclimatic conditions in these areas allowing for this remarkable plant ecology. We find that alpine taxa can grow considerably below their usual altitudinal niche due to the cooler subsurface soil temperatures found on glacial debris with ice underneath, and that may have significantly altered the spatial distribution of such flora during full glacial conditions. This in turn creates previously undocumented areas from which alpine, and perhaps arctic, plant species reestablished in post-glacial time. This hypothesis is complementary to both the nunatak hypothesis and tabula rasa theory and possibly helps solve the ongoing controversy between them. ?? 2007 Regents of the University of Colorado.

[Are there imported components for channels and collaterals?].

PubMed

Zhu, Bing

2005-10-01

The medical papyri in ancient Egypt written before 1500 B. C, recorded the metu system which could not be explained by modern anatomic location and was difficultly expounded by biological functions. Most of diseases were treated by dredging the metu, regulating the metu, balancing the metu, removing noxious substances from the metu, restoring the normal functions of the metu. The ancient Egyptian held that the metu forms mutual connecting channel network to carry out flowing of energy and information, with the functions of linking up external and internal organs, which is similar to linking functions of meridians-zang- and fu- organs. In the works of Hippocrates, the father of ancient Greece medicine, 2nd century B. C, also described the linking channels "phleps" on human surface. And in other country with an ancient civilization, India, had a similar channel system. About 15th century B. C, Charaka Samitha of ancient India described human "nadis" channel system. The system carried "rasas" (life liquid) connected with the whole body from the navel. Therefore, it can be held that at the embryonic stage of medicine development, the linking tube similar to channel or vessel was described, but it is interested that met and Chinese "mai" (vessel) have similar pronunciation. And mai in China was created after met.

Population structure of eleven Spanish ovine breeds and detection of selective sweeps with BayeScan and hapFLK.

PubMed

Manunza, A; Cardoso, T F; Noce, A; Martínez, A; Pons, A; Bermejo, L A; Landi, V; Sànchez, A; Jordana, J; Delgado, J V; Adán, S; Capote, J; Vidal, O; Ugarte, E; Arranz, J J; Calvo, J H; Casellas, J; Amills, M

2016-06-07

The goals of the current work were to analyse the population structure of 11 Spanish ovine breeds and to detect genomic regions that may have been targeted by selection. A total of 141 individuals were genotyped with the Infinium 50 K Ovine SNP BeadChip (Illumina). We combined this dataset with Spanish ovine data previously reported by the International Sheep Genomics Consortium (N = 229). Multidimensional scaling and Admixture analyses revealed that Canaria de Pelo and, to a lesser extent, Roja Mallorquina, Latxa and Churra are clearly differentiated populations, while the remaining seven breeds (Ojalada, Castellana, Gallega, Xisqueta, Ripollesa, Rasa Aragonesa and Segureña) share a similar genetic background. Performance of a genome scan with BayeScan and hapFLK allowed us identifying three genomic regions that are consistently detected with both methods i.e. Oar3 (150-154 Mb), Oar6 (4-49 Mb) and Oar13 (68-74 Mb). Neighbor-joining trees based on polymorphisms mapping to these three selective sweeps did not show a clustering of breeds according to their predominant productive specialization (except the local tree based on Oar13 SNPs). Such cryptic signatures of selection have been also found in the bovine genome, posing a considerable challenge to understand the biological consequences of artificial selection.

MemBrain: An Easy-to-Use Online Webserver for Transmembrane Protein Structure Prediction

NASA Astrophysics Data System (ADS)

Yin, Xi; Yang, Jing; Xiao, Feng; Yang, Yang; Shen, Hong-Bin

2018-03-01

Membrane proteins are an important kind of proteins embedded in the membranes of cells and play crucial roles in living organisms, such as ion channels, transporters, receptors. Because it is difficult to determinate the membrane protein's structure by wet-lab experiments, accurate and fast amino acid sequence-based computational methods are highly desired. In this paper, we report an online prediction tool called MemBrain, whose input is the amino acid sequence. MemBrain consists of specialized modules for predicting transmembrane helices, residue-residue contacts and relative accessible surface area of α-helical membrane proteins. MemBrain achieves a prediction accuracy of 97.9% of A TMH, 87.1% of A P, 3.2 ± 3.0 of N-score, 3.1 ± 2.8 of C-score. MemBrain-Contact obtains 62%/64.1% prediction accuracy on training and independent dataset on top L/5 contact prediction, respectively. And MemBrain-Rasa achieves Pearson correlation coefficient of 0.733 and its mean absolute error of 13.593. These prediction results provide valuable hints for revealing the structure and function of membrane proteins. MemBrain web server is free for academic use and available at www.csbio.sjtu.edu.cn/bioinf/MemBrain/. [Figure not available: see fulltext.

Bibliography of Regional Aquifer-System Analysis Program of the US Geological Survey, 1978-91

USGS Publications Warehouse

Sun, Ren Jen; Weeks, John B.

1991-01-01

The Regional Aquifer-System Analysis (RASA) Program of the U.S. Geological Survey was initiated in 1978. The purpose of this program is to define the regional geohydrology and establish a framework of background information on geology, hydrology, and geochemistry of the Nation's important aquifer systems. This information is critically needed to develop an understanding of the Nation's major ground-water flow systems and to support better management of ground-water resources.As of May 1991, 28 of the Nation's major aquifer systems have been identified for study under this program. Of these, 17 regional aquifer-system studies have been completed, and 8 studies are ongoing. Starting in 1988, the program devoted part of its resources to compilation of a Nationwide ground-water atlas that presents a comprehensive summary of the Nation's major ground-water resources. The atlas, which is designed in a graphical format supported by descriptive text, will serve as a basic reference for the location, geography, geology, and hydrologic characteristics of the major aquifers in the Nation.This bibliography lists the published 876 reports resulting from various studies of the program, from 1978 through May 1991. The list of reports for each study is placed after a brief description of that study.

Assessment of commercial lamb meat quality by British and Spanish taste panels.

PubMed

Sañudo, C; Nute, G R; Campo, M M; María, G; Baker, A; Sierra, I; Enser, M E; Wood, J D

1998-01-01

Trained sensory panels in Britain and Spain assessed loin meat from commercial lambs purchased in Spain, which included Welsh lamb (imported from Britain) and two Spanish breeds (Merino and Rasa Aragonesa). The British panel also assessed British lamb purchased in local butcher shops and supermarkets. Sensory panels, in each country, received meat from the same lambs and used their local methods of cooking and assessment. Spanish panels used unstructured line scales to measure lamb odour intensity, tenderness, juiciness, lamb flavour intensity and two hedonic scales of flavour liking and overall liking. The British panel used 8 point category scales with the same attributes. Results from both panels in objective parameters were in agreement, hence showing that different trained sensory panels may arrive at the same conclusion. However, when panellists were allowed to make hedonic judgements (preference), the British panel preferred British lamb and the Spanish panel preferred Spanish lamb. This finding has important consequences for lamb producers who export their lambs and demonstrates that the underlying reasons for different preferences should be investigated. Production variables are discussed in relation to their influence on lamb eating quality and as a way to tailor lamb eating quality attributes familiar to consumers in the importing country.

Delineation of yet unknown cryptic subtelomere aberrations in 50% of acute myeloid leukemia with normal GTG-banding karyotype.

PubMed

Gross, Madeleine; Mkrtchyan, Hasmik; Glaser, Melanie; Fricke, Hans Jörg; Höffken, Klaus; Heller, Anita; Weise, Anja; Liehr, Thomas

2009-02-01

Acute myeloid leukemia (AML) is a heterogeneous disease with respect to clinical prognosis and acquired chromosomal aberrations. After routine banding cytogenetic analysis 45% of AML patients show a normal karyotype (NK-AML). For a better understanding of development and progression in AML, it is important to find markers which could be primary genetic aberrations. Therefore, in this study 31 patients with NK-AML were analyzed by new high resolution molecular cytogenetic approaches. A combination of multitude multicolor banding and metaphase microdissection-based comparative genomic hybridization revealed deletions of the subtelomeric regions in 6% of the studied cases. According to these results, locus-specific probes for the subtelomeric regions of chromosomes 5, 9, 11, 12 and 13 were applied on 22 of the studied 31 NK-AML cases. Surprisingly, 50% of them showed deletions or duplications. These aberrations occurred in the in vitro proliferating as well as in the non-proliferating cells. Meta-analysis of the aberrant regions revealed that they often include genes known to be associated with tumors, e.g. RASA3 on chromosome 13. These results implicate that aberrations in the subtelomeric regions of NK-AML occur quite often and may be considered as primary genetic changes, and should not be neglected in future diagnostic approaches.

Vascular anomalies of the head and neck: a review of genetics.

PubMed

Yadav, Prashant; De Castro, Dawn K; Waner, Milton; Meyer, Lutz; Fay, Aaron

2013-01-01

Vascular anomalies comprise malformations, hemangiomas, and rare tumors. The commonality among these lesions is their origin in vascular endothelia. Most occur sporadically, but occasional inheritance is observed and thus allows genetic research and insight into etiology. This review highlights those vascular anomalies in which genetic inheritance has been demonstrated. A comprehensive literature search was performed on PubMed. Fifty-five full-length articles were reviewed. Five categories of vascular anomalies with patterned inheritance were identified: arteriovenous malformation (AVM), capillary malformation (CM), lymphatic malformation (LM), venous malformation (VM), and infantile hemangioma (IH). Capillary and arteriovenous malformation subtypes are associated with a RASA-1 gene mutation and show autosomal dominant inheritance. VEGFR3 mutations have been associated with generalized forms of LM and lymphedema. Mutations in TIE2/TEK genes cause inherited forms of venous malformations also with autosomal dominant inheritance. Familial clustering and atopic disease are associated with infantile hemangioma, and gene expression varies with the developmental stage of these lesions. Most vascular anomalies occur sporadically, but several genes and genetic disorders have been associated with them. Specific forms of capillary malformation appear to be most convincingly associated with genomic errors. Further research promises new insights into the development of this diverse group of disorders.

p120Ras-GAP binds the DLC1 Rho-GAP tumor suppressor protein and inhibits its RhoA GTPase and growth-suppressing activities.

PubMed

Yang, X-Y; Guan, M; Vigil, D; Der, C J; Lowy, D R; Popescu, N C

2009-03-19

DLC1 (deleted in liver cancer 1), which encodes a Rho GTPase-activating protein (Rho-GAP), is a potent tumor suppressor gene that is frequently inactivated in several human cancers. DLC1 is a multidomain protein that has been shown previously to bind members of the tensin gene family. Here we show that p120Ras-GAP (Ras-GAP; also known as RASA1) interacts and extensively colocalizes with DLC1 in focal adhesions. The binding was mapped to the SH3 domain located in the N terminus of Ras-GAP and to the Rho-GAP catalytic domain located in the C terminus of the DLC1. In vitro analyses with purified proteins determined that the isolated Ras-GAP SH3 domain inhibits DLC1 Rho-GAP activity, suggesting that Ras-GAP is a negative regulator of DLC1 Rho-GAP activity. Consistent with this possibility, we found that ectopic overexpression of Ras-GAP in a Ras-GAP-insensitive tumor line impaired the growth-suppressing activity of DLC1 and increased RhoA activity in vivo. Our observations expand the complexity of proteins that regulate DLC1 function and define a novel mechanism of the cross talk between Ras and Rho GTPases.1R01CA129610

“Standardization through Mechanization”

PubMed Central

KIRK, ROBERT G. W.

2012-01-01

“In all his work,” Science News-Letter reported on 17 August 1940, “Reyniers follows a slogan of his own, follows it so zealously as to make it almost a fetish: standardization through mechanization.”1 Utilizing new technologies that he designed and built, James Reyniers came to “wide notice in the world of science” due to his innovative approach to standardizing organisms for use as experimental tools. “Ordinarily, when a scientist wants to study an unknown germ (or drug, or nutrient) he tries it out on an experimental animal,” Life magazine explained in September 1949 when reporting Reyniers’s innovative technologies. “But since all laboratory animals are invariably contaminated by a host of unknown germs, he can never be absolutely sure that results he sees are really caused by the agent he is testing. This problem … can be solved only by using animals whose bodies contain no germs at all. Now, for the first time, such animals are available.”2 Reyniers had extended the bacteriological ideal of pure culture to encompass the whole organism, creating “bacteriologically blank” organisms, or “biological tabula rasa,” which he believed formed ideal tools for experimental science. PMID:22530388

Assessment of In Vivo Antidiabetic Properties of Umbelliferone and Lupeol Constituents of Banana (Musa sp. var. Nanjangud Rasa Bale) Flower in Hyperglycaemic Rodent Model.

PubMed

Ramu, Ramith; S Shirahatti, Prithvi; S, Nanjunda Swamy; Zameer, Farhan; Lakkappa Dhananjaya, Bhadrapura; M N, Nagendra Prasad

2016-01-01

Banana is an extensively cultivated plant worldwide, mainly for its fruit, while its ancillary product, the banana flower is consumed as a vegetable and is highly recommended for diabetics in the traditional Indian medicine system. This study is based on an investigation of the in vivo antihyperglycaemic activity of Umbelliferone (C1) and Lupeol (C2) isolated from the ethanol extract of banana flower (EF) in alloxan induced diabetic rat model. Diabetic rats which were administered with C1, C2 and EF (100 and 200 mg/kg b. wt.) for 4 weeks showed deterioration in fasting hyperglycaemia and reversal of abnormalities in serum/urine protein, urea and creatinine, when compared to the diabetic control group of rats. The diabetic group of rats fed with EF, C1 and C2 (100 mg/kg b. wt.) once daily, for a period of 28 days resulted in a significant reduction of diabetic symptoms viz., polyphagia, polydipsia, polyuria and urine sugar together with an improved body weight. HbA1c extent was reduced whereas levels of insulin and Hb were increased. Both the extract and compounds wielded positive impacts in diabetic rats by reversal of altered activities of hepatic marker enzymes viz., aspartate transaminase (AST), alanine transaminase (ALT), alkaline phosphatase (ALP); glycolytic enzyme (hexokinase); shunt enzyme (glucose-6-phosphate dehydrogenase); gluconeogenic enzymes (glucose-6-phosphatase, fructose-1,6-bisphosphatase, lactate dehydrogenase) and pyruvate kinase. The characteristic diabetic complications such as hypercholesterolemia and hypertriacylglycerolemia also significantly reverted to normal in the serum/liver of diabetic rats. Besides these, the treatment increased the activities of enzymatic and non-enzymatic antioxidants in the serum and liver. The histological observations revealed a marked regeneration of the β-cells in the drug treated diabetic rats. In conclusion, the present study illustrates that EF, C1 and C2 enhances the glycolytic activities, besides increasing the hepatic glucose utilization in diabetic rats by stimulating insulin secretion from the remnant β-cells along with potential enzymatic and non-enzymatic antioxidant activities.

Assessment of In Vivo Antidiabetic Properties of Umbelliferone and Lupeol Constituents of Banana (Musa sp. var. Nanjangud Rasa Bale) Flower in Hyperglycaemic Rodent Model

PubMed Central

Ramu, Ramith; S. Shirahatti, Prithvi; S., Nanjunda Swamy; Zameer, Farhan; Lakkappa Dhananjaya, Bhadrapura; M. N., Nagendra Prasad

2016-01-01

Banana is an extensively cultivated plant worldwide, mainly for its fruit, while its ancillary product, the banana flower is consumed as a vegetable and is highly recommended for diabetics in the traditional Indian medicine system. This study is based on an investigation of the in vivo antihyperglycaemic activity of Umbelliferone (C1) and Lupeol (C2) isolated from the ethanol extract of banana flower (EF) in alloxan induced diabetic rat model. Diabetic rats which were administered with C1, C2 and EF (100 and 200 mg/kg b. wt.) for 4 weeks showed deterioration in fasting hyperglycaemia and reversal of abnormalities in serum/urine protein, urea and creatinine, when compared to the diabetic control group of rats. The diabetic group of rats fed with EF, C1 and C2 (100 mg/kg b. wt.) once daily, for a period of 28 days resulted in a significant reduction of diabetic symptoms viz., polyphagia, polydipsia, polyuria and urine sugar together with an improved body weight. HbA1c extent was reduced whereas levels of insulin and Hb were increased. Both the extract and compounds wielded positive impacts in diabetic rats by reversal of altered activities of hepatic marker enzymes viz., aspartate transaminase (AST), alanine transaminase (ALT), alkaline phosphatase (ALP); glycolytic enzyme (hexokinase); shunt enzyme (glucose-6-phosphate dehydrogenase); gluconeogenic enzymes (glucose-6-phosphatase, fructose-1,6-bisphosphatase, lactate dehydrogenase) and pyruvate kinase. The characteristic diabetic complications such as hypercholesterolemia and hypertriacylglycerolemia also significantly reverted to normal in the serum/liver of diabetic rats. Besides these, the treatment increased the activities of enzymatic and non-enzymatic antioxidants in the serum and liver. The histological observations revealed a marked regeneration of the β-cells in the drug treated diabetic rats. In conclusion, the present study illustrates that EF, C1 and C2 enhances the glycolytic activities, besides increasing the hepatic glucose utilization in diabetic rats by stimulating insulin secretion from the remnant β-cells along with potential enzymatic and non-enzymatic antioxidant activities. PMID:27003006

Intuitive control of mobile robots: an architecture for autonomous adaptive dynamic behaviour integration.

PubMed

Melidis, Christos; Iizuka, Hiroyuki; Marocco, Davide

2018-05-01

In this paper, we present a novel approach to human-robot control. Taking inspiration from behaviour-based robotics and self-organisation principles, we present an interfacing mechanism, with the ability to adapt both towards the user and the robotic morphology. The aim is for a transparent mechanism connecting user and robot, allowing for a seamless integration of control signals and robot behaviours. Instead of the user adapting to the interface and control paradigm, the proposed architecture allows the user to shape the control motifs in their way of preference, moving away from the case where the user has to read and understand an operation manual, or it has to learn to operate a specific device. Starting from a tabula rasa basis, the architecture is able to identify control patterns (behaviours) for the given robotic morphology and successfully merge them with control signals from the user, regardless of the input device used. The structural components of the interface are presented and assessed both individually and as a whole. Inherent properties of the architecture are presented and explained. At the same time, emergent properties are presented and investigated. As a whole, this paradigm of control is found to highlight the potential for a change in the paradigm of robotic control, and a new level in the taxonomy of human in the loop systems.

A geochronological approach for cave evolution in the Cantabrian Coast (Pindal Cave, NW Spain)

USGS Publications Warehouse

Jimenez-Sanchez, M.; Bischoff, J.L.; Stoll, H.; Aranburu, A.

2006-01-01

Some of the oldest speleothems in the North Cantabrian Coast (Spain) are reported for the first time in this work. Pindal Cave is developed at 24 m above sea level, in a karstic massif reaching its highest surface in a marine terrace (rasa) located at 50-64 m above the present sea level. Several phases of evolution were previously recognized into the cave, including block collapse of the roof, episodic flooding and detrital sedimentation, and chemical precipitation of at least four speleothem generations over both alluvial and collapse deposits. Three of these speleothem generations have been dated by U/Th. The first generation yielded ages from 124,2 ?? 1, 5 ka BP to 73,1 ?? 0,9 ka BP, giving a minimum age for the main detritic sediments in the cave. The second one is not dated. The third generation gives an age of 3,71 ?? 0,4 ka BP (mathematically corrected to 2.7 ?? 0.5 ka BP), while for the youngest generation, with actively growing stalagmites in the cave, basal ages of 200 years BP are estimated by counting annual laminae. The data suggest a tentative maximum elevation rate close to 0, 2 mm/yr for the Cantabrian Margin in this area, although further chronological studies will be needed to check this hypothesis. ?? 2006 Gebru??der Borntraeger.

Emotions: An Indian perspective

PubMed Central

Ramaprasad, Dharitri

2013-01-01

The present paper is an attempt to understand emotions and the affect from Indian traditional point of view. In the Indian philosophical texts’ detailed descriptions of emotions are not available nor are dealt with as a separate concept. This view of emotions lays emphasis on desires as the root cause of emotional upheavals. They are seen as modification of desire and attachment. The desires are seen as arising from the contact and attachment of the ego or ahamkara with the external world and are caused by a sense of imperfection, incompleteness or non-fulfillment. Ego or ahamkara is differentiated from the true Self or atman. Emotions are viewed as springs of action and are bipolar in nature. According to Patanjali's Yoga Shastra, suffering is due to ignorance about one's true “self” (avidya). Hence, suffering or dukha arises from within and not from the outside world. Bhagvadgita traces all emotional experiences to the gunas, i.e., sattva, rajas, and tamas. Works of Bharathmuni have contributed to the understanding of emotional experiences. Concept of rasa or aesthetic relish is central to this approach to understanding affective experiences as dealt with in the Natyashastra of Bharathamuni. These views underline the recommended path for self-transformation. Regulating emotions, both emotional experience and emotional expression, is an integral part of the recommended “principles of living.” PMID:23858247

Population structure of eleven Spanish ovine breeds and detection of selective sweeps with BayeScan and hapFLK

PubMed Central

Manunza, A.; Cardoso, T. F.; Noce, A.; Martínez, A.; Pons, A.; Bermejo, L. A.; Landi, V.; Sànchez, A.; Jordana, J.; Delgado, J. V.; Adán, S.; Capote, J.; Vidal, O.; Ugarte, E.; Arranz, J. J.; Calvo, J. H.; Casellas, J.; Amills, M.

2016-01-01

The goals of the current work were to analyse the population structure of 11 Spanish ovine breeds and to detect genomic regions that may have been targeted by selection. A total of 141 individuals were genotyped with the Infinium 50 K Ovine SNP BeadChip (Illumina). We combined this dataset with Spanish ovine data previously reported by the International Sheep Genomics Consortium (N = 229). Multidimensional scaling and Admixture analyses revealed that Canaria de Pelo and, to a lesser extent, Roja Mallorquina, Latxa and Churra are clearly differentiated populations, while the remaining seven breeds (Ojalada, Castellana, Gallega, Xisqueta, Ripollesa, Rasa Aragonesa and Segureña) share a similar genetic background. Performance of a genome scan with BayeScan and hapFLK allowed us identifying three genomic regions that are consistently detected with both methods i.e. Oar3 (150–154 Mb), Oar6 (4–49 Mb) and Oar13 (68–74 Mb). Neighbor-joining trees based on polymorphisms mapping to these three selective sweeps did not show a clustering of breeds according to their predominant productive specialization (except the local tree based on Oar13 SNPs). Such cryptic signatures of selection have been also found in the bovine genome, posing a considerable challenge to understand the biological consequences of artificial selection. PMID:27272025

Conceptual model of the Great Basin carbonate and alluvial aquifer system

USGS Publications Warehouse

Heilweil, Victor M.; Brooks, Lynette E.

2011-01-01

A conceptual model of the Great Basin carbonate and alluvial aquifer system (GBCAAS) was developed by the U.S. Geological Survey (USGS) for a regional assessment of groundwater availability as part of a national water census. The study area is an expansion of a previous USGS Regional Aquifer Systems Analysis (RASA) study conducted during the 1980s and 1990s of the carbonate-rock province of the Great Basin. The geographic extent of the study area is 110,000 mi2, predominantly in eastern Nevada and western Utah, and includes 165 hydrographic areas (HAs) and 17 regional groundwater flow systems.A three-dimensional hydrogeologic framework was constructed that defines the physical geometry and rock types through which groundwater moves. The diverse sedimentary units of the GBCAAS study area are grouped into hydrogeologic units (HGUs) that are inferred to have reasonably distinct hydrologic properties due to their physical characteristics. These HGUs are commonly disrupted by large-magnitude offset thrust, strike-slip, and normal faults, and locally affected by caldera formation. The most permeable aquifer materials within the study area include Cenozoic unconsolidated sediments and volcanic rocks, along with Mesozoic and Paleozoic carbonate rocks. The framework was built by extracting and combining information from digital elevation models, geologic maps, cross sections, drill hole logs, existing hydrogeologic frameworks, and geophysical data.

Effects of road type during transport on lamb welfare and meat quality in dry hot climates.

PubMed

Miranda-de la Lama, Genaro C; Monge, Paula; Villarroel, Morris; Olleta, Jose Luis; García-Belenguer, Sylvia; María, Gustavo A

2011-06-01

This study determined whether transporting lambs on paved (PR) or unpaved roads (UR) for 3 h had an effect on plasma stress indicators (cortisol, lactate, glucose, creatine kinase [CK], red blood cells, white blood cells, hematocrit, and neutrophil/lymphocyte [N/L] ratio) and instrumental meat quality (pH24, bruising score, water holding capacity [WHC], color, and texture). A total of 48 Rasa Aragonesa male lambs were used that were approximately 100 days old (12.5 kg ± 1.64, carcass weight). The results suggest that transport on unpaved roads had a significant influence on physiological and hematological stress parameters. Road type had a significant effect on all variables, except for white and red blood cells, and hematocrit levels. The UR lambs had significantly higher (at least p ≤ 0.01) cortisol, lactate, glucose, and CK levels and a higher N/L ratio than PR lambs. Meat from UR lambs had some dark-cutting characteristics, with a darker color, higher ultimate pH, and higher tenderness values than PR. In conclusion, lambs transported on unpaved roads had a more intense stress response and poorer meat quality than lambs transported on paved roads. An effort to improve the logistics associated with route planning is necessary to prevent welfare problems during transport to slaughter.

An evolutionary attractor model for sapwood cross section in relation to leaf area.

PubMed

Westoby, Mark; Cornwell, William K; Falster, Daniel S

2012-06-21

Sapwood cross-sectional area per unit leaf area (SA:LA) is an influential trait that plants coordinate with physical environment and with other traits. We develop theory for SA:LA and also for root surface area per leaf area (RA:LA) on the premise that plants maximizing the surplus of revenue over costs should have competitive advantage. SA:LA is predicted to increase in water-relations environments that reduce photosynthetic revenue, including low soil water potential, high water vapor pressure deficit (VPD), and low atmospheric CO(2). Because sapwood has costs, SA:LA adjustment does not completely offset difficult water relations. Where sapwood costs are large, as in tall plants, optimal SA:LA may actually decline with (say) high VPD. Large soil-to-root resistance caps the benefits that can be obtained from increasing SA:LA. Where a plant can adjust water-absorbing surface area of root per leaf area (RA:LA) as well as SA:LA, optimal RA:SA is not affected by VPD, CO(2) or plant height. If selection favours increased height more so than increased revenue-minus-cost, then height is predicted to rise substantially under improved water-relations environments such as high-CO(2) atmospheres. Evolutionary-attractor theory for SA:LA and RA:LA complements models that take whole-plant conductivity per leaf area as a parameter. Copyright © 2012 Elsevier Ltd. All rights reserved.

Plan of study for the regional aquifer-system analysis of the Snake River plain, Idaho and eastern Oregon

USGS Publications Warehouse

Lindholm, Gerald F.

1981-01-01

The 15,600-square-mile Snake River Plain is largely in southern Idaho and includes one of the Nation 's major regional aquifers. A comprehensive investigation of the area 's ground-water resources will be made as part of the U.S. Geological Survey 's Regional Aquifer-System Analysis (RASA) program. Basaltic and sedimentary rocks in the Snake River Plain yield large quantities of water that are vital to the area 's agricultural economy. Basaltic rocks predominate in the eastern Snake River Plain and have especially high water-yielding capabilities. Surface water, largely from the Snake River, is extensively used for irrigation and is a major source of recharge to the ground-water system. Springs issuing from basaltic rocks that form the Snake River Canyon wall near Twin Falls are the major points of ground-water discharge. Increased use of ground water for irrigation is causing concern as to the effect of large-scale withdrawals on spring flow. Ground-water flow models will be used to improve understanding of the hydrologic system, and, if feasible, to aid in evaluating management alternatives. Ground-water quality will be defined and geochemical techniques used to determine the effects of water-rock reactions on water quality. Several reports are planned on different phases of the project, concluding with a summary report. (USGS)

Digital surfaces and hydrogeologic data for the Floridan aquifer system in Florida and in parts of Georgia, Alabama, and South Carolina

USGS Publications Warehouse

Bellino, Jason C.

2011-01-01

A digital dataset for the Floridan aquifer system in Florida and in parts of Georgia, Alabama, and South Carolina was developed from selected reports published as part of the Regional Aquifer-System Analysis (RASA) Program of the U.S. Geological Survey (USGS) in the 1980s. These reports contain maps and data depicting the extent and elevation of both time-stratigraphic and hydrogeologic units of which the aquifer system is composed, as well as data on hydrology, meteorology, and aquifer properties. The three primary reports used for this dataset compilation were USGS Professional Paper 1403-B (Miller, 1986), Professional Paper 1403-C (Bush and Johnston, 1988), and USGS Open-File Report 88-86 (Miller, 1988). Paper maps from Professional Papers 1403-B and 1403-C were scanned and georeferenced to the North American Datum of 1927 (NAD27) using the Lambert Conformal Conic projection (standard parallels 33 and 45 degrees, central longitude -96 degrees, central latitude 39 degrees). Once georeferenced, tracing of pertinent line features contained in each image (for example, contours and faults) was facilitated by specialized software using algorithms that automated much of the process. Resulting digital line features were then processed using standard geographic information system (GIS) software to remove artifacts from the digitization process and to verify and update attribute tables. The digitization process for polygonal features (for example, outcrop areas and unit extents) was completed by hand using GIS software.

Dietary vitamin E dosage and source affects meat quality parameters in light weight lambs.

PubMed

Leal, Leonel N; Beltrán, José A; Alonso, Verónica; Bello, José M; den Hartog, Leo A; Hendriks, Wouter H; Martín-Tereso, Javier

2018-03-01

Supra-nutritional vitamin E supplementation is a commonly used approach to delay lipid oxidation and colour deterioration in lamb and beef meat marketed under modified atmosphere packaging. However, these applications lack a precise calibration of dose for the desired effect and, in addition, limited information is available regarding the use of natural vitamin E for this purpose. Three hundred and sixty Rasa Aragonesa lambs were fed diets supplemented with all-rac-α-tocopheryl acetate (250, 500, 1000 and 2000 mg kg -1 compound feed), RRR-α-tocopheryl acetate (125, 250, 500 and 1000 mg kg -1 compound feed) and a basal diet without vitamin E supplementation for 14 days before slaughter at 25.8 ± 1.67 kg body weight. Vitamin E supplementation had no effect (P > 0.05) on average daily weight gain, feed intake and feed efficiency. Display time had larger effects on lipid oxidation, colour stability, myoglobin forms and meat discolouration parameters compared to vitamin E supplementation. However, vitamin E source and dosage significantly extended meat shelf-life as indicated by lipid oxidation, redness, hue angle, metmyoglobin formation, deoxymyoglobin formation, A 580-630 and I SO2 . The quantification of these effects demonstrated that the biological activity value of 1.36 used to distinguish both vitamin E sources is not appropriate for meat quality enhancing properties. © 2017 Society of Chemical Industry. © 2017 Society of Chemical Industry.

Temperature and rainfall are related to fertility rate after spring artificial insemination in small ruminants

NASA Astrophysics Data System (ADS)

Abecia, J. A.; Arrébola, F.; Macías, A.; Laviña, A.; González-Casquet, O.; Benítez, F.; Palacios, C.

2016-10-01

A total number of 1092 artificial inseminations (AIs) performed from March to May were documented over four consecutive years on 10 Payoya goat farms (36° N) and 19,392 AIs on 102 Rasa Aragonesa sheep farms (41° N) over 10 years. Mean, maximum, and minimum ambient temperatures, mean relative humidity, mean solar radiation, and total rainfall on each insemination day were recorded. Overall, fertility rates were 58 % in goats and 45 % in sheep. The fertility rates of the highest and lowest deciles of each of the meteorological variables indicated that temperature and rainfall had a significant effect on fertility in goats. Specifically, inseminations that were performed when mean (68 %), maximum (68 %), and minimum (66 %) temperatures were in the highest decile, and rainfall was in the lowest decile (59 %), had a significantly ( P < 0.0001) higher proportion of does that became pregnant than did the ewes in the lowest decile (56, 54, 58, and 49 %, respectively). In sheep, the fertility rates of the highest decile of mean (62 %), maximum (62 %), and minimum (52 %) temperature, RH (52 %), THI (53 %), and rainfall (45 %) were significantly higher ( P < 0.0001) than were the fertility rates among ewes in the lowest decile (46, 45, 45, 45, 46, and 43 %, respectively). In conclusion, weather was related to fertility in small ruminants after AI in spring. It remains to be determined whether scheduling the dates of insemination based on forecasted temperatures can improve the success of AI in goats and sheep.

Consolidation and reconsolidation: Two lives of memories?

PubMed Central

McKenzie, Sam; Eichenbaum, Howard

2011-01-01

Most studies on memory consolidation consider the new information as if it were imposed on a tabula rasa, but considerable evidence indicates that new memories must be interleaved within a large network of relevant pre-existing knowledge. Early studies on reconsolidation highlighted that a newly consolidated memory could be erased after reactivation, but new evidence has shown that an effective reactivation experience must also involve memory re-organization to incorporate new learning. The combination of these observations on consolidation and reconsolidation highlight the fundamental similarities of both phenomena as integration of new information on old, and suggest that reconsolidation = consolidation as a never-ending process of schema modification. Memories evolve over time, and many have come to consider that memories have two extended “lives” following the initial encoding of new information. The first, called consolidation, involves a prolonged period after learning when new information becomes fixed at a cellular level and interleaved among already existing memories to enrich our body of personal and factual knowledge. The second, called reconsolidation, turns the tables on a memory and involves the converse process in which a newly consolidated memory is now subject to modification though subsequent reminders and interference. Here we propose that the time has come to join the literatures on these two lives of memories, towards the goal of understanding memory as an ever-evolving organization of the record of experience. PMID:21791282

P-glycoprotein (ABCB1) inhibited network of mitochondrion transport along microtubule and BMP signal-induced cell shape in chimpanzee left cerebrum by systems-theoretical analysis.

PubMed

Lin, Hong; Wang, Lin; Jiang, Minghu; Huang, Juxiang; Qi, Lianxiu

2012-10-01

We constructed the significant low-expression P-glycoprotein (ABCB1) inhibited transport and signal network in chimpanzee compared with high-expression (fold change ≥2) the human left cerebrum in GEO data set, by using integration of gene regulatory activated and inhibited network inference method with gene ontology (GO) analysis. Our result showed that ABCB1 transport and signal upstream network RAB2A inhibited ABCB1, and downstream ABCB1-inhibited SMAD1_2, NCK2, SLC25A46, GDF10, RASGRP1, EGFR, LRPPRC, RASSF2, RASA4, CA2, CBLB, UBR5, SLC25A16, ITGB3BP, DDIT4, PDPN, RAB2A in chimpanzee left cerebrum. We obtained that the different biological processes of ABCB1 inhibited transport and signal network repressed carbon dioxide transport, ER to Golgi vesicle-mediated transport, folic acid transport, mitochondrion transport along microtubule, water transport, BMP signaling pathway, Ras protein signal transduction, transforming growth factor beta receptor signaling pathway in chimpanzee compared with the inhibited network of the human left cerebrum, as a result of inducing inhibition of mitochondrion transport along microtubule and BMP signal-induced cell shape in chimpanzee left cerebrum. Our hypothesis was verified by the same and different biological processes of ABCB1 inhibited transport and signal network of chimpanzee compared with the corresponding activated network of chimpanzee and the human left cerebrum, respectively. Copyright © 2012 John Wiley & Sons, Ltd.

Potential effects of groundwater pumping on water levels, phreatophytes, and spring discharges in Spring and Snake Valleys, White Pine County, Nevada, and adjacent areas in Nevada and Utah

USGS Publications Warehouse

Halford, Keith J.; Plume, Russell W.

2011-01-01

Assessing hydrologic effects of developing groundwater supplies in Snake Valley required numerical, groundwater-flow models to estimate the timing and magnitude of capture from streams, springs, wetlands, and phreatophytes. Estimating general water-table decline also required groundwater simulation. The hydraulic conductivity of basin fill and transmissivity of basement-rock distributions in Spring and Snake Valleys were refined by calibrating a steady state, three-dimensional, MODFLOW model of the carbonate-rock province to predevelopment conditions. Hydraulic properties and boundary conditions were defined primarily from the Regional Aquifer-System Analysis (RASA) model except in Spring and Snake Valleys. This locally refined model was referred to as the Great Basin National Park calibration (GBNP-C) model. Groundwater discharges from phreatophyte areas and springs in Spring and Snake Valleys were simulated as specified discharges in the GBNP-C model. These discharges equaled mapped rates and measured discharges, respectively. Recharge, hydraulic conductivity, and transmissivity were distributed throughout Spring and Snake Valleys with pilot points and interpolated to model cells with kriging in geologically similar areas. Transmissivity of the basement rocks was estimated because thickness is correlated poorly with transmissivity. Transmissivity estimates were constrained by aquifer-test results in basin-fill and carbonate-rock aquifers. Recharge, hydraulic conductivity, and transmissivity distributions of the GBNP-C model were estimated by minimizing a weighted composite, sum-of-squares objective function that included measurement and Tikhonov regularization observations. Tikhonov regularization observations were equations that defined preferred relations between the pilot points. Measured water levels, water levels that were simulated with RASA, depth-to-water beneath distributed groundwater and spring discharges, land-surface altitudes, spring discharge at

Hydrogeology of the Point Lookout Sandstone in the San Juan structural basin, New Mexico, Colorado, Arizona and Utah

USGS Publications Warehouse

Craigg, Steven D.; Dam, W.L.; Kernodle, J.M.; Thorn, C.R.; Levings, G.W.

1990-01-01

This report is one in a series resulting from the U.S. Geological Survey's Regional Aquifer-System Analysis (RASA) study of the San Juan structural basin that began in October 1984. Previous reports in the series describe the hydrogeology of the Dakota Sandstone (Craigg and others, 1989), Morrison Formation (Dam and others, 1990), Gallup Sandstone (Kernodle and others, 1989), Menefee Formation (Levings and others, 1990), and Cliff House Sandstone (Thorn and others, 1990), in the San Juan structural basin. The purposes of the RASA (Welder, 1986) are to: (1) Define and evaluate the aquifer system; (2) assess the effects of past, present, and potential ground-water use on aquifers and streams; and (3) determine the availability and quality of ground water. This report summarizes information on the geology and the occurrence and quality of water in the Point Lookout Sandstone, one of the primary water-bearing units in the regional aquifer system. Data used in this report were collected during the study or were derived from existing records in the U.S. Geological Survey's computerized National Water Information System (NWIS) data base, the Petroleum Information Corporation's database, and the Dwight's ENERGYDATA Inc. BRIN data base. Although all data available for the Point Lookout Sandstone were considered in formulating the discussions in the text, not all those data could be plotted on the illustrations. The San Juan structural basin is in New Mexico, Colorado, Arizona, and Utah and has an area of about 21,600 square miles (fig. 1). The structural basin is about 140 miles wide and about 200 miles long. The study area is that part of the structural basin that contains rocks of Triassic or younger age and, therefore, is less areally extensive than the structural basin. Triassic through Tertiary sedimentary rocks are emphasized in this study because the major aquifers in the basin are present in these rocks. The study area is about 140 miles wide (about the same as the

Hydrogeology of the Pictured Cliffs Sandstone in the San Juan structural basin, New Mexico, Colorado, Arizona, and Utah

USGS Publications Warehouse

Dam, William L.; Kernodle, J.M.; Thorn, C.R.; Levings, G.W.; Craigg, S.D.

1990-01-01

This report is one in a series resulting from the U.S. Geological Survey's Regional Aquifer System Analysis (RASA) study of the San Juan structural basin that began in October 1984. The purposes of the study (Welder, 1986) are to: (1) Define and evaluate the aquifer system; (2) assess the effects of past, present, and potential ground-water use on aquifers and streams, and (3) determine the availability and quality of ground water. Previous reports in this series describe the hydrogeology of the Dakota Sandstone (Craigg and others, 1989), Gallup Sandstone (Kernodle and others, 1989), Morrison Formation (Dam and others, 1990), Point Lookout Sandstone (Craigg and others, 1990), Kirtland Shale and Fruitland Formation (Kernodle and others, 1990), Menefee Formation (Levings and others, 1990), Cliff House Sandstone (Thorn and others, 1990), and Ojo Alamo Sandstone (Thorn and others, 1990) in the San Juan structural basin. This report summarizes information on the geology and the occurrence and quality of water in the Pictured Cliffs Sandstone, one of the primary water-bearing units in the regional aquifer system. Data used in this report were collected during the RASA study or derived from existing records in the U.S. Geological Survey's computerized National Water Information System (NWIS) data base, the Petroleum Information Corporation's data base, and the Dwight's ENERGYDATA Inc. BRIN database. Although all data available for the Pictured Cliffs Sandstone were considered in formulating the discussions in the text, not all those data could be plotted on the illustrations. The San Juan structural basin in New Mexico, Colorado, Arizona, and Utah has an area of about 21,600 square miles (fig. 1). The structural basin is about 140 miles wide and about 200 miles long. The study area is that part of the structural basin that contains rocks of Triassic and younger age; therefore, the study area is less extensive than the structural basin. Triassic through Tertiary

Hydrogeology of the Cliff House Sandstone in the San Juan structural basin, New Mexico, Colorado, Arizona and Utah

USGS Publications Warehouse

Thorn, Conde R.; Levings, G.W.; Craigg, S.D.; Dam, W.L.; Kernodle, J.M.

1990-01-01

This report is one in a series resulting from the U.S. Geological Survey's Regional Aquifer-System Analysis (RASA) study of the San Juan structural basin that began in October 1984. Previous reports in the series describe the hydrogeology of the Dakota Sandstone (Craigg and others, 1989), Point Lookout Sandstone (Craigg and others, 1990), Morrison Formation (Dam and others, 1990), Gallup Sandstone (Kernodle and others, 1989), and Menefee Formation (Levings and others, 1990) in the San Juan structural basin. The purposes of the RASA (Welder, 1986) are to: (1) Define and evaluate the aquifer system; (2) assess the effects of past, present, and potential ground-water use on aquifers and streams; and (3) determine the availability and quality of ground water. This report summarizes information on the geology and the occurrence and quality of water in the Cliff House Sandstone, one of the primary water-bearing units in the regional aquifer system. Data used in this report were collected during the study or were derived from existing records in the U.S. Geological Survey's computerized National Water Information System (NWIS) data base, the Petroleum Information Corporation's data base, and the Dwight's ENERGYDATA Inc. BRIN data base. Although all data available for the Cliff House Sandstone were considered in formulating the discussions in the text, not all those data could be plotted on the illustrations. The San Juan structural basin is in New Mexico, Colorado, Arizona, and Utah and has an area of about 21,600 square miles (fig. 1). The structural basin is about 140 miles wide and about 200 miles long. The study area is that part of the structural basin that contains rocks of Triassic or younger age and, therefore, is less extensive than the structural basin. Triassic through Tertiary sedimentary rocks are emphasized in this study because the major aquifers in the basin are present in these rocks. The study area is about 140 miles wide (about the same as the

Temperature and rainfall are related to fertility rate after spring artificial insemination in small ruminants.

PubMed

Abecia, J A; Arrébola, F; Macías, A; Laviña, A; González-Casquet, O; Benítez, F; Palacios, C

2016-10-01

A total number of 1092 artificial inseminations (AIs) performed from March to May were documented over four consecutive years on 10 Payoya goat farms (36° N) and 19,392 AIs on 102 Rasa Aragonesa sheep farms (41° N) over 10 years. Mean, maximum, and minimum ambient temperatures, mean relative humidity, mean solar radiation, and total rainfall on each insemination day were recorded. Overall, fertility rates were 58 % in goats and 45 % in sheep. The fertility rates of the highest and lowest deciles of each of the meteorological variables indicated that temperature and rainfall had a significant effect on fertility in goats. Specifically, inseminations that were performed when mean (68 %), maximum (68 %), and minimum (66 %) temperatures were in the highest decile, and rainfall was in the lowest decile (59 %), had a significantly (P < 0.0001) higher proportion of does that became pregnant than did the ewes in the lowest decile (56, 54, 58, and 49 %, respectively). In sheep, the fertility rates of the highest decile of mean (62 %), maximum (62 %), and minimum (52 %) temperature, RH (52 %), THI (53 %), and rainfall (45 %) were significantly higher (P < 0.0001) than were the fertility rates among ewes in the lowest decile (46, 45, 45, 45, 46, and 43 %, respectively). In conclusion, weather was related to fertility in small ruminants after AI in spring. It remains to be determined whether scheduling the dates of insemination based on forecasted temperatures can improve the success of AI in goats and sheep.

Roles of back diffusion and biodegradation reactions in sustaining MTBE/TBA plumes in alluvial media

NASA Astrophysics Data System (ADS)

Mackay, D. M.; Rasa, E.

2011-12-01

A plume of methyl tert-butyl ether (MTBE) and tert-butyl alcohol (TBA) originating from a gasoline spill in late 1994 at Vandenberg Air Force Base (VAFB) persisted above regulatory concentration goals for over 15 years within 200 feet of the original spill source. The plume persisted until 2010 despite excavation of the tanks and piping within months after the spill and excavations of additional contaminated sediments from the source area in 2007 and 2008. Two-dimensional reactive transport simulations of MTBE and TBA along the plume centerline were conducted for a 20-year period following the spill. As previously reported by Rasa et al. (2011), these analyses suggest that MTBE diffused from the thin anaerobic aquifer into the adjacent anaerobic silts and transformed to TBA in both aquifer and silt layers. After 2004, TBA was the dominant solute, diffusing back out of the silts into the aquifer and sustaining plume concentrations. Simulations also suggest that aerobic degradation of MTBE or TBA at the water table in the overlying silt layer significantly reduced the time for MTBE and TBA concentrations to reach regulatory goals by limiting the chemical mass available for back diffusion to the aquifer. We have extended that prior work; using the same reaction and diffusion parameters, we explored the sensitivity of the results to thicknesses of the alluvial layers in order to determine under what sets of conditions a reaction zone accessed only by vertical diffusion through a silt from an underlying contaminated aquifer can significantly affect time to achievement of compliance goals within the aquifer.

Co-evolution of somatic variation in primary and metastatic colorectal cancer may expand biopsy indications in the molecular era.

PubMed

Kim, Richard; Schell, Michael J; Teer, Jamie K; Greenawalt, Danielle M; Yang, Mingli; Yeatman, Timothy J

2015-01-01

Metastasis is thought to be a clonal event whereby a single cell initiates the development of a new tumor at a distant site. However the degree to which primary and metastatic tumors differ on a molecular level remains unclear. To further evaluate these concepts, we used next generation sequencing (NGS) to assess the molecular composition of paired primary and metastatic colorectal cancer tissue specimens. 468 colorectal tumor samples from a large personalized medicine initiative were assessed by targeted gene sequencing of 1,321 individual genes. Eighteen patients produced genomic profiles for 17 paired primary:metastatic (and 2 metastatic:metastatic) specimens. An average of 33.3 mutations/tumor were concordant (shared) between matched samples, including common well-known genes (APC, KRAS, TP53). An average of 2.3 mutations/tumor were discordant (unshared) among paired sites. KRAS mutational status was always concordant. The overall concordance rate for mutations was 93.5%; however, nearly all (18/19 (94.7%)) paired tumors showed at least one mutational discordance. Mutations were seen in: TTN, the largest gene (5 discordant pairs), ADAMTS20, APC, MACF1, RASA1, TP53, and WNT2 (2 discordant pairs), SMAD2, SMAD3, SMAD4, FBXW7, and 66 others (1 discordant pair). Whereas primary and metastatic tumors displayed little variance overall, co-evolution produced incremental mutations in both. These results suggest that while biopsy of the primary tumor alone is likely sufficient in the chemotherapy-naïve patient, additional biopsies of primary or metastatic disease may be necessary to precisely tailor therapy following chemotherapy resistance or insensitivity in order to adequately account for tumor evolution.

Co-Evolution of Somatic Variation in Primary and Metastatic Colorectal Cancer May Expand Biopsy Indications in the Molecular Era

PubMed Central

Kim, Richard; Schell, Michael J.; Teer, Jamie K.; Greenawalt, Danielle M.; Yang, Mingli; Yeatman, Timothy J.

2015-01-01

Introduction Metastasis is thought to be a clonal event whereby a single cell initiates the development of a new tumor at a distant site. However the degree to which primary and metastatic tumors differ on a molecular level remains unclear. To further evaluate these concepts, we used next generation sequencing (NGS) to assess the molecular composition of paired primary and metastatic colorectal cancer tissue specimens. Methods 468 colorectal tumor samples from a large personalized medicine initiative were assessed by targeted gene sequencing of 1,321 individual genes. Eighteen patients produced genomic profiles for 17 paired primary:metastatic (and 2 metastatic:metastatic) specimens. Results An average of 33.3 mutations/tumor were concordant (shared) between matched samples, including common well-known genes (APC, KRAS, TP53). An average of 2.3 mutations/tumor were discordant (unshared) among paired sites. KRAS mutational status was always concordant. The overall concordance rate for mutations was 93.5%; however, nearly all (18/19 (94.7%)) paired tumors showed at least one mutational discordance. Mutations were seen in: TTN, the largest gene (5 discordant pairs), ADAMTS20, APC, MACF1, RASA1, TP53, and WNT2 (2 discordant pairs), SMAD2, SMAD3, SMAD4, FBXW7, and 66 others (1 discordant pair). Conclusions Whereas primary and metastatic tumors displayed little variance overall, co-evolution produced incremental mutations in both. These results suggest that while biopsy of the primary tumor alone is likely sufficient in the chemotherapy-naïve patient, additional biopsies of primary or metastatic disease may be necessary to precisely tailor therapy following chemotherapy resistance or insensitivity in order to adequately account for tumor evolution. PMID:25974029

Understanding Brain, Mind and Soul: Contributions from Neurology and Neurosurgery

PubMed Central

Pandya, Sunil K.

2011-01-01

Treatment of diseases of the brain by drugs or surgery necessitates an understanding of its structure and functions. The philosophical neurosurgeon soon encounters difficulties when localising the abstract concepts of mind and soul within the tangible 1300-gram organ containing 100 billion neurones. Hippocrates had focused attention on the brain as the seat of the mind. The tabula rasa postulated by Aristotle cannot be localised to a particular part of the brain with the confidence that we can localise spoken speech to Broca’s area or the movement of limbs to the contralateral motor cortex. Galen’s localisation of imagination, reasoning, judgement and memory in the cerebral ventricles collapsed once it was evident that the functional units–neurones–lay in the parenchyma of the brain. Experiences gained from accidental injuries (Phineas Gage) or temporal lobe resection (William Beecher Scoville); studies on how we see and hear and more recent data from functional magnetic resonance studies have made us aware of the extensive network of neurones in the cerebral hemispheres that subserve the functions of the mind. The soul or atman, credited with the ability to enliven the body, was located by ancient anatomists and philosophers in the lungs or heart, in the pineal gland (Descartes), and generally in the brain. When the deeper parts of the brain came within the reach of neurosurgeons, the brainstem proved exceptionally delicate and vulnerable. The concept of brain death after irreversible damage to it has made all of us aware of ‘the cocktail of brain soup and spark’ in the brainstem so necessary for life. If there be a soul in each of us, surely, it is enshrined here. PMID:21694966

Comprehensive assessment of cancer missense mutation clustering in protein structures.

PubMed

Kamburov, Atanas; Lawrence, Michael S; Polak, Paz; Leshchiner, Ignaty; Lage, Kasper; Golub, Todd R; Lander, Eric S; Getz, Gad

2015-10-06

Large-scale tumor sequencing projects enabled the identification of many new cancer gene candidates through computational approaches. Here, we describe a general method to detect cancer genes based on significant 3D clustering of mutations relative to the structure of the encoded protein products. The approach can also be used to search for proteins with an enrichment of mutations at binding interfaces with a protein, nucleic acid, or small molecule partner. We applied this approach to systematically analyze the PanCancer compendium of somatic mutations from 4,742 tumors relative to all known 3D structures of human proteins in the Protein Data Bank. We detected significant 3D clustering of missense mutations in several previously known oncoproteins including HRAS, EGFR, and PIK3CA. Although clustering of missense mutations is often regarded as a hallmark of oncoproteins, we observed that a number of tumor suppressors, including FBXW7, VHL, and STK11, also showed such clustering. Beside these known cases, we also identified significant 3D clustering of missense mutations in NUF2, which encodes a component of the kinetochore, that could affect chromosome segregation and lead to aneuploidy. Analysis of interaction interfaces revealed enrichment of mutations in the interfaces between FBXW7-CCNE1, HRAS-RASA1, CUL4B-CAND1, OGT-HCFC1, PPP2R1A-PPP2R5C/PPP2R2A, DICER1-Mg2+, MAX-DNA, SRSF2-RNA, and others. Together, our results indicate that systematic consideration of 3D structure can assist in the identification of cancer genes and in the understanding of the functional role of their mutations.

Comprehensive assessment of cancer missense mutation clustering in protein structures

PubMed Central

Kamburov, Atanas; Lawrence, Michael S.; Polak, Paz; Leshchiner, Ignaty; Lage, Kasper; Golub, Todd R.; Lander, Eric S.; Getz, Gad

2015-01-01

Large-scale tumor sequencing projects enabled the identification of many new cancer gene candidates through computational approaches. Here, we describe a general method to detect cancer genes based on significant 3D clustering of mutations relative to the structure of the encoded protein products. The approach can also be used to search for proteins with an enrichment of mutations at binding interfaces with a protein, nucleic acid, or small molecule partner. We applied this approach to systematically analyze the PanCancer compendium of somatic mutations from 4,742 tumors relative to all known 3D structures of human proteins in the Protein Data Bank. We detected significant 3D clustering of missense mutations in several previously known oncoproteins including HRAS, EGFR, and PIK3CA. Although clustering of missense mutations is often regarded as a hallmark of oncoproteins, we observed that a number of tumor suppressors, including FBXW7, VHL, and STK11, also showed such clustering. Beside these known cases, we also identified significant 3D clustering of missense mutations in NUF2, which encodes a component of the kinetochore, that could affect chromosome segregation and lead to aneuploidy. Analysis of interaction interfaces revealed enrichment of mutations in the interfaces between FBXW7-CCNE1, HRAS-RASA1, CUL4B-CAND1, OGT-HCFC1, PPP2R1A-PPP2R5C/PPP2R2A, DICER1-Mg2+, MAX-DNA, SRSF2-RNA, and others. Together, our results indicate that systematic consideration of 3D structure can assist in the identification of cancer genes and in the understanding of the functional role of their mutations. PMID:26392535

Catalysis of GTP Hydrolysis by Small GTPases at Atomic Detail by Integration of X-ray Crystallography, Experimental, and Theoretical IR Spectroscopy*

PubMed Central

Rudack, Till; Jenrich, Sarah; Brucker, Sven; Vetter, Ingrid R.; Gerwert, Klaus; Kötting, Carsten

2015-01-01

Small GTPases regulate key processes in cells. Malfunction of their GTPase reaction by mutations is involved in severe diseases. Here, we compare the GTPase reaction of the slower hydrolyzing GTPase Ran with Ras. By combination of time-resolved FTIR difference spectroscopy and QM/MM simulations we elucidate that the Mg2+ coordination by the phosphate groups, which varies largely among the x-ray structures, is the same for Ran and Ras. A new x-ray structure of a Ran·RanBD1 complex with improved resolution confirmed this finding and revealed a general problem with the refinement of Mg2+ in GTPases. The Mg2+ coordination is not responsible for the much slower GTPase reaction of Ran. Instead, the location of the Tyr-39 side chain of Ran between the γ-phosphate and Gln-69 prevents the optimal positioning of the attacking water molecule by the Gln-69 relative to the γ-phosphate. This is confirmed in the RanY39A·RanBD1 crystal structure. The QM/MM simulations provide IR spectra of the catalytic center, which agree very nicely with the experimental ones. The combination of both methods can correlate spectra with structure at atomic detail. For example the FTIR difference spectra of RasA18T and RanT25A mutants show that spectral differences are mainly due to the hydrogen bond of Thr-25 to the α-phosphate in Ran. By integration of x-ray structure analysis, experimental, and theoretical IR spectroscopy the catalytic center of the x-ray structural models are further refined to sub-Å resolution, allowing an improved understanding of catalysis. PMID:26272610

Failure to establish and maintain a pregnancy in undernourished recipient ewes is associated with a poor endocrine milieu in the early luteal phase.

PubMed

de Brun, Victoria; Meikle, Ana; Fernández-Foren, Andrea; Forcada, Fernando; Palacín, Inmaculada; Menchaca, Alejo; Sosa, Cecilia; Abecia, José-Alfonso

2016-10-01

Embryos from undernourished and control donor ewes were transferred to undernourished and control recipient ewes. Progesterone and metabolic hormones were investigated in recipient ewes to determine their association with pregnancy success. Forty-five donor and 52 recipient Rasa Aragonesa ewes were fed 1.5 (control group; donor n=20; recipient n=25) or 0.5 (low group; donor n=25; recipient n=27) times the daily requirements for maintenance from the onset of estrous synchronization treatment to embryo collection and transfer. The embryos were collected 7days after the onset of estrus (day 0), and two good-quality embryos were transferred into each recipient ewe. The percentage of pregnant ewes on day 18 and 40 did not differ between the two groups, although the recipient undernourished ewes tended to have greater late embryonic mortality (from days 18-40) than the control recipient ewes (P=0.11). No effect of the nutrition of the donor was found. Recipients that became pregnant had a higher ovulation rate than non-pregnant ewes (P=0.02). Undernourished ewes had lower plasma insulin concentrations than control ewes (P=0.03), and those that suffered late embryo mortality (from days 18-40) tended to have lower insulin and progesterone concentrations than their counterparts that remained pregnant (P=0.06 and P=0.07, respectively). In this study, pregnancy in control and undernourished recipient ewes was not associated with the origin of the embryo (undernourished and control donors). In conclusion, failure to establish and maintain a pregnancy was associated with lower progesterone and insulin levels one week after estrus in recipient ewes. Copyright © 2016 Elsevier B.V. All rights reserved.

Meta-analysis of genome-wide association studies for personality

PubMed Central

de Moor, Marleen H.M.; Costa, Paul T.; Terracciano, Antonio; Krueger, Robert F.; de Geus, Eco J.C.; Toshiko, Tanaka; Penninx, Brenda W.J.H.; Esko, Tõnu; Madden, Pamela A F; Derringer, Jaime; Amin, Najaf; Willemsen, Gonneke; Hottenga, Jouke-Jan; Distel, Marijn A.; Uda, Manuela; Sanna, Serena; Spinhoven, Philip; Hartman, Catharina A.; Sullivan, Patrick; Realo, Anu; Allik, Jüri; Heath, Andrew C; Pergadia, Michele L; Agrawal, Arpana; Lin, Peng; Grucza, Richard; Nutile, Teresa; Ciullo, Marina; Rujescu, Dan; Giegling, Ina; Konte, Bettina; Widen, Elisabeth; Cousminer, Diana L; Eriksson, Johan G.; Palotie, Aarno; Luciano, Michelle; Tenesa, Albert; Davies, Gail; Lopez, Lorna M.; Hansell, Narelle K.; Medland, Sarah E.; Ferrucci, Luigi; Schlessinger, David; Montgomery, Grant W.; Wright, Margaret J.; Aulchenko, Yurii S.; Janssens, A.Cecile J.W.; Oostra, Ben A.; Metspalu, Andres; Abecasis, Gonçalo R.; Deary, Ian J.; Räikkönen, Katri; Bierut, Laura J.; Martin, Nicholas G.; van Duijn, Cornelia M.; Boomsma, Dorret I.

2013-01-01

Personality can be thought of as a set of characteristics that influence people’s thoughts, feelings, and behaviour across a variety of settings. Variation in personality is predictive of many outcomes in life, including mental health. Here we report on a meta-analysis of genome-wide association (GWA) data for personality in ten discovery samples (17 375 adults) and five in-silico replication samples (3 294 adults). All participants were of European ancestry. Personality scores for Neuroticism, Extraversion, Openness to Experience, Agreeableness, and Conscientiousness were based on the NEO Five-Factor Inventory. Genotype data were available of ~2.4M Single Nucleotide Polymorphisms (SNPs; directly typed and imputed using HAPMAP data). In the discovery samples, classical association analyses were performed under an additive model followed by meta-analysis using the weighted inverse variance method. Results showed genome-wide significance for Openness to Experience near the RASA1 gene on 5q14.3 (rs1477268 and rs2032794, P = 2.8 × 10−8 and 3.1 × 10−8) and for Conscientiousness in the brain-expressed KATNAL2 gene on 18q21.1 (rs2576037, P = 4.9 × 10−8). We further conducted a gene-based test that confirmed the association of KATNAL2 to Conscientiousness. In-silico replication did not, however, show significant associations of the top SNPs with Openness and Conscientiousness, although the direction of effect of the KATNAL2 SNP on Conscientiousness was consistent in all replication samples. Larger scale GWA studies and alternative approaches are required for confirmation of KATNAL2 as a novel gene affecting Conscientiousness. PMID:21173776

Cancer driver-passenger distinction via sporadic human and dog cancer comparison: a proof of principle study with colorectal cancer

PubMed Central

Tang, Jie; Li, Yaping; Lyon, Kenneth; Camps, Jordi; Dalton, Stephen; Ried, Thomas; Zhao, Shaying

2014-01-01

Herein we report a proof of principle study illustrating a novel dog-human comparison strategy that addresses a central aim of cancer research, namely cancer driver–passenger distinction. We previously demonstrated that sporadic canine colorectal cancers (CRCs) share similar molecular pathogenesis mechanisms as their human counterparts. In this study, we compared the genome-wide copy number abnormalities between 29 human- and 10 canine sporadic CRCs. This led to the identification of 73 driver candidate genes (DCGs), altered in both species and with 27 from the whole genome and 46 from dog-human genomic rearrangement breakpoint (GRB) regions, as well as 38 passenger candidate genes (PCGs), altered in humans only and located in GRB regions. We noted that DCGs significantly differ from PCGs in every analysis conducted to assess their cancer relevance and biological functions. Importantly, while PCGs are not enriched in any specific functions, DCGs possess significantly enhanced functionality closely associated with cell proliferation and death regulation, as well as with epithelial cell apicobasal polarity establishment/maintenance. These observations support the notion that, in sporadic CRCs of both species, cell polarity genes not only contribute in preventing cancer cell invasion and spreading, but also likely serve as tumor suppressors by modulating cell growth. This pilot study validates our novel strategy and has uncovered four new potential cell polarity and colorectal tumor suppressor genes (RASA3, NUPL1, DENND5A, and AVL9). Expansion of this study would make more driver-passenger distinctions for cancers with large genomic amplifications or deletions, and address key questions regarding the relationship between cancer pathogenesis and epithelial cell polarity control in mammals. PMID:23416983

Cancer driver-passenger distinction via sporadic human and dog cancer comparison: a proof-of-principle study with colorectal cancer.

PubMed

Tang, J; Li, Y; Lyon, K; Camps, J; Dalton, S; Ried, T; Zhao, S

2014-02-13

Herein we report a proof-of-principle study illustrating a novel dog-human comparison strategy that addresses a central aim of cancer research, namely cancer driver-passenger distinction. We previously demonstrated that sporadic canine colorectal cancers (CRCs) share similar molecular pathogenesis mechanisms as their human counterparts. In this study, we compared the genome-wide copy number abnormalities between 29 human and 10 canine sporadic CRCs. This led to the identification of 73 driver candidate genes (DCGs), altered in both species, and with 27 from the whole genome and 46 from dog-human genomic rearrangement breakpoint (GRB) regions, as well as 38 passenger candidate genes (PCGs), altered in humans only and located in GRB regions. We noted that DCGs significantly differ from PCGs in every analysis conducted to assess their cancer relevance and biological functions. Importantly, although PCGs are not enriched in any specific functions, DCGs possess significantly enhanced functionality closely associated with cell proliferation and death regulation, as well as with epithelial cell apicobasal polarity establishment/maintenance. These observations support the notion that, in sporadic CRCs of both species, cell polarity genes not only contribute in preventing cancer cell invasion and spreading, but also likely serve as tumor suppressors by modulating cell growth. This pilot study validates our novel strategy and has uncovered four new potential cell polarity and colorectal tumor suppressor genes (RASA3, NUPL1, DENND5A and AVL9). Expansion of this study would make more driver-passenger distinctions for cancers with large genomic amplifications or deletions, and address key questions regarding the relationship between cancer pathogenesis and epithelial cell polarity control in mammals.

Epigenomic Promoter Alterations Amplify Gene Isoform and Immunogenic Diversity in Gastric Adenocarcinoma.

PubMed

Qamra, Aditi; Xing, Manjie; Padmanabhan, Nisha; Kwok, Jeffrey Jun Ting; Zhang, Shenli; Xu, Chang; Leong, Yan Shan; Lee Lim, Ai Ping; Tang, Qianqao; Ooi, Wen Fong; Suling Lin, Joyce; Nandi, Tannistha; Yao, Xiaosai; Ong, Xuewen; Lee, Minghui; Tay, Su Ting; Keng, Angie Tan Lay; Gondo Santoso, Erna; Ng, Cedric Chuan Young; Ng, Alvin; Jusakul, Apinya; Smoot, Duane; Ashktorab, Hassan; Rha, Sun Young; Yeoh, Khay Guan; Peng Yong, Wei; Chow, Pierce K H; Chan, Weng Hoong; Ong, Hock Soo; Soo, Khee Chee; Kim, Kyoung-Mee; Wong, Wai Keong; Rozen, Steven G; Teh, Bin Tean; Kappei, Dennis; Lee, Jeeyun; Connolly, John; Tan, Patrick

2017-06-01

Promoter elements play important roles in isoform and cell type-specific expression. We surveyed the epigenomic promoter landscape of gastric adenocarcinoma, analyzing 110 chromatin profiles (H3K4me3, H3K4me1, H3K27ac) of primary gastric cancers, gastric cancer lines, and nonmalignant gastric tissues. We identified nearly 2,000 promoter alterations (somatic promoters), many deregulated in various epithelial malignancies and mapping frequently to alternative promoters within the same gene, generating potential pro-oncogenic isoforms ( RASA3 ). Somatic promoter-associated N-terminal peptides displaying relative depletion in tumors exhibited high-affinity MHC binding predictions and elicited potent T-cell responses in vitro , suggesting a mechanism for reducing tumor antigenicity. In multiple patient cohorts, gastric cancers with high somatic promoter usage also displayed reduced T-cell cytolytic marker expression. Somatic promoters are enriched in PRC2 occupancy, display sensitivity to EZH2 therapeutic inhibition, and are associated with novel cancer-associated transcripts. By generating tumor-specific isoforms and decreasing tumor antigenicity, epigenomic promoter alterations may thus drive intrinsic tumorigenesis and also allow nascent cancers to evade host immunity. Significance: We apply epigenomic profiling to demarcate the promoter landscape of gastric cancer. Many tumor-specific promoters activate different promoters in the same gene, some generating pro-oncogenic isoforms. Tumor-specific promoters also reduce tumor antigenicity by causing relative depletion of immunogenic peptides, contributing to cancer immunoediting and allowing tumors to evade host immune attack. Cancer Discov; 7(6); 630-51. ©2017 AACR. This article is highlighted in the In This Issue feature, p. 539 . ©2017 American Association for Cancer Research.

Ayurvedic approach in the management of spinocerebellar ataxia-2.

PubMed

Singh, Sarvesh Kumar; Rajoria, Kshipra

2016-01-01

Spinocerebellar ataxia -2 is a progressive, degenerative genetic disease caused by an expanded (CAG) trinucleotide repetition on the chromosome 12 resulting in production of an abnormal protein called ataxin-2. There is no known effective management or cure in biomedicine for this genetic disease. In the present study a case of SCA2 that was treated with Ayurvedic intervention is reported. Ayurvedic treatments in this case were directed towards alleviating symptoms and to reduce severe disability due to progressive nature of disease. A 42 year old male patient was diagnosed for Vāta vyādhi (group of various neurological disorders) and was- treated with Śālisastika pinda svedana (sudation with bolus of medicated cooked rice) for 30 days-, Śirobasti (sudation of head with the help of a cap on head) with Aśvagandhā taila for 45 days and Balādi ksīra basti (enema with medicated milk) with Aśvagandhā taila anuvāsana (enema with oil) for 30 days in Karma basti krama (30 days regime of purification and oleation enema) along with a combination of Ayurvedic oral drugs which consisted of Brahadvātacintāmanirasa - 125 mg, Vasantāmaltī rasa- 125 mg, Daśamūla kvātha- 40 ml, Aśvagandhā cūrṇa (powder of Withania somnifera DUNAL)- 3g, Amrtā cūrṇa (powder of Tinospora cordifolia Willd.)- 500 mg, Muktāśukti pisti - 500 mg, Yogarāja Guggulu - 500 mg twice a day for 2 months. Patient's condition was assessed on the Scale for Assessment and Rating of Ataxia (SARA). Before treatment, mean SARA score was 35. This reduced to 15 after treatment. Good relief in dysarthria, fasciculation, heaviness in eye, blurred vision, axial tremor; constipation and quality of life were observed in this case.

PA01.34. Catagorical interpretation in Microsoft excel of jangam dravya database from Bruhat-Trayi & Laghu-Trayi

PubMed Central

Saraf, Abhijeet

2012-01-01

Purpose: Not a single drug in Ayurveda has been termed as non-medicinal. This means every Dravya has medicinal value in this world. Jangam dravya is an animal sourced medicine. In samhita Jangam Dravya are described first. So as per Krama Varnan Vichar, Jangam Dravyas are significant in this type. In Ayurvedic literature there is more literature on Audbhid & Parthiva Dravyas. I Total available nighantu: more than 25. Total available Rasa Grantha: about 145. There is no one Grantha on Jangam Dravya which describes their whole information. Jangam Dravyas are described in Ayurvedic literature in different views and in different branches. Gross description is available in Samhitas. But they aren’t in format. They are not compiled according to their Guna Karma, Upayogitwa, Vyadhiharatwa, and Kalpa etc. Their use in Chikitsa is minimal as their ready references are not available, though very much effective. So due to sheer need of compilation of these references this topic was selected for study. The basic need for study of Jangam Dravya is to prepare its whole DATABASE. So through this study Database of Jangam Dravya can be available like Jangam Dravya. Method: Selection of topic this is a fundamental & literary study, Selection of material, Selection of Database software & font, Collection of data & preparation of Master Chart, Preparation of Database, Interpretation & summarization of data. Result: So in this paper, we are going to focus on literature availability of jangam dravya with the help of modern technique like Microsoft Excel. And also how we can prepare and use the categorical interpretation of jangam dravya with help of database Conclusion: Jangam Dravyas are described in Ayurvedic literature in different views and in different branches. Importances of these dravyas are the main key point of this study.

Using Uncertainty Quantification to Guide Development and Improvements of a Regional-Scale Model of the Coastal Lowlands Aquifer System Spanning Texas, Louisiana, Mississippi, Alabama and Florida

NASA Astrophysics Data System (ADS)

Foster, L. K.; Clark, B. R.; Duncan, L. L.; Tebo, D. T.; White, J.

2017-12-01

Several historical groundwater models exist within the Coastal Lowlands Aquifer System (CLAS), which spans the Gulf Coastal Plain in Texas, Louisiana, Mississippi, Alabama, and Florida. The largest of these models, called the Gulf Coast Regional Aquifer System Analysis (RASA) model, has been brought into a new framework using the Newton formulation for MODFLOW-2005 (MODFLOW-NWT) and serves as the starting point of a new investigation underway by the U.S. Geological Survey to improve understanding of the CLAS and provide predictions of future groundwater availability within an uncertainty quantification (UQ) framework. The use of an UQ framework will not only provide estimates of water-level observation worth, hydraulic parameter uncertainty, boundary-condition uncertainty, and uncertainty of future potential predictions, but it will also guide the model development process. Traditionally, model development proceeds from dataset construction to the process of deterministic history matching, followed by deterministic predictions using the model. This investigation will combine the use of UQ with existing historical models of the study area to assess in a quantitative framework the effect model package and property improvements have on the ability to represent past-system states, as well as the effect on the model's ability to make certain predictions of water levels, water budgets, and base-flow estimates. Estimates of hydraulic property information and boundary conditions from the existing models and literature, forming the prior, will be used to make initial estimates of model forecasts and their corresponding uncertainty, along with an uncalibrated groundwater model run within an unconstrained Monte Carlo analysis. First-Order Second-Moment (FOSM) analysis will also be used to investigate parameter and predictive uncertainty, and guide next steps in model development prior to rigorous history matching by using PEST++ parameter estimation code.

Catalysis of GTP hydrolysis by small GTPases at atomic detail by integration of X-ray crystallography, experimental, and theoretical IR spectroscopy.

PubMed

Rudack, Till; Jenrich, Sarah; Brucker, Sven; Vetter, Ingrid R; Gerwert, Klaus; Kötting, Carsten

2015-10-02

Small GTPases regulate key processes in cells. Malfunction of their GTPase reaction by mutations is involved in severe diseases. Here, we compare the GTPase reaction of the slower hydrolyzing GTPase Ran with Ras. By combination of time-resolved FTIR difference spectroscopy and QM/MM simulations we elucidate that the Mg(2+) coordination by the phosphate groups, which varies largely among the x-ray structures, is the same for Ran and Ras. A new x-ray structure of a Ran·RanBD1 complex with improved resolution confirmed this finding and revealed a general problem with the refinement of Mg(2+) in GTPases. The Mg(2+) coordination is not responsible for the much slower GTPase reaction of Ran. Instead, the location of the Tyr-39 side chain of Ran between the γ-phosphate and Gln-69 prevents the optimal positioning of the attacking water molecule by the Gln-69 relative to the γ-phosphate. This is confirmed in the RanY39A·RanBD1 crystal structure. The QM/MM simulations provide IR spectra of the catalytic center, which agree very nicely with the experimental ones. The combination of both methods can correlate spectra with structure at atomic detail. For example the FTIR difference spectra of RasA18T and RanT25A mutants show that spectral differences are mainly due to the hydrogen bond of Thr-25 to the α-phosphate in Ran. By integration of x-ray structure analysis, experimental, and theoretical IR spectroscopy the catalytic center of the x-ray structural models are further refined to sub-Å resolution, allowing an improved understanding of catalysis. © 2015 by The American Society for Biochemistry and Molecular Biology, Inc.

Solar cell efficiency and high temperature processing of n-type silicon grown by the noncontact crucible method

DOE PAGES

Jensen, Mallory A.; LaSalvia, Vincenzo; Morishige, Ashley E.; ...

2016-08-01

The capital expense (capex) of conventional crystal growth methods is a barrier to sustainable growth of the photovoltaic industry. It is challenging for innovative techniques to displace conventional growth methods due the low dislocation density and high lifetime required for high efficiency devices. One promising innovation in crystal growth is the noncontact crucible method (NOC-Si), which combines aspects of Czochralski (Cz) and conventional casting. This material has the potential to satisfy the dual requirements, with capex likely between that of Cz (high capex) and multicrystalline silicon (mc-Si, low capex). In this contribution, we observe a strong dependence of solar cellmore » efficiency on ingot height, correlated with the evolution of swirl-like defects, for single crystalline n-type silicon grown by the NOC-Si method. We posit that these defects are similar to those observed in Cz, and we explore the response of NOC-Si to high temperature treatments including phosphorous diffusion gettering (PDG) and Tabula Rasa (TR). The highest lifetimes (2033 us for the top of the ingot and 342 us for the bottom of the ingot) are achieved for TR followed by a PDG process comprising a standard plateau and a low temperature anneal. Further improvements can be gained by tailoring the time-temperature profiles of each process. Lifetime analysis after the PDG process indicates the presence of a getterable impurity in the as-grown material, while analysis after TR points to the presence of oxide precipitates especially at the bottom of the ingot. Uniform lifetime degradation is observed after TR which we assign to a presently unknown defect. Lastly, future work includes additional TR processing to uncover the nature of this defect, microstructural characterization of suspected oxide precipitates, and optimization of the TR process to achieve the dual goals of high lifetime and spatial homogenization.« less

Human genetics and molecular mechanisms of vein of Galen malformation.

PubMed

Duran, Daniel; Karschnia, Philipp; Gaillard, Jonathan R; Karimy, Jason K; Youngblood, Mark W; DiLuna, Michael L; Matouk, Charles C; Aagaard-Kienitz, Beverly; Smith, Edward R; Orbach, Darren B; Rodesch, Georges; Berenstein, Alejandro; Gunel, Murat; Kahle, Kristopher T

2018-04-01

Vein of Galen malformations (VOGMs) are rare developmental cerebrovascular lesions characterized by fistulas between the choroidal circulation and the median prosencephalic vein. Although the treatment of VOGMs has greatly benefited from advances in endovascular therapy, including technical innovation in interventional neuroradiology, many patients are recalcitrant to procedural intervention or lack accessibility to specialized care centers, highlighting the need for improved screening, diagnostics, and therapeutics. A fundamental obstacle to identifying novel targets is the limited understanding of VOGM molecular pathophysiology, including its human genetics, and the lack of an adequate VOGM animal model. Herein, the known human mutations associated with VOGMs are reviewed to provide a framework for future gene discovery. Gene mutations have been identified in 2 Mendelian syndromes of which VOGM is an infrequent but associated phenotype: capillary malformation-arteriovenous malformation syndrome ( RASA1) and hereditary hemorrhagic telangiectasia ( ENG and ACVRL1). However, these mutations probably represent only a small fraction of all VOGM cases. Traditional genetic approaches have been limited in their ability to identify additional causative genes for VOGM because kindreds are rare, limited in patient number, and/or seem to have sporadic inheritance patterns, attributable in part to incomplete penetrance and phenotypic variability. The authors hypothesize that the apparent sporadic occurrence of VOGM may frequently be attributable to de novo mutation or incomplete penetrance of rare transmitted variants. Collaboration among treating physicians, patients' families, and investigators using next-generation sequencing could lead to the discovery of novel genes for VOGM. This could improve the understanding of normal vascular biology, elucidate the pathogenesis of VOGM and possibly other more common arteriovenous malformation subtypes, and pave the way for advances

Application of a Geographic Information System for regridding a ground-water flow model of the Columbia Plateau Regional Aquifer System, Walla Walla River basin, Oregon-Washington

USGS Publications Warehouse

Darling, M.E.; Hubbard, L.E.

1994-01-01

Computerized Geographic Information Systems (GIS) have become viable and valuable tools for managing,analyzing, creating, and displaying data for three-dimensional finite-difference ground-water flow models. Three GIS applications demonstrated in this study are: (1) regridding of data arrays from an existing large-area, low resolution ground-water model to a smaller, high resolution grid; (2) use of GIS techniques for assembly of data-input arrays for a ground-water model; and (3) use of GIS for rapid display of data for verification, for checking of ground-water model output, and for the cre.ation of customized maps for use in reports. The Walla Walla River Basin was selected as the location for the demonstration because (1) data from a low resolution ground-water model (Columbia Plateau Regional Aquifer System Analysis [RASA]) were available and (2) concern for long-term use of water resources for irrigation in the basin. The principal advantage of regridding is that it may provide the ability to more precisely calibrate a model, assuming chat a more detailed coverage of data is available, and to evaluate the numerical errors associated with a particular grid design.Regridding gave about an 8-fold increase in grid-node density.Several FORTRAN programs were developed to load the regridded ground-water data into a finite-difference modular model as model-compatible input files for use in a steady-state model run.To facilitate the checking and validating of the GIS regridding process, maps and tabular reports were produced for each of eight ground-water parameters by model layer. Also, an automated subroutine that was developed to view the model-calculated water levels in cross-section will aid in the synthesis and interpretation of model results.

Plant growth on debris covered glacier surfaces - ecology, vegetation patterns and implications for debris mantled glaciers serving as cold and warm stage plant refugia in the past

NASA Astrophysics Data System (ADS)

Fickert, Thomas; Friend, Donald; Grüninger, Friederike; Molnia, Bruce; Richter, Michael

2017-04-01

As stated at the International Conference on Debris-Covered Glaciers in 2000, "debris-covered glaciers comprise a significant fraction of the global population of glaciers...." Given a minimum of debris thickness and sufficient stability, these surfaces host surprisingly diverse plant assemblages, both floristically and structurally. Observations of plant growth on glacier surfaces are reported from around the world - including mature forests with trees more than 50cm in diameter. Debris covered glacier surfaces are mobile habitats for plants, which migrate downhill with glacier movement, but are able to spread upward with strong anabatic valley winds. Plant growth is possible even on a very shallow debris cover. Depending on site conditions, floristic composition and structure of vegetation on debris covered glaciers represent a mosaic of environments, including subnival pioneer communities, glacier foreland early- to late-successional stages, and morainal locations. The taxa involved display a wide spectrum of adaptations to habitat conditions with particular migration and dispersal strategies. With a shallow debris cover, alpine/subnival taxa can grow considerably below their usual altitudinal niche due to the cooler subsurface soil temperatures. In contrast, a greater thickness of debris cover allows even thermophilous plants of lower elevations to grow on glacier surfaces. Employing the principle of actualism, debris covered glaciers provided important and previously undocumented refugia for plants during the Pleistocene cold stages from which alpine and arctic plant species were able to re-establish and spread in post-glacial time. This assumption is complementary to the two competing ideas to explain the fate of alpine and/or arctic taxa during the Pleistocene, the nunatak hypothesis (i.e. in-situ survival of plants on unglaciated summits) and tabula rasa theory (i.e. displacement of plants and subsequent remigration). Vice versa debris covered glaciers

A Metallurgical Study of Nāga Bhasma.

PubMed

Singh Gautam, Dev Nath

2017-01-01

The metal Nāga (Lead) is being used by Indians since ancient times. Its external and internal uses have been described in Caraka, Suśruta and other Ayurvedic Saṃhitā . According to most of the Rasa texts, Nāga Bhasma and its formulations are used in many diseases such as Prameha , Jvara , Gulma , Śukrameha etc. In the present study, Nāga Bhasma was prepared by the traditional Puṭa method (TPM) and by the electric muffle furnace Puṭa method (EMFPM) and standardized using Metallographic studies. Doing so helps in the study of the microstructure of Nāga Bhasma and also helps in the identification of the metal particles along with the nature of compound formed during the Māraṇa (Bhasmīkaraṇa) process. Different samples from initial raw material to final product of Nāga Bhasma were collected during the pharmaceutical process (1 st , 30 th and 60 th Puṭa ) from both methods i.e. TPM and EMFPM. Samples from both methods were studied using metallographic examination. The processing of the Nāga Bhasma ( ṣaṣṭipuṭa ) was done according to Ānanda Kanda [9] Samples from the raw material i.e. Aśodhita Nāga (raw Lead) and that processed after 1 st , 30 th and 60 th Puṭa from both methods i.e. traditional Puṭa method (using heat from burning of cow dung cakes) and electric muffle furnace Puṭa method were taken. They were mounted on self hardening acrylic base. After careful polishing to obtain scratch free surface of product, they were used for metallurgical study. This study shows that traditional Puṭa method may be better than electric muffle furnace Puṭa method because of more homogeneous distribution of Lead sulphide in the Nāga Bhasma which is prepared by traditional method.

Hydrogeology and hydrogeologic terranes of the Blue Ridge and Piedmont Physiographic Provinces in the eastern United States

USGS Publications Warehouse

Mesko, Thomas O.; Swain, Lindsay A.; Hollyday, E.F.

2000-01-01

Severe and prolonged droughts between 1961 and 1988, combined with increased demands for freshwater supplies in the United States, have resulted in a critical need to assess the potential for development of ground- and surface-water supplies. Rapid industrial growth and urban expansion have caused existing freshwater supplies to be used at or near maximum capacity. Begun in 1978, the Regional Aquifer-System Analysis (RASA) Program of the U.S. Geological Survey (USGS) is a systematic effort to study a number of the Nation's most important aquifer systems, which, in aggregate, underlie much of the country and represent an important component of the Nation's total water supply. The broad objective for each of the 28 studies in the program is to assemble geologic, hydrologic, and geochemical information, to analyze and develop an understanding of the system, and to develop predictive capabilities that will contribute to the effective management of the system.In 1988, as part of the RASA Program, the USGS began a 6-year study of the ground-water resources of parts of 11 States in the Eastern United States (Swain and others, 1991). The study was designated the Appalachian Valley and Piedmont Regional Aquifer-System Analysis (APRASA). The APRASA team investigated ground-water resources primarily in the unglaciated part of the Valley and Ridge, the Blue Ridge, the New England, and the Piedmont Physiographic Provinces (fig. 1). For the purposes of this report, the small area in the New England Physiographic Province that is within the study area in New Jersey and Pennsylvania was considered part of the Piedmont Physiographic Province. The results of the APRASA are contained in about 50 reports and abstracts, including reports on simulation of ground-water flow in three type areas, this atlas, and chapters in Professional Paper 1422. These chapters include the summary (Chapter A), descriptions of recharge rates and surface- and ground-water relations (Chapter B

Structure, outcrop, and subcrop of the bedrock aquifers along the western margin of the Denver Basin, Colorado

USGS Publications Warehouse

Robson, Stanley G.; Van Slyke, George D.; Graham, Glenn

1998-01-01

Severe and prolonged droughts between 1961 and 1988, combined with increased demands for freshwater supplies in the United States, have resulted in a critical need to assess the potential for development of ground- and surface-water supplies. Rapid industrial growth and urban expansion have caused existing freshwater supplies to be used at or near maximum capacity. Begun in 1978, the Regional Aquifer-System Analysis (RASA) Program of the U.S. Geological Survey (USGS) is a systematic effort to study a number of the Nation's most important aquifer systems, which, in aggregate, underlie much of the country and represent an important component of the Nation's total water supply. The broad objective for each of the 28 studies in the program is to assemble geologic, hydrologic, and geochemical information, to analyze and develop an understanding of the system, and to develop predictive capabilities that will contribute to the effective management of the system.In 1988, as part of the RASA Program, the USGS began a 6-year study of the ground-water resources of parts of 11 States in the Eastern United States (Swain and others, 1991). The study was designated the Appalachian Valley and Piedmont Regional Aquifer-System Analysis (APRASA). The APRASA team investigated ground-water resources primarily in the unglaciated part of the Valley and Ridge, the Blue Ridge, the New England, and the Piedmont Physiographic Provinces (fig. 1). For the purposes of this report, the small area in the New England Physiographic Province that is within the study area in New Jersey and Pennsylvania was considered part of the Piedmont Physiographic Province. The results of the APRASA are contained in about 50 reports and abstracts, including reports on simulation of ground-water flow in three type areas, this atlas, and chapters in Professional Paper 1422. These chapters include the summary (Chapter A), descriptions of recharge rates and surface- and ground-water relations (Chapter B

Fusobacterium nucleatum Increases Proliferation of Colorectal Cancer Cells and Tumor Development in Mice by Activating Toll-Like Receptor 4 Signaling to Nuclear Factor-κB, and Up-regulating Expression of MicroRNA-21.

PubMed

Yang, Yongzhi; Weng, Wenhao; Peng, Junjie; Hong, Leiming; Yang, Lei; Toiyama, Yuji; Gao, Renyuan; Liu, Minfeng; Yin, Mingming; Pan, Cheng; Li, Hao; Guo, Bomin; Zhu, Qingchao; Wei, Qing; Moyer, Mary-Pat; Wang, Ping; Cai, Sanjun; Goel, Ajay; Qin, Huanlong; Ma, Yanlei

2017-03-01

colorectal tumors than mice given PBS and had shorter survival times. We found several inflammatory factors to be significantly increased in serum from mice given F nucleatum (interleukin 17F, interleukin 21, and interleukin 22, and MIP3A). We found 50 miRNAs to be significantly up-regulated and 52 miRNAs to be significantly down-regulated in CRCs incubated with F nucleatum vs PBS; levels of miR21 increased by the greatest amount (>4-fold). Inhibitors of miR21 prevented F nucleatum from inducing cell proliferation and invasion in culture. miR21a -/- mice had a later appearance of fecal blood and diarrhea after administration of azoxymethane and dextran sodium sulfate, and had longer survival times compared with control mice. The colorectum of miR21a -/- mice had fewer tumors, of smaller size, and the miR21a -/- mice survived longer than control mice. We found RASA1, which encodes an RAS GTPase, to be one of the target genes consistently down-regulated in cells that overexpressed miR21 and up-regulated in cells exposed to miR21 inhibitors. Infection of cells with F nucleatum increased expression of miR21 by activating Toll-like receptor 4 signaling to MYD88, leading to activation of the nuclear factor-κB. Levels of F nucleatum DNA and miR21 were increased in tumor tissues (and even more so in advanced tumor tissues) compared with non-tumor colon tissues from patients. Patients whose tumors had high amounts of F nucleatum DNA and miR21 had shorter survival times than patients whose tumors had lower amounts. We found infection of CRC cells with F nucleatum to increase their proliferation, invasive activity, and ability to form xenograft tumors in mice. Fusobacterium nucleatum activates Toll-like receptor 4 signaling to MYD88, leading to activation of the nuclear factor-κB and increased expression of miR21; this miRNA reduces levels of the RAS GTPase RASA1. Patients with both high amount of tissue F nucleatum DNA and miR21 demonstrated a higher risk for poor outcomes

Ayurvedic approach in the management of spinocerebellar ataxia-2

PubMed Central

Singh, Sarvesh Kumar; Rajoria, Kshipra

2016-01-01

Spinocerebellar ataxia -2 is a progressive, degenerative genetic disease caused by an expanded (CAG) trinucleotide repetition on the chromosome 12 resulting in production of an abnormal protein called ataxin-2. There is no known effective management or cure in biomedicine for this genetic disease. In the present study a case of SCA2 that was treated with Ayurvedic intervention is reported. Ayurvedic treatments in this case were directed towards alleviating symptoms and to reduce severe disability due to progressive nature of disease. A 42 year old male patient was diagnosed for Vāta vyādhi (group of various neurological disorders) and was- treated with Śālisastika pinda svedana (sudation with bolus of medicated cooked rice) for 30 days-, Śirobasti (sudation of head with the help of a cap on head) with Aśvagandhā taila for 45 days and Balādi ksīra basti (enema with medicated milk) with Aśvagandhā taila anuvāsana (enema with oil) for 30 days in Karma basti krama (30 days regime of purification and oleation enema) along with a combination of Ayurvedic oral drugs which consisted of Brahadvātacintāmanirasa – 125 mg, Vasantāmaltī rasa- 125 mg, Daśamūla kvātha- 40 ml, Aśvagandhā cūrṇa (powder of Withania somnifera DUNAL)- 3g, Amrtā cūrṇa (powder of Tinospora cordifolia Willd.)- 500 mg, Muktāśukti pisti – 500 mg, Yogarāja Guggulu – 500 mg twice a day for 2 months. Patient's condition was assessed on the Scale for Assessment and Rating of Ataxia (SARA). Before treatment, mean SARA score was 35. This reduced to 15 after treatment. Good relief in dysarthria, fasciculation, heaviness in eye, blurred vision, axial tremor; constipation and quality of life were observed in this case. PMID:27143801

Evaluating the reproductive ability of breeding rams in North-Eastern Spain using clinical examination of the body and external genitalia.

PubMed

Mozo, René; Galeote, Ana Isabel; Alabart, José Luis; Fantova, Enrique; Folch, José

2015-11-26

Predicting the ability of rams to detect, mate and fertilise ewes in oestrus accurately is certainly difficult; however, tests based on clinical examinations have been performed to assess the overall potential capacity of rams to serve and impregnate ewes. Clinical examinations for breeding soundness evaluation were carried out in 897 Rasa Aragonesa (RA) rams from 35 flocks in North-Eastern (NE) Spain. Clinical examinations of head, trunk, limbs and genitals were performed in each ram. Blood samples were collected for a serological study of Brucella ovis. The sheep owners were surveyed regarding the characteristics of the flock, rams' health history and the management of rams. The clinical alterations found were classified according to severity (mild or severe). Rams were classified as suitable (without lesions or with only mild lesions) or unsuitable (with severe lesions) for breeding depending on the results of the clinical examinations. The results showed that 60.6 % of rams presented some type of alteration (mild: 43.3 %; severe: 17.3 %) in various body parts (genitalia: 31.6 %; head and trunk: 37.2 %; limbs: 15.5 %), and that 16.7 % of rams were classified as unsuitable breeders. The most common genital alterations were ulcerative posthitis (18.7 %) followed by testicular lesions (5.3 %). The highest prevalence of unsuitable breeders was found in the category of adult and aged rams (13.8 % and 37.4 %, respectively) and in the category of emaciated rams (33.3 %). All rams examined were seronegative to Brucella ovis. The mean percentage of rams in flocks was 2.8 % (min: 1.6 %; max: 4.6 %); nevertheless, this percentage dropped to 2.5 % (min: 1.4 %; max: 3.7 %) and 2.1 % (min: 0.3 %; max: 3.5 %) when only suitable or effective (suitable mature) rams were considered. Thus, it is concluded that there are fewer effective rams in farms than farmers realise. Frequent clinical examination of males is recommended in order to identify potentially infertile rams.

Initial operation and checkout of stratospheric aerosol gas experiment and Meteor-3M satellite

NASA Astrophysics Data System (ADS)

Habib, Shahid; Makridenko, Leonid; Chu, William P.; Salikhov, Rashid; Moore, Alvah S., Jr.; Trepte, Charles R.; Cisewski, Michael S.

2003-04-01

Under a joint agreement between the National Aeronautics and Space Agency (NASA) and the Russian Aviation and Space Agency (RASA), the Stratospheric Aerosol Gas Experiment III (SAGE III) instrument was launched in low earth orbit on December 10, 2001 aboard the Russian Meteor-3M(1) satellite from the Baikonur Cosmodrome. SAGE III is a spectrometer that measures attenuated radiation in the 282 nm to 1550 nm wavelength range to obtain the vertical profiles of ozone, aerosols, and other chemical species that are critical in studying the trends for the global climate change phenomena. This instrument version is more advanced than any of the previous versions and has more spectral bands, elaborate data gathering and storage, and intelligent terrestrial software. There are a number of Russian scientific instruments aboard the Meteor satellite in addition to the SAGE III instrument. These instruments deal with land imaging and biomass changes, hydro-meteorological monitoring, and helio-geophysical research. This mission was under development for over a period of six years and offered a number of unique technical and program management challenges for both Agencies. SAGE III has a long space heritage, and four earlier versions of this instrument have flown in space for nearly two decades now. In fact, SAGE II, the fourth instrument, is still flying in space on NASA's Earth Radiation Budget Satellite (ERBS), and has been providing important atmospheric data over the last 18 years. It has provided vital ozone and aerosol data in the mid latitudes and has contributed vastly in ozone depletion research. Ball Aerospace built the instrument under Langley Research Center's (LaRC) management. This paper presents the process and approach deployed by the SAGE III and the Meteor teams in performing the initial on-orbit checkout. It further documents a number of early science results obtained by deploying low risk, carefully coordinated procedures in resolving the serious operational

A Metallurgical Study of Nāga Bhasma

PubMed Central

Singh Gautam, Dev Nath

2017-01-01

Background: The metal Nāga (Lead) is being used by Indians since ancient times. Its external and internal uses have been described in Caraka, Suśruta and other Ayurvedic Saṃhitā. According to most of the Rasa texts, Nāga Bhasma and its formulations are used in many diseases such as Prameha, Jvara, Gulma, Śukrameha etc. Objectives: In the present study, Nāga Bhasma was prepared by the traditional Puṭa method (TPM) and by the electric muffle furnace Puṭa method (EMFPM) and standardized using Metallographic studies. Doing so helps in the study of the microstructure of Nāga Bhasma and also helps in the identification of the metal particles along with the nature of compound formed during the Māraṇa (Bhasmīkaraṇa) process. Setting and Design: Different samples from initial raw material to final product of Nāga Bhasma were collected during the pharmaceutical process (1st, 30th and 60th Puṭa) from both methods i.e. TPM and EMFPM. Samples from both methods were studied using metallographic examination. Materials and Methods: The processing of the Nāga Bhasma (ṣaṣṭipuṭa) was done according to Ānanda Kanda[9] Samples from the raw material i.e. Aśodhita Nāga (raw Lead) and that processed after 1st, 30th and 60th Puṭa from both methods i.e. traditional Puṭa method (using heat from burning of cow dung cakes) and electric muffle furnace Puṭa method were taken. They were mounted on self hardening acrylic base. After careful polishing to obtain scratch free surface of product, they were used for metallurgical study. Conclusion: This study shows that traditional Puṭa method may be better than electric muffle furnace Puṭa method because of more homogeneous distribution of Lead sulphide in the Nāga Bhasma which is prepared by traditional method. PMID:29269968

In Vivo Effects Of Traditional Ayurvedic Formulations in Drosophila melanogaster Model Relate with Therapeutic Applications

PubMed Central

Dwivedi, Vibha; Anandan, E. M.; Mony, Rajesh S.; Muraleedharan, T. S.; Valiathan, M. S.; Mutsuddi, Mousumi; Lakhotia, Subhash C.

2012-01-01

Background Ayurveda represents the traditional medicine system of India. Since mechanistic details of therapy in terms of current biology are not available in Ayurvedic literature, modern scientific studies are necessary to understand its major concepts and procedures. It is necessary to examine effects of the whole Ayurvedic formulations rather than their “active” components as is done in most current studies. Methods We tested two different categories of formulations, a Rasayana (Amalaki Rasayana or AR, an herbal derivative) and a Bhasma (Rasa-Sindoor or RS, an organo-metallic derivative of mercury), for effects on longevity, development, fecundity, stress-tolerance, and heterogeneous nuclear ribonucleoprotein (hnRNP) levels of Drosophila melanogaster using at least 200 larvae or flies for each assay. Results A 0.5% (weight/volume) supplement of AR or RS affected life-history and other physiological traits in distinct ways. While the size of salivary glands, hnRNP levels in larval tissues, and thermotolerance of larvae/adult flies improved significantly following feeding either of the two formulations, the median life span and starvation resistance improved only with AR. Feeding on AR or RS supplemented food improved fecundity differently. Feeding of larvae and adults with AR increased the fecundity while the same with RS had opposite effect. On the contrary, feeding larvae on normal food and adults on AR supplement had no effect on fecundity but a comparable regime of feeding on RS-supplemented food improved fecundity. RS feeding did not cause heavy metal toxicity. Conclusions The present study with two Ayurvedic formulations reveals formulation-specific effects on several parameters of the fly's life, which seem to generally agree with their recommended human usages in Ayurvedic practices. Thus, Drosophila, with its very rich genetic tools and well-worked-out developmental pathways promises to be a very good model for examining the cellular and molecular

Network-based analysis of comorbidities risk during an infection: SARS and HIV case studies.

PubMed

Moni, Mohammad Ali; Liò, Pietro

2014-10-24

Infections are often associated to comorbidity that increases the risk of medical conditions which can lead to further morbidity and mortality. SARS is a threat which is similar to MERS virus, but the comorbidity is the key aspect to underline their different impacts. One UK doctor says "I'd rather have HIV than diabetes" as life expectancy among diabetes patients is lower than that of HIV. However, HIV has a comorbidity impact on the diabetes. We present a quantitative framework to compare and explore comorbidity between diseases. By using neighbourhood based benchmark and topological methods, we have built comorbidity relationships network based on the OMIM and our identified significant genes. Then based on the gene expression, PPI and signalling pathways data, we investigate the comorbidity association of these 2 infective pathologies with other 7 diseases (heart failure, kidney disorder, breast cancer, neurodegenerative disorders, bone diseases, Type 1 and Type 2 diabetes). Phenotypic association is measured by calculating both the Relative Risk as the quantified measures of comorbidity tendency of two disease pairs and the ϕ-correlation to measure the robustness of the comorbidity associations. The differential gene expression profiling strongly suggests that the response of SARS affected patients seems to be mainly an innate inflammatory response and statistically dysregulates a large number of genes, pathways and PPIs subnetworks in different pathologies such as chronic heart failure (21 genes), breast cancer (16 genes) and bone diseases (11 genes). HIV-1 induces comorbidities relationship with many other diseases, particularly strong correlation with the neurological, cancer, metabolic and immunological diseases. Similar comorbidities risk is observed from the clinical information. Moreover, SARS and HIV infections dysregulate 4 genes (ANXA3, GNS, HIST1H1C, RASA3) and 3 genes (HBA1, TFRC, GHITM) respectively that affect the ageing process. It is notable

Effects of exogenous melatonin on in vivo embryo viability and oocyte competence of undernourished ewes after weaning during the seasonal anestrus.

PubMed

Vázquez, M I; Abecia, J A; Forcada, F; Casao, A

2010-09-01

This study investigated the effects of exogenous melatonin on embryo viability and oocyte competence in post-partum undernourished ewes during the seasonal anestrus. At parturition (mid-Feb), 36 adult Rasa Aragonesa ewes were assigned to one of two groups: treated (+MEL) or not treated (-MEL) with a subcutaneous implant of melatonin (Melovine(R), CEVA) on the day of lambing. After 45 d of suckling, lambs were weaned, ewes were synchronized using intravaginal pessaries, and fed to provide 1.5x (Control, C) or 0.5x (Low, L) times daily maintenance requirements. Thus, ewes were divided into four groups: C-MEL, C+MEL, L-MEL, and L+MEL. At estrus (Day=0), ewes were mated. At Day 5 after estrus, embryos were recovered by mid-ventral laparotomy and classified based on their developmental stage and morphology. After embryo collection, ovaries were recovered and oocytes were classified and selected for use in in vitro fertilization (IVF). Neither diet nor melatonin treatment had a significant effect on ovulation rate and on the number of ova recovered per ewe. Melatonin treatment significantly improved the number of fertilized embryos/corpus luteum (CL) (-MEL: 0.35 +/- 0.1, +MEL: 0.62 +/- 0.1; P = 0.08), number of viable embryos/CL (-MEL: 0.23 +/- 0.1, +MEL: 0.62 +/- 0.1; P < 0.01), viability rate (-MEL: 46.6%, +MEL: 83.9%; P < 0.05), and pregnancy rate (-MEL: 26.3%, +MEL: 76.5%; P < 0.05). In particular, exogenous melatonin improved embryo viability in undernourished ewes (L-MEL: 40%, L+MEL: 100%, P < 0.01). Neither nutrition nor exogenous melatonin treatments significantly influenced the competence of oocytes during IVF. Treatment groups did not differ significantly in the number of healthy oocytes used for IVF, number of cleaved embryos, or number of blastocysts and, consequently, the groups had similar cleavage and blastocyst rates. In conclusion, melatonin treatments improved ovine embryo viability during anestrus, particularly in undernourished post-partum ewes

Developing and implementing a service charter for an integrated regional stroke service: an exploratory case study

PubMed Central

2014-01-01

Background Based on practices in commercial organizations and public services, healthcare organizations are using service charters to inform patients about the quality of service they can expect and to increase patient-centeredness. In the Netherlands, an integrated regional stroke service involving five organizations has developed and implemented a single service charter. The purpose of this study is to determine the organizational enablers for the effective development and implementation of this service charter. Methods We have conducted an exploratory qualitative study using Grounded Theory to determine the organizational enablers of charter development and implementation. Individual semi-structured interviews were held with all members of the steering committee and the taskforce responsible for the service charter. In these twelve interviews, participants were retrospectively asked for their opinions of the enablers. Interview transcripts have been analysed using Glaser’s approach of substantive coding consisting of open and selective coding in order to develop a framework of these enablers. A tabula rasa approach was used without any preconceived frameworks used in the coding process. Results We have determined seven categories of enablers formed of a total of 27 properties. The categories address a broad spectrum of enablers dealing with the basic foundations for cooperation, the way to manage the project’s organization and the way to implement the service charter. In addition to the enablers within each individual organization, enablers that reflect the whole chain seem to be important for the effective development and implementation of this service charter. Strategic alignment of goals within the chain, trust between organizations, willingness to cooperate and the extent of process integration are all important properties. Conclusions This first exploratory study into the enablers of the effective development and implementation was based on a single

Identification of key regulators of pancreatic cancer progression through multidimensional systems-level analysis.

PubMed

Rajamani, Deepa; Bhasin, Manoj K

2016-05-03

Pancreatic cancer is an aggressive cancer with dismal prognosis, urgently necessitating better biomarkers to improve therapeutic options and early diagnosis. Traditional approaches of biomarker detection that consider only one aspect of the biological continuum like gene expression alone are limited in their scope and lack robustness in identifying the key regulators of the disease. We have adopted a multidimensional approach involving the cross-talk between the omics spaces to identify key regulators of disease progression. Multidimensional domain-specific disease signatures were obtained using rank-based meta-analysis of individual omics profiles (mRNA, miRNA, DNA methylation) related to pancreatic ductal adenocarcinoma (PDAC). These domain-specific PDAC signatures were integrated to identify genes that were affected across multiple dimensions of omics space in PDAC (genes under multiple regulatory controls, GMCs). To further pin down the regulators of PDAC pathophysiology, a systems-level network was generated from knowledge-based interaction information applied to the above identified GMCs. Key regulators were identified from the GMC network based on network statistics and their functional importance was validated using gene set enrichment analysis and survival analysis. Rank-based meta-analysis identified 5391 genes, 109 miRNAs and 2081 methylation-sites significantly differentially expressed in PDAC (false discovery rate ≤ 0.05). Bimodal integration of meta-analysis signatures revealed 1150 and 715 genes regulated by miRNAs and methylation, respectively. Further analysis identified 189 altered genes that are commonly regulated by miRNA and methylation, hence considered GMCs. Systems-level analysis of the scale-free GMCs network identified eight potential key regulator hubs, namely E2F3, HMGA2, RASA1, IRS1, NUAK1, ACTN1, SKI and DLL1, associated with important pathways driving cancer progression. Survival analysis on individual key regulators revealed

Spatial variability of soil carbon, pH, available phosphorous and potassium in organic farm located in Mediterranean Croatia

NASA Astrophysics Data System (ADS)

Bogunović, Igor; Pereira, Paulo; Šeput, Miranda

2016-04-01

Soil organic carbon (SOC), pH, available phosphorus (P), and potassium (K) are some of the most important factors to soil fertility. These soil parameters are highly variable in space and time, with implications to crop production. The aim of this work is study the spatial variability of SOC, pH, P and K in an organic farm located in river Rasa valley (Croatia). A regular grid (100 x 100 m) was designed and 182 samples were collected on Silty Clay Loam soil. P, K and SOC showed moderate heterogeneity with coefficient of variation (CV) of 21.6%, 32.8% and 51.9%, respectively. Soil pH record low spatial variability with CV of 1.5%. Soil pH, P and SOC did not follow normal distribution. Only after a Box-Cox transformation, data respected the normality requirements. Directional exponential models were the best fitted and used to describe spatial autocorrelation. Soil pH, P and SOC showed strong spatial dependence with nugget to sill ratio with 13.78%, 0.00% and 20.29%, respectively. Only K recorded moderate spatial dependence. Semivariogram ranges indicate that future sampling interval could be 150 - 200 m in order to reduce sampling costs. Fourteen different interpolation models for mapping soil properties were tested. The method with lowest Root Mean Square Error was the most appropriated to map the variable. The results showed that radial basis function models (Spline with Tension and Completely Regularized Spline) for P and K were the best predictors, while Thin Plate Spline and inverse distance weighting models were the least accurate. The best interpolator for pH and SOC was the local polynomial with the power of 1, while the least accurate were Thin Plate Spline. According to soil nutrient maps investigated area record very rich supply with K while P supply was insufficient on largest part of area. Soil pH maps showed mostly neutral reaction while individual parts of alkaline soil indicate the possibility of penetration of seawater and salt accumulation in the

Espectroscopía de Microondas en Jets Supersónicos

NASA Astrophysics Data System (ADS)

Alonso, J. L.; López, J. C.; Lesarri, A.; Blanco, S.; Sanz, M. E.; Mata, S.; Cocinero, J. E.; Sánchez, R.

Complejos con Enlace de Hidrógeno. El entorno de bajas temperaturas de una expansión supersónica es un excelente laboratorio para estudiar el comportamiento conformacional de los complejos con enlace de hidrógeno. Nuestro grupo ha observado por vez primera enlaces de hidrógeno axial y ecuatorial en los complejos de tetrahidropirano, sulfuro de pentametileno y sulfuro de trimetileno con HCl y HF [1-6] generados en las expansiones adiabáticas en He, Ne o Ar y caracterizados por espectroscopía de microondas con transformadas de Fouier. Existe controversia a la hora de considerar a las interacciones C-H\\cdotsO como enlaces de hidrógeno o como simples interacciones de van der Waals. Las interacciones C-H\\cdotsO han sido estudiadas en el dímero del dimetil eter generado en la expansión supersónica y caracterizado por espectroscopía de microondas [7]. Estas interacciones se han analizado en los complejos formados entre los alcanos sustituidos del trifluorometano y difluorometano con oxirano [8] caracterizándose la existencia de interacciones C-F\\cdotsH-C que contribuyen a la estabilización de estos complejos. Ablación Láser: Estructura de Aminoácidos. Los aminoácidos poseen puntos de fusión elevados (>200oC) y se presentan en fases condensadas como formas dipolares (+H3N-CH(R)-COO-) distintas de las neutras de las cadenas polipéptidas. Con el fin de obtener la estructura de estas formas neutras es necesario experimentar en fase gas, en un entorno libre de interacciones como el de una expansión supersónica. Para solventar el problema de su baja presión de vapor, se ha diseñado un nuevo instrumento que combina la espectroscopía de microondas en jet supersónicos con técnicas de ablación láser [9] que evita los métodos de vaporización por calentamiento que conducen a la descomposición de los aminoácidos. Diversos confórmeros de los aminoácidos naturales de la prolina [10], valina [11], cis- y trans- hidroxiprolina, serina, cisteina, ldots

Groundwater availability of the Central Valley Aquifer, California

USGS Publications Warehouse

Faunt, Claudia C.

2009-01-01

California's Central Valley covers about 20,000 square miles and is one of the most productive agricultural regions in the world. More than 250 different crops are grown in the Central Valley with an estimated value of $17 billion per year. This irrigated agriculture relies heavily on surface-water diversions and groundwater pumpage. Approximately one-sixth of the Nation's irrigated land is in the Central Valley, and about one-fifth of the Nation's groundwater demand is supplied from its aquifers. The Central Valley also is rapidly becoming an important area for California's expanding urban population. Since 1980, the population of the Central Valley has nearly doubled from 2 million to 3.8 million people. The Census Bureau projects that the Central Valley's population will increase to 6 million people by 2020. This surge in population has increased the competition for water resources within the Central Valley and statewide, which likely will be exacerbated by anticipated reductions in deliveries of Colorado River water to southern California. In response to this competition for water, a number of water-related issues have gained prominence: conservation of agricultural land, conjunctive use, artificial recharge, hydrologic implications of land-use change, and effects of climate variability. To provide information to stakeholders addressing these issues, the USGS Groundwater Resources Program made a detailed assessment of groundwater availability of the Central Valley aquifer system, that includes: (1) the present status of groundwater resources; (2) how these resources have changed over time; and (3) tools to assess system responses to stresses from future human uses and climate variability and change. This effort builds on previous investigations, such as the USGS Central Valley Regional Aquifer System and Analysis (CV-RASA) project and several other groundwater studies in the Valley completed by Federal, State and local agencies at differing scales. The

Estimate of ground water in storage in the Great Lakes basin, United States, 2006

USGS Publications Warehouse

Coon, William F.; Sheets, Rodney A.

2006-01-01

Hydrogeologic data from Regional Aquifer System Analyses (RASA) studies by the U.S. Geological Survey in the Great Lakes Basin, United States, during 1978-95, were compiled and used to estimate the total volume of water that is stored in the many aquifers of the basin. These studies focused on six regional aquifer systems: the Cambrian-Ordovician aquifer system in Wisconsin, Illinois, and Indiana; the Silurian- Devonian aquifers in Wisconsin, Michigan, Illinois, Indiana, and Ohio; the surficial aquifer system (aquifers of alluvial and glacial origin) found throughout the Great Lakes Basin; and the Pennsylvanian sandstone and carbonate-rock aquifers and the Mississippian sandstone aquifer in Michigan. Except for the surficial aquifers, all of these aquifer systems are capable of yielding substantial quantities of water and are not small aquifers with only local importance. Individual surficial aquifers, although small in comparison to the bedrock aquifers, collectively represent large potential sources of ground water and therefore have been treated as a regional system. Summation of ground-water volumes in the many regional aquifers of the basin indicates that about 1,340 cubic miles of water is in storage; of this, about 984 cubic miles is considered freshwater (that is, water with dissolved-solids concentration less than 1,000 mg/L). These volumes should not be interpreted as available in their entirety to meet water-supply needs; complete dewatering of any aquifer is environmentally undesirable. The amount of water that is considered available on the basis of water quality and environmental, economic, and legal constraints has not been determined. The effect of heavy pumping in the Chicago, Ill., and Milwaukee, Wis., areas, which has caused the regional ground-water divide in the Cambrian-Ordovician aquifer system to shift westward, has been included in the above estimates. This shift in the ground-water divide has increased the amount of water in storage in the

Processes forcing the suspended sediments distribution in a wide, shallow and microtidal estuary: a numerical case study for the Río de la Plata

NASA Astrophysics Data System (ADS)

Simionato, Claudia; Moreira, Diego

2017-04-01

The impact of the diverse mechanisms driving the suspended sediments distribution in the wide, shallow and microtidal Río de la Plata (RdP) estuary and the adjacent shelf is studied by means of a set of process-oriented numerical simulations. With that aim, a regional application of the hydro-sedimentological Model for Applications at Regional Scale (MARS) is implemented, tested and run under diverse conditions. Even the simulations are idealized, they reproduce both qualitatively and quantitatively well the main features of the suspended sediments observed distribution, particularly the mean values of concentration and its gradients: perpendicular to the estuary axis at the upper and intermediate RdP and parallel to the estuary axis at its outer part. Even though naturally the diameter of the sediments that deposit decays with the distance to the sources (with sands and silts dominating in the upper estuary and fine silts and clays over the Barra del Indio), model results show that the large width and the geometry of the estuary play an important role in the sedimentation process. The widening and deepening, and the associated significant reduction of the currents speed that occurs after (i) the confluence of the tributaries and (ii) downstream the Barra del Indio Shoal, favors sediments deposition downstream those areas. Even though tides are of small amplitude in the study area, they have a significant impact on the lateral mixing and the re-suspension of bottom sediments; this last augments the concentration of fine sediments in the layers close to the bottom but their energy is not enough to rise them up to the surface. The model reproduces the increment in the concentration of fine sediments observed in the areas where tidal dissipation energy by bottom friction maximizes (over the southern coast of the RdP and around Punta Piedras and Punta Rasa), but shows that tides alone cannot account for the observed maxima. Winds (which can be quite large over this

Evolution of cyclin-dependent kinases (CDKs) and CDK-activating kinases (CAKs): differential conservation of CAKs in yeast and metazoa.

PubMed

Liu, J; Kipreos, E T

2000-07-01

Cyclin-dependent kinases (CDKs) function as central regulators of both the cell cycle and transcription. CDK activation depends on phosphorylation by a CDK-activating kinase (CAK). Different CAKs have been identified in budding yeast, fission yeast, and metazoans. All known CAKs belong to the extended CDK family. The sole budding yeast CAK, CAK1, and one of the two CAKs in fission yeast, csk1, have diverged considerably from other CDKs. Cell cycle regulatory components have been largely conserved in eukaryotes; however, orthologs of neither CAK1 nor csk1 have been identified in other species to date. To determine the evolutionary relationships of yeast and metazoan CAKs, we performed a phylogenetic analysis of the extended CDK family in budding yeast, fission yeast, humans, the fruit fly Drosophila melanogaster, and the nematode Caenorhabditis elegans. We observed that there were 10 clades for CDK-related genes, of which seven appeared ancestral, containing both yeast and metazoan genes. The four clades that contain CDKs that regulate transcription by phosphorylating the carboxyl-terminal domain (CTD) of RNA Polymerase II generally have only a single orthologous gene in each species of yeast and metazoans. In contrast, the ancestral cell cycle CDK (analogous to budding yeast CDC28) gave rise to a number of genes in metazoans, as did the ancestor of budding yeast PHO85. One ancestral clade is unique in that there are fission yeast and metazoan members, but there is no budding yeast ortholog, suggesting that it was lost subsequent to evolutionary divergence. Interestingly, CAK1 and csk1 branch together with high bootstrap support values. We used both the relative apparent synapomorphy analysis (RASA) method in combination with the S-F method of sampling reduced character sets and gamma-corrected distance methods to confirm that the CAK1/csk1 association was not an artifact of long-branch attraction. This result suggests that CAK1 and csk1 are orthologs and that a

Antimicrobial potential of two traditional herbometallic drugs against certain pathogenic microbial species.

PubMed

Wijenayake, A U; Abayasekara, C L; Pitawala, H M T G A; Bandara, B M R

2016-09-15

Mineral based preparations are widely used for centuries as antimicrobial agents. However, the efficacy and the mode of action of mineral based preparations are uncertain due to the insufficient antimicrobial studies. Arogyawardhana Vati (AV) and Manikya Rasa (MR) are such two Rasashastra herbo-minerallic drugs commonly in India and other countries in South Asia. Despite of their well known traditional use of skin diseases, reported antimicrobial and mineralogical studies are limited. Therefore, in this study antimicrobial activities of the drugs and their organic, inorganic fractions were evaluated against Pseudomonas aeruginosa, Escherischia coli, Staphylococcus aureus, Methecilline Resistance Staphylococcus aureus - MRSA and Candida albicans. Antimicrobial activity of the drugs, their inorganic residues and organic extracts were determined using four assay techniques viz agar well diffusion, modified well diffusion, Miles and Misra viable cell counting and broth turbidity measurements. Mineralogical constituents of the drugs were determined using X-ray diffraction, while total cation constituents and water soluble cation constituents were determined using inductively coupled plasma-mass spectrometer and the atomic absorption spectrophotometer respectively. Thermogravimetric analysis was used to determine the weight percentages of organic and inorganic fraction of the drugs. Particle sizes of the drugs were determined using the particle size analyzer. AV and MR drugs showed antibacterial activity against both gram positive and gram negative bacterial species when analyzed separately. Inorganic residues of the drugs and organic extracts showed activity at least against two or more bacterial species tested. All tested components were inactive against C. albicans. Common mineral constituents of drugs are cinnabar, biotite and Fe-rich phases. Drugs were rich in essential elements such as Na, K, Ca, Mg and Fe and toxic elements such as Zn, Cu and As. However, the

Selected test-well data from the MX-missile siting study, Tooele, Juab, Millard, Beaver, and Iron counties, Utah

USGS Publications Warehouse

Mason, James L.; Atwood, John W.; Buettner, Priscilla S.

1985-01-01

This report contains well data collected from 1979 to 1983 in a part of the Great Basin in western Utah (fig. 1). The area is characterized by a series of generally north-trending mountain ranges separated by alluviumfilled basins that are partially filled with sedimentary deposits eroded from the adjacent mountains and lacustrine sediments deposited by Lake Bonneville. Most of the intermountain basins are elongated in the northward direction, but some are almost equidimensional.This report was prepared as part of the Great Basin Regional AquiferSystem Analysis (RASA) program. The report is intended to make well data from the MX-missile siting study readily available to water-resource managers and the general public. It includes well data obtained in areas for which little or no such data have been published previously. Well-drilling and well-completion data were compiled by Ertec, Inc. (formerly Fugro National, Inc.) under contract with the U. S. Air Force. Those data along with aquifer test data, geophysical logs, and drillers1 or geologists1 logs were obtained from Ertec, Inc. under an agreement with the U.S. Air Force. The authors thank the officials of both Ertec, Inc. and the U.S. Air Force for their helpful cooperation. The U.S. Geological Survey obtained accurate locations of the test wells (pi. 1) and accurate water-level measurements in those wells (table 1). Chemical analyses of water samples collected from several of the test wells drilled in the Sevier Desert have been published in a report by Enright and Holmes (1982, table 5).Test drilling for the MX-missile siting study consisted of two parts, the verification phase and the water-resources phase. The verification jhase was designed to obtain information necessary for the design and construction of the MX-basing system. Numerous small diameter wells were bored with depths ranging from 92 to 205 feet. Two-inch diameter JVC casing with the bottom 20 feet perforated was installed in each borehole. The

Persistent efficacy of a long acting injectable formulation of moxidectin against natural infestations of the sheep nasal bot (Oestrus ovis) in Spain.

PubMed

Rugg, Douglas; Ferrer, Luis Miguel; Sarasola, Patxi; Figueras, Luis; Lacasta, Delia; Liu, Bo; Bartram, David

2012-09-10

Cydectin(®) 2% LA Solution for Injection for Sheep (Pfizer Animal Health) is a long-acting (LA) formulation of moxidectin for the treatment and prevention of mixed infections of gastro-intestinal nematodes, respiratory nematodes and certain arthropod parasites in sheep. To evaluate the duration of persistent efficacy against nasal bots (Oestrus ovis), a natural exposure study was conducted in Spain during the summer of 2011. One hundred and twenty nasal bot-free, Rasa Aragonesa sheep were randomly allocated to eight groups of 15 animals each. On Day 0, four groups were treated at the recommended dose rate of 1 mg moxidectin/kg bodyweight. Four groups remained untreated as negative controls. All animals were held in nasal bot-proof housing except for exposure to natural challenge when one group of treated sheep and one of group of control animals were transferred to a local pasture at either 0-20, 20-40, 40-60, or 60-80 days after treatment. Following challenge, sheep were scored for clinical signs of bot infestation, necropsied and the heads sectioned for larval recovery. Nasal bot larvae were retrieved from 7 to 11 control sheep following each exposure period indicating that adult bots were active throughout the study. In the first challenge up to 20 days after treatment, when sheep were slaughtered immediately after exposure, the majority of larvae were first instar (L1) and only 3 of the 15 control sheep were infested with second instars (L2). There was 100% efficacy against L2 and 38.1% reduction in the number of live L1 in the treated sheep but mean counts were not significantly different between treatment and control groups (P ≥ 0.05). For the subsequent exposure periods 20-80 days after treatment (necropsies 7-9 days after challenge), 6-10 sheep were infested with L1 and 9-11 control sheep were infested with L2 and third instars (L3). There was negligible efficacy against L1, but treatment with moxidectin resulted in 100% control of L2 and L3. These

Impact of Environmental Factors on Differences in Quality of Medication Use: An Insight for the Medicare Star Rating System.

PubMed

Desai, Vibha; Nau, David; Conklin, Mark; Heaton, Pamela C

2016-07-01

The Medicare star ratings system incentivizes health plan sponsors based on their performance across a measurement system that contains quality measures related to medication use. As health plan sponsors seek to further engage their network providers, specifically network pharmacies, to improve performance on these measures, it is important to consider the effect of environmental factors on the performance of network pharmacies. To determine the effect of environmental factors on pharmacy quality as measured by (a) medication adherence for noninsulin diabetes medications, (b) medication adherence for renin angiotensin receptor antagonists (RASA), (c) medication adherence for cholesterol medications (statins), and (d) use of high-risk medications (HRM) in the elderly. The EQuIPP database, which contains performance information for pharmacies for a nationwide sample of Medicare beneficiaries, was used for this analysis. Environmental factors included regions or characteristics of a community or county. County-level data was obtained from the Area Health Resource Files, a resource product available from the Health Resources & Service Administration. A logistic regression model was developed with performance as the dependent variable and regions and environmental factors as independent variables. Performance and county characteristics, such as proportion of patients in an age group, race, income, or number of outpatient visits, were classified as high and low based on a median cutoff of nationwide performance scores. A total of 28,950 pharmacies were included in this analysis. For most measures, the proportion of low-performing pharmacies was significantly higher in the East South Central, Mid-Atlantic, Mountain, Pacific, and West South Central regions. Pharmacies in counties with high median income, high proportion of elderly population (aged > 84 years), high proportion of elderly patients who were white or Hispanic, high proportion of elderly males, and high

Recovery of Ground-Water Levels From 1988 to 2003 and Analysis of Potential Water-Supply Management Options in Critical Area 1, East-Central New Jersey

USGS Publications Warehouse

Spitz, Frederick J.; Watt, Martha K.; dePaul, Vincent T.

2008-01-01

Water levels in four confined aquifers in the New Jersey Coastal Plain within Water Supply Critical Area 1 have recovered as a result of reductions in ground-water withdrawals initiated by the State in the late 1980s. The aquifers are the Wenonah-Mount Laurel, the Upper and Middle Potomac-Raritan-Magothy, and Englishtown aquifer system. Because of increased water demand due to increased development in Monmouth, Ocean, and Middlesex Counties, five base and nine alternate management models were designed for the four aquifers to evaluate the effects resulting from potential reallocation of part of the Critical Area 1 reductions in withdrawals. The change in withdrawals and associated water-level changes in the aquifers for 1988-2003 are discussed. Generally, withdrawals decreased 25 to 30 Mgal/d (million gallons per day), and water levels increased 0 to 80 ft (feet). The Regional Aquifer-System Analysis (RASA) ground-water-flow model of the New Jersey Coastal Plain developed by the U.S. Geological Survey was used to simulate ground-water flow and optimize withdrawals using the Ground-Water Management Process (GWM) for MODFLOW. Results of the model were used to evaluate the effects of several possible water-supply management options in order to provide the information to water managers. The optimization method, which provides a means to set constraints that support mandated hydrologic conditions, then determine the maximum withdrawals that meet the constraints, is a more cost-effective approach than simulating a range of withdrawals to determine the effects on the aquifer system. The optimization method is particularly beneficial for a regional-scale study of this kind because of the large number of wells to be evaluated. Before the model was run, a buffer analysis was done to define an area with no additional withdrawals that minimizes changes in simulated streamflow in aquifer outcrop areas and simulated movement of ground water toward the wells from areas of

Geology and hydrogeology of the Caribbean islands aquifer system of the Commonwealth of Puerto Rico and the U.S. Virgin Islands

USGS Publications Warehouse

Renken, Robert A.; Ward, W. C.; Gill, I.P.; Gómez-Gómez, Fernando; Rodríguez-Martínez, Jesús; ,

2002-01-01

Poorly lithified to unconsolidated carbonate and clastic sedimentary rocks of Tertiary (Oligocene to Pliocene) and Quaternary (Pleistocene to Holocene) age compose the South Coast aquifer and the North Coast limestone aquifer system of Puerto Rico; poorly lithified to unlithified carbonate rocks of late Tertiary (early Miocene to Pliocene) age make up the Kingshill aquifer of St. Croix, U.S. Virgin Islands. The South Coast aquifer, North Coast limestone aquifer system, and Kingshill aquifer are the most areally extensive and function as the major sources of ground water in the U.S. Caribbean Islands Regional Aquifer-System Analysis (CI-RASA) study area. In Puerto Rico's South Coast ground-water province, more than 1,000 meters of clastic and carbonate rocks of Oligocene to Pliocene age infill the South Coast Tertiary Basin. The pattern of lithofacies within this basin appears to have been controlled by changes in base level that were, at times, dominated by tectonic movement (uplift and subsidence), but were also influenced by eustasy. Deposition of the 70-kilometer long and 3- to 8-kilometer wide fan-delta plain that covers much of the South Coast ground-water province occurred largely in response to glacially-induced changes in sea level and climate during the Quaternary period. Tectonic movement played a much less important role during the Quaternary. The North Coast ground-water province of Puerto Rico is underlain by homoclinal coastal plain wedge of carbonate and siliciclastic rocks that infill the North Coast Tertiary Basin and thicken to more than 1,700 meters. A thin basal siliciclastic sequence of late Oligocene age is overlain by a thick section of mostly carbonate rocks of Oligocene to middle Miocene age. Globigerinid limestone of late Miocene to Pliocene age crops out and lies in the shallow subsurface areas of northwestern Puerto Rico. Oligocene to middle Miocene age rocks tentatively can be divided into five depositional sequences and associated

Hydrologic properties and ground-water flow systems of the Paleozoic rocks in the upper Colorado River basin in Arizona, Colorado, New Mexico, Utah, and Wyoming, excluding the San Juan Basin

USGS Publications Warehouse

Geldon, Arthur L.

2003-01-01

The hydrologic properties and ground-water flow systems of Paleozoic sedimentary rocks in the Upper Colorado River Basin were investigated under the Regional Aquifer-System Analysis (RASA) program of the U.S. Geological Survey in anticipation of the development of water supplies from bedrock aquifers to fulfill the region's growing water demands. The study area, in parts of Arizona, Colorado, New Mexico, Utah, and Wyoming, covers about 100,000 square miles. It includes parts of four physiographic provinces--the Middle Rocky Mountains, Wyoming Basin, Southern Rocky Mountains, and Colorado Plateaus. A variety of landforms, including mountains, plateaus, mesas, cuestas, plains, badlands, and canyons, are present. Altitudes range from 3,100 to 14,500 feet. Precipitation is distributed orographically and ranges from less than 6 inches per year at lower altitudes to more than 60 inches per year in some mountainous areas. Most of the infrequent precipitation at altitudes of less than 6,000 feet is consumed by evapotranspiration. The Colorado and Green Rivers are the principal streams: the 1964-82 average discharge of the Colorado River where it leaves the Upper Colorado River Basin is 12,170 cubic feet per second (a decrease of 5,680 cubic feet per second since construction of Glen Canyon Dam in 1963). On the basis of their predominant lithologic and hydrologic properties, the Paleozoic rocks are classified into four aquifers and three confining units. The Flathead aquifer, Gros Ventre confining unit, Bighorn aquifer, Elbert-Parting confining unit, and Madison aquifer (Redwall-Leadville and Darwin-Humbug zones) make up the Four Corners aquifer system. A thick sequence, composed mostly of Mississippian and Pennsylvanian shale, anhydrite, halite, and carbonate rocks--the Four Corners confining unit (Belden-Molas and Paradox-Eagle Valley subunits)--overlies the Four Corners aquifer system in most areas and inhibits vertical ground-water flow between the Four Corners aquifer

Simulated Effects of Projected 2010 Withdrawals on Ground-Water Flow and Water Levels in the New Jersey Coastal Plain - A Task of the New Jersey Water Supply Plan, 2006 Revision

USGS Publications Warehouse

Gordon, Alison D.

2007-01-01

A ground-water flow model previously developed as part of a Regional Aquifer System Analysis (RASA) of the New Jersey Coastal Plain was used to simulate ground-water flow in eight major confined aquifers to help evaluate ground-water resources in support of the New Jersey Department of Environmental Protection's revision of the New Jersey State Water Supply Plan. This model was calibrated to 1998 steady-state and transient conditions. Withdrawals at wells in operation in 1998 were varied in three scenarios to evaluate their effects on flow directions, water levels, and water budgets in the confined aquifers. The scenarios used to predict changes in pumpage from 1998 to 2010 were based on (1) a continuation of 1990-99 trends in water use, (2) public-supply withdrawals estimated from county population projections, and (3) restricted withdrawals in Water-Supply Critical Areas. Total withdrawals in these three scenarios were approximately 366, 362, and 355 million gallons per day, respectively. The results of these simulations are used by New Jersey water-management officials to help address water-supply concerns for the State. In the revision of the New Jersey State Water Supply Plan, the eight major confined aquifers of the New Jersey Coastal Plain and their outcrop areas are divided into 41 hydrologic budget areas (HBAs). Simulation results were used to assess the effects of changing ground-water withdrawals on water levels and the flow budgets in each budget area. Simulation results for each scenario were compared with 1998 (baseline) simulated water levels and flow budgets. The 41 hydrologic budget areas are in areas of large ground-water withdrawals, water-level declines, and (or) saltwater-intrusion potential. Their boundaries are based on various hydrologic, geohydrologic, and withdrawal conditions, such as aquifer extent, location of the 250-milligram-per-liter isochlor, aquifer outcrop area, and ground-water divides. The budget areas include primarily the