Aroma types of flue-cured tobacco in China: spatial distribution and association with climatic factors

NASA Astrophysics Data System (ADS)

Yang, Chao; Wu, Wei; Wu, Shu-Cheng; Liu, Hong-Bin; Peng, Qing

2014-02-01

Aroma types of flue-cured tobacco (FCT) are classified into light, medium, and heavy in China. However, the spatial distribution of FCT aroma types and the relationships among aroma types, chemical parameters, and climatic variables were still unknown at national scale. In the current study, multi-year averaged chemical parameters (total sugars, reducing sugars, nicotine, total nitrogen, chloride, and K2O) of FCT samples with grade of C3F and climatic variables (mean, minimum and maximum temperatures, rainfall, relative humidity, and sunshine hours) during the growth periods were collected from main planting areas across China. Significant relationships were found between chemical parameters and climatic variables ( p < 0.05). A spatial distribution map of FCT aroma types were produced using support vector machine algorithms and chemical parameters. Significant differences in chemical parameters and climatic variables were observed among the three aroma types based on one-way analysis of variance ( p < 0.05). Areas with light aroma type had significantly lower values of mean, maximum, and minimum temperatures than regions with medium and heavy aroma types ( p < 0.05). Areas with heavy aroma type had significantly lower values of rainfall and relative humidity and higher values of sunshine hours than regions with light and medium aroma types ( p < 0.05). The output produced by classification and regression trees showed that sunshine hours, rainfall, and maximum temperature were the most important factors affecting FCT aroma types at national scale.

Mid-Western US heavy summer-precipitation in regional and global climate models: the impact on model skill and consensus through an analogue lens

NASA Astrophysics Data System (ADS)

Gao, Xiang; Schlosser, C. Adam

2018-04-01

Regional climate models (RCMs) can simulate heavy precipitation more accurately than general circulation models (GCMs) through more realistic representation of topography and mesoscale processes. Analogue methods of downscaling, which identify the large-scale atmospheric conditions associated with heavy precipitation, can also produce more accurate and precise heavy precipitation frequency in GCMs than the simulated precipitation. In this study, we examine the performances of the analogue method versus direct simulation, when applied to RCM and GCM simulations, in detecting present-day and future changes in summer (JJA) heavy precipitation over the Midwestern United States. We find analogue methods are comparable to MERRA-2 and its bias-corrected precipitation in characterizing the occurrence and interannual variations of observed heavy precipitation events, all significantly improving upon MERRA precipitation. For the late twentieth-century heavy precipitation frequency, RCM precipitation improves upon the corresponding driving GCM with greater accuracy yet comparable inter-model discrepancies, while both RCM- and GCM-based analogue results outperform their model-simulated precipitation counterparts in terms of accuracy and model consensus. For the projected trends in heavy precipitation frequency through the mid twenty-first century, analogue method also manifests its superiority to direct simulation with reduced intermodel disparities, while the RCM-based analogue and simulated precipitation do not demonstrate a salient improvement (in model consensus) over the GCM-based assessment. However, a number of caveats preclude any overall judgement, and further work—over any region of interest—should include a larger sample of GCMs and RCMs as well as ensemble simulations to comprehensively account for internal variability.

The generation and selection of single-domain, v region libraries from nurse sharks.

PubMed

Flajnik, Martin F; Dooley, Helen

2009-01-01

The cartilaginous fish (sharks, skates, and rays) are the oldest phylogenetic group in which a human-type adaptive immune system and immunoglobulins (Igs) have been found. In addition to their conventional (heavy-light chain heterodimeric) isotypes, IgM and IgW, sharks produce the novel isotype, IgNAR, a heavy chain homodimer that does not associate with light chains. Instead, its variable (V) regions act as independent, soluble units in order to bind antigen. In this chapter, we detail our immunization protocol in order to raise a humoral IgNAR response in the nurse shark (Ginglymostoma cirratum) and the subsequent cloning of the single-domain V regions from this isotype in order to select antigen-specific binders by phage display.

Asymptotic 3-loop heavy flavor corrections to the charged current structure functions FLW+-W-(x ,Q2) and F2W+-W-(x ,Q2)

NASA Astrophysics Data System (ADS)

Behring, A.; Blümlein, J.; Falcioni, G.; De Freitas, A.; von Manteuffel, A.; Schneider, C.

2016-12-01

We derive the massive Wilson coefficients for the heavy flavor contributions to the nonsinglet charged current deep-inelastic scattering structure functions FLW+(x ,Q2)-FLW-(x ,Q2) and F2W+(x ,Q2)-F2W-(x ,Q2) in the asymptotic region Q2≫m2 to 3-loop order in quantum chromodynamics at general values of the Mellin variable N and the momentum fraction x . Besides the heavy quark pair production, also the single heavy flavor excitation s →c contributes. Numerical results are presented for the charm quark contributions, and consequences on the unpolarized Bjorken sum rule and Adler sum rule are discussed.

Somatic diversification in the heavy chain variable region genes expressed by human autoantibodies bearing a lupus-associated nephritogenic anti-DNA idiotype

DOE Office of Scientific and Technical Information (OSTI.GOV)

Demaison, C.; Chastagner, P.; Theze, J.

1994-01-18

Monoclonal anti-DNA antibodies bearing a lupus nephritis-associated idiotype were derived from five patients with systemic lupus erythematosus (SLE). Genes encoding their heavy (H)-chain variable (V[sub H]) regions were cloned and sequenced. When compared with their closest V[sub h] germ-line gene relatives, these sequences exhibit a number of silent (S) and replacement (R) substitutions. The ratios of R/S mutations were much higher in the complementarity-determining regions (CDRs) of the antibodies than in the framework regions. Molecular amplification of genomic V[sub H] genes and Southern hybridization with somatic CDR2-specific oligonucleotide probes showed that the configuration of the V[sub H] genes corresponding tomore » V[sub H] sequences in the nephritogenic antibodies is not present in the patient's own germ-line DNA, implying that the B-cell clones underwent somatic mutation in vivo. These findings, together with the characteristics of the diversity and junctional gene elements utilized to form the antibody, indicate that these autoantibodies have been driven through somatic selection processes reminiscent of those that govern antibody responses triggered by exogenous stimuli.« less

Altered phenotypic expression of immunoglobulin heavy-chain variable-region (VH) genes in Alicia rabbits probably reflects a small deletion in the VH genes closest to the joining region.

PubMed

Allegrucci, M; Newman, B A; Young-Cooper, G O; Alexander, C B; Meier, D; Kelus, A S; Mage, R G

1990-07-01

Rabbits of the Alicia strain have a mutation (ali) that segregates with the immunoglobulin heavy-chain (lgh) locus and has a cis effect upon the expression of heavy-chain variable-region (VH) genes encoding the a2 allotype. In heterozygous a1/ali or a3/ali rabbits, serum immunoglobulins are almost entirely the products of the normal a1 or a3 allele and only traces of a2 immunoglobulin are detectable. Adult homozygous ali/ali rabbits likewise have normal immunoglobulin levels resulting from increased production of a-negative immunoglobulins and some residual ability to produce the a2 allotype. By contrast, the majority of the immunoglobulins of wild-type a2 rabbits are a2-positive and only a small percentage are a-negative. Genomic DNAs from homozygous mutant and wild-type animals were indistinguishable by Southern analyses using a variety of restriction enzyme digests and lgh probes. However, when digests with infrequently cutting enzymes were analyzed by transverse alternating-field electrophoresis, the ali DNA fragments were 10-15 kilobases smaller than the wild type. These fragments hybridized to probes both for VH and for a region of DNA a few kilobases downstream of the VH genes nearest the joining region. We suggest that this relatively small deletion affects a segment containing 3' VH genes with important regulatory functions, the loss of which leads to the ali phenotype. These results, and the fact that the 3' VH genes rearrange early in B-cell development, indicate that the 3' end of the VH locus probably plays a key role in regulation of VH gene expression.

Altered phenotypic expression of immunoglobulin heavy-chain variable-region (VH) genes in Alicia rabbits probably reflects a small deletion in the VH genes closest to the joining region.

PubMed Central

Allegrucci, M; Newman, B A; Young-Cooper, G O; Alexander, C B; Meier, D; Kelus, A S; Mage, R G

1990-01-01

Rabbits of the Alicia strain have a mutation (ali) that segregates with the immunoglobulin heavy-chain (lgh) locus and has a cis effect upon the expression of heavy-chain variable-region (VH) genes encoding the a2 allotype. In heterozygous a1/ali or a3/ali rabbits, serum immunoglobulins are almost entirely the products of the normal a1 or a3 allele and only traces of a2 immunoglobulin are detectable. Adult homozygous ali/ali rabbits likewise have normal immunoglobulin levels resulting from increased production of a-negative immunoglobulins and some residual ability to produce the a2 allotype. By contrast, the majority of the immunoglobulins of wild-type a2 rabbits are a2-positive and only a small percentage are a-negative. Genomic DNAs from homozygous mutant and wild-type animals were indistinguishable by Southern analyses using a variety of restriction enzyme digests and lgh probes. However, when digests with infrequently cutting enzymes were analyzed by transverse alternating-field electrophoresis, the ali DNA fragments were 10-15 kilobases smaller than the wild type. These fragments hybridized to probes both for VH and for a region of DNA a few kilobases downstream of the VH genes nearest the joining region. We suggest that this relatively small deletion affects a segment containing 3' VH genes with important regulatory functions, the loss of which leads to the ali phenotype. These results, and the fact that the 3' VH genes rearrange early in B-cell development, indicate that the 3' end of the VH locus probably plays a key role in regulation of VH gene expression. Images PMID:2115171

Decadal features of heavy rainfall events in eastern China

NASA Astrophysics Data System (ADS)

Chen, Huopo; Sun, Jianqi; Fan, Ke

2012-06-01

Based on daily precipitation data, the spatial-temporal features of heavy rainfall events (HREs) during 1960-2009 are investigated. The results indicate that the HREs experienced strong decadal variability in the past 50 years, and the decadal features varied across regions. More HRE days are observed in the 1960s, 1980s, and 1990s over Northeast China (NEC); in the 1960s, 1970s, and 1990s over North China (NC); in the early 1960s, 1980s, and 2000s over the Huaihe River basin (HR); in the 1970s-1990s over the mid-lower reaches of the Yangtze River valley (YR); and in the 1970s and 1990s over South China (SC). These decadal changes of HRE days in eastern China are closely associated with the decadal variations of water content and stratification stability of the local atmosphere. The intensity of HREs in each sub-region is also characterized by strong decadal variability. The HRE intensity and frequency co-vary on the long-term trend, and show consistent variability over NEC, NC, and YR, but inconsistent variability over SC and HR. Further analysis of the relationships between the annual rainfall and HRE frequency as well as intensity indicates that the HRE frequency is the major contributor to the total rainfall variability in eastern China, while the HRE intensity shows only relative weak contribution.

Efficacy of Moss as a Bioindicator of Heavy Metals When Controlling for Microbial Variables

NASA Astrophysics Data System (ADS)

Hall, K. M.; Atkinson, D. B.

2017-12-01

Interest in pollution has lead to the use of plants as indicators of particulate levels, acting as a cheaper, more widely dispersed resource than human manufactured alternatives. These biomonitors could provide accurate, current data across cities and in localized regions once the mechanism of accumulation is fully understood. One possible variable that could affect the efficacy of mosses as bioindicators of heavy metal absorption is the microbial colonies that thrive on the surface of these non vascular plants. Each micro organism has shown variance in absorption of heavy metals, leading to the question how much do the colonies contribute to measured variation? For this experiment samples of living mosses were collected from different trees in a region, each showing a different set of organisms growing on them. Measurements of cadmium were taken from a portion of the first samples, and second samples will be taken after dosing the rest of the living samples in a lab environment over time. Two of the mosses are being treated to limit microbial growth to compare to samples from the same tree. We hypothesize that there will be a significant difference either from one tree's absorption to the next, or between mosses from the same tree with limited growth due to the variation of microbial influence.

A fully synthetic human Fab antibody library based on fixed VH/VL framework pairings with favorable biophysical properties

PubMed Central

Tiller, Thomas; Schuster, Ingrid; Deppe, Dorothée; Siegers, Katja; Strohner, Ralf; Herrmann, Tanja; Berenguer, Marion; Poujol, Dominique; Stehle, Jennifer; Stark, Yvonne; Heßling, Martin; Daubert, Daniela; Felderer, Karin; Kaden, Stefan; Kölln, Johanna; Enzelberger, Markus; Urlinger, Stefanie

2013-01-01

This report describes the design, generation and testing of Ylanthia, a fully synthetic human Fab antibody library with 1.3E+11 clones. Ylanthia comprises 36 fixed immunoglobulin (Ig) variable heavy (VH)/variable light (VL) chain pairs, which cover a broad range of canonical complementarity-determining region (CDR) structures. The variable Ig heavy and Ig light (VH/VL) chain pairs were selected for biophysical characteristics favorable to manufacturing and development. The selection process included multiple parameters, e.g., assessment of protein expression yield, thermal stability and aggregation propensity in fragment antigen binding (Fab) and IgG1 formats, and relative Fab display rate on phage. The framework regions are fixed and the diversified CDRs were designed based on a systematic analysis of a large set of rearranged human antibody sequences. Care was taken to minimize the occurrence of potential posttranslational modification sites within the CDRs. Phage selection was performed against various antigens and unique antibodies with excellent biophysical properties were isolated. Our results confirm that quality can be built into an antibody library by prudent selection of unmodified, fully human VH/VL pairs as scaffolds. PMID:23571156

Mutation Pattern of Paired Immunoglobulin Heavy and Light Variable Domains in Chronic Lymphocytic Leukemia B Cells

PubMed Central

Ghiotto, Fabio; Marcatili, Paolo; Tenca, Claudya; Calevo, Maria Grazia; Yan, Xiao-Jie; Albesiano, Emilia; Bagnara, Davide; Colombo, Monica; Cutrona, Giovanna; Chu, Charles C; Morabito, Fortunato; Bruno, Silvia; Ferrarini, Manlio; Tramontano, Anna; Fais, Franco; Chiorazzi, Nicholas

2011-01-01

B-cell chronic lymphocytic leukemia (CLL) patients display leukemic clones bearing either germline or somatically mutated immunoglobulin heavy variable (IGHV ) genes. Most information on CLL immunoglobulins (Igs), such as the definition of stereotyped B-cell receptors (BCRs), was derived from germline unmutated Igs. In particular, detailed studies on the distribution and nature of mutations in paired heavy- and light-chain domains of CLL clones bearing mutated Igs are lacking. To address the somatic hyper-mutation dynamics of CLL Igs, we analyzed the mutation pattern of paired IGHV–diversity-joining (IGHV-D-J ) and immunoglobulin kappa/lambda variable-joining (IGK/LV-J ) rearrangements of 193 leukemic clones that displayed ≥2% mutations in at least one of the two immunoglobulin variable (IGV ) genes (IGHV and/or IGK/LV ). The relationship between the mutation frequency in IGHV and IGK/LV complementarity determining regions (CDRs) and framework regions (FRs) was evaluated by correlation analysis. Replacement (R) mutation frequency within IGK/LV chain CDRs correlated significantly with mutation frequency of paired IGHV CDRs in λ but not κ isotype CLL clones. CDRs of IGKV-J rearrangements displayed a lower percentage of R mutations than IGHVs. The frequency/pattern of mutations in kappa CLL Igs differed also from that in κ-expressing normal B cells described in the literature. Instead, the mutation frequency within the FRs of IGHV and either IGKV or IGLV was correlated. Notably, the amount of diversity introduced by replaced amino acids was comparable between IGHVs and IGKVs. The data indicate a different mutation pattern between κ and λ isotype CLL clones and suggest an antigenic selection that, in κ samples, operates against CDR variation. PMID:21785810

Chronic lymphocytic leukemia antibodies with a common stereotypic rearrangement recognize nonmuscle myosin heavy chain IIA

PubMed Central

Catera, Rosa; Hatzi, Katerina; Yan, Xiao-Jie; Zhang, Lu; Wang, Xiao Bo; Fales, Henry M.; Allen, Steven L.; Kolitz, Jonathan E.; Rai, Kanti R.; Chiorazzi, Nicholas

2008-01-01

Leukemic B lymphocytes of a large group of unrelated chronic lymphocytic leukemia (CLL) patients express an unmutated heavy chain immunoglobulin variable (V) region encoded by IGHV1-69, IGHD3-16, and IGHJ3 with nearly identical heavy and light chain complementarity-determining region 3 sequences. The likelihood that these patients developed CLL clones with identical antibody V regions randomly is highly improbable and suggests selection by a common antigen. Monoclonal antibodies (mAbs) from this stereotypic subset strongly bind cytoplasmic structures in HEp-2 cells. Therefore, HEp-2 cell extracts were immunoprecipitated with recombinant stereotypic subset-specific CLL mAbs, revealing a major protein band at approximately 225 kDa that was identified by mass spectrometry as nonmuscle myosin heavy chain IIA (MYHIIA). Reactivity of the stereotypic mAbs with MYHIIA was confirmed by Western blot and immunofluorescence colocalization with anti-MYHIIA antibody. Treatments that alter MYHIIA amounts and cytoplasmic localization resulted in a corresponding change in binding to these mAbs. The appearance of MYHIIA on the surface of cells undergoing stress or apoptosis suggests that CLL mAb may generally bind molecules exposed as a consequence of these events. Binding of CLL mAb to MYHIIA could promote the development, survival, and expansion of these leukemic cells. PMID:18812466

Method for altering antibody light chain interactions

DOEpatents

Stevens, Fred J.; Stevens, Priscilla Wilkins; Raffen, Rosemarie; Schiffer, Marianne

2002-01-01

A method for recombinant antibody subunit dimerization including modifying at least one codon of a nucleic acid sequence to replace an amino acid occurring naturally in the antibody with a charged amino acid at a position in the interface segment of the light polypeptide variable region, the charged amino acid having a first polarity; and modifying at least one codon of the nucleic acid sequence to replace an amino acid occurring naturally in the antibody with a charged amino acid at a position in an interface segment of the heavy polypeptide variable region corresponding to a position in the light polypeptide variable region, the charged amino acid having a second polarity opposite the first polarity. Nucleic acid sequences which code for novel light chain proteins, the latter of which are used in conjunction with the inventive method, are also provided.

Crystal structure of a shark single-domain antibody V region in complex with lysozyme.

PubMed

Stanfield, Robyn L; Dooley, Helen; Flajnik, Martin F; Wilson, Ian A

2004-09-17

Cartilaginous fish are the phylogenetically oldest living organisms known to possess components of the vertebrate adaptive immune system. Key to their immune response are heavy-chain, homodimeric immunoglobulins called new antigen receptors (IgNARs), in which the variable (V) domains recognize antigens with only a single immunoglobulin domain, akin to camelid heavy-chain V domains. The 1.45 angstrom resolution crystal structure of the type I IgNAR V domain in complex with hen egg-white lysozyme (HEL) reveals a minimal antigen-binding domain that contains only two of the three conventional complementarity-determining regions but still binds HEL with nanomolar affinity by means of a binding interface comparable in size to conventional antibodies.

Generation of Hot Water from Hot-Dry for Heavy-Oil Recovery in Northern Alberta, Canada

NASA Astrophysics Data System (ADS)

Pathak, V.; Babadagli, T.; Majorowicz, J. A.; Unsworth, M. J.

2011-12-01

The focus of prior applications of hot-dry-rock (HDR) technology was mostly aimed at generating electricity. In northern Alberta, the thermal gradient is low and, therefore, this technology is not suitable for electricity generation. On the other hand, the cost of steam and hot water, and environmental impacts, are becoming critical issues in heavy-oil and bitumen recovery in Alberta. Surface generation of steam or hot-water accounts for six percent of Canada's natural gas consumption and about 50 million tons of CO2 emission. Lowered cost and environmental impacts are critical in the widespread use of steam (for in-situ recovery) and hot-water (for surface extraction of bitumen) in this region. This paper provides an extensive analysis of hot-water generation to be used in heavy-oil/bitumen recovery. We tested different modeling approaches used to determine the amount of energy produced during HDR by history matching to example field data. The most suitable numerical and analytical models were used to apply the data obtained from different regions containing heavy-oil/bitumen deposits in northern Alberta. The heat generation capacity of different regions was determined and the use of this energy (in the form of hot-water) for surface extraction processes was evaluated. Original temperature gradients were applied as well as realistic basement formation characteristics through an extensive hydro thermal analysis in the region including an experimental well drilled to the depth of 2,500m. Existing natural fractures and possible hydraulic fracturing scenarios were evaluated from the heat generation capacity and the economics points of view. The main problem was modeling difficulties, especially determination and representation of fracture network characteristics. A sensitivity analysis was performed for the selected high temperature gradient regions in Alberta. In this practice, the characteristics of hydraulic fractures, injection rate, depth, the distance between injection and production wells and formation thickness were used as variables and an optimization study was carried out based on these variables. The results showed that the hot water (50 C at surface) needed in Fort McMurray for extraction could be obtained at lower costs than the generation of it using natural gas.

Mapping eco-environmental vulnerability patterns: An assessment framework based on remote sensing, GIS, and AHP

NASA Astrophysics Data System (ADS)

Anh, N. K.; Liou, Y. A.; Li, M. H.

2016-12-01

The motivation for this study is assessment of the eco-environment vulnerability based on four independent determinants: hydro-meteorology, topography, land resources, and human activities. An assessment framework is proposed to assess the vulnerable eco-environment by using 16 variables with 6 of them constructed from Landsat 8 satellite images. The remaining variables were extracted from digital maps. Each variable was evaluated and spatially mapped with the aid of an analytical hierarchy process (AHP) and geographical information system (GIS). The Thua Thien - Hue Province that has been experiencing natural disasters and urbanization in the recent decades is selected as our study area. An eco-environmental vulnerability map is assorted into six vulnerable levels consisting of potential, slight, light, medium, heavy, and very heavy vulnerabilities, representing 14%, 27%, 17%, 26%, 13%, 3% of the study area, respectively. It is found that heavy and very heavy vulnerable areas appear mainly in the low and medium lands with high intensification of social-economic activities and often suffer from flooding. Tiny percentages of medium and heavy vulnerable levels occur in high land areas probably caused by agricultural practices in highlands, slash and burn cultivation and removal of natural forests with new plantation forests and these regions are usually influenced by landslides, flash flooding. Based on our results, three ecological zones requiring different development and protection solutions are proposed to restore local eco-environment toward sustainable development. Our findings support the idea that eco-environmental vulnerability is driven by anthropogenic processes and enhanced by natural disaster in the Thua Thien-Hue Province.

Comparison of Kinematics and Muscle Activation in Free-Weight Back Squat With and Without Elastic Bands.

PubMed

Saeterbakken, Atle H; Andersen, Vidar; van den Tillaar, Roland

2016-04-01

The purpose of the study was to compare kinematic muscle activation when performing 6 repetition maximum (6RM) squats using constant (free weights) or variable resistance (free weights + elastic bands). Twenty recreationally trained women were recruited with 4.6 ± 2.1 years of resistance training experience and a relative strength (6RM/body mass) of 1.1. After a familiarization session identifying the 6RM loads, the participants performed 6RM squats using constant and variable resistance in a randomized order. The total resistance in the variable resistance group was similar to the constant resistance in the presticking region (98%), but greater in the sticking region (105%) and the poststicking region (113%). In addition, the presticking barbell velocity was 21.0% greater using variable than constant resistance, but 22.8% lower in the poststicking region. No significant differences in muscle electromyographic activity, time occurrence, and vertical displacement between the squat modalities were observed, except for higher barbell displacement poststicking using variable resistance. It was concluded that, due to differences in total resistance in the different regions performing variable compared with constant resistance, greater barbell velocity was observed in the presticking region and lower resistance was observed in the poststicking region. However, the extra resistance in the sticking and poststicking regions during the variable resistance modality did not cause increased muscle activity. When performing squats with heavy resistance, the authors recommend using variable resistance, but we suggest increasing the percentage resistance from the elastic bands or using chains.

Impact of Assimilation on Heavy Rainfall Simulations Using WRF Model: Sensitivity of Assimilation Results to Background Error Statistics

NASA Astrophysics Data System (ADS)

Rakesh, V.; Kantharao, B.

2017-03-01

Data assimilation is considered as one of the effective tools for improving forecast skill of mesoscale models. However, for optimum utilization and effective assimilation of observations, many factors need to be taken into account while designing data assimilation methodology. One of the critical components that determines the amount and propagation observation information into the analysis, is model background error statistics (BES). The objective of this study is to quantify how BES in data assimilation impacts on simulation of heavy rainfall events over a southern state in India, Karnataka. Simulations of 40 heavy rainfall events were carried out using Weather Research and Forecasting Model with and without data assimilation. The assimilation experiments were conducted using global and regional BES while the experiment with no assimilation was used as the baseline for assessing the impact of data assimilation. The simulated rainfall is verified against high-resolution rain-gage observations over Karnataka. Statistical evaluation using several accuracy and skill measures shows that data assimilation has improved the heavy rainfall simulation. Our results showed that the experiment using regional BES outperformed the one which used global BES. Critical thermo-dynamic variables conducive for heavy rainfall like convective available potential energy simulated using regional BES is more realistic compared to global BES. It is pointed out that these results have important practical implications in design of forecast platforms while decision-making during extreme weather events

Variable density mixing in turbulent jets with coflow

DOE Office of Scientific and Technical Information (OSTI.GOV)

Charonko, John James; Prestridge, Katherine Philomena

Two sets of experiments are performed to study variable-density effects in turbulent round jets with co flow at density ratios, s = 4.2 and s = 1.2. 10,000 instantaneous realisations of simultaneous 2-D PIV and PLIF at three axial locations in the momentumdominated region of the jet allow us to calculate the full t.k.e. budgets, providing insights into the mechanisms of density fluctuation correlations both axially and radially in a non- Boussinesq flow. The strongest variable-density effects are observed within the velocity half-width of the jet, r ~u1/2 . Variable density effects decrease the Reynolds stresses via increased turbulent massmore » flux in the heavy jet, as shown by previous jet centreline measurements. Radial pro les of turbulent flux show that in the lighter jet t.k.e. is moving away from the centreline, while in the heavy jet it is being transported both inwards towards the centreline and radially outwards. Negative t.k.e. production is observed in the heavy jet, and we demonstrate that this is caused by both reduced gradient stretching in the axial direction and increased turbulent mass fluxes. Large differences in advection are also observed between the two jets. The air jet has higher total advection caused by strong axial components, while density fluctuations in the heavy jet reduce the axial advection signi cantly. The budget mechanisms in the non-Boussinesq regime are best understood using effective density and velocity half-width, ρeff ¯u 3 1,CL/r ~u1/2,eff , a modi cation of previous scaling.« less

Variable density mixing in turbulent jets with coflow

DOE PAGES

Charonko, John James; Prestridge, Katherine Philomena

2017-07-24

Two sets of experiments are performed to study variable-density effects in turbulent round jets with co flow at density ratios, s = 4.2 and s = 1.2. 10,000 instantaneous realisations of simultaneous 2-D PIV and PLIF at three axial locations in the momentumdominated region of the jet allow us to calculate the full t.k.e. budgets, providing insights into the mechanisms of density fluctuation correlations both axially and radially in a non- Boussinesq flow. The strongest variable-density effects are observed within the velocity half-width of the jet, r ~u1/2 . Variable density effects decrease the Reynolds stresses via increased turbulent massmore » flux in the heavy jet, as shown by previous jet centreline measurements. Radial pro les of turbulent flux show that in the lighter jet t.k.e. is moving away from the centreline, while in the heavy jet it is being transported both inwards towards the centreline and radially outwards. Negative t.k.e. production is observed in the heavy jet, and we demonstrate that this is caused by both reduced gradient stretching in the axial direction and increased turbulent mass fluxes. Large differences in advection are also observed between the two jets. The air jet has higher total advection caused by strong axial components, while density fluctuations in the heavy jet reduce the axial advection signi cantly. The budget mechanisms in the non-Boussinesq regime are best understood using effective density and velocity half-width, ρeff ¯u 3 1,CL/r ~u1/2,eff , a modi cation of previous scaling.« less

Spatial-temporal eco-environmental vulnerability assessment and its influential factors based on Landsat data

NASA Astrophysics Data System (ADS)

Anh, N. K.; Liou, Y. A.; Ming-Hsu, L.

2016-12-01

Regional land use/land cover (LULC) changes lead to various changes in ecological processes and, in turn, alter regional micro-climate. To understand eco-environmental responses to LULC changes, eco-environmental evaluation is thus required with aims to identify vulnerable regions and influential factors, so that practical measures for environmental protection and management may be proposed. The Thua Thien - Hue Province has been experiencing urbanization at a rapid rate in both population and physical size. The urban land, agricultural land, and aquaculture activities have been invasively into natural space and caused eco-environment deterioration by land desertification, soil erosion, shrinking forest resources,…etc. In this study, an assessment framework that is composed by 11 variables with 9 of them constructed from Landsat time series is proposed to serve as basis to examine eco-environmental vulnerability in the Thua Thien - Hue Province in years 1989, 2003, and 2014. An eco-environmental vulnerability map is assorted into six vulnerability levels consisting of potential, slight, light, medium, heavy, and very heavy vulnerabilities. Result shows that there is an increasing trend in eco-environmental vulnerability in general with expected evolving distributions in heavy and very heavy vulnerability levels, which mainly lying on developed land, bare land, semi bare land, agricultural land, and poor and recovery forests. In contrast, there is a significant decline in potential vulnerability level. The contributing factors of an upward trend in medium, heavy, and very heavy levels include: (i) a large natural forest converted to plantation forest and agriculture land; and (ii) significant expansion of developed land leading to difference in thermal signatures in urban areas as compared with those of the surrounding areas. It is concluded that anthropogenic processes with transformation on LULC has amplified the vulnerability of eco-environment in the study area.

Array-Based Rational Design of Short Peptide Probe-Derived from an Anti-TNT Monoclonal Antibody.

PubMed

Okochi, Mina; Muto, Masaki; Yanai, Kentaro; Tanaka, Masayoshi; Onodera, Takeshi; Wang, Jin; Ueda, Hiroshi; Toko, Kiyoshi

2017-10-09

Complementarity-determining regions (CDRs) are sites on the variable chains of antibodies responsible for binding to specific antigens. In this study, a short peptide probe for recognition of 2,4,6-trinitrotoluene (TNT), was identified by testing sequences derived from the CDRs of an anti-TNT monoclonal antibody. The major TNT-binding site in this antibody was identified in the heavy chain CDR3 by antigen docking simulation and confirmed by an immunoassay using a spot-synthesis based peptide array comprising amino acid sequences of six CDRs in the variable region. A peptide derived from heavy chain CDR3 (RGYSSFIYWF) bound to TNT with a dissociation constant of 1.3 μM measured by surface plasmon resonance. Substitution of selected amino acids with basic residues increased TNT binding while substitution with acidic amino acids decreased affinity, an isoleucine to arginine change showed the greatest improvement of 1.8-fold. The ability to create simple peptide binders of volatile organic compounds from sequence information provided by the immune system in the creation of an immune response will be beneficial for sensor developments in the future.

Determination of allergen specificity by heavy chains in grass pollen allergen-specific IgE antibodies.

PubMed

Gadermaier, Elisabeth; Flicker, Sabine; Lupinek, Christian; Steinberger, Peter; Valenta, Rudolf

2013-04-01

Affinity and clonality of allergen-specific IgE antibodies are important determinants for the magnitude of IgE-mediated allergic inflammation. We sought to analyze the contribution of heavy and light chains of human allergen-specific IgE antibodies for allergen specificity and to test whether promiscuous pairing of heavy and light chains with different allergen specificity allows binding and might affect affinity. Ten IgE Fabs specific for 3 non-cross-reactive major timothy grass pollen allergens (Phl p 1, Phl p 2, and Phl p 5) obtained by means of combinatorial cloning from patients with grass pollen allergy were used to construct stable recombinant single chain variable fragments (ScFvs) representing the original Fabs and shuffled ScFvs in which heavy chains were recombined with light chains from IgE Fabs with specificity for other allergens by using the pCANTAB 5 E expression system. Possible ancestor genes for the heavy chain and light chain variable region-encoding genes were determined by using sequence comparison with the ImMunoGeneTics database, and their chromosomal locations were determined. Recombinant ScFvs were tested for allergen specificity and epitope recognition by means of direct and sandwich ELISA, and affinity by using surface plasmon resonance experiments. The shuffling experiments demonstrate that promiscuous pairing of heavy and light chains is possible and maintains allergen specificity, which is mainly determined by the heavy chains. ScFvs consisting of different heavy and light chains exhibited different affinities and even epitope specificity for the corresponding allergen. Our results indicate that allergen specificity of allergen-specific IgE is mainly determined by the heavy chains. Different heavy and light chain pairings in allergen-specific IgE antibodies affect affinity and epitope specificity and thus might influence clinical reactivity to allergens. Copyright © 2012 American Academy of Allergy, Asthma & Immunology. Published by Mosby, Inc. All rights reserved.

On the Role of Ionospheric Ions in Sawtooth Events

NASA Astrophysics Data System (ADS)

Lund, E. J.; Nowrouzi, N.; Kistler, L. M.; Cai, X.; Frey, H. U.

2018-01-01

Simulations have suggested that feedback of heavy ions originating in the ionosphere is an important mechanism for driving sawtooth injections. However, this feedback may only be necessary for events driven by coronal mass ejections (CMEs), whereas in events driven by streaming interaction regions (SIRs), solar wind variability may suffice to drive these injections. Here we present case studies of two sawtooth events for which in situ data are available in both the magnetotail (Cluster) and the nightside auroral region (FAST), as well as global auroral images (IMAGE). One event, on 1 October 2001, was driven by a CME; the other, on 24 October 2002, was driven by an SIR. The available data do not support the hypothesis that heavy ion feedback is necessary to drive either event. This result is consistent with simulations of the SIR-driven event but disagrees with simulation results for a different CME-driven event. We also find that in an overwhelming majority of the sawtooth injections for which Cluster tail data are available, the O+ observed in the tail comes from the cusp rather than the nightside auroral region, which further casts doubt on the hypothesis that ionospheric heavy ion feedback is the cause of sawtooth injections.

Trends in rainfall and rainfall-related extremes in the east coast of peninsular Malaysia

NASA Astrophysics Data System (ADS)

Mayowa, Olaniya Olusegun; Pour, Sahar Hadi; Shahid, Shamsuddin; Mohsenipour, Morteza; Harun, Sobri Bin; Heryansyah, Arien; Ismail, Tarmizi

2015-12-01

The coastlines have been identified as the most vulnerable regions with respect to hydrological hazards as a result of climate change and variability. The east of peninsular Malaysia is not an exception for this, considering the evidence of heavy rainfall resulting in floods as an annual phenomenon and also water scarcity due to long dry spells in the region. This study examines recent trends in rainfall and rainfall- related extremes such as, maximum daily rainfall, number of rainy days, average rainfall intensity, heavy rainfall days, extreme rainfall days, and precipitation concentration index in the east coast of peninsular Malaysia. Recent 40 years (1971-2010) rainfall records from 54 stations along the east coast of peninsular Malaysia have been analyzed using the non-parametric Mann-Kendall test and the Sen's slope method. The Monte Carlo simulation technique has been used to determine the field significance of the regional trends. The results showed that there was a substantial increase in the annual rainfall as well as the rainfall during the monsoon period. Also, there was an increase in the number of heavy rainfall days during the past four decades.

Generation of human Fab antibody libraries: PCR amplification and assembly of light- and heavy-chain coding sequences.

PubMed

Andris-Widhopf, Jennifer; Steinberger, Peter; Fuller, Roberta; Rader, Christoph; Barbas, Carlos F

2011-09-01

The development of therapeutic antibodies for use in the treatment of human diseases has long been a goal for many researchers in the antibody field. One way to obtain these antibodies is through phage-display libraries constructed from human lymphocytes. This protocol describes the construction of human Fab (fragment antigen binding) antibody libraries. In this method, the individual rearranged heavy- and light-chain variable regions are amplified separately and are linked through a series of overlap polymerase chain reaction (PCR) steps to give the final Fab products that are used for cloning.

Selection and characterization of naturally occurring single-domain (IgNAR) antibody fragments from immunized sharks by phage display.

PubMed

Dooley, Helen; Flajnik, Martin F; Porter, Andrew J

2003-09-01

The novel immunoglobulin isotype novel antigen receptor (IgNAR) is found in cartilaginous fish and is composed of a heavy-chain homodimer that does not associate with light chains. The variable regions of IgNAR function as independent domains similar to those found in the heavy-chain immunoglobulins of Camelids. Here, we describe the successful cloning and generation of a phage-displayed, single-domain library based upon the variable domain of IgNAR. Selection of such a library generated from nurse sharks (Ginglymostoma cirratum) immunized with the model antigen hen egg-white lysozyme (HEL) enabled the successful isolation of intact antigen-specific binders matured in vivo. The selected variable domains were shown to be functionally expressed in Escherichia coli, extremely stable, and bind to antigen specifically with an affinity in the nanomolar range. This approach can therefore be considered as an alternative route for the isolation of minimal antigen-binding fragments with favorable characteristics.

Three millennia of heavy rainfalls in Western Mediterranean: frequency, seasonality and atmospheric drivers

PubMed Central

Corella, J. P.; Valero-Garcés, B. L.; Vicente- Serrano, S. M.; Brauer, A.; Benito, G.

2016-01-01

Documenting subdecadal-scale heavy rainfall (HR) variability over several millennia can rarely be accomplished due to the paucity of high resolution, homogeneous and continuous proxy records. Here, using a unique, seasonally resolved lake record from southern Europe, we quantify temporal changes in extreme HR events for the last 2,800 years in this region and their correlation with negative phases of the Mediterranean Oscillation (MO). Notably, scarce HR dominated by a persistent positive MO mode characterizes the so-called Migration period (CE 370–670). Large hydroclimatic variability, particularly between CE 1012 and 1164, singles out the Medieval Climatic Anomaly, whereas more stationary HR conditions occurred between CE 1537 and 1805 coinciding with the Little Ice Age. This exceptional paleohydrological record highlights that the present-day trend towards strengthened hydrological deficit and less HR in the western Mediterranean is neither acute nor unusual in the context of Late Holocene hydrometeorological variability at centennial to decadal time scales. PMID:27910953

Three millennia of heavy rainfalls in Western Mediterranean: frequency, seasonality and atmospheric drivers

NASA Astrophysics Data System (ADS)

Corella, J. P.; Valero-Garcés, B. L.; Vicente-Serrano, S. M.; Brauer, A.; Benito, G.

2016-12-01

Documenting subdecadal-scale heavy rainfall (HR) variability over several millennia can rarely be accomplished due to the paucity of high resolution, homogeneous and continuous proxy records. Here, using a unique, seasonally resolved lake record from southern Europe, we quantify temporal changes in extreme HR events for the last 2,800 years in this region and their correlation with negative phases of the Mediterranean Oscillation (MO). Notably, scarce HR dominated by a persistent positive MO mode characterizes the so-called Migration period (CE 370-670). Large hydroclimatic variability, particularly between CE 1012 and 1164, singles out the Medieval Climatic Anomaly, whereas more stationary HR conditions occurred between CE 1537 and 1805 coinciding with the Little Ice Age. This exceptional paleohydrological record highlights that the present-day trend towards strengthened hydrological deficit and less HR in the western Mediterranean is neither acute nor unusual in the context of Late Holocene hydrometeorological variability at centennial to decadal time scales.

The role of internal climate variability for interpreting climate change scenarios

NASA Astrophysics Data System (ADS)

Maraun, Douglas

2013-04-01

When communicating information on climate change, the use of multi-model ensembles has been advocated to sample uncertainties over a range as wide as possible. To meet the demand for easily accessible results, the ensemble is often summarised by its multi-model mean signal. In rare cases, additional uncertainty measures are given to avoid loosing all information on the ensemble spread, e.g., the highest and lowest projected values. Such approaches, however, disregard the fundamentally different nature of the different types of uncertainties and might cause wrong interpretations and subsequently wrong decisions for adaptation. Whereas scenario and climate model uncertainties are of epistemic nature, i.e., caused by an in principle reducible lack of knowledge, uncertainties due to internal climate variability are aleatory, i.e., inherently stochastic and irreducible. As wisely stated in the proverb "climate is what you expect, weather is what you get", a specific region will experience one stochastic realisation of the climate system, but never exactly the expected climate change signal as given by a multi model mean. Depending on the meteorological variable, region and lead time, the signal might be strong or weak compared to the stochastic component. In cases of a low signal-to-noise ratio, even if the climate change signal is a well defined trend, no trends or even opposite trends might be experienced. Here I propose to use the time of emergence (TOE) to quantify and communicate when climate change trends will exceed the internal variability. The TOE provides a useful measure for end users to assess the time horizon for implementing adaptation measures. Furthermore, internal variability is scale dependent - the more local the scale, the stronger the influence of internal climate variability. Thus investigating the TOE as a function of spatial scale could help to assess the required spatial scale for implementing adaptation measures. I exemplify this proposal with a recently published study on the TOE for mean and heavy precipitation trends in Europe. In some regions trends emerge only late in the 21st century or even later, suggesting that in these regions adaptation to internal variability rather than to climate change is required. Yet in other regions the climate change signal is strong, urging for timely adaptation. Douglas Maraun, When at what scale will trends in European mean and heavy precipitation emerge? Env. Res. Lett., in press, 2013.

Efficient heterologous expression and secretion in Aspergillus oryzae of a llama variable heavy-chain antibody fragment V(HH) against EGFR.

PubMed

Okazaki, Fumiyoshi; Aoki, Jun-ichi; Tabuchi, Soichiro; Tanaka, Tsutomu; Ogino, Chiaki; Kondo, Akihiko

2012-10-01

We have constructed a filamentous fungus Aspergillus oryzae that secretes a llama variable heavy-chain antibody fragment (V(HH)) that binds specifically to epidermal growth factor receptor (EGFR) in a culture medium. A major improvement in yield was achieved by fusing the V(HH) with a Taka-amylase A signal sequence (sTAA) and a segment of 28 amino acids from the N-terminal region of Rhizopus oryzae lipase (N28). The yields of secreted, immunologically active anti-EGFR V(HH) reached 73.8 mg/1 in a Sakaguchi flask. The V(HH) fragments were released from the sTAA or N28 proteins by an indigenous A. oryzae protease during cultivation. The purified recombinant V(HH) fragment was specifically recognized and could bind to the EGFR with a high affinity.

Effects of heavy metal pollution from mining and smelting on enchytraeid communities under different land management and soil conditions.

PubMed

Kapusta, Paweł; Sobczyk, Łukasz

2015-12-01

We studied enchytraeid communities in several habitats polluted by heavy metals from Zn-Pb mining and smelting activities. We sampled 41 sites that differed in the type of substratum (carbonate rock, metal-rich carbonate mining waste, siliceous sand) and land management (planting Scots pine, topsoiling, leaving to natural succession), and the distance from the smelter. Our main aims were to determine which pollution variables and natural factors most influenced enchytraeid species composition, richness and density, and examine what was the effect of planting Scots pine (reclamation) on enchytraeid communities. The soils harboured on average 1 to 5 enchytraeid species and 700 to 18,300 individuals per square metre, depending on the habitat. These figures were generally lower than those reported from unpolluted regions. Redundancy and multiple regression analyses confirmed the negative impact of heavy metal pollution on both enchytraeid community structure and abundance. Among pollution variables, the distance from the smelter best explained the variation in enchytraeid communities. The concentrations of heavy metals in the soil had less (e.g. total Pb and exchangeable Zn) or negligible (water-soluble forms) explanatory power. Natural soil properties were nearly irrelevant for enchytraeids, except for soil pH, which determined the species composition. Plant species richness was an important explanatory variable, as it positively affected most parameters of enchytraeid community. The results of two-by-two factorial comparisons (planting Scots pine vs. natural succession; carbonate mining waste vs. siliceous sand) suggest that reclamation can improve soil quality for biota, since it increased the diversity and abundance of enchytraeids; this effect was not dependent on the type of substratum. In conclusion, enchytraeids responded negatively to heavy metal pollution and their response was consistent and clear. These animals can be used as indicators of metal toxicity even in the presence of high natural variability, but it is recommended to study their species composition. Copyright © 2015 Elsevier B.V. All rights reserved.

Variability of extreme weather events over the equatorial East Africa, a case study of rainfall in Kenya and Uganda

NASA Astrophysics Data System (ADS)

Ongoma, Victor; Chen, Haishan; Omony, George William

2018-01-01

This study investigates the variability of extreme rainfall events over East Africa (EA), using indices from the World Meteorological Organization (WMO) Expert Team on Climate Change Detection and Indices (ETCCDI). The analysis was based on observed daily rainfall from 23 weather stations, with length varying within 1961 and 2010. The indices considered are: wet days ( R ≥1 mm), annual total precipitation in wet days (PRCPTOT), simple daily intensity index (SDII), heavy precipitation days ( R ≥ 10 mm), very heavy precipitation days ( R ≥ 20 mm), and severe precipitation ( R ≥ 50 mm). The non-parametric Mann-Kendall statistical analysis was carried out to identify trends in the data. Temporal precipitation distribution was different from station to station. Almost all indices considered are decreasing with time. The analysis shows that the PRCPTOT, very heavy precipitation, and severe precipitation are generally declining insignificantly at 5 % significant level. The PRCPTOT is evidently decreasing over Arid and Semi-Arid Land (ASAL) as compared to other parts of EA. The number of days that recorded heavy rainfall is generally decreasing but starts to rise in the last decade although the changes are insignificant. Both PRCPTOT and heavy precipitation show a recovery in trend starting in the 1990s. The SDII shows a reduction in most areas, especially the in ASAL. The changes give a possible indication of the ongoing climate variability and change which modify the rainfall regime of EA. The results form a basis for further research, utilizing longer datasets over the entire region to reduce the generalizations made herein. Continuous monitoring of extreme events in EA is critical, given that rainfall is projected to increase in the twenty-first century.

A complementarity-determining region synthetic peptide acts as a miniantibody and neutralizes human immunodeficiency virus type 1 in vitro.

PubMed Central

Levi, M; Sällberg, M; Rudén, U; Herlyn, D; Maruyama, H; Wigzell, H; Marks, J; Wahren, B

1993-01-01

A complementarity-determining region (CDR) of the mouse monoclonal antibody (mAb) F58 was constructed with specificity to a neutralization-inducing region of human immunodeficiency virus type 1 (HIV-1). The mAb has its major reactivity to the amino acid sequence I--GPGRA in the V3 viral envelope region. All CDRs including several framework amino acids were synthesized from the sequence deduced by cloning and sequencing mAb F58 heavy- and light-chain variable domains. Peptides derived from the third heavy-chain domain (CDR-H3) alone or in combination with the other CDR sequences competed with F58 mAb for the V3 region. The CDR-H3 peptide was chemically modified by cyclization and then inhibited HIV-1 replication as well as syncytium formation by infected cells. Both the homologous IIIB viral strain to which the F58 mAb was induced and the heterologous SF2 strain were inhibited. This synthetic peptide had unexpectedly potent antiviral activity and may be a potential tool for treatment of HIV-infected persons. PMID:7685100

The application of microtextural and heavy mineral analysis to discriminate between storm and tsunami deposits

USGS Publications Warehouse

Costa, Pedro J.M.; Gelfenbaum, Guy R.; Dawson, Sue; La selle, Seanpaul; Milne, F; Cascalho, J.; Ponte Lira, C.; Andrade, C.; Freitas, M. C.; Jaffe, Bruce E.

2017-01-01

Recent work has applied microtextural and heavy mineral analyses to sandy storm and tsunami deposits from Portugal, Scotland, Indonesia and the USA. We looked at the interpretation of microtextural imagery (scanning electron microscopy) of quartz grains and heavy mineral compositions. We consider inundation events of different chronologies and sources (the AD 1755 Lisbon and 2004 Indian Ocean tsunamis, the Great Storm of 11 January 2005 in Scotland, and Hurricane Sandy in 2012) that affected contrasting coastal and hinterland settings with different regional oceanographic conditions. Storm and tsunami deposits were examined along with potential source sediments (alluvial, beach, dune and nearshore sediments) to determine provenance.Results suggest that tsunami deposits typically exhibit a significant spatial variation in grain sizes, microtextures and heavy minerals. Storm deposits show less variability, especially in vertical profiles. Tsunami and storm quartz grains had more percussion marks and fresh surfaces compared to potential source material. Moreover, in the studied cases, tsunami samples had fewer fresh surfaces than storm deposits.Heavy mineral assemblages are typically site-specific. The concentration of heavy minerals decreases upwards in tsunamigenic units, whereas storm sediments show cyclic concentrations of heavy minerals, reflected in the laminations observed macroscopically in the deposits.

ARM Cloud Aerosol Precipitation Experiment (ACAPEX) Science Plan

DOE Office of Scientific and Technical Information (OSTI.GOV)

Leung, L. R.; Prather, K.; Ralph, R.

The western U.S. receives precipitation predominantly during the cold season when storms approach from the Pacific Ocean. The snowpack that accumulates during winter storms provides about 70-90% of water supply for the region. Understanding and modeling the fundamental processes that govern the large precipitation variability and extremes in the western U.S. is a critical test for the ability of climate models to predict the regional water cycle, including floods and droughts. Two elements of significant importance in predicting precipitation variability in the western U.S. are atmospheric rivers and aerosols. Atmospheric rivers (ARs) are narrow bands of enhanced water vapor associatedmore » with the warm sector of extratropical cyclones over the Pacific and Atlantic oceans. Because of the large lower-tropospheric water vapor content, strong atmospheric winds and neutral moist static stability, some ARs can produce heavy precipitation by orographic enhancement during landfall on the U.S. West Coast. While ARs are responsible for a large fraction of heavy precipitation in that region during winter, much of the rest of the orographic precipitation occurs in post-frontal clouds, which are typically quite shallow, with tops just high enough to pass the mountain barrier. Such clouds are inherently quite susceptible to aerosol effects on both warm rain and ice precipitation-forming processes.« less

Environmental impact of introducing plant covers in the taluses of terraces: Implications for mitigating agricultural soil erosion and runoff

USDA-ARS?s Scientific Manuscript database

Southeastern Spain, particularly the coast of Granada and Málaga, is an important region for subtropical cultivation. Orchards have been established there on the slopes of the mountainous areas in constructed terraces. The climate is characterized by heavy periodic rainfall that is variable in space...

Maturation of Shark Single-Domain (IgNAR) Antibodies: Evidence for Induced-Fit Binding

DOE Office of Scientific and Technical Information (OSTI.GOV)

Stanfield, R.L.; Dooley, H.; Verdino, P.

2007-07-13

Sharks express an unusual heavy-chain isotype called IgNAR, whose variable regions bind antigen as independent soluble domains. To further probe affinity maturation of the IgNAR response, we structurally characterized the germline and somatically matured versions of a type II variable (V) region, both in the presence and absence of its antigen, hen egg-white lysozyme. Despite a disulfide bond linking complementarity determining regions (CDRs) 1 and 3, both germline and somatically matured V regions displayed significant structural changes in these CDRs upon complex formation with antigen. Somatic mutations in the IgNAR V region serve to increase the number of contacts withmore » antigen, as reflected by a tenfold increase in affinity, and one of these mutations appears to stabilize the CDR3 region. In addition, a residue in the HV4 loop plays an important role in antibody-antigen interaction, consistent with the high rate of somatic mutations in this non-CDR loop.« less

Understanding Regional Effects on Climate Change and Multidisciplinary Approarch for Coping Strategies - Case Study at Rural Village in Sub-Saharan Africa -

NASA Astrophysics Data System (ADS)

Yoshimura, M.; Yamashita, M.

2018-04-01

This paper describes on understanding the regional effects on global climate change and subsistence farmers' coping strategies through our field investigation and multidimensional data analysis from the resilience point of view. The major research question of this study is to understand what actions villagers took as the coping strategy against the heavy rainfall shock caused by climate change. Our research interest is how geospatial information technique can contribute to this research question. The study area is located in Sinazongwe district, Southern province of Zambia. As for the field investigation, we set the study sites A, B and C where are located in the lower terrace, middle escarpment and upper terrace, respectively. In the rainy season of 2007/2008, our study site had a heavy rainfall and many crop fields were damaged. In this crop year, the annual rainfalls in site A and C were 1442 mm/year and 1332 mm/year respectively. This is about two times different with the long term average of rainfall 694.9 mm/year in Sinazongwe district. It is confirmed that approximately 20 % of crop fields were damaged by heavy rainfall through our field investigation. It was so severe negative consequences for all of villages because about 80 % of whole damaged crop fields were maize fields. Maize is staple food in this region. Here, we have analysed and discussed how villagers cope from the serious damage of crops. The maize harvest varies every year depending on rainfall and topographic position. If a farmer possesses maize fields at various topographic positions, they can avoid severe negative consequences of climate variability such as drought or heavy rainfall. However, not all farmers have access to fields at various topographic positions. It is important to know where each household's characteristics when we consider their strategy of livelihood for climate variabilities. Through this study, we confirmed the way to strengthen resilience of subsistence farmers as follows: it is necessary to prepare variable crops and emergency food stock with not only diverse but also composite social institution. The resilient society seems to be the society with insurance such as adaptation ability against environmental shock caused by climate change. From the agricultural production point of view, both diversity and yield ability are also important.

Heavy-Mineral Placer Potential Map of the U.S. Continental Shelf, Western and Northern Gulf of Mexico

USGS Publications Warehouse

Shideler, Gerald L.

1988-01-01

The establishment of the Exclusive Economic Zone (EEZ) in 1983 by Presidential Proclamation opened for natural resource exploration a vast offshore frontier area contiguous to the United States and its territories. The EEZ extends from the seaward limit of state waters (3 nautical mi from shore) to 200 nautical mi offshore, and it includes the continental shelves. Within the context of the EEZ natural resource assessment effort, the purpose of this study is to delineate, on a regional basis, the potential for heavy-mineral placers on the U.S. Continental Shelf in the western and northern Gulf of Mexico from the United States-Mexico border to the Alabama-Florida state line. This map is intended to serve as a general guide for placer exploration. It shows favorable sea-floor areas for placer occurrence in water depths ranging from 0 to 100 fathoms (600 ft). The map can be used as a guide for focusing costly exploratory efforts, such as coring operations and geophysical surveys. The potential economic value of heavy-mineral placer concentrations on the U.S. Continental Shelf is a function of both geologic and economic variables. Geologic variables include the composition and concentration of the heavy-mineral assemblages and their environment of deposition. Economic variables include the current world market price of extracted metals, as well as the cost of mining, processing, and marketing the metals. These economic factors, in turn, are tempered by the nation1s socio-political climate, which determines its need for specific mineral resources at any given time.

Same-Day Imaging Using Small Proteins: Clinical Experience and Translational Prospects in Oncology.

PubMed

Krasniqi, Ahmet; D'Huyvetter, Matthias; Devoogdt, Nick; Frejd, Fredrik Y; Sörensen, Jens; Orlova, Anna; Keyaerts, Marleen; Tolmachev, Vladimir

2018-06-01

Imaging of expression of therapeutic targets may enable stratification of patients for targeted treatments. The use of small radiolabeled probes based on the heavy-chain variable region of heavy-chain-only immunoglobulins or nonimmunoglobulin scaffolds permits rapid localization of radiotracers in tumors and rapid clearance from normal tissues. This makes high-contrast imaging possible on the day of injection. This mini review focuses on small proteins for radionuclide-based imaging that would allow same-day imaging, with the emphasis on clinical applications and promising preclinical developments within the field of oncology. © 2018 by the Society of Nuclear Medicine and Molecular Imaging.

Source Regions of the Interplanetary Magnetic Field and Variability in Heavy-Ion Elemental Composition in Gradual Solar Energetic Particle Events

NASA Technical Reports Server (NTRS)

Ko, Yuan-Kuen; Tylka, Allan J.; Ng, Chee K.; Wang, Yi-Ming; Dietrich, William F.

2013-01-01

Gradual solar energetic particle (SEP) events are those in which ions are accelerated to their observed energies by interactions with a shock driven by a fast coronal mass-ejection (CME). Previous studies have shown that much of the observed event-to-event variability can be understood in terms of shock speed and evolution in the shock-normal angle. But an equally important factor, particularly for the elemental composition, is the origin of the suprathermal seed particles upon which the shock acts. To tackle this issue, we (1) use observed solar-wind speed, magnetograms, and the PFSS model to map the Sun-L1 interplanetary magnetic field (IMF) line back to its source region on the Sun at the time of the SEP observations; and (2) then look for correlation between SEP composition (as measured by Wind and ACE at approx. 2-30 MeV/nucleon) and characteristics of the identified IMF-source regions. The study is based on 24 SEP events, identified as a statistically-significant increase in approx. 20 MeV protons and occurring in 1998 and 2003-2006, when the rate of newly-emergent solar magnetic flux and CMEs was lower than in solar-maximum years and the field-line tracing is therefore more likely to be successful. We find that the gradual SEP Fe/O is correlated with the field strength at the IMF-source, with the largest enhancements occurring when the footpoint field is strong, due to the nearby presence of an active region. In these cases, other elemental ratios show a strong charge-to-mass (q/M) ordering, at least on average, similar to that found in impulsive events. These results lead us to suggest that magnetic reconnection in footpoint regions near active regions bias the heavy-ion composition of suprathermal seed ions by processes qualitatively similar to those that produce larger heavy-ion enhancements in impulsive SEP events. To address potential technical concerns about our analysis, we also discuss efforts to exclude impulsive SEP events from our event sample.

Source Regions of the Interplanetary Magnetic Field and Variability in Heavy-Ion Elemental Composition in Gradual Solar Energetic Particle Events (Invited)

NASA Astrophysics Data System (ADS)

Tylka, A. J.; Ko, Y.; Ng, C. K.; Wang, Y.; Dietrich, W. F.

2013-12-01

Gradual solar energetic particle (SEP) events are those in which ions are accelerated to their observed energies by interactions with a shock driven by a fast coronal mass-ejection (CME). Previous studies have shown that much of the observed event-to-event variability can be understood in terms of shock speed and evolution in the shock-normal angle. But an equally important factor, particularly for the elemental composition, is the origin of the suprathermal seed particles upon which the shock acts. To tackle this issue, we (1) use observed solar-wind speed, magnetograms, and the PFSS model to map the Sun-L1 interplanetary magnetic field (IMF) line back to its source region on the Sun at the time of the SEP observations; and (2) then look for correlation between SEP composition (as measured by Wind and ACE at ~2-30 MeV/nucleon) and characteristics of the identified IMF-source regions. The study is based on 24 SEP events, identified as a statistically-significant increase in ~20 MeV protons and occurring in 1998 and 2003-2006, when the rate of newly-emergent solar magnetic flux and CMEs was lower than in solar-maximum years and the field-line tracing is therefore more likely to be successful. We find that the gradual SEP Fe/O is correlated with the field strength at the IMF-source, with the largest enhancements occurring when the footpoint field is strong, due to the nearby presence of an active region. In these cases, other elemental ratios show a strong charge-to-mass (q/M) ordering, at least on average, similar to that found in impulsive events. These results lead us to suggest that magnetic reconnection in footpoint regions near active regions bias the heavy-ion composition of suprathermal seed ions by processes qualitatively similar to those that produce larger heavy-ion enhancements in impulsive SEP events. To address potential technical concerns about our analysis, we also discuss efforts to exclude impulsive SEP events from our event sample.

Heavy Metals in the Atmosphere over the Northern Coast of Eurasia: Interannual Variations in Winter and Summer

NASA Astrophysics Data System (ADS)

Vinogradova, A. A.; Ivanova, Yu. A.

2017-12-01

Interannual variations in the level of anthropogenic contamination of the surface air in the northern areas of Russia are studied, which are related to a change in the direction of air mass transport. The transport of air and heavy metals to four sites located on territories of nature reserves on the coast of the Arctic Ocean (from the Kola Peninsula to a delta of the Lena River) in winter (January) and summer (July) is analyzed for 2000-2013. Indices of atmospheric circulation and data on the emission of pollutants into the atmosphere in cities and regions of Russia are involved in the analysis. Concentrations of seven heavy metals in the surface air are evaluated in the Arctic regions under study and their interannual, spatial, and seasonal variations are discussed. A strong interannual variability of atmospheric circulation differently influences the variations in the atmosphere contamination with different anthropogenic heavy metals in various areas of the north of Russia. The concentration ratios of heavy metals under study are different for each site in different years. The interannual and seasonal variations in the contamination level have maximum values for heavy metals arriving from most distant sources. Thus, the results of measuring the content of anthropogenic contaminants in the air of reference areas during one season or even one year should not serve a basis for longterm conclusions and forecasts. It would be also unjustified to make general conclusions on the contamination level of the environment from observation results for only one contaminant and/or only at a single site.

Grasping the nettle: A bacterial invasin that targets immunoglobulin variable domains.

PubMed

Barlow, Paul

2018-06-01

In a new paper, the protein InvD from Yersinia pseudotuberculosis , a zoonotic pathogen, is shown to assist late-stage invasion of intestinal epithelia. Remarkably, InvD acts by binding the Fab region of IgG or IgA. It straddles adjacent light-chain and heavy-chain variable domains, but its binding is different from that of antigens in that complementarity-determining regions do not participate. Structure determination revealed that its Fab-interacting domain adopts an immunoglobulin-like fold, fused to the preceding immunoglobulin-like domain and carried on a long stalk anchored to the bacterial outer membrane. Possible roles of this unusual host-pathogen interaction include avoidance of clearance from the intestine by secretory IgA. © 2018 Barlow.

Albanian violets of the section Melanium, their morphological variability, genetic similarity and their adaptations to serpentine or chalk soils.

PubMed

Słomka, Aneta; Godzik, Barbara; Szarek-Łukaszewska, Grażyna; Shuka, Lulëzim; Hoef-Emden, Kerstin; Bothe, Hermann

2015-02-01

Violets of the section Melanium from Albanian serpentine and chalk soils were examined for their taxonomic affiliations, their ability to accumulate heavy metals and their colonization by arbuscular mycorrhizal fungi (AMF). The sequence analysis of the ITS1-5.8S rDNA-ITS2 region showed that all the sampled six Albanian violets grouped between Viola lutea and Viola arvensis, but not with Viola tricolor. The fine resolution of the ITS sequences was not sufficient for a further delimitation of the Albanian violets within the V. lutea-V. arvensis clade. Therefore, the Albanian violets were classified by a set of morphological characters. Viola albanica, Viola dukadjinica and Viola raunsiensis from serpentine soils as well as Viola aetolica from a chalk meadow were unambiguously identified, whereas the samples of Viola macedonica showed high morphological variability. All the violets, in both roots and shoots contained less than or similar levels of heavy metals as their harboring soils, indicating that they were heavy metal excluders. All the violets were strongly colonized by AMF with the remarkable exception of V. albanica. This violet lived as a scree creeper in shallow serpentine soil where the concentration of heavy metals was high but those of P, K and N were scarce. Copyright © 2014 Elsevier GmbH. All rights reserved.

Search for Supersymmetry in Hadronic Final States

NASA Astrophysics Data System (ADS)

Mulholland, Troy

We present a search for supersymmetry in purely hadronic final states with large missing transverse momentum using data collected by the CMS detector at the CERN LHC. The data were produced in proton-proton collisions with center-of-mass energy of 13 TeV and correspond to an integrated luminosity of 35.9 fb -1. Data are analyzed with variables defined in terms of jet multiplicity, bottom quark tagged jet multiplicity, the scalar sum of jet transverse momentum, the magnitude of the vector sum of jet transverse momentum, and angular separation between jets and the vector sum of transverse momentum. We perform the search on the data using two analysis techniques: a boosted decision tree trained on simulated data using the above variables as features and a four-dimensional fit with rectangular search regions. In both analyses, standard model background estimations are derived from data-driven techniques and the signal data are separated into exclusive search regions. The observed yields in the search regions agree with background expectations. We derive upper limits on the production cross sections of pairs of gluinos and pairs of top squarks at 95% confidence using simplified models with the lightest supersymmetric particle assumed to be a weakly interacting neutralino. Gluinos as heavy as 1960 GeV and top squarks as heavy as 980 GeV are excluded. The limits significantly extend the exclusions obtained from previous results.

Improving the accuracy of vehicle emissions profiles for urban transportation greenhouse gas and air pollution inventories.

PubMed

Reyna, Janet L; Chester, Mikhail V; Ahn, Soyoung; Fraser, Andrew M

2015-01-06

Metropolitan greenhouse gas and air emissions inventories can better account for the variability in vehicle movement, fleet composition, and infrastructure that exists within and between regions, to develop more accurate information for environmental goals. With emerging access to high quality data, new methods are needed for informing transportation emissions assessment practitioners of the relevant vehicle and infrastructure characteristics that should be prioritized in modeling to improve the accuracy of inventories. The sensitivity of light and heavy-duty vehicle greenhouse gas (GHG) and conventional air pollutant (CAP) emissions to speed, weight, age, and roadway gradient are examined with second-by-second velocity profiles on freeway and arterial roads under free-flow and congestion scenarios. By creating upper and lower bounds for each factor, the potential variability which could exist in transportation emissions assessments is estimated. When comparing the effects of changes in these characteristics across U.S. cities against average characteristics of the U.S. fleet and infrastructure, significant variability in emissions is found to exist. GHGs from light-duty vehicles could vary by -2%-11% and CAP by -47%-228% when compared to the baseline. For heavy-duty vehicles, the variability is -21%-55% and -32%-174%, respectively. The results show that cities should more aggressively pursue the integration of emerging big data into regional transportation emissions modeling, and the integration of these data is likely to impact GHG and CAP inventories and how aggressively policies should be implemented to meet reductions. A web-tool is developed to aide cities in improving emissions uncertainty.

Come rain or shine: Multi-model Projections of Climate Hazards affecting Transportation in the South Central United States

NASA Astrophysics Data System (ADS)

Mullens, E.; Mcpherson, R. A.

2016-12-01

This work develops detailed trends in climate hazards affecting the Department of Transportation's Region 6, in the South Central U.S. Firstly, a survey was developed to gather information regarding weather and climate hazards in the region from the transportation community, identifying key phenomena and thresholds to evaluate. Statistically downscaled datasets were obtained from the Multivariate Adaptive Constructed Analogues (MACA) project, and the Asynchronous Regional Regression Model (ARRM), for a total of 21 model projections, two coupled model intercomparisons (CMIP3, and CMIP5), and four emissions pathways (A1Fi, B1, RCP8.5, RCP4.5). Specific hazards investigated include winter weather, freeze-thaw cycles, hot and cold extremes, and heavy precipitation. Projections for each of these variables were calculated for the region, utilizing spatial mapping, and time series analysis at the climate division level. The results indicate that cold-season phenomena such as winter weather, freeze-thaw, and cold extremes, decrease in intensity and frequency, particularly with the higher emissions pathways. Nonetheless, specific model and downscaling method yields variability in magnitudes, with the most notable decreasing trends late in the 21st century. Hot days show a pronounced increase, particularly with greater emissions, producing annual mean 100oF day frequencies by late 21st century analogous to the 2011 heatwave over the central Southern Plains. Heavy precipitation, evidenced by return period estimates and counts-over-thresholds, also show notable increasing trends, particularly between the recent past through mid-21st Century. Conversely, mean precipitation does not show significant trends and is regionally variable. Precipitation hazards (e.g., winter weather, extremes) diverge between downscaling methods and their associated model samples much more substantially than temperature, suggesting that the choice of global model and downscaled data is particularly important when considering region-specific impacts for precipitation. These results are intended to inform region transportation professionals of the susceptibility of the area to climate extremes, and to be a resource for assessing and incorporating changing risk probabilities into their planning processes.

SOURCE REGIONS OF THE INTERPLANETARY MAGNETIC FIELD AND VARIABILITY IN HEAVY-ION ELEMENTAL COMPOSITION IN GRADUAL SOLAR ENERGETIC PARTICLE EVENTS

DOE Office of Scientific and Technical Information (OSTI.GOV)

Ko, Yuan-Kuen; Wang, Yi-Ming; Tylka, Allan J.

Gradual solar energetic particle (SEP) events are those in which ions are accelerated to their observed energies by interactions with a shock driven by a fast coronal mass ejection (CME). Previous studies have shown that much of the observed event-to-event variability can be understood in terms of shock speed and evolution in the shock-normal angle. However, an equally important factor, particularly for the elemental composition, is the origin of the suprathermal seed particles upon which the shock acts. To tackle this issue, we (1) use observed solar-wind speed, magnetograms, and the potential-field source-surface model to map the Sun-L1 interplanetary magneticmore » field (IMF) line back to its source region on the Sun at the time of the SEP observations and (2) then look for a correlation between SEP composition (as measured by Wind and Advanced Composition Explorer at ∼2-30 MeV nucleon{sup –1}) and characteristics of the identified IMF source regions. The study is based on 24 SEP events, identified as a statistically significant increase in ∼20 MeV protons and occurring in 1998 and 2003-2006, when the rate of newly emergent solar magnetic flux and CMEs was lower than in solar-maximum years, and the field-line tracing is therefore more likely to be successful. We find that the gradual SEP Fe/O is correlated with the field strength at the IMF source, with the largest enhancements occurring when the footpoint field is strong due to the nearby presence of an active region (AR). In these cases, other elemental ratios show a strong charge-to-mass (q/M) ordering (at least on average), similar to that found in impulsive events. Such results lead us to suggest that magnetic reconnection in footpoint regions near ARs bias the heavy-ion composition of suprathermal seed ions by processes qualitatively similar to those that produce larger heavy-ion enhancements in impulsive SEP events. To address potential technical concerns about our analysis, we also discuss efforts to exclude impulsive SEP events from our event sample.« less

Generation of human scFv antibody libraries: PCR amplification and assembly of light- and heavy-chain coding sequences.

PubMed

Andris-Widhopf, Jennifer; Steinberger, Peter; Fuller, Roberta; Rader, Christoph; Barbas, Carlos F

2011-09-01

The development of therapeutic antibodies for use in the treatment of human diseases has long been a goal for many researchers in the antibody field. One way to obtain these antibodies is through phage-display libraries constructed from human lymphocytes. This protocol describes the construction of human scFv (single chain antibody fragment) libraries using a short linker (GGSSRSS) or a long linker (GGSSRSSSSGGGGSGGGG). In this method, the individual rearranged heavy- and light-chain variable regions are amplified separately and are linked through a series of overlap polymerase chain reaction (PCR) steps to give the final scFv products that are used for cloning.

Antibody repertoire development in camelids.

PubMed

De Genst, Erwin; Saerens, Dirk; Muyldermans, Serge; Conrath, Katja

2006-01-01

The humoral immune response of the Camelidae is unique as these animals are the only known mammals that seem to possess functional homodimeric heavy-chain antibodies besides the classical heteromeric antibodies composed of heavy (H) and light (L) chains. By definition, the heavy-chain antibodies lack the L-chain, and it was noticed that their H-chain is devoid of the typical first constant domain (CH1) and contains a dedicated variable domain, referred to as VHH. The VHH exon is assembled from separate V-D-J gene segments. The recombined VHH region is subjected to somatic hypermutations; however, the timing and actual mechanism of the class switch from mu to the dedicated gamma-isotype remains elusive. Interestingly, antigen-specific VHHs are easily retrieved after panning of a phage-displayed rearranged V-gene pool cloned from an immunised camelid. These single-domain antigen binding entities possess a number of biophysical properties that offer particular advantages in various medical and biotechnological applications.

Large‐scale heavy precipitation over central Europe and the role of atmospheric cyclone track types

PubMed Central

Lexer, Annemarie; Homann, Markus; Blöschl, Günter

2017-01-01

ABSTRACT Precipitation patterns over Europe are largely controlled by atmospheric cyclones embedded in the general circulation of the mid‐latitudes. This study evaluates the climatologic features of precipitation for selected regions in central Europe with respect to cyclone track types for 1959–2015, focusing on large‐scale heavy precipitation. The analysis suggests that each of the cyclone track types is connected to a specific pattern of the upper level atmospheric flow, usually characterized by a major trough located over Europe. A dominant upper level cut‐off low (COL) is found over Europe for strong continental (CON) and van Bebber's type (Vb) cyclones which move from the east and southeast into central Europe. Strong Vb cyclones revealed the longest residence times, mainly due to circular propagation paths. The central European cyclone precipitation climate can largely be explained by seasonal track‐type frequency and cyclone intensity; however, additional factors are needed to explain a secondary precipitation maximum in early autumn. The occurrence of large precipitation totals for track events is strongly related to the track type and the region, with the highest value of 45% of all Vb cyclones connected to heavy precipitation in summer over the Czech Republic and eastern Austria. In western Germany, Atlantic winter cyclones are most relevant for heavy precipitation. The analysis of the top 50 precipitation events revealed an outstanding heavy precipitation period from 2006 to 2011 in the Czech Republic, but no gradual long‐term change. The findings help better understand spatio‐temporal variability of heavy precipitation in the context of floods and may be used for evaluating climate models.

An appraisal of biological responses and network of environmental interactions in non-mining and mining impacted coastal waters.

PubMed

Fernandes, Christabelle E G; Malik, Ashish; Jineesh, V K; Fernandes, Sheryl O; Das, Anindita; Pandey, Sunita S; Kanolkar, Geeta; Sujith, P P; Velip, Dhillan M; Shaikh, Shagufta; Helekar, Samita; Gonsalves, Maria Judith; Nair, Shanta; LokaBharathi, P A

2015-08-01

The coastal waters of Goa and Ratnagiri lying on the West coast of India are influenced by terrestrial influx. However, Goa is influenced anthropogenically by iron-ore mining, while Ratnagiri is influenced by deposition of heavy minerals containing iron brought from the hinterlands. We hypothesize that there could be a shift in biological response along with changes in network of interactions between environmental and biological variables in these mining and non-mining impacted regions, lying 160 nmi apart. Biological and environmental parameters were analyzed during pre-monsoon season. Except silicates, the measured parameters were higher at Goa and related significantly, suggesting bacteria centric, detritus-driven region. At Ratnagiri, phytoplankton biomass related positively with silicate suggesting a region dominated by primary producers. This dominance perhaps got reflected as a higher tertiary yield. Thus, even though the regions are geographically proximate, the different biological response could be attributed to the differences in the web of interactions between the measured variables.

Relative stabilities of IgG1 and IgG4 Fab domains: Influence of the light–heavy interchain disulfide bond architecture

PubMed Central

Heads, James T; Adams, Ralph; D'Hooghe, Lena E; Page, Matt J T; Humphreys, David P; Popplewell, Andrew G; Lawson, Alastair D; Henry, Alistair J

2012-01-01

The stability of therapeutic antibodies is a prime pharmaceutical concern. In this work we examined thermal stability differences between human IgG1 and IgG4 Fab domains containing the same variable regions using the thermofluor assay. It was found that the IgG1 Fab domain is up to 11°C more stable than the IgG4 Fab domain containing the same variable region. We investigated the cause of this difference with the aim of developing a molecule with the enhanced stability of the IgG1 Fab and the biological properties of an IgG4 Fc. We found that replacing the seven residues, which differ between IgG1 CH1 and IgG4 CH1 domains, while retaining the native IgG1 light-heavy interchain disulfide (L–H) bond, did not affect thermal stability. Introducing the IgG1 type L–H interchain disulfide bond (DSB) into the IgG4 Fab resulted in an increase in thermal stability to levels observed in the IgG1 Fab with the same variable region. Conversely, replacement of the IgG1 L–H interchain DSB with the IgG4 type L–H interchain DSB reduced the thermal stability. We utilized the increased stability of the IgG1 Fab and designed a hybrid antibody with an IgG1 CH1 linked to an IgG4 Fc via an IgG1 hinge. This construct has the expected biophysical properties of both the IgG4 Fc and IgG1 Fab domains and may therefore be a pharmaceutically relevant format. PMID:22761163

The identification of 'hotspots' of heavy metal pollution in soil-rice systems at a regional scale in eastern China.

PubMed

Li, Wanlu; Xu, Binbin; Song, Qiujin; Liu, Xingmei; Xu, Jianming; Brookes, Philip C

2014-02-15

Chinese agricultural soils and crops are suffering from increasing damage from heavy metals, which are introduced from various pollution sources including agriculture, traffic, mining and especially the flourishing private metal recycling industry. In this study, 219 pairs of rice grain and corresponding soil samples were collected from Wenling in Zhejiang Province to identify the spatial relationship and pollution hotspots of Cd, Cu, Ni and Zn in the soil-rice system. The mean soil concentrations of heavy metals were 0.316 mg kg(-1) for Cd, 47.3 mg kg(-1) for Cu, 31.7 mg kg(-1) for Ni and 131 mg kg(-1) for Zn, and the metal concentrations in rice grain were 0.132 mg kg(-1) for Cd, 2.46 mg kg(-1) for Cu, 0.223 mg kg(-1) for Ni and 17.4 mg kg(-1) for Zn. The coefficient of variability (CV) of soil Cd, Cu and rice Cd were 147%, 146% and 180%, respectively, indicating an extensive variability. While the CVs of other metals ranged from 23.4% to 84.3% with a moderate variability. Kriging interpolation procedure and the Local Moran's I index detected the locations of pollution hotspots of these four metals. Cd and Cu had a very similar spatial pattern, with contamination hotspots located simultaneously in the northwestern part of the study area, and there were obvious hotspots for soil Zn in the north area, while in the northeast for soil Ni. The existence of hotspots may be due to industrialization and other anthropogenic activities. An Enrichment Index (EI) was employed to measure the uptake of heavy metals by rice. The results indicated that the accumulation and availability of heavy metals in the soil-rice system may be influenced by both soil heavy metal concentrations and soil physico-chemical properties. Cross-correlograms quantitatively illustrated that EIs were significantly correlated with soil properties. Soil pH and organic matter were the most important factors controlling the uptake of heavy metals by rice. As results, positive measures should be taken into account to control soil pollution and to curtail metal contamination to the food chain in the areas of Wenling, which were the most polluted by toxic metals. Copyright © 2013 Elsevier B.V. All rights reserved.

Immunoglobulin Heavy Chain Variable Region and Major Histocompatibility Region Genes Are Linked to Induced Graves' Disease in Females From Two Very Large Families of Recombinant Inbred Mice

PubMed Central

Aliesky, Holly; Banuelos, Bianca; Magana, Jessica; Williams, Robert W.; Rapoport, Basil

2014-01-01

Graves' hyperthyroidism is caused by antibodies to the TSH receptor (TSHR) that mimic thyroid stimulation by TSH. Stimulating TSHR antibodies and hyperthyroidism can be induced by immunizing mice with adenovirus expressing the human TSHR A-subunit. Prior analysis of induced Graves' disease in small families of recombinant inbred (RI) female mice demonstrated strong genetic control but did not resolve trait loci for TSHR antibodies or elevated serum T4. We investigated the genetic basis for induced Graves' disease in female mice of two large RI families and combined data with earlier findings to provide phenotypes for 178 genotypes. TSHR antibodies measured by inhibition of TSH binding to its receptor were highly significantly linked in the BXD set to the major histocompatibility region (chromosome 17), consistent with observations in 3 other RI families. In the LXS family, we detected linkage between T4 levels after TSHR-adenovirus immunization and the Ig heavy chain variable region (Igvh, chromosome 12). This observation is a key finding because components of the antigen binding region of Igs determine antibody specificity and have been previously linked to induced thyroid-stimulating antibodies. Data from the LXS family provide the first evidence in mice of a direct link between induced hyperthyroidism and Igvh genes. A role for major histocompatibility genes has now been established for genetic susceptibility to Graves' disease in both humans and mice. Future studies using arrays incorporating variation in the complex human Ig gene locus will be necessary to determine whether Igvh genes are also linked to Graves' disease in humans. PMID:25051451

Regional variability of the frequency distribution of daily precipitation and the synoptic characteristics of heavy precipitation events in present and future climate simulations

NASA Astrophysics Data System (ADS)

DeAngelis, Anthony M.

Changes in the characteristics of daily precipitation in response to global warming may have serious impacts on human life and property. An analysis of precipitation in climate models is performed to evaluate how well the models simulate the present climate and how precipitation may change in the future. Models participating in phase 3 and 5 of the Coupled Model Intercomparison Project (CMIP3 and CMIP5) have substantial biases in their simulation of heavy precipitation intensity over parts of North America during the 20th century. Despite these biases, the large-scale atmospheric circulation accompanying heavy precipitation is either simulated realistically or the strength of the circulation is overestimated. The biases are not related to the large-scale flow in a simple way, pointing toward the importance of other model deficiencies, such as coarse horizontal resolution and convective parameterizations, for the accurate simulation of intense precipitation. Although the models may not sufficiently simulate the intensity of precipitation, their realistic portrayal of the large-scale circulation suggests that projections of future precipitation may be reliable. In the CMIP5 ensemble, the distribution of daily precipitation is projected to undergo substantial changes in response to future atmospheric warming. The regional distribution of these changes was investigated, revealing that dry days and days with heavy-extreme precipitation are projected to increase at the expense of light-moderate precipitation over much of the middle and low latitudes. Such projections have serious implications for future impacts from flood and drought events. In other places, changes in the daily precipitation distribution are characterized by a shift toward either wetter or drier conditions in the future, with heavy-extreme precipitation projected to increase in all but the driest subtropical subsidence regions. Further analysis shows that increases in heavy precipitation in midlatitudes are largely explained by thermodynamics, including increases in atmospheric water vapor. However, in low latitudes and northern high latitudes, changes in vertical velocity accompanying heavy precipitation are also important. The strength of the large-scale atmospheric circulation is projected to change in accordance with vertical velocity in many places, though the circulation patterns, and therefore physical mechanisms that generate heavy precipitation, may remain the same.

The Florida manatee (Trichechus manatus latirostris) immunoglobulin heavy chain suggests the importance of clan III variable segments in repertoire diversity

USGS Publications Warehouse

Breaux, Breanna; Deiss, Thaddeus C.; Chen, Patricia L.; Cruz-Schneider, Maria Paula; Sena, Leonardo; Hunter, Margaret E.; Bonde, Robert K.; Criscitiello, Michael F.

2017-01-01

Manatees are a vulnerable, charismatic sentinel species from the evolutionarily divergent Afrotheria. Manatee health and resistance to infectious disease is of great concern to conservation groups, but little is known about their immune system. To develop manatee-specific tools for monitoring health, we first must have a general knowledge of how the immunoglobulin heavy (IgH) chain locus is organized and transcriptionally expressed. Using the genomic scaffolds of the Florida manatee (Trichechus manatus latirostris), we characterized the potential IgH segmental diversity and constant region isotypic diversity and performed the first Afrotherian repertoire analysis. The Florida manatee has low V(D)J combinatorial diversity (3744 potential combinations) and few constant region isotypes. They also lack clan III V segments, which may have caused reduced VH segment numbers. However, we found productive somatic hypermutation concentrated in the complementarity determining regions. In conclusion, manatees have limited IGHV clan and combinatorial diversity. This suggests that clan III V segments are essential for maintaining IgH locus diversity.

Linkage mapping of a mouse gene, iv, that controls left-right asymmetry of the heart and viscera.

PubMed Central

Brueckner, M; D'Eustachio, P; Horwich, A L

1989-01-01

Inherited single gene defects have been identified in both humans and mice that lead to loss of developmental control over the left-right asymmetry of the heart and viscera. In mice the recessively inherited mutation iv leads to such apparent loss of control over situs: 50% of iv/iv mice exhibit situs inversus and 50% exhibit normal situs. The affected gene product has not been identified in these animals. To study the normal function of iv, we have taken an approach directed to the gene itself. As a first step, we have mapped iv genetically, by examining its segregation in backcrosses with respect to markers defined by restriction fragment length polymorphisms. The iv locus lies 3 centimorgans (cM) from the immunoglobulin heavy-chain constant-region gene complex (Igh-C) on chromosome 12. A multilocus map of the region suggests the gene order centromere-Aat (alpha 1-antitrypsin gene complex)-(11 cM)-iv-(3 cM)-Igh-C-(1 cM)-Igh-V (immunoglobulin heavy-chain variable-region gene complex). Images PMID:2740340

The Florida manatee (Trichechus manatus latirostris) immunoglobulin heavy chain suggests the importance of clan III variable segments in repertoire diversity.

PubMed

Breaux, Breanna; Deiss, Thaddeus C; Chen, Patricia L; Cruz-Schneider, Maria Paula; Sena, Leonardo; Hunter, Margaret E; Bonde, Robert K; Criscitiello, Michael F

2017-07-01

Manatees are a vulnerable, charismatic sentinel species from the evolutionarily divergent Afrotheria. Manatee health and resistance to infectious disease is of great concern to conservation groups, but little is known about their immune system. To develop manatee-specific tools for monitoring health, we first must have a general knowledge of how the immunoglobulin heavy (IgH) chain locus is organized and transcriptionally expressed. Using the genomic scaffolds of the Florida manatee (Trichechus manatus latirostris), we characterized the potential IgH segmental diversity and constant region isotypic diversity and performed the first Afrotherian repertoire analysis. The Florida manatee has low V(D)J combinatorial diversity (3744 potential combinations) and few constant region isotypes. They also lack clan III V segments, which may have caused reduced VH segment numbers. However, we found productive somatic hypermutation concentrated in the complementarity determining regions. In conclusion, manatees have limited IGHV clan and combinatorial diversity. This suggests that clan III V segments are essential for maintaining IgH locus diversity. Copyright © 2017 Elsevier Ltd. All rights reserved.

Several methods to determine heavy metals in the human brain

NASA Astrophysics Data System (ADS)

Andrási, Erzsébet; Igaz, Sarolta; Szoboszlai, Norbert; Farkas, Éva; Ajtony, Zsolt

1999-05-01

The determination of naturally occurring heavy metals in various parts of the human brain is discussed. The patients had no diseases in their central nervous systems (five individuals, mean age 70 years). Twenty brain parts were selected from both hemispheres. The analysis was carried out by graphite furnace atomic absorption spectrometry, inductively coupled plasma atomic emission spectrometry and instrumental neutron activation analysis methods. Accuracy and precision of the applied techniques were tested by using standard reference materials. Two digestion methods were used to dissolve the brain samples for ICP-AES and GF-AAS. One was performed in a Parr-bomb and the second in a microwave oven. The present results show a non-homogeneous distribution of the essential elements (Cu, Fe, Mn, Zn) in normal human brain. Corresponding regions in both hemispheres showed an almost identical concentration of these elements. In the case of toxic elements (Pb, Cd) an average value in different brain regions can not be established because of the high variability of individual data. This study indicates that beside differences in Pb and Cd intake with foods or cigarette smoke inhalation, the main factors of the high inter-individual variability of these element concentrations in human brain parts may be a marked difference in individual elimination or accumulation capabilities.

When at what scale will trends in European mean and heavy precipitation emerge

NASA Astrophysics Data System (ADS)

Maraun, Douglas

2013-04-01

A multi-model ensemble of regional climate projections for Europe is employed to investigate how the time of emergence (TOE) for seasonal sums and maxima of daily precipitation depends on spatial scale. The TOE is redefined for emergence from internal variability only, the spread of the TOE due to imperfect climate model formulation is used as a measure of uncertainty in the TOE itself. Thereby the TOE becomes a fundamentally limiting time scale and translates into a minimum spatial scale on which robust conclusions can be drawn about precipitation trends. Thus also minimum temporal and spatial scales for adaptation planning are given. In northern Europe, positive winter trends in mean and heavy precipitation, in southwestern and southeastern Europe summer trends in mean precipitation emerge already within the next decades. Yet across wide areas, especially for heavy summer precipitation, the local trend emerges only late in the 21st century or later. For precipitation averaged to larger scales, the trend in general emerges earlier. Douglas Maraun, When at what scale will trends in European mean and heavy precipitation emerge? Env. Res. Lett., in press, 2013.

Amino acid sequence of the Fv region of a human monoclonal IgM (protein WEA) with antibody activity against 3,4-pyruvylated galactose in Klebsiella polysaccharides K30 and K33.

PubMed Central

Goñi, F; Frangione, B

1983-01-01

We have determined the amino acid sequence of the Fv [variable heavy (VH) and variable light (VL)] region of a human monoclonal IgM-kappa with antibody activity against 3,4-pyruvylated galactose, isolated from the plasma of patient WEA with Waldenström macroglobulinemia. The VH region has 114 residues, belongs to subgroup III, and has a very short third complementarity-determining region (CDR3), probably due to a small D segment/or an unusual D-J rearrangement (D, diversity; J, joining). The VL region has 108 residues and belongs to subgroup V kappa I. Compared to other members of the human VHIII and V kappa I families, WEA Fv does not appear to have significant differences within the framework residues but has unique CDRs that might be responsible for the particular antibody activity. Another IgM-kappa (GAL), which has an as-yet-undetermined antibody activity, shares a striking homology in V kappa with WEA, including an identical CDR1. PMID:6410398

The 1985 central chile earthquake: a repeat of previous great earthquakes in the region?

PubMed

Comte, D; Eisenberg, A; Lorca, E; Pardo, M; Ponce, L; Saragoni, R; Singh, S K; Suárez, G

1986-07-25

A great earthquake (surface-wave magnitude, 7.8) occurred along the coast of central Chile on 3 March 1985, causing heavy damage to coastal towns. Intense foreshock activity near the epicenter of the main shock occurred for 11 days before the earthquake. The aftershocks of the 1985 earthquake define a rupture area of 170 by 110 square kilometers. The earthquake was forecast on the basis of the nearly constant repeat time (83 +/- 9 years) of great earthquakes in this region. An analysis of previous earthquakes suggests that the rupture lengths of great shocks in the region vary by a factor of about 3. The nearly constant repeat time and variable rupture lengths cannot be reconciled with time- or slip-predictable models of earthquake recurrence. The great earthquakes in the region seem to involve a variable rupture mode and yet, for unknown reasons, remain periodic. Historical data suggest that the region south of the 1985 rupture zone should now be considered a gap of high seismic potential that may rupture in a great earthquake in the next few tens of years.

Molecular imprint of enzyme active site by camel nanobodies: rapid and efficient approach to produce abzymes with alliinase activity.

PubMed

Li, Jiang-Wei; Xia, Lijie; Su, Youhong; Liu, Hongchun; Xia, Xueqing; Lu, Qinxia; Yang, Chunjin; Reheman, Kalbinur

2012-04-20

Screening of inhibitory Ab1 antibodies is a critical step for producing catalytic antibodies in the anti-idiotypic approach. However, the incompatible surface of the active site of the enzyme and the antigen-binding site of heterotetrameric conventional antibodies become the limiting step. Because camelid-derived nanobodies possess the potential to preferentially bind to the active site of enzymes due to their small size and long CDR3, we have developed a novel approach to produce antibodies with alliinase activities by exploiting the molecular mimicry of camel nanobodies. By screening the camelid-derived variable region of the heavy chain cDNA phage display library with alliinase, we obtained an inhibitory nanobody VHHA4 that recognizes the active site. Further screening with VHHA4 from the same variable domain of the heavy chain of a heavy-chain antibody library led to a higher incidence of anti-idiotypic Ab2 abzymes with alliinase activities. One of the abzymes, VHHC10, showed the highest activity that can be inhibited by Ab1 VHHA4 and alliinase competitive inhibitor penicillamine and significantly suppressed the B16 tumor cell growth in the presence of alliin in vitro. The results highlight the feasibility of producing abzymes via anti-idiotypic nanobody approach.

Multiple productive immunoglobulin heavy chain gene rearrangements in chronic lymphocytic leukemia are mostly derived from independent clones

PubMed Central

Plevova, Karla; Francova, Hana Skuhrova; Burckova, Katerina; Brychtova, Yvona; Doubek, Michael; Pavlova, Sarka; Malcikova, Jitka; Mayer, Jiri; Tichy, Boris; Pospisilova, Sarka

2014-01-01

In chronic lymphocytic leukemia, usually a monoclonal disease, multiple productive immunoglobulin heavy chain gene rearrangements are identified sporadically. Prognostication of such cases based on immunoglobulin heavy variable gene mutational status can be problematic, especially if the different rearrangements have discordant mutational status. To gain insight into the possible biological mechanisms underlying the origin of the multiple rearrangements, we performed a comprehensive immunogenetic and immunophenotypic characterization of 31 cases with the multiple rearrangements identified in a cohort of 1147 patients with chronic lymphocytic leukemia. For the majority of cases (25/31), we provide evidence of the co-existence of at least two B lymphocyte clones with a chronic lymphocytic leukemia phenotype. We also identified clonal drifts in serial samples, likely driven by selection forces. More specifically, higher immunoglobulin variable gene identity to germline and longer complementarity determining region 3 were preferred in persistent or newly appearing clones, a phenomenon more pronounced in patients with stereotyped B-cell receptors. Finally, we report that other factors, such as TP53 gene defects and therapy administration, influence clonal selection. Our findings are relevant to clonal evolution in the context of antigen stimulation and transition of monoclonal B-cell lymphocytosis to chronic lymphocytic leukemia. PMID:24038023

A method for apportionment of natural and anthropogenic contributions to heavy metal loadings in the surface soils across large-scale regions.

PubMed

Hu, Yuanan; Cheng, Hefa

2016-07-01

Quantification of the contributions from anthropogenic sources to soil heavy metal loadings on regional scales is challenging because of the heterogeneity of soil parent materials and high variability of anthropogenic inputs, especially for the species that are primarily of lithogenic origin. To this end, we developed a novel method for apportioning the contributions of natural and anthropogenic sources by combining sequential extraction and stochastic modeling, and applied it to investigate the heavy metal pollution in the surface soils of the Pearl River Delta (PRD) in southern China. On the average, 45-86% of Zn, Cu, Pb, and Cd were present in the acid soluble, reducible, and oxidizable fractions of the surface soils, while only 12-24% of Ni, Cr, and As were partitioned in these fractions. The anthropogenic contributions to the heavy metals in the non-residual fractions, even the ones dominated by natural sources, could be identified and quantified by conditional inference trees. Combination of sequential extraction, Kriging interpolation, and stochastic modeling reveals that approximately 10, 39, 6.2, 28, 7.1, 15, and 46% of the As, Cd, Cr, Cu, Ni, Pb, and Zn, respectively, in the surface soils of the PRD were contributed by anthropogenic sources. These results were in general agreements with those obtained through subtraction of regional soil metal background from total loadings, and the soil metal inputs through atmospheric deposition as well. In the non-residual fractions of the surface soils, the anthropogenic contributions to As, Cd, Cr, Cu, Ni, Pb, and Zn, were 48, 42, 50, 51, 49, 24, and 70%, respectively. Copyright © 2016 Elsevier Ltd. All rights reserved.

Parenting style, religiosity, peers, and adolescent heavy drinking.

PubMed

Bahr, Stephen J; Hoffmann, John P

2010-07-01

The purpose of this research was to examine whether authoritative, authoritarian, indulgent, and neglectful parenting styles were associated with adolescent alcohol use and heavy drinking, after controlling for peer use, religiosity, and other relevant variables. Structural equation modeling was used to estimate direct and indirect associations of parenting style with alcohol use and heavy drinking among 4,983 adolescents in Grades 7-12. Adolescents whose parents were authoritative were less likely to drink heavily than adolescents from the other three parenting styles, and they were less likely to have close friends who used alcohol. In addition, religiosity was negatively associated with heavy drinking after controlling for other relevant variables. Authoritative parenting appears to have both direct and indirect associations with the risk of heavy drinking among adolescents. Authoritative parenting, where monitoring and support are above average, might help deter adolescents from heavy alcohol use, even when adolescents have friends who drink. In addition, the data suggest that the adolescent's choice of friends may be an intervening variable that helps explain the negative association between authoritative parenting and adolescent heavy drinking.

Identification of the atmospheric river drivers key on local flood generating mechanism and its sensitivity under the climate change

NASA Astrophysics Data System (ADS)

Lorente-Plazas, Raquel; Mauger, Guillaume; Salathé, Eric; Mitchell, Todd P.

2017-04-01

Flooding is one of the natural hazard that causes the significant economic, ecosystem and human losses every year. Large percentage of floodings in the western of the US caused by heavy precipitation events are associated to atmospheric rivers (ARs). With the warmer climate is expected an increase of saturated water pressure which could increase the intensity and frequency of the ARs. In this work we attend to address two questions: 1) what are the large-scale drivers that promotes differences in ARs promoting heavy precipitation at different locations and 2) how climate change will influence on ARs and extreme precipitation. The methods applied in our analysis consist on a dynamical downscaling using the Weather Research and Forecasting (WRF) model. The target region is the western coastline U.S. on a domain with 12-km grid spacing. Regional climate simulations (RCM) encompass a historical period (1970-2010) and future projections (2020-2060) using NNRP and ECHAM as initial and boundary conditions. Clustering methods are applied to the RCM to identify regions with similar precipitation variability. At each region, the extreme events of precipitation according to 99 percentile are identified and associated to integrated vapor transport (ITV). Results show how heaviest precipitation in each region is associated to different AR patterns. When an AR impacts coastline, the direction and intensity of the IVT determine the areas affected by heavy precipitation. Coastal mountains play a key role intensifying the precipitation in the coastline and avoiding the inland penetration of the IVT. The shape of the atmospheric rivers is related to differences in 500 hPa geopotential between the mean and the extreme precipitation. Areas with heaviest precipitation are located in the interface of Z500 differences.

The 3D Structure of the Immunoglobulin Heavy-Chain Locus: Implications for Long-Range Genomic Interactions

PubMed Central

Jhunjhunwala, Suchit; van Zelm, Menno C.; Peak, Mandy M.; Cutchin, Steve; Riblet, Roy; van Dongen, Jacques J.M.; Grosveld, Frank G.; Knoch, Tobias A.; Murre, Cornelis

2009-01-01

SUMMARY The immunoglobulin heavy-chain (Igh) locus is organized into distinct regions that contain multiple variable (VH), diversity (DH), joining (JH) and constant (CH) coding elements. How the Igh locus is structured in 3D space is unknown. To probe the topography of the Igh locus, spatial distance distributions were determined between 12 genomic markers that span the entire Igh locus. Comparison of the distance distributions to computer simulations of alternative chromatin arrangements predicted that the Igh locus is organized into compartments containing clusters of loops separated by linkers. Trilateration and triple-point angle measurements indicated the mean relative 3D positions of the VH, DH, JH, and CH elements, showed compartmentalization and striking conformational changes involving VH and DH-JH elements during early B cell development. In pro-B cells, the entire repertoire of VH regions (2 Mbp) appeared to have merged and juxtaposed to the DH elements, mechanistically permitting long-range genomic interactions to occur with relatively high frequency. PMID:18423198

Immunoglobulin heavy chain V-D-J gene rearrangement and mutational status in Uruguayan patients with chronic lymphocytic leukemia.

PubMed

Bianchi, Sergio; Moreno, Pilar; Landoni, Ana Inés; Naya, Hugo; Oppezzo, Pablo; Dighiero, Guillermo; Gabús, Raúl; Pritsch, Otto

2010-11-01

B-cell chronic lymphocytic leukemia (CLL) is characterized by the accumulation of long-lived circulating clonal leukemic B-cells, although the etiopathogenesis remains unclear. The incidence of CLL is variable in different regions around the world. While it is the most frequent chronic leukemia in Western countries, it has a low incidence in Asia. In this work we have investigated the immunoglobulin heavy chain gene rearrangements and mutational status in 80 Uruguayan patients with CLL, and compared these results with those obtained in other geographic regions. Our results demonstrate that Uruguayan patients with CLL display an IGHV gene usage which resembles that observed in Mediterranean countries and exhibits certain differences compared with Brazilian and Asian series, as expected, considering the ethnic basis of the Uruguayan population. This suggests that genetic influences could be important in the development and etiopathogenesis of CLL, but larger studies are necessary to substantiate this possibility.

A review of soil heavy metal pollution from industrial and agricultural regions in China: Pollution and risk assessment.

PubMed

Yang, Qianqi; Li, Zhiyuan; Lu, Xiaoning; Duan, Qiannan; Huang, Lei; Bi, Jun

2018-06-14

Soil heavy metal pollution has been becoming serious and widespread in China. To date, there are few studies assessing the nationwide soil heavy metal pollution induced by industrial and agricultural activities in China. This review obtained heavy metal concentrations in soils of 402 industrial sites and 1041 agricultural sites in China throughout the document retrieval. Based on the database, this review assessed soil heavy metal concentration and estimated the ecological and health risks on a national scale. The results revealed that heavy metal pollution and associated risks posed by cadmium (Cd), lead (Pb) and arsenic (As) are more serious. Besides, heavy metal pollution and associated risks in industrial regions are severer than those in agricultural regions, meanwhile, those in southeast China are severer than those in northwest China. It is worth noting that children are more likely to be affected by heavy metal pollution than adults. Based on the assessment results, Cd, Pb and As are determined as the priority control heavy metals; mining areas are the priority control areas compared to other areas in industrial regions; food crop plantations are the priority control areas in agricultural regions; and children are determined as the priority protection population group. This paper provides a comprehensive ecological and health risk assessment on the heavy metals in soils in Chinese industrial and agricultural regions and thus provides insights for the policymakers regarding exposure reduction and management. Copyright © 2018. Published by Elsevier B.V.

[Estimating heavy metal concentrations in topsoil from vegetation reflectance spectra of Hyperion images: A case study of Yushu County, Qinghai, China.

PubMed

Yang, Ling Yu; Gao, Xiao Hong; Zhang, Wei; Shi, Fei Fei; He, Lin Hua; Jia, Wei

2016-06-01

In this study, we explored the feasibility of estimating the soil heavy metal concentrations using the hyperspectral satellite image. The concentration of As, Pb, Zn and Cd elements in 48 topsoil samples collected from the field in Yushu County of the Sanjiangyuan regions was measured in the laboratory. We then extracted 176 vegetation spectral reflectance bands of 48 soil samples as well as five vegetation indices from two Hyperion images. Following that, the partial least squares regression (PLSR) method was employed to estimate the soil heavy metal concentrations using the above two independent sets of Hyperion-derived variables, separately constructed the estimation model between the 176 vegetation spectral reflectance bands and the soil heavy metal concentrations (called the vegetation spectral reflectance-based estimation model), and between the five vegetation indices being used as the independent variable and the soil heavy metal concentrations (called synthetic vegetation index-based estimation model). Using RPD (the ratio of standard deviation from the 4 heavy metals measured values of the validation samples to RMSE) as the validation criteria, the RPDs of As and Pb concentrations from the two models were both less than 1.4, which suggested that both models were incapable of roughly estimating As and Pb concentrations; whereas the RPDs of Zn and Cd were 1.53, 1.46 and 1.46, 1.42, respectively, which implied that both models had the ability for rough estimation of Zn and Cd concentrations. Based on those results, the vegetation spectral-based estimation model was selected to obtain the spatial distribution map of Zn concentration in combination with the Hyperion image. The estimated Zn map showed that the zones with high Zn concentrations were distributed near the provincial road 308, national road 214 and towns, which could be influenced by human activities. Our study proved that the spectral reflectance of Hyperion image was useful in estimating the soil concentrations of Zn and Cd.

¹⁵N, ¹³C and ¹H resonance assignments and secondary structure determination of a variable heavy domain of a heavy chain antibody.

PubMed

Prosser, Christine E; Waters, Lorna C; Muskett, Frederick W; Veverka, Vaclav; Addis, Philip W; Griffin, Laura M; Baker, Terry S; Lawson, Alastair D G; Wernery, Ulrich; Kinne, Jorg; Henry, Alistair J; Taylor, Richard J; Carr, Mark D

2014-04-01

Heavy chain antibodies differ in structure to conventional antibodies lacking both the light chain and the first heavy chain constant domain (CH1). Characteristics of the antigen-binding variable heavy domain of the heavy chain antibody (VHH) including the smaller size, high solubility and stability make them an attractive alternative to more traditional antibody fragments for detailed NMR-based structural analysis. Here we report essentially complete backbone and side chain (15)N, (13)C and (1)H assignments for a free VHH. Analysis of the backbone chemical shift data obtained indicates that the VHH is comprised predominantly of β-sheets corresponding to nearly 60% of the protein backbone.

The heavy ion diffusion region in magnetic reconnection in the Earth's magnetotail

NASA Astrophysics Data System (ADS)

Liu, Y. H.; Mouikis, C. G.; Kistler, L. M.; Wang, S.; Roytershteyn, V.; Karimabadi, H.

2015-05-01

While the plasma in the Earth's magnetotail predominantly consists of protons and electrons, there are times when a significant amount of oxygen is present. When magnetic reconnection occurs, the behavior of these heavy ions can be significantly different from that of the protons, due to their larger gyroradius. In this study, we investigate the heavy ion distribution functions in the reconnection ion diffusion region from a 2.5D three-species particle-in-cell numerical simulation and compare those with Cluster observations from the near-Earth magnetotail. From the simulation results, we find that the heavy ions are demagnetized and accelerated in a larger diffusion region, the heavy ion diffusion region. The ion velocity distribution functions show that, inside the heavy ion diffusion region, heavy ions appear as counterstreaming beams along z in the GSM x-z plane, while drifting in y, carrying cross-tail current. We compare this result with Cluster observations in the vicinity of reconnection regions in the near-Earth magnetotail and find that the simulation predictions are consistent with the observed ion distribution functions in the ion diffusion region, as well as the inflow, exhaust, and separatrix regions. Based on the simulation and observation results, the presence of a multiscale diffusion region model, for O+ abundant reconnection events in the Earth's magnetotail, is demonstrated. A test particle simulation shows that in the diffusion region, the H+ gains energy mainly through Ex, while the O+ energy gain comes equally from Ex and Ey.

High-Resolution Subtropical Summer Precipitation Derived from Dynamical Downscaling of the NCEP-DOE Reanalysis: How Much Small-Scale Information Is Added by a Regional Model?

NASA Technical Reports Server (NTRS)

Lim, Young-Kwon; Stefanova, Lydia B.; Chan, Steven C.; Schubert, Siegfried D.; OBrien, James J.

2010-01-01

This study assesses the regional-scale summer precipitation produced by the dynamical downscaling of analyzed large-scale fields. The main goal of this study is to investigate how much the regional model adds smaller scale precipitation information that the large-scale fields do not resolve. The modeling region for this study covers the southeastern United States (Florida, Georgia, Alabama, South Carolina, and North Carolina) where the summer climate is subtropical in nature, with a heavy influence of regional-scale convection. The coarse resolution (2.5deg latitude/longitude) large-scale atmospheric variables from the National Center for Environmental Prediction (NCEP)/DOE reanalysis (R2) are downscaled using the NCEP Environmental Climate Prediction Center regional spectral model (RSM) to produce precipitation at 20 km resolution for 16 summer seasons (19902005). The RSM produces realistic details in the regional summer precipitation at 20 km resolution. Compared to R2, the RSM-produced monthly precipitation shows better agreement with observations. There is a reduced wet bias and a more realistic spatial pattern of the precipitation climatology compared with the interpolated R2 values. The root mean square errors of the monthly R2 precipitation are reduced over 93 (1,697) of all the grid points in the five states (1,821). The temporal correlation also improves over 92 (1,675) of all grid points such that the domain-averaged correlation increases from 0.38 (R2) to 0.55 (RSM). The RSM accurately reproduces the first two observed eigenmodes, compared with the R2 product for which the second mode is not properly reproduced. The spatial patterns for wet versus dry summer years are also successfully simulated in RSM. For shorter time scales, the RSM resolves heavy rainfall events and their frequency better than R2. Correlation and categorical classification (above/near/below average) for the monthly frequency of heavy precipitation days is also significantly improved by the RSM.

Partitioning into hazard subregions for regional peaks-over-threshold modeling of heavy precipitation

NASA Astrophysics Data System (ADS)

Carreau, J.; Naveau, P.; Neppel, L.

2017-05-01

The French Mediterranean is subject to intense precipitation events occurring mostly in autumn. These can potentially cause flash floods, the main natural danger in the area. The distribution of these events follows specific spatial patterns, i.e., some sites are more likely to be affected than others. The peaks-over-threshold approach consists in modeling extremes, such as heavy precipitation, by the generalized Pareto (GP) distribution. The shape parameter of the GP controls the probability of extreme events and can be related to the hazard level of a given site. When interpolating across a region, the shape parameter should reproduce the observed spatial patterns of the probability of heavy precipitation. However, the shape parameter estimators have high uncertainty which might hide the underlying spatial variability. As a compromise, we choose to let the shape parameter vary in a moderate fashion. More precisely, we assume that the region of interest can be partitioned into subregions with constant hazard level. We formalize the model as a conditional mixture of GP distributions. We develop a two-step inference strategy based on probability weighted moments and put forward a cross-validation procedure to select the number of subregions. A synthetic data study reveals that the inference strategy is consistent and not very sensitive to the selected number of subregions. An application on daily precipitation data from the French Mediterranean shows that the conditional mixture of GPs outperforms two interpolation approaches (with constant or smoothly varying shape parameter).

When will trends in European mean and heavy daily precipitation emerge?

NASA Astrophysics Data System (ADS)

Maraun, Douglas

2013-03-01

A multi-model ensemble of regional climate projections for Europe is employed to investigate how the time of emergence (TOE) for seasonal sums and maxima of daily precipitation depends on spatial scale. The TOE is redefined for emergence from internal variability only; the spread of the TOE due to imperfect climate model formulation is used as a measure of uncertainty in the TOE itself. Thereby, the TOE becomes a fundamentally limiting timescale and translates into a minimum spatial scale on which robust conclusions can be drawn about precipitation trends. Thus, minimum temporal and spatial scales for adaptation planning are also given. In northern Europe, positive winter trends in mean and heavy precipitation, and in southwestern and southeastern Europe, summer trends in mean precipitation already emerge within the next few decades. However, across wide areas, especially for heavy summer precipitation, the local trend emerges only late in the 21st century or later. For precipitation averaged to larger scales, the trend, in general, emerges earlier.

Comparison of llama VH sequences from conventional and heavy chain antibodies.

PubMed

Vu, K B; Ghahroudi, M A; Wyns, L; Muyldermans, S

1997-01-01

Forty different PCR clones encoding a llama variable heavy chain domain were analysed. The majority of these clones are derived from heavy-chain antibody cDNA in which the entire CH1 exon is absent. It appears from the amino acid within the VHH framework 1 and 3 that all the llama clones belong to the VH III family. However, the individual llama VHH sequences differ more substantially from each other than expected for members of the same family. Several remarkable amino acid substitutions in the framework 2 hinder the proper association of the VL. However, they lay the foundation for the secretion from the endoplasmic reticulum and good solubility behaviour of llama H2 antibodies. The repertoire of the llama VHHs may be extensive due to the presence of a long CDR3-loop, often constrained by a disulfide bridge and the occurrence of H1 and H2 loop conformations not yet encountered in mice or human VHs. The variability plot of the amino acids in the VHH shows that the first hypervariable region coincides with the structural H1 loop in contrast to the situation found in mice and man where the CDR1 and H1 are slightly offset. We propose that the amino acids of the llama H1 loop participate actively in the antigen binding. All these observations are characteristic for the llama VHHs of the homodimeric heavy-chain H2 antibodies, but are not maintained in the llama clones from conventional heterotetrameric H2L2 immunoglobulins.

Impacts of Climate Policy on Regional Air Quality, Health, and Air Quality Regulatory Procedures

NASA Astrophysics Data System (ADS)

Thompson, T. M.; Selin, N. E.

2011-12-01

Both the changing climate, and the policy implemented to address climate change can impact regional air quality. We evaluate the impacts of potential selected climate policies on modeled regional air quality with respect to national pollution standards, human health and the sensitivity of health uncertainty ranges. To assess changes in air quality due to climate policy, we couple output from a regional computable general equilibrium economic model (the US Regional Energy Policy [USREP] model), with a regional air quality model (the Comprehensive Air Quality Model with Extensions [CAMx]). USREP uses economic variables to determine how potential future U.S. climate policy would change emissions of regional pollutants (CO, VOC, NOx, SO2, NH3, black carbon, and organic carbon) from ten emissions-heavy sectors of the economy (electricity, coal, gas, crude oil, refined oil, energy intensive industry, other industry, service, agriculture, and transportation [light duty and heavy duty]). Changes in emissions are then modeled using CAMx to determine the impact on air quality in several cities in the Northeast US. We first calculate the impact of climate policy by using regulatory procedures used to show attainment with National Ambient Air Quality Standards (NAAQS) for ozone and particulate matter. Building on previous work, we compare those results with the calculated results and uncertainties associated with human health impacts due to climate policy. This work addresses a potential disconnect between NAAQS regulatory procedures and the cost/benefit analysis required for and by the Clean Air Act.

Deep inelastic scattering of leptons from nuclear targets and the BFKL Pomeron

NASA Astrophysics Data System (ADS)

Bialas, Andrzej; Czyz, Wieslaw; Florkowski, Wojciech

1997-06-01

We calculate shadowing in the process of deep inelastic interactions of leptons with nuclei in the perturbative regime of QCD. We find appreciable shadowing for heavy nuclei (e.g., Pb) in the region of a small Bjorken scaling variable 10-5<=x<=10-3. This shadowing depends weakly on Q2, but it may be strongly influenced, especially at x>=10-3, by the existence of real parts of the forward scattering amplitudes.

Genome complexity in the coelacanth is reflected in its adaptive immune system

USGS Publications Warehouse

Saha, Nil Ratan; Ota, Tatsuya; Litman, Gary W.; Hansen, John; Parra, Zuly; Hsu, Ellen; Buonocore, Francesco; Canapa, Adriana; Cheng, Jan-Fang; Amemiya, Chris T.

2014-01-01

We have analyzed the available genome and transcriptome resources from the coelacanth in order to characterize genes involved in adaptive immunity. Two highly distinctive IgW-encoding loci have been identified that exhibit a unique genomic organization, including a multiplicity of tandemly repeated constant region exons. The overall organization of the IgW loci precludes typical heavy chain class switching. A locus encoding IgM could not be identified either computationally or by using several different experimental strategies. Four distinct sets of genes encoding Ig light chains were identified. This includes a variant sigma-type Ig light chain previously identified only in cartilaginous fishes and which is now provisionally denoted sigma-2. Genes encoding α/β and γ/δ T-cell receptors, and CD3, CD4, and CD8 co-receptors also were characterized. Ig heavy chain variable region genes and TCR components are interspersed within the TCR α/δ locus; this organization previously was reported only in tetrapods and raises questions regarding evolution and functional cooption of genes encoding variable regions. The composition, organization and syntenic conservation of the major histocompatibility complex locus have been characterized. We also identified large numbers of genes encoding cytokines and their receptors, and other genes associated with adaptive immunity. In terms of sequence identity and organization, the adaptive immune genes of the coelacanth more closely resemble orthologous genes in tetrapods than those in teleost fishes, consistent with current phylogenomic interpretations. Overall, the work reported described herein highlights the complexity inherent in the coelacanth genome and provides a rich catalog of immune genes for future investigations.

Simultaneous electrodialytic removal of PAH, PCB, TBT and heavy metals from sediments.

PubMed

Pedersen, Kristine B; Lejon, Tore; Jensen, Pernille E; Ottosen, Lisbeth M

2017-08-01

Contaminated sediments are remediated in order to protect human health and the environment, with the additional benefit of using the treated sediments for other activities. Common for many polluted sediments is the contamination with several different pollutants, making remediation challenging with the need of different remedial actions for each pollutant. In this study, electrodialytic remediation (EDR) of sediments was found effective for simultaneous removal of heavy metals and organic pollutants for sediments from Arctic regions - Sisimiut in Greenland and Hammerfest in Norway. The influence of sediment properties and experimental settings on the remediation process was studied by employing multivariate analysis. The importance of the variables studied varied with the pollutant and based on these results it was possible to assess removal processes for the different pollutants. Desorption was found to be important for the removal of heavy metals and TBT, while photolysis was significant for removal of PAH, PCB and TBT. In addition, dechlorination was found to be important for the removal of PCB. The highest removal efficiencies were found for heavy metals, TBT and PCB (>40%) and lower removal efficiencies for PAH (<35%). Copyright © 2017 Elsevier Ltd. All rights reserved.

Toward a systematic design theory for silicon solar cells using optimization techniques

NASA Technical Reports Server (NTRS)

Misiakos, K.; Lindholm, F. A.

1986-01-01

This work is a first detailed attempt to systematize the design of silicon solar cells. Design principles follow from three theorems. Although the results hold only under low injection conditions in base and emitter regions, they hold for arbitrary doping profiles and include the effects of drift fields, high/low junctions and heavy doping concentrations of donor or acceptor atoms. Several optimal designs are derived from the theorems, one of which involves a three-dimensional morphology in the emitter region. The theorems are derived from a nonlinear differential equation of the Riccati form, the dependent variable of which is a normalized recombination particle current.

Performance of near real-time Global Satellite Mapping of Precipitation estimates during heavy precipitation events over northern China

NASA Astrophysics Data System (ADS)

Chen, Sheng; Hu, Junjun; Zhang, Asi; Min, Chao; Huang, Chaoying; Liang, Zhenqing

2018-02-01

This study assesses the performance of near real-time Global Satellite Mapping of Precipitation (GSMaP_NRT) estimates over northern China, including Beijing and its adjacent regions, during three heavy precipitation events from 21 July 2012 to 2 August 2012. Two additional near real-time satellite-based products, the Climate Prediction Center morphing method (CMORPH) and Precipitation Estimation from Remotely Sensed Information using Artificial Neural Networks-Cloud Classification System (PERSIANN-CCS), were used for parallel comparison with GSMaP_NRT. Gridded gauge observations were used as reference for a performance evaluation with respect to spatiotemporal variability, probability distribution of precipitation rate and volume, and contingency scores. Overall, GSMaP_NRT generally captures the spatiotemporal variability of precipitation and shows promising potential in near real-time mapping applications. GSMaP_NRT misplaced storm centers in all three storms. GSMaP_NRT demonstrated higher skill scores in the first high-impact storm event on 21 July 2015. GSMaP_NRT passive microwave only precipitation can generally capture the pattern of heavy precipitation distributions over flat areas but failed to capture the intensive rain belt over complicated mountainous terrain. The results of this study can be useful to both algorithm developers and the scientific end users, providing a better understanding of strengths and weaknesses to hydrologists using satellite precipitation products.

Soil contamination by heavy metals in the city: a case study of Petach-Tikva, Israel

NASA Astrophysics Data System (ADS)

Sarah, Pariente; Zhevelev, Helena; Ido-Lichtman, Orna

2017-04-01

Heavy metals are among the most important pollutants which are affected by human activities. These pollutants impact both the natural and urban ecosystems. In the latter they are associated with the human health of the residents. The general aim of the study is to investigate the spatial variability of soil heavy metals in the city of Petach-Tikva. We asked if and to what extent the urban structure determines the spatial pattern of soil contamination. Urban structure in this study refers to the morphology of neighborhoods (density and height of buildings), the industrial area location and the roads system. It includes three main and industrial areas in the margins of the city. The city is also subjected to heavy traffic and contains different types of neighborhood morphology. To promote the above aim a preliminary study was conducted in 2016. Soil sampling was carried out along a strip, running from the Northwest industrial region of the city to the residential region in the center. Soil samples were randomly taken, from 0-5 cm, from industrial, near high traffic roads and between buildings areas. Each was analyzed for three heavy metals (Pb, Zn, Cu) commonly associated with industry and traffic emissions. Primary results show that for all the city studied areas the range values of Cu Zn and Pb concentrations were 1800, 1270 and 150 ppm, respectively, meaning high spatial variability of the heavy metals. In the soil of the industrial area the averages and the maximum values of Pb, Zn, and Cu concentrations were 76, 353 and 500 ppm and 153, 1286 and 1847 ppm, respectively. In the soil between buildings the averages were 20, 78 and 13 ppm and the maximum values reached 38, 165 and 37 ppm for Pb, Zn, and Cu, respectively. In the soil near roads the averages were 39, 120 and 214 ppm, and the maximum values were 153, 477 and 74 ppm for Pb, Zn, and Cu, respectively. These results indicate that the city industry has the greatest effect on soil pollution. Within the city neighborhoods the traffic effect on soil contamination was more pronounced in areas close to the roads with respect to the areas far from them. Some of soil sampling points showed heavy metals contents, which were higher than the values permitted by the guidelines of the Israeli EPM. These hot spots can be attributed to combined contamination factors or to high intensity of a single human activity or to low soil sheltering. The preliminary study leads to the conclusion that under the industry and traffic that prevailed in the city soil contamination increases in the vicinity of the residential area. The effect of neighborhood morphology is still under analysis.

A Fiji multi-coral δ18O composite approach to obtaining a more accurate reconstruction of the last two-centuries of the ocean-climate variability in the South Pacific Convergence Zone region

NASA Astrophysics Data System (ADS)

Dassié, Emilie P.; Linsley, Braddock K.; Corrège, Thierry; Wu, Henry C.; Lemley, Gavin M.; Howe, Steve; Cabioch, Guy

2014-12-01

The limited availability of oceanographic data in the tropical Pacific Ocean prior to the satellite era makes coral-based climate reconstructions a key tool for extending the instrumental record back in time, thereby providing a much needed test for climate models and projections. We have generated a unique regional network consisting of five Porites coral δ18O time series from different locations in the Fijian archipelago. Our results indicate that using a minimum of three Porites coral δ18O records from Fiji is statistically sufficient to obtain a reliable signal for climate reconstruction, and that application of an approach used in tree ring studies is a suitable tool to determine this number. The coral δ18O composite indicates that while sea surface temperature (SST) variability is the primary driver of seasonal δ18O variability in these Fiji corals, annual average coral δ18O is more closely correlated to sea surface salinity (SSS) as previously reported. Our results highlight the importance of water mass advection in controlling Fiji coral δ18O and salinity variability at interannual and decadal time scales despite being located in the heavy rainfall region of the South Pacific Convergence Zone (SPCZ). The Fiji δ18O composite presents a secular freshening and warming trend since the 1850s coupled with changes in both interannual (IA) and decadal/interdecadal (D/I) variance. The changes in IA and D/I variance suggest a re-organization of climatic variability in the SPCZ region beginning in the late 1800s to period of a more dominant interannual variability, which could correspond to a southeast expansion of the SPCZ.

Feature analysis and primary causes of pre-flood season "cumulative effect" of torrential rain over South China

NASA Astrophysics Data System (ADS)

Chu, Qu-cheng; Wang, Qi-guang; Qiao, Shao-bo; Feng, Guo-lin

2018-01-01

When persistent rainfall occurs frequently over South China, meso-scale and micro-scale synoptic systems persist and expand in space and time and eventually form meso-scale and long-scale weather processes. The accumulation of multiple torrential rain processes is defined as a "cumulative effect" of torrential rain (CETR) event. In this paper, daily reanalysis datasets collected by the National Centers for Environmental Prediction-Department of Energy (NCEP-DOE) during 1979-2014 are used to study the anomalous features and causes of heavy CETR events over South China. The results show that there is a significant difference in the spatial distribution of the heavy CETR events. Based on the center position of the CETR, the middle region displayed middle-region-heavy CETR events while the western region displayed west-region-heavy CETR events. El Niño events in the previous period (December, January, February, March (DJFM)) are major extra-forcing factors of middle-region-heavy CETR events, which is beneficial for the continuous, anomalous Philippine Sea anticyclone and strengthens the West Pacific Subtropical High (WPSH), extending it more westward than normal. The primary water vapor source for precipitation in middle-region-heavy CETR events is the Tropical Western Pacific Ocean. The major extra-forcing factor of a west-region-heavy CETR is the negative anomaly in the southern Tropical Indian Ocean (TIO) during the previous period (DJFM). This factor is beneficial for strengthening the cross-equatorial flow and westerly winds from the Bay of Bengal to the South China Sea (SCS) and early SCS summer monsoon onset. The primary water vapor source of precipitation in the west-region-heavy CETR is the southern TIO.

Spatial variability of heavy metals in estuarine, mangrove and coastal ecosystems along Parangipettai, Southeast coast of India.

PubMed

Sundaramanickam, Arumugam; Shanmugam, Nadanasabesan; Cholan, Shanmugam; Kumaresan, Saravanan; Madeswaran, Perumal; Balasubramanian, Thangavel

2016-11-01

An elaborate survey on the contamination of heavy metals was carried out in surface sediments of different ecosystems such as Vellar-Coleroon estuarine, Pichavaram mangrove and coastal region of Parangipettai, Southeast coast of India. The study was intended since, the coal based thermal power plant and oil refinery plant are proposed to set up along this coast and aquaculture industries and dredging activities are developing. The parameters such as soil texture, pH, total organic carbon (TOC) and heavy metal (Fe, Mn, Cu, Cd, Zn and Ni) concentrations were analyzed for the surface sediments during pre and postmonsoon seasons. Among the metals analyzed, Fe and Mn were found to have dominant as the levels were recorded as 11,804 μg g - 1 and 845.2 μg g - 1 respectively. A significant correlation was observed between total organic carbon (TOC) and heavy metals. In the mangrove ecosystem, the levels of heavy metals found to be maximum indicating that the rich organic matter acts as an efficient binding agent for metals. The overall finding of the present study indicated that the sediments from the entire Vellar-Coleroon estuarine and Pichavaram mangrove ecosystems were found moderately polluted with cadmium metal. The result of cluster analysis indicated disparity in accumulation of heavy metals in sediments of different ecosystems due to the variations in organic matter. The heavy metals were transported from land to coastal through flood during monsoon season reflecting the variations in their levels in different ecosystems at postmonsoon season. Copyright © 2016 Elsevier Ltd. All rights reserved.

Observed heavy precipitation increase confirms theory and early model

NASA Astrophysics Data System (ADS)

Fischer, E. M.; Knutti, R.

2016-12-01

Environmental phenomena are often first observed, and then explained or simulated quantitatively. The complexity and diversity of processes, the range of scales involved, and the lack of first principles to describe many processes make it challenging to predict conditions beyond the ones observed. Here we use the intensification of heavy precipitation as a counterexample, where seemingly complex and potentially computationally intractable processes to first order manifest themselves in simple ways: the intensification of heavy precipitation is now emerging in the observed record across many regions of the world, confirming both theory and a variety of model predictions made decades ago, before robust evidence arose from observations. We here compare heavy precipitation changes over Europe and the contiguous United States across station series and gridded observations, theoretical considerations and multi-model ensembles of GCMs and RCMs. We demonstrate that the observed heavy precipitation intensification aggregated over large areas agrees remarkably well with Clausius-Clapeyron scaling. The observed changes in heavy precipitation are consistent yet somewhat larger than predicted by very coarse resolution GCMs in the 1980s and simulated by the newest generation of GCMs and RCMs. For instance the number of days with very heavy precipitation over Europe has increased by about 45% in observations (years 1981-2013 compared to 1951-1980) and by about 25% in the model average in both GCMs and RCMs, although with substantial spread across models and locations. As the anthropogenic climate signal strengthens, there will be more opportunities to test climate predictions for other variables against observations and across a hierarchy of different models and theoretical concepts. *Fischer, E.M., and R. Knutti, 2016, Observed heavy precipitation increase confirms theory and early models, Nature Climate Change, in press.

Non-stationarities in the relationships of heavy precipitation events in the Mediterranean area and the large-scale circulation in the second half of the 20th century

NASA Astrophysics Data System (ADS)

Merkenschlager, Christian; Hertig, Elke; Jacobeit, Jucundus

2017-04-01

In the context of analyzing temporal varying relationships of heavy precipitation events in the Mediterranean area and associated anomalies of the large-scale circulation, quantile regression models were established. The models were calibrated using different circulation and thermodynamic variables at the 700 hPa and 850 hPa levels as predictors as well as daily precipitation time series at different stations in the Mediterranean area as predictand. Analyses were done for the second half of the 20th century. In the scope of assessing non-stationarities in the predictor-predictand relationships the time series were divided into calibration and validation periods. 100 randomized subsamples were used to calibrate/validate the models under stationary conditions. The highest and lowest skill score of the 100 random samples was used to determine the range of random variability. The model performance under non-stationary conditions was derived from the skill scores of cross-validated running subintervals. If the skill scores of several consecutive years are outside the range of random variability a non-stationarity was declaimed. Particularly the Iberian Peninsula and the Levant region were affected by non-stationarities, the former with significant positive deviations of the skill scores, the latter with significant negative deviations. By means of a case study for the Levant region we determined three possible reasons for non-stationary behavior in the predictor-predictand relationships. The Mediterranean Oscillation as a superordinate system affects the cyclone activity in the Mediterranean basin and the location and intensity of the Cyprus low. Overall, it is demonstrated that non-stationarities have to be taken into account within statistical downscaling model development.

A participatory approach to the study of lifting demands and musculoskeletal symptoms among Hong Kong workers

PubMed Central

Yeung, S; Genaidy, A; Deddens, J; Shoaf, C; Leung, P

2003-01-01

Aims: To investigate the use of a worker based methodology to assess the physical stresses of lifting tasks on effort expended, and to associate this loading with musculoskeletal outcomes (MO). Methods: A cross sectional study was conducted on 217 male manual handling workers from the Hong Kong area. The effects of four lifting variables (weight of load, horizontal distance, twisting angle, and vertical travel distance) on effort were examined using a linguistic approach (that is, characterising variables in descriptors such as "heavy" for weight of load). The numerical interpretations of linguistic descriptors were established. In addition, the associations between on the job effort and MO were investigated for 10 body regions including the spine, and both upper and lower extremities. Results: MO were prevalent in multiple body regions (range 12–58%); effort was significantly associated with MO in 8 of 10 body regions (odds ratios with age adjusted ranged from 1.31 for low back to 1.71 for elbows and forearm). The lifting task variables had significant effects on effort, with the weight of load having twice the effect of other variables; each linguistic descriptor was better described by a range of numerical values rather than a single numerical value. Conclusions: The participatory worker based approach on musculoskeletal outcomes is a promising methodology. Further testing of this approach is recommended. PMID:14504360

Production of novel recombinant single-domain antibodies against tandem repeat region of MUC1 mucin.

PubMed

Rahbarizadeh, F; Rasaee, M J; Forouzandeh Moghadam, M; Allameh, A A; Sadroddiny, E

2004-06-01

Recently, the existence of "heavy-chain" antibody in Camelidae has been described. However, as yet there is no data on the binding of this type of antibody to peptides. In addition, there was not any report of production of single-domain antibodies in two-humped camels (Camelus bactrianus). In the present study, these questions are addressed. We showed the feasibility of immunizing old world camels, cloning the repertoire of the variable domain of their heavy-chain antibodies, panning and selection, leading to the successful identification of minimum-sized antigen binders. Antigen-specific fragments of the heavy-chain IgGs (V(HH)) are of great interest in biotechnology because they are very stable, highly soluble, and react specifically and with high affinity to the antigens. In this study, we immunized two camels (Camelus dromedarius and Camelus bactrianus) with homogenized cancerous tissues, synthetic peptide, and human milk fat globule membrane (HMFG), and generated two V(HH) libraries displayed on phage particles. Some single-domain antibody fragments have been isolated that specifically recognize the tandem repeat region of MUC1. The camels' single-domain V(HH) harbor the original, intact antigen binding site and reacted specifically and with high affinity to the tandem repeat region of MUC1. Indeed soluble, specific antigen binders and good affinities (in the range of 0.2 x 10(9) M(-1) to 0.6 x 10(9) M(-1)) were identified from these libraries. This is the first example of the isolation of camel anti-peptide V(HH) domains.

Determination of some heavy metals (Fe, Cu, Zn and Pb) in blood by total reflection X-ray fluorescence

NASA Astrophysics Data System (ADS)

Bounakhla, M.; Doukkali, A.; Lalaoui, K.; Aguenaou, H.; Mokhtar, N.; Attrassi, B.

2003-05-01

The main purpose of this study is the interaction between nutrition (micronutrients heavy metals: Fe, Zn, Cu) and toxic heavy metals such as Pb in blood of children living in Gharb region of Morocco. This region receives all pollution carried by the Sebou river coming mainly from industrial activities. A rapid and simple analytical procedure was used for the determination of Fe, Cu and Zn trace amounts in blood by total-reflection X-ray fluorescence technique. This method is an energy dispersive XRF technique in a special geometry of primary beam, sample and detector. The sample is deposited on a plane polished surface of a suitable reflector material. It is presented as a few drops (25 μl) from a solution of blood digested in a mixture of HNO3 and H2O2 using a microwaves accelerated reaction system. The accuracy of measurements has been investigated by using certified materials. The concentration of Cu was found to be normal in all samples (\\cong1 ppm) which ruled out any interaction between this element and the others. On the other hand, amounts of Fe and Zn are very variables, suggesting an interaction between Fe and Zn. However, amounts of Pb in blood are inferior to 50 ppb, suggesting that no interaction exist with this metal and micronutrients.

Megakaryocyte and platelet abnormalities in a patient with a W33C mutation in the conserved SH3-like domain of myosin heavy chain IIA.

PubMed

Kahr, Walter H A; Savoia, Anna; Pluthero, Fred G; Li, Ling; Christensen, Hilary; De Rocco, Daniela; Traivaree, Chanchai; Butchart, Sheila E; Curtin, Julie; Stollar, Elliott J; Forman-Kay, Julie D; Blanchette, Victor S

2009-12-01

Heterozygous mutations in MYH9, which encodes non-muscle myosin heavy chain IIA (MHC-IIA), result in autosomal dominant inherited MYH9-related disorders characterised by macro-thrombocytopenia, granulocyte inclusions, variable sensorineural deafness, cataracts and nephritis. MHC-IIA is assembled into a complex consisting of two pairs of light chains and two heavy chains, where the latter contain a neck region, SH3-like, motor and rod domains. We describe a patient with a Trp33Cys missense mutation in the SH3-like domain of MHC-IIA. Abnormal platelet function was observed using platelet aggregometry with the agonists epinephrine and adenosine diphosphate (ADP). Patient granulocytes and megakaryocytes, but not platelets, contained abnormal MHC-IIA inclusions visualised by confocal immunofluorescence or electron microscopy. Megakaryocytes grown in culture were smaller and contained hypolobulated nuclei compared to controls. Bone marrow-derived megakaryocytes revealed a preponderance of immature forms, the presence of structurally diverse inclusion bodies, and frequent emperipolesis as assessed by electron microscopy. Platelets and leukocytes contained indistinguishable amounts of total MHC-IIA determined by immunoblotting. Molecular modelling studies indicated that mutation of Trp33 destabilises the interface between the SH3-like and motor domain of MHC-IIA, which is close to previously described motor domain mutations, implying an important structural and/or functional role for this region in MHC-IIA.

The northward shift of Meiyu rain belt and its possible association with rainfall intensity changes and the Pacific-Japan pattern

NASA Astrophysics Data System (ADS)

Gao, Qingjiu; Sun, Yuting; You, Qinglong

2016-12-01

The meridional location change of Meiyu rain belt and its relationship with the rainfall intensity and circulation background changes for the period 1958-2009 are examined using daily rainfall datasets from 756 stations in China, the 6-h ERA-Interim reanalyses, CRU monthly temperature and daily outgoing long-wave radiation (OLR) data from the US National Oceanic and Atmospheric Administration (NOAA). The results indicate that the Meiyu rain belt experienced a northward shift in the late 1990s in response to global warming. Moreover, the intensity of interannual and day-to-day variability of rainfall within Meiyu period has been increasing in the warming climate. The amplification of the variability within Meiyu period over the northern Yangtze-Huai River Valley (YHRV) is much larger than that of the southern YHRV. The large difference in the trends of variance within the Meiyu period between these two regions induces a spatial varying for different rainfall categories in terms of intensity. More significant positive trends in heavy and extreme heavy rainfall occur over northern YHRV compared with southern YHRV, which is a crucial indicator of changes in the rain band, despite the observation of an increase in heavy and very heavy rain events and a decrease in weak events throughout the entire YHRV. A composite of the atmospheric circulation indicates that intense northward horizontal transport and the convergence of water vapor fluxes are the immediate causes of the rain band shift. Besides, through forcing a northward extended convection over the tropics, the Pacific-Japan (P-J) pattern induces a northward expansion of western Pacific Subtropical High, leading to intensified convergence and enhanced rainfall over Northern YHRV.

Predicting Average Vehicle Speed in Two Lane Highways Considering Weather Condition and Traffic Characteristics

NASA Astrophysics Data System (ADS)

Mirbaha, Babak; Saffarzadeh, Mahmoud; AmirHossein Beheshty, Seyed; Aniran, MirMoosa; Yazdani, Mirbahador; Shirini, Bahram

2017-10-01

Analysis of vehicle speed with different weather condition and traffic characteristics is very effective in traffic planning. Since the weather condition and traffic characteristics vary every day, the prediction of average speed can be useful in traffic management plans. In this study, traffic and weather data for a two-lane highway located in Northwest of Iran were selected for analysis. After merging traffic and weather data, the linear regression model was calibrated for speed prediction using STATA12.1 Statistical and Data Analysis software. Variables like vehicle flow, percentage of heavy vehicles, vehicle flow in opposing lane, percentage of heavy vehicles in opposing lane, rainfall (mm), snowfall and maximum daily wind speed more than 13m/s were found to be significant variables in the model. Results showed that variables of vehicle flow and heavy vehicle percent acquired the positive coefficient that shows, by increasing these variables the average vehicle speed in every weather condition will also increase. Vehicle flow in opposing lane, percentage of heavy vehicle in opposing lane, rainfall amount (mm), snowfall and maximum daily wind speed more than 13m/s acquired the negative coefficient that shows by increasing these variables, the average vehicle speed will decrease.

DOE Office of Scientific and Technical Information (OSTI.GOV)

Ghosh, Subimal; Das, Debasish; Kao, Shih-Chieh

Recent studies disagree on how rainfall extremes over India have changed in space and time over the past half century, as well as on whether the changes observed are due to global warming or regional urbanization. Although a uniform and consistent decrease in moderate rainfall has been reported, a lack of agreement about trends in heavy rainfall may be due in part to differences in the characterization and spatial averaging of extremes. Here we use extreme value theory to examine trends in Indian rainfall over the past half century in the context of long-term, low-frequency variability.We show that when generalizedmore » extreme value theory is applied to annual maximum rainfall over India, no statistically significant spatially uniform trends are observed, in agreement with previous studies using different approaches. Furthermore, our space time regression analysis of the return levels points to increasing spatial variability of rainfall extremes over India. Our findings highlight the need for systematic examination of global versus regional drivers of trends in Indian rainfall extremes, and may help to inform flood hazard preparedness and water resource management in the region.« less

Biogeochemistry of heavy metals in contaminated excessively moistened soils (Analytical review)

NASA Astrophysics Data System (ADS)

Vodyanitskii, Yu. N.; Plekhanova, I. O.

2014-03-01

The biogeochemical behavior of heavy metals in contaminated excessively moistened soils depends on the development of reducing conditions (either moderate or strong). Upon the moderate biogenic reduction, Cr as the metal with variable valence forms low-soluble compounds, which decreases its availability to plants and prevents its penetration into surface- and groundwater. Creation of artificial barriers for Cr fixation on contaminated sites is based on the stimulation of natural metal-reducing bacteria. Arsenic, being a metalloid with a variable valence, is mobilized upon the moderate biogenic reduction. The mobility of siderophilic heavy metals with a constant valence grows under the moderate reducing conditions at the expense of dissolution of iron (hydr)oxides as carriers of these metals. Zinc, which can enter the newly formed goethite lattice, is an exception. Strong reduction processes in organic excessively moist and flooded soils (usually enriched in S) lead to the formation of low-soluble sulfides of heavy elements with both variable (As) and constant (Cu, Ni, Zn, and Pb) valence. On changing aquatic regime in overmoistened soils and their drying, sulfides of heavy metals are oxidized, and previously fixed metals are mobilized.

Effects of color temperatures (kelvin) of led bulbs on blood physiological variables of broilers grown to heavy weights

USDA-ARS?s Scientific Manuscript database

Light-emitting diode (LED) lighting is being used in the poultry industry to reduce energy usage in broiler production facilities. However, limited data are available comparing efficacy of different spectral distribution of LED bulbs on blood physiological variables of broilers grown to heavy weight...

Isolation and characterization of a thermally stable recombinant anti-caffeine heavy-chain antibody fragment.

PubMed

Ladenson, Ruth C; Crimmins, Dan L; Landt, Yvonne; Ladenson, Jack H

2006-07-01

We have isolated and characterized a caffeine-specific, heavy-chain-only antibody fragment (V(HH)) from llama that is capable of being utilized to analyze caffeine in hot and cold beverages. Camelid species (llama and camel) were selected for immunization because of their potential to make heat-stable, heavy-chain-only antibodies. Llamas and camels were immunized with caffeine covalently linked to keyhole limpet hemocyanin, and recombinant antibody techniques were used to create phage displayed libraries of variable region fragments of the heavy-chain antibodies. Caffeine-specific V(HH) fragments were selected by their ability to bind to caffeine/bovine serum albumin (BSA) and confirmed by a positive reaction in a caffeine enzyme-linked immunosorbent assay (caffeine ELISA). One of these V(HH) fragments (VSA2) was expressed as a soluble protein and shown to recover its reactivity after exposure to temperatures up to 90 degrees C. In addition, VSA2 was able to bind caffeine at 70 degrees C. A competition caffeine ELISA was developed for the measurement of caffeine in beverages, and concentrations of caffeine obtained for coffee, Coca-Cola Classic, and Diet Coke agreed well with high performance liquid chromatography (HPLC) determination and literature values. VSA2 showed minimal cross reactivity with structurally related methylxanthines.

Heavy metal assessment using geochemical and statistical tools in the surface sediments of Vembanad Lake, Southwest Coast of India.

PubMed

Selvam, A Paneer; Priya, S Laxmi; Banerjee, Kakolee; Hariharan, G; Purvaja, R; Ramesh, R

2012-10-01

The geochemical distribution and enrichment of ten heavy metals in the surface sediments of Vembanad Lake, southwest coast of India was evaluated. Sediment samples from 47 stations in the Lake were collected during dry and wet seasons in 2008 and examined for heavy metal content (Al, Fe, Mn, Cr, Zn, Ni, Pb, Cu, Co, Cd), organic carbon, and sediment texture. Statistically significant spatial variation was observed among all sediment variables, but negligible significant seasonal variation was observed. Correlation analysis showed that the metal content of sediments was mainly regulated by organic carbon, Fe oxy-hydroxides, and grain size. Principal component analysis was used to reduce the 14 sediment variables into three factors that reveal distinct origins or accumulation mechanisms controlling the chemical composition in the study area. Pollution intensity of the Vembanad Lake was measured using the enrichment factor and the pollution load index. Severe and moderately severe enrichment of Cd and Zn in the north estuary with minor enrichment of Pb and Cr were observed, which reflects the intensity of the anthropogenic inputs related to industrial discharge into this system. The results of pollution load index reveal that the sediment was heavily polluted in northern arm and moderately polluted in the extreme end and port region of the southern arm of the lake. A comparison with sediment quality guideline quotient was also made, indicating that there may be some ecotoxicological risk to benthic organisms in these sediments.

A single amino acid substitution in the variable region of the light chain specifically blocks immunoglobulin secretion.

PubMed Central

Dul, J L; Argon, Y

1990-01-01

Although immunoglobulin light chains are usually secreted in association with heavy chains, free light chains can be secreted by lymphocytes. To identify the structural features of light chains that are essential for their secretion, we mutated a conserved sequence in the variable domain of a lambda I light chain. The effects of the mutations on secretion were assayed by transient expression in COS-1 cells. One mutant (AV60), which replaced Ala-60 with Val, was secreted as efficiently as wild-type lambda I by transfected COS-1 cells. This result was not surprising because secreted lambda II chains contain valine in this position. However, a second lambda I mutant (AV60FS62), which replaced Phe-62 with Ser as well as Ala-60 with Val, was not secreted. This mutant was arrested in the endoplasmic reticulum, as judged by immunofluorescence and by its association with a lumenal endoplasmic reticulum protein, immunoglobulin heavy chain binding protein (BiP). The defect in secretion was not due to gross misfolding of the lambda I chain, since cells cotransfected with AV60FS62 and an immunoglobulin heavy chain gene produced functional antigen-binding antibodies. These assembled IgM molecules were still not secreted. Hence, the replacement of Phe-62 with Ser specifically affects a determinant on the lambda I light chain that is necessary for the intracellular transport of this molecule. Images PMID:2122454

Space-time quantitative source apportionment of soil heavy metal concentration increments.

PubMed

Yang, Yong; Christakos, George; Guo, Mingwu; Xiao, Lu; Huang, Wei

2017-04-01

Assessing the space-time trends and detecting the sources of heavy metal accumulation in soils have important consequences in the prevention and treatment of soil heavy metal pollution. In this study, we collected soil samples in the eastern part of the Qingshan district, Wuhan city, Hubei Province, China, during the period 2010-2014. The Cd, Cu, Pb and Zn concentrations in soils exhibited a significant accumulation during 2010-2014. The spatiotemporal Kriging technique, based on a quantitative characterization of soil heavy metal concentration variations in terms of non-separable variogram models, was employed to estimate the spatiotemporal soil heavy metal distribution in the study region. Our findings showed that the Cd, Cu, and Zn concentrations have an obvious incremental tendency from the southwestern to the central part of the study region. However, the Pb concentrations exhibited an obvious tendency from the northern part to the central part of the region. Then, spatial overlay analysis was used to obtain absolute and relative concentration increments of adjacent 1- or 5-year periods during 2010-2014. The spatial distribution of soil heavy metal concentration increments showed that the larger increments occurred in the center of the study region. Lastly, the principal component analysis combined with the multiple linear regression method were employed to quantify the source apportionment of the soil heavy metal concentration increments in the region. Our results led to the conclusion that the sources of soil heavy metal concentration increments should be ascribed to industry, agriculture and traffic. In particular, 82.5% of soil heavy metal concentration increment during 2010-2014 was ascribed to industrial/agricultural activities sources. Using STK and SOA to obtain the spatial distribution of heavy metal concentration increments in soils. Using PCA-MLR to quantify the source apportionment of soil heavy metal concentration increments. Copyright © 2017 Elsevier Ltd. All rights reserved.

Children with Heavy Prenatal Alcohol Exposure Experience Reduced Control of Isotonic Force

PubMed Central

Nguyen, Tanya T.; Levy, Susan S.; Riley, Edward P.; Thomas, Jennifer D.; Simmons, Roger W.

2013-01-01

Background Heavy prenatal alcohol exposure can result in diverse and extensive damage to the central nervous system, including the cerebellum, basal ganglia, and cerebral cortex. Given that these brain regions are involved in the generation and maintenance of motor force, we predicted that prenatal alcohol exposure would adversely affect this parameter of motor control. We previously reported that children with gestational alcohol exposure experience significant deficits in regulating isometric (i.e., constant) force. The purpose of the present study was to determine if these children exhibit similar deficits when producing isotonic (i.e., graded) force. Methods Children with heavy prenatal alcohol exposure and typically developing children completed a series of isotonic force contractions by exerting force on a load cell to match a criterion target force displayed on a computer monitor. Two levels of target force (5% or 20% of maximum voluntary force) were investigated in combination with varying levels of visual feedback. Results Compared to controls, children with heavy prenatal alcohol exposure generated isotonic force signals that were less accurate, more variable, and less complex in the time domain compared to control children. Specifically, interactions were found between group and visual feedback for response accuracy and signal complexity, suggesting that these children have greater difficulty altering their motor output when visual feedback is low. Conclusions These data suggest that prenatal alcohol exposure produces deficits in regulating isotonic force, which presumably result from alcohol-related damage to developing brain regions involved in motor control. These children will most likely experience difficulty performing basic motor skills and daily functional skills that require coordination of finely graded force. Therapeutic strategies designed to increase feedback and, consequently, facilitate visual-motor integration could improve isotonic force production in these children. PMID:22834891

Development of hi-resolution regional climate scenarios in Japan by statistical downscaling

NASA Astrophysics Data System (ADS)

Dairaku, K.

2016-12-01

Climate information and services for Impacts, Adaptation and Vulnerability (IAV) Assessments are of great concern. To meet with the needs of stakeholders such as local governments, a Japan national project, Social Implementation Program on Climate Change Adaptation Technology (SI-CAT), launched in December 2015. It develops reliable technologies for near-term climate change predictions. Multi-model ensemble regional climate scenarios with 1km horizontal grid-spacing over Japan are developed by using CMIP5 GCMs and a statistical downscaling method to support various municipal adaptation measures appropriate for possible regional climate changes. A statistical downscaling method, Bias Correction Spatial Disaggregation (BCSD), is employed to develop regional climate scenarios based on CMIP5 RCP8.5 five GCMs (MIROC5, MRI-CGCM3, GFDL-CM3, CSIRO-Mk3-6-0, HadGEM2-ES) for the periods of historical climate (1970-2005) and near future climate (2020-2055). Downscaled variables are monthly/daily precipitation and temperature. File format is NetCDF4 (conforming to CF1.6, HDF5 compression). Developed regional climate scenarios will be expanded to meet with needs of stakeholders and interface applications to access and download the data are under developing. Statistical downscaling method is not necessary to well represent locally forced nonlinear phenomena, extreme events such as heavy rain, heavy snow, etc. To complement the statistical method, dynamical downscaling approach is also combined and applied to some specific regions which have needs of stakeholders. The added values of statistical/dynamical downscaling methods compared with parent GCMs are investigated.

Sustainable management for rangelands in a variable climate: evidence and insights from northern Australia.

PubMed

O'Reagain, P J; Scanlan, J C

2013-03-01

Inter-annual rainfall variability is a major challenge to sustainable and productive grazing management on rangelands. In Australia, rainfall variability is particularly pronounced and failure to manage appropriately leads to major economic loss and environmental degradation. Recommended strategies to manage sustainably include stocking at long-term carrying capacity (LTCC) or varying stock numbers with forage availability. These strategies are conceptually simple but difficult to implement, given the scale and spatial heterogeneity of grazing properties and the uncertainty of the climate. This paper presents learnings and insights from northern Australia gained from research and modelling on managing for rainfall variability. A method to objectively estimate LTCC in large, heterogeneous paddocks is discussed, and guidelines and tools to tactically adjust stocking rates are presented. The possible use of seasonal climate forecasts (SCF) in management is also considered. Results from a 13-year grazing trial in Queensland show that constant stocking at LTCC was far more profitable and largely maintained land condition compared with heavy stocking (HSR). Variable stocking (VAR) with or without the use of SCF was marginally more profitable, but income variability was greater and land condition poorer than constant stocking at LTCC. Two commercial scale trials in the Northern Territory with breeder cows highlighted the practical difficulties of variable stocking and provided evidence that heavier pasture utilisation rates depress reproductive performance. Simulation modelling across a range of regions in northern Australia also showed a decline in resource condition and profitability under heavy stocking rates. Modelling further suggested that the relative value of variable v. constant stocking depends on stocking rate and land condition. Importantly, variable stocking may possibly allow slightly higher stocking rates without pasture degradation. Enterprise-level simulations run for breeder herds nevertheless show that poor economic performance can occur under constant stocking and even under variable stocking in some circumstances. Modelling and research results both suggest that a form of constrained flexible stocking should be applied to manage for climate variability. Active adaptive management and research will be required as future climate changes make managing for rainfall variability increasingly challenging.

Local-scale changes in mean and heavy precipitation in Western Europe, climate change or internal variability?

NASA Astrophysics Data System (ADS)

Aalbers, Emma E.; Lenderink, Geert; van Meijgaard, Erik; van den Hurk, Bart J. J. M.

2018-06-01

High-resolution climate information provided by e.g. regional climate models (RCMs) is valuable for exploring the changing weather under global warming, and assessing the local impact of climate change. While there is generally more confidence in the representativeness of simulated processes at higher resolutions, internal variability of the climate system—`noise', intrinsic to the chaotic nature of atmospheric and oceanic processes—is larger at smaller spatial scales as well, limiting the predictability of the climate signal. To quantify the internal variability and robustly estimate the climate signal, large initial-condition ensembles of climate simulations conducted with a single model provide essential information. We analyze a regional downscaling of a 16-member initial-condition ensemble over western Europe and the Alps at 0.11° resolution, similar to the highest resolution EURO-CORDEX simulations. We examine the strength of the forced climate response (signal) in mean and extreme daily precipitation with respect to noise due to internal variability, and find robust small-scale geographical features in the forced response, indicating regional differences in changes in the probability of events. However, individual ensemble members provide only limited information on the forced climate response, even for high levels of global warming. Although the results are based on a single RCM-GCM chain, we believe that they have general value in providing insight in the fraction of the uncertainty in high-resolution climate information that is irreducible, and can assist in the correct interpretation of fine-scale information in multi-model ensembles in terms of a forced response and noise due to internal variability.

Local-scale changes in mean and heavy precipitation in Western Europe, climate change or internal variability?

NASA Astrophysics Data System (ADS)

Aalbers, Emma E.; Lenderink, Geert; van Meijgaard, Erik; van den Hurk, Bart J. J. M.

2017-09-01

High-resolution climate information provided by e.g. regional climate models (RCMs) is valuable for exploring the changing weather under global warming, and assessing the local impact of climate change. While there is generally more confidence in the representativeness of simulated processes at higher resolutions, internal variability of the climate system—`noise', intrinsic to the chaotic nature of atmospheric and oceanic processes—is larger at smaller spatial scales as well, limiting the predictability of the climate signal. To quantify the internal variability and robustly estimate the climate signal, large initial-condition ensembles of climate simulations conducted with a single model provide essential information. We analyze a regional downscaling of a 16-member initial-condition ensemble over western Europe and the Alps at 0.11° resolution, similar to the highest resolution EURO-CORDEX simulations. We examine the strength of the forced climate response (signal) in mean and extreme daily precipitation with respect to noise due to internal variability, and find robust small-scale geographical features in the forced response, indicating regional differences in changes in the probability of events. However, individual ensemble members provide only limited information on the forced climate response, even for high levels of global warming. Although the results are based on a single RCM-GCM chain, we believe that they have general value in providing insight in the fraction of the uncertainty in high-resolution climate information that is irreducible, and can assist in the correct interpretation of fine-scale information in multi-model ensembles in terms of a forced response and noise due to internal variability.

The social location of heavy episodic alcohol consumption in the Victorian population.

PubMed

Matthews, Sharon; Dietze, Paul; Room, Robin; Chikritzhs, Tanya; Jolley, Damien

2013-03-01

To examine heavy episodic drinking across demographic subgroups to identify where heavy episodic drinking is socially located in an Australian state. Cross-sectional survey, 2483 adult Victorians using Computer Assisted Telephone Interviewing. Two measures of heavy drinking were used: (i) heavy episodic drinking-more than five standard drinks at least weekly; and (ii) typically heavy drinking-50% or more of all drinking occasions involving consumption of 5+ standard drinks. Associations between heavy episodic drinking and eight potential sociodemographic correlates (gender, age, education, income, marital status, ethnic origin, religion and geographical remoteness) were examined. There were few significant correlates of heavy episodic drinking apart from gender and age, once gender and age were controlled. Men were more likely to report heavy episodic drinking than women, but this was attenuated in the measure of typically heavy drinking, suggesting that women reporting heavy episodic drinking were more likely to typically drink that much when they drank. Younger people were more likely to report weekly heavy episodic drinking and more likely to report engaging in this pattern on at least half of their drinking occasions, and this was also true for those unmarried or in de facto relationships. Those of Asian background were less likely to report heavy drinking. In multivariate analysis, the remaining sociodemographic variables were largely unrelated to the drinking measures. The study clearly shows that the prevalence of heavy episodic drinking varies particularly across gender and age groups in Victoria. These variations appear to hold across key sociodemographic variables such as income and education. © 2012 Australasian Professional Society on Alcohol and other Drugs.

SAbDab: the structural antibody database

PubMed Central

Dunbar, James; Krawczyk, Konrad; Leem, Jinwoo; Baker, Terry; Fuchs, Angelika; Georges, Guy; Shi, Jiye; Deane, Charlotte M.

2014-01-01

Structural antibody database (SAbDab; http://opig.stats.ox.ac.uk/webapps/sabdab) is an online resource containing all the publicly available antibody structures annotated and presented in a consistent fashion. The data are annotated with several properties including experimental information, gene details, correct heavy and light chain pairings, antigen details and, where available, antibody–antigen binding affinity. The user can select structures, according to these attributes as well as structural properties such as complementarity determining region loop conformation and variable domain orientation. Individual structures, datasets and the complete database can be downloaded. PMID:24214988

Ultraviolet analysis of the peculiar supergiant HD 112374 = HR 4912

NASA Technical Reports Server (NTRS)

Bohm-Vitense, E.; Proffitt, C.

1984-01-01

The ultraviolet energy distribution of the metal-poor supergiant HD 112374 is analyzed based on observations from the International Ultraviolet Explorer (IUE) satellite for the region between 1200 and 2000 A. A discontinuity was found in the UV spectra at 2600 A which confirmed the low-abundance of heavy elements found by Luck et al. (1983). Values for effective temperature and log g in HD112374 were consistent with the star being a very luminous Population II semi-regular variable. The full observational results are presented in a table.

[Study on distribution characteristics and potential ecological risk of soil heavy metals in the Yellow River beach region in Kaifeng City].

PubMed

Zhang, Peng-yan; Qin, Ming-zhou; Chen, Long; Hu, Chang-hui; Zhao, Ya-ping; Dong, Wei-jun

2013-09-01

The distributions, soil environment status and potential ecological risk of heavy metals were studied in beach soil of returning the cropland into Yellow River beach region in Kaifeng by the Nemerows and Håkansons methods. The results showed that (1) as Among the average contents of the five heavy metals Pb, Cr, Hg, As and Cd, the highest was the average content of Cr, and the lowest was the average content of Pb and Hg. In addition to Hg, the coefficients of variation of other heavy metals were relatively small, indicating that the content of heavy metals was quite different at different sites, and to some extent, relecting that Hg, As and Pb were the major elements polluting the soil, among which, Pb pollution was the pollution with universality. There was little difference in the contents of Cr and Cd from village to village the coefficient of variation was small, and the contents were below the national standard level. (2) There was significant difference in the spatial distribution of soil heavy metal elements in the upper, the middle and lower sections of the study area. The upper section was clean, the middle section was slightly polluted, and the lower section was enriched with pollutants. (3) The distribution of heavy metals in the beach region inside and outside the levees of Yellow River was closely related to the distribution of the residential regions. In the upper section of the beach region (southwest), the population was large and the contents of heavy metals were high. The contents of heavy metals were lower in the near river zone than outside the levees of Yellow River. And the heavy metal contents in the middle and lower section were higher than those outside the levees of Yellow River, while the lower section (northwest) showed a tendency of pollution enrichment. (4) In the view of the average individual potential ecological risk index of heavy metals (E(r)i), the potential ecological risk of Hg reached intense levels, and the potential ecological risk of Pb's contribution to the integrated risk was 50.5%, which was the heavy metal with highest ecological risks. Cd and Pb had a moderate ecological risk, while As and Cr had minor ecological risk. Ecological hazards of heavy metals ranked in the ascending order of Hg > Pb > As > Cd > Cr. (5) The ecological hazard of the heavy metals was ranked in the order Hg > Cd > As > Pb > Cr. Based on the potential ecological risk level corresponding to the RI values, it was shown that there was moderate potential ecological risks of heavy metals in the Yellow River beach region in Kaifeng.

Correlates of current and heavy smoking among U.S. soldiers returning from combat.

PubMed

Lopez, Alexa A; Toblin, Robin L; Riviere, Lyndon A; Lee, James D; Adler, Amy B

2018-06-01

Smoking rates are higher in U.S. soldiers than civilians, with combat-experienced soldiers particularly at risk for heavy smoking (≥20 cigarettes/day). While heavy smoking is correlated with mental health symptoms in civilian samples, the extent to which these symptoms, background variables, and unit climate (self-reported assessments of cohesion, organizational support, and leadership) are linked to smoking in at-risk soldiers remains unclear. The present study examines a range of correlates of smoking-related behavior. Cross-sectional, anonymous surveys were collected from 3,380 soldiers following a deployment in 2008-2009. Measures included demographics, combat exposures, unit climate (e.g., unit cohesion, perceived organizational support, leadership), short sleep duration, and behavioral health variables (e.g., posttraumatic stress disorder, depression, anxiety, alcohol misuse, aggression, adverse childhood experiences [ACEs]). Logistic regression modeled the effects of these variables on two outcome variables: daily smoking and heavy smoking. In the current sample, nearly half (47%) of soldiers reported smoking daily, with 35% of all smokers reporting heavy smoking (17% of the entire sample). Daily smoking was associated with demographic (age, gender, education, rank), behavioral health (ACE, alcohol misuse, sleep duration, aggression), and unit characteristics (unit cohesion); only increased combat exposures and aggression were specifically associated with heavy smoking. Interventions focused on the postdeployment period could incorporate messages about alternatives to smoking as a coping strategy while unit interventions or individual counseling addressing aggression could also address smoking as a negative coping strategy. (PsycINFO Database Record (c) 2018 APA, all rights reserved).

Evaluation of heavy vehicles on capacity analysis for roundabout design : USDOT Region V Regional University Transportation Center final report : technical summary.

DOT National Transportation Integrated Search

2016-12-15

Heavy vehicles have a much larger effect on the flow of a roundabout than a passenger car, and therefore they must be accounted for in the design (Transportation Research Board). Very few studies have looked at the effect of heavy vehicles on the flo...

Causal inference between bioavailability of heavy metals and environmental factors in a large-scale region.

PubMed

Liu, Yuqiong; Du, Qingyun; Wang, Qi; Yu, Huanyun; Liu, Jianfeng; Tian, Yu; Chang, Chunying; Lei, Jing

2017-07-01

The causation between bioavailability of heavy metals and environmental factors are generally obtained from field experiments at local scales at present, and lack sufficient evidence from large scales. However, inferring causation between bioavailability of heavy metals and environmental factors across large-scale regions is challenging. Because the conventional correlation-based approaches used for causation assessments across large-scale regions, at the expense of actual causation, can result in spurious insights. In this study, a general approach framework, Intervention calculus when the directed acyclic graph (DAG) is absent (IDA) combined with the backdoor criterion (BC), was introduced to identify causation between the bioavailability of heavy metals and the potential environmental factors across large-scale regions. We take the Pearl River Delta (PRD) in China as a case study. The causal structures and effects were identified based on the concentrations of heavy metals (Zn, As, Cu, Hg, Pb, Cr, Ni and Cd) in soil (0-20 cm depth) and vegetable (lettuce) and 40 environmental factors (soil properties, extractable heavy metals and weathering indices) in 94 samples across the PRD. Results show that the bioavailability of heavy metals (Cd, Zn, Cr, Ni and As) was causally influenced by soil properties and soil weathering factors, whereas no causal factor impacted the bioavailability of Cu, Hg and Pb. No latent factor was found between the bioavailability of heavy metals and environmental factors. The causation between the bioavailability of heavy metals and environmental factors at field experiments is consistent with that on a large scale. The IDA combined with the BC provides a powerful tool to identify causation between the bioavailability of heavy metals and environmental factors across large-scale regions. Causal inference in a large system with the dynamic changes has great implications for system-based risk management. Copyright © 2017 Elsevier Ltd. All rights reserved.

[Evaluation on environmental quality of heavy metals in soils and vegetables based on geostatistics and GIS].

PubMed

Xie, Zheng-miao; Li, Jing; Wang, Bi-ling; Chen, Jian-jun

2006-10-01

Contents of heavy metals (Pb, Zn, Cd, Cu) in soils and vegetables from Dongguan town in Shangyu city, China were studied using geostatistical analysis and GIS technique to evaluate environmental quality. Based on the evaluation criteria, the distribution of the spatial variability of heavy metals in soil-vegetable system was mapped and analyzed. The results showed that the distribution of soil heavy metals in a large number of soil samples in Dongguan town was asymmetric. The contents of Zn and Cu were lower than those of Cd and Pb. The concentrations distribution of Pb, Zn, Cd and Cu in soils and vegetables were different in spatial variability. There was a close relationship between total and available contents of heavy metals in soil. The contents of Pb and Cd in green vegetables were higher than those of Zn and Cu and exceeded the national sanitation standards for vegetables.

The structural analysis of shark IgNAR antibodies reveals evolutionary principles of immunoglobulins.

PubMed

Feige, Matthias J; Gräwert, Melissa A; Marcinowski, Moritz; Hennig, Janosch; Behnke, Julia; Ausländer, David; Herold, Eva M; Peschek, Jirka; Castro, Caitlin D; Flajnik, Martin; Hendershot, Linda M; Sattler, Michael; Groll, Michael; Buchner, Johannes

2014-06-03

Sharks and other cartilaginous fish are the phylogenetically oldest living organisms that rely on antibodies as part of their adaptive immune system. They produce the immunoglobulin new antigen receptor (IgNAR), a homodimeric heavy chain-only antibody, as a major part of their humoral adaptive immune response. Here, we report the atomic resolution structure of the IgNAR constant domains and a structural model of this heavy chain-only antibody. We find that despite low sequence conservation, the basic Ig fold of modern antibodies is already present in the evolutionary ancient shark IgNAR domains, highlighting key structural determinants of the ubiquitous Ig fold. In contrast, structural differences between human and shark antibody domains explain the high stability of several IgNAR domains and allowed us to engineer human antibodies for increased stability and secretion efficiency. We identified two constant domains, C1 and C3, that act as dimerization modules within IgNAR. Together with the individual domain structures and small-angle X-ray scattering, this allowed us to develop a structural model of the complete IgNAR molecule. Its constant region exhibits an elongated shape with flexibility and a characteristic kink in the middle. Despite the lack of a canonical hinge region, the variable domains are spaced appropriately wide for binding to multiple antigens. Thus, the shark IgNAR domains already display the well-known Ig fold, but apart from that, this heavy chain-only antibody employs unique ways for dimerization and positioning of functional modules.

Brain Response to Working Memory Over Three Years of Adolescence: Influence of Initiating Heavy Drinking

PubMed Central

Squeglia, Lindsay M.; Pulido, Carmen; Wetherill, Reagan R.; Jacobus, Joanna; Brown, Gregory G.; Tapert, Susan F.

2012-01-01

Objective: Many adolescents engage in heavy alcohol use. The aim of this study was to disentangle whether brain abnormalities seen in adolescent heavy drinkers are a consequence of heavy drinking, a preexisting risk factor for initiation of alcohol use, or both. Method: Study 1 used cross-sectional functional magnetic resonance imaging (fMRI) visual working-memory (VWM) data from 15- to 19-year-olds (20 heavy drinkers, 20 controls) to identify brain regions affected by heavy adolescent alcohol use. Study 2 used longitudinal fMRI VWM data from 12- to 16-year-olds imaged before the onset of drinking and imaged again on the same scanner approximately 3 years later. Those who had transitioned into heavy drinking (n = 20) were matched to continuous nondrinkers (n = 20) on baseline alcohol risk and developmental factors (N = 40; 80 scans). Results: Study 1 found that heavy drinkers exhibited more frontal and parietal but less occipital activation than controls, defining the regions of interest for Study 2. In Study 2, adolescents who later transitioned into heavy drinking showed less fMRI response contrast at baseline than continuous nondrinkers, which increased after the onset of heavy drinking, in frontal (1,431 μL, p = .003; η2 = .19) and parietal (810 μL, p = .005; η2 = .23) regions, as in Study 1. Lower baseline activation in the frontal and parietal regions predicted subsequent substance use, more so than commonly observed predictors of youth drinking (p < .05). Conclusions: Adolescents who initiated heavy drinking showed different brain activation before the onset of drinking, then less efficient information processing after high-dose alcohol use started. This suggests neural response patterns that could be risk factors for future substance use and also supports prior neuropsychological reports indicating that initiating heavy episodic drinking in adolescence may be followed by subtle alterations in brain functioning. PMID:22846239

Mice with megabase humanization of their immunoglobulin genes generate antibodies as efficiently as normal mice.

PubMed

Murphy, Andrew J; Macdonald, Lynn E; Stevens, Sean; Karow, Margaret; Dore, Anthony T; Pobursky, Kevin; Huang, Tammy T; Poueymirou, William T; Esau, Lakeisha; Meola, Melissa; Mikulka, Warren; Krueger, Pamela; Fairhurst, Jeanette; Valenzuela, David M; Papadopoulos, Nicholas; Yancopoulos, George D

2014-04-08

Mice genetically engineered to be humanized for their Ig genes allow for human antibody responses within a mouse background (HumAb mice), providing a valuable platform for the generation of fully human therapeutic antibodies. Unfortunately, existing HumAb mice do not have fully functional immune systems, perhaps because of the manner in which their genetic humanization was carried out. Heretofore, HumAb mice have been generated by disrupting the endogenous mouse Ig genes and simultaneously introducing human Ig transgenes at a different and random location; KO-plus-transgenic humanization. As we describe in the companion paper, we attempted to make mice that more efficiently use human variable region segments in their humoral responses by precisely replacing 6 Mb of mouse Ig heavy and kappa light variable region germ-line gene segments with their human counterparts while leaving the mouse constant regions intact, using a unique in situ humanization approach. We reasoned the introduced human variable region gene segments would function indistinguishably in their new genetic location, whereas the retained mouse constant regions would allow for optimal interactions and selection of the resulting antibodies within the mouse environment. We show that these mice, termed VelocImmune mice because they were generated using VelociGene technology, efficiently produce human:mouse hybrid antibodies (that are rapidly convertible to fully human antibodies) and have fully functional humoral immune systems indistinguishable from those of WT mice. The efficiency of the VelocImmune approach is confirmed by the rapid progression of 10 different fully human antibodies into human clinical trials.

Heavy Metal Music and Reckless Behavior among Adolescents.

ERIC Educational Resources Information Center

Arnett, Jeffrey

1991-01-01

Fifty-four male and 30 female adolescents who like heavy metal music were compared on various outcome variables to 56 male and 105 female peers who do not like it. Those who like heavy metal report a wider range of reckless behavior than those who do not like it. (SLD)

Uterine Polyps

MedlinePlus

... Signs and symptoms of uterine polyps include: Irregular menstrual bleeding — for example, having frequent, unpredictable periods of variable length and heaviness Bleeding between menstrual periods Excessively heavy menstrual periods Vaginal bleeding after ...

Spatial-temporal Variations and Source Apportionment of typical Heavy Metals in Beijing-Tianjin-Hebei (BTH) region of China Based on Localized Air Pollutants Emission Inventory and WRF-CMAQ modelling

NASA Astrophysics Data System (ADS)

Tian, H.; Liu, S.; Zhu, C.; Liu, H.; Wu, B.

2017-12-01

Abstract: Anthropogenic atmospheric emissions of air pollutants have caused worldwide concerns due to their adverse effects on human health and the ecosystem. By determining the best available emission factors for varied source categories, we established the comprehensive atmospheric emission inventories of hazardous air pollutants including 12 typical toxic heavy metals (Hg, As, Se, Pb, Cd, Cr, Ni, Sb, Mn, Co, Cu, and Zn) from primary anthropogenic activities in Beijing-Tianjin-Hebei (BTH) region of China for the period of 2012 for the first time. The annual emissions of these pollutants were allocated at a high spatial resolution of 9km × 9km grid with ArcGIS methodology and surrogate indexes, such as regional population and gross domestic product (GDP). Notably, the total heavy metal emissions from this region represented about 10.9% of the Chinese national total emissions. The areas with high emissions of heavy metals were mainly concentrated in Tangshan, Shijiazhuang, Handan and Tianjin. Further, WRF-CMAQ modeling system were applied to simulate the regional concentration of heavy metals to explore their spatial-temporal variations, and the source apportionment of these heavy metals in BTH region was performed using the Brute-Force method. Finally, integrated countermeasures were proposed to minimize the final air pollutants discharge on account of the current and future demand of energy-saving and pollution reduction in China. Keywords: heavy metals; particulate matter; emission inventory; CMAQ model; source apportionment Acknowledgment. This work was funded by the National Natural Science Foundation of China (21377012 and 21177012) and the Trail Special Program of Research on the Cause and Control Technology of Air Pollution under the National Key Research and Development Plan of China (2016YFC0201501).

Sequence intrinsic somatic mutation mechanisms contribute to affinity maturation of VRC01-class HIV-1 broadly neutralizing antibodies

PubMed Central

Hwang, Joyce K.; Wang, Chong; Du, Zhou; Meyers, Robin M.; Kepler, Thomas B.; Neuberg, Donna; Kwong, Peter D.; Mascola, John R.; Joyce, M. Gordon; Bonsignori, Mattia; Haynes, Barton F.; Yeap, Leng-Siew; Alt, Frederick W.

2017-01-01

Variable regions of Ig chains provide the antigen recognition portion of B-cell receptors and derivative antibodies. Ig heavy-chain variable region exons are assembled developmentally from V, D, J gene segments. Each variable region contains three antigen-contacting complementarity-determining regions (CDRs), with CDR1 and CDR2 encoded by the V segment and CDR3 encoded by the V(D)J junction region. Antigen-stimulated germinal center (GC) B cells undergo somatic hypermutation (SHM) of V(D)J exons followed by selection for SHMs that increase antigen-binding affinity. Some HIV-1–infected human subjects develop broadly neutralizing antibodies (bnAbs), such as the potent VRC01-class bnAbs, that neutralize diverse HIV-1 strains. Mature VRC01-class bnAbs, including VRC-PG04, accumulate very high SHM levels, a property that hinders development of vaccine strategies to elicit them. Because many VRC01-class bnAb SHMs are not required for broad neutralization, high overall SHM may be required to achieve certain functional SHMs. To elucidate such requirements, we used a V(D)J passenger allele system to assay, in mouse GC B cells, sequence-intrinsic SHM-targeting rates of nucleotides across substrates representing maturation stages of human VRC-PG04. We identify rate-limiting SHM positions for VRC-PG04 maturation, as well as SHM hotspots and intrinsically frequent deletions associated with SHM. We find that mature VRC-PG04 has low SHM capability due to hotspot saturation but also demonstrate that generation of new SHM hotspots and saturation of existing hotspot regions (e.g., CDR3) does not majorly influence intrinsic SHM in unmutated portions of VRC-PG04 progenitor sequences. We discuss implications of our findings for bnAb affinity maturation mechanisms. PMID:28747530

Related Mechanisms of Antibody Somatic Hypermutation and Class Switch Recombination

PubMed Central

HWANG, JOYCE K.; ALT, FREDERICK W.; YEAP, LENG-SIEW

2015-01-01

The primary antibody repertoire is generated by mechanisms involving the assembly of the exons that encode the antigen-binding variable regions of immunoglobulin heavy (IgH) and light (IgL) chains during the early development of B lymphocytes. After antigen-dependent activation, mature B lymphocytes can further alter their IgH and IgL variable region exons by the process of somatic hypermutation (SHM), which allows the selection of B cells in which SHMs resulted in the production of antibodies with increased antigen affinity. In addition, during antigen-dependent activation, B cells can also change the constant region of their IgH chain through a DNA double-strand-break (DSB) dependent process referred to as IgH class switch recombination (CSR), which generates B cell progeny that produce antibodies with different IgH constant region effector functions that are best suited for a elimination of a particular pathogen or in a particular setting. Both the mutations that underlie SHM and the DSBs that underlie CSR are initiated in target genes by activation-induced cytidine deaminase (AID). This review describes in depth the processes of SHM and CSR with a focus on mechanisms that direct AID cytidine deamination in activated B cells and mechanisms that promote the differential outcomes of such cytidine deamination. PMID:26104555

Cloning and molecular characterization of the cDNAs encoding the variable regions of an anti-CD20 monoclonal antibody.

PubMed

Shanehbandi, Dariush; Majidi, Jafar; Kazemi, Tohid; Baradaran, Behzad; Aghebati-Maleki, Leili

2017-01-01

CD20-based targeting of B-cells in hematologic malignancies and autoimmune disorders is associated with outstanding clinical outcomes. Isolation and characterization of VH and VL cDNAs encoding the variable regions of the heavy and light chains of monoclonal antibodies (MAb) is necessary to produce next generation MAbs and their derivatives such as bispecific antibodies (bsAb) and single-chain variable fragments (scFv). This study was aimed at cloning and characterization of the VH and VL cDNAs from a hybridoma cell line producing an anti-CD20 MAb. VH and VL fragments were amplified, cloned and characterized. Furthermore, amino acid sequences of VH, VL and corresponding complementarity-determining regions (CDR) were determined and compared with those of four approved MAbs including Rituximab (RTX), Ibritumomab tiuxetan, Ofatumumab and GA101. The cloned VH and VL cDNAs were found to be functional and follow a consensus pattern. Amino acid sequences corresponding to the VH and VL fragments also indicated noticeable homologies to those of RTX and Ibritumomab. Furthermore, amino acid sequences of the relating CDRs had remarkable similarities to their counterparts in RTX and Ibritumomab. Successful recovery of VH and VL fragments encourages the development of novel CD20 targeting bsAbs, scFvs, antibody conjugates and T-cells armed with chimeric antigen receptors.

[Distribution of soil heavy metal and pollution evaluation on the different sampling scales in farmland on Yellow River irrigation area of Ningxia: a case study in Xingqing County of Yinchuan City].

PubMed

Wang, You-Qi; Bai, Yi-Ru; Wang, Jian-Yu

2014-07-01

Determining spatial distributions and analyses contamination condition of soil heavy metals play an important role in evaluation of the quality of agricultural ecological environment and the protection of food safety and human health. Topsoil samples (0-20 cm) from 223 sites in farmland were collected at two scales of sampling grid (1 m x 1 m, 10 m x 10 m) in the Yellow River irrigation area of Ningxia. The objectives of this study were to investigate the spatial variability of total copper (Cu), total zinc (Zn), total chrome (Cr), total cadmium (Cd) and total lead (Pb) on the two sampling scales by the classical and geostatistical analyses. The single pollution index (P(i)) and the Nemerow pollution index (P) were used to evaluate the soil heavy metal pollution. The classical statistical analyses showed that all soil heavy metals demonstrated moderate variability, the coefficient of variation (CV) changed in the following sequence: Cd > Pb > Cr > Zn > Cu. Geostatistical analyses showed that the nugget coefficient of Cd on the 10 m x 10 m scale and Pb on the 1 m x 1 m scale were 100% with pure nugget variograms, which showed weak variability affected by random factors. The nugget coefficient of the other indexes was less than 25%, which showed a strong variability affected by structural factors. The results combined with P(i) and P indicated that most soil heavy metals have slight pollution except total copper, and in general there were the trend of heavy metal accumulation in the study area.

Spatial assessment and source identification of heavy metals pollution in surface water using several chemometric techniques.

PubMed

Ismail, Azimah; Toriman, Mohd Ekhwan; Juahir, Hafizan; Zain, Sharifuddin Md; Habir, Nur Liyana Abdul; Retnam, Ananthy; Kamaruddin, Mohd Khairul Amri; Umar, Roslan; Azid, Azman

2016-05-15

This study presents the determination of the spatial variation and source identification of heavy metal pollution in surface water along the Straits of Malacca using several chemometric techniques. Clustering and discrimination of heavy metal compounds in surface water into two groups (northern and southern regions) are observed according to level of concentrations via the application of chemometric techniques. Principal component analysis (PCA) demonstrates that Cu and Cr dominate the source apportionment in northern region with a total variance of 57.62% and is identified with mining and shipping activities. These are the major contamination contributors in the Straits. Land-based pollution originating from vehicular emission with a total variance of 59.43% is attributed to the high level of Pb concentration in the southern region. The results revealed that one state representing each cluster (northern and southern regions) is significant as the main location for investigating heavy metal concentration in the Straits of Malacca which would save monitoring cost and time. The monitoring of spatial variation and source of heavy metals pollution at the northern and southern regions of the Straits of Malacca, Malaysia, using chemometric analysis. Copyright © 2015 Elsevier Ltd. All rights reserved.

Genetic polymorphisms in the amino acid transporters LAT1 and LAT2 in relation to the pharmacokinetics and side effects of melphalan.

PubMed

Kühne, Annett; Kaiser, Rolf; Schirmer, Markus; Heider, Ulrike; Muhlke, Sabine; Niere, Wiebke; Overbeck, Tobias; Hohloch, Karin; Trümper, Lorenz; Sezer, Orhan; Brockmöller, Jürgen

2007-07-01

Melphalan is widely used in the treatment of multiple myeloma. Pharmacokinetics of this alkylating drug shows high inter-individual variability. As melphalan is a phenylalanine derivative, the pharmacokinetic variability may be determined by genetic polymorphisms in the L-type amino acid transporters LAT1 (SLC7A5) and LAT2 (SLC7A8). Pharmacokinetics were analysed in 64 patients after first administration of intravenous melphalan. Severity of side effects was documented according to WHO criteria. Genomic DNA was analysed for polymorphisms in LAT1 and LAT2 by sequencing of the entire coding region, intron-exon boundaries and 2 kb upstream promoter region. Selected polymorphisms in the common heavy chain of both transporters, the protein 4F2hc (SLC3A2), were analysed by single nucleotide primer extension. Melphalan pharmacokinetics was highly variable with up to 6.2-fold differences in total clearance. A total of 44 polymorphisms were identified in LAT1 and 21 polymorphisms in LAT2. From all variants, only five were in the coding region and only one heterozygous non-synonymous polymorphism (Ala94Thr) was found in LAT2. Numerous polymorphisms were found in the LAT1 and LAT2 5'-flanking regions but did not correlate with expression of the respective genes. No significant correlations could be observed between the polymorphisms in 4F2hc, LAT1, and LAT2 with melphalan pharmacokinetics or with melphalan side effects. The study confirmed that these transporter genes are highly conserved, particularly in the coding sequences. Genetic variation in 4F2hc, LAT1, and LAT2 does not appear to be a major cause of inter-individual variability in pharmacokinetics and of adverse reactions to melphalan.

Combine the soil water assessment tool (SWAT) with sediment geochemistry to evaluate diffuse heavy metal loadings at watershed scale.

PubMed

Jiao, Wei; Ouyang, Wei; Hao, Fanghua; Huang, Haobo; Shan, Yushu; Geng, Xiaojun

2014-09-15

Assessing the diffuse pollutant loadings at watershed scale has become increasingly important when formulating effective watershed water management strategies, but the process was seldom achieved for heavy metals. In this study, the overall temporal-spatial variability of particulate Pb, Cu, Cr and Ni losses within an agricultural watershed was quantitatively evaluated by combining SWAT with sediment geochemistry. Results showed that the watershed particulate heavy metal loadings displayed strong variability in the simulation period 1981-2010, with an obvious increasing trend in recent years. The simulated annual average loadings were 20.21 g/ha, 21.75 g/ha, 47.35 g/ha and 21.27 g/ha for Pb, Cu, Cr and Ni, respectively. By comparison, these annual average values generally matched the estimated particulate heavy metal loadings at field scale. With spatial interpolation of field loadings, it was found that the diffuse heavy metal pollution mainly came from the sub-basins dominated with cultivated lands, accounting for over 70% of total watershed loadings. The watershed distribution of particulate heavy metal losses was very similar to that of soil loss but contrary to that of heavy metal concentrations in soil, highlighting the important role of sediment yield in controlling the diffuse heavy metal loadings. Copyright © 2014 Elsevier B.V. All rights reserved.

National pattern for heavy metal contamination of topsoil in remote farmland impacted by haze pollution in China

NASA Astrophysics Data System (ADS)

Luo, Zhuanxi; Gao, Meirong; Luo, Xiaosan; Yan, Changzhou

2016-03-01

The influence of haze pollution on heavy metal transport into farmland topsoil has received little attention. This study reports on heavy metal concentrations in topsoil from remote farmland in China as well as the spatial similarity and correlation to such heavy metals in atmospheric particulate matter (APM). Heavy metal concentrations in topsoil from remote farmland significantly increased over time. Moreover, stations in the mid-eastern region of China accounted for greater than 55% of total stations that exhibited higher concentrations in 2010 than 2005. This spatial trend was consistent with changes observed in APM where mass concentrations of heavy metals were also found to be higher in the mid-eastern region of China. Heavy metals in APM have already likely caused contamination in remote farmland topsoil, particularly in the mid-eastern region of China. This is primarily due to long-range transport and deposition of APM owing that no pesticides or fertilizers have been used in the remote farmland stations selected and no industries were situated nearby. Regarding the large-scale, severe haze pollution occurring in China today, it is urgent to ascertain the accumulation of heavy metals in farmland topsoil resulting from APM as well as its subsequent potential mechanisms and ecological risks.

Assessment and management of heavy metal pollution in the marine environment of the Arabian Gulf: a review.

PubMed

Naser, Humood A

2013-07-15

The Arabian Gulf is considered among the highest anthropogenically impacted regions in the world. Heavy metals contamination in coastal and marine environments is becoming an increasingly serious threat to both the naturally stressed marine ecosystems and humans that rely on marine resources for food, industry and recreation. Heavy metals are introduced to coastal and marine environments through a variety of sources and activities including sewage and industrial effluents, brine discharges, coastal modifications and oil pollution. The present paper reviews heavy metal contamination in a variety of marine organisms, and sediments, and suggests measures for environmental management of heavy metal pollution in the Arabian Gulf. Most of the reviewed literature confirmed that heavy metal concentrations in marine organisms were generally within allowable concentrations and pose no threat to public health. Likewise, studies suggested that levels of heavy metals in marine sediments are similar or lower compared to other regions. However, localized hotspots of chronic metal pollution in areas influenced by industrial facilities, desalination plants, and oil refineries have been reported. Holistic spatial and temporal monitoring and comprehensive national and regional strategies are critical to combat and manage heavy metal pollution in the Arabian Gulf. Copyright © 2013 Elsevier Ltd. All rights reserved.

Water Quality Characteristics of Sembrong Dam Reservoir, Johor, Malaysia

NASA Astrophysics Data System (ADS)

Mohd-Asharuddin, S.; Zayadi, N.; Rasit, W.; Othman, N.

2016-07-01

A study of water quality and heavy metal content in Sembrong Dam water was conducted from April - August 2015. A total of 12 water quality parameters and 6 heavy metals were measured and classified based on the Interim National Water Quality Standard of Malaysia (INWQS). The measured and analyzed parameter variables were divided into three main categories which include physical, chemical and heavy metal contents. Physical and chemical parameter variables were temperature, dissolved oxygen (DO), biochemical oxygen demand (BOD), chemical oxygen demand (COD), total suspended solid (TSS), turbidity, pH, nitrate, phosphate, ammonium, conductivity and salinity. The heavy metals measured were copper (Cu), lead (Pb), aluminium (Al), chromium (Cr), ferum (Fe) and zinc (Zn). According to INWQS, the water salinity, conductivity, BOD, TSS and nitrate level fall under Class I, while the Ph, DO and turbidity lie under Class IIA. Furthermore, values of COD and ammonium were classified under Class III. The result also indicates that the Sembrong Dam water are not polluted with heavy metals since all heavy metal readings recorded were falls far below Class I.

Comparative Chromosome Map and Heterochromatin Features of the Gray Whale Karyotype (Cetacea).

PubMed

Kulemzina, Anastasia I; Proskuryakova, Anastasia A; Beklemisheva, Violetta R; Lemskaya, Natalia A; Perelman, Polina L; Graphodatsky, Alexander S

2016-01-01

Cetacean karyotypes possess exceptionally stable diploid numbers and highly conserved chromosomes. To date, only toothed whales (Odontoceti) have been analyzed by comparative chromosome painting. Here, we studied the karyotype of a representative of baleen whales, the gray whale (Eschrichtius robustus, Mysticeti), by Zoo-FISH with dromedary camel and human chromosome-specific probes. We confirmed a high degree of karyotype conservation and found an identical order of syntenic segments in both branches of cetaceans. Yet, whale chromosomes harbor variable heterochromatic regions constituting up to a third of the genome due to the presence of several types of repeats. To investigate the cause of this variability, several classes of repeated DNA sequences were mapped onto chromosomes of whale species from both Mysticeti and Odontoceti. We uncovered extensive intrapopulation variability in the size of heterochromatic blocks present in homologous chromosomes among 3 individuals of the gray whale by 2-step differential chromosome staining. We show that some of the heteromorphisms observed in the gray whale karyotype are due to distinct amplification of a complex of common cetacean repeat and heavy satellite repeat on homologous autosomes. Furthermore, we demonstrate localization of the telomeric repeat in the heterochromatin of both gray and pilot whale (Globicephala melas, Odontoceti). Heterochromatic blocks in the pilot whale represent a composite of telomeric and common repeats, while heavy satellite repeat is lacking in the toothed whale consistent with previous studies. © 2016 S. Karger AG, Basel.

Identifying the interferences of irrigation on evapotranspiration variability over the Northern High Plains

NASA Astrophysics Data System (ADS)

Zeng, R.; Cai, X.

2016-12-01

Irrigation has considerably interfered with hydrological processes in arid and semi-arid areas with heavy irrigated agriculture. With the increasing demand for food production and evaporative demand due to climate change, irrigation water consumption is expected to increase, which would aggravate the interferences to hydrologic processes. Current studies focus on the impact of irrigation on the mean value of evapotranspiration (ET) at either local or regional scale, however, how irrigation changes the variability of ET has not been well understood. This study analyzes the impact of extensive irrigation on ET variability in the Northern High Plains. We apply an ET variance decomposition framework developed from our previous work to quantify the effects of both climate and irrigation on ET variance in the Northern High Plains watersheds. Based on climate and water table observations, we assess the monthly ET variance and its components for two periods: 1930s-1960s with less irrigation development 970s-2010s with more development. It is found that irrigation not only caused the well-recognized groundwater drawdown and stream depletion problems in the region, but also buffered ET variance from climatic fluctuations. In addition to increasing food productivity, irrigation also stabilizes crop yield by mitigating the impact of hydroclimatic variability. With complementary water supply from irrigation, ET often approaches to the potential ET, and thus the observed ET variance is more attributed to climatic variables especially temperature; meanwhile irrigation causes significant seasonal fluctuations to groundwater storage. For sustainable water resources management in the Northern High Plains, we argue that both the mean value and the variance of ET should be considered together for the regulation of irrigation in this region.

The formation of ultra compact dwarf galaxies and massive globular clusters. Quasar-like objects to test for a variable stellar initial mass function

NASA Astrophysics Data System (ADS)

Jeřábková, T.; Kroupa, P.; Dabringhausen, J.; Hilker, M.; Bekki, K.

2017-12-01

The stellar initial mass function (IMF) has been described as being invariant, bottom-heavy, or top-heavy in extremely dense star-burst conditions. To provide usable observable diagnostics, we calculate redshift dependent spectral energy distributions of stellar populations in extreme star-burst clusters, which are likely to have been the precursors of present day massive globular clusters (GCs) and of ultra compact dwarf galaxies (UCDs). The retention fraction of stellar remnants is taken into account to assess the mass to light ratios of the ageing star-burst. Their redshift dependent photometric properties are calculated as predictions for James Webb Space Telescope (JWST) observations. While the present day GCs and UCDs are largely degenerate concerning bottom-heavy or top-heavy IMFs, a metallicity- and density-dependent top-heavy IMF implies the most massive UCDs, at ages < 100 Myr, to appear as objects with quasar-like luminosities with a 0.1-10% variability on a monthly timescale due to core collapse supernovae.

Brain volume reductions in adolescent heavy drinkers.

PubMed

Squeglia, Lindsay M; Rinker, Daniel A; Bartsch, Hauke; Castro, Norma; Chung, Yoonho; Dale, Anders M; Jernigan, Terry L; Tapert, Susan F

2014-07-01

Brain abnormalities in adolescent heavy drinkers may result from alcohol exposure, or stem from pre-existing neural features. This longitudinal morphometric study investigated 40 healthy adolescents, ages 12-17 at study entry, half of whom (n=20) initiated heavy drinking over the 3-year follow-up. Both assessments included high-resolution magnetic resonance imaging. FreeSurfer was used to segment brain volumes, which were measured longitudinally using the newly developed quantitative anatomic regional change analysis (QUARC) tool. At baseline, participants who later transitioned into heavy drinking showed smaller left cingulate, pars triangularis, and rostral anterior cingulate volume, and less right cerebellar white matter volumes (p<.05), compared to continuous non-using teens. Over time, participants who initiated heavy drinking showed significantly greater volume reduction in the left ventral diencephalon, left inferior and middle temporal gyrus, and left caudate and brain stem, compared to substance-naïve youth (p<.05). Findings suggest pre-existing volume differences in frontal brain regions in future drinkers and greater brain volume reduction in subcortical and temporal regions after alcohol use was initiated. This is consistent with literature showing pre-existing cognitive deficits on tasks recruited by frontal regions, as well as post-drinking consequences on brain regions involved in language and spatial tasks. Published by Elsevier Ltd.

Comparative evaluation of short-term leach tests for heavy metal release from mineral processing waste

USGS Publications Warehouse

Al-Abed, S. R.; Hageman, P.L.; Jegadeesan, G.; Madhavan, N.; Allen, D.

2006-01-01

Evaluation of metal leaching using a single leach test such as the Toxicity Characteristic Leaching Procedure (TCLP) is often questionable. The pH, redox potential (Eh), particle size and contact time are critical variables in controlling metal stability, not accounted for in the TCLP. This paper compares the leaching behavior of metals in mineral processing waste via short-term extraction tests such as TCLP, Field Leach Test (FLT) used by USGS and deionized water extraction tests. Variation in the extracted amounts was attributed to the use of different particle sizes, extraction fluid and contact time. In the controlled pH experiments, maximum metal extraction was obtained at acidic pH for cationic heavy metals such as Cu, Pb and Zn, while desorption of Se from the waste resulted in high extract concentrations in the alkaline region. Precipitation of iron, caused by a pH increase, probably resulted in co-precipitation and immobilization of Cu, Pb and Zn in the alkaline pH region. A sequential extraction procedure was performed on the original waste and the solid residue from the Eh-pH experiments to determine the chemical speciation and distribution of the heavy metals. In the as-received waste, Cu existed predominantly in water soluble or sulfidic phases, with no binding to carbonates or iron oxides. Similar characteristics were observed for Pb and Zn, while Se existed mostly associated with iron oxides or sulfides. Adsorption/co-precipitation of Cu, Se and Pb on precipitated iron hydroxides was observed in the experimental solid residues, resulting in metal immobilization above pH 7.

[Construction of the lentiviral expression vector for anti-p185(erbB2) mouse/human chimeric antibody].

PubMed

Liu, Fang; Li, Li; Zhang, Wei; Wang, Qi

2013-04-01

This research was to construct the lentiviral expression vector for anti- p185(erbB2) mouse/human chimeric antibody and to determine the expression of the chimeric antibody gene in 293T cells transfected with this vector. The genes (vL and vH) coding light and heavy chain of variable regions of anti-p185(erbB2) mAb and the constant regions of human IgG1 (kappa and gamma1) were cloned with PCR method. The target genes were assembled by three-primers PCR method to obtain the chimeric light chain (L) and the chimeric heavy chain (H). Both chains inserted into the down stream and upper stream of IRES gene of the plasmid pVAX1/IRES respectively. We digested the plasmid pVAX1/ H-IRES-L with endoenzyme and subcloned H-IRES-L into the lentiviral vector pWPI. The enzyme digestion and sequence analysis showed that the lentiviral expression vector pWPI/H-IRES-L was constructed correctly. Then, it was transfected into 293T cells and after 48h, GFP protein expression in 293T cells were detected by fluorescent microscope and the chimeric antibody expression was detected by RT-PCR and direct ELISA. The results showed that after 293T cells were transfected with recombination plasmid, both light and heavy chains of the chimeric antibody genes could express together. The chimeric antibody expressed could bind to p185(erbB2) specifically. This research may lay a sound foundation for further study of anti-p185(erbB2) engineered antibody.

Synoptic Conditions and Moisture Sources Actuating Extreme Precipitation in Nepal

NASA Astrophysics Data System (ADS)

Bohlinger, Patrik; Sorteberg, Asgeir; Sodemann, Harald

2017-12-01

Despite the vast literature on heavy-precipitation events in South Asia, synoptic conditions and moisture sources related to extreme precipitation in Nepal have not been addressed systematically. We investigate two types of synoptic conditions—low-pressure systems and midlevel troughs—and moisture sources related to extreme precipitation events. To account for the high spatial variability in rainfall, we cluster station-based daily precipitation measurements resulting in three well-separated geographic regions: west, central, and east Nepal. For each region, composite analysis of extreme events shows that atmospheric circulation is directed against the Himalayas during an extreme event. The direction of the flow is regulated by midtropospheric troughs and low-pressure systems traveling toward the respective region. Extreme precipitation events feature anomalous high abundance of total column moisture. Quantitative Lagrangian moisture source diagnostic reveals that the largest direct contribution stems from land (approximately 75%), where, in particular, over the Indo-Gangetic Plain moisture uptake was increased. Precipitation events occurring in this region before the extreme event likely provided additional moisture.

Reactibodies generated by kinetic selection couple chemical reactivity with favorable protein dynamics

PubMed Central

Smirnov, Ivan; Carletti, Eugénie; Kurkova, Inna; Nachon, Florian; Nicolet, Yvain; Mitkevich, Vladimir A.; Débat, Hélène; Avalle, Bérangère; Belogurov, Alexey A.; Kuznetsov, Nikita; Reshetnyak, Andrey; Masson, Patrick; Tonevitsky, Alexander G.; Ponomarenko, Natalia; Makarov, Alexander A.; Friboulet, Alain; Tramontano, Alfonso; Gabibov, Alexander

2011-01-01

Igs offer a versatile template for combinatorial and rational design approaches to the de novo creation of catalytically active proteins. We have used a covalent capture selection strategy to identify biocatalysts from within a human semisynthetic antibody variable fragment library that uses a nucleophilic mechanism. Specific phosphonylation at a single tyrosine within the variable light-chain framework was confirmed in a recombinant IgG construct. High-resolution crystallographic structures of unmodified and phosphonylated Fabs display a 15-Å-deep two-chamber cavity at the interface of variable light (VL) and variable heavy (VH) fragments having a nucleophilic tyrosine at the base of the site. The depth and structure of the pocket are atypical of antibodies in general but can be compared qualitatively with the catalytic site of cholinesterases. A structurally disordered heavy chain complementary determining region 3 loop, constituting a wall of the cleft, is stabilized after covalent modification by hydrogen bonding to the phosphonate tropinol moiety. These features and presteady state kinetics analysis indicate that an induced fit mechanism operates in this reaction. Mutations of residues located in this stabilized loop do not interfere with direct contacts to the organophosphate ligand but can interrogate second shell interactions, because the H3 loop has a conformation adjusted for binding. Kinetic and thermodynamic parameters along with computational docking support the active site model, including plasticity and simple catalytic components. Although relatively uncomplicated, this catalytic machinery displays both stereo- and chemical selectivity. The organophosphate pesticide paraoxon is hydrolyzed by covalent catalysis with rate-limiting dephosphorylation. This reactibody is, therefore, a kinetically selected protein template that has enzyme-like catalytic attributes. PMID:21896761

Enhancement and Analysis of Human Antiaflatoxin B1 (AFB1) scFv Antibody-Ligand Interaction Using Chain Shuffling.

PubMed

Rangnoi, Kuntalee; Choowongkomon, Kiattawee; O'Kennedy, Richard; Rüker, Florian; Yamabhai, Montarop

2018-06-06

A human antiaflatoxin B1 (AFB1) scFv antibody (yAFB1-c3), selected from a naı̈ve human phage-displayed scFv library, was used as a template for improving and analysis of antibody-ligand interactions using the chain-shuffling technique. The variable-heavy and variable-light (VH/VL)-shuffled library was constructed from the VH of 25 preselected clones recombined with the VL of yAFB1-c3 and vice versa. Affinity selection from these libraries demonstrated that the VH domain played an important role in the binding of scFv to free AFB1. Therefore, in the next step, VH-shuffled scFv library was constructed from variable-heavy (VH) chain repertoires, amplified from the naı̈ve library, recombined with the variable-light (VL) chain of the clone yAFB1-c3. This library was then used to select a specific scFv antibody against soluble AFB1 by a standard biopanning method. Three clones that showed improved binding properties were isolated. Amino acid sequence analysis indicated that the improved clones have amino acid mutations in framework 1 (FR1) and the complementarity determining region (CDR1) of the VH chain. One clone, designated sAFH-3e3, showed 7.5-fold improvement in sensitivity over the original scFv clone and was selected for molecular binding studies with AFB1. Homology modeling and molecular docking were used to compare the binding of this and the original clones. The results confirmed that VH is more important than VL for AFB1 binding.

A flow cytometry-based strategy to identify and express IgM from VH1-69+ clonal peripheral B cells.

PubMed

Charles, Edgar D; Orloff, Michael I M; Dustin, Lynn B

2011-01-05

Pathologic rheumatoid factor (RF) levels are hallmarks of several human diseases. Production of monoclonal RF in vitro is essential for studies of the antigenic specificities of RF, as well as for a dissection of the mechanisms of aberrant RF+ B cell activation. We have expanded upon previous methods to develop a flow cytometry-based method to efficiently clone monoclonal antibodies (mAbs) from humans with expansions of RF-like, immunoglobulin heavy chain variable region (IgVH) 1-69 gene segment-containing B cells. The cloned variable regions are expressed as IgM and produced during culture at concentrations between 5 and 20 μg/ml. Using this system, we show that clonal Igs from patients with HCV-related mixed cryoglobulinemia, when expressed as IgM, have RF activity. We anticipate that this system will be useful for the cloning and expression of mAbs partially encoded by VH1-69 and for determination of the reactivity patterns of polyspecific, low-affinity IgMs of human pathogenic importance. Copyright © 2010 Elsevier B.V. All rights reserved.

Effect of light chain V region duplication on IgG oligomerization and in vivo efficacy.

PubMed

Shuford, W; Raff, H V; Finley, J W; Esselstyn, J; Harris, L J

1991-05-03

A human immunoglobulin G1 (IgG1) antibody oligomer was isolated from a transfected myeloma cell line that produced a monoclonal antibody to group B streptococci. Compared to the IgG1 monomer, the oligomer was significantly more effective at protecting neonatal rats from infection in vivo. The oligomer was also shown to cross the placenta and to be stable in neonatal rats. Immunochemical analysis and complementary DNA sequencing showed that the transfected cell line produced two distinct kappa light chains: a normal light chain (Ln) with a molecular mass of 25 kilodaltons and a 37-kilodalton species (L37), the domain composition of which was variable-variable-constant (V-V-C). Cotransfection of vectors encoding the heavy chain and L37 resulted in production of oligomeric IgG.

Tree ring reconstructed rainfall over the southern Amazon Basin

NASA Astrophysics Data System (ADS)

Lopez, Lidio; Stahle, David; Villalba, Ricardo; Torbenson, Max; Feng, Song; Cook, Edward

2017-07-01

Moisture sensitive tree ring chronologies of Centrolobium microchaete have been developed from seasonally dry forests in the southern Amazon Basin and used to reconstruct wet season rainfall totals from 1799 to 2012, adding over 150 years of rainfall estimates to the short instrumental record for the region. The reconstruction is correlated with the same atmospheric variables that influence the instrumental measurements of wet season rainfall. Anticyclonic circulation over midlatitude South America promotes equatorward surges of cold and relatively dry extratropical air that converge with warm moist air to form deep convection and heavy rainfall over this sector of the southern Amazon Basin. Interesting droughts and pluvials are reconstructed during the preinstrumental nineteenth and early twentieth centuries, but the tree ring reconstruction suggests that the strong multidecadal variability in instrumental and reconstructed wet season rainfall after 1950 may have been unmatched since 1799.

[Accumulation, distribution and pollution assessment of heavy metals in surface sediment of Caohai plateau wetland, Guizhou province].

PubMed

Zhang, Qing-Hai; Lin, Chang-Hu; Tan, Hong; Lin, Shao-Xia; Yang, Hong-Bo

2013-03-01

The objective of this paper is to investigate the concentrations and distribution characteristics of heavy metals in surface sediments of different areas in the Caohai plateau wetland. 16 samples of surface sediments were collected and 7 heavy metals were analyzed. Heavy metal pollution in surface sediments of different areas in the Caohai plateau wetland was estimated by the Tomlinson Pollution Load Index (PLI) method. The analyzed results indicated that the average contents of Cd, Hg, As, Pb, Cr, Cu, Zn were 0.985, 0.345, 15.8, 38.9, 38.6, 22.8 and 384 mg x kg(-1), respectively. The heavy metal distributions varied with regional environment changes, the order of average contents of Cd and Hg in different regions was E (the eastern region) > S (the southern region) > N (the northern region), the order of the average content of Pb was N > E > S, and that of Zn was S > E > N. The results also suggested a medium heavy metal pollution level in the surface sediment of the Caohai plateau wetland with the PLI(zone) reaching 1.17. The order of pollution level in surface sediments of different regions was E > S > N. The results showed medium pollution levels in E and Hg which reached the extreme intensity pollution level were also the major polluted elements in surface sediments of the Caohai plateau wetland. And also, results showed medium pollution levels of Cd and Pb in surface sediments of Caohai plateau wetland. Cluster analysis results showed similar pollution sources of Cd, Zn, Pb and Hg, which should be attached great importance in terms of the prevention of the Caohai plateau wetland.

Spatial Evaluation of Heavy Metals Concentrations in the Surface Sediment of Taihu Lake.

PubMed

Niu, Yong; Jiao, Wei; Yu, Hui; Niu, Yuan; Pang, Yong; Xu, Xiangyang; Guo, Xiaochun

2015-11-27

With regard to the size of China's freshwater lakes, Taihu Lake ranks third and it plays an important role in the supply of drinking water, flood prevention, farming and navigation, as well as in the travelling industry. The problem of environmental pollution has attracted widespread attention in recent years. In order to understand the levels, distribution and sources of heavy metals in sediments of Taihu Lake, random selection was carried out to obtain 59 samples of surface sediment from the entire lake and study the concentrations of Pb, Cd, Cu, Zn, Cr and Ni. Toxic units were also calculated to normalize the toxicities caused by various heavy metals. As a result, Cd and Cu in sediment were considered lower than the effect range low (ERL) at all regions where samples were gathered, while Pb and Ni were categorized into ERL-effect range median (ERM) at over 22% of the regions where samples were obtained. Nevertheless, all average concentrations of the samples were below the level of potential effect. According to the findings of this research, significant spatial heterogeneity existed in the above heavy metals. In conclusion, the distribution areas of heavy metals with higher concentrations were mainly the north bays, namely Zhushan Bay, Meiliang Bay as well as Gonghu Bay. The distribution areas of Cu, Zn, Cr and Ni with higher concentration also included the lake's central region, whereas the uniform distribution areas of those with lower concentrations were the lake's southeast region. In addition, it was most probable that the spatial distribution of heavy metals was determined by river inputs, whereas atmospheric precipitation caused by urban and traffic contamination also exerted considerable effects on the higher concentrations of Pb and Cd. Through evaluating the total amount of toxic units (ΣTU), it was found that higher toxicity existed primarily in the north bays and central region of the lake. If the heavy metals were sorted by the reduction of mean heavy metal toxic units in Taihu Lake in descending order, it would be Pb, Cr, Ni, Cd, Zn and Cu. Generally speaking, these result of analyses are conducive to alleviating the contamination of heavy metals in Taihu Lake.

The Response and Repairing of Three Kinds of Crops on Xi’an’s Sewage Irrigation Area Soil

NASA Astrophysics Data System (ADS)

Xin, H.; Zhimei, Z.; Lei, H.; Huan, L.; Tian, Z.

2017-10-01

This paper focuses on the XiChaZhai village’s vegetable soil which is located in the northern suburbs of Xi’an and on its vegetables, thus analyzes the quality of sewage irrigation region soil and its influence on vegetables through the measurement of Cu, Zn, Pb, Cd’s content in samples. The results show that the research area soil contains apparently excessive heavy metals, and there exists significant differences of different elements’ integrated intensity in soil, the content declines in sequence from Cd, Zn, Pb to Cu. The four heavy metals’ contents in sewage irrigation region soil vary greatly from that in non-sewage irrigation region soil(P<0.01). Raphanus sativus and Ottelia acuminate have favorable effects on Cd and Cu’s accumulation. Three crops having repairing effects on Xi’an sewage irrigation region soil are Raphanus sativus, Ottelia acuminate and Brassica chinensis, in that order. Different crop tissues differ in the accumulation of heavy metal, the order according as roots, stem and leaves, fruits. Therefore, based on differences of various crops on heavy metals’ absorption and translocation, appropriate crops should be scientifically planted in heavy metal contaminated area soil.

Evaluation of Microphysics and Cumulus Schemes of WRF for Forecasting of Heavy Monsoon Rainfall over the Southeastern Hilly Region of Bangladesh

NASA Astrophysics Data System (ADS)

Hasan, Md Alfi; Islam, A. K. M. Saiful

2018-05-01

Accurate forecasting of heavy rainfall is crucial for the improvement of flood warning to prevent loss of life and property damage due to flash-flood-related landslides in the hilly region of Bangladesh. Forecasting heavy rainfall events is challenging where microphysics and cumulus parameterization schemes of Weather Research and Forecast (WRF) model play an important role. In this study, a comparison was made between observed and simulated rainfall using 19 different combinations of microphysics and cumulus schemes available in WRF over Bangladesh. Two severe rainfall events during 11th June 2007 and 24-27th June 2012, over the eastern hilly region of Bangladesh, were selected for performance evaluation using a number of indicators. A combination of the Stony Brook University microphysics scheme with Tiedtke cumulus scheme is found as the most suitable scheme for reproducing those events. Another combination of the single-moment 6-class microphysics scheme with New Grell 3D cumulus schemes also showed reasonable performance in forecasting heavy rainfall over this region. The sensitivity analysis confirms that cumulus schemes play a greater role than microphysics schemes for reproducing the heavy rainfall events using WRF.

Distortion in fingerprints: a statistical investigation using shape measurement tools.

PubMed

Sheets, H David; Torres, Anne; Langenburg, Glenn; Bush, Peter J; Bush, Mary A

2014-07-01

Friction ridge impression appearance can be affected due to the type of surface touched and pressure exerted during deposition. Understanding the magnitude of alterations, regions affected, and systematic/detectable changes occurring would provide useful information. Geometric morphometric techniques were used to statistically characterize these changes. One hundred and fourteen prints were obtained from a single volunteer and impressed with heavy, normal, and light pressure on computer paper, soft gloss paper, 10-print card stock, and retabs. Six hundred prints from 10 volunteers were rolled with heavy, normal, and light pressure on soft gloss paper and 10-print card stock. Results indicate that while different substrates/pressure levels produced small systematic changes in fingerprints, the changes were small in magnitude: roughly the width of one ridge. There were no detectable changes in the degree of random variability of prints associated with either pressure or substrate. In conclusion, the prints transferred reliably regardless of pressure or substrate. © 2014 American Academy of Forensic Sciences.

Atmospheric circulation patterns associated to the variability of River Ammer floods: evidence from observed and proxy data

NASA Astrophysics Data System (ADS)

Rimbu, N.; Czymzik, M.; Ionita, M.; Lohmann, G.; Brauer, A.

2015-09-01

The relationship between the frequency of River Ammer floods (southern Germany) and atmospheric circulation variability is investigated based on observational Ammer discharge data back to 1926 and a flood layer time series from varved sediments of the downstream Lake Ammersee for the pre-instrumental period back to 1766. A composite analysis reveals that, at synoptic time scales, observed River Ammer floods are associated with enhanced moisture transport from the Atlantic Ocean and the Mediterranean towards the Ammer region, a pronounced trough over Western Europe as well as enhanced potential vorticity at upper levels. We argue that this synoptic scale configuration can trigger heavy precipitation and floods in the Ammer region. Interannual to multidecadal increases in flood frequency as recorded in the instrumental discharge record are associated to a wave-train pattern extending from the North Atlantic to western Asia with a prominent negative center over western Europe. A similar atmospheric circulation pattern is associated to increases in flood layer frequency in the Lake Ammersee sediment record during the pre-instrumental period. We argue that the complete flood layer time-series from Lake Ammersee sediments covering the last 5500 years, contains information about atmospheric circulation variability on inter-annual to millennial time-scales.

Reply to 'Comment on 'Heavy element production in inhomogeneous big bang nucleosynthesis''

DOE Office of Scientific and Technical Information (OSTI.GOV)

Matsuura, Shunji; Fujimoto, Shin-ichirou; Hashimoto, Masa-aki

2007-03-15

This is a reply to Rauscher [Phys. Rev. D 75, 068301 (2007)]. We studied heavy element production in the high baryon density region in the early universe [Phys. Rev. D 72, 123505 (2005)]. However, it is claimed by Rauscher [Phys. Rev. D 75, 068301 (2007)] that a small scale but high baryon density region contradicts observations for the light element abundance or, in order not to contradict the observations, the high density region must be so small that it cannot affect the present heavy element abundance. In this paper, we study big bang nucleosynthesis in the high baryon density regionmore » and show that in certain parameter spaces it is possible to produce enough of the heavy element without contradiction to cosmic microwave background and light element observations.« less

Clinical and molecular predictors of disease severity and survival in chronic lymphocytic leukemia.

PubMed

Weinberg, J Brice; Volkheimer, Alicia D; Chen, Youwei; Beasley, Bethany E; Jiang, Ning; Lanasa, Mark C; Friedman, Daphne; Vaccaro, Gina; Rehder, Catherine W; Decastro, Carlos M; Rizzieri, David A; Diehl, Louis F; Gockerman, Jon P; Moore, Joseph O; Goodman, Barbara K; Levesque, Marc C

2007-12-01

Several parameters may predict disease severity and overall survival in chronic lymphocytic leukemia (CLL). The purpose of our study of 190 CLL patients was to compare immunoglobulin heavy chain variable region (IgV(H)) mutation status, cytogenetic abnormalities, and leukemia cell CD38 and Zap-70 to older, traditional parameters. We also wanted to construct a simple, inexpensive prognosis score that would significantly predict TTT and survival in patients at the time of diagnosis and help practicing clinicians. In univariate analyses, patients with higher clinical stage, higher leukocyte count at diagnosis, shorter leukocyte doubling time, elevated serum lactate dehydrogenase (LDH), unmutated immunoglobulin heavy chain variable region (IgV(H)) genes, and higher CD38 had a shorter overall survival and time-to-treatment (TTT). CLL cell Zap-70 expression was higher in patients with unmutated IgV(H), and those with higher Zap-70 tended to have shorter survival. IgV(H)4-34 or IgV(H)1-69 was the most common IgV(H) genes used (16 and 12%, respectively). Of those with IgV(H)1-69, 86% had unmutated IgV(H) and had a significantly shorter TTT. A cytogenetic abnormality was noted in 71% of the patients tested. Patients with 11q22 del and 17p13 del or complex abnormalities were significantly more likely to have unmutated IgV(H). We found that a prognostic score constructed using modified Rai stage, cellular CD38, and serum LDH (parameters easily obtained clinically) significantly predicted TTT and survival in patients at the time of diagnosis and performed as well or better than models using the newer markers.

Spring Soil Temperature Anomalies over Northwest U.S. and later Spring-Summer Droughts/Floods over Southern Plains and Adjacent Areas

NASA Astrophysics Data System (ADS)

Xue, Y.; Diallo, I.; Li, W.; Neelin, J. D.; Chu, P. C.; Vasic, R.; Zhu, Y.; LI, Q.; Robinson, D. A.

2017-12-01

Recurrent droughts/floods are high-impact meteorological events. Many studies have attributed these episodes to variability and anomaly of global sea surface temperatures (SST). However, studies have consistently shown that SST along is unable to fully explain the extreme climate events. Remote effects of large-scale spring land surface temperature (LST) and subsurface temperature (SUBT) variability in Northwest U.S. over the Rocky Mountain area on later spring-summer droughts/floods over the Southern Plains and adjacent areas, however, have been largely ignored. In this study, evidence from climate observations and model simulations addresses these effects. The Maximum Covariance Analysis of observational data identifies that a pronounce spring LST anomaly pattern over Northwest U.S. is closely associated with summer precipitation anomalies in Southern Plains: negative/positive spring LST anomaly is associated with the summer drought/flood over the Southern Plains. The global and regional weather forecast models were used to demonstrate a causal relationship. The modeling study suggests that the observed LST and SUBT anomalies produced about 29% and 31% of observed May 2015 heavy precipitation and June 2011 precipitation deficit, respectively. The analyses discovered that the LST/SUBT's downstream effects are associated with a large-scale atmospheric stationary wave extending eastward from the LST/SUBT anomaly region. For comparison, the SST effect was also tested and produced about 31% and 45% of the May 2015 heavy precipitation and June 2011 drought conditions, respectively. This study suggests that consideration of both SST and LST/SUBT anomalies are able to explain a substantial amount of variance in precipitation at sub-seasonal scale and inclusion of the LST/SUBT effect is essential to make reliable sub-seasonal and seasonal North American drought/flood predictions.

Blowing snow detection from ground-based ceilometers: application to East Antarctica

NASA Astrophysics Data System (ADS)

Gossart, Alexandra; Souverijns, Niels; Gorodetskaya, Irina V.; Lhermitte, Stef; Lenaerts, Jan T. M.; Schween, Jan H.; Mangold, Alexander; Laffineur, Quentin; van Lipzig, Nicole P. M.

2017-12-01

Blowing snow impacts Antarctic ice sheet surface mass balance by snow redistribution and sublimation. However, numerical models poorly represent blowing snow processes, while direct observations are limited in space and time. Satellite retrieval of blowing snow is hindered by clouds and only the strongest events are considered. Here, we develop a blowing snow detection (BSD) algorithm for ground-based remote-sensing ceilometers in polar regions and apply it to ceilometers at Neumayer III and Princess Elisabeth (PE) stations, East Antarctica. The algorithm is able to detect (heavy) blowing snow layers reaching 30 m height. Results show that 78 % of the detected events are in agreement with visual observations at Neumayer III station. The BSD algorithm detects heavy blowing snow 36 % of the time at Neumayer (2011-2015) and 13 % at PE station (2010-2016). Blowing snow occurrence peaks during the austral winter and shows around 5 % interannual variability. The BSD algorithm is capable of detecting blowing snow both lifted from the ground and occurring during precipitation, which is an added value since results indicate that 92 % of the blowing snow is during synoptic events, often combined with precipitation. Analysis of atmospheric meteorological variables shows that blowing snow occurrence strongly depends on fresh snow availability in addition to wind speed. This finding challenges the commonly used parametrizations, where the threshold for snow particles to be lifted is a function of wind speed only. Blowing snow occurs predominantly during storms and overcast conditions, shortly after precipitation events, and can reach up to 1300 m a. g. l. in the case of heavy mixed events (precipitation and blowing snow together). These results suggest that synoptic conditions play an important role in generating blowing snow events and that fresh snow availability should be considered in determining the blowing snow onset.

Relationships between income inequality and health: a study on rural and urban regions of Canada.

PubMed

Vafaei, Afshin; Rosenberg, Mark W; Pickett, William

2010-01-01

Many studies have demonstrated that health is a function of relative and not absolute income within populations. Canadian studies are not conclusive; most indicate that there is no relationship between income inequality and health within Canada. There is a need for further investigation into the validity of the 'relative income' hypothesis in the Canadian population. The primary objective of this research was to test the 'relative income' hypothesis across Canadian health regions. The second objective was to extend the hypothesis to consider rural versus urban populations. This research involved ecological analyses. The source of the data was the Canadian Community Health Survey, Cycle 3.1. The units of analysis were Canadian health regions. Health of a region was estimated as the percentage of people who rated their health as good or excellent. The primary exposure variable was the ratio of people whose personal income was less than $15,000 relative to those reporting more than $80,000 in the year preceding the survey. This ratio provided a measure of the distribution of income. The main covariates were ecological measures of socio-demographic variables, social capital, substance use behaviours (smoking and alcohol consumption), rural/urban status of the region, and absolute income in the region. Correlation analyses and multiple linear regressions were performed to ascertain the relationship between income inequality and population health, adjusting for important covariates. The measure of income inequality alone appeared to explain 18% of the variability in the measure of population health. However, after adding the measure of absolute income to the model, although 29% of the variability was explained, the independent contribution of the inequality measure became non-significant. Linear regression models suggested that the absolute income variable alone could explain 30% of the variance in the health status of populations. Other variables with a statistically significant contribution to the final model were education and alcohol consumption. The effect of rural/urban geographic status on the relationship of interest was similar to other covariates. This variable did not change the individual relationship between income inequality or absolute income and the measure of population health status. In both rural and urban regions, absolute income and education had positive effects on population health. In urban regions alcohol consumption was a significant negative contributor to population health status; whereas, in rural regions, smoking status had a significant negative effect on population health status. Across Canadian health regions, health status in populations was a function of absolute income but not relative income. Regions with higher levels of education had better levels of self-rated health. A larger percentage of heavy drinkers was also correlated with lower population health status. Findings were consistently observed in rural and urban populations. The study findings have implications for public health, economic, and social policies.

Self-reported hard physical work combined with heavy smoking or overweight may result in so-called Modic changes.

PubMed

Leboeuf-Yde, Charlotte; Kjaer, Per; Bendix, Tom; Manniche, Claus

2008-01-14

Recently, the MRI finding of "Modic changes" has been identified as pathologic spinal condition that probably reflects a vertebral inflammatory process (VIP), which coincides with spinal pain in most. We hypothesized that heavy smoking in combination with macro- or repeated microtrauma could lead to VIP. The objectives were to investigate if combinations of self-reported heavy smoking, hard physical work, and overweight would be more strongly linked with VIP than with other spinal conditions, such as degenerated discs and non-specific low back pain (LBP). Secondary analysis was made of a data base pertaining to a population-based cross-sectional study. A population-generated cohort of 412 40-yr old Danes provided questionnaire information on smoking, weight, height, type of work, and LBP. MRI was used to determine the presence/absence of disc degeneration and of VIP. Associations were tested between three explanatory variables (type of work, smoking, and body mass index) and four outcome variables (LBP in the past year, more persistent LBP in the past year, disc degeneration, and VIP). Associations with these four outcome variables were studied for each single explanatory variable and for combinations of two at a time, and, finally, in a multivariable analysis including all three explanatory variables. There were no significant associations between the single explanatory variables and the two pain variables or with disc degeneration. However, VIP was found in 15% of non-smokers vs. 26% of heavy smokers. Similarly, VIP was noted in 11% of those in sedentary jobs vs. 31% of those with hard physical work. Further, the prevalence of VIP in those, who neither smoked heavily nor had a hard physical job was 13%, 25% in those who either smoked heavily or had a hard physical job, and 41% in those who both smoked heavily and worked hard. The odds ratio was 4.9 (1.6-13.0) for those who were both heavy smokers and had a hard physical job as compared to those who were classified as "neither". Similar but weaker findings were noted for the combination of overweight and hard physical work but not for the combination of smoking and overweight. Hard physical work in combination with either heavy smoking or overweight is strongly associated with VIP. If this finding can be reproduced in other studies, it may have consequences in relation to both primary and secondary prevention of LBP, because blue collar workers, who are most likely to experience the consequences of LBP, also are those who are most likely to smoke.

Comprehensive characterization of immunoglobulin gene rearrangements in patients with chronic lymphocytic leukaemia

PubMed Central

René, Céline; Prat, Nathalie; Thuizat, Audrey; Broctawik, Mélanie; Avinens, Odile; Eliaou, Jean-François

2014-01-01

Previous studies have suggested a geographical pattern of immunoglobulin rearrangement in chronic lymphocytic leukaemia (CLL), which could be as a result of a genetic background or an environmental antigen. However, the characteristics of Ig rearrangements in the population from the South of France have not yet been established. Here, we studied CLL B-cell repertoire and mutational pattern in a Southern French cohort of patients using an in-house protocol for whole sequencing of the rearranged immunoglobulin heavy-chain genes. Described biased usage of variable, diversity and joining genes between the mutated and unmutated groups was found in our population. However, variable gene frequencies are more in accordance with those observed in the Mediterranean patients. We found that the third complementary-determining region (CDR) length was higher in unmutated sequences, because of bias in the diversity and joining genes usage and not due to the N diversity. Mutations found in CLL followed the features of canonical somatic hypermutation mechanism: preference of targeting for activation-induced cytidine deaminase and polymerase motifs, base change bias for transitions and more replacement mutations occurring in CDRs than in framework regions. Surprisingly, localization of activation-induced cytidine deaminase motifs onto the variable gene showed a preference for framework regions. The study of the characteristics at the age of diagnosis showed no difference in clinical outcome, but suggested a tendency of increased replacement and transition-over-transversion mutations and a longer third CDR length in older patients. PMID:24725733

Highlights from PHENIX at RHIC

NASA Astrophysics Data System (ADS)

Nouicer, Rachid

2018-02-01

Hadrons conveying strange quarks or heavy quarks are essential probes of the hot and dense medium created in relativistic heavy-ion collisions. With hidden strangeness, ϕ meson production and its transport in the nuclear medium have attracted high interest since its discovery. Heavy quark-antiquark pairs, like charmonium and bottomonium mesons, are mainly produced in initial hard scattering processes of partons. While some of the produced pairs form bound quarkonia, the vast majority hadronize into particles carrying open heavy flavor. In this context, the PHENIX collaboration carries out a comprehensive physics program which studies the ϕ meson production, and heavy flavor production in relativistic heavy-ion collisions at RHIC. In recent years, the PHENIX experiment upgraded the detector in installing silicon vertex tracker (VTX) at mid-rapidity region and forward silicon vertex tracker (FVTX) at the forward rapidity region. With these new upgrades, the experiment has collected large data samples, and enhanced the capability of heavy flavor measurements via precision tracking. This paper summarizes the latest PHENIX results concerning ϕ meson, open and closed charm and beauty heavy quark production in relativistic heavy-ion collisions. These results are presented as a function of rapidity, energy and system size, and their interpretation with respect to the current theoretical understanding.

Source origin and parameters influencing levels of heavy metals in TSP, in an industrial background area of Southern Italy

NASA Astrophysics Data System (ADS)

Ragosta, Maria; Caggiano, Rosa; D'Emilio, Mariagrazia; Macchiato, Maria

In this paper, we investigate the relationships among atmospheric concentration of trace elements and some meteorological parameters. In particular, the effects of different meteorological conditions on heavy metal levels are interpreted by means of a multivariate statistical approach. The analysed variables were measured during a monitoring survey that started in 1997, and this survey was carried out in order to evaluate the atmospheric concentrations of heavy metals in the industrial area of Tito Scalo (Basilicata Region, Southern Italy). Here we present and analyse the data set collected from 1997 to 1999. The data set includes daily concentrations of total suspended particulates (TSP), daily concentrations of eight metals (Cd, Cr, Cu, Fe, Mn, Ni, Pb and Zn) in TSP and daily meteoclimatic data (temperature, rainfall, speed and wind directions). Both the concentration level and the occurrence of peak concentration events are consistent with the characteristics of the study area: abundant small and medium industrial plants in a mountainous and unpolluted zone. Regarding the origin of sources of heavy metals in TSP, the statistical procedure allows us to identify three profiles: SP 1 and SP 2 related to industrial sources and SP 3 related to other sources (natural and/or anthropogenic). In particular, taking into account the effect of different meteorological conditions, we are able to distinguish the contribution of different fractions of the same metal in the detected source profiles.

Spatiotemporal Variability of Surface Meteorological Variables During Fog and No-Fog Events in the Heber Valley, UT; Selected Case Studies From MATERHORN-Fog

NASA Astrophysics Data System (ADS)

van den Bossche, Michael; De Wekker, Stephan F. J.

2016-09-01

We investigated the spatiotemporal variability of surface meteorological variables in the nocturnal boundary layer using six automatic weather stations deployed in the Heber Valley, UT, during the MATERHORN-Fog experiment. The stations were installed on the valley floor within a 1.5 km × 0.8 km area and collected 1-Hz wind and pressure data and 0.2-Hz temperature and humidity data. We describe the weather stations and analyze the spatiotemporal variability of the measured variables during three nights with radiative cooling. Two nights were characterized by the presence of dense ice fog, one night with a persistent (`heavy') fog, and one with a short-lived (`moderate') fog, while the third night had no fog. Frost-point depressions were larger preceding the night without fog and showed a continued decrease during the no-fog night. On both fog nights, the frost-point depression reached values close to zero early in the night, but ~5 h earlier on the heavy-fog night than on the moderate-fog night. Spatial variability of temperature and humidity was smallest during the heavy-fog night and increased temporarily during short periods when wind speeds increased and the fog lifted. During all three nights, wind speeds did not exceed 2 m/s. The temporal variability of the wind speed and direction was larger during the fog nights than during the no-fog nights, but was particularly large during the heavy-fog night. The large variability corresponded with short-lived (5-10 min) pressure variations with amplitudes on the order of 0.5 hPa, indicating gravity wave activity. These pressure fluctuations occurred at all stations and were correlated in particular with variability in wind direction. Although not able to provide a complete picture of the nocturnal boundary layer, our low-cost weather stations were able to continuously collect data that were comparable to those of nearby research-grade instruments. From these data, we distinguished between fog and no-fog events, successfully quantified spatiotemporal variations in surface properties during these events, and detected gravity waves.

Large-scale sequence and structural comparisons of human naive and antigen-experienced antibody repertoires.

PubMed

DeKosky, Brandon J; Lungu, Oana I; Park, Daechan; Johnson, Erik L; Charab, Wissam; Chrysostomou, Constantine; Kuroda, Daisuke; Ellington, Andrew D; Ippolito, Gregory C; Gray, Jeffrey J; Georgiou, George

2016-05-10

Elucidating how antigen exposure and selection shape the human antibody repertoire is fundamental to our understanding of B-cell immunity. We sequenced the paired heavy- and light-chain variable regions (VH and VL, respectively) from large populations of single B cells combined with computational modeling of antibody structures to evaluate sequence and structural features of human antibody repertoires at unprecedented depth. Analysis of a dataset comprising 55,000 antibody clusters from CD19(+)CD20(+)CD27(-) IgM-naive B cells, >120,000 antibody clusters from CD19(+)CD20(+)CD27(+) antigen-experienced B cells, and >2,000 RosettaAntibody-predicted structural models across three healthy donors led to a number of key findings: (i) VH and VL gene sequences pair in a combinatorial fashion without detectable pairing restrictions at the population level; (ii) certain VH:VL gene pairs were significantly enriched or depleted in the antigen-experienced repertoire relative to the naive repertoire; (iii) antigen selection increased antibody paratope net charge and solvent-accessible surface area; and (iv) public heavy-chain third complementarity-determining region (CDR-H3) antibodies in the antigen-experienced repertoire showed signs of convergent paired light-chain genetic signatures, including shared light-chain third complementarity-determining region (CDR-L3) amino acid sequences and/or Vκ,λ-Jκ,λ genes. The data reported here address several longstanding questions regarding antibody repertoire selection and development and provide a benchmark for future repertoire-scale analyses of antibody responses to vaccination and disease.

The Association between Regional Environmental Factors and Road Trauma Rates: A Geospatial Analysis of 10 Years of Road Traffic Crashes in British Columbia, Canada

PubMed Central

Brubacher, Jeffrey R.; Chan, Herbert; Erdelyi, Shannon; Schuurman, Nadine; Amram, Ofer

2016-01-01

Background British Columbia, Canada is a geographically large jurisdiction with varied environmental and socio-cultural contexts. This cross-sectional study examined variation in motor vehicle crash rates across 100 police patrols to investigate the association of crashes with key explanatory factors. Methods Eleven crash outcomes (total crashes, injury crashes, fatal crashes, speed related fatal crashes, total fatalities, single-vehicle night-time crashes, rear-end collisions, and collisions involving heavy vehicles, pedestrians, cyclists, or motorcyclists) were identified from police collision reports and insurance claims and mapped to police patrols. Six potential explanatory factors (intensity of traffic law enforcement, speed limits, climate, remoteness, socio-economic factors, and alcohol consumption) were also mapped to police patrols. We then studied the association between crashes and explanatory factors using negative binomial models with crash count per patrol as the response variable and explanatory factors as covariates. Results Between 2003 and 2012 there were 1,434,239 insurance claim collisions, 386,326 police reported crashes, and 3,404 fatal crashes. Across police patrols, there was marked variation in per capita crash rate and in potential explanatory factors. Several factors were associated with crash rates. Percent roads with speed limits ≤ 60 km/hr was positively associated with total crashes, injury crashes, rear end collisions, and collisions involving pedestrians, cyclists, and heavy vehicles; and negatively associated with single vehicle night-time crashes, fatal crashes, fatal speeding crashes, and total fatalities. Higher winter temperature was associated with lower rates of overall collisions, single vehicle night-time collisions, collisions involving heavy vehicles, and total fatalities. Lower socio-economic status was associated with higher rates of injury collisions, pedestrian collisions, fatal speeding collisions, and fatal collisions. Regions with dedicated traffic officers had fewer fatal crashes and fewer fatal speed related crashes but more rear end crashes and more crashes involving cyclists or pedestrians. The number of traffic citations per 1000 drivers was positively associated with total crashes, fatal crashes, total fatalities, fatal speeding crashes, injury crashes, single vehicle night-time crashes, and heavy vehicle crashes. Possible explanations for these associations are discussed. Conclusions There is wide variation in per capita rates of motor vehicle crashes across BC police patrols. Some variation is explained by factors such as climate, road type, remoteness, socioeconomic variables, and enforcement intensity. The ability of explanatory factors to predict crash rates would be improved if considered with local traffic volume by all travel modes. PMID:27099930

cDNA sequences and organization of IgM heavy chain genes in two holostean fish.

PubMed

Wilson, M R; van Ravenstein, E; Miller, N W; Clem, L W; Middleton, D L; Warr, G W

1995-01-01

Immunoglobulin M heavy chain (mu) sequences of two holostean fish, the bowfin, Amia calva, and the longnose gar, Lepisosteus osseus, were amplified from spleen mRNA by RACE-PCR, cloned, and sequenced. Each mu chain showed the conserved four constant domain structure typical of a secreted mu chain. Southern blot analyses with specific heavy chain variable (VH) and constant (CH) region probes suggest that both fish possess an IgH locus that resembles that of the teleosts, amphibians, and mammals in its organization. The overall sequence similarity of gar and bowfin mu chains was 60% and 48% at the nucleotide and amino acid levels, respectively, while similarity to the mu chains of teleosts and elasmobranchs was lower. The bowfin mu chain possesses a distinctive proline-rich sequence at the C mu 1/C mu 2 boundary; a shorter proline-rich sequence is present at this position in the gar mu chain. Both gar and bowfin show, in their C mu 4 sequences, motifs that could serve as cryptic splice donor sites for the production of mRNA encoding the membrane-bound form of the mu chains, and the bowfin also shows a potential cryptic splice donor site in the C mu 3 exon.

Ion Traps at the Sun: Implications for Elemental Fractionation

NASA Astrophysics Data System (ADS)

Fleishman, Gregory D.; Musset, Sophie; Bommier, Véronique; Glesener, Lindsay

2018-04-01

Why the tenuous solar outer atmosphere, or corona, is much hotter than the underlying layers remains one of the greatest challenges for solar modeling. Detailed diagnostics of the coronal thermal structure come from extreme ultraviolet (EUV) emission. The EUV emission is produced by heavy ions in various ionization states and depends on the amount of these ions and on plasma temperature and density. Any nonuniformity of the elemental distribution in space or variability in time affects thermal diagnostics of the corona. Here we theoretically predict ionized chemical element concentrations in some areas of the solar atmosphere, where the electric current is directed upward. We then detect these areas observationally, by comparing the electric current density with the EUV brightness in an active region. We found a significant excess in EUV brightness in the areas with positive current density rather than negative. Therefore, we report the observational discovery of substantial concentrations of heavy ions in current-carrying magnetic flux tubes, which might have important implications for the elemental fractionation in the solar corona known as the first ionization potential effect. We call such areas of heavy ion concentration the “ion traps.” These traps hold enhanced ion levels until they are disrupted by a flare, whether large or small.

Seasonal distribution and contamination levels of total PHCs, PAHs and heavy metals in coastal waters of the Alang-Sosiya ship scrapping yard, Gulf of Cambay, India.

PubMed

Srinivasa Reddy, M; Basha, Shaik; Joshi, H V; Ramachandraiah, G

2005-12-01

Alang-Sosiya situated on the Gulf of Cambay is one of the largest ship breaking yard in the world. The seasonal distribution and contamination levels of dissolved and/or dispersed total petroleum hydrocarbons (PHCs), total polycyclic aromatic hydrocarbons (PAHs) and heavy metals in seawater during high tide are investigated. The concentrations of petroleum hydrocarbons and heavy metals are higher in the winter than in the monsoon and summer. The concentrations of total PHCs and PAHs are about three times higher in the winter and two times in the monsoon or summer at Along-Sosiya and about twice in all seasons at two stations one on either side 5 km away from it as compared to the reference station at Mahuva, 60 km away towards the south. Further, the levels of PHCs are correlated with salinity and compared with those of other regions. The concentration of all metals is the highest in the winter season followed by the monsoon and summer. We carried out the quantitative analysis of the possible relationships among 13 variables such as Al, Fe, Pb, Mn, Cu, Zn, Cd, Cr, Co, pH, NO3-, NO2 and PO4(3-).

Relationships between magnetic susceptibility and heavy metals in urban topsoils in the arid region of Isfahan, central Iran

NASA Astrophysics Data System (ADS)

Karimi, Rezvan; Ayoubi, Shamsollah; Jalalian, Ahmad; Sheikh-Hosseini, Ahmad Reza; Afyuni, Majid

2011-05-01

Recently methods dealing with magnetometry have been proposed as a proper proxy for assessing the heavy metal pollution of soils. A total of 113 topsoil samples were collected from public parks and green strips along the rim of roads with high-density traffic within the city of Isfahan, central Iran. The magnetic susceptibility (χ) of the collected soil samples was measured at both low and high frequency (χlf and χhf) using the Bartington MS2 dual frequency sensor. As, Cd, Cr, Ba, Cu, Mn, Pb, Zn, Sr and V concentrations were measured in the all collected soil samples. Significant correlations were found between Zn and Cu (0.85) and between Zn and Pb (0.84). The χfd value of urban topsoil varied from 0.45% to 7.7%. Low mean value of χfd indicated that the magnetic properties of the samples are predominately contributed by multi-domain grains, rather than by super-paramagnetic particles. Lead, Cu, Zn, and Ba showed positive significant correlations with magnetic susceptibility, but As, Sr, Cd, Mn, Cr and V, had no significant correlation with the magnetic susceptibility. There was a significant correlation between pollution load index (PLI) and χlf. PLI was computed to evaluate the soil environmental quality of selected heavy metals. Moreover, the results of multiple regression analysis between χlf and heavy metal concentrations indicated the LnPb, V and LnCu could explain approximately 54% of the total variability of χlf in the study area. These results indicate the potential of the magnetometric methods to evaluate the heavy metal pollution of soils.

Spatial variability and geochemistry of rare earth elements in soils from the largest uranium-phosphate deposit of Brazil.

PubMed

Cunha, Cleyton Saialy Medeiros; da Silva, Ygor Jacques Agra Bezerra; Escobar, Maria Eugenia Ortiz; do Nascimento, Clístenes Williams Araújo

2018-02-22

The Itataia uranium-phosphate deposit is the largest uranium reserve in Brazil. Rare earth elements (REEs) are commonly associated with phosphate deposits; however, there are no studies on the concentrations of REEs in soils of the Itataia deposit region. Thus, the objective of the research was to evaluate the concentration and spatial variability of REEs in topsoils of Itataia phosphate deposit region. In addition, the influence of soil properties on the geochemistry of REEs was investigated. Results showed that relatively high mean concentrations (mg kg -1 ) of heavy REEs (Gd 6.01; Tb 1.25; Ho 1.15; Er 4.05; Tm 0.64; Yb 4.61; Lu 0.65) were found in surface soils samples. Soil properties showed weak influence on the geochemical behavior of REEs in soils, except for the clay content. On the other hand, parent material characteristics, such as P and U, had strong influence on REEs concentrations. Spatial distribution patterns of REEs in soils are clearly associated with P and U contents. Therefore, geochemical surveys aiming at the delineation of ore-bearing zones in the region can benefit from our data. The results of this work reinforce the perspective for co-mining of P, U and REEs in this important P-U reserve.

Heavy Ion Irradiation Fluence Dependence for Single-Event Upsets of NAND Flash Memory

NASA Technical Reports Server (NTRS)

Chen, Dakai; Wilcox, Edward; Ladbury, Raymond; Kim, Hak; Phan, Anthony; Seidleck, Christina; LaBel, Kenneth

2016-01-01

We investigated the single-event effect (SEE) susceptibility of the Micron 16 nm NAND flash, and found the single-event upset (SEU) cross section varied inversely with fluence. The SEU cross section decreased with increasing fluence. We attribute the effect to the variable upset sensitivities of the memory cells. The current test standards and procedures assume that SEU follow a Poisson process and do not take into account the variability in the error rate with fluence. Therefore, heavy ion irradiation of devices with variable upset sensitivity distribution using typical fluence levels may underestimate the cross section and on-orbit event rate.

Heavy and Heavy-Light Mesons in the Covariant Spectator Theory

NASA Astrophysics Data System (ADS)

Stadler, Alfred; Leitão, Sofia; Peña, M. T.; Biernat, Elmar P.

2018-05-01

The masses and vertex functions of heavy and heavy-light mesons, described as quark-antiquark bound states, are calculated with the Covariant Spectator Theory (CST). We use a kernel with an adjustable mixture of Lorentz scalar, pseudoscalar, and vector linear confining interaction, together with a one-gluon-exchange kernel. A series of fits to the heavy and heavy-light meson spectrum were calculated, and we discuss what conclusions can be drawn from it, especially about the Lorentz structure of the kernel. We also apply the Brodsky-Huang-Lepage prescription to express the CST wave functions for heavy quarkonia in terms of light-front variables. They agree remarkably well with light-front wave functions obtained in the Hamiltonian basis light-front quantization approach, even in excited states.

The effects of auditory stimulation with music on heart rate variability in healthy women.

PubMed

Roque, Adriano L; Valenti, Vitor E; Guida, Heraldo L; Campos, Mônica F; Knap, André; Vanderlei, Luiz Carlos M; Ferreira, Lucas L; Ferreira, Celso; Abreu, Luiz Carlos de

2013-07-01

There are no data in the literature with regard to the acute effects of different styles of music on the geometric indices of heart rate variability. In this study, we evaluated the acute effects of relaxant baroque and excitatory heavy metal music on the geometric indices of heart rate variability in women. We conducted this study in 21 healthy women ranging in age from 18 to 35 years. We excluded persons with previous experience with musical instruments and persons who had an affinity for the song styles. We evaluated two groups: Group 1 (n = 21), who were exposed to relaxant classical baroque musical and excitatory heavy metal auditory stimulation; and Group 2 (n = 19), who were exposed to both styles of music and white noise auditory stimulation. Using earphones, the volunteers were exposed to baroque or heavy metal music for five minutes. After the first music exposure to baroque or heavy metal music, they remained at rest for five minutes; subsequently, they were re-exposed to the opposite music (70-80 dB). A different group of women were exposed to the same music styles plus white noise auditory stimulation (90 dB). The sequence of the songs was randomized for each individual. We analyzed the following indices: triangular index, triangular interpolation of RR intervals and Poincaré plot (standard deviation of instantaneous beat-by-beat variability, standard deviation of the long-term RR interval, standard deviation of instantaneous beat-by-beat variability and standard deviation of the long-term RR interval ratio), low frequency, high frequency, low frequency/high frequency ratio, standard deviation of all the normal RR intervals, root-mean square of differences between the adjacent normal RR intervals and the percentage of adjacent RR intervals with a difference of duration greater than 50 ms. Heart rate variability was recorded at rest for 10 minutes. The triangular index and the standard deviation of the long-term RR interval indices were reduced during exposure to both music styles in the first group and tended to decrease in the second group whereas the white noise exposure decreased the high frequency index. We observed no changes regarding the triangular interpolation of RR intervals, standard deviation of instantaneous beat-by-beat variability and standard deviation of instantaneous beat-by-beat variability/standard deviation in the long-term RR interval ratio. We suggest that relaxant baroque and excitatory heavy metal music slightly decrease global heart rate variability because of the equivalent sound level.

The effects of auditory stimulation with music on heart rate variability in healthy women

PubMed Central

Roque, Adriano L.; Valenti, Vitor E.; Guida, Heraldo L.; Campos, Mônica F.; Knap, André; Vanderlei, Luiz Carlos M.; Ferreira, Lucas L.; Ferreira, Celso; de Abreu, Luiz Carlos

2013-01-01

OBJECTIVES: There are no data in the literature with regard to the acute effects of different styles of music on the geometric indices of heart rate variability. In this study, we evaluated the acute effects of relaxant baroque and excitatory heavy metal music on the geometric indices of heart rate variability in women. METHODS: We conducted this study in 21 healthy women ranging in age from 18 to 35 years. We excluded persons with previous experience with musical instruments and persons who had an affinity for the song styles. We evaluated two groups: Group 1 (n = 21), who were exposed to relaxant classical baroque musical and excitatory heavy metal auditory stimulation; and Group 2 (n = 19), who were exposed to both styles of music and white noise auditory stimulation. Using earphones, the volunteers were exposed to baroque or heavy metal music for five minutes. After the first music exposure to baroque or heavy metal music, they remained at rest for five minutes; subsequently, they were re-exposed to the opposite music (70-80 dB). A different group of women were exposed to the same music styles plus white noise auditory stimulation (90 dB). The sequence of the songs was randomized for each individual. We analyzed the following indices: triangular index, triangular interpolation of RR intervals and Poincaré plot (standard deviation of instantaneous beat-by-beat variability, standard deviation of the long-term RR interval, standard deviation of instantaneous beat-by-beat variability and standard deviation of the long-term RR interval ratio), low frequency, high frequency, low frequency/high frequency ratio, standard deviation of all the normal RR intervals, root-mean square of differences between the adjacent normal RR intervals and the percentage of adjacent RR intervals with a difference of duration greater than 50 ms. Heart rate variability was recorded at rest for 10 minutes. RESULTS: The triangular index and the standard deviation of the long-term RR interval indices were reduced during exposure to both music styles in the first group and tended to decrease in the second group whereas the white noise exposure decreased the high frequency index. We observed no changes regarding the triangular interpolation of RR intervals, standard deviation of instantaneous beat-by-beat variability and standard deviation of instantaneous beat-by-beat variability/standard deviation in the long-term RR interval ratio. CONCLUSION: We suggest that relaxant baroque and excitatory heavy metal music slightly decrease global heart rate variability because of the equivalent sound level. PMID:23917660

Space based observations: A state of the art solution for spatial monitoring tropical forested watershed productivity at regional scale in developing countries

NASA Astrophysics Data System (ADS)

Mahmud, M. R.

2014-02-01

This paper presents the simplified and operational approach of mapping the water yield in tropical watershed using space-based multi sensor remote sensing data. Two main critical hydrological rainfall variables namely rainfall and evapotranspiration are being estimated by satellite measurement and reinforce the famous Thornthwaite & Mather water balance model. The satellite rainfall and ET estimates were able to represent the actual value on the ground with accuracy under considerable conditions. The satellite derived water yield had good agreement and relation with actual streamflow. A high bias measurement may result due to; i) influence of satellite rainfall estimates during heavy storm, and ii) large uncertainties and standard deviation of MODIS temperature data product. The output of this study managed to improve the regional scale of hydrology assessment in Peninsular Malaysia.

Effect of glycosylation on an immunodominant region in the V1V2 variable domain of the HIV-1 envelope gp120 protein

DOE PAGES

Tian, Jianhui; Lopez, Cesar Augusto; Derdeyn, Cynthia A.; ...

2016-10-07

Heavy glycosylation of the envelope (Env) surface subunit, gp120, is a key adaptation of HIV-1; however, the precise effects of glycosylation on the folding, conformation and dynamics of this protein are poorly understood. Here we explore the patterns of HIV-1 Env gp120 glycosylation, and particularly the enrichment in glycosylation sites proximal to the disulfide linkages at the base of the surface-exposed variable domains. To dissect the influence of glycans on the conformation these regions, we focused on an antigenic peptide fragment from a disulfide bridge-bounded region spanning the V1 and V2 hyper-variable domains of HIV-1 gp120. We used replica exchangemore » molecular dynamics (MD) simulations to investigate how glycosylation influences its conformation and stability. Simulations were performed with and without N-linked glycosylation at two sites that are highly conserved across HIV-1 isolates (N156 and N160); both are contacts for recognition by V1V2-targeted broadly neutralizing antibodies against HIV-1. Glycosylation stabilized the pre-existing conformations of this peptide construct, reduced its propensity to adopt other secondary structures, and provided resistance against thermal unfolding. Simulations performed in the context of the Env trimer also indicated that glycosylation reduces flexibility of the V1V2 region, and provided insight into glycan-glycan interactions in this region. These stabilizing effects were influenced by a combination of factors, including the presence of a disulfide bond between the Cysteines at 131 and 157, which increased the formation of beta-strands. Together, these results provide a mechanism for conservation of disulfide linkage proximal glycosylation adjacent to the variable domains of gp120 and begin to explain how this could be exploited to enhance the immunogenicity of those regions. Furthermore, these studies suggest that glycopeptide immunogens can be designed to stabilize the most relevant Env conformations to focus the immune response on key neutralizing epitopes.« less

Effect of glycosylation on an immunodominant region in the V1V2 variable domain of the HIV-1 envelope gp120 protein

DOE Office of Scientific and Technical Information (OSTI.GOV)

Tian, Jianhui; Lopez, Cesar Augusto; Derdeyn, Cynthia A.

Heavy glycosylation of the envelope (Env) surface subunit, gp120, is a key adaptation of HIV-1; however, the precise effects of glycosylation on the folding, conformation and dynamics of this protein are poorly understood. Here we explore the patterns of HIV-1 Env gp120 glycosylation, and particularly the enrichment in glycosylation sites proximal to the disulfide linkages at the base of the surface-exposed variable domains. To dissect the influence of glycans on the conformation these regions, we focused on an antigenic peptide fragment from a disulfide bridge-bounded region spanning the V1 and V2 hyper-variable domains of HIV-1 gp120. We used replica exchangemore » molecular dynamics (MD) simulations to investigate how glycosylation influences its conformation and stability. Simulations were performed with and without N-linked glycosylation at two sites that are highly conserved across HIV-1 isolates (N156 and N160); both are contacts for recognition by V1V2-targeted broadly neutralizing antibodies against HIV-1. Glycosylation stabilized the pre-existing conformations of this peptide construct, reduced its propensity to adopt other secondary structures, and provided resistance against thermal unfolding. Simulations performed in the context of the Env trimer also indicated that glycosylation reduces flexibility of the V1V2 region, and provided insight into glycan-glycan interactions in this region. These stabilizing effects were influenced by a combination of factors, including the presence of a disulfide bond between the Cysteines at 131 and 157, which increased the formation of beta-strands. Together, these results provide a mechanism for conservation of disulfide linkage proximal glycosylation adjacent to the variable domains of gp120 and begin to explain how this could be exploited to enhance the immunogenicity of those regions. Furthermore, these studies suggest that glycopeptide immunogens can be designed to stabilize the most relevant Env conformations to focus the immune response on key neutralizing epitopes.« less

Evaporation as the transport mechanism of metals in arid regions.

PubMed

Lima, Ana T; Safar, Zeinab; Loch, J P Gustav

2014-09-01

Soils of arid regions are exposed to drought and drastic temperature oscillations throughout the year. Transport mechanisms in these soils are therefore very different from the ones in temperate regions, where rain dictates the fate of most elements in soils. Due to the low rainfall and high evaporation rates in arid regions, groundwater quality is not threatened and all soil contamination issues tend to be overlooked. But if soil contamination happens, where do contaminants go? This study tests the hypothesis of upward metal movement in soils when evaporation is the main transport mechanism. Laboratory evaporation tests were carried out with heavy metal spiked Saudi soil, using circulation of air as the driving force (Fig. 1). Main results show that loamy soil retains heavy metals quite well while evaporation drives heavy metals to the surface of a sandy soil. Evaporation transports heavy metals upward in sandy soils of arid regions, making them accumulate at the soil surface. Sand being the dominating type of soil in arid regions, soils can then be a potential source of contaminated aerosols and atmospheric pollution - a transboundary problem. Some other repercussions for this problem are foreseen, such as the public ingestion or inhalation of dust. Copyright © 2014 Elsevier Ltd. All rights reserved.

Using Multiple Metrics to Analyze Trends and Sensitivity of Climate Variability in New York City

NASA Astrophysics Data System (ADS)

Huang, J.; Towey, K.; Booth, J. F.; Baez, S. D.

2017-12-01

As the overall temperature of Earth continues to warm, changes in the Earth's climate are being observed through extreme weather events, such as heavy precipitation events and heat waves. This study examines the daily precipitation and temperature record of the greater New York City region during the 1979-2014 period. Daily station observations from three greater New York City airports: John F. Kennedy (JFK), LaGuardia (LGA) and Newark (EWR), are used in this study. Multiple statistical metrics are used in this study to analyze trends and variability in temperature and precipitation in the greater New York City region. The temperature climatology reveals a distinct seasonal cycle, while the precipitation climatology exhibits greater annual variability. Two types of thresholds are used to examine the variability of extreme events: extreme threshold and daily anomaly threshold. The extreme threshold indicates how the strength of the overall maximum is changing whereas the daily anomaly threshold indicates if the strength of the daily maximum is changing over time. We observed an increase in the frequency of anomalous daily precipitation events over the last 36 years, with the greatest frequency occurring in 2011. The most extreme precipitation events occur during the months of late summer through early fall, with approximately four expected extreme events occurring per year during the summer and fall. For temperature, the greatest frequency and variation in temperature anomalies occur during winter and spring. In addition, temperature variance is also analyzed to determine if there is greater day-to-day temperature variability today than in the past.

Pollution in the urban soils of Lianyungang, China, evaluated using a pollution index, mobility of heavy metals, and enzymatic activities.

PubMed

Li, Yu; Li, Hong-Guan; Liu, Fu-Cheng

2017-01-01

Soil samples from 16 urban sites in Lianyungang, China were collected and analyzed. A pollution index was used to assess the potential ecological risk of heavy metals and a sequential extraction procedure was used to evaluate the relative distribution of Cu, Zn, Pb, Cd, Cr, and As in exchangeable, carbonate, Fe/Mn oxide, organic/sulfide, and residual fractions. The mobility of heavy metals and urease (URE) activity, alkaline phosphatase (ALP) activity, and invertase (INV) activity of soils was determined. The results showed that the average concentrations of Cu, Zn, Pb, Cd, Cr, and As in Lianyungang soils were much higher than those in the coastal city soil background values of Jiangsu and China. Among the five studied regions (utilities, commercial, industrial, tourism, and roadside), the industrial region had the highest metal concentrations demonstrating that land use had a significant impact on the accumulation of heavy metals in Lianyungang soils. Compared to the other metals, Cd showed the highest ecological risk. According to chemical partitioning, Cu was associated with the organic/sulfides and Pb and Zn were mainly in the carbonate and the Fe/Mn oxide phase. The greatest amounts of Cd were found in exchangeable and carbonate fractions, while Cr and As were mainly in the residual fraction. Cd had the highest mobility of all metals, and the order of mobility (highest to lowest) of heavy metals in Lianyungang soils was Cd > Zn > Pb > Cu > As > Cr. Soil urease activity, alkaline phosphatase activity, and invertase activity varied considerably in different pollution degree sites. Soil enzyme activities had the lowest levels in roadside and industrial regions. Across all the soil data in the five regions, the total Cu, Zn, Pb, Cd, Cr, and As level was negatively correlated with urease activity, alkaline phosphatase activity, and invertase activity, but the relationship was not significant. In the industrial region, alkaline phosphatase activity had significant negative correlations with total Cu, Pb, Cr, Zn, Cd, and heavy metal fractions. This showed that alkaline phosphatase activity was sensitive to heavy metals in heavily contaminated regions, whereas urease and invertase were less affected. The combination of the various methods may offer a powerful analytical technique in the study of heavy metal pollution in street soil.

Comparing the Pearson and Spearman correlation coefficients across distributions and sample sizes: A tutorial using simulations and empirical data.

PubMed

de Winter, Joost C F; Gosling, Samuel D; Potter, Jeff

2016-09-01

The Pearson product–moment correlation coefficient ( r p ) and the Spearman rank correlation coefficient ( r s ) are widely used in psychological research. We compare r p and r s on 3 criteria: variability, bias with respect to the population value, and robustness to an outlier. Using simulations across low (N = 5) to high (N = 1,000) sample sizes we show that, for normally distributed variables, r p and r s have similar expected values but r s is more variable, especially when the correlation is strong. However, when the variables have high kurtosis, r p is more variable than r s . Next, we conducted a sampling study of a psychometric dataset featuring symmetrically distributed data with light tails, and of 2 Likert-type survey datasets, 1 with light-tailed and the other with heavy-tailed distributions. Consistent with the simulations, r p had lower variability than r s in the psychometric dataset. In the survey datasets with heavy-tailed variables in particular, r s had lower variability than r p , and often corresponded more accurately to the population Pearson correlation coefficient ( R p ) than r p did. The simulations and the sampling studies showed that variability in terms of standard deviations can be reduced by about 20% by choosing r s instead of r p . In comparison, increasing the sample size by a factor of 2 results in a 41% reduction of the standard deviations of r s and r p . In conclusion, r p is suitable for light-tailed distributions, whereas r s is preferable when variables feature heavy-tailed distributions or when outliers are present, as is often the case in psychological research. PsycINFO Database Record (c) 2016 APA, all rights reserved

Heavy metal accumulation in leaves and beans of cacao (Theobroma cacao L.) in major cacao growing regions in Peru.

PubMed

Arévalo-Gardini, Enrique; Arévalo-Hernández, Cesar O; Baligar, Virupax C; He, Zhenli L

2017-12-15

Peru is one of the leading exporters of organic cacao beans in the world. However, the accumulation of heavy metals in cacao beans represents a problem for cocoa bean export and chocolate quality. The aim of this study was to investigate the distribution and accumulation of heavy metals in cacao leaves and cocoa beans in three major cacao growing regions of Peru. The study was conducted in cacao plantations of 10 to 15years old in three regions of Peru: North (Regions of Tumbes, Piura, Cajamarca, and Amazonas); Center (Regions of Huánuco and San Martin) and South (Junin and Cuzco). Samples of leaf and cacao beans were collected from 70 cacao plantations, and the nature of cacao clone or genotype sampled was recorded. The concentrations of heavy metals such as Cd, Cr, Cu, Fe, Mn, Ni, Pb and Zn in leaves and beans were determined using atomic absorption spectrophotometer. Overall, concentrations of heavy metals were below the critical limits; however, the presence of high levels of Cd in cacao grown in Amazonas, Piura, and Tumbes regions is of primary concern. Plantations of cacao with different cacao clones show differences in Cd accumulation both in leaves and cocoa beans. Therefore, it is promising to screen low Cd accumulator cacao genotypes for safe production of cacao on lightly to moderately Cd contaminated soils. Also, synergism between Zn and Cd present both in plant and soil suggests that Zn has a direct effect on Cd accumulation in cacao. Copyright © 2017 Elsevier B.V. All rights reserved.

Modular Construction of Large Non-Immune Human Antibody Phage-Display Libraries from Variable Heavy and Light Chain Gene Cassettes.

PubMed

Lee, Nam-Kyung; Bidlingmaier, Scott; Su, Yang; Liu, Bin

2018-01-01

Monoclonal antibodies and antibody-derived therapeutics have emerged as a rapidly growing class of biological drugs for the treatment of cancer, autoimmunity, infection, and neurological diseases. To support the development of human antibodies, various display techniques based on antibody gene repertoires have been constructed over the last two decades. In particular, scFv-antibody phage display has been extensively utilized to select lead antibodies against a variety of target antigens. To construct a scFv phage display that enables efficient antibody discovery, and optimization, it is desirable to develop a system that allows modular assembly of highly diverse variable heavy chain and light chain (Vκ and Vλ) repertoires. Here, we describe modular construction of large non-immune human antibody phage-display libraries built on variable gene cassettes from heavy chain and light chain repertoires (Vκ- and Vλ-light can be made into independent cassettes). We describe utility of such libraries in antibody discovery and optimization through chain shuffling.

Influences of Appalachian orography on heavy rainfall and rainfall variability associated with the passage of hurricane Isabel by ensemble simulations

NASA Astrophysics Data System (ADS)

Oldaker, Guy; Liu, Liping; Lin, Yuh-Lang

2017-12-01

This study focuses on the heavy rainfall event associated with hurricane Isabel's (2003) passage over the Appalachian mountains of the eastern United States. Specifically, an ensemble consisting of two groups of simulations using the Weather Research and Forecasting model (WRF), with and without topography, is performed to investigate the orographic influences on heavy rainfall and rainfall variability. In general, the simulated ensemble mean with full terrain is able to reproduce the key observed 24-h rainfall amount and distribution, while the flat-terrain mean lacks in this respect. In fact, 30-h rainfall amounts are reduced by 75% with the removal of topography. Rainfall variability is also significantly increased with the presence of orography. Further analysis shows that the complex interaction between the hurricane and terrain along with contributions from varied microphysics, cumulus parametrization, and planetary boundary layer schemes have a pronounced effect on rainfall and rainfall variability. This study follows closely with a previous study, but for a different TC case of Isabel (2003). It is an important sensitivity test for a different TC in a very different environment. This study reveals that the rainfall variability behaves similarly, even with different settings of the environment.

Uwagi o badaniu minerałów ciężkich w lessach Polski

NASA Astrophysics Data System (ADS)

Racinowski, Roman

2010-01-01

Research on loess' heavy minerals had been carried out in Poland since the 30's of the 20th century. The research was intensified in the 2nd half of the 20th century as helpful in answer to the problem relating to loess' genesis and age. Since the size of heavy minerals in loess is grouped in the range of 20-100 μm, therefore their determination was proceeded on grains fraction 0.25-0.01 mm or 0.06-0.01 mm. These days determination is carried out on the material with diameter 0.10-0.06 mm. Heavy minerals dominating in the Polish loess are: garnets, zircon, rutile, the supporting ones are: amphiboles, biotite, epidotes, and tourmalines. Qualitatively similar heavy minerals appear in each loess fraction. However, their percentage fractions are variable in neighbouring profiles and cross-sections. Mineral content allows to draw preliminary conclusions on the source material of loess silts and on transport characteristics, as well as on the course of deposition process. In the case of the Polish loess stored material originates from blown away pre-Quaternary rock-mantle (rich in zircon, rutile, and partly in garnets), Pleistocene lacustrine-flooding muds and glacial tills (rich in amphibole, biotite, epidotes, and garnets). Comparing the spectrum of heavy minerals in the Polish loess one can state that in particular regions neighbouring profiles do not show significant similarity with regard to quantitative content of heavy minerals. Therefore, it is not possible in a universal manner to apply those results to unique lithostratigraphic inference. On the basis of research made on contemporarily developed loess soil levels, as well as appearing there levels of fossil soils, it is not possible to differentiate without any doubt the content of minerals with various resistance to destruction as a result of pedological processes.

Value of the GENS Forecast Ensemble as a Tool for Adaptation of Economic Activity to Climate Change

NASA Astrophysics Data System (ADS)

Hancock, L. O.; Alpert, J. C.; Kordzakhia, M.

2009-12-01

In an atmosphere of uncertainty as to the magnitude and direction of climate change in upcoming decades, one adaptation mechanism has emerged with consensus support: the upgrade and dissemination of spatially-resolved, accurate forecasts tailored to the needs of users. Forecasting can facilitate the changeover from dependence on climatology that is increasingly out of date. The best forecasters are local, but local forecasters face great constraints in some countries. Indeed, it is no coincidence that some areas subject to great weather variability and strong processes of climate change are economically vulnerable: mountainous regions, for example, where heavy and erratic flooding can destroy the value built up by households over years. It follows that those best placed to benefit from forecasting upgrades may not be those who have invested in the greatest capacity to date. More-flexible use of the global forecasts may contribute to adaptation. NOAA anticipated several years ago that their forecasts could be used in new ways in the future, and accordingly prepared sockets for easy access to their archives. These could be used to empower various national and regional capacities. Verification to identify practical lead times for the economically important variables is a needed first step. This presentation presents the verification that our team has undertaken, a pilot effort in which we considered variables of interest to economic actors in several lower income countries, cf. shepherds in a remote area of Central Asia, and verified the ensemble forecasts of those variables.

Relationship between plant biodiversity and heavy metal bioavailability in grasslands overlying an abandoned mine.

PubMed

Hernández, A J; Pastor, J

2008-04-01

Abandoned metal mines in the Sierra de Guadarrama, Madrid, Spain, are often located in areas of high ecological value. This is true of an abandoned barium mine situated in the heart of a bird sanctuary. Today the area sustains grasslands, interspersed with oakwood formations of Quercus ilex and heywood scrub (Retama sphaerocarpa L.), used by cattle, sheep and wild animals. Our study was designed to establish a relationship between the plant biodiversity of these grasslands and the bioavailability of heavy metals in the topsoil layer of this abandoned mine. We conducted soil chemical analyses and performed a greenhouse evaluation of the effects of different soil heavy metal concentrations on biodiversity. The greenhouse bioassays were run for 6 months using soil samples obtained from the mine polluted with heavy metals (Cu, Zn, Pb and Cd) and from a control pasture. Soil heavy metal and Na concentrations, along with the pH, had intense negative effects on plant biodiversity, as determined through changes in the Shannon index and species richness. Numbers of grasses, legumes, and composites were reduced, whilst other species (including ruderals) were affected to a lesser extent. Zinc had the greatest effect on biodiversity, followed by Cd and Cu. When we compared the sensitivity of the biodiversity indicators to the different metal content variables, pseudototal metal concentrations determined by X-ray fluorescence (XRF) were the most sensitive, followed by available and soluble metal contents. Worse correlations between biodiversity variables and metal variables were shown by pseudototal contents obtained by plasma emission spectroscopy (ICP-OES). Our results highlight the importance of using as many different indicators as possible to reliably assess the response shown by plants to heavy metal soil pollution.

Structural classification of CDR-H3 revisited: a lesson in antibody modeling.

PubMed

Kuroda, Daisuke; Shirai, Hiroki; Kobori, Masato; Nakamura, Haruki

2008-11-15

Among the six complementarity-determining regions (CDRs) in the variable domains of an antibody, the third CDR of the heavy chain (CDR-H3), which lies in the center of the antigen-binding site, plays a particularly important role in antigen recognition. CDR-H3 shows significant variability in its length, sequence, and structure. Although difficult, model building of this segment is the most critical step in antibody modeling. Since our first proposal of the "H3-rules," which classify CDR-H3 structure based on amino acid sequence, the number of experimentally determined antibody structures has increased. Here, we revise these H3-rules and propose an improved classification scheme for CDR-H3 structure modeling. In addition, we determine the common features of CDR-H3 in antibody drugs as well as discuss the concept of "antibody druggability," which can be applied as an indicator of antibody evaluation during drug discovery.

Adsorption and redox reactions of heavy metals on synthesized Mn oxide minerals.

PubMed

Feng, Xiong Han; Zhai, Li Mei; Tan, Wen Feng; Liu, Fan; He, Ji Zheng

2007-05-01

Several Mn oxide minerals commonly occurring in soils were synthesized by modified or optimized methods. The morphologies, structures, compositions and surface properties of the synthesized Mn oxide minerals were characterized. Adsorption and redox reactions of heavy metals on these minerals in relation to the mineral structures and surface properties were also investigated. The synthesized birnessite, todorokite, cryptomelane, and hausmannite were single-phased minerals and had the typical morphologies from analyses of XRD and TEM/ED. The PZCs of the synthesized birnessite, todorokite and cryptomelane were 1.75, 3.50 and 2.10, respectively. The magnitude order of their surface variable negative charge was: birnessite> or =cryptomelane>todorokite. The hausmannite had a much higher PZC than others with the least surface variable negative charge. Birnessite exhibited the largest adsorption capacity on heavy metals Pb(2+), Cu(2+), Co(2+), Cd(2+) and Zn(2+), while hausmannite the smallest one. Birnessite, cryptomelane and todorokite showed the greatest adsorption capacity on Pb(2+) among the tested heavy metals. Hydration tendency (pK(1)) of the heavy metals and the surface variable charge of the Mn minerals had significant impacts on the adsorption. The ability in Cr(III) oxidation and concomitant release of Mn(2+) varied greatly depending on the structure, composition, surface properties and crystallinity of the minerals. The maximum amounts of Cr(III) oxidized by the Mn oxide minerals in order were (mmol/kg): birnessite (1330.0)>cryptomelane (422.6)>todorokite (59.7)>hausmannite (36.6).

Spatial Evaluation of Heavy Metals Concentrations in the Surface Sediment of Taihu Lake

PubMed Central

Niu, Yong; Jiao, Wei; Yu, Hui; Niu, Yuan; Pang, Yong; Xu, Xiangyang; Guo, Xiaochun

2015-01-01

With regard to the size of China’s freshwater lakes, Taihu Lake ranks third and it plays an important role in the supply of drinking water, flood prevention, farming and navigation, as well as in the travelling industry. The problem of environmental pollution has attracted widespread attention in recent years. In order to understand the levels, distribution and sources of heavy metals in sediments of Taihu Lake, random selection was carried out to obtain 59 samples of surface sediment from the entire lake and study the concentrations of Pb, Cd, Cu, Zn, Cr and Ni. Toxic units were also calculated to normalize the toxicities caused by various heavy metals. As a result, Cd and Cu in sediment were considered lower than the effect range low (ERL) at all regions where samples were gathered, while Pb and Ni were categorized into ERL-effect range median (ERM) at over 22% of the regions where samples were obtained. Nevertheless, all average concentrations of the samples were below the level of potential effect. According to the findings of this research, significant spatial heterogeneity existed in the above heavy metals. In conclusion, the distribution areas of heavy metals with higher concentrations were mainly the north bays, namely Zhushan Bay, Meiliang Bay as well as Gonghu Bay. The distribution areas of Cu, Zn, Cr and Ni with higher concentration also included the lake’s central region, whereas the uniform distribution areas of those with lower concentrations were the lake’s southeast region. In addition, it was most probable that the spatial distribution of heavy metals was determined by river inputs, whereas atmospheric precipitation caused by urban and traffic contamination also exerted considerable effects on the higher concentrations of Pb and Cd. Through evaluating the total amount of toxic units (ΣTU), it was found that higher toxicity existed primarily in the north bays and central region of the lake. If the heavy metals were sorted by the reduction of mean heavy metal toxic units in Taihu Lake in descending order, it would be Pb, Cr, Ni, Cd, Zn and Cu. Generally speaking, these result of analyses are conducive to alleviating the contamination of heavy metals in Taihu Lake. PMID:26633432

Inputs of heavy metals due to agrochemical use in tobacco fields in Brazil's Southern Region.

PubMed

Zoffoli, Hugo José Oliveira; do Amaral-Sobrinho, Nelson Moura Brasil; Zonta, Everaldo; Luisi, Marcus Vinícius; Marcon, Gracioso; Tolón-Becerra, Alfredo

2013-03-01

Only a few studies have assessed the joint incorporation of heavy metals into agricultural systems based on the range of agrochemicals used on a specific agricultural crop. This study was conducted to assess the heavy metals input through application of the main agrochemicals used in Brazilian tobacco fields. A total of 56 samples of different batches of 5 fertilizers, 3 substrates, 8 insecticides, 3 fungicides, 2 herbicides, and 1 growth regulator commonly used in the cultivation of tobacco in Brazil's Southern Region were collected from 3 warehouses located in the States of Rio Grande do Sul, Santa Catarina, and Paraná. The total As, Cd, Co, Cr, Cu, Hg, Fe, Mn, Ni, Pb, and Zn content of the samples was then determined and compared with the regulations of different countries and information found in the available literature. The fertilizers were identified as the primary source of heavy metals among the agrochemicals used. Application of pesticides directly to the shoots of tobacco plants contributed very little to the supply of heavy metals. The agrochemicals used in Brazilian tobacco fields provide lower inputs of the main heavy metals that are nonessential for plants than those registered in the international literature for the majority of crop fields in different regions of the world.

Recombinant dissection of myosin heavy chain of Toxocara canis shows strong clustering of antigenic regions.

PubMed

Obwaller, A; Duchêne, M; Bruhn, H; Steipe, B; Tripp, C; Kraft, D; Wiedermann, G; Auer, H; Aspöck, H

2001-05-01

Myosins from nematode parasites elicit strong humoral and cellular immune responses and have been investigated as vaccine candidates. In this study we cloned and sequenced a cDNA coding for myosin heavy chain from Toxocara canis, a nematode parasite of canids which may also infect humans and cause various unspecific symptoms. To determine the major antigenic regions the myosin heavy chain was systematically dissected into ten overlapping recombinant fusion polypeptides which were purified by metal chelate chromatography. Single fragments were then tested for their IgG reactivity in sera from toxocarosis patients and healthy probands. Two regions, one region at the mid to carboxy-terminal end of the head domain and one region in the rod domain, were identified as major antigens, which in combination were positive with 86% of the sera. The other domains were less reactive. This shows that the patients' IgG reactivity was not directed evenly against all parts of the molecule, but was rather clustered in few regions.

Extreme rainfall events in the Sinai Peninsula

NASA Astrophysics Data System (ADS)

Baldi, Marina; Amin, Doaa; Zayed, Islam Sabry Al; Dalu, Giovanni A.

2017-04-01

In the present paper Authors discuss results from the first phase of a project carried out in the framework of the Agreement on Scientific Cooperation between the Academy of Scientific Research and Technology of Egypt (ASRT) and the National Research Council of Italy (CNR). As in ancient times, today heavy rainfall, often resulting in flash floods, affects Egypt, not only in the coastal areas along the Mediterranean Sea and the Red Sea, but also in arid and semi-arid areas such as Upper Egypt (Luxor, Aswan, and Assiut) and in the Sinai Peninsula, and their distribution has been modified due to the current climate variability. These episodes, although rare, can be catastrophic in regions characterized by a very low annual total amount of precipitation, with large impacts on lives, infrastructures, properties and last but not least, to the great cultural heritage of the Country. Flash flood episodes in the Sinai Peninsula result from heavy, sudden, and short duration rainfall, influenced also by the peculiar orography and soil conditions of the Region, and represent a risk for the population, infrastructures, properties, and sectors like industry and agriculture. On the other hand, flash floods in Sinai and southern/southeastern Egypt represent a potential source for non-conventional fresh water resources. In particular flash flood water, which usually drains into the Gulf of Suez and the Gulf of Aqaba, can fulfill a non-negligible amount of water demand, and/or recharge shallow groundwater aquifers, and the harvested rainfall can represent a source of water for rain-fed agriculture in the region. A general overview of the Sinai current climate is presented, including a climatology of extreme rainfalls events in the last decades. In addition, few selected heavy rainfall episodes which occurred in the Sinai in recent years have been analyzed and their characteristics and links to larger scale circulation will be discussed. Results of the study provide a better understanding of the climate variability and change over Sinai, including a description of extreme rainfalls events in the recent past, the driving mechanisms, generation and evolution of these short-lived and patchy storms and their future evolution under future climate change scenarios, also offering the background for the next step of the project. In fact, the final goal of the ASRT-CNR joint project is on one side to improve the knowledge about the impact of future climate change on the sequence and severity of flash floods in Sinai, on the other side to give some indications for an improvement of the forecast systems over the region at different temporal scale from weekly to sub-seasonal and seasonal. The final results are also intended to provide some basic information about future water harvesting possibilities, and to help decision makers to decide between future protection works and/or water harvesting structures in the Region.

A novel heavy metal ATPase peptide from Prosopis juliflora is involved in metal uptake in yeast and tobacco.

PubMed

Keeran, Nisha S; Ganesan, G; Parida, Ajay K

2017-04-01

Heavy metal pollution of agricultural soils is one of the most severe ecological problems in the world. Prosopis juliflora, a phreatophytic tree species, grows well in heavy metal laden industrial sites and is known to accumulate heavy metals. Heavy Metal ATPases (HMAs) are ATP driven heavy metal pumps that translocate heavy metals across biological membranes thus helping the plant in heavy metal tolerance and phytoremediation. In the present study we have isolated and characterized a novel 28.9 kDa heavy metal ATPase peptide (PjHMT) from P. juliflora which shows high similarity to the C-terminal region of P 1B ATPase HMA1. It also shows the absence of the invariant signature sequence DKTGT, and the metal binding CPX motif but the presence of conserved regions like MVGEGINDAPAL (ATP binding consensus sequence), HEGGTLLVCLNS (metal binding domain) and MLTGD, GEGIND and HEGG motifs which play important roles in metal transport or ATP binding. PjHMT, was found to be upregulated under cadmium and zinc stress. Heterologous expression of PjHMT in yeast showed a higher accumulation and tolerance of heavy metals in yeast. Further, transgenic tobacco plants constitutively expressing PjHMT also showed increased accumulation and tolerance to cadmium. Thus, this study suggests that the transport peptide from P. juliflora may have an important role in Cd uptake and thus in phytoremediation.

The Lambert Way to Gaussianize Heavy-Tailed Data with the Inverse of Tukey's h Transformation as a Special Case

PubMed Central

Goerg, Georg M.

2015-01-01

I present a parametric, bijective transformation to generate heavy tail versions of arbitrary random variables. The tail behavior of this heavy tail Lambert  W × F X random variable depends on a tail parameter δ ≥ 0: for δ = 0, Y ≡ X, for δ > 0 Y has heavier tails than X. For X being Gaussian it reduces to Tukey's h distribution. The Lambert W function provides an explicit inverse transformation, which can thus remove heavy tails from observed data. It also provides closed-form expressions for the cumulative distribution (cdf) and probability density function (pdf). As a special case, these yield analytic expression for Tukey's h pdf and cdf. Parameters can be estimated by maximum likelihood and applications to S&P 500 log-returns demonstrate the usefulness of the presented methodology. The R package LambertW implements most of the introduced methodology and is publicly available on CRAN. PMID:26380372

Rapid Adsorption of Heavy Metals by Fe3O4/Talc Nanocomposite and Optimization Study Using Response Surface Methodology

PubMed Central

Kalantari, Katayoon; Ahmad, Mansor B.; Masoumi, Hamid Reza Fard; Shameli, Kamyar; Basri, Mahiran; Khandanlou, Roshanak

2014-01-01

Fe3O4/talc nanocomposite was used for removal of Cu(II), Ni(II), and Pb(II) ions from aqueous solutions. Experiments were designed by response surface methodology (RSM) and a quadratic model was used to predict the variables. The adsorption parameters such as adsorbent dosage, removal time, and initial ion concentration were used as the independent variables and their effects on heavy metal ion removal were investigated. Analysis of variance was incorporated to judge the adequacy of the models. Optimal conditions with initial heavy metal ion concentration of 100, 92 and 270 mg/L, 120 s of removal time and 0.12 g of adsorbent amount resulted in 72.15%, 50.23%, and 91.35% removal efficiency for Cu(II), Ni(II), and Pb(II), respectively. The predictions of the model were in good agreement with experimental results and the Fe3O4/talc nanocomposite was successfully used to remove heavy metals from aqueous solutions. PMID:25050784

Monitoring of heavy metal concentrations in home outdoor air using moss bags.

PubMed

Rivera, Marcela; Zechmeister, Harald; Medina-Ramón, Mercedes; Basagaña, Xavier; Foraster, Maria; Bouso, Laura; Moreno, Teresa; Solanas, Pascual; Ramos, Rafael; Köllensperger, Gunda; Deltell, Alexandre; Vizcaya, David; Künzli, Nino

2011-04-01

One monitoring station is insufficient to characterize the high spatial variation of traffic-related heavy metals within cities. We tested moss bags (Hylocomium splendens), deployed in a dense network, for the monitoring of metals in outdoor air and characterized metals' long-term spatial distribution and its determinants in Girona, Spain. Mosses were exposed outside 23 homes for two months; NO₂ was monitored for comparison. Metals were not highly correlated with NO₂ and showed higher spatial variation than NO₂. Regression models explained 61-85% of Cu, Cr, Mo, Pb, Sb, Sn, and Zn and 72% of NO₂ variability. Metals were strongly associated with the number of bus lines in the nearest street. Heavy metals are an alternative traffic-marker to NO₂ given their toxicological relevance, stronger association with local traffic and higher spatial variability. Monitoring heavy metals with mosses is appealing, particularly for long-term exposure assessment, as mosses can remain on site many months without maintenance. Copyright © 2010 Elsevier Ltd. All rights reserved.

Rapid adsorption of heavy metals by Fe3O4/talc nanocomposite and optimization study using response surface methodology.

PubMed

Kalantari, Katayoon; Ahmad, Mansor B; Masoumi, Hamid Reza Fard; Shameli, Kamyar; Basri, Mahiran; Khandanlou, Roshanak

2014-07-21

Fe3O4/talc nanocomposite was used for removal of Cu(II), Ni(II), and Pb(II) ions from aqueous solutions. Experiments were designed by response surface methodology (RSM) and a quadratic model was used to predict the variables. The adsorption parameters such as adsorbent dosage, removal time, and initial ion concentration were used as the independent variables and their effects on heavy metal ion removal were investigated. Analysis of variance was incorporated to judge the adequacy of the models. Optimal conditions with initial heavy metal ion concentration of 100, 92 and 270 mg/L, 120 s of removal time and 0.12 g of adsorbent amount resulted in 72.15%, 50.23%, and 91.35% removal efficiency for Cu(II), Ni(II), and Pb(II), respectively. The predictions of the model were in good agreement with experimental results and the Fe3O4/talc nanocomposite was successfully used to remove heavy metals from aqueous solutions.

Impact of large-scale circulation changes in the North Atlantic sector on the current and future Mediterranean winter hydroclimate

NASA Astrophysics Data System (ADS)

Barcikowska, Monika J.; Kapnick, Sarah B.; Feser, Frauke

2018-03-01

The Mediterranean region, located in the transition zone between the dry subtropical and wet European mid-latitude climate, is very sensitive to changes in the global mean climate state. Projecting future changes of the Mediterranean hydroclimate under global warming therefore requires dynamic climate models to reproduce the main mechanisms controlling regional hydroclimate with sufficiently high resolution to realistically simulate climate extremes. To assess future winter precipitation changes in the Mediterranean region we use the Geophysical Fluid Dynamics Laboratory high-resolution general circulation model for control simulations with pre-industrial greenhouse gas and aerosol concentrations which are compared to future scenario simulations. Here we show that the coupled model is able to reliably simulate the large-scale winter circulation, including the North Atlantic Oscillation and Eastern Atlantic patterns of variability, and its associated impacts on the mean Mediterranean hydroclimate. The model also realistically reproduces the regional features of daily heavy rainfall, which are absent in lower-resolution simulations. A five-member future projection ensemble, which assumes comparatively high greenhouse gas emissions (RCP8.5) until 2100, indicates a strong winter decline in Mediterranean precipitation for the coming decades. Consistent with dynamical and thermodynamical consequences of a warming atmosphere, derived changes feature a distinct bipolar behavior, i.e. wetting in the north—and drying in the south. Changes are most pronounced over the northwest African coast, where the projected winter precipitation decline reaches 40% of present values. Despite a decrease in mean precipitation, heavy rainfall indices show drastic increases across most of the Mediterranean, except the North African coast, which is under the strong influence of the cold Canary Current.

Exploring a Variable-Resolution Approach for Simulating Regional Climate in the Rocky Mountain Region Using the VR-CESM

NASA Astrophysics Data System (ADS)

Wu, Chenglai; Liu, Xiaohong; Lin, Zhaohui; Rhoades, Alan M.; Ullrich, Paul A.; Zarzycki, Colin M.; Lu, Zheng; Rahimi-Esfarjani, Stefan R.

2017-10-01

The reliability of climate simulations and projections, particularly in the regions with complex terrains, is greatly limited by the model resolution. In this study we evaluate the variable-resolution Community Earth System Model (VR-CESM) with a high-resolution (0.125°) refinement over the Rocky Mountain region. The VR-CESM results are compared with observations, as well as CESM simulation at a quasi-uniform 1° resolution (UNIF) and Canadian Regional Climate Model version 5 (CRCM5) simulation at a 0.11° resolution. We find that VR-CESM is effective at capturing the observed spatial patterns of temperature, precipitation, and snowpack in the Rocky Mountains with the performance comparable to CRCM5, while UNIF is unable to do so. VR-CESM and CRCM5 simulate better the seasonal variations of precipitation than UNIF, although VR-CESM still overestimates winter precipitation whereas CRCM5 and UNIF underestimate it. All simulations distribute more winter precipitation along the windward (west) flanks of mountain ridges with the greatest overestimation in VR-CESM. VR-CESM simulates much greater snow water equivalent peaks than CRCM5 and UNIF, although the peaks are still 10-40% less than observations. Moreover, the frequency of heavy precipitation events (daily precipitation ≥ 25 mm) in VR-CESM and CRCM5 is comparable to observations, whereas the same events in UNIF are an order of magnitude less frequent. In addition, VR-CESM captures the observed occurrence frequency and seasonal variation of rain-on-snow days and performs better than UNIF and CRCM5. These results demonstrate the VR-CESM's capability in regional climate modeling over the mountainous regions and its promising applications for climate change studies.

[Pollution distribution and potential ecological risk assessment of heavy metals in sediments from the different eastern dredging regions of Lake Taihu].

PubMed

Mao, Zhi-Gang; Gu, Xiao-Hong; Lu, Xiao-Ming; Zeng, Qing-Fei; Gu, Xian-Kun; Li, Xu-Guang

2014-01-01

In order to investigate the distribution characteristics of nutrients and heavy metals in sediments from different eastern dredging regions of Lake Taihu, the surface and core sediment samples at 5 sites (in East Taihu Lake and Xukou Bay) were collected in 2012. Contents of nutrients (TOC, TN and TP) and heavy metals (As, Cd, Cr, Cu, Hg, Ni, Pb and Zn) in the sediments were measured and the pollution degrees of heavy metals were evaluated with the potential ecological risk method. The results showed that the heavy metal contents in Xukou Bay were generally higher than those in East Taihu Lake, whereas the nutrients contents showed the reverse trend. There were significant differences between the phytoplankton-dominated and culture lake regions. The concentrations of both nutrients and heavy metals decreased with increasing profile depth. Moreover, the contents of nutrients and heavy metals in the sediments of all dredged areas were lower than those in the un-dredged areas, suggesting that dredging may be a useful approach for decreasing nutrients and heavy metals loading in sediments, but its effectiveness decreased with time. Significant positive correlations were found among different heavy metals and nutrients, indicating that they were from the same pollution source. The Hakanson potential ecological risk index was applied for assessing the status of sediment heavy metal enrichment and the result indicated that sediment dredging could reduce the extent of potential ecological risk. The risk index in different sites followed the order: X1 > D1 > D3 > X2 > D2, while the risk index in site X1 of Xukou Bay was higher than that in site D1 of East Taihu Lake. And the comprehensive ecological risk grades in sites X1 and D1 were in the moderate range, while the sites D2, D3 and X2 were low.

A Systematic Review of Heavy Metals of Anthropogenic Origin in Environmental Media and Biota in the Context of Gold Mining in Ghana

PubMed Central

Armah, Frederick Ato; Quansah, Reginald; Luginaah, Isaac

2014-01-01

Heavy metal accumulation in the food chain is an issue of global concern because it eventually leads to toxic effects on humans through the water we drink, contaminated soils, crops, and animals. Reports of toxicant levels in environmental media (air, water, and soil) and biota in Ghana were sought in SCOPUS, PubMed, MEDLINE, and EMBASE. Of 1004 bibliographic records identified, 54 studies were included in evidence synthesis. A disproportionately large number of papers (about 80%) focused exclusively on environmental media. Papers focusing on biomonitoring and human health were relatively few. Studies reported a high degree of spatial variability for the concentrations of 8 metals in groundwater. Generally, heavy metal concentrations in soil reported by the studies reviewed were higher than metal concentrations in riverine sediments. Urine and hair were the most common biological markers of heavy metal exposure used by the studies reviewed unlike nails, which were sparingly used. By and large, published results on the levels of heavy metals in goldmine and non-mine workers yielded contradictory results. Mostly, concentrations of heavy metals reported by the studies reviewed for nails were higher than for hair. A high degree of variability in the heavy metal concentrations in human subjects in the studies reviewed is likely due to heterogeneity in physiological states, excretion profiles, and body burdens of individuals. These, in turn, may be a product of genetic polymorphisms influencing detoxification efficiency. PMID:27351015

Kinetics of Electrons from Plasma Discharge in a Latent Track Region Induced by Swift Heavy ION Irradiation

NASA Astrophysics Data System (ADS)

Minárik, Stanislav

2015-08-01

While passing swift heavy ion through a material structure, it produces a region of radiation affected material which is known as a "latent track". Scattering motions of electrons interacting with a swift heavy ion are dominant in the latent track region. These phenomena include the electron impurity and phonon scattering processes modified by the interaction with the ion projectile as well as the Coulomb scattering between two electrons. In this paper, we provide detailed derivation of a 3D Boltzmann scattering equation for the description of the relative scattering motion of such electrons. Phase-space distribution function for this non-equilibrioum system of scattering electrons can be found by the solution of mentioned equation.

Heavy Metals in Soil&Plant System Under Conditions of the South of Tyumen Region

NASA Astrophysics Data System (ADS)

Oznobihina, A. O.; Gayevaya, E. V.

2017-11-01

The article considers the problems of pollution with heavy metals (zinc, copper, cadmium and lead) of topsoil and plant products. The article contains the results analysis for laboratory trials of the researched components of the natural environment in the territory of the reference plots of the south of the Tyumen region. The authors assessed soil pollution and the samples of natural as well as perennial grasses, rape, oats, wheat, barley with heavy metals. A correlation between the content of zinc, copper, cadmium, lead in the soil and plants growing in it was determined. The article identifies the regions where the agrotechnical procedures directed to the decrease of toxicants’ negative influence on the life form should be considered.

The immunoglobulin heavy chain locus of the duck. Genomic organization and expression of D, J, and C region genes.

PubMed

Lundqvist, M L; Middleton, D L; Hazard, S; Warr, G W

2001-12-14

The region of the duck IgH locus extending from upstream of the proximal diversity (D) segment to downstream of the constant gene cluster has been cloned and mapped. A sequence contig of 48,796 base pairs established that the organization of the genes is D-J(H)-mu-alpha-upsilon. No evidence for a functional homologue (or remnant) of a delta gene was found. The alpha gene is in inverted transcriptional orientation; class switch to IgA expression thus requires inversion of the approximately 27-kilobase pair region that includes both mu and alpha genes. The secreted forms of duck alpha and mu are each encoded by 4 constant region exons, and the hydrophobic C-terminal regions of the membrane receptor forms of alpha and mu are encoded by one and two transmembrane exons, respectively. Putative switch (S) regions were identified for duck mu and upsilon by comparison with chicken Smu and Supsilon sequences and for duck alpha by comparison with mouse Salpha. The duck IgH locus is rich in complex variable number tandem repeats, which occupy approximately 60% of the sequenced region, and occur at a much higher frequency in the IgH locus than in other sequenced regions of the duck genome.

The long view: Causes of climate change over the instrumental period

NASA Astrophysics Data System (ADS)

Hegerl, G. C.; Schurer, A. P.; Polson, D.; Iles, C. E.; Bronnimann, S.

2016-12-01

The period of instrumentally recorded data has seen remarkable changes in climate, with periods of rapid warming, and periods of stagnation or cooling. A recent analysis of the observed temperature change from the instrumental record confirms that most of the warming recorded since the middle of the 20rst century has been caused by human influences, but shows large uncertainty in separating greenhouse gas from aerosol response if accounting for model uncertainty. The contribution by natural forcing and internal variability to the recent warming is estimated to be small, but becomes more important when analysing climate change over earlier or shorter time periods. For example, the enigmatic early 20th century warming was a period of strong climate anomalies, including the US dustbowl drought and exceptional heat waves, and pronounced Arctic warming. Attribution results suggests that about half of the global warming 1901-1950 was forced by greenhouse gases increases, with an anomalously strong contribution by climate variability, and contributions by natural forcing. Long term variations in circulation are important for some regional climate anomalies. Precipitation is important for impacts of climate change and precipitation changes are uncertain in models. Analysis of the instrumental record suggests a human influence on mean and heavy precipitation, and supports climate model estimates of the spatial pattern of precipitation sensitivity to warming. Broadly, and particularly over ocean, wet regions are getting wetter and dry regions are getting drier. In conclusion, the historical record provides evidence for a strong response to external forcings, supports climate models, and raises questions about multi-decadal variability.

Freshwater exchanges and surface salinity in the Colombian basin, Caribbean Sea.

PubMed

Beier, Emilio; Bernal, Gladys; Ruiz-Ochoa, Mauricio; Barton, Eric Desmond

2017-01-01

Despite the heavy regional rainfall and considerable discharge of many rivers into the Colombian Basin, there have been few detailed studies about the dilution of Caribbean Surface Water and the variability of salinity in the southwestern Caribbean. An analysis of the precipitation, evaporation and runoff in relation to the climate variability demonstrates that although the salt balance in the Colombian Basin overall is in equilibrium, the area south of 12°N is an important dilution sub-basin. In the southwest of the basin, in the region of the Panama-Colombia Gyre, Caribbean Sea Water is diluted by precipitation and runoff year round, while in the northeast, off La Guajira, its salinity increases from December to May by upwelling. At the interannual scale, continental runoff is related to El Niño Southern Oscillation, and precipitation and evaporation south of 12°N are related to the Caribbean Low Level Jet. During El Niño years the maximum salinification occurs in the dry season (December-February) while in La Niña years the maximum dilution (or freshening), reaching La Guajira Coastal Zone, occurs in the wet season (September-November).

Freshwater exchanges and surface salinity in the Colombian basin, Caribbean Sea

PubMed Central

2017-01-01

Despite the heavy regional rainfall and considerable discharge of many rivers into the Colombian Basin, there have been few detailed studies about the dilution of Caribbean Surface Water and the variability of salinity in the southwestern Caribbean. An analysis of the precipitation, evaporation and runoff in relation to the climate variability demonstrates that although the salt balance in the Colombian Basin overall is in equilibrium, the area south of 12°N is an important dilution sub-basin. In the southwest of the basin, in the region of the Panama-Colombia Gyre, Caribbean Sea Water is diluted by precipitation and runoff year round, while in the northeast, off La Guajira, its salinity increases from December to May by upwelling. At the interannual scale, continental runoff is related to El Niño Southern Oscillation, and precipitation and evaporation south of 12°N are related to the Caribbean Low Level Jet. During El Niño years the maximum salinification occurs in the dry season (December-February) while in La Niña years the maximum dilution (or freshening), reaching La Guajira Coastal Zone, occurs in the wet season (September-November). PMID:28777801

Impacts from Land Use Pattern on Spatial Distribution of Cultivated Soil Heavy Metal Pollution in Typical Rural-Urban Fringe of Northeast China

PubMed Central

Li, Wenbo; Wang, Dongyan; Wang, Qing; Liu, Shuhan; Zhu, Yuanli; Wu, Wenjun

2017-01-01

Under rapid urban sprawl in Northeast China, land conversions are not only encroaching on the quantity of cultivated lands, but also posing a great threat to black soil conservation and food security. This study’s aim is to explore the spatial relationship between comprehensive cultivated soil heavy metal pollution and peri-urban land use patterns in the black soil region. We applied spatial lag regression to analyze the relationship between PLI (pollution load index) and influencing factors of land use by taking suburban cultivated land of Changchun Kuancheng District as an empirical case. The results indicate the following: (1) Similar spatial distribution characteristics are detected between Pb, Cu, and Zn, between Cr and Ni, and between Hg and Cd. The Yitong River catchment in the central region, and the residential community of Lanjia County in the west, are the main hotspots for eight heavy metals and PLI. Beihu Wetland Park, with a larger-area distribution of ecological land in the southeast, has low level for both heavy metal concentrations and PLI values. Spatial distribution characteristics of cultivated heavy metals are related to types of surrounding land use and industry; (2) Spatial lag regression has a better fit for PLI than the ordinary least squares regression. The regression results indicate the inverse relationship between heavy metal pollution degree and distance from long-standing residential land and surface water. Following rapid urban land expansion and a longer accumulation period, residential land sprawl is going to threaten cultivated land with heavy metal pollution in the suburban black soil region, and cultivated land irrigated with urban river water in the suburbs will have a higher tendency for heavy metal pollution. PMID:28327541

Impacts from Land Use Pattern on Spatial Distribution of Cultivated Soil Heavy Metal Pollution in Typical Rural-Urban Fringe of Northeast China.

PubMed

Li, Wenbo; Wang, Dongyan; Wang, Qing; Liu, Shuhan; Zhu, Yuanli; Wu, Wenjun

2017-03-22

Under rapid urban sprawl in Northeast China, land conversions are not only encroaching on the quantity of cultivated lands, but also posing a great threat to black soil conservation and food security. This study's aim is to explore the spatial relationship between comprehensive cultivated soil heavy metal pollution and peri-urban land use patterns in the black soil region. We applied spatial lag regression to analyze the relationship between PLI (pollution load index) and influencing factors of land use by taking suburban cultivated land of Changchun Kuancheng District as an empirical case. The results indicate the following: (1) Similar spatial distribution characteristics are detected between Pb, Cu, and Zn, between Cr and Ni, and between Hg and Cd. The Yitong River catchment in the central region, and the residential community of Lanjia County in the west, are the main hotspots for eight heavy metals and PLI. Beihu Wetland Park, with a larger-area distribution of ecological land in the southeast, has low level for both heavy metal concentrations and PLI values. Spatial distribution characteristics of cultivated heavy metals are related to types of surrounding land use and industry; (2) Spatial lag regression has a better fit for PLI than the ordinary least squares regression. The regression results indicate the inverse relationship between heavy metal pollution degree and distance from long-standing residential land and surface water. Following rapid urban land expansion and a longer accumulation period, residential land sprawl is going to threaten cultivated land with heavy metal pollution in the suburban black soil region, and cultivated land irrigated with urban river water in the suburbs will have a higher tendency for heavy metal pollution.

The complete O (αs2) non-singlet heavy flavor corrections to the structure functions g1,2ep (x ,Q2), F1,2,Lep (x ,Q2), F1,2,3ν (ν bar) (x ,Q2) and the associated sum rules

NASA Astrophysics Data System (ADS)

Blümlein, Johannes; Falcioni, Giulio; De Freitas, Abilio

2016-09-01

We calculate analytically the flavor non-singlet O (αs2) massive Wilson coefficients for the inclusive neutral current non-singlet structure functions F1,2,Lep (x ,Q2) and g1,2ep (x ,Q2) and charged current non-singlet structure functions F1,2,3ν (ν bar) p (x ,Q2), at general virtualities Q2 in the deep-inelastic region. Numerical results are presented. We illustrate the transition from low to large virtualities for these observables, which may be contrasted to basic assumptions made in the so-called variable flavor number scheme. We also derive the corresponding results for the Adler sum rule, the unpolarized and polarized Bjorken sum rules and the Gross-Llewellyn Smith sum rule. There are no logarithmic corrections at large scales Q2 and the effects of the power corrections due to the heavy quark mass are of the size of the known O (αs4) corrections in the case of the sum rules. The complete charm and bottom corrections are compared to the approach using asymptotic representations in the region Q2 ≫mc,b2. We also study the target mass corrections to the above sum rules.

Hyper-IgM syndrome type 4 with a B lymphocyte–intrinsic selective deficiency in Ig class-switch recombination

PubMed Central

Imai, Kohsuke; Catalan, Nadia; Plebani, Alessandro; Maródi, László; Sanal, Özden; Kumaki, Satoru; Nagendran, Vasantha; Wood, Philip; Glastre, Catherine; Sarrot-Reynauld, Françoise; Hermine, Olivier; Forveille, Monique; Revy, Patrick; Fischer, Alain; Durandy, Anne

2003-01-01

Hyper-IgM syndrome (HIGM) is a heterogeneous condition characterized by impaired Ig class-switch recombination (CSR). The molecular defects that have so far been associated with this syndrome — which affect the CD40 ligand in HIGM type 1 (HIGM1), CD40 in HIGM3, and activation-induced cytidine deaminase (AID) in HIGM2 — do not account for all cases. We investigated the clinical and immunological characteristics of 15 patients with an unidentified form of HIGM. Although the clinical manifestations were similar to those observed in HIGM2, these patients exhibited a slightly milder HIGM syndrome with residual IgG production. We found that B cell CSR was intrinsically impaired. However, the generation of somatic hypermutations was observed in the variable region of the Ig heavy chain gene, as in control B lymphocytes. In vitro studies showed that the molecular defect responsible for this new HIGM entity (HIGM4) occurs downstream of the AID activity, as the AID gene was induced normally and AID-induced DNA double-strand breaks in the switch μ region of the Ig heavy chain locus were detected during CSR as normal. Thus, HIGM4 is probably the consequence of a selective defect either in a CSR-specific factor of the DNA repair machinery or in survival signals delivered to switched B cells. PMID:12840068

Heavy Metal Pollution in a Soil-Rice System in the Yangtze River Region of China.

PubMed

Liu, Zhouping; Zhang, Qiaofen; Han, Tiqian; Ding, Yanfei; Sun, Junwei; Wang, Feijuan; Zhu, Cheng

2015-12-22

Heavy metals are regarded as toxic trace elements in the environment. Heavy metal pollution in soil or rice grains is of increasing concern. In this study, 101 pairs of soil and rice samples were collected from the major rice-producing areas along the Yangtze River in China. The soil properties and heavy metal (i.e., Cd, Hg, Pb and Cr) concentrations in the soil and rice grains were analyzed to evaluate the heavy metal accumulation characteristics of the soil-rice systems. The results showed that the Cd, Hg, Pb and Cr concentrations in the soil ranged from 0.10 to 4.64, 0.01 to 1.46, 7.64 to 127.56, and 13.52 to 231.02 mg·kg(-)¹, respectively. Approximately 37%, 16%, 60% and 70% of the rice grain samples were polluted by Cd, Hg, Pb, and Cr, respectively. The degree of heavy metal contamination in the soil-rice systems exhibited a regional variation. The interactions among the heavy metal elements may also influence the migration and accumulation of heavy metals in soil or paddy rice. The accumulation of heavy metals in soil and rice grains is related to a certain extent to the pH and soil organic matter (SOM). This study provides useful information regarding heavy metal accumulation in soil to support the safe production of rice in China. The findings from this study also provide a robust scientific basis for risk assessments regarding ecological protection and food safety.

Heavy Metal Pollution in a Soil-Rice System in the Yangtze River Region of China

PubMed Central

Liu, Zhouping; Zhang, Qiaofen; Han, Tiqian; Ding, Yanfei; Sun, Junwei; Wang, Feijuan; Zhu, Cheng

2015-01-01

Heavy metals are regarded as toxic trace elements in the environment. Heavy metal pollution in soil or rice grains is of increasing concern. In this study, 101 pairs of soil and rice samples were collected from the major rice-producing areas along the Yangtze River in China. The soil properties and heavy metal (i.e., Cd, Hg, Pb and Cr) concentrations in the soil and rice grains were analyzed to evaluate the heavy metal accumulation characteristics of the soil-rice systems. The results showed that the Cd, Hg, Pb and Cr concentrations in the soil ranged from 0.10 to 4.64, 0.01 to 1.46, 7.64 to 127.56, and 13.52 to 231.02 mg·kg−1, respectively. Approximately 37%, 16%, 60% and 70% of the rice grain samples were polluted by Cd, Hg, Pb, and Cr, respectively. The degree of heavy metal contamination in the soil-rice systems exhibited a regional variation. The interactions among the heavy metal elements may also influence the migration and accumulation of heavy metals in soil or paddy rice. The accumulation of heavy metals in soil and rice grains is related to a certain extent to the pH and soil organic matter (SOM). This study provides useful information regarding heavy metal accumulation in soil to support the safe production of rice in China. The findings from this study also provide a robust scientific basis for risk assessments regarding ecological protection and food safety. PMID:26703698

Large-scale sequence and structural comparisons of human naive and antigen-experienced antibody repertoires

PubMed Central

DeKosky, Brandon J.; Lungu, Oana I.; Park, Daechan; Johnson, Erik L.; Charab, Wissam; Chrysostomou, Constantine; Kuroda, Daisuke; Ellington, Andrew D.; Ippolito, Gregory C.; Gray, Jeffrey J.; Georgiou, George

2016-01-01

Elucidating how antigen exposure and selection shape the human antibody repertoire is fundamental to our understanding of B-cell immunity. We sequenced the paired heavy- and light-chain variable regions (VH and VL, respectively) from large populations of single B cells combined with computational modeling of antibody structures to evaluate sequence and structural features of human antibody repertoires at unprecedented depth. Analysis of a dataset comprising 55,000 antibody clusters from CD19+CD20+CD27− IgM-naive B cells, >120,000 antibody clusters from CD19+CD20+CD27+ antigen–experienced B cells, and >2,000 RosettaAntibody-predicted structural models across three healthy donors led to a number of key findings: (i) VH and VL gene sequences pair in a combinatorial fashion without detectable pairing restrictions at the population level; (ii) certain VH:VL gene pairs were significantly enriched or depleted in the antigen-experienced repertoire relative to the naive repertoire; (iii) antigen selection increased antibody paratope net charge and solvent-accessible surface area; and (iv) public heavy-chain third complementarity-determining region (CDR-H3) antibodies in the antigen-experienced repertoire showed signs of convergent paired light-chain genetic signatures, including shared light-chain third complementarity-determining region (CDR-L3) amino acid sequences and/or Vκ,λ–Jκ,λ genes. The data reported here address several longstanding questions regarding antibody repertoire selection and development and provide a benchmark for future repertoire-scale analyses of antibody responses to vaccination and disease. PMID:27114511

40 CFR 1037.640 - Variable vehicle speed limiters.

Code of Federal Regulations, 2012 CFR

2012-07-01

... 40 Protection of Environment 34 2012-07-01 2012-07-01 false Variable vehicle speed limiters. 1037... POLLUTION CONTROLS CONTROL OF EMISSIONS FROM NEW HEAVY-DUTY MOTOR VEHICLES Special Compliance Provisions § 1037.640 Variable vehicle speed limiters. This section specifies provisions that apply for vehicle...

40 CFR 1037.640 - Variable vehicle speed limiters.

Code of Federal Regulations, 2013 CFR

2013-07-01

... 40 Protection of Environment 34 2013-07-01 2013-07-01 false Variable vehicle speed limiters. 1037... POLLUTION CONTROLS CONTROL OF EMISSIONS FROM NEW HEAVY-DUTY MOTOR VEHICLES Special Compliance Provisions § 1037.640 Variable vehicle speed limiters. This section specifies provisions that apply for vehicle...

Spatio-Temporal Variability of Urban Heat Island and Urban Mobility

NASA Astrophysics Data System (ADS)

Kar, B.; Omitaomu, O.

2017-12-01

A 2016 report by the U.S. Census stated that while the rural areas cover 97% of the U.S. landmass, these areas house only 19.7% of the nation's population. Given that the U.S. coastal counties are home to more than 50% of the U.S. population, these urban areas are clustered along the coast that is susceptible to sea level rise induced impacts. In light of increasing climate variability and extreme events, it is pertinent to understand the Urban Heat Island (UHI) effect that results from increasing population density and mobility in the urban areas, and that contributes to increased energy consumption and temperature as well as unmitigated flooding events. For example, in Illinois, warmer summers contribute to heavy precipitation that overwhelms the region's drainage capacity. This study focuses on understanding the spatio-temporal variability of the relationship between population density and mobility distribution, and creation of UHI due to temperature change in selected cities across the U.S. This knowledge will help us understand the role of UHI in energy-water nexus in urban areas, specifically, energy consumption.

Effects of microphysics parameterization on simulations of summer heavy precipitation in the Yangtze-Huaihe Region, China

NASA Astrophysics Data System (ADS)

Kan, Yu; Chen, Bo; Shen, Tao; Liu, Chaoshun; Qiao, Fengxue

2017-09-01

It has been a longstanding problem for current weather/climate models to accurately predict summer heavy precipitation over the Yangtze-Huaihe Region (YHR) which is the key flood-prone area in China with intensive population and developed economy. Large uncertainty has been identified with model deficiencies in representing precipitation processes such as microphysics and cumulus parameterizations. This study focuses on examining the effects of microphysics parameterization on the simulation of different type of heavy precipitation over the YHR taking into account two different cumulus schemes. All regional persistent heavy precipitation events over the YHR during 2008-2012 are classified into three types according to their weather patterns: the type I associated with stationary front, the type II directly associated with typhoon or with its spiral rain band, and the type III associated with strong convection along the edge of the Subtropical High. Sixteen groups of experiments are conducted for three selected cases with different types and a local short-time rainstorm in Shanghai, using the WRF model with eight microphysics and two cumulus schemes. Results show that microphysics parameterization has large but different impacts on the location and intensity of regional heavy precipitation centers. The Ferrier (microphysics) -BMJ (cumulus) scheme and Thompson (microphysics) - KF (cumulus) scheme most realistically simulates the rain-bands with the center location and intensity for type I and II respectively. For type III, the Lin microphysics scheme shows advantages in regional persistent cases over YHR, while the WSM5 microphysics scheme is better in local short-term case, both with the BMJ cumulus scheme.

Identification of human antibody fragment clones specific for tetanus toxoid in a bacteriophage. lambda. immunoexpression library

DOE Office of Scientific and Technical Information (OSTI.GOV)

Mullinax, R.L.; Gross, E.A.; Amberg, J.R.

1990-10-01

The authors have applied a molecular biology approach to the identification of human monoclonal antibodies. Human peripheral blood lymphocyte mRNA was converted to cDNA and a select subset was amplified by the polymerase chain reaction. These products, containing coding sequences for numerous immunoglobulin heavy- and {kappa} light-chain variable and constant region domains, were inserted into modified bacteriophase {lambda} expression vectors and introduced into Escherichia coli by infection to yield a combinatorial immunoexpression library. Clones with binding activity to tetanus toxoid were identified by filter hybridization with radiolabeled antigen and appeared at a frequency of 0.2{percent} in the library. These humanmore » antigen binding fragments, consisting of a heavy-chain fragment covalently linked to a light chain, displayed high affinity of binding to tetanus toxoid with equilibrium constants in the nanomolar range but did not cross-react with other proteins tested. They estimate that this human immunoexpression library contains 20,000 clones with high affinity and specificity to our chosen antigen.« less

Unexpected sequences and structures of mtDNA required for efficient transcription from the first heavy-strand promoter

PubMed Central

Uchida, Akira; Murugesapillai, Divakaran; Kastner, Markus; Wang, Yao; Lodeiro, Maria F; Prabhakar, Shaan; Oliver, Guinevere V; Arnold, Jamie J; Maher, L James; Williams, Mark C; Cameron, Craig E

2017-01-01

Human mtDNA contains three promoters, suggesting a need for differential expression of the mitochondrial genome. Studies of mitochondrial transcription have used a reductionist approach, perhaps masking differential regulation. Here we evaluate transcription from light-strand (LSP) and heavy-strand (HSP1) promoters using templates that mimic their natural context. These studies reveal sequences upstream, hypervariable in the human population (HVR3), and downstream of the HSP1 transcription start site required for maximal yield. The carboxy-terminal tail of TFAM is essential for activation of HSP1 but not LSP. Images of the template obtained by atomic force microscopy show that TFAM creates loops in a discrete region, the formation of which correlates with activation of HSP1; looping is lost in tail-deleted TFAM. Identification of HVR3 as a transcriptional regulatory element may contribute to between-individual variability in mitochondrial gene expression. The unique requirement of HSP1 for the TFAM tail may enable its regulation by post-translational modifications. DOI: http://dx.doi.org/10.7554/eLife.27283.001 PMID:28745586

Plasma observations near Saturn - Initial results from Voyager 2

NASA Technical Reports Server (NTRS)

Bridge, H. S.; Bagenal, F.; Belcher, J. W.; Lazarus, A. J.; Mcnutt, R. L.; Sullivan, J. D.; Gazis, P. R.; Hartle, R. E.; Ogilvie, K. W.; Scudder, J. D.

1982-01-01

Results of plasma measurements made by Voyager 2 in the vicinity of Saturn are discussed and compared with those made by Pioneer 11 and Voyager 1 in a more limited range of latitudes. The initial bow shock crossing on the inbound trajectory closely agreed with the shock position inferred from the external ram pressure in the solar wind, although boundaries on the outbound pass were much further out than expected. Magnetospheric plasma observations reveal the presence of (1) shocked solar wind plasma in the magnetosheath between 30 and 22 Saturn radii; (2) a variable density region between 17 Saturn radii and the magnetopause; (3) an extended thick plasma sheet between 17 and 7 Saturn radii; and (4) an inner plasma torus probably originating from local sources. The ratio of heavy to light ions was observed to vary with distance to the equatorial plane in the dayside magnetosphere, with the heavy ions, probably O(+), more closely confined to the equatorial plane. The plasma data also account for the observed inner boundary of the neutral hydrogen torus discovered by Voyager 1.

Synthetic generation of spatially high resolution extreme rainfall in Japan using Monte Carlo simulation with AMeDAS analyzed rainfall data sets

NASA Astrophysics Data System (ADS)

Haruki, W.; Iseri, Y.; Takegawa, S.; Sasaki, O.; Yoshikawa, S.; Kanae, S.

2016-12-01

Natural disasters caused by heavy rainfall occur every year in Japan. Effective countermeasures against such events are important. In 2015, a catastrophic flood occurred in Kinu river basin, which locates in the northern part of Kanto region. The remarkable feature of this flood event was not only in the intensity of rainfall but also in the spatial characteristics of heavy rainfall area. The flood was caused by continuous overlapping of heavy rainfall area over the Kinu river basin, suggesting consideration of spatial extent is quite important to assess impacts of heavy rainfall events. However, the spatial extent of heavy rainfall events cannot be properly measured through rainfall measurement by rain gauges at observation points. On the other hand, rainfall measurements by radar observations provide spatially and temporarily high resolution rainfall data which would be useful to catch the characteristics of heavy rainfall events. For long term effective countermeasure, extreme heavy rainfall scenario considering rainfall area and distribution is required. In this study, a new method for generating extreme heavy rainfall events using Monte Carlo Simulation has been developed in order to produce extreme heavy rainfall scenario. This study used AMeDAS analyzed precipitation data which is high resolution grid precipitation data made by Japan Meteorological Agency. Depth area duration (DAD) analysis has been conducted to extract extreme rainfall events in the past, considering time and spatial scale. In the Monte Carlo Simulation, extreme rainfall event is generated based on events extracted by DAD analysis. Extreme heavy rainfall events are generated in specific region in Japan and the types of generated extreme heavy rainfall events can be changed by varying the parameter. For application of this method, we focused on Kanto region in Japan. As a result, 3000 years rainfall data are generated. 100 -year probable rainfall and return period of flood in Kinu River Basin (2015) are obtained using generated data. We compared 100-year probable rainfall calculated by this method with other traditional method. New developed method enables us to generate extreme rainfall events considering time and spatial scale and produce extreme rainfall scenario.

Muscular tissues of the squid Doryteuthis pealeii express identical myosin heavy chain isoforms: an alternative mechanism for tuning contractile speed

PubMed Central

Shaffer, Justin F.; Kier, William M.

2012-01-01

SUMMARY The speed of muscle contraction is largely controlled at the sarcomere level by the ATPase activity of the motor protein myosin. Differences in amino acid sequence in catalytically important regions of myosin yield different myosin isoforms with varying ATPase activities and resulting differences in cross-bridge cycling rates and interfilamentary sliding velocities. Modulation of whole-muscle performance by changes in myosin isoform ATPase activity is regarded as a universal mechanism to tune contractile properties, especially in vertebrate muscles. Invertebrates such as squid, however, may exhibit an alternative mechanism to tune contractile properties that is based on differences in muscle ultrastructure, including variable myofilament and sarcomere lengths. To determine definitively whether contractile properties of squid muscles are regulated via different myosin isoforms (i.e. different ATPase activities), the nucleotide and amino acid sequences of the myosin heavy chain from the squid Doryteuthis pealeii were determined from the mantle, arm, tentacle, fin and funnel retractor musculature. We identified three myosin heavy chain isoforms in squid muscular tissues, with differences arising at surface loop 1 and the carboxy terminus. All three isoforms were detected in all five tissues studied. These results suggest that the muscular tissues of D. pealeii express identical myosin isoforms, and it is likely that differences in muscle ultrastructure, not myosin ATPase activity, represent the most important mechanism for tuning contractile speeds. PMID:22189767

Implications of soil pollution with heavy metals for public health

NASA Astrophysics Data System (ADS)

Juozulynas, Algirdas; Jurgelėnas, Antanas; Butkienė, Birutė; Greičiūtė, Kristina; Savičiūtė, Rasa

2008-01-01

Soil of military grounds is often polluted with heavy metals. Their concentrations may be dosens of times higher in polluted regions. The affected soils are permeable, so the pollutions can get into water and spread to the environment. Into human and animal organisms they can get with food and water. Heavy metals are very dangerous for people's health, and we must know their accumulation places, intensity of scatter and integral risk for health. The purpose of this work was to establish links between zones polluted with heavy metals and morbidity caused by pollution with heavy metals. The morbidity caused by heavy metals (Pb, Cu, Zn, Ca and other) in the polluted regions is 1.4-1.5 times higher for adults and teenagers and 1.5-3.9 times higher for children aged under 14 years than the mean morbidity of the same diseases in Lithuania. Hypothetically, it is possible to prognosticate that this problem will grow in future because the ratio of the newly registered and the existing cases of morbidity for children aged under 14 years is 1.3-1.5 times higher than for adults.

[Spatial variability and evaluation of soil heavy metal contamination in the urban-transect of Shanghai].

PubMed

Liu, Yun-Long; Zhang, Li-Jia; Han, Xiao-Fei; Zhuang, Teng-Fei; Shi, Zhen-Xiang; Lu, Xiao-Zhe

2012-02-01

Soil heavy metal concentrations along the typical urban-transect in Shanghai were analyzed to indicate the effect of urbanization and industrialization on soil environment quality. Spatial variation structure and distribution of 5 heavy metals (Cu, Cr, Mn, Pb and Zn) in the top soil of urban-transect were analyzed. The single pollution index and the composite pollution index were used to evaluate the soil heavy metal pollution. The results showed that the average concentrations of the Cu, Pb, Zn, Cr, Mn were 27.80, 28.86, 99.36, 87.72, 556.97 mg x kg(-1), respectively. Cu, Cr, Mn, Pb and Zn were medium in variability, Mn was distributed lognormally, while Cu, Cr, Pb and Zn were distributed normally. The results of semivariance analysis showed that Mn was fit for the exponential model, Cr, Pb, Cu and Zn were fit for the linear model. The spatial distribution maps of heavy metal content of the topsoil in this city-transect were produced by means of the universal kriging interpolation. Cu was spatially distributed in ribbon, Cr and Mn were distributed in island, while the spatial distribution of Pb and Zn showed the mixed characteristic of ribbon and island. With the result of soil pollution evaluation, it showed that the pollution of Cr, Zn and Pb was relatively severe. Cr, Zn, Pb, Mn and Cu were significantly correlated, and heavy metal co-contamination existed in soil. Difference of soil heavy metals pollution along "Urban-suburban-rural" was obvious, the special variation of heavy metal concentrations in the soil closely related to the degree of industrialization and urbanization of the city.

Baseline survey of sediments and marine organisms in Liaohe Estuary: Heavy metals, polychlorinated biphenyls and organochlorine pesticides.

PubMed

Li, Hongjun; Ye, Sheng; Ye, Jinqing; Fan, Jingfeng; Gao, Meiling; Guo, Hao

2017-01-15

A geographically extensive investigation was carried out to analyze the concentrations of heavy metals, PCBs and OCPs in the sediments and marine organisms collected from the Liaohe Estuary. In order to determine the spatial distribution and potential ecological risk of heavy metals, the surface sediments were collected from 44 sites in the Liaohe Estuary. The results showed that the heavy metal contents in the sediments were observed in the following order: Cr (11.2-84.8mg/kg)>Cu (1.7-47.9mg/kg)>Pb (4.3-28.3mg/kg)>As (1.61-12.77mg/kg)>Cd (0.06-0.47mg/kg)>Hg (0.005-0.113mg/kg). In comparison with the concentrations of heavy metals and POPs in other regions, the concentrations of As, Pb and DDTs in the Liaohe Estuary were generally low, and other pollutant concentrations were inconsistent with those reported in other regions. The contamination factor (CF), the pollution load index (PLI), the geoaccumulation index and the potential ecological risk index were used to analyze the pollution situation, which showed that the heavy metal pollution in Liaohe Estuary is mainly dominated by Cd and Hg. The concentrations of the four heavy metals varied significantly in the three kinds of tested organisms (fish, mollusk and crustacean), indicating the different accumulative abilities of the species. The results obtained in this study provide useful information background information for further ecology investigation and management in this region. Copyright © 2016. Published by Elsevier Ltd.

[MONITORING OF THE CONTENT OF HEAVY METALS AND ELEMENTS IN THE SNOW COVER IN AGRICULTURAL SOILS AT THE TERRITORY OF THE MOSCOW REGION].

PubMed

Ermakov, A A; Karpova, E A; Malysheva, A G; Mikhaylova, R I; Ryzhova, I N

2015-01-01

The monitoring of snow cover pollution by heavy metals and elements (zinc, copper, lead, cadmium, arsenic, nickel, chromium, strontium, manganese, fluorine, lithium) was performed in 20 districts of the Moscow region in 2009, 2012 and 2013. The assessment of the levels of contamination by heavy metals and elements was given by means of comparison of them with the average values in the snow cover near Moscow in the end of the last century and in some areas of the world, that no exposed to technological environmental impact. 7 districts of Moscow region were characterized by a high content of lead and cadmium in the snow water. It requires the control of water, soil and agricultural products pollution.

Variable-Structure Control of a Model Glider Airplane

NASA Technical Reports Server (NTRS)

Waszak, Martin R.; Anderson, Mark R.

2008-01-01

A variable-structure control system designed to enable a fuselage-heavy airplane to recover from spin has been demonstrated in a hand-launched, instrumented model glider airplane. Variable-structure control is a high-speed switching feedback control technique that has been developed for control of nonlinear dynamic systems.

Preferrential rearrangement in normal rabbits of the 3' VHa allotype gene that is deleted in Alicia mutants; somatic hypermutation/conversion may play a major role in generating the heterogeneity of rabbit heavy chain variable region sequences.

PubMed

Allegrucci, M; Young-Cooper, G O; Alexander, C B; Newman, B A; Mage, R G

1991-02-01

The rabbit is unique in having well-defined allotypes in the variable region of the heavy chain. Products of the VHa locus, (with alleles a1, a2, and a3), account for the majority of the serum immunoglobulins. A small percentage of the serum immunoglobulins are a-negative. In 1986, Kelus and Weiss described a mutation that depressed the expression of the Ig VH a2 genes in an a1/a2 rabbit. From this animal the Alicia rabbit strain was developed and the mutation was termed ali. We previously showed, using Southern analysis and the transverse alternating field electrophoresis technique, that the difference between the ali rabbit and normal is a relatively small deletion including some of the most 3' VH genes. The most JH proximal 3' VH1 genes in DNA from normal rabbits of a1, a2 and a3 haplotypes encode a1, a2 and a3 molecules respectively, and it has been suggested that these genes are responsible for allelic inheritance of VHa allotypes. The present study suggests that the 3' end of the VH locus probably plays a key role in regulation of VH gene expression in rabbits because VH gene(s) in this region are the target(s) of preferential VDJ rearrangements. This raises the possibility that mechanisms such as somatic gene conversion and hypermutation are at work to generate the antibody repertoire in this species. Our data support the view that the 3' VH1 gene may be the preferred target for rearrangement in normal rabbits, and for the normal chromosome in heterozygous ali animals. However, homozygous ali rabbits with a deletion that removed the a2-encoding VH1 on both chromosomes do survive, rearrange other VH genes and produce normal levels of immunoglobulins as well as a significant percentage of B cells which bear the a2 allotype. This challenges the view that one VH gene, VH1, is solely responsible for the inheritance pattern of VHa allotypes.

Chicken immunoglobulin gamma-heavy chains: limited VH gene repertoire, combinatorial diversification by D gene segments and evolution of the heavy chain locus.

PubMed

Parvari, R; Avivi, A; Lentner, F; Ziv, E; Tel-Or, S; Burstein, Y; Schechter, I

1988-03-01

cDNA clones encoding the variable and constant regions of chicken immunoglobulin (Ig) gamma-chains were obtained from spleen cDNA libraries. Southern blots of kidney DNA show that the variable region sequences of eight cDNA clones reveal the same set of bands corresponding to approximately 30 cross-hybridizing VH genes of one subgroup. Since the VH clones were randomly selected, it is likely that the bulk of chicken H-chains are encoded by a single VH subgroup. Nucleotide sequence determinations of two cDNA clones reveal VH, D, JH and the constant region. The VH segments are closely related to each other (83% homology) as expected for VH or the same subgroup. The JHs are 15 residues long and differ by one amino acid. The Ds differ markedly in sequence (20% homology) and size (10 and 20 residues). These findings strongly indicate multiple (at least two) D genes which by a combinatorial joining mechanism diversify the H-chains, a mechanism which is not operative in the chicken L-chain locus. The most notable among the chicken Igs is the so-called 7S IgG because its H-chain differs in many important aspects from any mammalian IgG. The sequence of the C gamma cDNA reported here resolves this issue. The chicken C gamma is 426 residues long with four CH domains (unlike mammalian C gamma which has three CH domains) and it shows 25% homology to the chicken C mu. The chicken C gamma is most related to the mammalian C epsilon in length, the presence of four CH domains and the distribution of cysteines in the CH1 and CH2 domains. We propose that the unique chicken C gamma is the ancestor of the mammalian C epsilon and C gamma subclasses, and discuss the evolution of the H-chain locus from that of chicken with presumably three genes (mu, gamma, alpha) to the mammalian loci with 8-10 H-chain genes.

Towards combining GPM and MFG observations to monitor near real time heavy precipitation at fine scale over India and nearby oceanic regions

NASA Astrophysics Data System (ADS)

Mishra, Anoop; Rafiq, Mohammd

2017-12-01

This is the first attempt to merge highly accurate precipitation estimates from Global Precipitation Measurement (GPM) with gap free satellite observations from Meteosat to develop a regional rainfall monitoring algorithm to estimate heavy rainfall over India and nearby oceanic regions. Rainfall signature is derived from Meteosat observations and is co-located against rainfall from GPM to establish a relationship between rainfall and signature for various rainy seasons. This relationship can be used to monitor rainfall over India and nearby oceanic regions. Performance of this technique was tested by applying it to monitor heavy precipitation over India. It is reported that our algorithm is able to detect heavy rainfall. It is also reported that present algorithm overestimates rainfall areal spread as compared to rain gauge based rainfall product. This deficiency may arise from various factors including uncertainty caused by use of different sensors from different platforms (difference in viewing geometry from MFG and GPM), poor relationship between warm rain (light rain) and IR brightness temperature, and weak characterization of orographic rain from IR signature. We validated hourly rainfall estimated from the present approach with independent observations from GPM. We also validated daily rainfall from this approach with rain gauge based product from India Meteorological Department (IMD). Present technique shows a Correlation Coefficient (CC) of 0.76, a bias of -2.72 mm, a Root Mean Square Error (RMSE) of 10.82 mm, Probability of Detection (POD) of 0.74, False Alarm Ratio (FAR) of 0.34 and a Skill score of 0.36 with daily rainfall from rain gauge based product of IMD at 0.25° resolution. However, FAR reduces to 0.24 for heavy rainfall events. Validation results with rain gauge observations reveal that present technique outperforms available satellite based rainfall estimates for monitoring heavy rainfall over Indian region.

Progressing from Light Experimentation to Heavy Episodic Drinking in Early and Middle Adolescence

PubMed Central

Guilamo-Ramos, Vincent; Turrisi, Rob; Jaccard, James; Wood, Elizabeth; Gonzalez, Bernardo

2010-01-01

Objective Few studies have examined psychological variables related to changes in drinking patterns from light experimentation with alcohol to heavy episodic drinking in early and middle adolescence. The present study examined parental and peer influences, gender and grade level as predictors of such changes in adolescent alcohol consumption. Method Approximately 1,420 light drinkers were analyzed from Wave 1 of the National Longitudinal Study of Adolescent Health (Add Health). Heavy episodic drinking activity was assessed 1 year later. Results Gender differences in transitions to heavy episodic drinking were observed, with males being more likely than females to make a transition. Parent parameter setting and communication variables, as well as peer variables at different grade levels, buffered these gender differences. Conclusions Adolescents who are light experimenters represent a high-risk group as a consequence of their initial consumption tendencies. Some of these adolescents graduated beyond simple experimentation and moved into patterns of consumption that could be considered dangerous. Our analyses implicated an array of parental-based buffers: parent involvement in the adolescent’s life, development of good communication patterns and expressions of warmth and affection. Minimizing associations with peers who consume alcohol may also have a buffering effect. There was evidence that these buffers may dampen gender differences not so much by affecting female drinking tendencies as by keeping males at reduced levels of alcohol consumption comparable to those of females. PMID:15376824

Assessment of the Weather Research and Forecasting (WRF) model for simulation of extreme rainfall events in the upper Ganga Basin

NASA Astrophysics Data System (ADS)

Chawla, Ila; Osuri, Krishna K.; Mujumdar, Pradeep P.; Niyogi, Dev

2018-02-01

Reliable estimates of extreme rainfall events are necessary for an accurate prediction of floods. Most of the global rainfall products are available at a coarse resolution, rendering them less desirable for extreme rainfall analysis. Therefore, regional mesoscale models such as the advanced research version of the Weather Research and Forecasting (WRF) model are often used to provide rainfall estimates at fine grid spacing. Modelling heavy rainfall events is an enduring challenge, as such events depend on multi-scale interactions, and the model configurations such as grid spacing, physical parameterization and initialization. With this background, the WRF model is implemented in this study to investigate the impact of different processes on extreme rainfall simulation, by considering a representative event that occurred during 15-18 June 2013 over the Ganga Basin in India, which is located at the foothills of the Himalayas. This event is simulated with ensembles involving four different microphysics (MP), two cumulus (CU) parameterizations, two planetary boundary layers (PBLs) and two land surface physics options, as well as different resolutions (grid spacing) within the WRF model. The simulated rainfall is evaluated against the observations from 18 rain gauges and the Tropical Rainfall Measuring Mission Multi-Satellite Precipitation Analysis (TMPA) 3B42RT version 7 data. From the analysis, it should be noted that the choice of MP scheme influences the spatial pattern of rainfall, while the choice of PBL and CU parameterizations influences the magnitude of rainfall in the model simulations. Further, the WRF run with Goddard MP, Mellor-Yamada-Janjic PBL and Betts-Miller-Janjic CU scheme is found to perform best in simulating this heavy rain event. The selected configuration is evaluated for several heavy to extremely heavy rainfall events that occurred across different months of the monsoon season in the region. The model performance improved through incorporation of detailed land surface processes involving prognostic soil moisture evolution in Noah scheme compared to the simple Slab model. To analyse the effect of model grid spacing, two sets of downscaling ratios - (i) 1 : 3, global to regional (G2R) scale and (ii) 1 : 9, global to convection-permitting scale (G2C) - are employed. Results indicate that a higher downscaling ratio (G2C) causes higher variability and consequently large errors in the simulations. Therefore, G2R is adopted as a suitable choice for simulating heavy rainfall event in the present case study. Further, the WRF-simulated rainfall is found to exhibit less bias when compared with the NCEP FiNaL (FNL) reanalysis data.

Effects of light sources and intensity on broilers grown to heavy weights: Hematophysiological and biochemical assessment.

USDA-ARS?s Scientific Manuscript database

Most governments around the world including the USA have passed measures to phase out incandescent light bulbs in favor of more energy-efficient lighting alternatives. Research is limited on blood physiological variables of broilers grown to heavy weights (> 3 kg) under these new light sources to en...

Observations of Heavy Ions in the Magnetosphere

NASA Astrophysics Data System (ADS)

Kistler, L. M.

2017-12-01

There are two sources for the hot ions in the magnetosphere: the solar wind and the ionosphere. The solar wind is predominantly protons, with about 4% He++ and less than 1% other high charge state heavy ions. The ionospheric outflow is also predominantly H+, but can contain a significant fraction of heavy ions including O+, N+, He+, O++, and molecular ions (NO+, N2+, O2+). The ionospheric outflow composition varies significantly both with geomagnetic activity and with solar EUV. The variability in the contribution of the two sources, the variability in the ionospheric source itself, and the transport paths of the different species are all important in determining the ion composition at a given location in the magnetosphere. In addition to the source variations, loss processes within the magnetosphere can be mass dependent, changing the composition. In particular, charge exchange is strongly species dependent, and can lead to heavy ion dominance at some energies in the inner magnetosphere. In this talk we will review the current state of our understanding of the composition of the magnetosphere and the processes that determine it.

Speeding for fun? Exploring the speeding behavior of riders of heavy motorcycles using the theory of planned behavior and psychological flow theory.

PubMed

Chen, Ching-Fu; Chen, Cheng-Wen

2011-05-01

This paper focuses on a special segment of motorcyclists in Taiwan--riders of heavy motorcycles--and investigates their speeding behavior and its affecting factors. It extends the theory of planned behavior (TPB) to explore motorcyclist speeding behavior by including the variables of psychological flow theory. The levels of sensation-seeking and riding experience are also used as grouping variables to investigate group differences from the influences of their affecting factors on speeding behavior. The results reveal that the psychological flow variables have greater predictive power in explaining speeding behavior than the TPB variables, providing useful insights into the unique nature of this group of motorcyclists, who are more prone to engage in speeding. Group differences with regard to both sensation-seeking and rider experience in speeding behavior are highlighted, and the implications of the findings are discussed. Copyright © 2010 Elsevier Ltd. All rights reserved.

Peptide docking of HIV-1 p24 with single chain fragment variable (scFv) by CDOCKER algorithm

NASA Astrophysics Data System (ADS)

Karim, Hana Atiqah Abdul; Tayapiwatana, Chatchai; Nimmanpipug, Piyarat; Zain, Sharifuddin M.; Rahman, Noorsaadah Abdul; Lee, Vannajan Sanghiran

2014-10-01

In search for the important residues that might have involve in the binding interaction between the p24 caspid protein of HIV-1 fragment (MET68 - PRO90) with the single chain fragment variable (scFv) of FAB23.5, modern computational chemistry approach has been conducted and applied. The p24 fragment was initially taken out from the 1AFV protein molecule consisting of both light (VL) and heavy (VH) chains of FAB23.5 as well as the HIV-1 caspid protein. From there, the p24 (antigen) fragment was made to dock back into the protein pocket receptor (antibody) by using the CDOCKER algorithm to conduct the molecular docking process. The score calculated from the CDOCKER gave 15 possible docked poses with various docked ligand's positions, the interaction energy as well as the binding energy. The best docked pose that imitates the original antigen's position was determined and further processed to the In Situ minimization to obtain the residues interaction energy as well as to observe the hydrogen bonds interaction in the protein-peptide complex. Based on the results demonstrated, the specific residues in the complex that have shown immense lower interaction energies in the 5Å vicinity region from the peptide are from the heavy chain (VH:TYR105) and light chain (VL: ASN31, TYR32, and GLU97). Those residues play vital roles in the binding mechanism of Antibody-Antigen (Ab-Ag) complex of p24 with FAB23.5.

Vertical characterization of soil contamination using multi-way modeling--a case study.

PubMed

Singh, Kunwar P; Malik, Amrita; Basant, Ankita; Ojha, Priyanka

2008-11-01

This study describes application of chemometric multi-way modeling approach to analyze the dataset pertaining to soils of industrial area with a view to assess the soil/sub-soil contamination, accumulation pathways and mobility of contaminants in the soil profiles. The three-way (sampling depths, chemical variables, sampling sites) dataset on heavy metals in soil samples collected from three different sites in an industrial area, up to a depth of 60 m each was analyzed using three-way Tucker3 model validated for stability and goodness of fit. A two component Tucker3 model, explaining 66.6% of data variance, allowed interpretation of the data information in all the three modes. The interpretation of core elements revealing interactions among the components of different modes (depth, variables, sites) allowed inferring more realistic information about the contamination pattern of soils both along the horizontal and vertical coordinates, contamination pathways, and mobility of contaminants through soil profiles, as compared to the traditional data analysis techniques. It concluded that soils at site-1 and site-2 are relatively more contaminated with heavy metals of both the natural as well as anthropogenic origins, as compared to the soil of site-3. Moreover, the accumulation pathways of metals for upper shallow layers and deeper layers of soils in the area were differentiated. The information generated would be helpful in developing strategies for remediation of the contaminated soils for reducing the subsequent risk of ground-water contamination in the study region.

Application of stochastic models in identification and apportionment of heavy metal pollution sources in the surface soils of a large-scale region.

PubMed

Hu, Yuanan; Cheng, Hefa

2013-04-16

As heavy metals occur naturally in soils at measurable concentrations and their natural background contents have significant spatial variations, identification and apportionment of heavy metal pollution sources across large-scale regions is a challenging task. Stochastic models, including the recently developed conditional inference tree (CIT) and the finite mixture distribution model (FMDM), were applied to identify the sources of heavy metals found in the surface soils of the Pearl River Delta, China, and to apportion the contributions from natural background and human activities. Regression trees were successfully developed for the concentrations of Cd, Cu, Zn, Pb, Cr, Ni, As, and Hg in 227 soil samples from a region of over 7.2 × 10(4) km(2) based on seven specific predictors relevant to the source and behavior of heavy metals: land use, soil type, soil organic carbon content, population density, gross domestic product per capita, and the lengths and classes of the roads surrounding the sampling sites. The CIT and FMDM results consistently indicate that Cd, Zn, Cu, Pb, and Cr in the surface soils of the PRD were contributed largely by anthropogenic sources, whereas As, Ni, and Hg in the surface soils mostly originated from the soil parent materials.

Association between heavy metal and metalloid levels in topsoil and cancer mortality in Spain.

PubMed

Núñez, Olivier; Fernández-Navarro, Pablo; Martín-Méndez, Iván; Bel-Lan, Alejandro; Locutura Rupérez, Juan F; López-Abente, Gonzalo

2017-03-01

Spatio-temporal cancer mortality studies in Spain have revealed patterns for some tumours which display a distribution that is similar across the sexes and persists over time. Such characteristics would be common to tumours that shared risk factors, including the geochemical composition of the soil. The aim of this study was to assess the possible association between heavy metal and metalloid levels in topsoil (upper soil horizon) and cancer mortality in mainland Spain. Ecological cancer mortality study at a municipal level, covering 861,440 cancer deaths (27 different tumour locations) in 7917 Spanish mainland towns, from 1999 to 2008. The elements included in this analysis were Al, As, Cd, Cr, Cu, Fe, Mn, Ni, Pb and Zn. Topsoil levels (partial extraction) were determined by ICP-MS at 13,317 sampling points. For the analysis, the data on the topsoil composition have been transformed by the centred logratio (clr-transformation). Principal factor analysis was performed to obtain independent latent factors for the transformed variables. To estimate the effect of heavy metal levels in topsoil composition on mortality, we fitted Besag, York and Mollié models, which included each town's factor scores as the explanatory variable. Integrated Nested Laplace Approximation (INLA) was used as a tool for Bayesian inference. All results were adjusted for sociodemographic variables. The results showed an association between trace contents of heavy metals and metalloids in topsoil and mortality due to tumours of the digestive system in mainland Spain. This association was observed in both sexes, something that would support the hypothesis that the incorporation of heavy metals into the trophic chain might be playing a role in the aetiology of some types of cancer. Topsoil composition and the presence of potentially toxic elements in trace concentrations might be an additional component in the aetiology of some types of cancer, and go some way to determine the ensuing geographic differences in mortality in Spain. The results support the interest of inclusion of heavy metal levels in topsoil as a hypothesis in analytical epidemiological studies using biological markers of exposure to heavy metals and metalloids.

Spatial working memory in heavy cannabis users: a functional magnetic resonance imaging study.

PubMed

Kanayama, Gen; Rogowska, Jadwiga; Pope, Harrison G; Gruber, Staci A; Yurgelun-Todd, Deborah A

2004-11-01

Many neuropsychological studies have documented deficits in working memory among recent heavy cannabis users. However, little is known about the effects of cannabis on brain activity. We assessed brain function among recent heavy cannabis users while they performed a working memory task. Functional magnetic resonance imaging was used to examine brain activity in 12 long-term heavy cannabis users, 6-36 h after last use, and in 10 control subjects while they performed a spatial working memory task. Regional brain activation was analyzed and compared using statistical parametric mapping techniques. Compared with controls, cannabis users exhibited increased activation of brain regions typically used for spatial working memory tasks (such as prefrontal cortex and anterior cingulate). Users also recruited additional regions not typically used for spatial working memory (such as regions in the basal ganglia). These findings remained essentially unchanged when re-analyzed using subjects' ages as a covariate. Brain activation showed little or no significant correlation with subjects' years of education, verbal IQ, lifetime episodes of cannabis use, or urinary cannabinoid levels at the time of scanning. Recent cannabis users displayed greater and more widespread brain activation than normal subjects when attempting to perform a spatial working memory task. This observation suggests that recent cannabis users may experience subtle neurophysiological deficits, and that they compensate for these deficits by "working harder"-calling upon additional brain regions to meet the demands of the task.

Understanding impacts of climatic extremes on diarrheal disease epidemics: Insights from mechanistic disease propagation models

NASA Astrophysics Data System (ADS)

Jutla, A.; Akanda, A. S.; Colwell, R. R.

2013-12-01

An epidemic outbreak of diarrheal diseases (primarily cholera) in Haiti in 2010 is a reminder that our understanding on disease triggers, transmission and spreading mechanisms is incomplete. Cholera can occur in two forms - epidemic (defined as sudden outbreak in a historically disease free region) and endemic (recurrence and persistence of the disease for several consecutive years). Examples of countries with epidemic cholera include Pakistan (2008), Congo (2008), and most recently Haiti (2010). A significant difference between endemic and epidemic regions is the mortality rate, i.e., 1% or lower in an endemic regions versus 3-7% during recent epidemic outbreaks. A fundamentally transformational approach - a warning system with several months prediction lead time - is needed to prevent disease outbreak and minimize its impact on population. Lack of information on spatial and temporal variability of disease incidence as well as transmission in human population continues to be significant challenge in the development of early-warning systems for cholera. Using satellite data on regional hydroclimatic processes, water and sanitation infrastructure indices, and biological pathogen growth information, here we present a Simple, Mechanistic, Adaptive, Remote sensing based Regional Transmission or SMART model to (i) identify regions of potential cholera outbreaks and (ii) quantify mechanism of spread of the disease in previously disease free region. Our results indicate that epidemic regions are located near regional rivers and are characterized by sporadic outbreaks, which are likely to be initiated during episodes of prevailing warm air temperature with low river flows, creating favorable environmental conditions for the growth of cholera bacteria. Heavy rainfall, through inundation or breakdown of sanitary infrastructure, accelerates interaction between contaminated water and human activities, resulting in an epidemic. We discuss the above findings in light of increased climatic variability, such as acceleration of hydrological cycle, hydroclimatic hazards, etc on diarrheal disease outbreaks.

Racial/Ethnic Disparities in Alcohol-related Problems: Differences by Gender and Level of Heavy Drinking

PubMed Central

Witbrodt, Jane; Mulia, Nina; Zemore, Sarah E.; Kerr, William C.

2014-01-01

Objective While prior studies have reported racial/ethnic disparities in alcohol-related problems at a given level of heavy drinking, particularly lower levels, it is unclear whether these occur in both genders and are an artifact of racial/ethnic differences in drink alcohol content. Such information is important to understanding disparities and developing specific, targeted interventions. This study addresses these questions and examines disparities in specific types of alcohol problems across racial-gender groups. Method Using 2005 and 2010 National Alcohol Survey data (N=7,249 current drinkers), gender-stratified regression analyses were conducted to assess black-white and Hispanic-white disparities in alcohol dependence and negative drinking consequences at equivalent levels of heavy drinking. Heavy drinking was measured using a gender-specific, composite drinking-patterns variable derived through factor analysis. Analyses were replicated using adjusted-alcohol consumption variables that account for group differences in drink alcohol content based on race/ethnicity, gender, age and alcoholic beverage. Results Compared to white men, black and Hispanic men had higher rates of injuries/accidents/health and social consequences, and marginally greater work/legal consequences (p< .10). Hispanic women had marginally higher rates of social consequences. In main effects models controlling for demographics, light drinking and heavy drinking, only black women and men had greater odds of alcohol-related problems relative to whites. Interaction models indicated that compared to whites, black women had greater odds of dependence at all levels of heavy drinking, while both black and Hispanic men had elevated risk of alcohol problems only at lower levels of heavy drinking. Drink alcohol content adjustments did not significantly alter findings for either gender. Conclusions This study highlights the gender-specific nature of racial/ethnic disparities. Interventions focused on reducing heavy drinking might not address disparities in alcohol-related problems that exist at low levels of heavy drinking. Future research should consider the potential role of environmental and genetic factors in these disparities. PMID:24730475

Russell body inducing threshold depends on the variable domain sequences of individual human IgG clones and the cellular protein homeostasis.

PubMed

Stoops, Janelle; Byrd, Samantha; Hasegawa, Haruki

2012-10-01

Russell bodies are intracellular aggregates of immunoglobulins. Although the mechanism of Russell body biogenesis has been extensively studied by using truncated mutant heavy chains, the importance of the variable domain sequences in this process and in immunoglobulin biosynthesis remains largely unknown. Using a panel of structurally and functionally normal human immunoglobulin Gs, we show that individual immunoglobulin G clones possess distinctive Russell body inducing propensities that can surface differently under normal and abnormal cellular conditions. Russell body inducing predisposition unique to each immunoglobulin G clone was corroborated by the intrinsic physicochemical properties encoded in the heavy chain variable domain/light chain variable domain sequence combinations that define each immunoglobulin G clone. While the sequence based intrinsic factors predispose certain immunoglobulin G clones to be more prone to induce Russell bodies, extrinsic factors such as stressful cell culture conditions also play roles in unmasking Russell body propensity from immunoglobulin G clones that are normally refractory to developing Russell bodies. By taking advantage of heterologous expression systems, we dissected the roles of individual subunit chains in Russell body formation and examined the effect of non-cognate subunit chain pair co-expression on Russell body forming propensity. The results suggest that the properties embedded in the variable domain of individual light chain clones and their compatibility with the partnering heavy chain variable domain sequences underscore the efficiency of immunoglobulin G biosynthesis, the threshold for Russell body induction, and the level of immunoglobulin G secretion. We propose that an interplay between the unique properties encoded in variable domain sequences and the state of protein homeostasis determines whether an immunoglobulin G expressing cell will develop the Russell body phenotype in a dynamic cellular setting. Copyright © 2012 Elsevier B.V. All rights reserved.

An Integrated Probabilistic-Fuzzy Assessment of Uncertainty Associated with Human Health Risk to MSW Landfill Leachate Contamination

NASA Astrophysics Data System (ADS)

Mishra, H.; Karmakar, S.; Kumar, R.

2016-12-01

Risk assessment will not remain simple when it involves multiple uncertain variables. Uncertainties in risk assessment majorly results from (1) the lack of knowledge of input variable (mostly random), and (2) data obtained from expert judgment or subjective interpretation of available information (non-random). An integrated probabilistic-fuzzy health risk approach has been proposed for simultaneous treatment of random and non-random uncertainties associated with input parameters of health risk model. The LandSim 2.5, a landfill simulator, has been used to simulate the Turbhe landfill (Navi Mumbai, India) activities for various time horizons. Further the LandSim simulated six heavy metals concentration in ground water have been used in the health risk model. The water intake, exposure duration, exposure frequency, bioavailability and average time are treated as fuzzy variables, while the heavy metals concentration and body weight are considered as probabilistic variables. Identical alpha-cut and reliability level are considered for fuzzy and probabilistic variables respectively and further, uncertainty in non-carcinogenic human health risk is estimated using ten thousand Monte-Carlo simulations (MCS). This is the first effort in which all the health risk variables have been considered as non-deterministic for the estimation of uncertainty in risk output. The non-exceedance probability of Hazard Index (HI), summation of hazard quotients, of heavy metals of Co, Cu, Mn, Ni, Zn and Fe for male and female population have been quantified and found to be high (HI>1) for all the considered time horizon, which evidently shows possibility of adverse health effects on the population residing near Turbhe landfill.

Understanding Oceanic Heavy Precipitation Using Scatterometer, Satellite Precipitation, and Reanalysis Products

NASA Technical Reports Server (NTRS)

Garg, Piyush; Nesbitt, Stephen W.; Lang, Timothy J.; Chronis, Themis

2016-01-01

The primary aim of this study is to understand the heavy precipitation events over Oceanic regions using vector wind retrievals from space based scatterometers in combination with precipitation products from satellite and model reanalysis products. Heavy precipitation over oceans is a less understood phenomenon and this study tries to fill in the gaps which may lead us to a better understanding of heavy precipitation over oceans. Various phenomenon may lead to intense precipitation viz. MJO (Madden-Julian Oscillation), Extratropical cyclones, MCSs (Mesoscale Convective Systems), that occur inside or outside the tropics and if we can decipher the physical mechanisms behind occurrence of heavy precipitation, then it may lead us to a better understanding of such events which further may help us in building more robust weather and climate models. During a heavy precipitation event, scatterometer wind observations may lead us to understand the governing dynamics behind that event near the surface. We hypothesize that scatterometer winds can observe significant changes in the near-surface circulation and that there are global relationships among these quantities. To the degree to which this hypothesis fails, we will learn about the regional behavior of heavy precipitation-producing systems over the ocean. We use a "precipitation feature" (PF) approach to enable statistical analysis of a large database of raining features.

Heavy Tail Behavior of Rainfall Extremes across Germany

NASA Astrophysics Data System (ADS)

Castellarin, A.; Kreibich, H.; Vorogushyn, S.; Merz, B.

2017-12-01

Distributions are termed heavy-tailed if extreme values are more likely than would be predicted by probability distributions that have exponential asymptotic behavior. Heavy-tail behavior often leads to surprise, because historical observations can be a poor guide for the future. Heavy-tail behavior seems to be widespread for hydro-meteorological extremes, such as extreme rainfall and flood events. To date there have been only vague hints to explain under which conditions these extremes show heavy-tail behavior. We use an observational data set consisting of 11 climate variables at 1440 stations across Germany. This homogenized, gap-free data set covers 110 years (1901-2010) at daily resolution. We estimate the upper tail behavior, including its uncertainty interval, of daily precipitation extremes for the 1,440 stations at the annual and seasonal time scales. Different tail indicators are tested, including the shape parameter of the Generalized Extreme Value distribution, the upper tail ratio and the obesity index. In a further step, we explore to which extent the tail behavior can be explained by geographical and climate factors. A large number of characteristics is derived, such as station elevation, degree of continentality, aridity, measures for quantifying the variability of humidity and wind velocity, or event-triggering large-scale atmospheric situation. The link between the upper tail behavior and these characteristics is investigated via data mining methods capable of detecting non-linear relationships in large data sets. This exceptionally rich observational data set, in terms of number of stations, length of time series and number of explaining variables, allows insights into the upper tail behavior which is rarely possible given the typical observational data sets available.

Differences between men and women in substance use: the role of educational level and employment status.

PubMed

Teixidó-Compañó, Ester; Espelt, Albert; Sordo, Luis; Bravo, María J; Sarasa-Renedo, Ana; Indave, B Iciar; Bosque-Prous, Marina; Brugal, M Teresa

To determine differences between men and women in hazardous drinking, heavy cannabis use and hypnosedative use according to educational level and employment status in the economically active population in Spain. Cross-sectional study with data from 2013 Spanish Household Survey on Alcohol and Drugs on individuals aged 25-64 [n=14,113 (women=6,171; men=7,942)]. Dependent variables were hazardous drinking, heavy cannabis use and hypnosedative consumption; the main independent variables were educational level and employment situation. Associations between dependent and independent variables were calculated with Poisson regression models with robust variance. All analyses were stratified by sex. Hazardous drinking and heavy cannabis use were higher in men, while women consumed more hypnosedatives. The lower the educational level, the greater the gender differences in the prevalence of this substances owing to different consumption patterns in men and women. While men with a lower educational level were higher hazardous drinkers [RII=2.57 (95%CI: 1.75-3.78)] and heavy cannabis users [RII=3.03 (95%CI: 1.88-4.89)] compared to higher educational level, in women the prevalence was the same. Women with a lower education level and men with a higher education level had higher hypnosedative consumption. Unemployment was associated with increased heavy cannabis use and hypnosedative use in both women and men and with lower hazardous drinking only in women. There are differences between men and women in the use of psychoactive substances that can be explained by the unequal distribution of substance use in them according to educational level. Unemployment was associated with substance use in both men and women. Copyright © 2017 SESPAS. Publicado por Elsevier España, S.L.U. All rights reserved.

Heavy metals in drinking water: Occurrences, implications, and future needs in developing countries.

PubMed

Chowdhury, Shakhawat; Mazumder, M A Jafar; Al-Attas, Omar; Husain, Tahir

2016-11-01

Heavy metals in drinking water pose a threat to human health. Populations are exposed to heavy metals primarily through water consumption, but few heavy metals can bioaccumulate in the human body (e.g., in lipids and the gastrointestinal system) and may induce cancer and other risks. To date, few thousand publications have reported various aspects of heavy metals in drinking water, including the types and quantities of metals in drinking water, their sources, factors affecting their concentrations at exposure points, human exposure, potential risks, and their removal from drinking water. Many developing countries are faced with the challenge of reducing human exposure to heavy metals, mainly due to their limited economic capacities to use advanced technologies for heavy metal removal. This paper aims to review the state of research on heavy metals in drinking water in developing countries; understand their types and variability, sources, exposure, possible health effects, and removal; and analyze the factors contributing to heavy metals in drinking water. This study identifies the current challenges in developing countries, and future research needs to reduce the levels of heavy metals in drinking water. Copyright © 2016 Elsevier B.V. All rights reserved.

[Construction of dengue virus-specific full-length fully human antibody libraries by mammalian display technology].

PubMed

Wen, Yangming; Lan, Kaijian; Wang, Junjie; Yu, Jingyi; Qu, Yarong; Zhao, Wei; Zhang, Fuchun; Tan, Wanlong; Cao, Hong; Zhou, Chen

2013-06-01

To construct dengue virus-specific full-length fully human antibody libraries using mammalian cell surface display technique. Total RNA was extracted from peripheral blood mononuclear cells (PBMCs) from convalescent patients with dengue fever. The reservoirs of the light chain and heavy chain variable regions (LCκ and VH) of the antibody genes were amplified by RT-PCR and inserted into the vector pDGB-HC-TM separately to construct the light chain and heavy chain libraries. The library DNAs were transfected into CHO cells and the expression of full-length fully human antibodies on the surface of CHO cells was analyzed by flow cytometry. Using 1.2 µg of the total RNA isolated from the PBMCs as the template, the LCκ and VH were amplified and the full-length fully human antibody mammalian display libraries were constructed. The kappa light chain gene library had a size of 1.45×10(4) and the heavy chain gene library had a size of 1.8×10(5). Sequence analysis showed that 8 out of the 10 light chain clones and 7 out of the 10 heavy chain clones randomly picked up from the constructed libraries contained correct open reading frames. FACS analysis demonstrated that all the 15 clones with correct open reading frames expressed full-length antibodies, which could be detected on CHO cell surfaces. After co-transfection of the heavy chain and light chain gene libraries into CHO cells, the expression of full-length antibodies on CHO cell surfaces could be detected by FACS analysis with an expressible diversity of the antibody library reaching 1.46×10(9) [(1.45×10(4)×80%)×(1.8×10(5)×70%)]. Using 1.2 µg of total RNA as template, the LCκ and VH full-length fully human antibody libraries against dengue virus have been successfully constructed with an expressible diversity of 10(9).

Partial versus Productive Immunoglobulin Heavy Locus Rearrangements in Chronic Lymphocytic Leukemia: Implications for B-Cell Receptor Stereotypy

PubMed Central

Tsakou, Eugenia; Agathagelidis, Andreas; Boudjoghra, Myriam; Raff, Thorsten; Dagklis, Antonis; Chatzouli, Maria; Smilevska, Tatjana; Bourikas, George; Merle-Beral, Helene; Manioudaki-Kavallieratou, Eleni; Anagnostopoulos, Achilles; Brüggemann, Monika; Davi, Frederic; Stamatopoulos, Kostas; Belessi, Chrysoula

2012-01-01

The frequent occurrence of stereotyped heavy complementarity-determining region 3 (VH CDR3) sequences among unrelated cases with chronic lymphocytic leukemia (CLL) is widely taken as evidence for antigen selection. Stereotyped VH CDR3 sequences are often defined by the selective association of certain immunoglobulin heavy diversity (IGHD) genes in specific reading frames with certain immunoglobulin heavy joining (IGHJ ) genes. To gain insight into the mechanisms underlying VH CDR3 restrictions and also determine the developmental stage when restrictions in VH CDR3 are imposed, we analyzed partial IGHD-IGHJ rearrangements (D-J) in 829 CLL cases and compared the productively rearranged D-J joints (that is, in-frame junctions without junctional stop codons) to (a) the productive immunoglobulin heavy variable (IGHV )-IGHD-IGHJ rearrangements (V-D-J) from the same cases and (b) 174 D-J rearrangements from 160 precursor B-cell acute lymphoblastic leukemia cases (pre-B acute lymphoblastic leukemia [ALL]). Partial D-J rearrangements were detected in 272/829 CLL cases (32.8%). Sequence analysis was feasible in 238 of 272 D-J rearrangements; 198 of 238 (83.2%) were productively rearranged. The D-J joints in CLL did not differ significantly from those in pre-B ALL, except for higher frequency of the IGHD7-27 and IGHJ6 genes in the latter. Among CLL carrying productively rearranged D-J, comparison of the IGHD gene repertoire in productive V-D-J versus D-J revealed the following: (a) overuse of IGHD reading frames encoding hydrophilic peptides among V-D-J and (b) selection of the IGHD3-3 and IGHD6-19 genes in V-D-J junctions. These results document that the IGHD and IGHJ gene biases in the CLL expressed VH CDR3 repertoire are not stochastic but are directed by selection operating at the immunoglobulin protein level. PMID:21968789

Quantitative assessment of atmospheric emissions of toxic heavy metals from anthropogenic sources in China: historical trend, spatial distribution, uncertainties, and control policies

NASA Astrophysics Data System (ADS)

Tian, H. Z.; Zhu, C. Y.; Gao, J. J.; Cheng, K.; Hao, J. M.; Wang, K.; Hua, S. B.; Wang, Y.; Zhou, J. R.

2015-09-01

Anthropogenic atmospheric emissions of typical toxic heavy metals have caused worldwide concern due to their adverse effects on human health and the ecosystem. By determining the best available representation of time-varying emission factors with S-shape curves, we establish the multiyear comprehensive atmospheric emission inventories of 12 typical toxic heavy metals (Hg, As, Se, Pb, Cd, Cr, Ni, Sb, Mn, Co, Cu, and Zn) from primary anthropogenic activities in China for the period of 1949-2012 for the first time. Further, we allocate the annual emissions of these heavy metals in 2010 at a high spatial resolution of 0.5° × 0.5° grid with ArcGIS methodology and surrogate indexes, such as regional population and gross domestic product (GDP). Our results show that the historical emissions of Hg, As, Se, Cd, Cr, Ni, Sb, Mn, Co, Cu, and Zn, during the period of 1949-2012, increased by about 22-128 times at an annual average growth rate of 5.1-8.0 %, reaching about 526.9-22 319.6 t in 2012. Nonferrous metal smelting, coal combustion of industrial boilers, brake and tyre wear, and ferrous metal smelting represent the dominant sources of heavy metal emissions. In terms of spatial variation, the majority of emissions are concentrated in relatively developed regions, especially for the northern, eastern, and southern coastal regions. In addition, because of the flourishing nonferrous metal smelting industry, several southwestern and central-southern provinces play a prominent role in some specific toxic heavy metals emissions, like Hg in Guizhou and As in Yunnan. Finally, integrated countermeasures are proposed to minimize the final toxic heavy metals discharge on account of the current and future demand of energy-saving and pollution reduction in China.

Open Heavy Flavor and Quarkonia Results at RHIC

DOE Office of Scientific and Technical Information (OSTI.GOV)

Nouicer, Rachid

RHIC experiments carry out a comprehensive physics program which studies open heavy flavor and quarkonium production in relativistic heavy-ion collisions. The discovery at RHIC of large high-pT suppression and flow of electrons from heavy quarks flavors have altered our view of the hot and dense matter formed in central Au + Au collisions at √S NN = 200 GeV. These results suggest a large energy loss and flow of heavy quarks in the hot, dense matter. In recent years, the RHIC experiments upgraded the detectors; (1) PHENIX Collaboration installed silicon vertex tracker (VTX) at mid-rapidity region and forward silicon vertexmore » tracker (FVTX) at the forward rapidity region, and (2) STAR Collaboration installed the heavy flavor tracker (HFT) and the muon telescope detector (MTD) both at the mid-rapidity region. With these new upgrades, both experiments have collected large data samples. These new detectors enhance the capability of heavy flavor measurements via precision tracking. The PHENIX experiments established measurements of ψ(1S) and ψ(2S) production as a function of system size, p + p, p + Al, p + Au, and 3He + Au collisions at √S NN = 200 GeV. In p/ 3He + A collisions at forward rapidity, we observe no difference in the ψ(2S)/ψ(1S) ratio relative to p + p collisions. At backward rapidity, where the comoving particle density is higher, we find that the ψ(2S) is preferentially suppressed by a factor of two. STAR Collaboration presents the first J/ψ and Υ measurements in the di-muon decay channel in Au + Au collisions at GeV at mid-rapidity at RHIC. Here, we observe clear J/ψ RAA suppression and qualitatively well described by transport models simultaneously accounting for dissociation and regeneration processes.« less

Open Heavy Flavor and Quarkonia Results at RHIC

NASA Astrophysics Data System (ADS)

Nouicer, Rachid

2017-12-01

RHIC experiments carry out a comprehensive physics program which studies open heavy flavor and quarkonium production in relativistic heavy-ion collisions. The discovery at RHIC of large high-pT suppression and flow of electrons from heavy quarks flavors have altered our view of the hot and dense matter formed in central Au + Au collisions at GeV. These results suggest a large energy loss and flow of heavy quarks in the hot, dense matter. In recent years, the RHIC experiments upgraded the detectors; (1) PHENIX Collaboration installed silicon vertex tracker (VTX) at mid-rapidity region and forward silicon vertex tracker (FVTX) at the forward rapidity region, and (2) STAR Collaboration installed the heavy flavor tracker (HFT) and the muon telescope detector (MTD) both at the mid-rapidity region. With these new upgrades, both experiments have collected large data samples. These new detectors enhance the capability of heavy flavor measurements via precision tracking. The PHENIX experiments established measurements of ψ(1S) and ψ(2S) production as a function of system size, p + p, p + Al, p + Au, and 3He + Au collisions at GeV. In p/3He + A collisions at forward rapidity, we observe no difference in the ψ(2S)/ψ(1S) ratio relative to p + p collisions. At backward rapidity, where the comoving particle density is higher, we find that the ψ(2S) is preferentially suppressed by a factor of two. STAR Collaboration presents the first J/ψ and ϒ measurements in the di-muon decay channel in Au + Au collisions at GeV at mid-rapidity at RHIC. We observe clear J/ψ RAA suppression and qualitatively well described by transport models simultaneously accounting for dissociation and regeneration processes.

Open Heavy Flavor and Quarkonia Results at RHIC

DOE PAGES

Nouicer, Rachid

2017-12-05

RHIC experiments carry out a comprehensive physics program which studies open heavy flavor and quarkonium production in relativistic heavy-ion collisions. The discovery at RHIC of large high-pT suppression and flow of electrons from heavy quarks flavors have altered our view of the hot and dense matter formed in central Au + Au collisions at √S NN = 200 GeV. These results suggest a large energy loss and flow of heavy quarks in the hot, dense matter. In recent years, the RHIC experiments upgraded the detectors; (1) PHENIX Collaboration installed silicon vertex tracker (VTX) at mid-rapidity region and forward silicon vertexmore » tracker (FVTX) at the forward rapidity region, and (2) STAR Collaboration installed the heavy flavor tracker (HFT) and the muon telescope detector (MTD) both at the mid-rapidity region. With these new upgrades, both experiments have collected large data samples. These new detectors enhance the capability of heavy flavor measurements via precision tracking. The PHENIX experiments established measurements of ψ(1S) and ψ(2S) production as a function of system size, p + p, p + Al, p + Au, and 3He + Au collisions at √S NN = 200 GeV. In p/ 3He + A collisions at forward rapidity, we observe no difference in the ψ(2S)/ψ(1S) ratio relative to p + p collisions. At backward rapidity, where the comoving particle density is higher, we find that the ψ(2S) is preferentially suppressed by a factor of two. STAR Collaboration presents the first J/ψ and Υ measurements in the di-muon decay channel in Au + Au collisions at GeV at mid-rapidity at RHIC. Here, we observe clear J/ψ RAA suppression and qualitatively well described by transport models simultaneously accounting for dissociation and regeneration processes.« less

Drawing Trees with Perfect Angular Resolution and Polynomial Area

DTIC Science & Technology

2010-01-01

depends on the curvature of the two heavy edges incident to v. Our construction in this section uses the invariant that a heavy path P at level j is drawn...4.1 Drawing heavy paths Let P = (v1, . . . ,vk) be a heavy path at level j of the heavy-path decomposition that is rooted at the last node vk. We...If both angles equal π , then we can consider both regions small zones. For a node vi at level j of H(T ) we define the radius ri of Di as ri = 4h(T

Bovid ecomorphology and hominin paleoenvironments of the Shungura Formation, lower Omo River Valley, Ethiopia.

PubMed

Plummer, Thomas W; Ferraro, Joseph V; Louys, Julien; Hertel, Fritz; Alemseged, Zeresenay; Bobe, René; Bishop, L C

2015-11-01

The Shungura Formation in the lower Omo River Valley, southern Ethiopia, has yielded an important paleontological and archeological record from the Pliocene and Pleistocene of eastern Africa. Fossils are common throughout the sequence and provide evidence of paleoenvironments and environmental change through time. This study developed discriminant function ecomorphology models that linked astragalus morphology to broadly defined habitat categories (open, light cover, heavy cover, forest, and wetlands) using modern bovids of known ecology. These models used seven variables suitable for use on fragmentary fossils and had overall classification success rates of >82%. Four hundred and one fossils were analyzed from Shungura Formation members B through G (3.4-1.9 million years ago). Analysis by member documented the full range of ecomorph categories, demonstrating that a wide range of habitats existed along the axis of the paleo-Omo River. Heavy cover ecomorphs, reflecting habitats such as woodland and heavy bushland, were the most common in the fossil sample. The trend of increasing open cover habitats from Members C through F suggested by other paleoenvironmental proxies was documented by the increase in open habitat ecomorphs during this interval. However, finer grained analysis demonstrated considerable variability in ecomorph frequencies over time, suggesting that substantial short-term variability is masked when grouping samples by member. The hominin genera Australopithecus, Homo, and Paranthropus are associated with a range of ecomorphs, indicating that all three genera were living in temporally variable and heterogeneous landscapes. Australopithecus finds were predominantly associated with lower frequencies of open habitat ecomorphs, and high frequencies of heavy cover ecomorphs, perhaps indicating a more woodland focus for this genus. Copyright © 2015 Elsevier Ltd. All rights reserved.

Effect of body mass and midsole hardness on kinetic and perceptual variables during basketball landing manoeuvres.

PubMed

Nin, Darren Z; Lam, Wing K; Kong, Pui W

2016-01-01

This study investigated the effects of body mass and shoe midsole hardness on kinetic and perceptual variables during the performance of three basketball movements: (1) the first and landing steps of layup, (2) shot-blocking landing and (3) drop landing. Thirty male basketball players, assigned into "heavy" (n = 15, mass 82.7 ± 4.3 kg) or "light" (n = 15, mass 63.1 ± 2.8 kg) groups, performed five trials of each movement in three identical shoes of varying midsole hardness (soft, medium, hard). Vertical ground reaction force (VGRF) during landing was sampled using multiple wooden-top force plates. Perceptual responses on five variables (forefoot cushioning, rearfoot cushioning, forefoot stability, rearfoot stability and overall comfort) were rated after each movement condition using a 150-mm Visual Analogue Scale (VAS). A mixed factorial analysis of variance (ANOVA) (Body Mass × Shoe) was applied to all kinetic and perceptual variables. During the first step of the layup, the loading rate associated with rearfoot contact was 40.7% higher in the "heavy" than "light" groups (P = .014) and 12.4% higher in hard compared with soft shoes (P = .011). Forefoot peak VGRF in a soft shoe was higher (P = .011) than in a hard shoe during shot-block landing. Both "heavy" and "light" groups preferred softer to harder shoes. Overall, body mass had little effect on kinetic or perceptual variables.

Joint measurements of black carbon and particle mass for heavy-duty diesel vehicles using a portable emission measurement system

EPA Science Inventory

The black carbon (BC) emitted from heavy-duty diesel vehicles(HDDVs) is an important source of urban atmospheric pollution and createsstrong climate-forcing impacts. The emission ratio of BC to totalparticle mass (PM) (i.e., BC/PM ratio) is an essential variable used toestimate t...

Humanization of Antibodies Using Heavy Chain Complementarity-determining Region 3 Grafting Coupled with in Vitro Somatic Hypermutation*

PubMed Central

Bowers, Peter M.; Neben, Tamlyn Y.; Tomlinson, Geoffery L.; Dalton, Jennifer L.; Altobell, Larry; Zhang, Xue; Macomber, John L.; Wu, Betty F.; Toobian, Rachelle M.; McConnell, Audrey D.; Verdino, Petra; Chau, Betty; Horlick, Robert A.; King, David J.

2013-01-01

A method for simultaneous humanization and affinity maturation of monoclonal antibodies has been developed using heavy chain complementarity-determining region (CDR) 3 grafting combined with somatic hypermutation in vitro. To minimize the amount of murine antibody-derived antibody sequence used during humanization, only the CDR3 region from a murine antibody that recognizes the cytokine hβNGF was grafted into a nonhomologous human germ line V region. The resulting CDR3-grafted HC was paired with a CDR-grafted light chain, displayed on the surface of HEK293 cells, and matured using in vitro somatic hypermutation. A high affinity humanized antibody was derived that was considerably more potent than the parental antibody, possessed a low pm dissociation constant, and demonstrated potent inhibition of hβNGF activity in vitro. The resulting antibody contained half the heavy chain murine donor sequence compared with the same antibody humanized using traditional methods. PMID:23355464

Structure-based engineering to restore high affinity binding of an isoform-selective anti-TGFβ1 antibody

PubMed Central

Honey, Denise M.; Best, Annie; Qiu, Huawei

2018-01-01

ABSTRACT Metelimumab (CAT192) is a human IgG4 monoclonal antibody developed as a TGFβ1-specific antagonist. It was tested in clinical trials for the treatment of scleroderma but later terminated due to lack of efficacy. Subsequent characterization of CAT192 indicated that its TGFβ1 binding affinity was reduced by ∼50-fold upon conversion from the parental single-chain variable fragment (scFv) to IgG4. We hypothesized this result was due to decreased conformational flexibility of the IgG that could be altered via engineering. Therefore, we designed insertion mutants in the elbow region and screened for binding and potency. Our results indicated that increasing the elbow region linker length in each chain successfully restored the isoform-specific and high affinity binding of CAT192 to TGFβ1. The crystal structure of the high binding affinity mutant displays large conformational rearrangements of the variable domains compared to the wild-type antigen-binding fragment (Fab) and the low binding affinity mutants. Insertion of two glycines in both the heavy and light chain elbow regions provided sufficient flexibility for the variable domains to extend further apart than the wild-type Fab, and allow the CDR3s to make additional interactions not seen in the wild-type Fab structure. These interactions coupled with the dramatic conformational changes provide a possible explanation of how the scFv and elbow-engineered Fabs bind TGFβ1 with high affinity. This study demonstrates the benefits of re-examining both structure and function when converting scFv to IgG molecules, and highlights the potential of structure-based engineering to produce fully functional antibodies. PMID:29333938

Heavy metal accumulations in cacao (Theobroma cacao L.) leaves and cocoa beans grown at three main cacao growing regions of Peru

USDA-ARS?s Scientific Manuscript database

Peru is one of the leading exporters of organic cocoa beans in the world. However, the accumulation of heavy metals in cacao beans represents a considerable quality problem. The aim of this study was to investigate the distribution and accumulation of heavy metals in cacao plants grown at three dif...

Analysis of convection-permitting simulations for capturing heavy rainfall events over Myanmar Region

NASA Astrophysics Data System (ADS)

Acierto, R. A. E.; Kawasaki, A.

2017-12-01

Perennial flooding due to heavy rainfall events causes strong impacts on the society and economy. With increasing pressures of rapid development and potential for climate change impacts, Myanmar experiences a rapid increase in disaster risk. Heavy rainfall hazard assessment is key on quantifying such disaster risk in both current and future conditions. Downscaling using Regional Climate Models (RCM) such as Weather Research and Forecast model have been used extensively for assessing such heavy rainfall events. However, usage of convective parameterizations can introduce large errors in simulating rainfall. Convective-permitting simulations have been used to deal with this problem by increasing the resolution of RCMs to 4km. This study focuses on the heavy rainfall events during the six-year (2010-2015) wet period season from May to September in Myanmar. The investigation primarily utilizes rain gauge observation for comparing downscaled heavy rainfall events in 4km resolution using ERA-Interim as boundary conditions using 12km-4km one-way nesting method. The study aims to provide basis for production of high-resolution climate projections over Myanmar in order to contribute for flood hazard and risk assessment.

Regional probabilistic risk assessment of heavy metals in different environmental media and land uses: An urbanization-affected drinking water supply area

NASA Astrophysics Data System (ADS)

Peng, Chi; Cai, Yimin; Wang, Tieyu; Xiao, Rongbo; Chen, Weiping

2016-11-01

In this study, we proposed a Regional Probabilistic Risk Assessment (RPRA) to estimate the health risks of exposing residents to heavy metals in different environmental media and land uses. The mean and ranges of heavy metal concentrations were measured in water, sediments, soil profiles and surface soils under four land uses along the Shunde Waterway, a drinking water supply area in China. Hazard quotients (HQs) were estimated for various exposure routes and heavy metal species. Riverbank vegetable plots and private vegetable plots had 95th percentiles of total HQs greater than 3 and 1, respectively, indicating high risks of cultivation on the flooded riverbank. Vegetable uptake and leaching to groundwater were the two transfer routes of soil metals causing high health risks. Exposure risks during outdoor recreation, farming and swimming along the Shunde Waterway are theoretically safe. Arsenic and cadmium were identified as the priority pollutants that contribute the most risk among the heavy metals. Sensitivity analysis showed that the exposure route, variations in exposure parameters, mobility of heavy metals in soil, and metal concentrations all influenced the risk estimates.

[Spatial variations of heavy metals in precipitation at Mount Taishan region].

PubMed

Wang, Yan; Liu, Xiao-Huan; Jin, Ling-Ren; Yue, Tai-Xing; Wang, De-Zhong; Wang, Wen-Xing

2007-11-01

Zn, Al, Mn, Fe, Pb, Cu, Ni, Cr, As, Cd in rain samples collected from two sites at Mount Taishan region were determined by ICP-MS, to evaluate the spatial variation characteristics of heavy metals in precipitation. Individual rain events were sampled for one whole year from Jan. to Dec. 2006. High concentrations of heavy metals were found at both sites, indicating serious heavy metal pollution. Zn was the most abundant element, accounting for 54% - 57% of the total metals concentrations. Its volume-weighted mean concentrations of precipitation at Mt-top and Mt-foot sites were 92.94 microg/L and 70.41 microg/L respectively. The following elements were Fe, Al and Mn and their concentrations were much higher than toxic heavy metals (As, Cd and Cd) except Pb (8.04 microg/L and 7.79 microg/L at two sites respectively). Comparison results between two sites suggested that heavy metal characteristics of precipitation at two sites were different, due to the influences of different ambient air conditions. Correlation analysis between two sites showed that Al, Mn, Fe, As, Cd, Pb influenced by air mass origin greatly, while Ni, Cu, Zn affected by other different factors.

The Glycosylphosphatidylinositol-Anchored Variable Region of Llama Heavy Chain-Only Antibody JM4 Efficiently Blocks both Cell-Free and T Cell-T Cell Transmission of Human Immunodeficiency Virus Type 1

PubMed Central

Liu, Lihong; Wang, Weiming; Matz, Julie; Ye, Chaobaihui; Bracq, Lucie; Delon, Jerome; Kimata, Jason T.; Chen, Zhiwei

2016-01-01

ABSTRACT The variable regions (VHHs) of two heavy chain-only antibodies, JM2 and JM4, from llamas that have been immunized with a trimeric gp140 bound to a CD4 mimic have been recently isolated (here referred to as VHH JM2 and VHH JM4, respectively). JM2 binds the CD4-binding site of gp120 and neutralizes HIV-1 strains from subtypes B, C, and G. JM4 binds gp120 and neutralizes HIV-1 strains from subtypes A, B, C, A/E, and G in a CD4-dependent manner. In the present study, we constructed glycosylphosphatidylinositol (GPI)-anchored VHH JM2 and JM4 along with an E4 control and transduced them into human CD4+ cell lines and primary CD4 T cells. We report that by genetically linking the VHHs with a GPI attachment signal, VHHs are targeted to the lipid rafts of the plasma membranes. Expression of GPI-VHH JM4, but not GPI-VHH E4 and JM2, on the surface of transduced TZM.bl cells potently neutralizes multiple subtypes of HIV-1 isolates, including tier 2 or 3 strains, transmitted founders, quasispecies, and soluble single domain antibody (sdAb) JM4-resistant viruses. Moreover, transduction of CEMss-CCR5 cells with GPI-VHH JM4, but not with GPI-VHH E4, confers resistance to both cell-free and T cell-T cell transmission of HIV-1 and HIV-1 envelope-mediated fusion. Finally, GPI-VHH JM4-transduced human primary CD4 T cells efficiently resist both cell-free and T cell-T cell transmission of HIV-1. Thus, we conclude that VHH JM4, when targeted to the lipid rafts of the plasma membrane, efficiently neutralizes HIV-1 infection via both cell-free and T cell-T cell transmission. Our findings should have important implications for GPI-anchored antibody-based therapy against HIV-1. IMPORTANCE Lipid rafts are specialized dynamic microdomains of the plasma membrane and have been shown to be gateways for HIV-1 budding as well as entry into T cells and macrophages. In nature, many glycosylphosphatidylinositol (GPI)-anchored proteins localize in the lipid rafts. In the present study, we developed GPI-anchored variable regions (VHHs) of two heavy chain-only antibodies, JM2 and JM4, from immunized llamas. We show that by genetically linking the VHHs with a GPI attachment signal, VHHs are targeted to the lipid rafts of the plasma membranes. GPI-VHH JM4, but not GPI-VHH JM2, in transduced CD4+ cell lines and human primary CD4 T cells not only efficiently blocks diverse HIV-1 strains, including tier 2 or 3 strains, transmitted founders, quasispecies, and soluble sdAb JM4-resistant strains, but also efficiently interferes T cell-T cell transmissions of HIV-1 and HIV-1 envelope-mediated fusion. Our findings should have important implications in GPI-anchored antibody-based therapy against HIV-1. PMID:27654286

Circulating heavy IgM in IgM nephropathy.

PubMed

Disciullo, S O; Abuelo, J G; Moalli, K; Pezzullo, J C

1988-09-01

IgM nephropathy (IgMN) causes nephrotic syndrome and is characterized by IgM mesangial deposits. It is speculated that these deposits are derived from circulating IgM aggregates or immune complexes, either of which would have a molecular weight heavier than that of normal IgM. To test this hypothesis the sera of 11 patients with IgMN, five patients with nephrotic syndrome of other etiologies, and 13 normal controls were analysed for such heavy IgM. The serum samples were passed over a Biogel A5M molecular sieve column and the fractions were tested for IgM concentration by enzyme linked immunosorbent assay (ELISA). The column effluent from the void volume to the IgM peak was divided into four equal regions, and the average IgM concentrations in each region were compared. The IgMN group had significantly higher IgM concentrations than normal controls in the heaviest region (0.81 +/- 0.84 vs. 0.32 +/- 0.17 micrograms/ml; P = 0.01) and in the lightest region (95.8 +/- 59.5 vs. 46.3 +/- 41.2 micrograms/ml; P = 0.02). Although the IgMN group appeared to have about double the IgM levels of the nephrotic control group in all four regions, this was only significant in the lightest (19S) region. In serum samples from two IgMN patient methods known to break antigen antibody bonds eliminated the heavy IgM; in one case we used gel filtration in potassium thiocyanate and in another ultracentrifugation at pH 2.8. In addition, the heavy IgM in this second patient exhibited complement fixation activity in a sandwich ELISA for IgM-C3 complexes. We conclude that IgMN patients have circulating heavy IgM, which by preliminary studies probably consists of complement fixing IgM immune complexes.

Spatial and Temporal Flood Risk Assessment for Decision Making Approach

NASA Astrophysics Data System (ADS)

Azizat, Nazirah; Omar, Wan-Mohd-Sabki Wan

2018-03-01

Heavy rainfall, adversely impacting inundation areas, depends on the magnitude of the flood. Significantly, location of settlements, infrastructure and facilities in floodplains result in many regions facing flooding risks. A problem faced by the decision maker in an assessment of flood vulnerability and evaluation of adaptation measures is recurrent flooding in the same areas. Identification of recurrent flooding areas and frequency of floods should be priorities for flood risk management. However, spatial and temporal variability become major factors of uncertainty in flood risk management. Therefore, dynamic and spatial characteristics of these changes in flood impact assessment are important in making decisions about the future of infrastructure development and community life. System dynamics (SD) simulation and hydrodynamic modelling are presented as tools for modelling the dynamic characteristics of flood risk and spatial variability. This paper discusses the integration between spatial and temporal information that is required by the decision maker for the identification of multi-criteria decision problems involving multiple stakeholders.

Multivariate-Statistical Assessment of Heavy Metals for Agricultural Soils in Northern China

PubMed Central

Yang, Pingguo; Yang, Miao; Mao, Renzhao; Shao, Hongbo

2014-01-01

The study evaluated eight heavy metals content and soil pollution from agricultural soils in northern China. Multivariate and geostatistical analysis approaches were used to determine the anthropogenic and natural contribution of soil heavy metal concentrations. Single pollution index and integrated pollution index could be used to evaluate soil heavy metal risk. The results show that the first factor explains 27.3% of the eight soil heavy metals with strong positive loadings on Cu, Zn, and Cd, which indicates that Cu, Zn, and Cd are associated with and controlled by anthropic activities. The average value of heavy metal is lower than the second grade standard values of soil environmental quality standards in China. Single pollution index is lower than 1, and the Nemerow integrated pollution index is 0.305, which means that study area has not been polluted. The semivariograms of soil heavy metal single pollution index fitted spherical and exponential models. The variable ratio of single pollution index showed moderately spatial dependence. Heavy metal contents showed relative safety in the study area. PMID:24892058

Community- and individual-level factors associated with smoking and heavy drinking among Aboriginal people in Canada.

PubMed

Kyu, Hmwe Hmwe; Georgiades, Katholiki; MacMillan, Harriet L; Boyle, Michael H

2015-02-03

1) To examine the association between place of residence (i.e., on- versus off-communities and between provinces) and daily smoking and heavy drinking among Aboriginal people in Canada; and 2) to identify community- and individual-level factors that may account for these associations. Data were from the Aboriginal Peoples Survey (2001). The sample included 52,110 Aboriginal people (≥ 15 years of age). Community-level variables included: place of residence, community socio-economic status (SES) and perceived community social problems. Individual-level variables included: age, sex, education, income, employment status, marital status, Aboriginal heritage and social support. Multilevel logistic regressions were conducted to analyze the data. Living in First Nations communities (compared with living off-communities) was associated with daily smoking, and this association was accounted for by perceived community social problems. However, the association between Inuit communities and daily smoking remained after controlling for all covariates (odds ratio (OR) = 1.97, 95% confidence intervals (CI) = 1.44-2.70). Residence in First Nations communities was associated with heavy drinking (OR = 1.54, 95% CI = 1.17-2.04), however this risk became evident only after controlling for community SES, which was also positively associated with heavy drinking (OR = 1.46, 95% CI = 1.26-1.69). Compared with Saskatchewan, Aboriginal people in Atlantic Provinces (OR = 2.80, 95% CI = 2.08-3.78) or Territories (OR = 1.39, 95% CI = 1.01-1.92) were more likely to engage in heavy drinking. Studies are needed to better understand the increased risk for smoking in Inuit communities and heavy drinking in First Nations communities, Atlantic Provinces and Territories, and to identify possible reasons for the positive association between community SES and heavy drinking among Aboriginal people.

Auditory stimulation with music influences the geometric indices of heart rate variability in men

PubMed Central

2014-01-01

Background Chronic classical music was reported to increase parasympathetic activitywhen evaluating heart rate variability (HRV). It is poor in the literature investigation of the acute effects of baroque and heavy metal styles of musical auditory stimulation on HRV. In this study we evaluated the acute effects of relaxant baroque and excitatory heavy metal music on the geometric indices of HRV in healthy men. Method The study was performed in 12 healthy men between 18 and 30 years old. We excluded persons with previous experience with music instrument and those who had affinity with the song styles. We analyzed the following indices: RRtri, TINN and Poincaré plot (SD1, SD2 and SD1/SD2 ratio). HRV was recorded at rest for ten minutes. Subsequently they were exposed to relaxant baroque or excitatory heavy metal music for five minutes through an earphone. After the first music exposure they remained at rest for more five minutes and them they were exposed again to Baroque or Heavy Metal music (65–80 dB). The sequence of songs was randomized for each individual. Results The RRTri and SD2 indices were reduced during the heavy metal musical auditory stimulation (p < 0.05). No changes were observed regarding TINN, SD1 and SD1/SD2 ratio (p > 0.05).The qualitative Poincaré plot analysis indicated that during relaxant classical baroque music there was observed a higher beat-to-beat dispersion of RR intervals compared with no music exposure and during excitatory heavy metal musical auditory stimulation, showing higher HRV. Conclusion We suggest that excitatory heavy metal music acutely decreases global HRV. PMID:24883104

Reliable cloning of functional antibody variable domains from hybridomas and spleen cell repertoires employing a reengineered phage display system.

PubMed

Krebber, A; Bornhauser, S; Burmester, J; Honegger, A; Willuda, J; Bosshard, H R; Plückthun, A

1997-02-14

A prerequisite for the use of recombinant antibody technologies starting from hybridomas or immune repertoires is the reliable cloning of functional immunoglobulin genes. For this purpose, a standard phage display system was optimized for robustness, vector stability, tight control of scFv-delta geneIII expression, primer usage for PCR amplification of variable region genes, scFv assembly strategy and subsequent directional cloning using a single rare cutting restriction enzyme. This integrated cloning, screening and selection system allowed us to rapidly obtain antigen binding scFvs derived from spleen-cell repertoires of mice immunized with ampicillin as well as from all hybridoma cell lines tested to date. As representative examples, cloning of monoclonal antibodies against a his tag, leucine zippers, the tumor marker EGP-2 and the insecticide DDT is presented. Several hybridomas whose genes could not be cloned in previous experimental setups, but were successfully obtained with the present system, expressed high amounts of aberrant heavy and light chain mRNAs, which were amplified by PCR and greatly exceeded the amount of binding antibody sequences. These contaminating variable region genes were successfully eliminated by employing the optimized phage display system, thus avoiding time consuming sequencing of non-binding scFv genes. To maximize soluble expression of functional scFvs subsequent to cloning, a compatible vector series to simplify modification, detection, multimerization and rapid purification of recombinant antibody fragments was constructed.

High resolution of anthropogenic atmospheric emissions of 12 heavy metals in the three biggest metropolitan areas, China

NASA Astrophysics Data System (ADS)

Tian, H.; Zhu, C.

2015-12-01

Atmospheric emissions of typical toxic heavy metals from anthropogenic sources have received worldwide concerns due to their adverse effects on human health and the ecosystem. An integrated inventory of anthropogenic emissions of twelve HMs (Hg, As, Se, Pb, Cd, Cr, Ni, Sb, Mn, Co, Cu and Zn) in the three biggest metropolitan areas, including Beijing-Tianjin-Hebei (BTH) region, Yangtze River Delta (YRD) region and Pearl River Delta (PRD) region, are developed for 1980-2012 by combining with detailed activity data and inter-annual dynamic emission factors which are determined by S-shaped curves on account of technology progress, economic development, and emission control. The results indicate total emissions of twelve HMs in the three metropolitan regions have increased from 5448.8 tons in 1980 to 19054.9 tons in 2012, with an annual average growth rate of about 4.0%. Due to significant difference in industrial structures and energy consumption compositions, remarkable distinctions can be observed with respect to source contributions of total HM emissions from above three metropolitan areas. Specifically, the ferrous metal smelting sector, coal combustion by industrial boilers and coal combustion by power plants are found to be the primary source of total HM emissions in the BTH region (about 34.2%), YRD region (about 28.2%) and PRD region (about 24.3%), respectively. Furthermore, we allocate the annual emissions of these heavy metals in 2012 at a high spatial resolution of 9 km × 9 km grid with ArcGIS methodology and surrogate indexes, such as regional population and gross domestic product (GDP). The peak of HM emissions are mainly distributed over the grid cells of Beijing, Tianjin, Tangshan, Shijiazhuang, Handan and Baoding in the BTH region; Shanghai, Suzhou, Wuxi, Nanjing, Hangzhou, Ningbo in the YRD region; Guangzhou, Shenzhen, Dongguan, Foshan in the PYD region, respectively. Additionally, monthly emission profiles are established in order to further identify the temporal emission characteristics of HMs. Key words: heavy metals (HMs), emission inventory, time-varying dynamic emission factor, temporal and spatial characteristics, Beijing-Tianjin-Hebei (BTH) region, Yangtze River Delta (YRD) region, Pearl River Delta (PRD) region, China

Mutation affecting the expression of immunoglobulin variable regions in the rabbit.

PubMed

Kelus, A S; Weiss, S

1986-07-01

We have found a variant of the allotype allele a2 in the rabbit, which presumably arose by mutation, that segregates as expected for an allele at the a locus. This allele is called "ali" and the corresponding rabbit strain is called "Alicia." In heterozygous animals (ali/a1 and ali/a3) the concentration of a2 molecules is lower by a factor of 1000 than in standard a2/a2 homozygotes. In homozygous ali/ali individuals the a2 concentration varies with age--i.e., very low in young rabbits and higher in older ones--but it never reaches normal levels. The low level of a2 is compensated by increased amounts of a-negative molecules. Southern blot analysis did not reveal any gross changes in the intron between JH and C mu (joining region of immunoglobulin heavy chain and constant region of immunoglobulin mu chain) or in the number of VH gene segments encoding a locus specificities. We suggest that the ali phenotype is due to a mutation in a control element.

Mutation affecting the expression of immunoglobulin variable regions in the rabbit.

PubMed Central

Kelus, A S; Weiss, S

1986-01-01

We have found a variant of the allotype allele a2 in the rabbit, which presumably arose by mutation, that segregates as expected for an allele at the a locus. This allele is called "ali" and the corresponding rabbit strain is called "Alicia." In heterozygous animals (ali/a1 and ali/a3) the concentration of a2 molecules is lower by a factor of 1000 than in standard a2/a2 homozygotes. In homozygous ali/ali individuals the a2 concentration varies with age--i.e., very low in young rabbits and higher in older ones--but it never reaches normal levels. The low level of a2 is compensated by increased amounts of a-negative molecules. Southern blot analysis did not reveal any gross changes in the intron between JH and C mu (joining region of immunoglobulin heavy chain and constant region of immunoglobulin mu chain) or in the number of VH gene segments encoding a locus specificities. We suggest that the ali phenotype is due to a mutation in a control element. Images PMID:3014517

The AID enzyme induces class switch recombination in fibroblasts.

PubMed

Okazaki, Il-mi; Kinoshita, Kazuo; Muramatsu, Masamichi; Yoshikawa, Kiyotsugu; Honjo, Tasuku

2002-03-21

The switch of the immunoglobulin isotype from IgM to IgG, IgE or IgA is mediated by class switch recombination (CSR). CSR changes the immunoglobulin heavy chain constant region (CH) gene from Cmu to one of the other CH genes. Somatic hypermutation introduces massive numbers of point mutations in the immunoglobulin variable (V) region gene, giving rise to immunoglobulin with higher affinity. Activation-induced cytidine deaminase (AID), a putative RNA-editing cytidine deaminase, is expressed strictly in activated B cells and is indispensable in both CSR and somatic hypermutation. But the exact function of AID is unknown. Here we show that ectopic expression of AID induces CSR in an artificial switch construct in fibroblasts at a level comparable to that in stimulated B cells. Sequences around recombination junctions in the artificial substrate have features similar to endogenous CSR junctions. Furthermore, AID-induced CSR in fibroblasts is dependent on transcription of the target S region, as shown in endogenous CSR in B cells. The results show that AID is the only B-cell-specific factor required for initiation of the CSR reaction in the activated locus.

The complementarity-determining region sequences in IgY antivenom hypervariable regions.

PubMed

da Rocha, David Gitirana; Fernandez, Jorge Hernandez; de Almeida, Claudia Maria Costa; da Silva, Claudia Letícia; Magnoli, Fabio Carlos; da Silva, Osmair Élder; da Silva, Wilmar Dias

2017-08-01

The data presented in this article are related to the research article entitled "Development of IgY antibodies against anti-snake toxins endowed with highly lethal neutralizing activity" (da Rocha et al., 2017) [1]. Complementarity-determining region (CDR) sequences are variable antibody (Ab) sequences that respond with specificity, duration and strength to identify and bind to antigen (Ag) epitopes. B lymphocytes isolated from hens immunized with Bitis arietans (Ba) and anti- Crotalus durissus terrificus (Cdt) venoms and expressing high specificity, affinity and toxicity neutralizing antibody titers were used as DNA sources. The VLF1, CDR1, CDR2, VLR1 and CDR3 sequences were validated by BLASTp, and values corresponding to IgY V L and V H anti-Ba or anti-Cdt venoms were identified, registered [ Gallus gallus IgY Fv Light chain (GU815099)/ Gallus gallus IgY Fv Heavy chain (GU815098)] and used for molecular modeling of IgY scFv anti-Ba. The resulting CDR1, CDR2 and CDR3 sequences were combined to construct the three - dimensional structure of the Ab paratope.

Chimeric Anti-Human Podoplanin Antibody NZ-12 of Lambda Light Chain Exerts Higher Antibody-Dependent Cellular Cytotoxicity and Complement-Dependent Cytotoxicity Compared with NZ-8 of Kappa Light Chain.

PubMed

Kaneko, Mika K; Abe, Shinji; Ogasawara, Satoshi; Fujii, Yuki; Yamada, Shinji; Murata, Takeshi; Uchida, Hiroaki; Tahara, Hideaki; Nishioka, Yasuhiko; Kato, Yukinari

2017-02-01

Podoplanin (PDPN), a type I transmembrane 36-kDa glycoprotein, is expressed not only in normal cells, such as renal epithelial cells (podocytes), lymphatic endothelial cells, and pulmonary type I alveolar cells, but also in cancer cells, including brain tumors and lung squamous cell carcinomas. Podoplanin activates platelet aggregation by binding to C-type lectin-like receptor-2 (CLEC-2) on platelets, and the podoplanin/CLEC-2 interaction facilitates blood/lymphatic vessel separation. We previously produced neutralizing anti-human podoplanin monoclonal antibody (mAb), clone NZ-1 (rat IgG 2a , lambda), which neutralizes the podoplanin/CLEC-2 interaction and inhibits platelet aggregation and cancer metastasis. Human-rat chimeric antibody, NZ-8, was previously developed using variable regions of NZ-1 and human constant regions of heavy chain (IgG 1 ) and light chain (kappa chain). Although NZ-8 showed high antibody-dependent cellular cytotoxicity (ADCC) and complement-dependent cytotoxicity (CDC) against human podoplanin-expressing cancer cells, the binding affinity of NZ-8 was lower than that of NZ-1. Herein, we produced a novel human-rat chimeric antibody, NZ-12, the constant regions of which consist of IgG 1 heavy chain and lambda light chain. Using flow cytometry, we demonstrated that the binding affinity of NZ-12 was much higher than that of NZ-8. Furthermore, ADCC and CDC activities of NZ-12 were significantly increased against glioblastoma cell lines (LN319 and D397) and lung cancer cell line (PC-10). These results suggested that NZ-12 could become a promising therapeutic antibody against podoplanin-expressing brain tumors and lung cancers.

Optimal heavy tail estimation - Part 1: Order selection

NASA Astrophysics Data System (ADS)

Mudelsee, Manfred; Bermejo, Miguel A.

2017-12-01

The tail probability, P, of the distribution of a variable is important for risk analysis of extremes. Many variables in complex geophysical systems show heavy tails, where P decreases with the value, x, of a variable as a power law with a characteristic exponent, α. Accurate estimation of α on the basis of data is currently hindered by the problem of the selection of the order, that is, the number of largest x values to utilize for the estimation. This paper presents a new, widely applicable, data-adaptive order selector, which is based on computer simulations and brute force search. It is the first in a set of papers on optimal heavy tail estimation. The new selector outperforms competitors in a Monte Carlo experiment, where simulated data are generated from stable distributions and AR(1) serial dependence. We calculate error bars for the estimated α by means of simulations. We illustrate the method on an artificial time series. We apply it to an observed, hydrological time series from the River Elbe and find an estimated characteristic exponent of 1.48 ± 0.13. This result indicates finite mean but infinite variance of the statistical distribution of river runoff.

The role of potential vorticity anomalies in the Somali Jet on Indian Summer Monsoon Intraseasonal Variability

NASA Astrophysics Data System (ADS)

Rai, P.; Joshi, M.; Dimri, A. P.; Turner, A. G.

2017-08-01

The climate of the Indian subcontinent is dominated by rainfall arising from the Indian summer monsoon (ISM) during June to September. Intraseasonal variability during the monsoon is characterized by periods of heavy rainfall interspersed by drier periods, known as active and break events respectively. Understanding and predicting such events is of vital importance for forecasting human impacts such as water resources. The Somali Jet is a key regional feature of the monsoon circulation. In the present study, we find that the spatial structure of Somali Jet potential vorticity (PV) anomalies varies considerably during active and break periods. Analysis of these anomalies shows a mechanism whereby sea surface temperature (SST) anomalies propagate north/northwestwards through the Arabian Sea, caused by a positive feedback loop joining anomalies in SST, convection, modification of PV by diabatic heating and mixing in the atmospheric boundary layer, wind-stress curl, and ocean upwelling processes. The feedback mechanism is consistent with observed variability in the coupled ocean-atmosphere system on timescales of approximately 20 days. This research suggests that better understanding and prediction of monsoon intraseasonal variability in the South Asian monsoon may be gained by analysis of the day-to-day dynamical evolution of PV in the Somali Jet.

The role of potential vorticity anomalies in the Somali Jet on Indian Summer Monsoon Intraseasonal Variability

NASA Astrophysics Data System (ADS)

Rai, P.; Joshi, M.; Dimri, A. P.; Turner, A. G.

2018-06-01

The climate of the Indian subcontinent is dominated by rainfall arising from the Indian summer monsoon (ISM) during June to September. Intraseasonal variability during the monsoon is characterized by periods of heavy rainfall interspersed by drier periods, known as active and break events respectively. Understanding and predicting such events is of vital importance for forecasting human impacts such as water resources. The Somali Jet is a key regional feature of the monsoon circulation. In the present study, we find that the spatial structure of Somali Jet potential vorticity (PV) anomalies varies considerably during active and break periods. Analysis of these anomalies shows a mechanism whereby sea surface temperature (SST) anomalies propagate north/northwestwards through the Arabian Sea, caused by a positive feedback loop joining anomalies in SST, convection, modification of PV by diabatic heating and mixing in the atmospheric boundary layer, wind-stress curl, and ocean upwelling processes. The feedback mechanism is consistent with observed variability in the coupled ocean-atmosphere system on timescales of approximately 20 days. This research suggests that better understanding and prediction of monsoon intraseasonal variability in the South Asian monsoon may be gained by analysis of the day-to-day dynamical evolution of PV in the Somali Jet.

Distribution and source analysis of heavy metal pollutants in sediments of a rapid developing urban river system.

PubMed

Xia, Fang; Qu, Liyin; Wang, Ting; Luo, Lili; Chen, Han; Dahlgren, Randy A; Zhang, Minghua; Mei, Kun; Huang, Hong

2018-09-01

Heavy metal pollution of aquatic environments in rapidly developing industrial regions is of considerable global concern due to its potential to cause serious harm to aquatic ecosystems and human health. This study assessed heavy metal contamination of sediments in a highly industrialized urban watershed of eastern China containing several historically unregulated manufacturing enterprises. Total concentrations and solid-phase fractionation of Cu, Zn, Pb, Cr and Cd were investigated for 39 river sediments using multivariate statistical analysis and geographically weighted regression (GWR) methods to quantitatively examine the relationship between land use and heavy metal pollution at the watershed scale. Results showed distinct spatial patterns of heavy metal contamination within the watershed, such as higher concentrations of Zn, Pb and Cd in the southwest and higher Cu concentration in the east, indicating links to specific pollution sources within the watershed. Correlation and PCA analyses revealed that Zn, Pb and Cd were dominantly contributed by anthropogenic activities; Cu originated from both industrial and agricultural sources; and Cr has been altered by recent pollution control strategies. The GWR model indicated that several heavy metal fractions were strongly correlated with industrial land proportion and this correlation varied with the level of industrialization as demonstrated by variations in local GWR R 2 values. This study provides important information for assessing heavy metal contaminated areas, identifying heavy metal pollutant sources, and developing regional-scale remediation strategies. Copyright © 2018 Elsevier Ltd. All rights reserved.

Molecular cloning and characterization of sea bass (Dicentrarchus labrax, L.) MHC class I heavy chain and β2-microglobulin.

PubMed

Pinto, Rute D; Randelli, Elisa; Buonocore, Francesco; Pereira, Pedro J B; dos Santos, Nuno M S

2013-03-01

In this work, the gene and cDNA of sea bass (Dicentrarchus labrax) β2-microglobulin (Dila-β2m) and several cDNAs of MHC class I heavy chain (Dila-UA) were characterized. While Dila-β2m is single-copy, numerous Dila-UA transcripts were identified per individual with variability at the peptide-binding domain (PBD), but also with unexpected diversity from the connective peptide (CP) through the 3' untranslated region (UTR). Phylogenetic analysis segregates Dila-β2m and Dila-UA into each subfamily cluster, placing them in the fish class and branching Dila-MHC-I with lineage U. The α1 domains resemble those of the recently proposed L1 trans-species lineage. Although no Dila-specific α1, α2 or α3 sub-lineages could be observed, two highly distinct sub-lineages were identified at the CP/TM/CYT regions. The three-dimensional homology model of sea bass MHC-I complex is consistent with other characterized vertebrate structures. Furthermore, basal tissue-specific expression profiles were determined for both molecules, and expression of β2m was evaluated after poly I:C stimulus. Results suggest these molecules are orthologues of other β2m and teleost classical MHC-I and their basic structure is evolutionarily conserved, providing relevant information for further studies on antigen presentation in this fish species. Copyright © 2012 Elsevier Ltd. All rights reserved.

Mapping the dominant regions of the phase space associated with c c ¯ production relevant for the prompt atmospheric neutrino flux

NASA Astrophysics Data System (ADS)

Goncalves, Victor P.; Maciuła, Rafał; Pasechnik, Roman; Szczurek, Antoni

2017-11-01

We present a detailed mapping of the dominant kinematical domains contributing to the prompt atmospheric neutrino flux at high neutrino energies by studying their sensitivity to the cuts on several kinematical variables crucial for charm production in cosmic ray scattering in the atmosphere. This includes the maximal center-of-mass energy for proton-proton scattering, the longitudinal momentum fractions of partons in the projectile (cosmic ray) and target (nucleus of the atmosphere), the Feynman xF variable, and the transverse momentum of charm quark/antiquark. We find that the production of neutrinos with energies larger than Eν>107 GeV is particularly sensitive to the c.m. energies larger than the ones at the LHC and to the longitudinal momentum fractions in the projectile 10-8

Measurements of heavy ions in the low-altitude regions of the outer zone

NASA Astrophysics Data System (ADS)

Blake, J. B.; Fennell, J. F.; Hovestadt, D.

1980-11-01

Measurements of heavy ions in the low-altitude outer zone are discussed. The data were acquired with a heavy-ion sensor aboard the S3-2 satellite in the time period between Dec. 24, 1975, and March 3, 1976. Mirroring fluxes of 370/sq/s/sr He ions and CNO ions were observed; thus, the CNO/He ratio was about 6.8 x 10 to the -5th. Equatorial measurements gave a much larger He/CNO ratio showing that magnetospheric processes strongly discriminate against populating the low-altitude regions with ions of increasing mass in the energy range of hundreds of keV. In addition, a comparison of the S3-2 data with those from Injun 5 acquired in Jan. 1969 in the same region of the magnetosphere indicated that the low-altitude CNO/He ratio is strongly time dependent.

The Study of Soil Protection in the System of the Cultivated Lands of Kemerovo Region

NASA Astrophysics Data System (ADS)

Yakovchenko, M. A.; Konstantinova, O. B.; Kosolapova, A. A.

2015-09-01

The heavy metal content in the surface soils is characterized with their ingress for the given period of time. The sources of heavy metals in the soil are precipitation, seeds, dust, organic and mineral fertilizers, and others. The paper studies the heavy metal content in the soils of the waste dumps of the open-pit coal mines.

Dual Approach To Superquantile Estimation And Applications To Density Fitting

DTIC Science & Technology

2016-06-01

incorporate additional constraints to improve the fidelity of density estimates in tail regions. We limit our investigation to data with heavy tails, where...samples of various heavy -tailed distributions. 14. SUBJECT TERMS probability density estimation, epi-splines, optimization, risk quantification...limit our investigation to data with heavy tails, where risk quantification is typically the most difficult. Demonstrations are provided in the form of

Potent Inhibition of Human Immunodeficiency Virus Type 1 Replication by an Intracellular Anti-Rev Single-Chain Antibody

NASA Astrophysics Data System (ADS)

Duan, Lingxun; Bagasra, Omar; Laughlin, Mark A.; Oakes, Joseph W.; Pomerantz, Roger J.

1994-05-01

Human immunodeficiency virus type 1 (HIV-1) has a complex life cycle, which has made it a difficult target for conventional therapeutic modalities. A single-chain antibody moiety, directed against the HIV-1 regulatory protein Rev, which rescues unspliced viral RNA from the nucleus of infected cells, has now been developed. This anti-Rev single-chain construct (SFv) consists of both light and heavy chain variable regions of an anti-Rev monoclonal antibody, which, when expressed intracellularly within human cells, potently inhibits HIV-1 replication. This intracellular SFv molecule is demonstrated to specifically antagonize Rev function. Thus, intracellular SFv expression, against a retroviral regulatory protein, may be useful as a gene therapeutic approach to combat HIV-1 infections.

Compact E x B mass separator for heavy ion beams.

PubMed

Wada, M; Hashino, T; Hirata, F; Kasuya, T; Sakamoto, Y; Nishiura, M

2008-02-01

A compact E x B mass separator that deflects beam by 30 degrees has been designed and built to prove its principle of operation. The main part of the separator is contained in a shielding box of 11 cm long, 9 cm wide, and 1.5 cm high. An electromagnet of 7 cm pole diameter produced variable magnetic field in the mass separation region instead of a couple of permanent magnets which is to be used in the final design. The experimental result agreed well with the theoretical prediction, and larger mass ions is bent with less magnetic field with the aid of the deflection electric field. The reduction in resolving power for mass separation due to the deflection electric field has been investigated experimentally.

Heavy metal pollution and health risk assessment in the Wei River in China.

PubMed

Yang, Xuefu; Duan, Jinming; Wang, Lei; Li, Wei; Guan, Jianling; Beecham, Simon; Mulcahy, Dennis

2015-03-01

From data collected monthly at 26 monitoring cross sections in the Wei River in the Shaanxi Region of China during the period 2008-2012, the temporal pollution characteristics of heavy metals (Hg, Cd, Cr(VI), Pb, and As) were analyzed based on a heavy metal pollution index (HPI). The monthly HPI values of the five heavy metals in the river fluctuated greatly in 2008 and then declined gradually with time. This general trend of reduction in HPI appears not to have a seasonal variation and most likely resulted from the continued improvement in heavy metal pollution control strategies implemented by local environmental agencies combined with a significant improvement in wastewater treatment capacities. Among the five heavy metals, Cd and Pb were below 0.1 and 3 μg L(-1), respectively, at all the sampling points in the studied areas in the year 2012. The detection rates of As, Hg, and Cr(VI) were in the order of Hg > Cr(VI) > As. Hg, Cr(VI), and As exceeded, in a month of the dry season in 2012, the standard limits for category III surface waters according to the China Environment Quality Standards for Surface Water (CEQSSW). Based on the assessment using the HPI method, the pollution status of these heavy metals in water of the Wei River in the Shaanxi Region was generally at an acceptable level, but exhibited distinctive characteristics between the main stream river and tributaries. Most of the tributaries were more seriously polluted than the main river. A health risk assessment was conducted based on the Human Health Risk Assessment (HHRA) method recommended by the United States Environmental Protection Agency (USEPA). Apart from As, the health risk for the five heavy metals in the region were at acceptable levels for drinking water sources (hazard quotient (HQ) < 1, carcinogenic risk (CR) ranged from 10(-4)-10(-6)) according to the Risk Assessment Guidance for Superfund (RAGS), USEPA. Arsenic was identified as the most important pollutant of concern among the five heavy metals; both its values of the HQ and CR indicated potentially adverse health risks for the local population.

Contribution of the upper river, the estuarine region, and the adjacent sea to the heavy metal pollution in the Yangtze Estuary.

PubMed

Yin, Su; Wu, Yuehan; Xu, Wei; Li, Yangyang; Shen, Zhenyao; Feng, Chenghong

2016-07-01

To determine whether the discharge control of heavy metals in the Yangtze River basin can significantly change the pollution level in the estuary, this study analyzed the sources (upper river, the estuarine region, and the adjacent sea) of ten heavy metals (As, Cd, Co, Cr, Cu, Hg, Ni, Pb, Sb, and Zn) in dissolved and particulate phases in the surface water of the estuary during wet, normal, and dry seasons. Metal sources inferred from section fluxes agree with those in statistical analysis methods. Heavy metal pollution in the surface water of Yangtze Estuary primarily depends on the sediment suspension and the wastewater discharge from estuary cities. Upper river only constitutes the main source of dissolved heavy metals during the wet season, while the estuarine region and the adjacent sea (especially the former) dominate the dissolved metal pollution in the normal and dry seasons. Particulate metals are mainly derived from sediment suspension in the estuary and the adjacent sea, and the contribution of the upper river can be neglected. Compared with the hydrologic seasons, flood-ebb tides exert a more obvious effect on the water flow directions in the estuary. Sediment suspension, not the upper river, significantly affects the suspended particulate matter concentration in the estuary. Copyright © 2016 Elsevier Ltd. All rights reserved.

Determination of Heavy Metals in Alpinia oxyphylla Miq. Collected from Different Cultivation Regions

PubMed Central

Fu, Yurong; Lai, Weiyong; Zhang, Junqing

2016-01-01

20 batches of Alpinia oxyphylla Miq. were collected from Yunnan, Guangdong, Guangxi, and Hainan province in China. The contents of heavy metals of As, Hg, Pb, Cd, and Cu were determined and compared. The results indicated that geographical source might be a major factor to influence the contents of heavy metals of arsenic (As), mercury (Hg), lead (Pb), cadmium (Cd), and copper (Cu) in Alpinia oxyphylla Miq. Compared to the criteria of heavy metals, the contents of As, Hg, Pb, and Cd in almost all the samples were in accordance with The Green Trade Standards. The contents of Cu were higher than the criteria for heavy metals except the samples from Changxing town, Qiongzhong county, Maoyang town, Qiongzhong county, Wupo town, Tunchang county, and Nanlv town, Tunchang county, in Hainan province. The best cultivation regions of Alpinia oxyphylla Miq. were from Changxing town, Qiongzhong county, Maoyang town, Qiongzhong county, Wupo town, Tunchang county, and Nanlv town, Tunchang county, in Hainan province. This research would provide the scientific basis for quality control and standardization of Alpinia oxyphylla Miq. PMID:27293963

Large-scale atmospheric conditions associated with heavy rainfall episodes in Southeast Brazil

NASA Astrophysics Data System (ADS)

Lima, Kellen Carla; Satyamurty, Prakki; Fernández, Júlio Pablo Reyes

2010-07-01

Heavy rainfall events in austral summer are responsible for almost all the natural disasters in Southeast Brazil. They are mostly associated with two types of atmospheric perturbations: Cold Front (53%) and the South Atlantic Convergence Zone (47%). The important question of what synoptic characteristics distinguish a heavy rainfall event (HRE) from a normal rainfall event (NRE) is addressed in this study. Here, the evolutions of such characteristics are identified through the anomalies with respect to climatology of the composite fields of atmospheric variables. The anomalies associated with HRE are significantly more intense than those associated with NRE in all fundamental atmospheric variables such as outgoing long-wave radiation, sea-level pressure, 500-hPa geopotential, lower and upper tropospheric winds. The moisture flux convergence over Southeast Brazil in the HRE composites is 60% larger than in the NRE composites. The energetics calculations for the HRE that occurred in the beginning of February 1988 strongly suggest that the barotropic instability played an important role in the intensification of the perturbation. These results, especially the intensities of the wind, pressure anomalies, and the moisture convergence are useful for the meteorologists of the Southeast Brazil for forecasting heavy precipitation.

An analysis of the loads applied to a heavy Space Station rack during translation and rotation tasks

NASA Technical Reports Server (NTRS)

Stoycos, Lara E.; Klute, Glenn K.

1994-01-01

To prepare for Space Station Alpha's on-orbit assembly, maintenance, and resupply, NASA requires information about the crew members' ability to move heavy masses on orbit. Ease of movement in microgravity and orbiter stay time constraints may change the Space Station equipment and outfitting design requirements. Therefore, the time and effort required to perform a particular task and how and where the forces and torque should be applied become critical in evaluating the design effort. Thus, the three main objectives of this investigation were to: (1) quantify variables such as force and torque as they relate to heavy mass handling techniques; (2) predict the time required to perform heavy mass handling tasks; and (3) note any differences between males and females in their ability to manipulate a heavy mass.

Immunoglobulin heavy chain diversity in Pteropid bats: evidence for a diverse and highly specific antigen binding repertoire

PubMed Central

Tachedjian, Mary; Wang, Lin-Fa

2010-01-01

Bats are the natural host reservoir for range of emerging and re-emerging viruses, many of which cause significant morbidity and mortality in other mammals, yet appear to result in no clinical consequences for bats. The ability of bats to coexist with a variety of viruses presents an interesting immunological problem that has not been examined in any detail but which could provide significant insights into the evolution of antiviral mechanisms in mammals. Towards a better understanding of the bat immune system, we analysed the expressed heavy chain variable (VH) regions of antibodies from the black flying fox, Pteropus alecto. The germline repertoire of the closely related Pteropid bat, Pteropus vampyrus, whose genome has been sequenced was also examined for comparative purposes. Representative VH genes were found in all three mammalian VH clans (I, II and III) in both the expressed P. alecto VH repertoire and the germline P. vampyrus VH repertoire. Evidence for the use of multiple heavy chain diversity (DH) and joining (JH) segments for the generation of diverse VDJ rearrangements was also present in the expressed antibody repertoire of P. alecto. The long period of co-evolutionary history of bats with viruses may have resulted in a variety of highly specific VH segments being hardwired into the genomes of bats and may have implications for their ability to successfully cope with a diversity of viral antigens. PMID:20162414

Cytotoxicity and genotoxicity of Guaribas river water (Piauí, Brazil), influenced by anthropogenic action.

PubMed

de Castro E Sousa, João Marcelo; Peron, Ana Paula; da Silva E Sousa, Louridânya; de Moura Holanda, Mércia; de Macedo Vieira Lima, Ataíde; de Oliveira, Vitor Alves; da Silva, Felipe Cavalcanti Carneiro; de Morais Lima, Leonardo Henrique Guedes; Matos, Leomá Albuquerque; de Moura Dantas, Sandra Maria Mendes; de Aguiar, Raí Pablo Sousa; Islam, Muhammad Torequl; de Carvalho Melo-Cavalcante, Ana Amélia; Bonecker, Cláudia Costa; Junior, Horácio Ferreira Júlio

2017-06-01

In general, tropical rivers have a great impact on human activities. Bioaccumulation of toxins is a worldwide problem nowadays and has been, historically, overlooked by the supervisory authorities. This study evaluated cytogenotoxic effects of Guaribas river (a Brazilian river) water during dry and rainy seasons of 2014 by using the Allium cepa test system. The toxicogenetic variables, including root growth, mitotic index, and chromosomal aberrations, were analyzed in meristematic cells of A. cepa exposed to water samples taken from the up-, within, and downstream of the city Picos (state: Piauí). The physical-chemical parameters were also analyzed to explain water quality and possible anthropogenic action. Additionally, the presence of heavy metals was also analyzed to explain water quality and possible damaging effects on eukaryotic cells. The results suggest that the river water exerted cytotoxic, mutagenic, and genotoxic effects, regardless of the seasons. In addition, Guaribas river presented physico-chemical values outside the Brazilian laws, which can be a characteristic of human pollution (domestic sewage, industrial, and local agriculture). The genetic damage was positively correlated with higher levels of heavy metals. The pollution of the Guaribas river water may link to the chemical contamination, including the action of heavy metals and their impacts on genetic instability in the aquatic ecosystem. In conclusion, necessary steps should be taken into account for further toxicogenetic studies of the Guaribas river water, as it has an influence in human health of the same region of Brazil.

Detection of Metallothionein in Javanese Medaka (Oryzias javanicus), Using a scFv-Immobilized Protein Chip

PubMed Central

Lee, Euiyeon; Jeon, Hyunjin; Kang, Chungwon; Woo, Seonock; Yum, Seungshic; Kwon, Youngeun

2018-01-01

Environmental pollution by various industrial chemicals and biological agents poses serious risks to human health. Especially, marine contamination by potentially toxic elements (PTEs) has become a global concern in recent years. Many efforts have been undertaken to monitor the PTE contamination of the aquatic environment. However, there are few approaches available to assess the PTE exposure of aquatic organisms. In this research, we developed a strategy to evaluate the heavy metal exposure of marine organisms, by measuring the expression levels of metallothionein protein derived from Oryzias javanicus (OjaMT). OjaMT is a biomarker of heavy metal exposure because the expression level increases upon heavy metal exposure. The developed assay is based on a real-time, label-free surface plasmon resonance (SPR) measurement. Anti-OjaMT antibody and anti-OjaMT single-chain fragment of variable region (scFv) were used as detection probes. Two types of SPR sensor chips were fabricated, by immobilizing antibody or Cys3-tagged scFv (scFv-Cys3) in a controlled orientation and were tested for in situ label-free OjaMT detection. Compared to the antibody-presenting sensor chips, the scFv-presenting sensor chips showed improved performance, displaying enhanced sensitivity and enabling semi-quantitative detection. The portable SPR system combined with scFv-immobilized sensor chips is expected to provide an excellent point-of-care testing system that can monitor target biomarkers in real time. PMID:29614840

[History of heavy metal pollution from tidal flat in Haizhou Bay].

PubMed

Zhang, Rui; Zhang, Fan; Liu, Fu-Cheng; Yin, Fu-Jun; Ding, Ying-Jun; Gao, Jin-Rong; Chen, Jing; Shao, Wei

2013-03-01

Coastal zone could be considered as an important sink of regional source to sink and preserve historical records of environmental evolution. Four sediment cores, collected from tidal flat at Haizhou Bay near Lianyungang City, were examined for concentrations of heavy metals including Cd, Cr, Cu, Mn, Pb and Zn in core sediments to investigate the historical input of trace metals. In addition, sediment rates of cores LH3 and LH4 were determined based on radionuclide 210Pb. The results showed that grain size control effect was not the main factor that influenced the distribution of heavy metals. Heavy metals concentrations in the surface sediments were higher than these regional background values. Furthermore, Al element as a proxy of grain size was selected for normalization and calculation of metal enrichment factor (EF) and anthropogenic heavy metal fluxes. The results revealed that heavy metals in tidal flats were continuously enriched in the past decades, meanwhile, tidal flats have been significantly subjected to contaminations due to anthropogenic activities. Moreover, the depth profiles of heavy metals fluxes correspond to scenario of social-economy development of Lianyungang, which is an important urban area near Haizhou Bay. From 1950s to 2005, anthropogenic fluxes of metals increased with fluctuations, whereas, since 2005 anthropogenic fluxes declined, which may be correlated to the adjustment of industrial structure as well as the strengthened environmental regulation.

Heavy metals and polychlorinated biphenyls (PCBs) sedimentation in the Lianhua Mountain Reservoir, Pearl River Delta, China.

PubMed

Huang, Jingyu; Amuzu-Sefordzi, Basil; Li, Ming

2015-05-01

The Pearl River Delta is one of the biggest electronics manufacturing regions in the world. Due to the presence of abandoned industrial sites and the proliferation of large-scale electronics companies in the past four decades, it is therefore imperative to investigate the extent of heavy metals and polychlorinated biphenyls (PCBs) contamination in the region. Spatial and temporal distribution of heavy metals (Cr, Cu, Ni, Pb, and Zn) and PCBs (PCB28, PCB52, PCB101, PCB118, PCB138, PCB153, and PCB180) in the Lianhua Mountain reservoir in the Pearl River Delta, Dongguan City, China were examined based on a sedimentary profile analysis. Higher concentrations of the heavy metals detected were recorded in bottom sediments whereas 70% of the detected PCBs recorded maximum concentrations in top sediments. The geo-accumulation indices (Igeo) indicate that the study area is uncontaminated to moderately contaminated. Also, the integrated pollution indices (IPI) were above 1, except Pb, which shows that the study area is contaminated with heavy metals from anthropogenic sources. The concentrations of individual heavy metals and PCBs over a period of 60 years were also analyzed in order to establish a historical trend of pollution in the study area. This study provides baseline information on the level and historical trend of heavy metals and PCBs pollution in the study area.

A cDNA Immunization Strategy to Generate Nanobodies against Membrane Proteins in Native Conformation

PubMed Central

Eden, Thomas; Menzel, Stephan; Wesolowski, Janusz; Bergmann, Philine; Nissen, Marion; Dubberke, Gudrun; Seyfried, Fabienne; Albrecht, Birte; Haag, Friedrich; Koch-Nolte, Friedrich

2018-01-01

Nanobodies (Nbs) are soluble, versatile, single-domain binding modules derived from the VHH variable domain of heavy-chain antibodies naturally occurring in camelids. Nbs hold huge promise as novel therapeutic biologics. Membrane proteins are among the most interesting targets for therapeutic Nbs because they are accessible to systemically injected biologics. In order to be effective, therapeutic Nbs must recognize their target membrane protein in native conformation. However, raising Nbs against membrane proteins in native conformation can pose a formidable challenge since membrane proteins typically contain one or more hydrophobic transmembrane regions and, therefore, are difficult to purify in native conformation. Here, we describe a highly efficient genetic immunization strategy that circumvents these difficulties by driving expression of the target membrane protein in native conformation by cells of the immunized camelid. The strategy encompasses ballistic transfection of skin cells with cDNA expression plasmids encoding one or more orthologs of the membrane protein of interest and, optionally, other costimulatory proteins. The plasmid is coated onto 1 µm gold particles that are then injected into the shaved and depilated skin of the camelid. A gene gun delivers a helium pulse that accelerates the DNA-coated particles to a velocity sufficient to penetrate through multiple layers of cells in the skin. This results in the exposure of the extracellular domains of the membrane protein on the cell surface of transfected cells. Repeated immunization drives somatic hypermutation and affinity maturation of target-specific heavy-chain antibodies. The VHH/Nb coding region is PCR-amplified from B cells obtained from peripheral blood or a lymph node biopsy. Specific Nbs are selected by phage display or by screening of Nb-based heavy-chain antibodies expressed as secretory proteins in transfected HEK cells. Using this strategy, we have successfully generated agonistic and antagonistic Nbs against several cell surface ecto-enzymes and ligand-gated ion channels. PMID:29410663

The influence of religious affiliation on heavy drinking, heavy smoking and heavy betel nut chewing.

PubMed

Chen, Chiang-Ming

2014-01-01

The results of a national survey of determinants of drinking, smoking and betel-nut chewing behaviors are analyzed. The purpose of this paper is to empirically investigate whether drinking, smoking and betel-nut chewing are influenced by a variety of religions based on Taiwan data. Our results suggest that Buddhism, Taoism and practitioners of Chinese folk region are positively associated with heavy betel nut chewing while the religion effects on heavy smoking and drinking are statistically insignificant. Our findings on religion effects in Taiwan can be a valuable reference for comparison in Christian and western countries. © 2013 Elsevier Ltd. All rights reserved.

Cloud types and the tropical Earth radiation budget, revised

NASA Technical Reports Server (NTRS)

Dhuria, Harbans L.; Kyle, H. Lee

1989-01-01

Nimbus-7 cloud and Earth radiation budget data are compared in a study of the effects of clouds on the tropical radiation budget. The data consist of daily averages over fixed 500 sq km target areas, and the months of July 1979 and January 1980 were chosen to show the effect of seasonal changes. Six climate regions, consisting of 14 to 24 target areas each, were picked for intensive analysis because they exemplified the range in the tropical cloud/net radiation interactions. The normal analysis was to consider net radiation as the independent variable and examine how cloud cover, cloud type, albedo and emitted radiation varied with the net radiation. Two recurring themes keep repeating on a local, regional, and zonal basis: the net radiation is strongly influenced by the average cloud type and amount present, but most net radiation values could be produced by several combinations of cloud types and amount. The regions of highest net radiation (greater than 125 W/sq m) tend to have medium to heavy cloud cover. In these cases, thin medium altitude clouds predominate. Their cloud tops are normally too warm to be classified as cirrus by the Nimbus cloud algorithm. A common feature in the tropical oceans are large regions where the total regional cloud cover varies from 20 to 90 percent, but with little regional difference in the net radiation. The monsoon and rain areas are high net radiation regions.

Sequence-Based Discovery Demonstrates That Fixed Light Chain Human Transgenic Rats Produce a Diverse Repertoire of Antigen-Specific Antibodies.

PubMed

Harris, Katherine E; Aldred, Shelley Force; Davison, Laura M; Ogana, Heather Anne N; Boudreau, Andrew; Brüggemann, Marianne; Osborn, Michael; Ma, Biao; Buelow, Benjamin; Clarke, Starlynn C; Dang, Kevin H; Iyer, Suhasini; Jorgensen, Brett; Pham, Duy T; Pratap, Payal P; Rangaswamy, Udaya S; Schellenberger, Ute; van Schooten, Wim C; Ugamraj, Harshad S; Vafa, Omid; Buelow, Roland; Trinklein, Nathan D

2018-01-01

We created a novel transgenic rat that expresses human antibodies comprising a diverse repertoire of heavy chains with a single common rearranged kappa light chain (IgKV3-15-JK1). This fixed light chain animal, called OmniFlic, presents a unique system for human therapeutic antibody discovery and a model to study heavy chain repertoire diversity in the context of a constant light chain. The purpose of this study was to analyze heavy chain variable gene usage, clonotype diversity, and to describe the sequence characteristics of antigen-specific monoclonal antibodies (mAbs) isolated from immunized OmniFlic animals. Using next-generation sequencing antibody repertoire analysis, we measured heavy chain variable gene usage and the diversity of clonotypes present in the lymph node germinal centers of 75 OmniFlic rats immunized with 9 different protein antigens. Furthermore, we expressed 2,560 unique heavy chain sequences sampled from a diverse set of clonotypes as fixed light chain antibody proteins and measured their binding to antigen by ELISA. Finally, we measured patterns and overall levels of somatic hypermutation in the full B-cell repertoire and in the 2,560 mAbs tested for binding. The results demonstrate that OmniFlic animals produce an abundance of antigen-specific antibodies with heavy chain clonotype diversity that is similar to what has been described with unrestricted light chain use in mammals. In addition, we show that sequence-based discovery is a highly effective and efficient way to identify a large number of diverse monoclonal antibodies to a protein target of interest.

Identifying controlling factors of ground-level ozone levels over southwestern Taiwan using a decision tree

NASA Astrophysics Data System (ADS)

Chu, Hone-Jay; Lin, Chuan-Yao; Liau, Churn-Jung; Kuo, Yi-Ming

2012-12-01

Kaohsiung City and the suburban region of southwestern Taiwan have suffered from severe air pollution since becoming the largest center of heavy industry in Taiwan. The complex process of ozone (O3) formation and its precursor compounds (the volatile organic compounds (VOCs) and nitrogen oxide (NOx) emissions), accompanied by meteorological conditions, make controlling ozone difficult. Using a decision tree is especially appropriate for analyzing time series data that contain ozone levels and meteorological and explanatory variables for ozone formation. Results show that dominant variables such as temperature, wind speed, VOCs, and NOx can play vital roles in describing ozone variations among observations. That temperature and wind speed are highly correlated with ozone levels indicates that these meteorological conditions largely affect ozone variability. The results also demonstrate that spatial heterogeneity of ozone patterns are in coastal and inland areas caused by sea-land breeze and pollutant sources during high ozone episodes over southwestern Taiwan. This study used a decision tree to obtain quantitative insight into spatial distributions of precursor compound emissions and effects of meteorological conditions on ozone levels that are useful for refining monitoring plans and developing management strategies.

Mitigation of reversible self-association and viscosity in a human IgG1 monoclonal antibody by rational, structure-guided Fv engineering

PubMed Central

Geoghegan, James C.; Fleming, Ryan; Damschroder, Melissa; Bishop, Steven M.; Sathish, Hasige A.; Esfandiary, Reza

2016-01-01

ABSTRACT Undesired solution behaviors such as reversible self-association (RSA), high viscosity, and liquid-liquid phase separation can introduce substantial challenges during development of monoclonal antibody formulations. Although a global mechanistic understanding of RSA (i.e., native and reversible protein-protein interactions) is sufficient to develop robust formulation controls, its mitigation via protein engineering requires knowledge of the sites of protein-protein interactions. In the study reported here, we coupled our previous hydrogen-deuterium exchange mass spectrometry findings with structural modeling and in vitro screening to identify the residues responsible for RSA of a model IgG1 monoclonal antibody (mAb-C), and rationally engineered variants with improved solution properties (i.e., reduced RSA and viscosity). Our data show that mutation of either solvent-exposed aromatic residues within the heavy and light chain variable regions or buried residues within the heavy chain/light chain interface can significantly mitigate RSA and viscosity by reducing the IgG's surface hydrophobicity. The engineering strategy described here highlights the utility of integrating complementary experimental and in silico methods to identify mutations that can improve developability, in particular, high concentration solution properties, of candidate therapeutic antibodies. PMID:27050875

A mutagenesis study of a catalytic antibody

DOE Office of Scientific and Technical Information (OSTI.GOV)

Jackson, D.Y.; Prudent, J.R.; Baldwin, E.P.

1991-01-01

The authors have generated seven site-specific mutations in the genes encoding the variable region of the heavy chain domain (V{sub H}) of the phosphocholine-binding antibody S107.S107 is a member of a family of well-characterized highly homologous antibodies that bind phosphorylcholine mono- and diesters. Two of these antibodies, MOPC-167 and T15, have previously been shown to catalyze the hydrolysis of 4-nitrophenyl N-trimethylammonioethyl carbonate. Two conserved heavy-chain residues, Tyr-33 and Arg-52, were postulated to be involved in binding and hydrolysis of 4-nitrophenylcholine carbonate esters. To more precisely define the catalytic roles of these residues, three Arg-52 mutants (R52K, R52Q, R52C) and fourmore » Tyr-33 mutants (Y33H, Y33F, Y33E, Y33D) of antibody S107 were generated. The genes encoding the V{sub H} binding domain of S107 were inserted into plasmid pUC-fl, and in vitro mutagenesis was performed. These results not only demonstrate the importance of electrostatic interactions in catalysis by antibody S107 but also show that catalytic side chains can be introduced into antibodies to enhance their catalytic efficiency.« less

A molecular model for cocaine binding by the immunotherapeutic human/mouse chimeric monoclonal antibody 2E2.

PubMed

Lape, Michael; Paula, Stefan; Ball, William J

2010-06-01

Immunotherapy by cocaine-binding monoclonal antibodies (mAbs) has emerged as a promising strategy for the treatment of cocaine addiction. The human (gamma1 heavy chain)/murine (lambda light chain) chimeric mAb 2E2 has excellent affinity and specificity for cocaine and recent animal studies have demonstrated 2E2's ability in vivo to reduce cocaine levels in the brain as well as alter cocaine self-administration behavior in rats. In this study, we used mAb 2E2 amino acid sequence information to create a homology model for the 3-D structure of its Fv fragment. Subsequent computational docking studies revealed the intermolecular interactions potentially responsible for mAb 2E2's cocaine binding properties. The driving force of cocaine binding was identified as a combination of hydrophobic interactions and a single hydrogen bond between a light chain tyrosine residue and a carbonyl oxygen atom of cocaine. The model also allowed for an in silico evaluation of single/double residue mutations in the heavy and light chain variable regions that might further enhance mAb 2E2's cocaine binding properties. Copyright (c) 2010 Elsevier Masson SAS. All rights reserved.

A Molecular Model for Cocaine Binding by the Immunotherapeutic Human/Mouse Chimeric Monoclonal Antibody 2E2

PubMed Central

Lape, Michael; Paula, Stefan; Ball, William J.

2010-01-01

Immunotherapy by cocaine-binding monoclonal antibodies (mAbs) has emerged as a promising strategy for the treatment of cocaine addiction. The human (γ1 heavy chain)/murine (λ light chain) chimeric mAb 2E2 has excellent affinity and specificity for cocaine and recent animal studies have demonstrated 2E2’s ability in vivo to reduce cocaine levels in the brain as well as alter cocaine self-administration behavior in rats. In this study, we used mAb 2E2 amino acid sequence information to create a homology model for the 3-D structure of its Fv fragment. Subsequent computational docking studies revealed the intermolecular interactions potentially responsible for mAb 2E2’s cocaine binding properties. The driving force of cocaine binding was identified as a combination of hydrophobic interactions and a single hydrogen bond between a light chain tyrosine residue and a carbonyl oxygen atom of cocaine. The model also allowed for an in silico evaluation of single/double residue mutations in the heavy and light chain variable regions that might further enhance mAb 2E2’s cocaine binding properties. PMID:20185210

When monoclonal antibodies are not monospecific: Hybridomas frequently express additional functional variable regions

PubMed Central

Bradbury, Andrew R. M.; Trinklein, Nathan D.; Wilkinson, Ian C.; Tandon, Atul K.; Anderson, Stephen; Bladen, Catherine L.; Jones, Brittany; Aldred, Shelley Force; Bestagno, Marco; Burrone, Oscar; Maynard, Jennifer; Ferrara, Fortunato; Görnemann, Janina; Glanville, Jacob; Wolf, Philipp; Frenzel, Andre; Wong, Julin; Koh, Xin Yu; Eng, Hui-Yan; Lane, David; Lefranc, Marie-Paule; Clark, Mike

2018-01-01

ABSTRACT Monoclonal antibodies are commonly assumed to be monospecific, but anecdotal studies have reported genetic diversity in antibody heavy chain and light chain genes found within individual hybridomas. As the prevalence of such diversity has never been explored, we analyzed 185 random hybridomas, in a large multicenter dataset. The hybridomas analyzed were not biased towards those with cloning difficulties or known to have additional chains. Of the hybridomas we evaluated, 126 (68.1%) contained no additional productive chains, while the remaining 59 (31.9%) contained one or more additional productive heavy or light chains. The expression of additional chains degraded properties of the antibodies, including specificity, binding signal and/or signal-to-noise ratio, as determined by enzyme-linked immunosorbent assay and immunohistochemistry. The most abundant mRNA transcripts found in a hybridoma cell line did not necessarily encode the antibody chains providing the correct specificity. Consequently, when cloning antibody genes, functional validation of all possible VH and VL combinations is required to identify those with the highest affinity and lowest cross-reactivity. These findings, reflecting the current state of hybridomas used in research, reiterate the importance of using sequence-defined recombinant antibodies for research or diagnostic use. PMID:29485921

Variable-speed, portable routing skate

NASA Technical Reports Server (NTRS)

Pesch, W. A.

1967-01-01

Lightweight, portable, variable-speed routing skate is used on heavy metal subassemblies which are impractical to move to a stationary machine. The assembly, consisting of the housing with rollers, router, and driving mechanism with transmission, weighs about forty pounds. Both speed and depth of cut are adjustable.

Cognitive factors contributing to spelling performance in children with prenatal alcohol exposure.

PubMed

Glass, Leila; Graham, Diana M; Akshoomoff, Natacha; Mattson, Sarah N

2015-11-01

Heavy prenatal alcohol exposure is associated with impaired school functioning. Spelling performance has not been comprehensively evaluated. We examined whether children with heavy prenatal alcohol exposure demonstrate deficits in spelling and related abilities, including reading, and tested whether there are unique underlying mechanisms for observed deficits in this population. Ninety-six school-age children made up 2 groups: children with heavy prenatal alcohol exposure (AE, n = 49) and control children (CON, n = 47). Children completed select subtests from the Wechsler Individual Achievement Test-Second Edition and the NEPSY-II. Group differences and relations between spelling and theoretically related cognitive variables were evaluated using multivariate analysis of variance and Pearson correlations. Hierarchical regression analyses were used to assess contributions of group membership and cognitive variables to spelling performance. The specificity of these deficits and underlying mechanisms was tested by examining the relations between reading ability, group membership, and cognitive variables. Groups differed significantly on all variables. Group membership and phonological processing significantly contributed to spelling performance, whereas for reading, group membership and all cognitive variables contributed significantly. For both reading and spelling, group × working memory interactions revealed that working memory contributed independently only for alcohol-exposed children. Alcohol-exposed children demonstrated a unique pattern of spelling deficits. The relation of working memory to spelling and reading was specific to the AE group, suggesting that if prenatal alcohol exposure is known or suspected, working memory ability should be considered in the development and implementation of explicit instruction. (c) 2015 APA, all rights reserved).

Cognitive Factors Contributing to Spelling Performance in Children with Prenatal Alcohol Exposure

PubMed Central

Glass, Leila; Graham, Diana M.; Akshoomoff, Natacha; Mattson, Sarah N.

2015-01-01

Objective Heavy prenatal alcohol exposure is associated with impaired school functioning. Spelling performance has not been comprehensively evaluated. We examined whether children with heavy prenatal alcohol exposure demonstrate deficits in spelling and related abilities, including reading, and tested whether there are unique underlying mechanisms for observed deficits in this population. Method Ninety-six school-age children comprised two groups: children with heavy prenatal alcohol exposure (AE, n=49) and control children (CON, n=47). Children completed select subtests from the WIAT-II and NEPSY-II. Group differences and relations between spelling and theoretically-related cognitive variables were evaluated using MANOVA and Pearson correlations. Hierarchical regression analyses were utilized to assess contributions of group membership and cognitive variables to spelling performance. The specificity of these deficits and underlying mechanisms was tested by examining the relations between reading ability, group membership, and cognitive variables. Results Groups differed significantly on all variables. Group membership and phonological processing significantly contributed to spelling performance. In addition, a significant group*working memory interaction revealed that working memory independently contributed significantly to spelling only for the AE group. All cognitive variables contributed to reading across groups and a group*working memory interaction revealed that working memory contributed independently to reading only for alcohol-exposed children. Conclusion Alcohol-exposed children demonstrated a unique pattern of spelling deficits. The relation of working memory to spelling and reading was specific to the AE group, suggesting that if prenatal alcohol exposure is known or suspected, working memory ability should be considered in the development and implementation of explicit instruction. PMID:25643217

Health risk assessment of heavy metals via dietary intake of five pistachio (Pistacia vera L.) cultivars collected from different geographical sites of Iran.

PubMed

Taghizadeh, Seyedeh Faezeh; Davarynejad, Gholamhossein; Asili, Javad; Nemati, Seyed Hossein; Rezaee, Ramin; Goumenou, Marina; Tsatsakis, Aristides M; Karimi, Gholamreza

2017-09-01

Pistachio is an important horticultural product and Iran is considered as a main pistachio producing country. Assessment of heavy metals in this export fruit is crucial for protecting public health against toxic heavy metals. The concentration of selected heavy metals in soil, water and five pistachio cultivars from four geographical regions of Iran were measured. Although none of the elements were detected in water irrigation, infield metal content in the soil had good correlation with that of pistachio. The highest amounts of Al, As, Co, Ni and Se were reported in samples collected from Sarakhs, Iran. Considering both cultivar and region effects on selected heavy metals concentration, Kaleghoochi cultivar from Sarakhs site showed the highest amount of Al, As, Ni and Se. The maximum concentration of Hg was found in Akbari cultivar collected from Damghan. In the Akbari and the Ahmad aghaei cultivars collected from Sarakhs and Damghan cultivation zones, respectively, the highest amount of Co were observed. Based on our results, the HI value for the consumers of Iranian pistachio was 0.066. It seems that the levels of heavy metals in these pistachio samples pose no risk to consumers. Copyright © 2017 Elsevier Ltd. All rights reserved.

Environmental risk assessment of radioactivity and heavy metals in soil of Toplica region, South Serbia.

PubMed

Stevanović, Vladica; Gulan, Ljiljana; Milenković, Biljana; Valjarević, Aleksandar; Zeremski, Tijana; Penjišević, Ivana

2018-03-13

Activity levels of natural and artificial radionuclides and content of ten heavy metals (As, Cd, Co, Cr, Cu, Mn, Ni, Pb, Zn and Hg) were investigated in 41 soil samples collected from Toplica region located in the south part of Serbia. Radioactivity was determined by gamma spectrometry using HPGe detector. The obtained mean activity concentrations ± standard deviations of radionuclides 226 Ra, 232 Th, 40 K and 137 Cs were 29.9 ± 9.4, 36.6 ± 11.5, 492 ± 181 and 13.4 ± 18.7 Bq kg -1 , respectively. According to Shapiro-Wilk normality test, activity concentrations of 226 Ra and 232 Th were consistent with normal distribution. External exposure from radioactivity was estimated through dose and radiation risk assessments. Concentrations of heavy metals were measured by using ICP-OES, and their health risks were then determined. Enrichment by heavy metals and pollution level in soils were evaluated using the enrichment factor, the geoaccumulation index (I geo ), pollution index and pollution load index. Based on GIS approach, the spatial distribution maps of radionuclides and heavy metal contents were made. Spearman correlation coefficient was used for correlation analysis between radionuclide activity concentrations and heavy metal contents.

Monte-Carlo Simulations of Heavy Ions Track Structures and Applications

NASA Technical Reports Server (NTRS)

Plante, Ianik; Cucinotta, Francia A.

2013-01-01

In space, astronauts are exposed to protons, high ]energy heavy (HZE) ions that have a high charge (Z) and energy (E), and secondary radiation, including neutrons and recoil nuclei produced by nuclear reactions in spacecraft walls or in tissue. The astronauts can only be partly shielded from these particles. Therefore, on travelling to Mars, it is estimated that every cell nucleus in an astronaut fs body would be hit by a proton or secondary electron (e.g., electrons of the target atoms ionized by the HZE ion) every few days and by an HZE ion about once a month. The risks related to these heavy ions are not well known and of concern for long duration space exploration missions. Medical ion therapy is another situation where human beings can be irradiated by heavy ions, usually to treat cancer. Heavy ions have a peculiar track structure characterized by high levels of energy ]deposition clustering, especially in near the track ends in the so ]called eBragg peak f region. In radiotherapy, these features of heavy ions can provide an improved dose conformation with respect to photons, also considering that the relative biological effectiveness (RBE) of therapeutic ions in the plateau region before the peak is sufficiently low. Therefore, several proton and carbon ion therapy facilities are under construction at this moment

Heavy metal speciation and risk assessment in dry land and paddy soils near mining areas at Southern China.

PubMed

Liu, Guannan; Wang, Juan; Zhang, Erxi; Hou, Jing; Liu, Xinhui

2016-05-01

Heavy metal contamination of soils has been a long-standing environmental problem in many parts of the world, and poses enormous threats to ecosystem and human health. Speciation of heavy metals in soils is crucial to assessing environmental risks from contaminated soils. In this study, total concentrations and speciation of As, Cd, Cr, Cu, Mn, Ni, Pb, and Zn were measured for agricultural soils near mines along the Diaojiang River in Guangxi Zhuang Autonomy Region, China. The sources of heavy metals in soils also were identified to assess their effect on speciation distribution of soil heavy metals. Furthermore, the speciation distribution of Cd and Zn, main soil heavy metal pollutants, in dry land and paddy soils were compared. Results showed that there were two severely polluted regions near mine area reaching alarming pollution level. As, Cd, Pb, and Zn were more affected by mining activities, showing very strong pollution level in soils. The mean percentage of exchangeable and carbonate fraction was highest and up to 46.8 % for Cd, indicating a high environmental risk. Greater bioavailable fractions of As, Cd, Cu, Mn, Pb, and Zn were found in soils heavily polluted by mining activities, whereas Cr and Ni as geogenic elements in the stable residual fraction. In addition, in the dry land soils, reducible fraction proportion of Cd was higher than that in the paddy soils, whereas exchangeable and carbonate fraction of Cd was lower than that in the paddy soils. Oxidizable fraction of Zn was higher in the paddy soils than that in the dry land soils. The results indicate that the sources of soil heavy metals and land types affect heavy metal speciation in the soil and are significant for environmental risk assessment of soil heavy metal pollutions.

Parenting style, religiosity, peer alcohol use, and adolescent heavy drinking.

PubMed

Hoffmann, John P; Bahr, Stephen J

2014-03-01

The purpose of this research was to examine the associations of parenting style, religiosity, and peer alcohol use with alcohol use and heavy drinking. Structural equation modeling was used to estimate direct and indirect associations among 5,419 adolescents ages 12-14 years from the National Longitudinal Study of Youth 1997. Adolescents whose parents were authoritative were less likely to drink heavily than adolescents who experienced neglectful or indulgent parenting styles. Religiosity was negatively associated with heavy drinking after other relevant variables were controlled for. Authoritative parenting appears to have both direct and indirect negative associations with the risk of heavy drinking among adolescents. Authoritative parenting, where monitoring and support are above average, and religiosity might help deter adolescents from heavy drinking, even when adolescents experience peer environments where alcohol use is common. Authoritarian parenting, although it was not associated with heavy drinking, was positively associated with alcohol use and peer alcohol use, thus placing adolescents at some risk.

An anti-hapten camelid antibody reveals a cryptic binding site with significant energetic contributions from a nonhypervariable loop

DOE Office of Scientific and Technical Information (OSTI.GOV)

Fanning, Sean W.; Horn, James R.

2014-03-05

Conventional anti-hapten antibodies typically bind low-molecular weight compounds (haptens) in the crevice between the variable heavy and light chains. Conversely, heavy chain-only camelid antibodies, which lack a light chain, must rely entirely on a single variable domain to recognize haptens. While several anti-hapten VHHs have been generated, little is known regarding the underlying structural and thermodynamic basis for hapten recognition. Here, an anti-methotrexate VHH (anti-MTX VHH) was generated using grafting methods whereby the three complementarity determining regions (CDRs) were inserted onto an existing VHH framework. Thermodynamic analysis of the anti-MTX VHH CDR1-3 Graft revealed a micromolar binding affinity, while themore » crystal structure of the complex revealed a somewhat surprising noncanonical binding site which involved MTX tunneling under the CDR1 loop. Due to the close proximity of MTX to CDR4, a nonhypervariable loop, the CDR4 loop sequence was subsequently introduced into the CDR1-3 graft, which resulted in a dramatic 1000-fold increase in the binding affinity. Crystal structure analysis of both the free and complex anti-MTX CDR1-4 graft revealed CDR4 plays a significant role in both intermolecular contacts and binding site conformation that appear to contribute toward high affinity binding. Additionally, the anti-MTX VHH possessed relatively high specificity for MTX over closely related compounds aminopterin and folate, demonstrating that VHH domains are capable of binding low-molecular weight ligands with high affinity and specificity, despite their reduced interface.« less

[Research of Human-mouse Chimeric Antibodies Against Ebola Virus Nucleoprotein].

PubMed

Zhou, Rongping; Sun, Lina; Liu, Yang; Wu, Wei; Li, Chuan; Liang, Mifang; Qiu, Peihong

2016-01-01

The Ebola virus is highly infectious and can result in death in ≤ 90% of infected subjects. Detection of the Ebola virus and diagnosis of infection are extremely important for epidemic control. Presently, Chinese laboratories detect the nucleic acids of the Ebola virus by real-time reverse transcription-polymerase chain reaction (RT-PCR). However, such detection takes a relatively long time and necessitates skilled personnel and expensive equipment. Enzyme-linked immunosorbent assay (ELISA) of serum is simple, easy to operate, and can be used to ascertain if a patient is infected with the Ebola virus as well as the degree of infection. Hence, ELISA can be used in epidemiological investigations and is a strong complement to detection of nucleic acids. Cases of Ebola hemorrhagic fever have not been documented in China, so quality-control material for positive serology is needed. Construction and expression of human-mouse chimeric antibodies against the nucleoprotein of the Ebola virus was carried out. Genes encoding variable heavy (VH) and variable light (VL) chains were extracted and amplified from murine hybridoma cells. Genes encoding the VH and VL chains of monoclonal antibodies were amplified by RT-PCR. According to sequence analyses, a primer was designed to amplify functional sequences relative to VH and VL chain. The eukaryotic expression vector HL51-14 carrying some human antibody heavy chain- and light chain-constant regions was used. IgG antibodies were obtained by transient transfection of 293T cells. Subsequently, immunological detection and immunological identification were identified by ELISA, immunofluorescence assay, and western blotting. These results showed that we constructed and purified two human- mouse chimeric antibodies.

Genetic diversity of the human immunoglobulin heavy chain VH region.

PubMed

Li, Honghua; Cui, Xiangfeng; Pramanik, Sreemanta; Chimge, Nyam-Osor

2002-12-01

The human immunoglobulin heavy chain VH region is one of the most complex regions in the human genome. The high level of diversity of this region has been shown by a number of studies. However, because of the limitations of the conventional experimental methods, it has been difficult to learn the extent of the diversity and the underlying mechanisms. This review describes a number of new genetic approaches developed in the authors' laboratory. By using these approaches, significant progress has been made in assigning different VH sequences to their respective loci, in learning the diversity of gene segment number and composition among the VH haplotypes, and in learning VH gene segment organization in individual haplotypes. Information obtained toward this direction could help in understanding the mechanisms underlying VH region diversity and the biological impact of the VH region diversity.

Assessing heavy metal pollution in the surface soils of a region that had undergone three decades of intense industrialization and urbanization.

PubMed

Hu, Yuanan; Liu, Xueping; Bai, Jinmei; Shih, Kaimin; Zeng, Eddy Y; Cheng, Hefa

2013-09-01

Heavy metals in the surface soils from lands of six different use types in one of the world's most densely populated regions, which is also a major global manufacturing base, were analyzed to assess the impact of urbanization and industrialization on soil pollution. A total of 227 surface soil samples were collected and analyzed for major heavy metals (As, Cd, Co, Cr, Cu, Fe, Hg, Mn, Ni, Pb, and Zn) by using microwave-assisted acid digestion and inductively coupled plasma-mass spectrometry (ICP-MS). Multivariate analysis combined with enrichment factors showed that surface soils from the region (>7.2 × 10(4) km(2)) had mean Cd, Cu, Zn, and As concentrations that were over two times higher than the background values, with Cd, Cu, and Zn clearly contributed by anthropogenic sources. Soil pollution by Pb was more widespread than the other heavy metals, which was contributed mostly by anthropogenic sources. The results also indicate that Mn, Co, Fe, Cr, and Ni in the surface soils were primarily derived from lithogenic sources, while Hg and As contents in the surface soils were controlled by both natural and anthropogenic sources. The pollution level and potential ecological risk of the surface soils both decreased in the order of: urban areas > waste disposal/treatment sites ∼ industrial areas > agricultural lands ∼ forest lands > water source protection areas. These results indicate the significant need for the development of pollution prevention and reduction strategies to reduce heavy metal pollution for regions undergoing fast industrialization and urbanization.

The production and characterization of novel heavy-chain antibodies against the tandem repeat region of MUC1 mucin.

PubMed

Rahbarizadeh, Fatemeh; Rasaee, Mohammad J; Forouzandeh, Mehdi; Allameh, Abdolamir; Sarrami, Ramin; Nasiry, Habib; Sadeghizadeh, Majid

2005-01-01

Camelidae are known to produce immunoglobulins (Igs) devoid of light chains and constant heavy-chain domains (CH1). Antigen-specific fragments of these heavy-chain IgGs (VHH) are of great interest in biotechnology applications. This paper describes the first example of successfully raised heavy-chain antibodies in Camelus dromedarius (single-humped camel) and Camelus bactrianus (two-humped camel) against a MUC1 related peptide that is found to be an important epitope expressed in cancerous tissue. Camels were immunized against a synthetic peptide corresponding to the tandem repeat region of MUC1 mucin and cancerous tissue preparation obtained from patients suffering from breast carcinoma. Three IgG subclasses with different binding properties to protein A and G were purified by affinity chromatography. Both conventional and heavy-chain IgG antibodies were produced in response to MUC1-related peptide. The elicited antibodies could react specifically with the tandem repeat region of MUC1 mucin in an enzyme linked immunosorbant assay (ELISA). Anti-peptide antibodies were purified after passing antiserum over two affinity chromatography columns. Using ELISA, immunocytochemistry and Western blotting, the interaction of purified antibodies with different antigens was evaluated. The antibodies were observed to be selectively bound to antigens namely: MUC1 peptide (tandem repeat region), human milk fat globule membrane (HMFG), deglycosylated human milk fat globule membrane (D-HMFG), homogenized cancerous breast tissue and a native MUC1 purified from ascitic fluid. Ka values of specific polyclonal antipeptide antibodies were estimated in C. dromedarius and C. bactrianus, as 7 x 10(10) M(-1) and 1.4 x 10(10) M(-1) respectively.

Dominance of cyanobacterial and cryptophytic assemblage correlated to CDOM at heavy metal contamination sites of Gujarat, India.

PubMed

Patidar, Shailesh Kumar; Chokshi, Kaumeel; George, Basil; Bhattacharya, Sourish; Mishra, Sandhya

2015-01-01

Industrial clusters of Gujarat, India, generate high quantity of effluents which are received by aquatic bodies such as estuary and coastal water. In the present study, microalgal assemblage, heavy metals, and physico-chemical variables were studied from different habitats. Principal component analysis revealed that biovolume of cyanobacterial and cryptophytic community positively correlated with the heavy metal concentration (Hg, As, Zn, Fe, Mo, Ni, and Co) and chromophoric dissolved organic matter (CDOM) under hypoxic environment. Green algae and diatoms dominated at comparatively lower nitrate concentration which was positively associated with Pb and Mn.

The origin, historical variations, and distribution of heavy metals in the Qiongzhou Strait and nearby marine areas

NASA Astrophysics Data System (ADS)

Zhang, Zhiqiang; Chen, Liang; Wang, Weiping; Li, Tuanjie; Zu, Tingting

2017-04-01

We analyzed heavy metal concentrations in a number of surface sediments and cores from the Qiongzhou Strait and surrounding marine areas. The areas of high concentrations are primarily outside the eastern mouth of the Qiongzhou Strait and on the west side of the Leizhou Peninsula, whereas the areas of low concentrations are located primarily in the eastern Qiongzhou Strait. The maximum Cd, Pb and Zn concentrations in the samples collected in our study do not exceed the official standards for marine sediments, whereas the concentrations of Cr and Cu slightly exceed the standards. Correlations exist between the concentrations of Cu, Pb, Zn, Cr and Cd, and the concentrations of these metals are positively correlated with the mean particle size (φ value), indicating that the finer sediments have adsorbed greater amounts of heavy metal elements than the coarser sediments. An evaluation of the potential environmental risks demonstrates that certain indices of heavy metal pollution and environmental risks are relatively low and may be assigned low risk levels, thereby indicating that, in terms of heavy metals, the marine sedimentary environment in this region is only mildly impacted. Our analysis of the contaminant origins shows that the heavy metals in this region primarily originate in the Pearl River Estuary and that a small amount of them is derived from local runoff. The elevated heavy metal concentrations from the upper sections of the cores started 130 years ago, which indicats that heavy metals in the surface sediments are primarily due to human activities associated with industrialization.

Source identification of heavy metals in peri-urban agricultural soils of southeast China: An integrated approach.

PubMed

Hu, Wenyou; Wang, Huifeng; Dong, Lurui; Huang, Biao; Borggaard, Ole K; Bruun Hansen, Hans Christian; He, Yue; Holm, Peter E

2018-06-01

Intensive human activities, in particular agricultural and industrial production have led to heavy metal accumulation in the peri-urban agricultural soils of China threatening soil environmental quality and agricultural product security. A combination of spatial analysis (SA), Pb isotope ratio analysis (IRA), input fluxes analysis (IFA), and positive matrix factorization (PMF) model was successfully used to assess the status and sources of heavy metals in typical peri-urban agricultural soils from a rapidly developing region of China. Mean concentrations of Cd, As, Hg, Pb, Cu, Zn and Cr in surface soils (0-20 cm) were 0.31, 11.2, 0.08, 35.6, 44.8, 119.0 and 97.0 mg kg -1 , respectively, exceeding the local background levels except for Hg. Spatial distribution of heavy metals revealed that agricultural activities have significant influence on heavy metal accumulation in the surface soils. Isotope ratio analysis suggested that fertilization along with atmospheric deposition were the major sources of heavy metal accumulation in the soils. Based on the PMF model, the relative contribution rates of the heavy metals due to fertilizer application, atmospheric deposition, industrial emission, and soil parent materials were 30.8%, 33.0%, 25.4% and 10.8%, respectively, demonstrating that anthropogenic activities had significantly higher contribution than natural sources. This study provides a reliable and robust approach for heavy metals source apportionment in this particular peri-urban area with a clear potential for future application in other regions. Copyright © 2018 Elsevier Ltd. All rights reserved.

A radar-based regional extreme rainfall analysis to derive the thresholds for a novel automatic alert system in Switzerland

NASA Astrophysics Data System (ADS)

Panziera, Luca; Gabella, Marco; Zanini, Stefano; Hering, Alessandro; Germann, Urs; Berne, Alexis

2016-06-01

This paper presents a regional extreme rainfall analysis based on 10 years of radar data for the 159 regions adopted for official natural hazard warnings in Switzerland. Moreover, a nowcasting tool aimed at issuing heavy precipitation regional alerts is introduced. The two topics are closely related, since the extreme rainfall analysis provides the thresholds used by the nowcasting system for the alerts. Warm and cold seasons' monthly maxima of several statistical quantities describing regional rainfall are fitted to a generalized extreme value distribution in order to derive the precipitation amounts corresponding to sub-annual return periods for durations of 1, 3, 6, 12, 24 and 48 h. It is shown that regional return levels exhibit a large spatial variability in Switzerland, and that their spatial distribution strongly depends on the duration of the aggregation period: for accumulations of 3 h and shorter, the largest return levels are found over the northerly alpine slopes, whereas for longer durations the southern Alps exhibit the largest values. The inner alpine chain shows the lowest values, in agreement with previous rainfall climatologies. The nowcasting system presented here is aimed to issue heavy rainfall alerts for a large variety of end users, who are interested in different precipitation characteristics and regions, such as, for example, small urban areas, remote alpine catchments or administrative districts. The alerts are issued not only if the rainfall measured in the immediate past or forecast in the near future exceeds some predefined thresholds but also as soon as the sum of past and forecast precipitation is larger than threshold values. This precipitation total, in fact, has primary importance in applications for which antecedent rainfall is as important as predicted one, such as urban floods early warning systems. The rainfall fields, the statistical quantity representing regional rainfall and the frequency of alerts issued in case of continuous threshold exceedance are some of the configurable parameters of the tool. The analysis of the urban flood which occurred in the city of Schaffhausen in May 2013 suggests that this alert tool might have complementary skill with respect to radar-based thunderstorm nowcasting systems for storms which do not show a clear convective signature.

Comprehensive identification of mutations induced by heavy-ion beam irradiation in Arabidopsis thaliana.

PubMed

Hirano, Tomonari; Kazama, Yusuke; Ishii, Kotaro; Ohbu, Sumie; Shirakawa, Yuki; Abe, Tomoko

2015-04-01

Heavy-ion beams are widely used for mutation breeding and molecular biology. Although the mutagenic effects of heavy-ion beam irradiation have been characterized by sequence analysis of some restricted chromosomal regions or loci, there have been no evaluations at the whole-genome level or of the detailed genomic rearrangements in the mutant genomes. In this study, using array comparative genomic hybridization (array-CGH) and resequencing, we comprehensively characterized the mutations in Arabidopsis thaliana genomes irradiated with Ar or Fe ions. We subsequently used this information to investigate the mutagenic effects of the heavy-ion beams. Array-CGH demonstrated that the average number of deleted areas per genome were 1.9 and 3.7 following Ar-ion and Fe-ion irradiation, respectively, with deletion sizes ranging from 149 to 602,180 bp; 81% of the deletions were accompanied by genomic rearrangements. To provide a further detailed analysis, the genomes of the mutants induced by Ar-ion beam irradiation were resequenced, and total mutations, including base substitutions, duplications, in/dels, inversions, and translocations, were detected using three algorithms. All three resequenced mutants had genomic rearrangements. Of the 22 DNA fragments that contributed to the rearrangements, 19 fragments were responsible for the intrachromosomal rearrangements, and multiple rearrangements were formed in the localized regions of the chromosomes. The interchromosomal rearrangements were detected in the multiply rearranged regions. These results indicate that the heavy-ion beams led to clustered DNA damage in the chromosome, and that they have great potential to induce complicated intrachromosomal rearrangements. Heavy-ion beams will prove useful as unique mutagens for plant breeding and the establishment of mutant lines. © 2015 The Authors The Plant Journal © 2015 John Wiley & Sons Ltd.

Examination of Heavy Metals and Particulate Matter Exposures and Effects in Susceptible Wards in the Washington, D.C. Region

NASA Astrophysics Data System (ADS)

Greene, N. A.; Morris, D. R.

2004-05-01

The District of Columbia has one of the greatest health disparities of cancer in the nation and ranks seventh highest as one of the unhealthiest places to live due to poor air quality (EPA Report, 1999). Also, a 1999 report from the Centers for Disease Control stated that the District had the highest overall rate of cancer incidence in the nation. Particulate matter is one of the major contributors to pollution in the environment. Quite often particulate matter is composed of toxic materials including heavy metals, pesticides, and spores. In some cases, the heavy metal particulates are considered carcinogenic. They are typically characterized as particles with diameters smaller than 1 m and are easily deposited into the alveolar regions of the human lungs, which can impose threatening health risks. In this study, I will design and execute an environmental exposure assessment for PM2.5, PM10, and heavy metals like chromium, as well as lead, cadmium and arsenic, in four observed wards of Washington, DC. Most interestingly, spatial distributions of both aerosols and heavy metals will be characterized as a function of size and mass properties. This will formulate a limited climatology of both types of particulate matter and selected heavy metals for specific regions within the District of Columbia. This dataset will further be related to epidemiological data and health outcomes for the observed areas of study. The essence of this study lies in its notoriety as the first to generate a dataset that focuses on toxic air pollutants in particular wards and may be utilized in various aspects of public health.

Evaluating Behavioral Economic Models of Heavy Drinking Among College Students.

PubMed

Acuff, Samuel F; Soltis, Kathryn E; Dennhardt, Ashley A; Berlin, Kristoffer S; Murphy, James G

2018-05-14

Heavy drinking among college students is a significant public health concern that can lead to profound social and health consequences, including alcohol use disorder. Behavioral economics posits that low future orientation and high valuation of alcohol (alcohol demand) combined with deficits in alternative reinforcement increase the likelihood of alcohol misuse (Bickel et al., 2011). Despite this, no study has examined the incremental utility of all three variables simultaneously in a comprehensive model METHOD: The current study uses structural equation modeling to test the associations between behavioral economic variables - alcohol demand (latent), future orientation (measured with a delay discounting task and the Consideration of Future Consequences (CFC) scale), and proportionate substance-related reinforcement - and alcohol consumption and problems among 393 heavy drinking college students. Two models are tested: 1) an iteration of the reinforcer pathology model that includes an interaction between future orientation and alcohol demand; and 2) an alternative model evaluating the interconnectedness of behavioral economic variables in predicting problematic alcohol use RESULTS: The interaction effects in model 1 were nonsignificant. Model 2 suggests that greater alcohol demand and proportionate substance-related reinforcement is associated with greater alcohol consumption and problems. Further, CFC was associated with alcohol-related problems and lower proportionate substance-related reinforcement but was not significantly associated with alcohol consumption or alcohol demand. Finally, greater proportionate substance-related reinforcement was associated with greater alcohol demand CONCLUSIONS: Our results support the validity of the behavioral economic reinforcer pathology model as applied to young adult heavy drinking. This article is protected by copyright. All rights reserved. This article is protected by copyright. All rights reserved.

Inter-individual variability in the patterns of responses for electromyography and mechanomyography during cycle ergometry using an RPE-clamp model.

PubMed

Cochrane-Snyman, Kristen C; Housh, Terry J; Smith, Cory M; Hill, Ethan C; Jenkins, Nathaniel D M; Schmidt, Richard J; Johnson, Glen O

2016-09-01

To examine inter-individual variability versus composite models for the patterns of responses for electromyography (EMG) and mechanomyography (MMG) versus time relationships during moderate and heavy cycle ergometry using a rating of perceived exertion (RPE) clamp model. EMG amplitude (amplitude root-mean-square, RMS), EMG mean power frequency (MPF), MMG-RMS, and MMG-MPF were collected during two, 60-min rides at a moderate (RPE at the gas exchange threshold; RPEGET) and heavy (RPE at 15 % above the GET; RPEGET+15 %) intensity when RPE was held constant (clamped). Composite (mean) and individual responses for EMG and MMG parameters were compared during each 60-min ride. There was great inter-individual variability for each EMG and MMG parameters at RPEGET and RPEGET+15 %. Composite models showed decreases in EMG-RMS (r (2) = -0.92 and R (2) = 0.96), increases in EMG-MPF (R (2) = 0.90), increases in MMG-RMS (r (2) = 0.81 and 0.55), and either no change or a decrease (r (2) = 0.34) in MMG-MPF at RPEGET and RPEGET+15 %, respectively. The results of the present study indicated that there were differences between composite and individual patterns of responses for EMG and MMG parameters during moderate and heavy cycle ergometry at a constant RPE. Thus, composite models did not represent the unique muscle activation strategies exhibited by individual responses when cycling in the moderate and heavy intensity domains when using an RPE-clamp model.

Heavy metal-induced stress in rice crops detected using multi-temporal Sentinel-2 satellite images.

PubMed

Liu, Meiling; Wang, Tiejun; Skidmore, Andrew K; Liu, Xiangnan

2018-05-05

Regional-level information on heavy metal pollution in agro-ecosystems is essential for food security because excessive levels of heavy metals in crops may pose risks to humans. However, collecting this information over large areas is inherently costly. This paper investigates the possibility of applying multi-temporal Sentinel-2 satellite images to detect heavy metal-induced stress (i.e., Cd stress) in rice crops in four study areas in Zhuzhou City, Hunan Province, China. For this purpose, we compared seven Sentinel-2 images acquired in 2016 and 2017 with in situ measured hyper-spectral data, chlorophyll content, rice leaf area index, and heavy metal concentrations in soil collected from 2014 to 2017. Vegetation indices (VIs) related to red edge bands were referred to as the sensitive indicators for screening stressed rice from unstressed rice. The coefficients of spatio-temporal variation (CSTV) derived from the VIs allowed us to discriminate crops exposed to pollution from heavy metals as well as environmental stressors. The results indicate that (i) the red edge chlorophyll index, the red edge position index, and the normalized difference red edge 2 index derived from multi-temporal Sentinel-2 images were good indicators for screening stressed rice from unstressed rice; (ii) Rice under Cd stress remained stable with lower CSTV values of VIs overall growth stages in the experimental region, whereas rice under other stressors (i.e., pests and disease) showed abrupt changes at some growth stages and presented "hot spots" with greater CSTV values; and (iii) the proposed spatio-temporal anomaly detection method was successful at detecting rice under Cd stress; and CSTVs of rice VIs stabilized regardless of whether they were applied to consecutive growth stages or to two different crop years. This study suggests that regional heavy metal stress may be accurately detected using multi-temporal Sentinel-2 images, using VIs sensitive to the spatio-temporal characteristics of crops. Copyright © 2018 Elsevier B.V. All rights reserved.

Integrated GIS and multivariate statistical analysis for regional scale assessment of heavy metal soil contamination: A critical review.

PubMed

Hou, Deyi; O'Connor, David; Nathanail, Paul; Tian, Li; Ma, Yan

2017-12-01

Heavy metal soil contamination is associated with potential toxicity to humans or ecotoxicity. Scholars have increasingly used a combination of geographical information science (GIS) with geostatistical and multivariate statistical analysis techniques to examine the spatial distribution of heavy metals in soils at a regional scale. A review of such studies showed that most soil sampling programs were based on grid patterns and composite sampling methodologies. Many programs intended to characterize various soil types and land use types. The most often used sampling depth intervals were 0-0.10 m, or 0-0.20 m, below surface; and the sampling densities used ranged from 0.0004 to 6.1 samples per km 2 , with a median of 0.4 samples per km 2 . The most widely used spatial interpolators were inverse distance weighted interpolation and ordinary kriging; and the most often used multivariate statistical analysis techniques were principal component analysis and cluster analysis. The review also identified several determining and correlating factors in heavy metal distribution in soils, including soil type, soil pH, soil organic matter, land use type, Fe, Al, and heavy metal concentrations. The major natural and anthropogenic sources of heavy metals were found to derive from lithogenic origin, roadway and transportation, atmospheric deposition, wastewater and runoff from industrial and mining facilities, fertilizer application, livestock manure, and sewage sludge. This review argues that the full potential of integrated GIS and multivariate statistical analysis for assessing heavy metal distribution in soils on a regional scale has not yet been fully realized. It is proposed that future research be conducted to map multivariate results in GIS to pinpoint specific anthropogenic sources, to analyze temporal trends in addition to spatial patterns, to optimize modeling parameters, and to expand the use of different multivariate analysis tools beyond principal component analysis (PCA) and cluster analysis (CA). Copyright © 2017 Elsevier Ltd. All rights reserved.

Proceedings of West Coast Regional Coastal Design Conference Held on 7-8 November 1985 at Oakland, California.

DTIC Science & Technology

1986-04-01

Lon- don, 53 2p. Yancey, T.E. and Lee, J.W. 1972. Major heavy mineral assemblages and heavy mineral provinces of the central California Coast Region...sites have been collected. A data base and a user-friendly retrieval system have been de - veloped and are presently undergoing evaluation before they are...Continental Margin The tectonic evolution of the Oregon coastline appears to be controlled at present by the underthrusting of the Juan de Fuca plate beneath

Operational 0-3 h probabilistic quantitative precipitation forecasts: Recent performance and potential enhancements

NASA Astrophysics Data System (ADS)

Sokol, Z.; Kitzmiller, D.; Pešice, P.; Guan, S.

2009-05-01

The NOAA National Weather Service has maintained an automated, centralized 0-3 h prediction system for probabilistic quantitative precipitation forecasts since 2001. This advective-statistical system (ADSTAT) produces probabilities that rainfall will exceed multiple threshold values up to 50 mm at some location within a 40-km grid box. Operational characteristics and development methods for the system are described. Although development data were stratified by season and time of day, ADSTAT utilizes only a single set of nation-wide equations that relate predictor variables derived from radar reflectivity, lightning, satellite infrared temperatures, and numerical prediction model output to rainfall occurrence. A verification study documented herein showed that the operational ADSTAT reliably models regional variations in the relative frequency of heavy rain events. This was true even in the western United States, where no regional-scale, gridded hourly precipitation data were available during the development period in the 1990s. An effort was recently launched to improve the quality of ADSTAT forecasts by regionalizing the prediction equations and to adapt the model for application in the Czech Republic. We have experimented with incorporating various levels of regional specificity in the probability equations. The geographic localization study showed that in the warm season, regional climate differences and variations in the diurnal temperature cycle have a marked effect on the predictor-predictand relationships, and thus regionalization would lead to better statistical reliability in the forecasts.

Diesel retrofit assessment for NYS DOT to retrofit its existing engine fleet.

DOT National Transportation Integrated Search

2010-08-01

The NYS DEC has required the use of retrofit technologies for various state agency, state public authority, and regional public authority heavy duty vehicles, as well as heavy duty vehicles used on behalf of such agencies and authorities. This report...

Nuclear recoil effect on g-factor of heavy ions: prospects for tests of quantum electrodynamics in a new region

NASA Astrophysics Data System (ADS)

Malyshev, A. V.; Shabaev, V. M.; Glazov, D. A.; Tupitsyn, I. I.

2017-12-01

The nuclear recoil effect on the g-factor of H- and Li-like heavy ions is evaluated to all orders in αZ. The calculations include an approximate treatment of the nuclear size and the electron-electron interaction corrections to the recoil effect. As the result, the second largest contribution to the theoretical uncertainty of the g-factor values of 208Pb79+ and 238U89+ is strongly reduced. Special attention is paid to tests of the QED recoil effect on the g-factor in experiments with heavy ions. It is found that, while the QED recoil effect on the g-factor value is masked by the uncertainties of the nuclear size and nuclear polarization contributions, it can be probed on a few-percent level in the specific difference of the g-factors of H- and Li-like heavy ions. This provides a unique opportunity to test QED in a new region-strong-coupling regime beyond the Furry picture.

Nuclear Recoil Effect on the g-Factor of Heavy Ions: Prospects for Tests of Quantum Electrodynamics in a New Region

NASA Astrophysics Data System (ADS)

Malyshev, A. V.; Shabaev, V. M.; Glazov, D. A.; Tupitsyn, I. I.

2017-12-01

The nuclear recoil effect on the g-factor of H- and Li-like heavy ions is evaluated to all orders in αZ. The calculations include an approximate treatment of the nuclear size and the electron-electron interaction corrections to the recoil effect. As the result, the second largest contribution to the theoretical uncertainty of the g-factor values of 208Pb79+ and 238U89+ is strongly reduced. Special attention is paid to tests of the QED recoil effect on the g-factor in experiments with heavy ions. It is found that, while the QED recoil effect on the gfactor value is masked by the uncertainties of the nuclear size and nuclear polarization contributions, it can be probed on a few-percent level in the specific difference of the g-factors of H- and Li-like heavy ions. This provides a unique opportunity to test QED in a new region of the strong-coupling regime beyond the Furry picture.

Precise assignment of the heavy-strand promoter of mouse mitochondrial DNA: cognate start sites are not required for transcriptional initiation.

PubMed Central

Chang, D D; Clayton, D A

1986-01-01

Transcription of the heavy strand of mouse mitochondrial DNA starts from two closely spaced, distinct sites located in the displacement loop region of the genome. We report here an analysis of regulatory sequences required for faithful transcription from these two sites. Data obtained from in vitro assays demonstrated that a 51-base-pair region, encompassing nucleotides -40 to +11 of the downstream start site, contains sufficient information for accurate transcription from both start sites. Deletion of the 3' flanking sequences, including one or both start sites to -17, resulted in the initiation of transcription by the mitochondrial RNA polymerase from alternative sites within vector DNA sequences. This feature places the mouse heavy-strand promoter uniquely among other known mitochondrial promoters, all of which absolutely require cognate start sites for transcription. Comparison of the heavy-strand promoter with those of other vertebrate mitochondrial DNAs revealed a remarkably high rate of sequence divergence among species. Images PMID:3785226

Improved modelling of ship SO 2 emissions—a fuel-based approach

NASA Astrophysics Data System (ADS)

Endresen, Øyvind; Bakke, Joachim; Sørgård, Eirik; Flatlandsmo Berglen, Tore; Holmvang, Per

Significant variations are apparent between the various reported regional and global ship SO 2 emission inventories. Important parameters for SO 2 emission modelling are sulphur contents and marine fuel consumption. Since 1993, the global average sulphur content for heavy fuel has shown an overall downward trend, while the bunker sale has increased. We present an improved bottom up approach to estimate marine sulphur emissions from ship transportation, including the geographical distribution. More than 53,000 individual bunker samples are used to establish regionally and globally (volume) weighted average sulphur contents for heavy and distillate marine fuels. We find that the year 2002 sulphur content in heavy fuels varies regionally from 1.90% (South America) to 3.07% (Asia), with a globally weighted average of 2.68% sulphur. The calculated globally weighted average content for heavy fuels is found to be 5% higher than the average (arithmetic mean) sulphur content commonly used. The reason for this is likely that larger bunker stems are mainly of high-viscosity heavy fuel, which tends to have higher sulphur values compared to lower viscosity fuels. The uncertainties in SO 2 inventories are significantly reduced using our updated SO 2 emission factors (volume-weighted sulphur content). Regional marine bunker sales figures are combined with volume-weighted sulphur contents for each region to give a global SO 2 emission estimate in the range of 5.9-7.2 Tg (SO 2) for international marine transportation. Also taking into account the domestic sales, the total emissions from all ocean-going transportation is estimated to be 7.0-8.5 Tg (SO 2). Our estimate is significantly lower than recent global estimate reported by Corbett and Koehler [2003. Journal of Geophysical Research: Atmospheres 108] (6.49 Tg S or about 13.0 Tg SO 2). Endresen et al. [2004. Journal of Geophysical Research 109, D23302] claim that uncertainties in input data for the activity-based method will give too high emission estimates. We also indicate that this higher estimate will almost give doubling of regional emissions, compared to detailed movement-based estimates. The paper presents an alternative approach to estimate present overall SO 2 ship emissions with improved accuracy.

Impact of GPS-Integrated Water Vapour assimilation on Regional Climate Model simulations of heavy precipitation events in the western Mediterranean

NASA Astrophysics Data System (ADS)

Caldas-Alvarez, Alberto; Khodayar, Samiro

2017-04-01

An accurate representation of the devastating heavy precipitation events, that typically strike the western Mediterranean regions by autumn, is still a challenge for current weather prediction models. The misrepresentation of the atmospheric moisture distribution and the convective processes where it plays a role have been pointed out as sources of error in their prediction. Provided the fast variability of water vapour in the atmosphere, an improved representation of its distribution is expected from the Data Assimilation (DA) of very frequent measurements, such is the case of Global Positioning System derived Integrated Water Vapour (GPS-IWV). Moreover, an improved representation of the model physics is expected from the application of the DA on fine-scale model grids. The presented research work aims at assessing the impact of the selective assimilation of GPS-IWV retrievals on the representation of the atmospheric moisture distribution in relation to heavy precipitation in seasonal simulations over the western Mediterranean. COSMO simulations in CLimate Mode (CCLM) are run with two different horizontal resolutions (2.8 km and 7 km) to reproduce the period September 2012 to March 2013, encompassing the Special Observation Period 1 (SOP1) of the Hydrological Cycle in the Mediterranean Experiment (HyMeX). A state-of-art GPS-IWV data set, specially homogenized for the western Mediterranean countries spanning the aforementioned seven month period is selectively assimilated into the model runs with a high frequency (10 minutes). The impact of such assimilation combined with the grid refinement of the model is assessed in the representation of the atmospheric moisture distribution and its influence in the processes leading to deep moist convection and heavy rain. Observational data sets of precipitation obtained with the Climate Prediction Centre MORPHing technique (CMORPH), from the HyMeX rain gauge network as well as the GPS-IWV retrievals are employed to validate our model results and support the process studies. Results show remarkable discrepancies in the representation of the temporal evolution of IWV by CCLM well corrected by the assimilation. This rectification of the amount of water vapour in the atmosphere influences the intensity and location of extreme precipitation, albeit the sign and extent of this influence was shown to be event-dependent.

Contamination and spatial variation of heavy metals in the soil-rice system in Nanxun County, Southeastern China.

PubMed

Zhao, Keli; Fu, Weijun; Ye, Zhengqian; Zhang, Chaosheng

2015-01-28

There is an increasing concern about heavy metal contamination in farmland in China and worldwide. In order to reveal the spatial features of heavy metals in the soil-rice system, soil and rice samples were collected from Nanxun, Southeastern China. Compared with the guideline values, elevated concentrations of heavy metals in soils were observed, while heavy metals in rice still remained at a safe level. Heavy metals in soils and rice had moderate to strong spatial dependence (nugget/sill ratios: 13.2% to 49.9%). The spatial distribution of copper (Cu), nickel (Ni), lead (Pb) and zinc (Zn) in soils illustrated that their high concentrations were located in the southeast part. The high concentrations of cadmium (Cd) in soils were observed in the northeast part. The accumulation of all the studied metals is related to the long-term application of agrochemicals and industrial activities. Heavy metals in rice showed different spatial distribution patterns. Cross-correlograms were produced to quantitatively determine the spatial correlation between soil properties and heavy metals composition in rice. The pH and soil organic matter had significant spatial correlations with the concentration of heavy metals in rice. Most of the selected variables had clear spatial correlation ranges for heavy metals in rice, which could be further applied to divide agricultural management zones.

Contamination and Spatial Variation of Heavy Metals in the Soil-Rice System in Nanxun County, Southeastern China

PubMed Central

Zhao, Keli; Fu, Weijun; Ye, Zhengqian; Zhang, Chaosheng

2015-01-01

There is an increasing concern about heavy metal contamination in farmland in China and worldwide. In order to reveal the spatial features of heavy metals in the soil-rice system, soil and rice samples were collected from Nanxun, Southeastern China. Compared with the guideline values, elevated concentrations of heavy metals in soils were observed, while heavy metals in rice still remained at a safe level. Heavy metals in soils and rice had moderate to strong spatial dependence (nugget/sill ratios: 13.2% to 49.9%). The spatial distribution of copper (Cu), nickel (Ni), lead (Pb) and zinc (Zn) in soils illustrated that their high concentrations were located in the southeast part. The high concentrations of cadmium (Cd) in soils were observed in the northeast part. The accumulation of all the studied metals is related to the long-term application of agrochemicals and industrial activities. Heavy metals in rice showed different spatial distribution patterns. Cross-correlograms were produced to quantitatively determine the spatial correlation between soil properties and heavy metals composition in rice. The pH and soil organic matter had significant spatial correlations with the concentration of heavy metals in rice. Most of the selected variables had clear spatial correlation ranges for heavy metals in rice, which could be further applied to divide agricultural management zones. PMID:25635917

Hubble Friday - Heavy Metal Stars

NASA Image and Video Library

2017-12-08

Hubble rocks out with heavy metal stars! This 10.5-billion-year-old globular cluster, NGC 6496, is home to heavy-metal stars of a celestial kind! The stars comprising this spectacular spherical cluster are enriched with much higher proportions of metals — elements heavier than hydrogen and helium are curiously known as metals in astronomy — than stars found in similar clusters. A handful of these high-metallicity stars are also variable stars, meaning that their brightness fluctuates over time. NGC 6496 hosts a selection of long-period variables — giant pulsating stars whose brightness can take up to, and even over, a thousand days to change — and short-period eclipsing binaries, which dim when eclipsed by a stellar companion. The nature of the variability of these stars can reveal important information about their mass, radius, luminosity, temperature, composition, and evolution, providing astronomers with measurements that would be difficult or even impossible to obtain through other methods. NGC 6496 was discovered in 1826 by Scottish astronomer James Dunlop. The cluster resides at about 35,000 light-years away in the southern constellation of Scorpius (The Scorpion). Image credit: ESA/Hubble & NASA, Acknowledgement: Judy Schmidt Text credit: European Space Agency Read more: go.nasa.gov/1U2wqGW

Search for heavy neutrinos in K + → μ + ν H decays

DOE PAGES

Artamonov, A. V.; Bassalleck, B.; Bhuyan, B.; ...

2015-03-02

Here, evidence of a heavy neutrino, ν H, in the K +→μ +ν H decays was sought using the E949 experimental data with an exposure of 1.70 × 10 12 stopped kaons. With the major background from the radiative K +→μ +ν μγ decay understood and suppressed, upper limits (90% C.L.) on the neutrino mixing matrix element between the muon and heavy neutrinos, |U μH| 2, were set at the level of 10 –7 to 10 –9 for the heavy neutrino mass region 175 to 300 MeV/c 2.

Spatiotemporal variability of rainfall extremes in monsoonal climates - examples from the South American Monsoon and the Indian Monsoon Systems (Invited)

NASA Astrophysics Data System (ADS)

Bookhagen, B.; Boers, N.; Marwan, N.; Malik, N.; Kurths, J.

2013-12-01

Monsoonal rainfall is the crucial component for more than half of the world's population. Runoff associated with monsoon systems provide water resources for agriculture, hydropower, drinking-water generation, recreation, and social well-being and are thus a fundamental part of human society. However, monsoon systems are highly stochastic and show large variability on various timescales. Here, we use various rainfall datasets to characterize spatiotemporal rainfall patterns using traditional as well as new approaches emphasizing nonlinear spatial correlations from a complex networks perspective. Our analyses focus on the South American (SAMS) and Indian (ISM) Monsoon Systems on the basis of Tropical Rainfall Measurement Mission (TRMM) using precipitation radar and passive-microwave products with horizontal spatial resolutions of ~5x5 km^2 (products 2A25, 2B31) and 25x25 km^2 (3B42) and interpolated rainfall-gauge data for the ISM (APHRODITE, 25x25 km^2). The eastern slopes of the Andes of South America and the southern front of the Himalaya are characterized by significant orographic barriers that intersect with the moisture-bearing, monsoonal wind systems. We demonstrate that topography exerts a first-order control on peak rainfall amounts on annual timescales in both mountain belts. Flooding in the downstream regions is dominantly caused by heavy rainfall storms that propagate deep into the mountain range and reach regions that are arid and without vegetation cover promoting rapid runoff. These storms exert a significantly different spatial distribution than average-rainfall conditions and assessing their recurrence intervals and prediction is key in understanding flooding for these regions. An analysis of extreme-value distributions of our high-spatial resolution data reveal that semi-arid areas are characterized by low-frequency/high-magnitude events (i.e., are characterized by a ';heavy tail' distribution), whereas regions with high mean annual rainfall have a less skewed distribution. In a second step, an analysis of the spatial characteristics of extreme rainfall synchronicity by means of complex networks reveals patterns of the propagation of extreme rainfall events. These patterns differ substantially from those obtained from the mean annual rainfall distribution. In addition, we have developed a scheme to predict rainfall extreme events in the eastern Central Andes based on event synchronization and spatial patterns of complex networks. The presented methods and result will allow to critically evaluate data and models in space and time.

Effects of selected soil properties on phytoremediation applicability for heavy-metal-contaminated soils in the Apulia region, Southern Italy.

PubMed

Farrag, K; Senesi, N; Rovira, P Soler; Brunetti, G

2012-11-01

Phytoremediation is a well-known promising alternative to conventional approaches used for the remediation of diffused and moderated contaminated soils. The evaluation of the accumulation, availability, and interactions of heavy metals in soil is a priority objective for the possible use of phytoremediation techniques such as phytoextraction and phytostabilization. The soils used in this work were collected from a number of sites inside a protected area in the Apulia region (Southern Italy), which were contaminated by various heavy metals originated from the disposal of wastes of different sources of origin. Soils examined contained Cd, Cr, Cu, Ni, Pb, and Zn in amounts exceeding the critical limits imposed by EU and Italian laws. However, the alkaline conditions, high organic matter content, and silty to silty loamy texture of soils examined would suggest a reduced availability of heavy metals to plants. Due to the high total content but the low available fraction of heavy metals analyzed, especially Cr, phytoextraction appears not to be a promising remediation approach in the sites examined, whereas phytostabilization appears to be the best technique for metal decontamination in the studied areas.

Distribution of Organic Carbon in the Sediments of Xinxue River and the Xinxue River Constructed Wetland, China.

PubMed

Cao, Qingqing; Wang, Renqing; Zhang, Haijie; Ge, Xiuli; Liu, Jian

2015-01-01

Wetland ecosystems are represented as a significant reservoir of organic carbon and play an important role in mitigating the greenhouse effect. In order to compare the compositions and distribution of organic carbon in constructed and natural river wetlands, sediments from the Xinxue River Constructed Wetland and the Xinxue River, China, were sampled at two depths (0-15 cm and 15-25 cm) in both upstream and downstream locations. Three types of organic carbon were determined: light fraction organic carbon, heavy fraction organic carbon, and dissolved organic carbon. The results show that variations in light fraction organic carbon are significantly larger between upstream and downstream locations than they are between the two wetland types; however, the opposite trend is observed for the dissolved organic carbon. There are no significant differences in the distribution of heavy fraction organic carbon between the discrete variables (e.g., between the two depths, the two locations, or the two wetland types). However, there are significant cross-variable differences; for example, the distribution patterns of heavy fraction organic carbon between wetland types and depths, and between wetland types and locations. Correlation analysis reveals that light fraction organic carbon is positively associated with light fraction nitrogen in both wetlands, while heavy fraction organic carbon is associated with both heavy fraction nitrogen and the moisture content in the constructed wetland. The results of this study demonstrate that the constructed wetland, which has a relatively low background value of heavy fraction organic carbon, is gradually accumulating organic carbon of different types, with the level of accumulation dependent on the balance between carbon accumulation and carbon decomposition. In contrast, the river wetland has relatively stable levels of organic carbon.

Distribution of Organic Carbon in the Sediments of Xinxue River and the Xinxue River Constructed Wetland, China

PubMed Central

Cao, Qingqing; Wang, Renqing; Zhang, Haijie; Ge, Xiuli; Liu, Jian

2015-01-01

Wetland ecosystems are represented as a significant reservoir of organic carbon and play an important role in mitigating the greenhouse effect. In order to compare the compositions and distribution of organic carbon in constructed and natural river wetlands, sediments from the Xinxue River Constructed Wetland and the Xinxue River, China, were sampled at two depths (0–15 cm and 15–25 cm) in both upstream and downstream locations. Three types of organic carbon were determined: light fraction organic carbon, heavy fraction organic carbon, and dissolved organic carbon. The results show that variations in light fraction organic carbon are significantly larger between upstream and downstream locations than they are between the two wetland types; however, the opposite trend is observed for the dissolved organic carbon. There are no significant differences in the distribution of heavy fraction organic carbon between the discrete variables (e.g., between the two depths, the two locations, or the two wetland types). However, there are significant cross-variable differences; for example, the distribution patterns of heavy fraction organic carbon between wetland types and depths, and between wetland types and locations. Correlation analysis reveals that light fraction organic carbon is positively associated with light fraction nitrogen in both wetlands, while heavy fraction organic carbon is associated with both heavy fraction nitrogen and the moisture content in the constructed wetland. The results of this study demonstrate that the constructed wetland, which has a relatively low background value of heavy fraction organic carbon, is gradually accumulating organic carbon of different types, with the level of accumulation dependent on the balance between carbon accumulation and carbon decomposition. In contrast, the river wetland has relatively stable levels of organic carbon. PMID:26230255

A physics-based probabilistic forecasting model for rainfall-induced shallow landslides at regional scale

NASA Astrophysics Data System (ADS)

Zhang, Shaojie; Zhao, Luqiang; Delgado-Tellez, Ricardo; Bao, Hongjun

2018-03-01

Conventional outputs of physics-based landslide forecasting models are presented as deterministic warnings by calculating the safety factor (Fs) of potentially dangerous slopes. However, these models are highly dependent on variables such as cohesion force and internal friction angle which are affected by a high degree of uncertainty especially at a regional scale, resulting in unacceptable uncertainties of Fs. Under such circumstances, the outputs of physical models are more suitable if presented in the form of landslide probability values. In order to develop such models, a method to link the uncertainty of soil parameter values with landslide probability is devised. This paper proposes the use of Monte Carlo methods to quantitatively express uncertainty by assigning random values to physical variables inside a defined interval. The inequality Fs < 1 is tested for each pixel in n simulations which are integrated in a unique parameter. This parameter links the landslide probability to the uncertainties of soil mechanical parameters and is used to create a physics-based probabilistic forecasting model for rainfall-induced shallow landslides. The prediction ability of this model was tested in a case study, in which simulated forecasting of landslide disasters associated with heavy rainfalls on 9 July 2013 in the Wenchuan earthquake region of Sichuan province, China, was performed. The proposed model successfully forecasted landslides in 159 of the 176 disaster points registered by the geo-environmental monitoring station of Sichuan province. Such testing results indicate that the new model can be operated in a highly efficient way and show more reliable results, attributable to its high prediction accuracy. Accordingly, the new model can be potentially packaged into a forecasting system for shallow landslides providing technological support for the mitigation of these disasters at regional scale.

A Data Centred Method to Estimate and Map Changes in the Full Distribution of Daily Precipitation and Its Exceedances

NASA Astrophysics Data System (ADS)

Chapman, S. C.; Stainforth, D. A.; Watkins, N. W.

2014-12-01

Estimates of how our climate is changing are needed locally in order to inform adaptation planning decisions. This requires quantifying the geographical patterns in changes at specific quantiles or thresholds in distributions of variables such as daily temperature or precipitation. We develop a method[1] for analysing local climatic timeseries to assess which quantiles of the local climatic distribution show the greatest and most robust changes, to specifically address the challenges presented by 'heavy tailed' distributed variables such as daily precipitation. We extract from the data quantities that characterize the changes in time of the likelihood of daily precipitation above a threshold and of the relative amount of precipitation in those extreme precipitation days. Our method is a simple mathematical deconstruction of how the difference between two observations from two different time periods can be assigned to the combination of natural statistical variability and/or the consequences of secular climate change. This deconstruction facilitates an assessment of how fast different quantiles of precipitation distributions are changing. This involves both determining which quantiles and geographical locations show the greatest change but also, those at which any change is highly uncertain. We demonstrate this approach using E-OBS gridded data[2] timeseries of local daily precipitation from specific locations across Europe over the last 60 years. We treat geographical location and precipitation as independent variables and thus obtain as outputs the pattern of change at a given threshold of precipitation and with geographical location. This is model- independent, thus providing data of direct value in model calibration and assessment. Our results identify regionally consistent patterns which, dependent on location, show systematic increase in precipitation on the wettest days, shifts in precipitation patterns to less moderate days and more heavy days, and drying across all days which is of potential value in adaptation planning. [1] S C Chapman, D A Stainforth, N W Watkins, 2013 Phil. Trans. R. Soc. A, 371 20120287; D. A. Stainforth, S. C. Chapman, N. W. Watkins, 2013 Environ. Res. Lett. 8, 034031 [2] Haylock et al. 2008 J. Geophys. Res (Atmospheres), 113, D20119

Ig heavy chain class switch recombination: mechanism and regulation

PubMed Central

Stavnezer, Janet; Schrader, Carol E.

2014-01-01

Ig heavy chain class switching occurs rapidly after activation of mature naïve B cells, resulting in a switch from expressing IgM and IgD to expression of IgG, IgE, or IgA; this switch improves the ability of antibodies to remove the pathogen that induces the humoral immune response. Class switching occurs by a deletional recombination between two different switch (S) regions, each of which is associated with a heavy chain constant (CH) region gene. Class switch recombination (CSR) is instigated by activation-induced cytidine deaminase (AID), which converts cytosines in S regions to uracils. The uracils are subsequently removed by two DNA repair pathways, resulting in mutations, single-strand DNA breaks, and the double-strand breaks required for CSR. We discuss several aspects of CSR, including how CSR is induced, CSR in B-cell progenitors, the roles for transcription and chromosomal looping in CSR, and the roles of certain DNA repair enzymes in CSR. PMID:25411432

Development of single chain variable fragment (scFv) antibodies against Xylella fastidiosa subsp. pauca by phage display.

PubMed

Yuan, Qing; Jordan, Ramon; Brlansky, Ronald H; Istomina, Olga; Hartung, John

2015-10-01

Xylella fastidiosa is a member of the gamma proteobacteria. It is fastidious, insect-vectored and xylem-limited and causes a variety of diseases, some severe, on a wide range of economically important perennial crops, including grape and citrus. Antibody based detection assays are commercially available for X. fastidiosa, and are effective at the species, but not at the subspecies level. We have made a library of scFv antibody fragments directed against X. fastidiosa subsp. pauca strain 9a5c (citrus) by using phage display technology. Antibody gene repertoires were PCR-amplified using 23 primers for the heavy chain variable region (V(H)) and 21 primers for the light chain variable region (V(L)). The V(H) and V(L) were joined by overlap extension PCR, and then the genes of the scFv library were ligated into the phage vector pKM19. The library contained 1.2×10(7) independent clones with full-length scFv inserts. In each of 3cycles of affinity-selection with 9a5c, about 1.0×10(12) phage were used for panning with 4.1×10(6), 7.1×10(6), 2.1×10(7) phage recovered after the first, second and third cycles, respectively. Sixty-six percent of clones from the final library bound X. fastidiosa 9a5c in an ELISA. Some of these scFv antibodies recognized strain 9a5c and did not recognize X. fastidiosa strains that cause Pierce's disease of grapevine. Published by Elsevier B.V.

A Methodology for Multihazards Load Combinations of Earthquake and Heavy Trucks for Bridges

PubMed Central

Wang, Xu; Sun, Baitao

2014-01-01

Issues of load combinations of earthquakes and heavy trucks are important contents in multihazards bridge design. Current load resistance factor design (LRFD) specifications usually treat extreme hazards alone and have no probabilistic basis in extreme load combinations. Earthquake load and heavy truck load are considered as random processes with respective characteristics, and the maximum combined load is not the simple superimposition of their maximum loads. Traditional Ferry Borges-Castaneda model that considers load lasting duration and occurrence probability well describes random process converting to random variables and load combinations, but this model has strict constraint in time interval selection to obtain precise results. Turkstra's rule considers one load reaching its maximum value in bridge's service life combined with another load with its instantaneous value (or mean value), which looks more rational, but the results are generally unconservative. Therefore, a modified model is presented here considering both advantages of Ferry Borges-Castaneda's model and Turkstra's rule. The modified model is based on conditional probability, which can convert random process to random variables relatively easily and consider the nonmaximum factor in load combinations. Earthquake load and heavy truck load combinations are employed to illustrate the model. Finally, the results of a numerical simulation are used to verify the feasibility and rationality of the model. PMID:24883347

Assessing the Variability of Heavy Metal Concentrations in Liquid-Solid Two-Phase and Related Environmental Risks in the Weihe River of Shaanxi Province, China

PubMed Central

Song, Jinxi; Yang, Xiaogang; Zhang, Junlong; Long, Yongqing; Zhang, Yan; Zhang, Taifan

2015-01-01

Accurate estimation of the variability of heavy metals in river water and the hyporheic zone is crucial for pollution control and environmental management. The biotoxicities and potential ecological risks of heavy metals (Cu, Zn, Pb, Cd) in a solid-liquid two-phase system were estimated using the Geo-accumulation Index, Potential Ecological Risk Assessment and Quality Standard Index methods in the Weihe River of Shaanxi Province, China. Water and sediment samples were collected from five study sites during spring, summer and winter, 2013. The dominant species in the streambed sediments were chironomids and flutter earthworm, whose bioturbation mainly ranged from 0 to 20 cm. The concentrations of heavy metals in surface water and pore water varied obviously in spring and summer. The degrees of concentration of Cu and Cd in spring and summer were higher than the U.S. water quality Criteria Maximum Concentrations. Furthermore, the biotoxicities of Pb and Zn demonstrated season-spatial variations. The concentrations of Cu, Zn, Pb and Cd in spring and winter were significantly higher than those in summer, and the pollution levels also varied obviously in different layers of the sediments. Moreover, the pollution level of Cd was the most serious, as estimated by all three assessment methods. PMID:26193293

Characteristics of occurrence of heavy rainfall events over Odisha during summer monsoon season

NASA Astrophysics Data System (ADS)

Swain, Madhusmita; Pattanayak, Sujata; Mohanty, U. C.

2018-06-01

During summer monsoon season heavy to very heavy rainfall events have been occurring over most part of India, routinely result in flooding over Indian Monsoon Region (IMR). It is worthwhile to mention that as per Geological Survey of India, Odisha is one of the most flood prone regions of India. The present study analyses the occurrence of very light (0-2.4 mm/day), light (2.5 - 15.5 mm/day), moderate (15.6 - 64.4 mm/day), heavy (64.5 - 115.4 mm/day), very heavy (115.5 - 204.4 mm/day) and extreme (≥ 204.5 mm/day) rainy days over Odisha during summer monsoon season for a period of 113 years (1901 - 2013) and a detailed study has been done for heavy-to-extreme rainy days. For this purpose, India Meteorological Department (IMD) gridded (0.25° × 0.25° lat/lon) rainfall data and the European Centre for Medium-Range Weather Forecasts (ECMWF) Re-Analysis (ERA-Interim) (0.125° × 0.125° lat/lon) datasets are used. The analysis reveals that the frequency of very light, light and moderate rainy days persists with almost constant trend, but the heavy, very heavy and extreme rainy days exhibit an increasing trend during the study period. It may be noted that more than 60% of heavy-to-extreme rainy days are observed in the month of July and August. Furthermore, during the recent period (1980-2013), there are a total of 150 extreme rainy days are observed over Odisha, out of which 47% are associated with monsoon depressions (MDs) and cyclonic storms, 41% are with lows, 2% are due to the presence of middle and upper tropospheric cyclonic circulations, 1% is due to monsoon trough and other 9% of extreme rainy days does not follow any of these synoptic conditions. Since a large (nearly half) percentage of extreme rainy days over Odisha is due to the presence of MDs, a detailed examination of MDs is illustrated in this study. Analysis reveals that there are a total of 91 MDs formed over the Bay of Bengal (BoB) during 1980 - 2013, and out of which 56 (61.5% of total MD) MDs crossed Odisha. Further spatial analysis of extreme rainfall days exhibits that the maximum frequency of extreme rainy days is present over the south west region of Odisha.

Thermochemical nonequilibrium in atomic hydrogen at elevated temperatures

NASA Technical Reports Server (NTRS)

Scott, R. K.

1972-01-01

A numerical study of the nonequilibrium flow of atomic hydrogen in a cascade arc was performed to obtain insight into the physics of the hydrogen cascade arc. A rigorous mathematical model of the flow problem was formulated, incorporating the important nonequilibrium transport phenomena and atomic processes which occur in atomic hydrogen. Realistic boundary conditions, including consideration of the wall electrostatic sheath phenomenon, were included in the model. The governing equations of the asymptotic region of the cascade arc were obtained by writing conservation of mass and energy equations for the electron subgas, an energy conservation equation for heavy particles and an equation of state. Finite-difference operators for variable grid spacing were applied to the governing equations and the resulting system of strongly coupled, stiff equations were solved numerically by the Newton-Raphson method.

Short-Range Prediction of Monsoon Precipitation by NCMRWF Regional Unified Model with Explicit Convection

NASA Astrophysics Data System (ADS)

Mamgain, Ashu; Rajagopal, E. N.; Mitra, A. K.; Webster, S.

2018-03-01

There are increasing efforts towards the prediction of high-impact weather systems and understanding of related dynamical and physical processes. High-resolution numerical model simulations can be used directly to model the impact at fine-scale details. Improvement in forecast accuracy can help in disaster management planning and execution. National Centre for Medium Range Weather Forecasting (NCMRWF) has implemented high-resolution regional unified modeling system with explicit convection embedded within coarser resolution global model with parameterized convection. The models configurations are based on UK Met Office unified seamless modeling system. Recent land use/land cover data (2012-2013) obtained from Indian Space Research Organisation (ISRO) are also used in model simulations. Results based on short-range forecast of both the global and regional models over India for a month indicate that convection-permitting simulations by the high-resolution regional model is able to reduce the dry bias over southern parts of West Coast and monsoon trough zone with more intense rainfall mainly towards northern parts of monsoon trough zone. Regional model with explicit convection has significantly improved the phase of the diurnal cycle of rainfall as compared to the global model. Results from two monsoon depression cases during study period show substantial improvement in details of rainfall pattern. Many categories in rainfall defined for operational forecast purposes by Indian forecasters are also well represented in case of convection-permitting high-resolution simulations. For the statistics of number of days within a range of rain categories between `No-Rain' and `Heavy Rain', the regional model is outperforming the global model in all the ranges. In the very heavy and extremely heavy categories, the regional simulations show overestimation of rainfall days. Global model with parameterized convection have tendency to overestimate the light rainfall days and underestimate the heavy rain days compared to the observation data.

Model elucidating the sources and formation mechanisms of severe haze pollution over Northeast mega-city cluster in China.

PubMed

Yang, Ting; Gbaguidi, Alex; Yan, Pingzhong; Zhang, Wending; Zhu, Lili; Yao, Xuefeng; Wang, Zifa; Chen, Hui

2017-11-01

Recent studies on regional haze pollution over China come up in general with strong variability of main causes of heavy polluted episodes, in linkage with local specificities, sources and pollution characteristics. This paper therefore aims at elucidating the main specific sources and formation mechanisms of observed strong haze pollution episodes over 1-15 November 2015 in Northeast region considered as one of biggest megacity clusters in China. The Northeast China mega-city cluster, including Heilong Jiang, Jilin and Liaoning provinces, is adjacent to Russia in the north, Mongolian at the west, North Korea at east, and representing key geographical location in the regional and transnational air pollution issues in China due to the presence of heavy industries and intense economic activities. The present study, based on air quality monitoring, remote sensing satellite data and sensitivity experiments carried on the Nested Air Quality Prediction Modeling System (NAQPMS), quantitatively assesses the impact of meteorological conditions and potential contributions from regional chemical transport, intensive energy combustion, illegal emission and biomass burning emissions to PM 2.5 concentration variation. The results indicate strong inversion occurrence at lower atmosphere with weak near-surface wind speed and high relative humidity, leading to PM 2.5 concentration increase of about 30-50%. Intensive energy combustion (plausibly for heating activities) and illegal emission also significantly enhance the overall PM 2.5 accumulation by 100-200 μg m -3 (60-70% increase), against 75-100 μg m -3 from the biomass burning under the northeast-southwest transport pathway, corresponding to a contribution of 10-20% to PM 2.5 concentration increase. Obviously, stagnant meteorological conditions, energy combustion, illegal emission and biomass burning are main drivers of strong haze formation and spatial distribution over Northeast China megacity cluster. In clear, much effort on emission abatement at both local and regional scales is still an urgent imperative to overcome current critical haze pollution. Copyright © 2017 The Authors. Published by Elsevier Ltd.. All rights reserved.

Contribution of ship emissions to the concentration of PM2.5: A comprehensive study using AIS data and WRF/Chem model in Bohai Rim Region, China.

PubMed

Chen, Dongsheng; Zhao, Na; Lang, Jianlei; Zhou, Ying; Wang, Xiaotong; Li, Yue; Zhao, Yuehua; Guo, Xiurui

2018-01-01

Compared with on-road vehicles, emission from ships is one of the least-regulated anthropogenic emission sources and non-negligible source of primary aerosols and gas-phase precursors of PM 2.5 . The Bohai Rim Region in China hosts dozens of large ports, two of which ranked among the top ten ports in the world. To determine the impact of ship emissions on the PM 2.5 concentrations over this region, two parts of works have been conducted in this study. First, a detailed ship emission inventory with high spatiotemporal resolution was developed based on Automatic Identification System (AIS) data. Then the WRF/Chem model was applied to modeling the impact of ship emissions by comparing two scenarios: with and without ship emissions. The results indicate that the total estimated ship emissions of SO 2 , NO X , PM 10 , PM 2.5 , CO, HC, and CO 2 from Bohai Rim Region in 2014 are 1.9×10 5 , 2.9×10 5 , 2.6×10 4 , 2.4×10 4 , 2.5×10 4 , 1.2×10 4 , and 1.3×10 7 tonnes, respectively. The modeling results indicate that the annual PM 2.5 concentrations increased by 5.9% on land areas of Bohai Rim Region (the continent within 115.2°E-124.3°E and 36.1°N-41.6°N) due to ship emissions. The contributions show distinctive seasonal variations of contributions, presenting highest in summer (12.5%) followed by spring (6.9%) and autumn (3.3%), and lowest in winter (0.9%). The contribution reaches up to 10.7% along the shoreline and down to 1.0% 200km inland. After examining the statistics of the modeling results during heavy and non-heavy haze days in July, it was found that 6 out of 9 cities around the Bohai Rim Region were observed with higher contributions from ship emissions during heavy haze days compared with non-heavy haze days. These results indicate that the impacts of ship emissions on the ambient PM 2.5 are non-negligible, especially for heavy haze days for most coastal cities in the Bohai Rim Region. Copyright © 2017 Elsevier B.V. All rights reserved.

Distribution characteristics and ecological risk assessment of toxic heavy metals and metalloid in surface water of lakes in Daqing Heilongjiang Province, China.

PubMed

Wang, Xiaodi; Zang, Shuying

2014-05-01

It is necessary to estimate heavy metal concentrations and risk in surface water for understanding the heavy metal contaminations and for sustainable protection of ecosystems and human health. To investigate the anthropogenic contribution of heavy metal accumulation surrounding an industrial city in China, the concentrations of six heavy metals, including mercury (Hg), arsenic (As), chromium (Cr), lead (Pb), copper (Cu), and cadmium (Cd) were examined; from four different regions of Daqing in autumn 2011 and winter 2012. The results showed heavy metals distributed in the industrial area at concentrations relatively higher than those in other three areas, while concentrations in the farming area and the protected area were lower. The heavy metal concentrations of water bodies in all areas, except those for Hg and As, Cu, Pb and Cr were lower than the cutoff values for the Class I water quality that was set as the highest standard to protect the national nature reserves. While Hg and As of lakes in industry region had a higher level than those in the agriculture and landscape water, the lowest allowed. The concentrations of all the heavy metals in winter were higher than in the autumn. Cu had a higher ecological risks level to freshwater organisms. The discharge of urban sewage and industrial wastewater might be a major pollutant source, thus these sources should identified before remediation efforts. Efforts are needed to protect the lakes from pollution and also to reduce environmental health risks. This study and the valuable data will pave the way for future research on these Lakes in Daqing.

Heating the polar corona by collisionless shocks: an example of cross-fertilization in space physics

NASA Astrophysics Data System (ADS)

Zimbardo, Gaetano; Nistico, Giuseppe

We propose a new model for explaining the observations of preferential heating of heavy ions in the polar solar corona. We consider that a large number of small scale shock waves can be present in the solar corona, as suggested by recent observations of polar coronal jets. The heavy ion energization mechanism is, essentially, the ion reflection off supercritical quasi-perpendicular collisionless shocks in the corona and the subsequent acceleration by the motional electric field E = -V × B. The mechanism of heavy ion reflection is based on ion gyration in the magnetic overshoot of the shock. The acceleration due to E is perpendicular to the magnetic field, giving rise to large temperature anisotropy with T⊥ T , in agreement with observations. Also, heating is more than mass proportional with respect to protons, because the heavy ion orbit is mostly upstream of the quasi-perpendicular shock foot. The observed temperature ratios between O5+ ions and protons in the polar corona, and between α particles and protons in the solar wind are easily recovered. Results of numerical simulations reproducing the heavy ion reflection will be presented. This work is an interesting example of cross-fertilization in space plasma physics: the non adiabatic heating of heavy ions comes from Speiser orbits in the magnetotail, observations of preferential heating of heavy ions at shocks comes from Ulysses data on corotating interaction regions shocks, heavy ion reflecton from a magnetic barrier is akin to the ion orbits in the Ferraro-Rosenbluth sheath considered for the magnetopause, the formation of shocks in the reconnection outflow regions comes from solar flare models, and evidence of reconnection and fast flows in the polar corona comes from Hinode and STEREO observations of coronal hole jets.

Identification of traffic-related metals and the effects of different environments on their enrichment in roadside soils along the Qinghai-Tibet highway.

PubMed

Zhang, Hua; Wang, Zhaofeng; Zhang, Yili; Ding, Mingjun; Li, Lanhui

2015-07-15

The road transportation could affect roadside soils environment detrimentally, including heavy metal enrichment. In order to identify and evaluate the enrichment of heavy metals resulted from road transportation on the Tibetan Plateau, the 11 heavy metals (V, Cr, Co, Ni, Cu, Zn, As, Cd, Rb, Pb and Tl) in the topsoil (0-10 cm depth) from four sites along the Qinghai-Tibet highway were discussed in this study. Our results indicate that heavy metals such as Cr, Cu, Zn, As, Cd and Pb are related to road transportation. The content of most of these heavy metals in roadside soils decreased exponentially with the distance from the road, as did some of the Nemero Synthesis Indexes (PN values). The contamination factor for the traffic-related metals ranged from 0.56 (no pollution) to 5.67 (considerable pollution) and the Nemero Synthesis Indexes of these heavy metals ranged from 0.80 (no pollution) to 4.49 (severe pollution). Cd was of priority concern as it had the highest contamination factor. The highest PN value for these traffic-related heavy metals was found in soils at site TTH (alpine steppe). Although transportation contributed to the high contents of these traffic-related metals in roadside environments, regional differences such as wind and the terrain also had significant relationship with their enrichment in these roadside soils. The roadside distance at which there is a potential risk to livestock and wildlife from the contamination of soils by heavy metals should be determined scientifically along the Qinghai-Tibet highway, based on the different natural environments found in the region. Copyright © 2015 Elsevier B.V. All rights reserved.

Biochemical studies on the effect of different water resources in Hail region on liver and kidney functions of rats.

PubMed

Talkhan, Ola F A; Abd Elwahab, Safaa A E; Shalapy, Ebtessam M

2016-08-01

Low concentration of a heavy metal is toxic and can be classified as one of the pollution sources. Industrial and human waste can pollute water with heavy metals and soils breaking down under the effect of acidic rain, which release heavy metals into river, streams, lakes, and ground water. Bioaccumulation of heavy metals in vital organs of the human body damages these organs, including the liver and kidney, which are the main organs for metabolism, detoxification, and excretion. The present study aims to investigate into concentrations of such heavy metals (Fe, Cu, Zn, and Pb) in both ground and tap water samples collected from different areas in Hail region, KSA. Then, this study moves forward to examine the effects of such concentrations on the biochemistry of serum in rats. In this regard, the results demonstrate the presence of significant differences (p < 0.05) in the liver function parameters, alanine aminotransferase, aspartate aminotransferase, alkaline phosphatase, total proteins, albumin, and globulin between all the studied groups that were exposed to heavy-metals-polluted water, when compared with the control group. In addition, there were significant differences (p < 0.05) in the kidney function parameters, uric acid, urea, and creatinine, when compared with the control group. Thence, and as this study indicates, heavy-metals-polluted water can cause disturbance in the liver and kidney function parameters, which highlights health risks of the water polluted with heavy metals. In this sense, the concerned authorities should regularly carry out survey and should monitor underground water, and people have to be aware of such risks.

Spatial variability of soil salinity in coastal saline soil at different scales in the Yellow River Delta, China.

PubMed

Wang, Zhuoran; Zhao, Gengxing; Gao, Mingxiu; Chang, Chunyan

2017-02-01

The objectives of this study were to explore the spatial variability of soil salinity in coastal saline soil at macro, meso and micro scales in the Yellow River delta, China. Soil electrical conductivities (ECs) were measured at 0-15, 15-30, 30-45 and 45-60 cm soil depths at 49 sampling sites during November 9 to 11, 2013. Soil salinity was converted from soil ECs based on laboratory analyses. Our results indicated that at the macro scale, soil salinity was high with strong variability in each soil layer, and the content increased and the variability weakened with increasing soil depth. From east to west in the region, the farther away from the sea, the lower the soil salinity was. The degrees of soil salinization in three deeper soil layers are 1.14, 1.24 and 1.40 times higher than that in the surface soil. At the meso scale, the sequence of soil salinity in different topographies, soil texture and vegetation decreased, respectively, as follows: depression >flatland >hillock >batture; sandy loam >light loam >medium loam >heavy loam >clay; bare land >suaeda salsa >reed >cogongrass >cotton >paddy >winter wheat. At the micro scale, soil salinity changed with elevation in natural micro-topography and with anthropogenic activities in cultivated land. As the study area narrowed down to different scales, the spatial variability of soil salinity weakened gradually in cultivated land and salt wasteland except the bare land.

Impacts of heavy groundwater pumping on hydrogeological conditions in Libya: Past and present development and future prognosis on a regional scale

NASA Astrophysics Data System (ADS)

Elgzeli, Yousef M.; Ondovčin, Tomáš; Hrkal, Zbyněk; Krásný, Jiří; Mls, Jiří

2013-06-01

Elgzeli, Y.M., Ondovčin, T., Hrkal, Z., Krasny, J. and Mls, J. 2011. Impacts of heavy groundwater pumping on hydrogeological conditions in Libya: Past and present development and future prognosis on a regional scale. Acta Geologica Polonica, 63 (2), 283-296. Warszawa. Libya, like many other regions with arid climates, suffers from inadequate water resources to cover all the needs of this rapidly developing country. Increasing amounts of water are needed to supply the population, as well as for agricultural irrigation and industrial use. As groundwater is the main water source in the country, it represents a natural resource of the highest economic and social importance. Conceptual and numerical models were implemented on a regional scale to show how the natural situation has changed following heavy groundwater abstraction during the last decades in the northwestern part of the country. The results of the numerical model indicated that the current zones of depression of the piezometric surface could have been caused by smaller withdrawn amounts than previously estimated. The differences in the assessed withdrawn groundwater volumes seem to be quite high and might have a considerable influence on the future possibilities of groundwater use in the study region.

Ice Core Reconnaissance in Siberian Altai for Mid-Latitudes Paleo-Climatic and Environmental Reconstruction

NASA Astrophysics Data System (ADS)

Aizen, V.; Aizen, E.; Kreutz, K.; Nikitin, S.; Fujita, K.; Cecil, D.

2001-12-01

Investigations in Siberian Altai permits to expand our scope from Tibet, Himalayas, Tien Shan and Pamir to the area located at the northeastern edge of the Central Asia Mountain System. Altai forms a natural barrier to the northern and western air masses and therefore affords an opportunity to develop modern paleo-climate records relating to the westerly jet stream, the Siberian High and Pacific monsoon. Moreover, Altai alpine snowice accumulation areas are appropriative for studying air pollution dynamics at the center of Eurasia, eastward from the major Former USSR air pollutants in Kazakhstan, South Siberia and Ural Mountains. During the last century Altai Mountains became extremely contaminated region by heavy metal mining, metallurgy, nuclear test in Semipalatinsk polygon and Baikonur rocket site. Our first field reconnaissance on the West Belukha snow/firn plateau at the Central Altai was carried out in July 2001. Dispute of the large Alatai Mountains glaciation, the West Belukha Plateau (49o48' N, 86o32'E, 4000-4100 m a.s.l.) is only one suitable snow accumulation site in Altai to recover ice-core paleo-climatic and environmental records that is not affected by meltwater percolation. The objective of our first reconnaissance was to find an appropriate deep drilling site by radio-echo sounding survey, to recover shallow ice-core, to identify the annual snow accumulation rate, major ions, heavy metals, radio nuclides and oxygen isotopes level distribution. During 6 days of work on the Plateau, a 22 m shallow firn/ice core has been recovered by PICO hand auger at elevation 4050 m where the results of radio-echo sounding suggests about 150 m ice thickness. In addition to the firn/ice core recovery, five 2.5 meter snow pits were sampled for physical statigraphy, major ions, trace element, and heavy metals analysis to assess spatial variability of the environmental impact in this region. Four automatic snow gauges were installed near proposed deep ice coring site for year around records. The seasonal accumulation at the drilling site was ranged from 250 to 300 ?? with density of 0.34 - 0.40 g cm-3. The ice-core stratigraphy analysis has shown that accumulation area seems to lie in the cold infiltration-recrystallization zone. Geochemical analysis of the shallow ice core, snow pit samples collecting during the 2001 field research will be discussed along with meteorological and synoptic data collected at the nearest to Belukha Plateau Akkem, (2050 m) and Kara -Tyurek (3600 ?) stations. A preliminary result has revealed that variability of elementary synoptic processes over the region impact on the amount of precipitation. North Atlantic Oscillation and West Pacific Oscillation indices have inverse associations with average amount of precipitation in Siberia where Altai is located. >http://www.icess.ucsb.edu/%7eaizen/aizen.html

Beyond CDR-grafting: Structure-guided humanization of framework and CDR regions of an anti-myostatin antibody.

PubMed

Apgar, James R; Mader, Michelle; Agostinelli, Rita; Benard, Susan; Bialek, Peter; Johnson, Mark; Gao, Yijie; Krebs, Mark; Owens, Jane; Parris, Kevin; St Andre, Michael; Svenson, Kris; Morris, Carl; Tchistiakova, Lioudmila

2016-10-01

Antibodies are an important class of biotherapeutics that offer specificity to their antigen, long half-life, effector function interaction and good manufacturability. The immunogenicity of non-human-derived antibodies, which can be a major limitation to development, has been partially overcome by humanization through complementarity-determining region (CDR) grafting onto human acceptor frameworks. The retention of foreign content in the CDR regions, however, is still a potential immunogenic liability. Here, we describe the humanization of an anti-myostatin antibody utilizing a 2-step process of traditional CDR-grafting onto a human acceptor framework, followed by a structure-guided approach to further reduce the murine content of CDR-grafted antibodies. To accomplish this, we solved the co-crystal structures of myostatin with the chimeric (Protein Databank (PDB) id 5F3B) and CDR-grafted anti-myostatin antibody (PDB id 5F3H), allowing us to computationally predict the structurally important CDR residues as well as those making significant contacts with the antigen. Structure-based rational design enabled further germlining of the CDR-grafted antibody, reducing the murine content of the antibody without affecting antigen binding. The overall "humanness" was increased for both the light and heavy chain variable regions.

Beyond CDR-grafting: Structure-guided humanization of framework and CDR regions of an anti-myostatin antibody

PubMed Central

Apgar, James R.; Mader, Michelle; Agostinelli, Rita; Benard, Susan; Bialek, Peter; Johnson, Mark; Gao, Yijie; Krebs, Mark; Owens, Jane; Parris, Kevin; St. Andre, Michael; Svenson, Kris; Morris, Carl; Tchistiakova, Lioudmila

2016-01-01

ABSTRACT Antibodies are an important class of biotherapeutics that offer specificity to their antigen, long half-life, effector function interaction and good manufacturability. The immunogenicity of non-human-derived antibodies, which can be a major limitation to development, has been partially overcome by humanization through complementarity-determining region (CDR) grafting onto human acceptor frameworks. The retention of foreign content in the CDR regions, however, is still a potential immunogenic liability. Here, we describe the humanization of an anti-myostatin antibody utilizing a 2-step process of traditional CDR-grafting onto a human acceptor framework, followed by a structure-guided approach to further reduce the murine content of CDR-grafted antibodies. To accomplish this, we solved the co-crystal structures of myostatin with the chimeric (Protein Databank (PDB) id 5F3B) and CDR-grafted anti-myostatin antibody (PDB id 5F3H), allowing us to computationally predict the structurally important CDR residues as well as those making significant contacts with the antigen. Structure-based rational design enabled further germlining of the CDR-grafted antibody, reducing the murine content of the antibody without affecting antigen binding. The overall “humanness” was increased for both the light and heavy chain variable regions. PMID:27625211

An intercomparison of observational precipitation data sets over Northwest India during winter

NASA Astrophysics Data System (ADS)

Nageswararao, M. M.; Mohanty, U. C.; Ramakrishna, S. S. V. S.; Dimri, A. P.

2018-04-01

Winter (DJF) precipitation over Northwest India (NWI) is very important for the cultivation of Rabi crops. Thus, an accurate estimation of high-resolution observations, evaluation of high-resolution numerical models, and understanding the local variability trends are essential. The objective of this study is to verify the quality of a new high spatial resolution (0.25° × 0.25°) gridded daily precipitation data set of India Meteorological Department (IMD1) over NWI during winter. An intercomparison with four existing precipitation data sets at 0.5° × 0.5° of IMD (IMD2), 1° × 1° of IMD (IMD3), 0.25° × 0.25° of APHRODITE (APRD1), and 0.5° × 0.5° of APHRODITE (APRD1) resolution during a common period of 1971-2003 is done. The evaluation of data quality of these five data sets against available 26 station observations is carried out, and the results clearly indicate that all the five data sets reasonably agreed with the station observation. However, the errors are relatively more in all the five data sets over Jammu and Kashmir-related four stations (Srinagar, Drass, Banihal top, and Dawar), while these errors are less in the other stations. It may be due to the lack of station observations over the region. The quality of IMD1 data set over NWI for winter precipitation is reasonably well than the other data sets. The intercomparison analysis suggests that the climatological mean, interannual variability, and coefficient of variation from IMD1 are similar with other data sets. Further, the analysis extended to the India meteorological subdivisions over the region. This analysis indicates overestimation in IMD3 and underestimation in APRD1 and APRD2 over Jammu and Kashmir, Himachal Pradesh, and NWI as a whole, whereas IMD2 is closer to IMD1. Moreover, all the five data sets are highly correlated (>0.5) among them at 99.9% confidence level for all subdivisions. It is remarkably noticed that multicategorical (light precipitation, moderate precipitation, heavy precipitation, and very heavy precipitation) skill score of accuracy (>0.8) for the four data sets against IMD1 is good for all the subdivisions as well as NWI and is more in IMD2. IMD1 performs well in capturing the relationships of winter precipitation with climate indices such as Nino 3.4 region sea surface temperature, Southern Oscillation Index, Arctic Oscillation, and North Atlantic Oscillation. The results conclude that IMD1 is useful to understand the variability trends at the local climate scale and its global teleconnections.

Characterizing heavy metal build-up on urban road surfaces: implication for stormwater reuse.

PubMed

Liu, An; Liu, Liang; Li, Dunzhu; Guan, Yuntao

2015-05-15

Stormwater reuse is increasingly popular in the worldwide. In terms of urban road stormwater, it commonly contains toxic pollutants such as heavy metals, which could undermine the reuse safety. The research study investigated heavy metal build-up characteristics on urban roads in a typical megacity of South China. The research outcomes show the high variability in heavy metal build-up loads among different urban road sites. The degree of traffic congestion and road surface roughness was found to exert a more significant influence on heavy metal build-up rather than traffic volume. Due to relatively higher heavy metal loads, stormwater from roads with more congested traffic conditions or rougher surfaces might be suitable for low-water-quality required activities while the stormwater from by-pass road sections could be appropriate for relatively high-water-quality required purposes since the stormwater could be relatively less polluted. Based on the research outcomes, a decision-making process for heavy metals based urban road stormwater reuse was proposed. The new finding highlights the importance to undertaking a "fit-for-purpose" road stormwater reuse strategy. Additionally, the research results can also contribute to enhancing stormwater reuse safety. Copyright © 2015 Elsevier B.V. All rights reserved.

Vacuum tube operation analysis under multi-harmonic driving and heavy beam loading effect in J-PARC RCS

NASA Astrophysics Data System (ADS)

Yamamoto, M.; Nomura, M.; Shimada, T.; Tamura, F.; Hara, K.; Hasegawa, K.; Ohmori, C.; Toda, M.; Yoshii, M.; Schnase, A.

2016-11-01

An rf cavity in the J-PARC RCS not only covers the frequency range of a fundamental acceleration pattern but also generates multi-harmonic rf voltage because it has a broadband impedance. However, analyzing the vacuum tube operation in the case of multi-harmonics is very complicated because many variables must be solved in a self-consistent manner. We developed a method to analyze the vacuum tube operation using a well-known formula and which includes the dependence on anode current for some variables. The calculation method is verified with beam tests, and the results indicate that it is efficient under condition of multi-harmonics with a heavy beam loading effect.

Cerebellar subjects show impaired adaptation of anticipatory EMG during catching.

PubMed

Lang, C E; Bastian, A J

1999-11-01

We evaluated the role of the cerebellum in adapting anticipatory muscle activity during a multijointed catching task. Individuals with and without cerebellar damage caught a series of balls of different weights dropped from above. In Experiment 1 (light-heavy-light), each subject was required to catch light balls (baseline phase), heavy balls (adaptation phase), and then light balls again (postadaptation phase). Subjects were not told when the balls would be switched, and they were required to keep their hand within a vertical spatial "window" during the catch. During the series of trials, we measured three-dimensional (3-D) position and electromyogram (EMG) from the catching arm. We modeled the adaptation process using an exponential decay function; this model allowed us to dissociate adaptation from performance variability. Results from the position data show that cerebellar subjects did not adapt or adapted very slowly to the changed ball weight when compared with the control subjects. The cerebellar group required an average of 30.9 +/- 8.7 trials (mean +/- SE) to progress approximately two-thirds of the way through the adaptation compared with 1.7 +/- 0.2 trials for the control group. Only control subjects showed a negative aftereffect indicating storage of the adaptation. No difference in performance variability existed between the two groups. EMG data show that control subjects increased their anticipatory muscle activity in the flexor muscles of the arm to control the momentum of the ball at impact. Cerebellar subjects were unable to differentially increase the anticipatory muscle activity across three joints to perform the task successfully. In Experiment 2 (heavy-light-heavy), we tested to see whether the rate of adaptation changed when adapting to a light ball versus a heavy ball. Subjects caught the heavy balls (baseline phase), the light balls (adaptation phase), and then heavy balls again (postadaptation phase). Comparison of rates of adaptation between Experiment 1 and Experiment 2 showed that the rate of adaptation was unchanged whether adapting to a light ball or a heavy ball. Given these findings, we conclude that the cerebellum is important in generating the appropriate anticipatory muscle activity across multiple muscles and modifying it in response to changing demands though trial-and-error practice.

The Extent of Heavy Metal Pollution and Their Potential Health Risk in Topsoils of the Massively Urbanized District of Shanghai.

PubMed

Jaffar, Syed Taseer Abbas; Luo, Fan; Ye, Rong; Younas, Hassan; Hu, Xue-Feng; Chen, Long-Zhu

2017-10-01

Urbanization and industrialization increase the concentrations of heavy metals in soils, which affect human health. A total of 127 topsoil samples were collected from the massively urbanized and industrialized district of Shanghai: Baoshan District. The sampling sites were isolated based on the land-use practice: industrial area, roadside area, residential area, and agricultural area. The absolute concentrations of heavy metals (Zn, Cr, Ni, Mn, Cu, Pb, and Cd) were determined using atomic absorption spectrometry and compared with Shanghai and the National soil background values. The geoaccumulation index (Igeo) and Nemerow pollution index were used to determine the existence and severity of the pollution of heavy metals. Enrichment factor (EF) analysis, spatial variability of pollution, and multivariate statistical analyses also were employed to determine the anthropogenic loading of heavy metals, their spatial dependency, and correlation among their sources, respectively. Moreover, potential ecological risk and human health risk [carcinogenic risk (RI) and noncarcinogenic hazard (HI)] were evaluated. The average concentration of all the metals (accounted as 229, 128, 56, 719, 55, 119, and 0.3 mg kg -1 for Zn, Cr, Ni, Mn, Cu, Pb, and Cd, respectively) was many folds higher than the background values. The indices depicted that the pollution exists in all the sites and severity decreases in the following order: industrial soils > roadside soil > residential soils > agricultural soils. However, Zn, Pb, and Cd showed high levels of pollution in all the soils. The EF values suggested that the majority of heavy metals are anthropogenically loaded; spatial variability showed that the pollution is more concentrated in Songnan town; Pearson's correlation, principal component analysis (PCA), and cluster analysis suggested different sources of origin for the majority of the heavy metals. RI of Cr and Pb ranged between 2.8E-04 and 2.7E-07. However, HI was site-specific (only for Cr, Pb, Mn), and most of the sites were in Songnan town. This study could be used as a significant piece of information for management purposes to prevent heavy metal pollution and to protect human health.

Assessment of Soil Water Composition in the Northern Taiga Coniferous Forests of Background Territories in the Industrially Developed Region

NASA Astrophysics Data System (ADS)

Lukina, N. V.; Ershov, V. V.; Gorbacheva, T. T.; Orlova, M. A.; Isaeva, L. G.; Teben'kova, D. N.

2018-03-01

The composition of soil water under coniferous forests of Murmansk oblast—an industrially developed region of northern Russia—was investigated. The studied objects were dwarf-shrub-green-moss spruce forests and dwarf-shrub-lichen pine forests on Al-Fe-humus podzols ( Albic Rustic Podzols) that are widespread in the boreal zone. The concentrations and removal of organic carbon performing the most important biogeochemical and pedogenic functions were estimated. The results proved significant intra- and inter-biogeocenotic variability in the composition of atmospheric depositions and soil water. Carbon removal with soil water from organic and mineral horizons within elementary biogeoareas (EBGA) under tree crowns was 2-5 and 2-3 times (in some cases, up to 10 times) greater than that in the intercrown areas, respectively. The lowest critical level of mineral nitrogen (0.2 mg/L) was, as a rule, exceeded in tree EBGAs contrary to intercrown areas. Concentrations of sulfates and heavy metals in water of tree EBGA were 3-5 times greater than those in inter-crown areas. Significant inter-biogeocenotic variations related to differences in the height of trees and tree stand density were found. It is argued that adequate characterization of biochemical cycles and assessment of critical levels of components in soil water of forest ecosystems should be performed with due account for the intra- and inter-biogeocenotic variability.

Variable Oakleaf Caterpillar

Treesearch

Louis F. Wilson; Gordon A. Surgeoner

1979-01-01

The variable oakleaf caterpillar (Heterocampa manteo (Dbldy.)) is a common insect in deciduous forests of Eastern North America. It has been recorded from most of the Eastern Canadian Provinces and most of the States in the East to North Dakota in the West and south to eastern Texas, Louisiana, and Mississippi. Heavy defoliations of hosts may occur anywhere within this...

Heavy Drinking in College Students Is Associated with Accelerated Gray Matter Volumetric Decline over a 2 Year Period

PubMed Central

Meda, Shashwath A.; Dager, Alecia D.; Hawkins, Keith A.; Tennen, Howard; Raskin, Sarah; Wood, Rebecca M.; Austad, Carol S.; Fallahi, Carolyn R.; Pearlson, Godfrey D.

2017-01-01

Background: Heavy and/or harmful alcohol use while in college is a perennial and significant public health issue. Despite the plethora of cross-sectional research suggesting deleterious effects of alcohol on the brain, there is a lack of literature investigating the longitudinal effects of alcohol consumption on the adolescent brain. We aim to probe the longitudinal effects of college drinking on gray matter change in students during this crucial neurodevelopmental period. Methods: Data were derived from the longitudinal Brain and Alcohol Research in College Students (BARCS) study of whom a subset underwent brain MRI scans at two time points 24 months apart. Students were young adults with a mean age at baseline of about 18.5 years. Based on drinking metrics assessed at both baseline and followup, subjects were classified as sustained abstainers/light drinkers (N = 45) or sustained heavy drinkers (N = 84) based on criteria established in prior literature. Gray matter volumetric change (GMV-c) maps were derived using the longitudinal DARTEL pipeline as implemented in SPM12. GMV-c maps were then subjected to a 1-sample and 2-sample t-test in SPM12 to determine within- and between-group GMV-c differences in drinking groups. Supplementary between-group differences were also computed at baseline only. Results: Within-group analysis revealed significant decline in GMV in both groups across the 2 year followup period. However, tissue loss in the sustained heavy drinking group was more significant, larger per region, and more widespread across regions compared to abstainers/light drinkers. Between-group analysis confirmed the above and showed a greater rate of GMV-c in the heavy drinking group in several brain regions encompassing inferior/medial frontal gyrus, parahippocampus, and anterior cingulate. Supplementary analyses suggest that some of the frontal differences existed at baseline and progressively worsened. Conclusion: Sustained heavy drinking while in college was associated with accelerated GMV decline in brain regions involved with executive functioning, emotional regulation, and memory, which are critical to everyday life functioning. Areas of significant GMV decreases also overlapped largely with brain reward and stress systems implicated in addictive behavior. PMID:29033801

Terrestrial invasion of pomatiopsid gastropods in the heavy-snow region of the Japanese Archipelago

PubMed Central

2011-01-01

Background Gastropod mollusks are one of the most successful animals that have diversified in the fully terrestrial habitat. They have evolved terrestrial taxa in more than nine lineages, most of which originated during the Paleozoic or Mesozoic. The rissooidean gastropod family Pomatiopsidae is one of the few groups that have evolved fully terrestrial taxa during the late Cenozoic. The pomatiopsine diversity is particularly high in the Japanese Archipelago and the terrestrial taxa occur only in this region. In this study, we conducted thorough samplings of Japanese pomatiopsid species and performed molecular phylogenetic analyses to explore the patterns of diversification and terrestrial invasion. Results Molecular phylogenetic analyses revealed that Japanese Pomatiopsinae derived from multiple colonization of the Eurasian Continent and that subsequent habitat shifts from aquatic to terrestrial life occurred at least twice within two Japanese endemic lineages. Each lineage comprises amphibious and terrestrial species, both of which are confined to the mountains in heavy-snow regions facing the Japan Sea. The estimated divergence time suggested that diversification of these terrestrial lineages started in the Late Miocene, when active orogenesis of the Japanese landmass and establishment of snowy conditions began. Conclusions The terrestrial invasion of Japanese Pomatiopsinae occurred at least twice beside the mountain streamlets of heavy-snow regions, which is considered the first case of this event in the area. Because snow coverage maintains stable temperatures and high humidity on the ground surface, heavy-snow conditions may have paved the way for these organisms from freshwater to land via mountain streamlets by preventing winter desiccation in mountain valleys. The fact that the terrestrialization of Pomatiopsidae occurred only in year-round wet environments, but not in seasonally dried regions, provides new insight into ancient molluscan terrestrialization. PMID:21545707

Hypsometric control on glacier mass balance sensitivity in Alaska and northwest Canada

NASA Astrophysics Data System (ADS)

McGrath, D.; Sass, L.; O'Neel, S.; Arendt, A.; Kienholz, C.

2017-03-01

Glacier hypsometry provides a first-order approach for assessing a glacier's response to climate forcings. We couple the Randolph Glacier Inventory to a suite of in situ observations and climate model output to examine potential change for the ˜27,000 glaciers in Alaska and northwest Canada through the end of the 21st century. By 2100, based on Representative Concentration Pathways (RCPs) 4.5-8.5 forcings, summer temperatures are predicted to increase between +2.1 and +4.6°C, while solid precipitation (snow) is predicted to decrease by -6 to -11%, despite a +9 to +21% increase in total precipitation. Snow is predicted to undergo a pronounced decrease in the fall, shifting the start of the accumulation season back by ˜1 month. In response to these forcings, the regional equilibrium line altitude (ELA) may increase by +105 to +225 m by 2100. The mass balance sensitivity to this increase is highly variable, with the most substantive impact for glaciers with either limited elevation ranges (often small (<1 km2) glaciers, which account for 80% of glaciers in the region) or those with top-heavy geometries, like icefields. For more than 20% of glaciers, future ELAs, given RCP 6.0 forcings, will exceed the maximum elevation of the glacier, resulting in their eventual demise, while for others, accumulation area ratios will decrease by >60%. Our results highlight the first-order control of hypsometry on individual glacier response to climate change, and the variability that hypsometry introduces to a regional response to a coherent climate perturbation.

Ecological risk and pollution history of heavy metals in Nansha mangrove, South China.

PubMed

Wu, Qihang; Tam, Nora F Y; Leung, Jonathan Y S; Zhou, Xizhen; Fu, Jie; Yao, Bo; Huang, Xuexia; Xia, Lihua

2014-06-01

Owing to the Industrial Revolution in the late 1970s, heavy metal pollution has been regarded as a serious threat to mangrove ecosystems in the region of the Pearl River Estuary, potentially affecting human health. The present study attempted to characterize the ecological risk of heavy metals (Cd, Cr, Cu, Mn, Ni, Pb and Zn) in Nansha mangrove, South China, by estimating their concentrations in the surface sediment. In addition, the pollution history of heavy metals was examined by determining the concentrations of heavy metals along the depth gradient. The phytoremediation potential of heavy metals by the dominant plants in Nansha mangrove, namely Sonneratia apetala and Cyperus malaccensis, was also studied. Results found that the surface sediment was severely contaminated with heavy metals, probably due to the discharge of industrial sewage into the Pearl River Estuary. Spatial variation of heavy metals was generally unobvious. The ecological risk of heavy metals was very high, largely due to Cd contamination. All heavy metals, except Mn, decreased with depth, indicating that heavy metal pollution has been deteriorating since 1979. Worse still, the dominant plants in Nansha mangrove had limited capability to remove the heavy metals from sediment. Therefore, we propose that immediate actions, such as regulation of discharge standards of industrial sewage, should be taken by the authorities concerned to mitigate the ecological risk posed by heavy metals. Copyright © 2014 Elsevier Inc. All rights reserved.

Cargo selection by specific kinesin light chain 1 isoforms.

PubMed

Woźniak, Marcin J; Allan, Victoria J

2006-11-29

Kinesin-1 drives the movement of diverse cargoes, and it has been proposed that specific kinesin light chain (KLC) isoforms target kinesin-1 to these different structures. Here, we test this hypothesis using two in vitro motility assays, which reconstitute the movement of rough endoplasmic reticulum (RER) and vesicles present in a Golgi membrane fraction. We generated GST-tagged fusion proteins of KLC1B and KLC1D that included the tetratricopeptide repeat domain and the variable C-terminus. We find that preincubation of RER with KLC1B inhibits RER motility, whereas KLC1D does not. In contrast, Golgi fraction vesicle movement is inhibited by KLC1D but not KLC1B reagents. Both RER and vesicle movement is inhibited by preincubation with the GST-tagged C-terminal domain of ubiquitous kinesin heavy chain (uKHC), which binds to the N-terminal domain of uKHC and alters its interaction with microtubules. We propose that although the TRR domains are required for cargo binding, it is the variable C-terminal region of KLCs that are vital for targeting kinesin-1 to different cellular structures.

Cargo selection by specific kinesin light chain 1 isoforms

PubMed Central

Woźniak, Marcin J; Allan, Victoria J

2006-01-01

Kinesin-1 drives the movement of diverse cargoes, and it has been proposed that specific kinesin light chain (KLC) isoforms target kinesin-1 to these different structures. Here, we test this hypothesis using two in vitro motility assays, which reconstitute the movement of rough endoplasmic reticulum (RER) and vesicles present in a Golgi membrane fraction. We generated GST-tagged fusion proteins of KLC1B and KLC1D that included the tetratricopeptide repeat domain and the variable C-terminus. We find that preincubation of RER with KLC1B inhibits RER motility, whereas KLC1D does not. In contrast, Golgi fraction vesicle movement is inhibited by KLC1D but not KLC1B reagents. Both RER and vesicle movement is inhibited by preincubation with the GST-tagged C-terminal domain of ubiquitous kinesin heavy chain (uKHC), which binds to the N-terminal domain of uKHC and alters its interaction with microtubules. We propose that although the TRR domains are required for cargo binding, it is the variable C-terminal region of KLCs that are vital for targeting kinesin-1 to different cellular structures. PMID:17093494

Analysis of chronic lymphotic leukemia transcriptomic profile: differences between molecular subgroups.

PubMed

Jantus Lewintre, Eloisa; Reinoso Martín, Cristina; Montaner, David; Marín, Miguel; José Terol, María; Farrás, Rosa; Benet, Isabel; Calvete, Juan J; Dopazo, Joaquín; García-Conde, Javier

2009-01-01

B cell chronic lymphocytic leukemia (CLL) is a lymphoproliferative disorder with a variable clinical course. Patients with unmutated IgV(H) gene show a shorter progression-free and overall survival than patients with immunoglobulin heavy chain variable regions (IgV(H)) gene mutated. In addition, BCL6 mutations identify a subgroup of patients with high risk of progression. Gene expression was analysed in 36 early-stage patients using high-density microarrays. Around 150 genes differentially expressed were found according to IgV(H) mutations, whereas no difference was found according to BCL6 mutations. Functional profiling methods allowed us to distinguish KEGG and gene ontology terms showing coordinated gene expression changes across subgroups of CLL. We validated a set of differentially expressed genes according to IgV(H) status, scoring them as putative prognostic markers in CLL. Among them, CRY1, LPL, CD82 and DUSP22 are the ones with at least equal or superior performance to ZAP70 which is actually the most used surrogate marker of IgV(H) status.

Myosin heavy chain composition in the rat diaphragm - Effect of age and exercise training

NASA Technical Reports Server (NTRS)

Gosselin, Luc E.; Betlach, Michael; Vailas, Arthur C.; Greaser, Marion L.; Thomas, D. P.

1992-01-01

The effects of aging and exercise training on the myosin heavy chain (MHC) composition were determined in both the costal and crural diaphragm regions of female Fischer 344 rats. Treadmill running at 75 percent maximal oxygen consumption resulted in similar increases in plantaris muscle citrate synthase activity in both young (5 mo) and old (23mo) trained animals (P less than 0.05). It was found that the ratio of fast to slow MHC was significantly higher (P less than 0.005) in the crural compared with costal diaphragm region in both age groups. A significant age-related increase in persentage of slow MHC was observed in both diaphragm regions. The relative proportion of slow MHC in either costal or crural region was not changed by exercise training.

Experimental Highlights: Heavy Quark Physics in Heavy-Ion Collisions at RHIC

DOE PAGES

Nouicer, Rachid

2017-03-22

The discovery at RHIC of large high-p T suppression and flow of electrons from heavy quarks flavors have altered our view of the hot and dense matter formed in central Au + Au collisions at √s NN = 200 GeV. These results suggest a large energy loss and flow of heavy quarks in the hot, dense matter. In recent years, the RHIC experiments upgraded the detectors; (1) PHENIX Collaboration installed silicon vertex tracker (VTX) at midrapidity region and forward silicon vertex tracker (FVTX) at the forward rapidity region, and (2) STAR Collaboration installed the heavy flavor tracker (HFT) and themore » muon telescope detector (MTD) both at the mid-rapidity region. The PHENIX experiments established measurements of ψ (1S ) and ψ (2S ) production as a function of system size, p + p, p + Al, p + Au, and 3He + Au collisions at √s NN = 200 GeV. In p/ 3He + A collisions at forward rapidity, we observe no difference in the ψ (2S )/ψ (1S ) ratio relative to p + p collisions. At backward rapidity, where the comoving particle density is higher, we find that the ψ (2S ) is preferentially suppressed by a factor of two. STAR Collaboration presents the first J/ ψ measurements in the di-muon decay channel in Au + Au at √s NN = 200 GeV at mid-rapidity. In conclusion, we observe a clear J/ψ R AA suppression and qualitatively well described by transport models, including dissociation and regeneration simultaneously.« less

Accumulation and distribution of heavy metals in sediments and fish in the Kola Peninsula lakes under airborne contamination

DOE Office of Scientific and Technical Information (OSTI.GOV)

Dauvalter, V.A.; Kashulin, N.A.; Lukin, A.A.

1996-12-31

The copper-nickel smelter complexes of Kola Peninsula are powerful sources of atmospheric contamination by heavy metals (Ni, Cu, Co, Cd, etc.) and acidic oxides (SO{sub 2}) deposited in precipitation and caused negative effects on local freshwater ecosystems. The rise of background levels occurs over large areas in the region. The aim of the investigations is to assess effects of the air contamination on lake ecosystems at different distances (from 15 to 120 km) from one of the main heavy metal pollution sources of the Kola Peninsula - smelters of the Pechenganickel Company. Negative effects of air pollution by the smeltersmore » on the freshwater ecosystems were recorded. Lake sediments accumulate very intensively heavy metals. Heavy metal contamination factors calculated as the quotient of concentration from the uppermost (0-1 cm) sediment to the mean preindustrial background value (concentrations from 20-30 cm sediment layers) for the investigated region reach up 120 for Ni and 76 for Cu in the lakes within a distance of 40 km from the smelters. The lakes in this region have very high contamination degree according classification by Hakanson (1980). Concentrations of Ni in organs and tissues of all studied fishes (whitefish, pike, perch, arctic char, brown trout) were considerably higher in the investigated lakes than in remote unpolluted lakes. There is tight positive correlation between Ni concentrations in surficial sediment (0-1 cm) and fish kidney (r = +0.854), as well as between values of contamination degree and Ni content in fish (r = +0.871).« less

[Risk Assessment of Heavy Metal Contamination in Farmland Soil in Du'an Autonomous County of Guangxi Zhuang Autonomous Region, China].

PubMed

Wu, Yang; Yang, Jun; Zhou, Xiao-yong; Lei, Mei; Gao, Ding; Qiao, Peng-wei; Du, Guo-dong

2015-08-01

For a comprehensive understanding of the pollution characteristics and ecological risk of heavy metals of farmland soil in Du'an Autonomous County of Guangxi Zhuang Autonomous Region, China, this study evaluated the cadmium (Cd), arsenic (As), nickel (Ni), zinc (Zn), chromium (Cr), antimony (Sb), copper (Cu) and lead ( Pb) pollution situation using the single factor index, the Nemerow pollution index and the Hakanson ecological risk index. The results showed that heavy-metal pollution of farmland soil in Du'an County was serious. 74.6% of the soil samples had heavy metals concentrations higher than the Grade II of National Soil Environmental Quality Standard (GB 15618-1995). The over standard rates of Cd, As, Ni, Zn, Cr, Sb, Cu, Pb were 70.6%, 42.9%, 34.9%, 19.8%, 19.6%, 2.94%, 1.59%, 0.79%, respectively. Cd and As were the main contaminants in Du'an County, the pollution was far more serious than those of the national and Guangxi Zhuang Autonomous Region. In terms of the ecological risk, heavy metals of farmland soil in Du'an County showed a "middle" ecological risk, with Cd accounting for 88% of the total ecological risk. The north-west of Jiudu Town and the zone between Bao'an Town and Dongmiao Town were two areas with high ecological risk in Du'an County. The contamination of farmland soils in Du'an County was caused by two main sources, whereas the pollution of As and Sb of farmland soils near Diaojiang River was mainly caused by the upstream mining industry.

A teleconnection between subtropical convection and higher latitude wave activity in the Atlantic

NASA Astrophysics Data System (ADS)

Cruz, Antonio DeJesus

Rossby waves are waves in potential vorticity that propagate along the extratropical tropopause and can be impacted by the advection of low-PV air originating from the subtropics. In this study, the subtropical precipitation influence on the extratropical Rossby wave activity during the Atlantic winter season is investigated for a ten year period. Using both TRMM and TIGGE 12-Hr forecasted precipitation data, heavy precipitation events were identified near the footprints regions of warm conveyor belts in the northern Atlantic, specifically in the Gulf of Mexico and Bermuda region. The extratropical Rossby waves were then analyzed using PV on a 320K surface. By use of wavelet transforms, the amplitude of the Rossby waves were analyzed as a function of wavelength and longitude. The interaction between a single heavy precipitation event and the extratropical Rossby waves was examined for the days preceding and the week following the event. A climatological analysis of heavy precipitation events was conducted on the winter seasons from 2006 - 2015. Case study and climatological analysis identified the following: A ridge in the Northern Atlantic undergoes amplification downstream of the heavy precipitation event in the days following the event. A southerly flow, likely associated with a warm conveyor belt, connects the region of the heavy precipitation event and the extratropical tropopause. The interaction was most prominent during the late winter season and during the heaviest of precipitation events. The teleconnection identified in this study highlights a mechanism by which cloud-scale subtropical precipitation is connected to synoptic scale extratropical dynamics in the Atlantic.

Understanding climate variability and global climate change using high-resolution GCM simulations

NASA Astrophysics Data System (ADS)

Feng, Xuelei

In this study, three climate processes are examined using long-term simulations from multiple climate models with increasing horizontal resolutions. These simulations include the European Center for Medium-range Weather Forecasts (ECMWF) atmospheric general circulation model (AGCM) runs forced with observed sea surface temperatures (SST) (the Athena runs) and a set of coupled ocean-atmosphere seasonal hindcasts (the Minerva runs). Both sets of runs use different AGCM resolutions, the highest at 16 km. A pair of the Community Climate System Model (CCSM) simulations with ocean general circulation model (OGCM) resolutions at 100 and 10 km are also examined. The higher resolution CCSM run fully resolves oceanic mesoscale eddies. The resolution influence on the precipitation climatology over the Gulf Stream (GS) region is first investigated. In the Athena simulations, the resolution increase generates enhanced mean GS precipitation moderately in both large-scale and sub-scale rainfalls in the North Atlantic, with the latter more tightly confined near the oceanic front. However, the non-eddy resolving OGCM in the Minerva runs simulates a weaker oceanic front and weakens the mean GS precipitation response. On the other hand, an increase in CCSM oceanic resolutions from non-eddy-resolving to eddy resolving regimes greatly improves the model's GS precipitation climatology, resulting in both stronger intensity and more realistic structure. Further analyses show that the improvement of the GS precipitation climatology due to resolution increases is caused by the enhanced atmospheric response to an increased SST gradient near the oceanic front, which leads to stronger surface convergence and upper level divergence. Another focus of this study is on the global warming impacts on precipitation characteristic changes using the high-resolution Athena simulations under the SST forcing from the observations and a global warming scenario. As a comparison, results from the coarse resolution simulation are also analyzed to examine the dependence on resolution. The increasing rates of globally averaged precipitation amount for the high and low resolution simulations are 1.7%/K-1 and 1.8%/K-1, respectively. The sensitivities for heavy, moderate, light and drizzle rain are 6.8, -1.2, 0.0, 0.2%/K-1 for low and 6.3, -1.5, 0.4, -0.2%/K -1 for high resolution simulations. The number of rainy days decreases in a warming scenario, by 3.4 and 4.2 day/year-1, respectively. The most sensitive response of 6.3-6.8%/K-1 for the heavy rain approaches that of the 7%/K-1 for the Clausius-Clapeyron scaling limit. During the twenty-first century simulation, the increases in precipitation are larger over high latitude and wet regions in low and mid-latitudes. Over the dry regions, such as the subtropics, the precipitation amount and frequency decrease. There is a higher occurrence of low and heavy rain from the tropics to mid-latitudes at the expense of the decreases in the frequency of moderate rain. In the third part, the inter-annual variability of the northern hemisphere storm tracks is examined. In the Athena simulations, the leading modes of the observed storm track variability are reproduced realistically by all runs. In general, the fluctuations of the model storm tracks in the North Pacific and Atlantic basins are largely independent of each other. Within each basin, the variations are characterized by the intensity change near the climatological center and the meridional shift of the storm track location. These two modes are associated with major teleconnection patterns of the low frequency atmospheric variations. These model results are not sensitive to resolution. Using the Minerva hindcast initialized in November, it is shown that a portion of the winter (December-January) storm track variability is predictable, mainly due to the influences of the atmospheric wave trains induced by the El Nino and Southern Oscillation.

Source-specific speciation profiles of PM2.5 for heavy metals and their anthropogenic emissions in China.

PubMed

Liu, Yayong; Xing, Jia; Wang, Shuxiao; Fu, Xiao; Zheng, Haotian

2018-08-01

Heavy metals are concerned for its adverse effect on human health and long term burden on biogeochemical cycling in the ecosystem. In this study, a provincial-level emission inventory of 13 kinds of heavy metals including V, Cr, Mn, Co, Ni, Cu, Zn, As, Cd, Sn, Sb, Ba and Pb from 10 anthropogenic sources was developed for China, based on the 2015 national emission inventory of primary particulate matters and source category-specific speciation profiles collected from 50 previous studies measured in China. Uncertainties associated with the speciation profiles were also evaluated. Our results suggested that total emissions of the 13 types of heavy metals in China are estimated at about 58000 ton for the year 2015. The iron production is the dominant source of heavy metal, contributing 42% of total emissions of heavy metals. The emissions of heavy metals vary significantly at regional scale, with largest amount of emissions concentrated in northern and eastern China. Particular, high emissions of Cr, Co, Ni, As and Sb (contributing 8%-18% of the national emissions) are found in Shandong where has large capacity of industrial production. Uncertainty analysis suggested that the implementation of province-specific source profiles in this study significantly reduced the emission uncertainties from (-89%, 289%) to (-99%, 91%), particularly for coal combustion. However, source profiles for industry sectors such as non-metallic mineral manufacturing are quite limited, resulting in a relative high uncertainty. The high-resolution emission inventories of heavy metals are essential not only for their distribution, deposition and transport studies, but for the design of policies to redress critical atmospheric environmental hazards at local and regional scales. Detailed investigation on source-specific profile in China are still needed to achieve more accurate estimations of heavy metals in the future. Copyright © 2018 Elsevier Ltd. All rights reserved.

Impact of Heavy Metal Pollution on Ammonia Oxidizers in Soils in the Vicinity of a Tailings Dam, Baotou, China.

PubMed

Liu, Jumei; Cao, Weiwei; Jiang, Haiming; Cui, Jing; Shi, Chunfang; Qiao, Xiaohui; Zhao, Ji; Si, Wantong

2018-05-09

Soil heavy metal pollution has received increasing attention due to their toxicity to soil microorganisms. We have analyzed the effects of heavy metal pollution on ammonia-oxidizing archaea (AOA) and ammonia-oxidizing bacteria (AOB) in soils in the vicinity of a tailings dam of Baotou region, China. Results showed that AOB were dominated with Nitrosomonas-like clusters, while AOA was dominated by group1.1b (Nitrososphaera cluster). Single Cd and Cr contents, as well as compound heavy metal pollution levels, had a significant negative impact on soil potential nitrification rate and both diversities of AOA and AOB. No clear relationship was found between any single heavy metal and abundance of AOA or AOB. But compound pollution could significantly decrease AOA abundance. The results indicated that heavy metal pollution had an obviously deleterious effect on the abundance, diversity, activity and composition of ammonia oxidizers in natural soils.

Spatial distribution of heavy metals in surficial sediments from Guanabara Bay: Rio de Janeiro, Brazil

NASA Astrophysics Data System (ADS)

Neto, José Antônio Baptista; Gingele, Franz Xaver; Leipe, Thomas; Brehme, Isa

2006-04-01

Ninety-two surface sediment samples were collected in Guanabara Bay, one of the most prominent urban bays in SE Brazil, to investigate the spatial distribution of anthropogenic pollutants. The concentrations of heavy metals, organic carbon and particle size were examined in all samples. Large spatial variations of heavy metals and particle size were observed. The highest concentrations of heavy metals were found in the muddy sediments from the north western region of the bay near the main outlets of the most polluted rivers, municipal waste drainage systems and one of the major oil refineries. Another anomalous concentration of metals was found adjacent to Rio de Janeiro Harbour. The heavy metal concentrations decrease to the northeast, due to intact rivers and the mangrove systems in this area, and to the south where the sand fraction and open-marine processes dominate. The geochemical normalization of metal data to Li or Al has also demonstrated that the anthropogenic input of heavy metals have altered the natural sediment heavy metal distribution.

Social anxiety, alcohol expectancies, and self-efficacy as predictors of heavy drinking in college students.

PubMed

Gilles, Donna M; Turk, Cynthia L; Fresco, David M

2006-03-01

Burke and Stephens (1999) [Burke, R.S., Stephens, R.S. Social anxiety and drinking in college students: A social cognitive theory analysis. Clinical Psychology Review, 19, (1999) 513-530.] proposed a social cognitive theory of heavy drinking in college students. According to this theory, alcohol expectancies for social facilitation and self-efficacy for refusing heavy drinking in anxiety-producing social situations moderate the relationship between social anxiety and drinking. In the current study, a significant three-way interaction was observed among social anxiety, expectancies, and self-efficacy when amount and frequency of drinking was the dependent variable. As predicted by the model, socially anxious college students with low self-efficacy for avoiding heavy drinking in social situations and high positive expectancies for social facilitation reported more alcohol consumption than other socially anxious individuals.

Laser-Induced Breakdown Spectroscopy for Rapid Discrimination of Heavy-Metal-Contaminated Seafood Tegillarca granosa

PubMed Central

Ji, Guoli; Ye, Pengchao; Shi, Yijian; Yuan, Leiming; Chen, Xiaojing; Yuan, Mingshun; Zhu, Dehua; Chen, Xi; Hu, Xinyu; Jiang, Jing

2017-01-01

Tegillarca granosa samples contaminated artificially by three kinds of toxic heavy metals including zinc (Zn), cadmium (Cd), and lead (Pb) were attempted to be distinguished using laser-induced breakdown spectroscopy (LIBS) technology and pattern recognition methods in this study. The measured spectra were firstly processed by a wavelet transform algorithm (WTA), then the generated characteristic information was subsequently expressed by an information gain algorithm (IGA). As a result, 30 variables obtained were used as input variables for three classifiers: partial least square discriminant analysis (PLS-DA), support vector machine (SVM), and random forest (RF), among which the RF model exhibited the best performance, with 93.3% discrimination accuracy among those classifiers. Besides, the extracted characteristic information was used to reconstruct the original spectra by inverse WTA, and the corresponding attribution of the reconstructed spectra was then discussed. This work indicates that the healthy shellfish samples of Tegillarca granosa could be distinguished from the toxic heavy-metal-contaminated ones by pattern recognition analysis combined with LIBS technology, which only requires minimal pretreatments. PMID:29149053

The Longitudinal Association between Multiple Substance Use Discrepancies and Marital Satisfaction

PubMed Central

Homish, Gregory G.; Leonard, Kenneth E.; Kozlowski, Lynn T.; Cornelius, Jack R.

2009-01-01

AIMS The objective of this work was to examine the relation between patterns of substance use among newly married couples and marital satisfaction over time. In particular, this work examined if differences between husbands’ and wives’ heavy alcohol use and cigarette smoking, rather than simply use per se, predicted decreases in marital satisfaction over the first seven years of marriage. METHODS Married couples (n=634 couples) were assessed on a variety of substance use and relationship variables at the time of marriage and again at the first, second, fourth and seventh year of marriage. RESULTS After controlling for key sociodemographic variables, discrepancies in husband and wife cigarette smoking and heavy alcohol use were related to significant reductions in marital satisfaction. Importantly, couples who were discrepant on both substances experienced the greatest declines in marital satisfaction over time. CONCLUSIONS Patterns of substance use among newly married couples are important predictors of changes in marital functioning over time. It was not simply the heavy alcohol use or cigarette smoking that predicted dissatisfaction, but rather, differences between husbands’ and wives’ substance use that impacted the relationship. PMID:19563563

The longitudinal association between multiple substance use discrepancies and marital satisfaction.

PubMed

Homish, Gregory G; Leonard, Kenneth E; Kozlowski, Lynn T; Cornelius, Jack R

2009-07-01

The objective of this work was to examine the relation between patterns of substance use among newly married couples and marital satisfaction over time. In particular, this work examined if differences between husbands' and wives' heavy alcohol use and cigarette smoking, rather than simply use per se, predicted decreases in marital satisfaction over the first 7 years of marriage. Married couples (n = 634 couples) were assessed on a variety of substance use and relationship variables at the time of marriage and again at the first, second, fourth and seventh years of marriage. After controlling for key socio-demographic variables, discrepancies in husband and wife cigarette smoking and heavy alcohol use were related to significant reductions in marital satisfaction. Importantly, couples who were discrepant on both substances experienced the greatest declines in marital satisfaction over time. Patterns of substance use among newly married couples are important predictors of changes in marital functioning over time. It was not simply the heavy alcohol use or cigarette smoking that predicted dissatisfaction but, rather, differences between husbands' and wives' substance use that impacted the relationship.

Location tests for biomarker studies: a comparison using simulations for the two-sample case.

PubMed

Scheinhardt, M O; Ziegler, A

2013-01-01

Gene, protein, or metabolite expression levels are often non-normally distributed, heavy tailed and contain outliers. Standard statistical approaches may fail as location tests in this situation. In three Monte-Carlo simulation studies, we aimed at comparing the type I error levels and empirical power of standard location tests and three adaptive tests [O'Gorman, Can J Stat 1997; 25: 269 -279; Keselman et al., Brit J Math Stat Psychol 2007; 60: 267- 293; Szymczak et al., Stat Med 2013; 32: 524 - 537] for a wide range of distributions. We simulated two-sample scenarios using the g-and-k-distribution family to systematically vary tail length and skewness with identical and varying variability between groups. All tests kept the type I error level when groups did not vary in their variability. The standard non-parametric U-test performed well in all simulated scenarios. It was outperformed by the two non-parametric adaptive methods in case of heavy tails or large skewness. Most tests did not keep the type I error level for skewed data in the case of heterogeneous variances. The standard U-test was a powerful and robust location test for most of the simulated scenarios except for very heavy tailed or heavy skewed data, and it is thus to be recommended except for these cases. The non-parametric adaptive tests were powerful for both normal and non-normal distributions under sample variance homogeneity. But when sample variances differed, they did not keep the type I error level. The parametric adaptive test lacks power for skewed and heavy tailed distributions.

Potentiation: Effect of Ballistic and Heavy Exercise on Vertical Jump Performance.

PubMed

Hester, Garrett M; Pope, Zachary K; Sellers, John H; Thiele, Ryan M; DeFreitas, Jason M

2017-03-01

Hester, GM, Pope, ZK, Sellers, JH, Thiele, RM, and DeFreitas, JM. Potentiation: Effect of ballistic and heavy exercise on vertical jump performance. J Strength Cond Res 31(3): 660-666, 2017-The purpose of this study was to compare the acute effects of heavy and ballistic conditioning protocols on vertical jump performance in resistance-trained men. Fourteen resistance-trained men (mean ± SD: age = 22 ± 2.1 years, body mass = 86.29 ± 9.95 kg, and height = 175.39 ± 9.34 cm) with an average relative full squat of 2.02 ± 0.28 times their body mass participated in this study. In randomized, counterbalanced order, subjects performed two countermovement vertical jumps before and 1, 3, 5, and 10 minutes after either performing 10 rapid jump squats or 5 heavy back squats. The back squat protocol consisted of 5 repetitions at 80% one repetition maximum (1RM), whereas the jump squat protocol consisted of 10 repetitions at 20% 1RM. Peak jump height (in centimeters) using a jump mat, along with power output (in Watts) and velocity (in meters per second) through a linear transducer, was recorded for each time interval. There was no significant condition × time interaction for any of the dependent variables (p = 0.066-0.127). In addition, there was no main effect for condition for any of the dependent variables (p = 0.457-0.899). Neither the ballistic nor heavy protocol used in this study enhanced vertical jump performance at any recovery interval. The use of these protocols in resistance-trained men to produce postactivation potentiation is not recommended.

High baryon densities in heavy ion collisions at energies attainable at the BNL Relativistic Heavy-Ion Collider and the CERN Large Hadron Collider

NASA Astrophysics Data System (ADS)

Li, Ming; Kapusta, Joseph I.

2017-01-01

In very high-energy collisions nuclei are practically transparent to each other but produce very hot nearly baryon-free matter in the so-called central rapidity region. The energy in the central rapidity region comes from the kinetic energy of the colliding nuclei. We calculate the energy and rapidity loss of the nuclei using the color glass condensate model. This model also predicts the excitation energy of the nuclear fragments. Using a space-time picture of the collision we calculate the baryon and energy densities of the receding baryonic fireballs. For central collisions of gold nuclei at the highest energy attainable at the Relativistic Heavy-Ion Collider, for example, we find baryon densities more than ten times that of atomic nuclei over a large volume.

Characterizing the risk assessment of heavy metals and sampling uncertainty analysis in paddy field by geostatistics and GIS.

PubMed

Liu, Xingmei; Wu, Jianjun; Xu, Jianming

2006-05-01

For many practical problems in environmental management, information about soil heavy metals, relative to threshold values that may be of practical importance is needed at unsampled sites. The Hangzhou-Jiaxing-Huzhou (HJH) Plain has always been one of the most important rice production areas in Zhejiang province, China, and the soil heavy metal concentration is directly related to the crop quality and ultimately the health of people. Four hundred and fifty soil samples were selected in topsoil in HJH Plain to characterize the spatial variability of Cu, Zn, Pb, Cr and Cd. Ordinary kriging and lognormal kriging were carried out to map the spatial patterns of heavy metals and disjunctive kriging was used to quantify the probability of heavy metal concentrations higher than their guide value. Cokriging method was used to minimize the sampling density for Cu, Zn and Cr. The results of this study could give insight into risk assessment of environmental pollution and decision-making for agriculture.

[Effect of Characteristic Variable Extraction on Accuracy of Cu in Navel Orange Peel by LIBS].

PubMed

Li, Wen-bing; Yao, Ming-yin; Huang, Lin; Chen, Tian-bing; Zheng, Jian-hong; Fan, Shi-quan; Liu Mu-hua HE, Mu-hua; Lin, Jin-long; Ouyang, Jing-yi

2015-07-01

Heavy metals pollution in foodstuffs is more and more serious. It is impossible to satisfy the modern agricultural development by conventional chemical analysis. Laser induced breakdown spectroscopy (LIBS) is an emerging technology with the characteristic of rapid and nondestructive detection. But LIBS' s repeatability, sensitivity and accuracy has much room to improve. In this work, heavy metal Cu in Gannan Navel Orange which is the Jiangxi specialty fruit will be predicted by LIBS. Firstly, the navel orange samples were contaminated in our lab. The spectra of samples were collected by irradiating the peel by optimized LIBS parameters. The laser energy was set as 20 mJ, delay time of Spectral Data Gathering was set as 1.2 micros, the integration time of Spectral data gathering was set as 2 ms. The real concentration in samples was obtained by AAS (atom absorption spectroscopy). The characteristic variables Cu I 324.7 and Cu I 327.4 were extracted. And the calibration model was constructed between LIBS spectra and real concentration about Cu. The results show that relative error of the predicted concentrations of three relational model were 7.01% or less, reached a minimum of 0.02%, 0.01% and 0.02% respectively. The average relative errors were 2.33%, 3.10% and 26.3%. Tests showed that different characteristic variables decided different accuracy. It is very important to choose suitable characteristic variable. At the same time, this work is helpful to explore the distribution of heavy metals between pulp and peel.

Projecting future precipitation and temperature at sites with diverse climate through multiple statistical downscaling schemes

NASA Astrophysics Data System (ADS)

Vallam, P.; Qin, X. S.

2017-10-01

Anthropogenic-driven climate change would affect the global ecosystem and is becoming a world-wide concern. Numerous studies have been undertaken to determine the future trends of meteorological variables at different scales. Despite these studies, there remains significant uncertainty in the prediction of future climates. To examine the uncertainty arising from using different schemes to downscale the meteorological variables for the future horizons, projections from different statistical downscaling schemes were examined. These schemes included statistical downscaling method (SDSM), change factor incorporated with LARS-WG, and bias corrected disaggregation (BCD) method. Global circulation models (GCMs) based on CMIP3 (HadCM3) and CMIP5 (CanESM2) were utilized to perturb the changes in the future climate. Five study sites (i.e., Alice Springs, Edmonton, Frankfurt, Miami, and Singapore) with diverse climatic conditions were chosen for examining the spatial variability of applying various statistical downscaling schemes. The study results indicated that the regions experiencing heavy precipitation intensities were most likely to demonstrate the divergence between the predictions from various statistical downscaling methods. Also, the variance computed in projecting the weather extremes indicated the uncertainty derived from selection of downscaling tools and climate models. This study could help gain an improved understanding about the features of different downscaling approaches and the overall downscaling uncertainty.

Environmental and Body Concentrations of Heavy Metals at Sites Near and Distant from Industrial Complexes in Ulsan, Korea.

PubMed

Sung, Joo Hyun; Oh, Inbo; Kim, Ahra; Lee, Jiho; Sim, Chang Sun; Yoo, Cheolin; Park, Sang Jin; Kim, Geun Bae; Kim, Yangho

2018-01-29

Industrial pollution may affect the heavy metal body burden of people living near industrial complexes. We determined the average concentrations of atmospheric heavy metals in areas close to and distant from industrial complexes in Korea, and the body concentrations of these heavy metals in residents living near and distant from these facilities. The atmospheric data of heavy metals (lead and cadmium) were from the Regional Air Monitoring Network in Ulsan. We recruited 1,148 participants, 872 who lived near an industrial complex ("exposed" group) and 276 who lived distant from industrial complexes ("non-exposed" group), and measured their concentrations of blood lead, urinary cadmium, and urinary total mercury. The results showed that atmospheric and human concentrations of heavy metals were higher in areas near industrial complexes. In addition, residents living near industrial complexes had higher individual and combined concentrations (cadmium + lead + mercury) of heavy metals. We conclude that residents living near industrial complexes are exposed to high concentrations of heavy metals, and should be carefully monitored. © 2018 The Korean Academy of Medical Sciences.

Environmental and Body Concentrations of Heavy Metals at Sites Near and Distant from Industrial Complexes in Ulsan, Korea

PubMed Central

2017-01-01

Background Industrial pollution may affect the heavy metal body burden of people living near industrial complexes. We determined the average concentrations of atmospheric heavy metals in areas close to and distant from industrial complexes in Korea, and the body concentrations of these heavy metals in residents living near and distant from these facilities. Methods The atmospheric data of heavy metals (lead and cadmium) were from the Regional Air Monitoring Network in Ulsan. We recruited 1,148 participants, 872 who lived near an industrial complex (“exposed” group) and 276 who lived distant from industrial complexes (“non-exposed” group), and measured their concentrations of blood lead, urinary cadmium, and urinary total mercury. Results The results showed that atmospheric and human concentrations of heavy metals were higher in areas near industrial complexes. In addition, residents living near industrial complexes had higher individual and combined concentrations (cadmium + lead + mercury) of heavy metals. Conclusion We conclude that residents living near industrial complexes are exposed to high concentrations of heavy metals, and should be carefully monitored. PMID:29349943

Generation, Diversity Determination, and Application to Antibody Selection of a Human Naïve Fab Library

PubMed Central

Kim, Sangkyu; Park, Insoo; Park, Seung Gu; Cho, Seulki; Kim, Jin Hong; Ipper, Nagesh S.; Choi, Sun Shim; Lee, Eung Suk; Hong, Hyo Jeong

2017-01-01

We constructed a large naïve human Fab library (3 × 1010 colonies) from the lymphocytes of 809 human donors, assessed available diversities of the heavy-chain variable (VH) and κ light-chain variable (VK) domain repertoires, and validated the library by selecting Fabs against 10 therapeutically relevant antigens by phage display. We obtained a database of unique 7,373 VH and 41,804 VK sequences by 454 pyrosequencing, and analyzed the repertoires. The distribution of VH and VK subfamilies and germline genes in our antibody repertoires slightly differed from those in earlier published natural antibody libraries. The frequency of somatic hypermutations (SHMs) in heavy-chain complementarity determining region (HCDR)1 and HCDR2 are higher compared with the natural IgM repertoire. Analysis of position-specific SHMs in CDRs indicates that asparagine, threonine, arginine, aspartate and phenylalanine are the most frequent non-germline residues on the antibody-antigen interface and are converted mostly from the germline residues, which are highly represented in germline SHM hotspots. The amino acid composition and length-dependent changes in amino acid frequencies of HCDR3 are similar to those in previous reports, except that frequencies of aspartate and phenylalanine are a little higher in our repertoire. Taken together, the results show that this antibody library shares common features of natural antibody repertoires and also has unique features. The antibody library will be useful in the generation of human antibodies against diverse antigens, and the information about the diversity of natural antibody repertoires will be valuable in the future design of synthetic human antibody libraries with high functional diversity. PMID:28927259

Next-Generation DNA Sequencing of VH/VL Repertoires: A Primer and Guide to Applications in Single-Domain Antibody Discovery.

PubMed

Henry, Kevin A

2018-01-01

Immunogenetic analyses of expressed antibody repertoires are becoming increasingly common experimental investigations and are critical to furthering our understanding of autoimmunity, infectious disease, and cancer. Next-generation DNA sequencing (NGS) technologies have now made it possible to interrogate antibody repertoires to unprecedented depths, typically by sequencing of cDNAs encoding immunoglobulin variable domains. In this chapter, we describe simple, fast, and reliable methods for producing and sequencing multiplex PCR amplicons derived from the variable regions (V H , V H H or V L ) of rearranged immunoglobulin heavy and light chain genes using the Illumina MiSeq platform. We include complete protocols and primer sets for amplicon sequencing of V H /V H H/V L repertoires directly from human, mouse, and llama lymphocytes as well as from phage-displayed V H /V H H/V L libraries; these can be easily be adapted to other types of amplicons with little modification. The resulting amplicons are diverse and representative, even using as few as 10 3 input B cells, and their generation is relatively inexpensive, requiring no special equipment and only a limited set of primers. In the absence of heavy-light chain pairing, single-domain antibodies are uniquely amenable to NGS analyses. We present a number of applications of NGS technology useful in discovery of single-domain antibodies from phage display libraries, including: (i) assessment of library functionality; (ii) confirmation of desired library randomization; (iii) estimation of library diversity; and (iv) monitoring the progress of panning experiments. While the case studies presented here are of phage-displayed single-domain antibody libraries, the principles extend to other types of in vitro display libraries.

Generation, Diversity Determination, and Application to Antibody Selection of a Human Naïve Fab Library.

PubMed

Kim, Sangkyu; Park, Insoo; Park, Seung Gu; Cho, Seulki; Kim, Jin Hong; Ipper, Nagesh S; Choi, Sun Shim; Lee, Eung Suk; Hong, Hyo Jeong

2017-09-30

We constructed a large naïve human Fab library (3 × 10 10 colonies) from the lymphocytes of 809 human donors, assessed available diversities of the heavy-chain variable (VH) and κ light-chain variable (VK) domain repertoires, and validated the library by selecting Fabs against 10 therapeutically relevant antigens by phage display. We obtained a database of unique 7,373 VH and 41,804 VK sequences by 454 pyrosequencing, and analyzed the repertoires. The distribution of VH and VK subfamilies and germline genes in our antibody repertoires slightly differed from those in earlier published natural antibody libraries. The frequency of somatic hypermutations (SHMs) in heavy-chain complementarity determining region (HCDR)1 and HCDR2 are higher compared with the natural IgM repertoire. Analysis of position-specific SHMs in CDRs indicates that asparagine, threonine, arginine, aspartate and phenylalanine are the most frequent non-germline residues on the antibody-antigen interface and are converted mostly from the germline residues, which are highly represented in germline SHM hotspots. The amino acid composition and length-dependent changes in amino acid frequencies of HCDR3 are similar to those in previous reports, except that frequencies of aspartate and phenylalanine are a little higher in our repertoire. Taken together, the results show that this antibody library shares common features of natural antibody repertoires and also has unique features. The antibody library will be useful in the generation of human antibodies against diverse antigens, and the information about the diversity of natural antibody repertoires will be valuable in the future design of synthetic human antibody libraries with high functional diversity.

Study of the population of neutron-rich heavy nuclei in the A 200 mass region via multinucleon transfer reactions

NASA Astrophysics Data System (ADS)

Fioretto, E.; Corradi, L.; Galtarossa, F.; Szilner, S.; Montanari, D.; Mijatović, T.; Pollarolo, G.; Jia, H. M.; Ackermann, D.; Bourgin, D.; Colucci, G.; Courtin, S.; Fruet, G.; Goasduff, A.; Grebosz, J.; Haas, F.; Jelavić Malenica, D.; Jeong, S. C.; John, P. R.; Milin, M.; Montagnoli, G.; Skukan, N.; Scarlassara, F.; Soić, N.; Stefanini, A. M.; Strano, E.; Tokić, V.; Ur, C. A.; Valiente-Dobón, J. J.; Watanabe, Y. X.

2017-11-01

Multineutron and multiproton transfer channels, populated in the inverse kinematics reaction 197Au+130Te at Elab=1.07 GeV, were measured at Laboratori Nazionali di Legnaro using the presently heaviest ion beam delivered by the PIAVE-ALPI accelerator complex and detecting both projectile-like and targetlike ions. To this end the large solid angle magnetic spectrometer PRISMA was coupled to a second arm for the detection of the heavy fragments in kinematic coincidence with the light ones selected and identified with the spectrometer. The data analysis is still in progress and will allow to compare the yields of both light and heavy partner with theoretical predictions performed with the GRAZING code to get quantitative information on transfer channels and the effect of evaporation and fission on the production rate of primary fragments. The mass integrated Z distribution, extracted from the experimental data, evidenced the population of proton pickup channels that, in conjunction with the neutron stripping ones from the 130Te, open the path for the production of neutron-rich heavy nuclei. In the following, we will present some preliminary results as well as details on the experimental configuration and perspectives for future investigations in the neutron-rich heavy region.

Horizontal distribution and levels of heavy metals in the biggest snowstorm in a century in Shenyang, China.

PubMed

An, Jing; Zhou, Qixing; Liu, Weitao; Ren, Liping

2008-01-01

The horizontal distribution and levels of heavy metals in the biggest snowstorm in Shenyang since 1904 were investigated by analyzing 4 metals (As, Cd, Pb, and Cu) in a series of ultraclean samples collected from 17 sites distributed in different regions of the Shenyang area, China. The results showed that the concentrations of all the 4 heavy metals in snow from the industrial regions were high, up to 7.3 (As), 2.2 (Cd), 850.0 (Pb), and 0.197-20.2 (Cu) microg/kg, respectively. In the suburb, in contrast, their concentrations were not detected, except for As. Because of the long-term application of arsenical pesticides and herbicides, As was detected in the snow samples which collected on the farm. As, Cd, and Pb were also detected in the snow samples collected from the parks, the residential areas, and the commercial districts mainly by reason of human activities. In a sense, long-term industrial activities, traffic activities, coal combustion, and agricultural activities affected the horizontal distribution and levels of these heavy metals in snow differently. The data relating to the horizontal distribution and concentrations of heavy metals in the snow under extreme climatic conditions can provide with a unique snapshot of environmental pollution situation and behaviors in urban areas.

Optimization of heavy metals total emission, case study: Bor (Serbia)

NASA Astrophysics Data System (ADS)

Ilić, Ivana; Bogdanović, Dejan; Živković, Dragana; Milošević, Novica; Todorović, Boban

2011-07-01

The town of Bor (Serbia) is one of the most polluted towns in southeastern Europe. The copper smelter which is situated in the centre of the town is the main pollutant, mostly because of its old technology, which leads to environmental pollution caused by higher concentrations of SO 2 and PM 10. These facts show that the word is about a very polluted region in Europe which, apart from harming human health in the region itself, poses a particular danger for wider area of southeastern Europe. Optimization of heavy metal's total emission was undertaken because years of long contamination of the soil with heavy metals of anthropogenic origin created a danger that those heavy metals may enter the food chains of animals and people, which can lead to disastrous consequences. This work represents the usage of Geographic Information System (GIS) for establishing a multifactor assessment model to quantitatively divide polluted zones and for selecting control sites in a linear programming model, combined with PROMETHEE/GAIA method, Screen View modeling system, and linear programming model. The results show that emissions at some control sites need to be cut for about 40%. In order to control the background of heavy metal pollution in Bor, the ecological environment must be improved.

Genes and quantitative trait loci (QTL) controlling trace element concentrations in perennial grasses grown on phytotoxic soil contaminated with heavy metals

USDA-ARS?s Scientific Manuscript database

Perennial grasses cover diverse soils throughout the world, including sites contaminated with heavy metals, producing forages that must be safe for livestock and wildlife. Chromosome regions known as quantitative trait loci (QTLs) controlling forage mineral concentrations were mapped in a populatio...

VNIR hyperspectral background characterization methods in adverse weather conditions

NASA Astrophysics Data System (ADS)

Romano, João M.; Rosario, Dalton; Roth, Luz

2009-05-01

Hyperspectral technology is currently being used by the military to detect regions of interest where potential targets may be located. Weather variability, however, may affect the ability for an algorithm to discriminate possible targets from background clutter. Nonetheless, different background characterization approaches may facilitate the ability for an algorithm to discriminate potential targets over a variety of weather conditions. In a previous paper, we introduced a new autonomous target size invariant background characterization process, the Autonomous Background Characterization (ABC) or also known as the Parallel Random Sampling (PRS) method, features a random sampling stage, a parallel process to mitigate the inclusion by chance of target samples into clutter background classes during random sampling; and a fusion of results at the end. In this paper, we will demonstrate how different background characterization approaches are able to improve performance of algorithms over a variety of challenging weather conditions. By using the Mahalanobis distance as the standard algorithm for this study, we compare the performance of different characterization methods such as: the global information, 2 stage global information, and our proposed method, ABC, using data that was collected under a variety of adverse weather conditions. For this study, we used ARDEC's Hyperspectral VNIR Adverse Weather data collection comprised of heavy, light, and transitional fog, light and heavy rain, and low light conditions.

Arctic sea-ice melting: Effects on hydroclimatic variability and on UV-induced carbon cycling

NASA Astrophysics Data System (ADS)

Sulzberger, Barbara

2016-04-01

Since 1980 both the perennial and the multiyear central Arctic sea ice areas have declined by approximately 13 and 15% per decade, respectively (IPCC, 2013). Arctic sea-ice melting has led to an increase in the amplitude of the Northern Hemisphere jet stream and, as a consequence, in more slowly moving Rossby waves which results in blocking of weather patterns such as heat waves, droughts, cold spells, and heavy precipitation events (Francis and Vavrus, 2012). Changing Rossby waves account for more than 30% of the precipitation variability over several regions of the northern middle and high latitudes, including the US northern Great Plains and parts of Canada, Europe, and Russia (Schubert et al., 2011). From 2007 to 2013, northern Europe experienced heavy summer precipitation events that were unprecedented in over a century, concomitant with Arctic sea ice loss (Screen, 2013). Heavy precipitation events tend to increase the runoff intensity of terrigenous dissolved organic matter (tDOM) (Haaland et al., 2010). In surface waters tDOM is subject to UV-induced oxidation to produce atmospheric CO2. Mineralization of DOM also occurs via microbial respiration. However, not all chemical forms of DOM are available to bacterioplankton. UV-induced transformations generally increase the bioavailability of tDOM (Sulzberger and Durisch-Kaiser, 2009). Mineralization of tDOM is an important source of atmospheric CO2 and this process is likely to contribute to positive feedbacks on global warming (Erickson et al., 2015). However, the magnitudes of these potential feedbacks remain unexplored. This paper will discuss the following items: 1.) Links between Arctic sea-ice melting, heavy precipitation events, and enhanced tDOM runoff. 2.) UV-induced increase in the bioavailability of tDOM. 3.) UV-mediated feedbacks on global warming. References Erickson, D. J. III, B. Sulzberger, R. G. Zepp, A. T. Austin (2015), Effects of stratospheric ozone depletion, solar UV radiation, and climate change on biogeochemical cycling: interactions and feedbacks, Photochemical & Photobiological Sciences, 14(1), 127-148. Francis, J. A., S. J. Vavrus (2012), Evidence linking Arctic amplification to extreme weather in mid-latitudes, Geophysical Research Letters, 39, doi: 10.1029/2012GL051000. Haaland, S., D. Hongve, H. Laudon, G. Riise, R. D. Vogt (2010), Quantifying the drivers of the increasing colored organic matter in boreal surface waters, Environmental Science & Technology, 44(8), 2975-2980. IPCC Climate Change 2013 - The Physical Science Bases (2013). Schubert, S., H. Wang, M. Suarez (2011), Warm season subseasonal variability and climate extremes in the Northern Hemisphere: The role of stationary Rossby waves, Journal of Climate, 24(18), 4773-4792. Screen, J. A. (2013), Influence of Arctic sea ice on European summer precipitation, Environmental Research Letters, 8(4), doi: 10.1088/1748-9326/8/4/044015. Sulzberger, B., E. Durisch-Kaiser (2009), Chemical characterization of dissolved organic matter (DOM): A prerequisite for understanding UV-induced changes of DOM absorption properties and bioavailability, Aquatic Sciences, 71(2), 104-126.

Parameterization of fission barrier heights of medium, heavy and super heavy nuclei

NASA Astrophysics Data System (ADS)

Manjunatha, H. C.

2017-12-01

A new semi empirical formula is proposed for fission barrier heights of medium, heavy and super heavy nuclei in the atomic number region 50 ≤ Z ≤ 130. The fitting parameters for the proposed formula are obtained by making a polynomial fit to the available theoretical and experimental data. The calculated fission barrier heights are compared with that of experiments and other theoretical models such as SHF(SLy6) (Burvenich et al. in Phys Rev C 69:014307, 2004), SHFB(SkM) (Baran et al. in Nucl Phys A 944:442, 2015), FRLDM (Möller et al. in Phys Rev C 79:064304, 2009), ETFSI (SkSC4) with Skyrme SkSC4 force (Mamdouh et al. in Nucl Phys A 679:337, 2001), WS (Kowal et al. in Phys Rev C 82:014303, 2010) and CDFT(DD-ME2) (Abusara et al. in Phys Rev C 85:024314, 2012). The standard deviation for fission barrier heights produced by present formula is evaluated. The good agreement of present formula with the experiments and other models suggests that the present formula could be used to evaluate the fission barrier heights of medium, heavy and super heavy nuclei in the region 50 ≤ Z ≤ 130. This formula is a first of its kind that produces fission barrier heights of 2858 nuclei with the only simple inputs of only neutron number (N), proton number (Z) and mass number (A).

Abundance and Source Population of Suprathermal Heavy Ions in Corotating Interaction Regions

NASA Astrophysics Data System (ADS)

Jensema, R. J.; Desai, M. I.; Broiles, T. W.; Dayeh, M. A.

2015-12-01

In this study we analyze the abundances of suprathermal heavy ions in 75 Corotating Interaction Region (CIR) events between January 1st 1995 and December 31st 2008. We correlate the heavy ion abundances in these CIRs with those measured in the solar wind and suprathermal populations upstream of these events. Our analysis reveals that the CIR suprathermal heavy ion abundances vary by nearly two orders of magnitude over the solar activity cycle, with higher abundances (e.g., Fe/O) occurring during solar maximum and depleted values occurring during solar minimum. The abundances are also energy dependent, with larger abundances at higher energies, particularly during solar maximum. Following the method used by Mason et al. 2008, we correlate the CIR abundances with the corresponding solar wind and suprathermal values measured during 6-hour intervals for upstream periods spanning 10 days prior to the start of each CIR event. This correlation reveals that suprathermal heavy ions are better correlated with upstream suprathermal abundances measured at the same energy compared with the solar wind heavy ion abundances. Using the 6-hour averaging method, we also identified timeframes of maximum correlation between the CIR and the upstream suprathermal abundances, and find that the time of maximum correlation depends on the energy of the suprathermal ions. We discuss the implications of these results in terms of previous studies of CIR and suprathermal particles, and CIR seed populations and acceleration mechanisms.

Longitudinal study of hippocampal volumes in heavy cannabis users.

PubMed

Koenders, L; Lorenzetti, V; de Haan, L; Suo, C; Vingerhoets, Wam; van den Brink, W; Wiers, R W; Meijer, C J; Machielsen, Mwj; Goudriaan, A E; Veltman, D J; Yücel, M; Cousijn, J

2017-08-01

Cannabis exposure, particularly heavy cannabis use, has been associated with neuroanatomical alterations in regions rich with cannabinoid receptors such as the hippocampus in some but not in other (mainly cross-sectional) studies. However, it remains unclear whether continued heavy cannabis use alters hippocampal volume, and whether an earlier age of onset and/or a higher dosage exacerbate these changes. Twenty heavy cannabis users (mean age 21 years, range 18-24 years) and 23 matched non-cannabis using healthy controls were submitted to a comprehensive psychological assessment and magnetic resonance imaging scan at baseline and at follow-up (average of 39 months post-baseline; standard deviation=2.4). Cannabis users started smoking around 16 years and smoked on average five days per week. A novel aspect of the current study is that hippocampal volume estimates were obtained from manual tracing the hippocampus on T1-weighted anatomical magnetic resonance imaging scans, using a previously validated protocol. Compared to controls, cannabis users did not show hippocampal volume alterations at either baseline or follow-up. Hippocampal volumes increased over time in both cannabis users and controls, following similar trajectories of increase. Cannabis dose and age of onset of cannabis use did not affect hippocampal volumes. Continued heavy cannabis use did not affect hippocampal neuroanatomical changes in early adulthood. This contrasts with prior evidence on alterations in this region in samples of older adult cannabis users. In young adults using cannabis at this level, cannabis use may not be heavy enough to affect hippocampal neuroanatomy.

Parameterization of fission barrier heights of medium, heavy and super heavy nuclei

NASA Astrophysics Data System (ADS)

Manjunatha, H. C.

2018-04-01

A new semi empirical formula is proposed for fission barrier heights of medium, heavy and super heavy nuclei in the atomic number region 50 ≤ Z ≤ 130. The fitting parameters for the proposed formula are obtained by making a polynomial fit to the available theoretical and experimental data. The calculated fission barrier heights are compared with that of experiments and other theoretical models such as SHF(SLy6) (Burvenich et al. in Phys Rev C 69:014307, 2004), SHFB(SkM) (Baran et al. in Nucl Phys A 944:442, 2015), FRLDM (Möller et al. in Phys Rev C 79:064304, 2009), ETFSI (SkSC4) with Skyrme SkSC4 force (Mamdouh et al. in Nucl Phys A 679:337, 2001), WS (Kowal et al. in Phys Rev C 82:014303, 2010) and CDFT(DD-ME2) (Abusara et al. in Phys Rev C 85:024314, 2012). The standard deviation for fission barrier heights produced by present formula is evaluated. The good agreement of present formula with the experiments and other models suggests that the present formula could be used to evaluate the fission barrier heights of medium, heavy and super heavy nuclei in the region 50 ≤ Z ≤ 130. This formula is a first of its kind that produces fission barrier heights of 2858 nuclei with the only simple inputs of only neutron number (N), proton number (Z) and mass number (A).

Isotopic source signatures: Impact of regional variability on the δ13CH4 trend and spatial distribution

NASA Astrophysics Data System (ADS)

Feinberg, Aryeh I.; Coulon, Ancelin; Stenke, Andrea; Schwietzke, Stefan; Peter, Thomas

2018-02-01

The atmospheric methane growth rate has fluctuated over the past three decades, signifying variations in methane sources and sinks. Methane isotopic ratios (δ13CH4) differ between emission categories, and can therefore be used to distinguish which methane sources have changed. However, isotopic modelling studies have mainly focused on uncertainties in methane emissions rather than uncertainties in isotopic source signatures. We simulated atmospheric δ13CH4 for the period 1990-2010 using the global chemistry-climate model SOCOL. Empirically-derived regional variability in the isotopic signatures was introduced in a suite of sensitivity simulations. These simulations were compared to a baseline simulation with commonly used global mean isotopic signatures. We investigated coal, natural gas/oil, wetland, livestock, and biomass burning source signatures to determine whether regional variations impact the observed isotopic trend and spatial distribution. Based on recently published source signature datasets, our calculated global mean isotopic signatures are in general lighter than the commonly used values. Trends in several isotopic signatures were also apparent during the period 1990-2010. Tropical livestock emissions grew during the 2000s, introducing isotopically heavier livestock emissions since tropical livestock consume more C4 vegetation than midlatitude livestock. Chinese coal emissions, which are isotopically heavy compared to other coals, increase during the 2000s leading to higher global values of δ13CH4 for coal emissions. EDGAR v4.2 emissions disagree with the observed atmospheric isotopic trend for almost all simulations, confirming past doubts about this emissions inventory. The agreement between the modelled and observed δ13CH4 interhemispheric differences improves when regional source signatures are used. Even though the simulated results are highly dependent on the choice of methane emission inventories, they emphasize that the commonly used global mean signatures are inadequate. Regional isotopic signatures should be employed in modelling studies that try to constrain methane emission inventories.

Binge-Drinking and Non-Binge-Drinking Student-Athletes: The Role of Proximal Norms, Negative Expectancies, and Selected Sociodemographic Variables

ERIC Educational Resources Information Center

Lewis, Todd F.; Milroy, Jeffrey; Wyrick, David; Hebard, Stephen P.; Lamberson, Katie A.

2017-01-01

Researchers have identified college student-athletes as a subgroup at risk for heavy drinking and associated consequences. Yet, few studies have examined multiple variables simultaneously to determine which stand out as most robust to explain drinking behavior among student-athletes. Student-athletes from 54 National Collegiate Athletic…

Evaluation of the potential of the Stirling engine for heavy duty application

NASA Technical Reports Server (NTRS)

Meijer, R. J.; Ziph, B.

1981-01-01

A 150 hp four cylinder heavy duty Stirling engine was evaluated. The engine uses a variable stroke power control system, swashplate drive and ceramic insulation. The sensitivity of the design to engine size and heater temperature is investigated. Optimization shows that, with porous ceramics, indicated efficiencies as high as 52% can be achieved. It is shown that the gain in engine efficiency becomes insignificant when the heater temperature is raised above 200 degrees F.

Quantitative assessment of atmospheric emissions of toxic heavy metals from anthropogenic sources in China: historical trend, spatial variation distribution, uncertainties and control policies

NASA Astrophysics Data System (ADS)

Tian, H. Z.; Zhu, C. Y.; Gao, J. J.; Cheng, K.; Hao, J. M.; Wang, K.; Hua, S. B.; Wang, Y.; Zhou, J. R.

2015-04-01

Anthropogenic atmospheric emissions of typical toxic heavy metals have received worldwide concerns due to their adverse effects on human health and the ecosystem. By determining the best available representation of time-varying emission factors with S-shape curves, we established the multiyear comprehensive atmospheric emission inventories of 12 typical toxic heavy metals (Hg, As, Se, Pb, Cd, Cr, Ni, Sb, Mn, Co, Cu and Zn) from primary anthropogenic activities in China for the period of 1949-2012 for the first time. Further, we allocated the annual emissions of these heavy metals in 2010 at a high spatial resolution of 0.5° × 0.5° grid with ArcGIS methodology and surrogate indexes, such as regional population and gross domestic product (GDP). Our results show that the historical emissions of Hg, As, Se, Cd, Cr, Ni, Sb, Mn, Co, Cu and Zn during the period of 1949-2012, have been increased by about 22-128 times at an annual average growth rate of 5.1-8.0%, amounting to about 79 570 t in 2012. Nonferrous metal smelting, coal combustion of industrial boilers, brake and tyre wear, and ferrous metals smelting represent the dominant sources for Hg / Cd, As / Se / Pb / Cr / Ni / Mn / Co, Sb / Cu, and Zn, respectively. In terms of spatial variation, the majority of emissions were concentrated in relatively developed regions, especially for the northern, eastern and southern coastal regions. In addition, because of the flourishing nonferrous metals smelting industry, several southwestern and central-southern provinces play a prominent role in some specific toxic heavy metals emissions, like Hg in Guizhou and As in Yunnan. Finally, integrated countermeasures are proposed to minimize the final toxic heavy metals discharge on accounting of the current and future demand of energy-saving and pollution reduction in China.

Heavy metals in food crops, soil, and water in the Lihe River Watershed of the Taihu Region and their potential health risks when ingested.

PubMed

Chen, Lian; Zhou, Shenglu; Shi, Yaxing; Wang, Chunhui; Li, Baojie; Li, Yan; Wu, Shaohua

2018-02-15

Environmental pollution by heavy metals resulting from rapid economic development is a major concern. Soil, water, wheat, and rice samples were collected from the Lihe River Watershed in the Taihu Region (east China). In this study area, many types of industrial plants, including ceramics factories, plants working with refractory materials, and chemical plants are densely distributed and cause serious heavy metal pollution. In addition, well-developed transportation and agricultural activities are also important sources of heavy metals. Thus, the concentrations of selected heavy metals including cadmium (Cd), chromium (Cr), copper (Cu), nickel (Ni), lead (Pb), and zinc (Zn) in the samples were analyzed to evaluate their potential integral risk (IR) to the health of the local population. Accordingly, the spatial distribution pattern of the IR values was determined in the study. The soil in the study area showed heavy Cd pollution, whereas the pollution by other elements was relatively slight. When the proportions of grain samples in which the concentrations exceeded the tolerance limits were examined, the grains were primarily contaminated with Pb, Ni, Cd, and Zn; and less contaminated with Cu and Cr. The drinking water of the local inhabitants was safe. The average IR value was 3.53 for adults and 3.91 for children, indicating that both adults and children may experience adverse health effects. The spatial distribution pattern of the IR values among the exposed populations in the study area showed high values in the eastern and middle parts, with maximum values >5, and low values in the western part, with minimum values <2. This is consistent with the distributions of the industries and the population. The study may provide a basis for comparison to other regions both in China and worldwide. Copyright © 2017 Elsevier B.V. All rights reserved.

DOE Office of Scientific and Technical Information (OSTI.GOV)

Zhi, Ting; Tao, Tao; Liu, Bin, E-mail: bliu@nju.edu.cn, E-mail: rzhang@nju.edu.cn

Through investigating the temperature dependent current-voltage (T-I-V) properties of GaN based blue and green LEDs in this study, we propose an asymmetric tunneling model to understand the leakage current below turn-on voltage (V < 3.2 V): At the forward bias within 1.5 V ∼ 2.1 V (region 1), the leakage current is main attributed to electrons tunneling from the conduction band of n-type GaN layer to the valence band of p-type GaN layer via defect states in space-charge region (SCR); While, at the forward bias within 2 V ∼ 2.4 V (region 2), heavy holes tunneling gradually becomes dominant atmore » low temperature (T < 200K) as long as they can overcome the energy barrier height. The tunneling barrier for heavy holes is estimated to be lower than that for electrons, indicating the heavy holes might only tunnel to the defect states. This asymmetric tunneling model shows a novel carrier transport process, which provides better understanding of the leakage characteristics and is vital for future device improvements.« less

Rain rate intensity model for communication link design across the Indian region

NASA Astrophysics Data System (ADS)

Kilaru, Aravind; Kotamraju, Sarat K.; Avlonitis, Nicholas; Sri Kavya, K. Ch.

2016-07-01

A study on rain statistical parameters such as one minute rain intensity, possible number of minute occurrences with respective percentage of time in a year has been evaluated for the purpose of communication link design at Ka, Q, V bands as well as at Free-Space Optical communication links (FSO). To understand possible outage period of a communication links due to rainfall and to investigate rainfall pattern, Automatic Weather Station (AWS) rainfall data is analysed due its ample presence across India. The climates of the examined AWS regions vary from desert to cold climate, heavy rainfall to variable rainfall regions, cyclone effective regions, mountain and coastal regions. In this way a complete and unbiased picture of the rainfall statistics for Indian region is evaluated. The analysed AWS data gives insight into yearly accumulated rainfall, maximum hourly accumulated rainfall, mean hourly accumulated rainfall, number of rainy days and number of rainy hours from 668 AWS locations. Using probability density function the one minute rainfall measurements at KL University is integrated with AWS measurements for estimating number of rain occurrences in terms of one minute rain intensity for annual rainfall accumulated between 100 mm and 5000 mm to give an insight into possible one minute accumulation pattern in an hour for comprehensive analysis of rainfall influence on a communication link for design engineers. So that low availability communications links at higher frequencies can be transformed into a reliable and economically feasible communication links for implementing High Throughput Services (HTS).

Heavy Thunderstorm Synoptic Climatology and Forcing Mechanisms in Saudi Arabia.

NASA Astrophysics Data System (ADS)

Ghulam, Ayman S.

2010-05-01

Meteorologists are required to provide accurate and comprehensive weather information for planning and operational aviation, agricultural, water projects and also for the public. In general, weather phenomena such as thunderstorms over the area between the tropics and the middle latitudes are not fully understood, particularly in the Middle East area, for many reasons such as: 1) the complexity of the nature of the climate due to the wide-ranging diversity in the topography and landscape in the area; 2) the lack of meteorological data in the area; and 3) the lack of studies on local weather situations. In arid regions such as Saudi Arabia, the spatial and temporal variation of thunderstorms and associated rainfall are essential in determining their effects on social and economic conditions. Thunderstorms form rapidly, due to the fact that the significant heating of the air from the surface and the ensuing rainfall usually occurs within a short period of time. Thus, understanding thunderstorms and rainfall distribution in time and space would be useful for hydrologists, meteorologists and for environmental studies. Research all over the world has shown, however, that consideration of local factors like Low Level Jets (LLJ), moisture flux, sea breezes, and the Red Sea Convergence Zone (RSCZ) would be valuable in thunderstorm prediction. The combined effects of enhanced low-level moisture convergence and layer destabilization due to upslope flow over mountainous terrain has been shown to be responsible for thunderstorm development in otherwise non-favourable conditions. However, there might be other synoptic features associated with heavy thunderstorms or cause them, but these features have not been investigated in any research in Saudi Arabia. Thus, relating the local weather and synoptic situations with those over the middle latitudes will provide a valuable background for the forecasters to issue the medium-range forecasts which are important for many projects. These forecasts become possible when the movement and the development of the mid-latitude disturbances are known very well. To further increase our understanding of the inter-annual variability of thunderstorms in semi-arid areas such as Saudi Arabia, it is necessary to consider the relationship between this variability and the large-scale atmospheric parameters in addition to the geographical features. Moreover, better insight into the monthly variations of the synoptic situations in Saudi Arabia is considered to be important for understanding the broad mechanisms responsible for thunderstorm occurrences in this geographical area. This information is highly important for aviation and other sectors in Saudi Arabia - both public and private. This paper aims to investigate the favourable synoptic environments for heavy thunderstorm initiation and development in Saudi Arabia. The importance of the monthly synoptic analysis of all days (1998-2003), heavy thunderstorm days, and dry days was intended to be demonstrated. Therefore, the monthly mean charts and deviations from the mean (anomalies) of specific meteorological parameters for heavy thunderstorm days and dry days for the months of January-December for the period 1998-2003, was illustrated to examine the synoptic conditions leading to heavy thunderstorm events in Saudi Arabia.

Practicability of monitoring soil Cd, Hg, and Pb pollution based on a geochemical survey in China.

PubMed

Xia, Xueqi; Yang, Zhongfang; Li, Guocheng; Yu, Tao; Hou, Qingye; Mutelo, Admire Muchimamui

2017-04-01

Repeated visiting, i.e., sampling and analysis at two or more temporal points, is one of the important ways of monitoring soil heavy metal contamination. However, with the concern about the cost, determination of the number of samples and the temporal interval, and their capability to detect a certain change is a key technical problem to be solved. This depends on the spatial variation of the parameters in the monitoring units. The "National Multi-Purpose Regional Geochemical Survey" (NMPRGS) project in China, acquired the spatial distribution of heavy metals using a high density sampling method in the most arable regions in China. Based on soil Cd, Hg, and Pb data and taking administrative regions as the monitoring units, the number of samples and temporal intervals that may be used for monitoring soil heavy metal contamination were determined. It was found that there is a large variety of spatial variation of the elements in each NMPRGS region. This results in the difficulty in the determination of the minimum detectable changes (MDC), the number of samples, and temporal intervals for revisiting. This paper recommends a suitable set of the number of samples (n r ) for each region under the balance of cost, practicability, and monitoring precision. Under n r , MDC values are acceptable for all the regions, and the minimum temporal intervals are practical with the range of 3.3-13.3 years. Copyright © 2017 Elsevier Ltd. All rights reserved.

Use of algal fluorescence for determination of phytotoxicity of heavy metals and pesticides as environmental pollutants.

PubMed

Samson, G; Popovic, R

1988-12-01

The phytotoxicity of heavy metals and pesticides was studied by using the fluorescence induction from the alga Dunaliella tertiolecta. The complementary area calculated from the variable fluorescence induction was used as a direct parameter to estimate phytotoxicity. The value of this parameter was affected when algae were treated with different concentrations of mercury, copper, atrazine, DCMU, Dutox, and Soilgard. The toxic effect of these pollutants was estimated by monitoring the decrease in the complementary area, which reflects photosystem II photochemistry. Further, the authors have demonstrated the advantage of using the complementary area as a parameter of phytotoxicity over using variable fluorescence yield. The complementary area of algal fluorescence can be used as a simple and sensitive parameter in the estimation of the phytotoxicity of polluted water.

Immunoglobulin from Antarctic fish species of Rajidae family.

PubMed

Coscia, Maria Rosaria; Cocca, Ennio; Giacomelli, Stefano; Cuccaro, Fausta; Oreste, Umberto

2012-03-01

Immunoglobulins (Ig) of Chondroichthyes have been extensively studied in sharks; in contrast, in skates investigations on Ig remain scarce and fragmentary despite the high occurrence of skates in all of the major oceans of the world. To focus on Rajidae Igμ, the most abundant heavy chain isotype, we have chosen the Antarctic species Bathyraja eatonii, Bathyraja albomaculata, Bathyraja brachyurops, and Amblyraja georgiana which live at high latitudes in the Southern Ocean, and at very low temperatures. We prepared mRNA from the spleen of individuals of each species and performed RT-PCR experiments using two oligonucleotides designed on the alignment of various elasmobranch Igμ heavy chain sequences available in GenBank. The PCR products, about 1400-nt long, were cloned and sequenced. Nucleotide sequence identities calculated for the constant region domains ranged from 88.5% to 97.5% between species, and from 91.1% to 99.7% within species. In a distance tree, including also Raja erinacea sequences, two major branches were obtained, one containing Arhynchobatinae sequences, the other one Rajinae sequences. Four presumptive D gene segments were identified in the region of the VH/D/JH recombination; two different D segments were often found in the same sequence. Moreover, 5-15 genomic fragments of different lengths, carrying the gene locus encoding Igμ chain were revealed by Southern blotting analysis. B. eatonii amino acid sequences were analyzed for the positional diversity by Shannon entropy analysis, showing CH4 as the most conserved domain, and CH3 as the most variable one. B. eatonii CDR3 region length varied between 11 and 15 amino acid residues; the mean length (13.4 aa) was greater than that of Leucoraja eglanteria sequences (7.7 aa). An alignment of representative sequences of Antarctic species and R. erinacea showed that more cysteine residues not involved in the intradomain disulfide bridges were present in Antarctic species. Copyright © 2011 Elsevier B.V. All rights reserved.

Plasma observations near saturn: initial results from voyager 2.

PubMed

Bridge, H S; Bagenal, F; Belcher, J W; Lazarus, A J; McNutt, R L; Sullivan, J D; Gazis, P R; Hartle, R E; Ogilvie, K W; Scudder, J D; Sittler, E C; Eviatar, A; Siscoe, G L; Goertz, C K; Vasyliunas, V M

1982-01-29

Results of measurements of plasma electrons and poitive ions made during the Voyager 2 encounter with Saturn have been combined with measurements from Voyager 1 and Pioneer 11 to define more clearly the configuration of plasma in the Saturnian magnetosphere. The general morphology is well represented by four regions: (i) the shocked solar wind plasma in the magnetosheath, observed between about 30 and 22 Saturn radii (RS) near the noon meridian; (ii) a variable density region between approximately 17 RS and the magnetopause; (iii) an extended thick plasma sheet between approximately 17 and approximately 7 RS symmetrical with respect to Saturn's equatorial plane and rotation axis; and (iv) an inner plasma torus that probably originates from local sources and extends inward from L approximately 7 to less than L approximately 2.7 (L is the magnetic shell parameter). In general, the heavy ions, probably O(+), are more closely confined to the equatorial plane than H(+), so that the ratio of heavy to light ions varies along the trajectory according to the distance of the spacecraft from the equatorial plane. The general configuration of the plasma sheet at Saturn found by Voyager 1 is confirmed, with some notable differences and additions. The "extended plasma sheet," observed between L approximately 7 and L approximately 15 by Voyager 1 is considerably thicker as observed by Voyager 2. Inward of L approximately 4, the plasma sheet collapses to a thin region about the equatorial plane. At the ring plane crossing, L approximately 2.7, the observations are consistent with a density of O(+) of approximately 100 per cubic centimeter, with a temperature of approximately 10 electron volts. The location of the bow shock and magnetopause crossings were consistent with those previously observed. The entire magnetosphere was larger during the outbound passage of Voyager 2 than had been previously observed; however, a magnetosphere of this size or larger is expected approximately 3 percent of the time.

College Student Affect and Heavy Drinking: Variable Associations Across Days, Semesters, and People

PubMed Central

Howard, Andrea L.; Patrick, Megan E.; Maggs, Jennifer L.

2014-01-01

This study tested associations between positive and negative affect and heavy drinking in 734 college students who completed daily diaries in 14-day bursts once per semester over 7 semesters (≤98 days per person). Three-level multilevel models tested whether affect and heavy drinking were linked across days, semesters, and persons. Higher daily, between-semester, and between-person positive affect were each associated with a greater odds of heavy drinking on weekdays and on weekend days. A significant interaction with semester in college showed that the association between daily positive affect and heavy drinking on weekend days became stronger over time. That is, heavy drinking on a weekend day with higher positive affect was more likely in later years of college (OR=2.93, Fall of 4th year), compared to earlier in college (OR=1.80, Fall of 1st year). A similar interaction was found for between-semester positive affect and heavy drinking on weekdays. Higher daily negative affect was associated with a greater odds of heavy drinking on weekdays only for students who first began drinking in 7th grade or earlier (OR=2.36). Results of this study highlight the importance of varied time spans in studying the etiology, consequences, and prevention of heavy drinking. Harm-reduction strategies that target positive affect-related drinking by encouraging protective behaviors during celebratory events may become increasingly important as students transition to later years of college. PMID:25347017

College student affect and heavy drinking: Variable associations across days, semesters, and people.

PubMed

Howard, Andrea L; Patrick, Megan E; Maggs, Jennifer L

2015-06-01

This study tested associations between positive and negative affect and heavy drinking in 734 college students who completed daily diaries in 14-day bursts once per semester over 7 semesters (≤98 days per person). Three-level multilevel models tested whether affect and heavy drinking were linked across days, semesters, and persons. Higher daily, between-semester, and between-person positive affect were each associated with greater odds of heavy drinking on weekdays and on weekend days. A significant interaction with semester in college showed that the association between daily positive affect and heavy drinking on weekend days became stronger over time. That is, heavy drinking on a weekend day with higher positive affect was more likely in later years of college (OR = 2.93, Fall of 4th year), compared to earlier in college (OR = 1.80, Fall of 1st year). A similar interaction was found for between-semester positive affect and heavy drinking on weekdays. Higher daily negative affect was associated with a greater odds of heavy drinking on weekdays only for students who first began drinking in 7th grade or earlier (OR = 2.36). Results of this study highlight the importance of varied time spans in studying the etiology, consequences, and prevention of heavy drinking. Harm-reduction strategies that target positive affect-related drinking by encouraging protective behaviors during celebratory events may become increasingly important as students transition to later years of college. (PsycINFO Database Record (c) 2015 APA, all rights reserved).

Field accumulation risks of heavy metals in soil and vegetable crop irrigated with sewage water in western region of Saudi Arabia.

PubMed

Balkhair, Khaled S; Ashraf, Muhammad Aqeel

2016-01-01

Wastewater irrigated fields can cause potential contamination with heavy metals to soil and groundwater, thus pose a threat to human beings . The current study was designed to investigate the potential human health risks associated with the consumption of okra vegetable crop contaminated with toxic heavy metals. The crop was grown on a soil irrigated with treated wastewater in the western region of Saudi Arabia during 2010 and 2011. The monitored heavy metals included Cd, Cr, Cu, Pb and Zn for their bioaccumulation factors to provide baseline data regarding environmental safety and the suitability of sewage irrigation in the future. The pollution load index (PLI), enrichment factor (EF) and contamination factor (CF) of these metals were calculated. The pollution load index of the studied soils indicated their level of metal contamination. The concentrations of Ni, Pb, Cd and Cr in the edible portions were above the safe limit in 90%, 28%, 83% and 63% of the samples, respectively. The heavy metals in the edible portions were as follows: Cr > Zn > Ni > Cd > Mn > Pb > Cu > Fe. The Health Risk Index (HRI) was >1 indicating a potential health risk. The EF values designated an enhanced bio-contamination compared to other reports from Saudi Arabia and other countries around the world. The results indicated a potential pathway of human exposure to slow poisoning by heavy metals due to the indirect utilization of vegetables grown on heavy metal-contaminated soil that was irrigated by contaminated water sources. The okra tested was not safe for human use, especially for direct consumption by human beings. The irrigation source was identified as the source of the soil pollution in this study.

Determination of trace and heavy metals in some commonly used medicinal herbs in Ayurveda.

PubMed

Nema, Neelesh K; Maity, Niladri; Sarkar, Birendra K; Mukherjee, Pulok K

2014-11-01

Traditionally, the herbal drugs are well established for their therapeutic benefits. Depending upon their geographical sources sometimes the trace and heavy metals' content may differ, which may lead to severe toxicity. So, the toxicological and safety assessment of these herbal drugs are one of the major issues in recent days. Eight different plant species including Aloe vera, Centella asiatica, Calendula officinalis, Cucumis sativus, Camellia sinensis, Clitoria ternatea, Piper betel and Tagetes erecta were selected to determine their heavy and trace metals content and thereby to assure their safer therapeutic application. The trace and heavy metals were detected through atomic absorption spectrometry analysis. The selected medicinal plant materials were collected from the local cultivated regions of West Bengal, India, and were digested with nitric acid and hydrochloric acid as specified. Absorbance was measured through atomic absorption spectrometer (AA 303) and the concentration of different trace and heavy metals in the plant samples were calculated. The quantitative determinations were carried out using standard calibration curve obtained by the standard solutions of different metals. The contents of heavy metals were found to be within the prescribed limit. Other trace metals were found to be present in significant amount. Thus, on the basis of experimental outcome, it can be concluded that the plant materials collected from the specific region are safe and may not produce any harmful effect of metal toxicity during their therapeutic application. The investigated medicinal plants contain trace metals such as copper (Cu), chromium (Cr), manganese (Mn), iron (Fe) and nickel (Ni) as well as heavy metals such as arsenic (As), lead (Pb) and mercury (Hg), which were present within the permissible limit. © The Author(s) 2012.

Field accumulation risks of heavy metals in soil and vegetable crop irrigated with sewage water in western region of Saudi Arabia

PubMed Central

Balkhair, Khaled S.; Ashraf, Muhammad Aqeel

2015-01-01

Wastewater irrigated fields can cause potential contamination with heavy metals to soil and groundwater, thus pose a threat to human beings . The current study was designed to investigate the potential human health risks associated with the consumption of okra vegetable crop contaminated with toxic heavy metals. The crop was grown on a soil irrigated with treated wastewater in the western region of Saudi Arabia during 2010 and 2011. The monitored heavy metals included Cd, Cr, Cu, Pb and Zn for their bioaccumulation factors to provide baseline data regarding environmental safety and the suitability of sewage irrigation in the future. The pollution load index (PLI), enrichment factor (EF) and contamination factor (CF) of these metals were calculated. The pollution load index of the studied soils indicated their level of metal contamination. The concentrations of Ni, Pb, Cd and Cr in the edible portions were above the safe limit in 90%, 28%, 83% and 63% of the samples, respectively. The heavy metals in the edible portions were as follows: Cr > Zn > Ni > Cd > Mn > Pb > Cu > Fe. The Health Risk Index (HRI) was >1 indicating a potential health risk. The EF values designated an enhanced bio-contamination compared to other reports from Saudi Arabia and other countries around the world. The results indicated a potential pathway of human exposure to slow poisoning by heavy metals due to the indirect utilization of vegetables grown on heavy metal-contaminated soil that was irrigated by contaminated water sources. The okra tested was not safe for human use, especially for direct consumption by human beings. The irrigation source was identified as the source of the soil pollution in this study. PMID:26858563

[Environmental geochemical baseline of heavy metals in soils of the Ili river basin and pollution evaluation].

PubMed

Zhao, Xin-Ru; Nasier, Telajin; Cheng, Yong-Yi; Zhan, Jiang-Yu; Yang, Jian-Hong

2014-06-01

Environmental geochemical baseline models of Cu, Zn, Pb, As, Hg were established by standardized method in the ehernozem, chestnut soil, sierozem and saline soil from the Ili river valley region. The theoretical baseline values were calculated. Baseline factor pollution index evaluation method, environmental background value evaluation method and heavy metal cleanliness evaluation method were used to compare soil pollution degrees. The baseline factor pollution index evaluation showed that As pollution was the most prominent among the four typical types of soils within the river basin, with 7.14%, 9.76%, 7.50% of sampling points in chernozem, chestnut soil and sierozem reached the heavy pollution, respectively. 7.32% of sampling points of chestnut soil reached the permitted heavy metal Pb pollution index in the chestnut soil. The variation extent of As and Pb was the largest, indicating large human disturbance. Environmental background value evaluation showed that As was the main pollution element, followed by Cu, Zn and Pb. Heavy metal cleanliness evaluation showed that Cu, Zn and Pb were better than cleanliness level 2 and Hg was the of cleanliness level 1 in all four types of soils. As showed moderate pollution in sierozem, and it was of cleanliness level 2 or better in chernozem, chestnut soil and saline-alkali soil. Comparing the three evaluation systems, the baseline factor pollution index evaluation more comprehensively reflected the geochemical migration characteristics of elements and the soil formation processes, and the pollution assessment could be specific to the sampling points. The environmental background value evaluation neglected the natural migration of heavy metals and the deposition process in the soil since it was established on the regional background values. The main purpose of the heavy metal cleanliness evaluation was to evaluate the safety degree of soil environment.

Identification of antigen-specific human monoclonal antibodies using high-throughput sequencing of the antibody repertoire.

PubMed

Liu, Ju; Li, Ruihua; Liu, Kun; Li, Liangliang; Zai, Xiaodong; Chi, Xiangyang; Fu, Ling; Xu, Junjie; Chen, Wei

2016-04-22

High-throughput sequencing of the antibody repertoire provides a large number of antibody variable region sequences that can be used to generate human monoclonal antibodies. However, current screening methods for identifying antigen-specific antibodies are inefficient. In the present study, we developed an antibody clone screening strategy based on clone dynamics and relative frequency, and used it to identify antigen-specific human monoclonal antibodies. Enzyme-linked immunosorbent assay showed that at least 52% of putative positive immunoglobulin heavy chains composed antigen-specific antibodies. Combining information on dynamics and relative frequency improved identification of positive clones and elimination of negative clones. and increase the credibility of putative positive clones. Therefore the screening strategy could simplify the subsequent experimental screening and may facilitate the generation of antigen-specific antibodies. Copyright © 2016 Elsevier Inc. All rights reserved.

Atmospheric quality and distribution of heavy metals in Argentina employing Tillandsia capillaris as a biomonitor.

PubMed

Pignata, M L; Gudiño, G L; Wannaz, E D; Plá, R R; González, C M; Carreras, H A; Orellana, L

2002-01-01

The atmospheric quality and distribution of heavy metals were evaluated throughout a wide region of Argentina. In addition, the biomonitor performance of Tillandsia capillaris Ruiz & Pav. f. capillaris was studied in relation to the accumulation of heavy metals and to its physiologic response to air pollutants. A sampling area of 50,000 km2 was selected in the central region of the Argentine Republic. This area was subdivided into grids of 25 x 25 km. Pools of T. capillaris, where present, were collected at each intersection point. From each pool three sub-samples were analyzed independently. Furthermore, five replicates were collected at 20% of the points in order to analyze the variability within the site. The content of Co, Cu, Fe, Ni, Mn, Pb and Zn was determined by Atomic Absorption Spectrometry. Chemical-physiological parameters were also determined to detect symptoms of foliar damage. Chlorophylls, phaeophytins, hydroperoxy conjugated dienes, malondialdehyde and sulfur were quantified in T. capillaris. Some of these parameters were used to calculate a foliar damage index. Data sets were evaluated by one-way ANOVA, correlation analysis, principal component analysis and mapping. Geographical distribution patterns were obtained for the different metals reflecting the contribution of natural and anthropogenic emission sources. According to our results it can be inferred that Fe, Mn and Co probably originated in the soil. For Pb, the highest values were found in the mountainous area, which can be attributed to the presence of Pb in the granitic rocks. Ni showed mainly an anthropogenic origin, with higher values found in places next to industrial centers. For Zn the highest values were in areas of agricultural development. The same was observed for Cu, whose presence could be related to the employment of pesticides. The foliar damage index distribution map showed that the central and southeastern zones were the ones where the major damage in the bioindicator was found. The central zone coincides with the city of Córdoba whereas the southeastern area is strictly agricultural, so the high values found there could be related to the use of pesticides.

Temporal Stability of Heavy Drinking Days and Drinking Reductions among Heavy Drinkers in the COMBINE Study

PubMed Central

Witkiewitz, Katie; Wilson, Adam D.; Pearson, Matthew R.; Hallgren, Kevin A.; Falk, Daniel E.; Litten, Raye Z.; Kranzler, Henry R.; Mann, Karl F.; Hasin, Deborah S.; O'Malley, Stephanie S.; Anton, Raymond F.

2017-01-01

Background Recently, the Food and Drug Administration (FDA) proposed to expand the options for primary endpoints in the development of medications for alcohol use disorder (AUD) to include either abstinence from alcohol or a non-abstinent outcome: no heavy drinking days (with a heavy drinking day defined as more than 3 drinks per day for women and more than 4 drinks per day for men [>3/>4 cutoff]). The FDA also suggested that 6 months would be the most appropriate length for a clinical trial to demonstrate the stability of this non-abstinent drinking outcome. However, few alcohol clinical trials have examined the stability of non-heavy drinking during and after treatment. Methods In a secondary analysis of the COMBINE study data (n=1383), we examined transitions in heavy drinking days during the course of treatment (months 1 through 4), during the transition out of treatment (months 4 through 7), and up to 12 months afterwards (months 13 through 16) using latent variable mixture models. Results Heavy drinking and non-heavy drinking were relatively stable in consecutive months (minimum agreement (kappa) = .64 for months 1 to 2). Most individuals were stable low-risk drinkers/abstainers or heavy drinkers by the end of treatment, as characterized by a 10% probability (or less) of transitioning out of either a no heavy drinking state or a heavy drinking state. More than two-thirds of the heavy drinkers who exceeded the heavy drinking threshold during treatment reported, on average, a 64% reduction in drinking frequency and a 38% reduction in drinking intensity from pretreatment drinking levels. Conclusions The results show stability of no heavy drinking as an outcome within the first four months of treatment and that the >3/>4 drink cutoff may mask substantial reductions in alcohol consumption among some patients. Future studies should explore the clinical utility of reduction endpoints. PMID:28295414

Human immunoglobulin allotypes

PubMed Central

Lefranc, Marie-Paule

2009-01-01

More than twenty recombinant monoclonal antibodies are approved as therapeutics. Almost all of these are based on the whole IgG isotype format, but vary in the origin of the variable regions between mouse (chimeric), humanized mouse and fully human sequences; all of those with whole IgG format employ human constant region sequences. Currently, the opposing merits of the four IgG subclasses are considered with respect to the in vivo biological activities considered to be appropriate to the disease indication being treated. Human heavy chain genes also exhibit extensive structural polymorphism(s) and, being closely linked, are inherited as a haplotype. Polymorphisms (allotypes) within the IgG isotype were originally discovered and described using serological reagents derived from humans; demonstrating that allotypic variants can be immunogenic and provoke antibody responses as a result of allo-immunization. The serologically defined allotypes differ widely within and between population groups; therefore, a mAb of a given allotype will, inevitably, be delivered to a cohort of patients homozygous for the alternative allotype. This publication reviews the serologically defined human IgG allotypes and considers the potential for allotype differences to contribute to or potentiate immunogenicity. PMID:20073133

GIS Analysis of Changes in Ecological Vulnerability Using a SPCA Model in the Loess Plateau of Northern Shaanxi, China

PubMed Central

Kang, Hou; Xuxiang, Li; Jing, Zhang

2015-01-01

Changes in ecological vulnerability were analyzed for Northern Shaanxi, China using a geographic information system (GIS). An evaluation model was developed using a spatial principal component analysis (SPCA) model containing land use, soil erosion, topography, climate, vegetation and social economy variables. Using this model, an ecological vulnerability index was computed for the research region. Using natural breaks classification (NBC), the evaluation results were divided into five types: potential, slight, light, medium and heavy. The results indicate that there is greater than average optimism about the conditions of the study region, and the ecological vulnerability index (EVI) of the southern eight counties is lower than that of the northern twelve counties. From 1997 to 2011, the ecological vulnerability index gradually decreased, which means that environmental security was gradually enhanced, although there are still some places that have gradually deteriorated over the past 15 years. In the study area, government and economic factors and precipitation are the main reasons for the changes in ecological vulnerability. PMID:25898407

Activation-induced cytidine deaminase (AID) is strongly expressed in the fetal bovine ileal Peyer's patch and spleen and is associated with expansion of the primary antibody repertoire in the absence of exogenous antigens.

PubMed

Liljavirta, J; Ekman, A; Knight, J S; Pernthaner, A; Iivanainen, A; Niku, M

2013-09-01

Due to a limited range of immunoglobulin (Ig) genes, cattle and several other domestic animals rely on postrecombinatorial amplification of the primary repertoire. We report that activation-induced cytidine deaminase (AID) is strongly expressed in the fetal bovine ileal Peyer's patch and spleen but not in fetal bone marrow. The numbers of IGHV (immunoglobulin heavy chain variable) mutations correlate with AID expression. The mutational profile in the fetuses is similar to postnatal and immunized calves, with targeting of complementarity-determining region (CDR) over framework region (FR), preference of replacement over silent mutations in CDRs but not in FRs, and targeting of the AID hotspot motif RGYW/WRCY. Statistical analysis indicates negative selection on FRs and positive selection on CDRs. Our results suggest that AID-mediated somatic hypermutation and selection take place in bovine fetuses, implying a role for AID in the diversification of the primary antibody repertoire in the absence of exogenous antigens.

Assessment of restoration measures efficiency for soil contamination in Mediterranean Ecosystem. The case study of Guadiamar Green Corridor in the context of RECARE project

NASA Astrophysics Data System (ADS)

Anaya-Romero, Maria; José Blanco-Velázquez, Francisco; Muñoz-Vallés, Sara

2017-04-01

Restoration of soil ecosystems contaminated by heavy metals requires their characterization and the assessment of measures for risk reduction. Particular soil traits and history define different levels of resilience, so soil contamination assessment needs to take into account a site-by-site approach, which considers both the particular environmental characteristics of soils and the human activities. Nevertheless, current approaches for soil contamination assessment developed as academy and market solutions continue to be rather qualitative, and they do not allow as far the selection of efficient remediation measures to solve soil contamination at the long-term and extensively over larger áreas. In this context, under the framework of RECARE (Preventing and Remediating degradation of Soils in Europe through Land Care) project, we are designing a Decision Support System (DSS) which automatically assess soil contamination values by heavy metals in the topsoil and evaluate the efficiency of soil remediation measures under scenarios of climate and land-use change. The DSS works by simulating the spatio-temporal efficiency of three widely applied remediation measures (compost, sugar beet lime and iron-rich clayey materials). Input variables are divided into: (I) climate variables (mainly precipitation and temperature), (II) site variables (elevation, slope and erodibility), (III) soil (heavy metal content, pH, sand/clay content, soil organic carbon and bulk density), (IV) land use and (V) remediation measures. The predictor variables are related to soil functions expressed by % of change of heavy metal content (Currently the DSS consider cadmium dynamics due to the worldwide distribution in agricultural system and toxicity impact on health and plants), soil carbon and erosion dynamics. The pilot study area is the Guadiamar valley (SW Spain) where the main threat is soil contamination, after a mine spill occurred on April 1998. Since that time, a huge soil databse of more than 30 Gbytes, has been produced by different stakeholders (administration, scientist and private sector), which covered the spatial-temporal evolution of soil contamination by specific soil remediation measures, so the affected area has become the "virtual lab" to develop and test the DSS. Further development of the DSS tool includes its validation/calibration in other European climate zones, such as Copsa Mica in Romania, and the inclusion of new input and output variables to improve the accurancy of results.

ELECTROKINETIC REMEDIATION: BASICS AND TECHNOLOGY STATUS

EPA Science Inventory

Electrokinetic remediation, variably named as electrochemical soil processing, electromigration, electrokinetic decontamination or electroreclamation uses electric currents to extract radionuclides, heavy metals, certain organic compounds, or mixed inorganic species and some orga...

Effective atomic number, energy loss and radiation damage studies in some materials commonly used in nuclear applications for heavy charged particles such as H, C, Mg, Fe, Te, Pb and U

NASA Astrophysics Data System (ADS)

Kurudirek, Murat

2016-05-01

Commonly used nuclear physics materials such as water, concrete, Pb-glass, paraffin, freon and P 10 gases, some alloys such as brass, bronze, stainless-steel and some scintillators such as anthracene, stilbene and toluene have been investigated with respect to the heavy charged particle interaction as means of projected range and effective atomic number (Zeff) in the energy region 10 keV to 10 MeV. Calculations were performed for heavy ions such as H, C, Mg, Fe, Te, Pb and U. Also, the energy loss and radiation damage were studied using SRIM Monte Carlo code for anthracene for different heavy ions of 100 keV kinetic energy. It has been observed that the variation in Zeff becomes less when the atomic number of the ions increase. Glass-Pb, bronze, brass, stainless-steel and Freon gas were found to vary less than 10% in the energy region 10 keV to 10 MeV. For total proton interaction, discrepancies up to 10% and 18% between two databases namely PSTAR and SRIM were noted in mass stopping power and Zeff of water, respectively. The range calculations resulted with a conclusion that the metal alloys and glass-Pb have lowest values of ranges confirming best shielding against energetic heavy ions whereas freon and P 10 gases have the highest values of ranges in the entire energy region. The simulation results showed that the energy loss (%) to target electrons decreases as the Z of the incident ion increases. Also, it was observed that the radiation damage first increases with Z of the ion and then keeps almost constant for ions with Z≥52.

Fluxes of dissolved organic carbon and nitrogen to the northern Indian Ocean from the Indian monsoonal rivers

NASA Astrophysics Data System (ADS)

Krishna, M. S.; Prasad, V. R.; Sarma, V. V. S. S.; Reddy, N. P. C.; Hemalatha, K. P. J.; Rao, Y. V.

2015-10-01

Dissolved organic carbon (DOC) and nitrogen (DON) were measured in 27 major and medium monsoonal estuaries along the Indian coast during southwest monsoon in order to understand the spatial variability in their concentrations and fluxes to the northern Indian Ocean. A strong spatial variability (~20-fold) in DOC and DON was observed in the Indian monsoonal estuaries due to variable characteristics of the catchment area and volume of discharge. It is estimated that the Indian monsoonal estuaries transport ~2.37 ± 0.47 Tg (1 Tg = 1012 g) of DOC and ~0.41 ± 0.08 Tg of DON during wet period to the northern Indian Ocean. The Bay of Bengal receives 3 times higher DOC and DON (1.82 and 0.30 Tg, respectively) than the Arabian Sea (0.55 and 0.11 Tg). Catchment area normalized fluxes of DOC and DON were found to be higher in the estuaries located in the southwestern than the estuaries from other regions of India. It was attributed to relatively higher soil organic carbon, biomass carbon, and heavy rainfall in catchment areas of the rivers from the former region. It has been noticed that neither catchment area nor discharge volume of the river controls the fluxes of DOC and DON to the northern Indian Ocean. Since the total load of DOC and DON is strongly linked to the volume of discharge, alterations in the freshwater discharge due to natural or anthropogenic activities may have significant influence on organic matter fluxes to the Indian coastal waters and its impact on microbial food web dynamics needs further evaluation.

Variability of hydrological extreme events in East Asia and their dynamical control: a comparison between observations and two high-resolution global climate models

NASA Astrophysics Data System (ADS)

Freychet, N.; Duchez, A.; Wu, C.-H.; Chen, C.-A.; Hsu, H.-H.; Hirschi, J.; Forryan, A.; Sinha, B.; New, A. L.; Graham, T.; Andrews, M. B.; Tu, C.-Y.; Lin, S.-J.

2017-02-01

This work investigates the variability of extreme weather events (drought spells, DS15, and daily heavy rainfall, PR99) over East Asia. It particularly focuses on the large scale atmospheric circulation associated with high levels of the occurrence of these extreme events. Two observational datasets (APHRODITE and PERSIANN) are compared with two high-resolution global climate models (HiRAM and HadGEM3-GC2) and an ensemble of other lower resolution climate models from CMIP5. We first evaluate the performance of the high resolution models. They both exhibit good skill in reproducing extreme events, especially when compared with CMIP5 results. Significant differences exist between the two observational datasets, highlighting the difficulty of having a clear estimate of extreme events. The link between the variability of the extremes and the large scale circulation is investigated, on monthly and interannual timescales, using composite and correlation analyses. Both extreme indices DS15 and PR99 are significantly linked to the low level wind intensity over East Asia, i.e. the monsoon circulation. It is also found that DS15 events are strongly linked to the surface temperature over the Siberian region and to the land-sea pressure contrast, while PR99 events are linked to the sea surface temperature anomalies over the West North Pacific. These results illustrate the importance of the monsoon circulation on extremes over East Asia. The dependencies on of the surface temperature over the continent and the sea surface temperature raise the question as to what extent they could affect the occurrence of extremes over tropical regions in future projections.

Generation of a mouse scFv library specific for porcine aminopeptidase N using the T7 phage display system.

PubMed

Sun, Dongbo; Shi, Hongyan; Chen, Jianfei; Shi, Da; Zhu, Qinghe; Zhang, Hong; Liu, Shengwang; Wang, Yunfeng; Qiu, Huaji; Feng, Li

2012-06-01

Porcine aminopeptidase N (pAPN) is a common cellular receptor for swine transmissible gastroenteritis virus (TGEV) and porcine epidemic diarrhea virus (PEDV). To investigate single-chain fragment variable (scFv) repertoire against pAPN, the genes encoding the immunoglobulin light chain variable region (VL) and heavy chain variable region (VH) were amplified by reverse transcript polymerase chain reaction (RT-PCR) using a series of degenerate primers from the spleen of BABL/c mice immunized with native pAPN. The VL and VH amplicons were combined randomly by a 12 amino acid flexible linker by splicing by overlap extension PCR (SOE-PCR), which produced the scFv gene repertoire. After ligation of the scFv gene repertoire into the T7Select10-3b vector, a mouse scFv phage library specific for pAPN was produced through in vitro packaging. The primary scFv library against pAPN contained 2.0×10(7) recombinant phage clones, and the titer of the amplified library was 3.6×10(9)pfu/mL. BstNI restriction analysis and DNA sequencing revealed that 28 phage clones from the primary pAPN scFv library showed excellent diversity. The effectiveness of the scFv library against pAPN was verified further by phage ELISA using the recombinant protein of the pAPN C subunit as coating antigen. The construction and evaluation of a murine scFv library against the common receptor pAPN of porcine coronaviruses TGEV and PEDV using the T7 phage display system are described. Copyright © 2012 Elsevier B.V. All rights reserved.

Selecting seats for steel industry mobile machines based on seat effective amplitude transmissibility and comfort.

PubMed

Conrad, Leanne F; Oliver, Michele L; Jack, Robert J; Dickey, James P; Eger, Tammy R

2014-01-01

The purpose of this work was to help a steel industry partner select the most appropriate of three high end heavy equipment seats to retrofit a number of their heavy mobile machines used in the steel making process. The participants included 8 males (22.3 ± 2.0 yrs.) and 8 females (23.5 ± 1.8 yrs.) with no experience operating heavy mobile equipment. Previously recorded 6-DOF chassis acceleration data from a Pot Hauler (a machine which picks up and transports pots of slag) were used to extract six, 20 second representative profiles for implementation on a lab-based heavy machine simulator (6-DOF Parallel Robotics System Corporation robot). Subjects sat on three heavy equipment seats (BeGe7150, Grammar MSG 95G1721, and a 6801 Isringhausen with the seat pan cushion retrofitted with a Skydex cushion) mounted on the simulator. Each subject completed three trials for each combination of seat (n=3) and vibration profile (n=6). Chassis and operator/seat interface vibration were measured by 2, 6-DOF vibration transducers. Variables included Seat Effective Amplitude Transmissibility (SEAT) (X,Y,Z,Roll,Pitch,Yaw,6DOF Vector Sum) to determine if the seat was attenuating or amplifying the vibration, 6-degree of freedom (DOF) vibration total value weighted predicted comfort (Avc) (according to ISO 2631-1) and operator reported comfort (ORC). Factorial ANOVAs revealed significant differences (p < or = 0.05) between seats for all SEAT variables but different seats performed better than others depending on the axis. Significant differences between males and females were observed for SEAT in X,Y, and Pitch as well as for Avs. As expected there were significant differences between vibration profiles for all assessed variables. A number of interaction effects were observed, the most frequently occurring of which was between seat and vibration profile. Based upon the number of seat and vibration profile interactions, results suggest that a single seat is not suited for all tested conditions. However, SEAT values for all of the seats tested were extremely low (e.g., 6-DOF SEAT < 30%) indicating that all of the seats were capable of providing good vibration attenuation.

Heavy element production in inhomogeneous big bang nucleosynthesis

DOE Office of Scientific and Technical Information (OSTI.GOV)

Matsuura, Shunji; Fujimoto, Shin-ichirou; Nishimura, Sunao

2005-12-15

We present a new astrophysical site of the big bang nucleosynthesis (BBN) that are very peculiar compared with the standard BBN. Some models of the baryogenesis suggest that very high baryon density regions were formed in the early universe. On the other hand, recent observations suggest that heavy elements already exist in high red-shifts and the origin of these elements become a big puzzle. Motivated by these, we investigate BBN in very high baryon density regions. BBN proceeds in proton-rich environment, which is known to be like the p-process. However, by taking very heavy nuclei into account, we find thatmore » BBN proceeds through both the p-process and the r-process simultaneously. P-nuclei such as {sup 92}Mo, {sup 94}Mo, {sup 96}Ru, {sup 98}Ru whose origin is not well known are also synthesized.« less

Bibliography on Cold Regions Science and Technology. Cumulative Author Index. Volumes 38-42

DTIC Science & Technology

1988-12-01

pollution by heavy metals [1985, p.15-18, rusj 40-2749 Bad’lanova, L.I. Deformation properties of washed-up sands under permafrost conditions [1986...Columbia {I987, 93p.. engj 41-4530 DobrodMv. O.P. First result» of studying iphagnum moil« and high-bog peat for atmoepheric pollution by heavy metals ...central Yakutia [1988, p.124-130, ru»] 42-3968 Gravanhorst, G. Firn sampling for heavy metals [1983. p.33-33, gerj 38-1663 Gravcnor, C.P. Origin and

Uses of monoclonial antibody 8H9

DOEpatents

Cheung, Nai-Kong V.

2015-06-23

This invention provides an antibody that binds the same antigen as that of monoclonal antibody 8H9, wherein the heavy chain CDR (Complementary Determining Region)1 comprises NYDIN, heavy chain CDR2 comprises WIFPGDGSTQY, heavy chain CDR3 comprises QTTATWFAY, and the light chain CDR1 comprises RASQSISDYLH, light chain CDR2 comprises YASQSIS, and light chain CDR3 comprises QNGHSFPLT. In another embodiment, there is provided a polypeptide that binds the same antigen as that of monoclonal antibody 8H9, wherein the polypeptide comprises NYDIN, WIFPGDGSTQY, QTTATWFAY, RASQSISDYLH, YASQSIS, and QNGHSFPLT.

Exploration for heavy crude oil and natural bitumen

DOE Office of Scientific and Technical Information (OSTI.GOV)

Not Available

1989-01-01

Heavy oil and tar sand reserves are enormous, and this 700-page volume breaks the topic down into six emphasis areas of: regional resources worldwide; characterization, maturation, and degradation; geological environments and migration; exploration methods; exploration histories; and recovery. An appendix presents a guidebook to Santa Maria, Cuyama, Taft-McKettrick, and Edna oil districts, Coast Ranges, California.

Early results from the ultra heavy cosmic ray experiment

NASA Technical Reports Server (NTRS)

Osullivan, D.; Thompson, A.; Bosch, J.; Keegan, R.; Wenzel, K.-P.; Jansen, F.; Domingo, C.

1995-01-01

Data extraction and analysis of the LDEF Ultra Heavy Cosmic Ray Experiment is continuing. Almost twice the pre LDEF world sample has been investigated and some details of the charge spectrum in the region from Z approximately 70 up to and including the actinides are presented. The early results indicate r process enhancement over solar system source abundances.

Interaction of Soil Heavy Metal Pollution with Industrialisation and the Landscape Pattern in Taiyuan City, China

PubMed Central

Liu, Yong; Su, Chao; Zhang, Hong; Li, Xiaoting; Pei, Jingfei

2014-01-01

Many studies indicated that industrialization and urbanization caused serious soil heavy metal pollution from industrialized age. However, fewer previous studies have conducted a combined analysis of the landscape pattern, urbanization, industrialization, and heavy metal pollution. This paper was aimed at exploring the relationships of heavy metals in the soil (Pb, Cu, Ni, As, Cd, Cr, Hg, and Zn) with landscape pattern, industrialisation, urbanisation in Taiyuan city using multivariate analysis. The multivariate analysis included correlation analysis, analysis of variance (ANOVA), independent-sample T test, and principal component analysis (PCA). Geographic information system (GIS) was also applied to determine the spatial distribution of the heavy metals. The spatial distribution maps showed that the heavy metal pollution of the soil was more serious in the centre of the study area. The results of the multivariate analysis indicated that the correlations among heavy metals were significant, and industrialisation could significantly affect the concentrations of some heavy metals. Landscape diversity showed a significant negative correlation with the heavy metal concentrations. The PCA showed that a two-factor model for heavy metal pollution, industrialisation, and the landscape pattern could effectively demonstrate the relationships between these variables. The model explained 86.71% of the total variance of the data. Moreover, the first factor was mainly loaded with the comprehensive pollution index (P), and the second factor was primarily loaded with landscape diversity and dominance (H and D). An ordination of 80 samples could show the pollution pattern of all the samples. The results revealed that local industrialisation caused heavy metal pollution of the soil, but such pollution could respond negatively to the landscape pattern. The results of the study could provide a basis for agricultural, suburban, and urban planning. PMID:25251460

Interaction of soil heavy metal pollution with industrialisation and the landscape pattern in Taiyuan city, China.

PubMed

Liu, Yong; Su, Chao; Zhang, Hong; Li, Xiaoting; Pei, Jingfei

2014-01-01

Many studies indicated that industrialization and urbanization caused serious soil heavy metal pollution from industrialized age. However, fewer previous studies have conducted a combined analysis of the landscape pattern, urbanization, industrialization, and heavy metal pollution. This paper was aimed at exploring the relationships of heavy metals in the soil (Pb, Cu, Ni, As, Cd, Cr, Hg, and Zn) with landscape pattern, industrialisation, urbanisation in Taiyuan city using multivariate analysis. The multivariate analysis included correlation analysis, analysis of variance (ANOVA), independent-sample T test, and principal component analysis (PCA). Geographic information system (GIS) was also applied to determine the spatial distribution of the heavy metals. The spatial distribution maps showed that the heavy metal pollution of the soil was more serious in the centre of the study area. The results of the multivariate analysis indicated that the correlations among heavy metals were significant, and industrialisation could significantly affect the concentrations of some heavy metals. Landscape diversity showed a significant negative correlation with the heavy metal concentrations. The PCA showed that a two-factor model for heavy metal pollution, industrialisation, and the landscape pattern could effectively demonstrate the relationships between these variables. The model explained 86.71% of the total variance of the data. Moreover, the first factor was mainly loaded with the comprehensive pollution index (P), and the second factor was primarily loaded with landscape diversity and dominance (H and D). An ordination of 80 samples could show the pollution pattern of all the samples. The results revealed that local industrialisation caused heavy metal pollution of the soil, but such pollution could respond negatively to the landscape pattern. The results of the study could provide a basis for agricultural, suburban, and urban planning.

Modelling heavy metals build-up on urban road surfaces for effective stormwater reuse strategy implementation.

PubMed

Hong, Nian; Zhu, Panfeng; Liu, An

2017-12-01

Urban road stormwater is an alternative water resource to mitigate water shortage issues in the worldwide. Heavy metals deposited (build-up) on urban road surface can enter road stormwater runoff, undermining stormwater reuse safety. As heavy metal build-up loads perform high variabilities in terms of spatial distribution and is strongly influenced by surrounding land uses, it is essential to develop an approach to identify hot-spots where stormwater runoff could include high heavy metal concentrations and hence cannot be reused if it is not properly treated. This study developed a robust modelling approach to estimating heavy metal build-up loads on urban roads using land use fractions (representing percentages of land uses within a given area) by an artificial neural network (ANN) model technique. Based on the modelling results, a series of heavy metal load spatial distribution maps and a comprehensive ecological risk map were generated. These maps provided a visualization platform to identify priority areas where the stormwater can be safely reused. Additionally, these maps can be utilized as an urban land use planning tool in the context of effective stormwater reuse strategy implementation. Copyright © 2017 Elsevier Ltd. All rights reserved.

Effects of color temperatures (Kelvin) of LED bulbs on blood physiological variables of broilers grown to heavy weights.

PubMed

Olanrewaju, H A; Purswell, J L; Collier, S D; Branton, S L

2015-08-01

Light-emitting diode (LED) lighting is being used in the poultry industry to reduce energy usage in broiler production facilities. However, limited data are available comparing efficacy of different spectral distribution of LED bulbs on blood physiological variables of broilers grown to heavy weights (>3 kg). The present study evaluated the effects of color temperature (Kelvin) of LED bulbs on blood physiological variables of heavy broilers in 2 trials with 4 replicates/trial. The study was a randomized complete block design. Four light treatments consisted of 3 LED light bulbs [2,700 K, (Warm-LED); 5,000 K, (Cool-LED-#1); 5,000 K, (Cool-LED-#2)] and incandescent light (ICD, standard) from 1 to 56 d age. A total of 960 1-day-old Ross × Ross 708 chicks (30 males/room 30 females/room) were equally and randomly distributed among 16 environmentally controlled rooms at 50% RH. Each of the 4 treatments was represented by 4 rooms. Feed and water were provided ad libitum. All treatment groups were provided the same diet. Venous blood samples were collected on d 21, 28, 42, and 56 for immediate analysis of selected physiological variables and plasma collection. In comparison with ICD, Cool-LED-#1 had greater (P < 0.05) effects on pH, partial pressure of CO₂(pCO₂), partial pressure of O₂(pO₂), saturated O₂(sO₂), and K⁺. However, all these acid-base changes remained within the normal venous acid-base homeostasis and physiological ranges. In addition, no effect of treatments was observed on HCO(3)(-), hematocrit (Hct), hemoglobin (Hb), Na⁺, Ca²⁺, Cl⁻, mean corpuscular hemoglobin concentration (McHc), osmolality, and anion gap. Moreover, blood glucose concentrations were not affected by treatments. This study shows that the 3 LED light bulbs evaluated in this study may be suitable for replacement of ICD light sources in commercial poultry facilities to reduce energy cost and optimize production efficiency without inducing physiological stress on broilers grown to heavy weights. © 2015 Poultry Science Association Inc.

A Population-Based Study on Alcohol and High-Risk Sexual Behaviors in Botswana

PubMed Central

Weiser, Sheri D; Leiter, Karen; Heisler, Michele; McFarland, Willi; Korte, Fiona Percy-de; DeMonner, Sonya M; Tlou, Sheila; Phaladze, Nthabiseng; Iacopino, Vincent; Bangsberg, David R

2006-01-01

Background In Botswana, an estimated 24% of adults ages 15–49 years are infected with HIV. While alcohol use is strongly associated with HIV infection in Africa, few population-based studies have characterized the association of alcohol use with specific high-risk sexual behaviors. Methods and Findings We conducted a cross-sectional, population-based study of 1,268 adults from five districts in Botswana using a stratified two-stage probability sample design. Multivariate logistic regression was used to assess correlates of heavy alcohol consumption (>14 drinks/week for women, and >21 drinks/week for men) as a dependent variable. We also assessed gender-specific associations between alcohol use as a primary independent variable (categorized as none, moderate, problem and heavy drinking) and several risky sex outcomes including: (a) having unprotected sex with a nonmonogamous partner; (b) having multiple sexual partners; and (c) paying for or selling sex in exchange for money or other resources. Criteria for heavy drinking were met by 31% of men and 17% of women. Adjusted correlates of heavy alcohol use included male gender, intergenerational relationships (age gap ≥10 y), higher education, and living with a sexual partner. Among men, heavy alcohol use was associated with higher odds of all risky sex outcomes examined, including unprotected sex (AOR = 3.48; 95% confidence interval [CI], 1.65 to 7.32), multiple partners (AOR = 3.08; 95% CI, 1.95 to 4.87), and paying for sex (AOR = 3.65; 95% CI, 2.58 to 12.37). Similarly, among women, heavy alcohol consumption was associated with higher odds of unprotected sex (AOR = 3.28; 95% CI, 1.71 to 6.28), multiple partners (AOR = 3.05; 95% CI, 1.83 to 5.07), and selling sex (AOR = 8.50; 95% CI, 3.41 to 21.18). A dose-response relationship was seen between alcohol use and risky sexual behaviors, with moderate drinkers at lower risk than both problem and heavy drinkers. Conclusions Alcohol use is associated with multiple risks for HIV transmission among both men and women. The findings of this study underscore the need to integrate alcohol abuse and HIV prevention efforts in Botswana and elsewhere. PMID:17032060

Behavioral, health and psychosocial factors and risk for HIV infection among sexually active homosexual men: the Multicenter AIDS Cohort Study.

PubMed Central

Penkower, L; Dew, M A; Kingsley, L; Becker, J T; Satz, P; Schaerf, F W; Sheridan, K

1991-01-01

We examined whether 644 homosexual men who engaged in receptive anal intercourse were at particularly elevated risk for seroconversion if they also possessed specific behavioral, health or psychosocial vulnerability characteristics. Of 11 potential factors examined, heavy drinking, moderate to heavy drug use, and younger age were significantly related to seroconversion. These variables were also associated with an increased number of sexual partners, anonymous sex, and failure to use condoms. PMID:1990857

Activities report in nuclear physics and particle acceleration

NASA Astrophysics Data System (ADS)

Jansen, J. F. W.; Demeijer, R. J.

1984-04-01

Research on nuclear resonances; charge transfer; breakup of light and heavy ions; reaction mechanisms of heavy ion collisions; high-spin states; and fundamental symmetries in weak interactions are outlined. Group theoretical methods applied to supersymmetries; phenomenological description of rotation-vibration coupling; a microscopic theory of collective variables; the binding energy of hydrogen adsorbed on stepped platinium; and single electron capture are discussed. Isotopes for nuclear medicine, for off-line nuclear spectroscopy work, and for the study of hyperfine interactions were produced.

Environmental impact of heavy metals on the soils and plants around a coke-making factory of Jiyuan city, China

NASA Astrophysics Data System (ADS)

Lun Leung, Kwun

2010-05-01

The combustion of coal usually leads to many different kinds of pollution around coke-making factories. Among these pollutions, the heavy metal contamination in the soil and plants is one of the major concerns by people living around. Heavy metals are highly attracted to the biological tissue, and can stay in bodies of organisms for long period of time, causing a lot of hazardous diseases to human beings, animal and plants. In the developing regions of China, developing of industries has been based on the sacrifices of environments and human health. In order to evaluate the danger of heavy metal contamination from a coke factory to citizens of close inhabitants, a survey on soil and plants was conducted in the region around a coke-making factory in Jiyuan city, which is a major electricity supplying city for the Henan Province in China. In this study, 8 surface soil samples and 11 plant samples were collected from 8 different places around the coke-making factory in Jiyuan city. The collected samples are then treated in the laboratory, and 8 types of heavy metals, which include arsenic, cadmium, chromium, cobalt, copper, lead, nickel and zinc, are analyzed by Inductively Coupled Plasma Mass Spectrometry (ICP-MS) and Inductively Coupled Plasma Atomic Emission Spectroscopy (ICP-AES). The concentration data of heavy metals that collected from the analysis are then used to evaluate their toxicity towards living organisms and ecology by applying several biological effect standards, such as effect-range low (ERL), effect-range median (ERM) and several maximum allowances standards of heavy metal concentrations in soils and plants that established by different countries. Moreover, the relationship between the distance from the factory and the concentration of heavy metals in soils and plants are also evaluated in order to find out the contamination ranges of those heavy metals from the source. The result shows that the concentration of these 8 types of heavy metals in the site exceeds the ERL, with lead being the heavy metals that exceeds the biological effect standards the most. This study suggests some remediate measures that must be made in order to decrease the emission of these elements to meet the national standards. The local government is now realized the problems and begins to limit the emissions and offers medical treatments to kids detected with high blood lead.

Future snowfall in the Alps: projections based on the EURO-CORDEX regional climate models

NASA Astrophysics Data System (ADS)

Frei, Prisco; Kotlarski, Sven; Liniger, Mark A.; Schär, Christoph

2018-01-01

Twenty-first century snowfall changes over the European Alps are assessed based on high-resolution regional climate model (RCM) data made available through the EURO-CORDEX initiative. Fourteen different combinations of global and regional climate models with a target resolution of 12 km and two different emission scenarios are considered. As raw snowfall amounts are not provided by all RCMs, a newly developed method to separate snowfall from total precipitation based on near-surface temperature conditions and accounting for subgrid-scale topographic variability is employed. The evaluation of the simulated snowfall amounts against an observation-based reference indicates the ability of RCMs to capture the main characteristics of the snowfall seasonal cycle and its elevation dependency but also reveals considerable positive biases especially at high elevations. These biases can partly be removed by the application of a dedicated RCM bias adjustment that separately considers temperature and precipitation biases.

Snowfall projections reveal a robust signal of decreasing snowfall amounts over most parts of the Alps for both emission scenarios. Domain and multi-model mean decreases in mean September-May snowfall by the end of the century amount to -25 and -45 % for representative concentration pathway (RCP) scenarios RCP4.5 and RCP8.5, respectively. Snowfall in low-lying areas in the Alpine forelands could be reduced by more than -80 %. These decreases are driven by the projected warming and are strongly connected to an important decrease in snowfall frequency and snowfall fraction and are also apparent for heavy snowfall events. In contrast, high-elevation regions could experience slight snowfall increases in midwinter for both emission scenarios despite the general decrease in the snowfall fraction. These increases in mean and heavy snowfall can be explained by a general increase in winter precipitation and by the fact that, with increasing temperatures, climatologically cold areas are shifted into a temperature interval which favours higher snowfall intensities. In general, percentage changes in snowfall indices are robust with respect to the RCM postprocessing strategy employed: similar results are obtained for raw, separated, and separated-bias-adjusted snowfall amounts. Absolute changes, however, can differ among these three methods.

Analysis of a long-term measurement of air pollutants (2007-2011) in North China Plain (NCP); Impact of emission reduction during the Beijing Olympic Games.

PubMed

Xu, Ruiguang; Tang, Guiqian; Wang, Yuesi; Tie, Xuexi

2016-09-01

Five years measurements were used to evaluate the effect of emission controls on the changes of air pollutants in Beijing and its surroundings in the NCP during 2008 Olympic Games (2008OG). The major challenge of this study was to filter out the effect of variability of meteorological conditions, when compared the air pollutants during the game to non-game period. We used four-year (2007, 2009-2011) average as the Non-2008OG to smooth the temporal variability caused by meteorological parameters. To study the spatial variability and regional transport, 6 sites (urban, rural, a mega city, a heavy industrial city, and a remote site) were selected. The result showed that the annually meteorological variability was significantly reduced. Such as, in BJ the differences between 2008OG and 5-years averaged values were 2.7% for relative humidity and 0.6% for wind speed. As a result, the anomaly of air pollutants between 2008OG and Non-2008OG can largely attribute to the emission control. The comparison showed that the major pollutants (PM10, PM2.5, NO, NOx) at the 6 sites in 2008OG were consistently lowered. For example, PM2.5 in BJ decreased from 75 to 45 μg/m(3) (40% reduction). However, the emission controls had minor effect on O3 concentrations (1% reduction). In contrast, the O3 precursor (NOx) reduced from 19.7 to 13.2 ppb (33% reduction). The in-sensitivity between NOx and O3 suggested that the O3 formation was under VOCs control condition in NCP, showing that strong VOC emission control is needed in order to significantly reduce O3 concentration in the region. Copyright © 2016 Elsevier Ltd. All rights reserved.

Gladiolus plants transformed with single-chain variable fragment antibodies to Cucumber mosaic virus

USDA-ARS?s Scientific Manuscript database

Transgenic plants of Gladiolus ‘Peter Pears’ or ‘Jenny Lee’ were developed that contain single-chain variable fragments (scFv) to Cucumber mosaic virus (CMV) subgroup I or II. The CMV subgroup I heavy and light chain scFv fragments were placed under control of either the duplicated CaMV 35S or suga...

Development of a heavy duty portable variable power supply (HPVPS)

NASA Astrophysics Data System (ADS)

Musa, Ahmad Zulfadli Bin; Lung, Chong Man; Abidin, Wan'Amirah Basyarah Binti Zainol

2017-08-01

This paper covers the innovation of a Heavy Duty Portable Variable Power Supply (HPVPS) in Jabatan Kejuruteraan Elektrik (JKE), Politeknik Mukah, Sarawak (PMU). This project consists of variable power supply which can vary the output from 1.2 V to 11.6V, AC pure wave inverter to convert DC to AC for the operation of low power home appliances and also used Li-on rechargeable batteries to store the electrical energy and additional feature that can be used to jump-start the batteries of the car. The main objective of this project is to make the user can operate the electronic devices anywhere whenever if no electricity while doing their lab activities. Most of the regulated power supply in JKE lab aged 9-10 years old and need periodical maintenance and need cost and also the unit can be used is not enough to support the whole class during lab activities. As a result, the P&P process will be facing the major problem in order to make the lab activities running smoothly. By development of the portable variable power supply, the P&P process is more efficient and very helpful.

Expansion of the Preimmune Antibody Repertoire by Junctional Diversity in Bos taurus

PubMed Central

Liljavirta, Jenni; Niku, Mikael; Pessa-Morikawa, Tiina; Ekman, Anna; Iivanainen, Antti

2014-01-01

Cattle have a limited range of immunoglobulin genes which are further diversified by antigen independent somatic hypermutation in fetuses. Junctional diversity generated during somatic recombination contributes to antibody diversity but its relative significance has not been comprehensively studied. We have investigated the importance of terminal deoxynucleotidyl transferase (TdT) -mediated junctional diversity to the bovine immunoglobulin repertoire. We also searched for new bovine heavy chain diversity (IGHD) genes as the information of the germline sequences is essential to define the junctional boundaries between gene segments. New heavy chain variable genes (IGHV) were explored to address the gene usage in the fetal recombinations. Our bioinformatics search revealed five new IGHD genes, which included the longest IGHD reported so far, 154 bp. By genomic sequencing we found 26 new IGHV sequences that represent potentially new IGHV genes or allelic variants. Sequence analysis of immunoglobulin heavy chain cDNA libraries of fetal bone marrow, ileum and spleen showed 0 to 36 nontemplated N-nucleotide additions between variable, diversity and joining genes. A maximum of 8 N nucleotides were also identified in the light chains. The junctional base profile was biased towards A and T nucleotide additions (64% in heavy chain VD, 52% in heavy chain DJ and 61% in light chain VJ junctions) in contrast to the high G/C content which is usually observed in mice. Sequence analysis also revealed extensive exonuclease activity, providing additional diversity. B-lymphocyte specific TdT expression was detected in bovine fetal bone marrow by reverse transcription-qPCR and immunofluorescence. These results suggest that TdT-mediated junctional diversity and exonuclease activity contribute significantly to the size of the cattle preimmune antibody repertoire already in the fetal period. PMID:24926997

Studies of thermostability in Camelus bactrianus (Bactrian camel) single-domain antibody specific for the mutant epidermal-growth-factor receptor expressed by Pichia.

PubMed

Omidfar, Kobra; Rasaee, Mohhamad Javad; Kashanian, Soheila; Paknejad, Malieheh; Bathaie, Zahra

2007-01-01

Camelids have a unique immune system capable of producing heavy-chain antibodies lacking the light chains and CH1 (constant heavy-chain domain 1). It has been shown that, in contrast with conventional antibody fragments, the variable domains of these heavy-chain antibodies are functional at or after exposure to high temperatures. In the present study, the VHH (variable domain of heavy-chain antibody) camel antibody was subcloned into vector Ppiczc and expressed in Pichia pastoris. ORB1-83 VHH antibody recognizes the external domain of the mutant EGFR [EGF (epidermal growth factor) receptor], EGFR VIII. This tumour-specific antigen is ligand-independent, contains a constitutively active tyrosine kinase domain and has been shown to be present in a number of human malignancies. We report here that, although expression from P. pastoris resulted in a significantly increased level of expression of the anti-EGFR VIII VHH antibodies compared with Escherichia coli [Omidfar, Rasaee, Modjtahedi, Forouzandeh, Taghikhani, Bakhtiari, Paknejad and Kashanian (2004) Tumor Biol. 25, 179-187; Omidfar, Rasaee, Modjtahedi, Forouzandeh, Taghikhani and Golmakany (2004) Tumor Biol. 25, 296-305], this antibody selectively bound to the EGFR VIII peptide and reacted specifically with the immunoaffinity-purified antigen from non-small-cell lung cancer. Furthermore, thermal denaturation stability and CD spectra analysis of the Camelus bactrianus (Bactrian camel) VHH and heavy-chain antibodies at different temperature proved reversibility and binding activity after heat denaturation. Our results indicate that the P. pastoris expression system may be useful for the expression of camel single domain antibody and the ability of the expressed protein to reversibly melt without aggregation, allowing it to regain binding activity after heat denaturation.

Spin degeneracy of Hadronic molecules in the heavy quark region

NASA Astrophysics Data System (ADS)

Yamaguchi, Yasuhiro

2018-03-01

Hadronic molecules have been considered to appear close to the hadron-hadron threshold. For the heavy mesons, \\bar D and B, the one pion exchange potential is enhanced by the mass degeneracy of heavy pseudoscalar and vector mesons, caused by the heavy quark spin symmetry. In this study, we investigate new hadronic molecules formed by the heavy meson {P≤ft( * \\right)} = {\\bar D≤ft( * \\right)},{B≤ft( * \\right)} and a nucleon N, being P (*) N. As the interaction between P (*) and N, the pion and vector meson (ρ and ω) exchanges are considered. By solving the coupled-channel Schrödinger equations for P N and P*N, we obtain the bound and resonant states in the charm and bottom sectors, and in the in nite heavy quark mass limit. In the molecular states, the PN - P*N mixing effect is important, where the tensor force of the one pion exchange potential generates the strong attraction. In the heavy quark limit, we obtain the degeneracy of the states for J P = 1/2- and 3/2-.

Health and ecological risk assessment of heavy metals pollution in an antimony mining region: a case study from South China.

PubMed

Fei, Jiang-Chi; Min, Xiao-Bo; Wang, Zhen-Xing; Pang, Zhi-Hua; Liang, Yan-Jie; Ke, Yong

2017-12-01

In recent years, international research on the toxicity of the heavy metal, antimony, has gradually changed focus from early medical and pharmacological toxicology to environmental toxicology and ecotoxicology. However, little research has been conducted for sources identification and risk management of heavy metals pollution by long-term antimony mining activities. In this study, a large number of investigations were conducted on the temporal and spatial distribution of antimony and related heavy metal contaminants (lead, zinc, and arsenic), as well as on the exposure risks for the population for the Yuxi river basin in the Hunan province, China. The scope of the investigations included mine water, waste rock, tailings, agricultural soil, surface water, river sediments, and groundwater sources of drinking water. Health and ecological risks from exposure to heavy metal pollution were evaluated. The main pollution sources of heavy metals in the Yuxi River basin were analyzed. Remediation programs and risk management strategies for heavy metal pollution were consequently proposed. This article provides a scientific basis for the risk assessment and management of heavy metal pollution caused by antimony basin ore mining.

Characterisation of an engineered trastuzumab IgE antibody and effector cell mechanisms targeting HER2/neu-positive tumour cells

PubMed Central

2010-01-01

Trastuzumab (Herceptin®), a humanized IgG1 antibody raised against the human epidermal growth factor receptor 2 (HER2/neu), is the main antibody in clinical use against breast cancer. Pre-clinical evidence and clinical studies indicate that trastuzumab employs several anti-tumour mechanisms that most likely contribute to enhanced survival of patients with HER2/neu-positive breast carcinomas. New strategies are aimed at improving antibody-based therapeutics like trastuzumab, e.g. by enhancing antibody-mediated effector function mechanisms. Based on our previous findings that a chimaeric ovarian tumour antigen-specific IgE antibody showed greater efficacy in tumour cell killing, compared to the corresponding IgG1 antibody, we have produced an IgE homologue of trastuzumab. Trastuzumab IgE was engineered with the same light- and heavy-chain variable-regions as trastuzumab, but with an epsilon in place of the gamma-1 heavy-chain constant region. We describe the physical characterisation and ligand binding properties of the trastuzumab IgE and elucidate its potential anti-tumour activities in functional assays. Both trastuzumab and trastuzumab IgE can activate monocytic cells to kill tumour cells, but they operate by different mechanisms: trastuzumab functions in antibody-dependent cell-mediated phagocytosis (ADCP), whereas trastuzumab IgE functions in antibody-dependent cell-mediated cytotoxicity (ADCC). Trastuzumab IgE, incubated with mast cells and HER2/neu-expressing tumour cells, triggers mast cell degranulation, recruiting against cancer cells a potent immune response, characteristic of allergic reactions. Finally, in viability assays both antibodies mediate comparable levels of tumour cell growth arrest. These functional characteristics of trastuzumab IgE, some distinct from those of trastuzumab, indicate its potential to complement or improve upon the existing clinical benefits of trastuzumab. PMID:18941743

IgM anti-myeloperoxidase antibody-secreting lymphocytes are present in the peripheral repertoire of lupus mice but rarely differentiate into IgG-producing cells

PubMed Central

Vittecoq, O; Brard, F; Jovelin, F; Le Loet, X; Tron, F; Gilbert, D

1999-01-01

Two IgM, κ anti-myeloperoxidase (MPO) monoclonal antibodies, 6D6 and 9B5, bound to MPO in a solid-phase enzyme-linked immunosorbent assay were derived from the splenocytes of (NZB × NZW) F1 and MRL/lpr-lpr mice, respectively. 6D6 gave a characteristic perinuclear immunofluorescence staining pattern on ethanol-fixed human neutrophils, bound to the native form of MPO by immunoblotting and had a high constant affinity for MPO as demonstrated by real-time specific interaction. 9B5 produced a cytoplasmic immunofluorescence staining pattern, reacted with the heavy chain of MPO and had a low constant affinity for MPO. The heavy-and light-chain variable region genes of monoclonal antibodies (mAb) 6D6 and 9B5 were sequenced and found to be highly homologous to germline genes and to contain negatively charged amino acids in the complementarity determining regions. IgM MPO-binding activity was observed in most BW and MRL/lpr-lpr mouse sera, which may correspond to polyclonal activation of B cells, whereas IgG anti-MPO antibodies could be rarely detected. Thus, this study indicates that (i) BW and MRL/lpr-lpr mice do not delete IgM anti-MPO secreting B cells, do not maintain these B cells in a state of anergy, but most individuals are not able to spontaneously induce the class-switching of this autoantibody population; (ii) IgM anti-MPO antibodies can recognize different epitopes on MPO and produce different immunofluorescence staining pattern on ethanol-fixed human neutrophils, as demonstrated by the immunochemical properties of the two lupus-mouse derived mAb. PMID:10540169

Thermodynamic and dynamic contributions to future changes in summer precipitation over Northeast Asia and Korea: a multi-RCM study

NASA Astrophysics Data System (ADS)

Lee, Donghyun; Min, Seung-Ki; Jin, Jonghun; Lee, Ji-Woo; Cha, Dong-Hyun; Suh, Myoung-Seok; Ahn, Joong-Bae; Hong, Song-You; Kang, Hyun-Suk; Joh, Minsu

2017-12-01

This study examines future changes in precipitation over Northeast Asia and Korea using five regional climate model (RCM) simulations driven by single global climate model (GCM) under two representative concentration pathway (RCP) emission scenarios. Focusing on summer season (June-July-August) when heavy rains dominate in this region, future changes in precipitation and associated variables including temperature, moisture, and winds are analyzed by comparing future conditions (2071-2100) with a present climate (1981-2005). Physical mechanisms are examined by analyzing moisture flux convergence at 850 hPa level, which is found to have a close relationship to precipitation and by assessing contribution of thermodynamic effect (TH, moisture increase due to warming) and dynamic effect (DY, atmospheric circulation change) to changes in the moisture flux convergence. Overall background warming and moistening are projected over the Northeast Asia with a good inter-RCM agreement, indicating dominant influence of the driving GCM. Also, RCMs consistently project increases in the frequency of heavy rains and the intensification of extreme precipitation over South Korea. Analysis of moisture flux convergence reveals competing impacts between TH and DY. The TH effect contributes to the overall increases in mean precipitation over Northeast Asia and in extreme precipitation over South Korea, irrespective of models and scenarios. However, DY effect is found to induce local-scale precipitation decreases over the central part of the Korean Peninsula with large inter-RCM and inter-scenario differences. Composite analysis of daily anomaly synoptic patterns indicates that extreme precipitation events are mainly associated with the southwest to northeast evolution of large-scale low-pressure system in both present and future climates.

Impacts of Aerosol-Monsoon Interaction on Rainfall and Circulation over Northern India and the Himalaya Foothills

NASA Technical Reports Server (NTRS)

Lau, William K. M.; Kim, Kyu-Myong; Shi, Jainn-Jong; Matsui, T.; Chin, M.; Tan, Qian; Peters-Lidard, C.; Tao, W. K.

2016-01-01

The boreal summer of 2008 was unusual for the Indian monsoon, featuring exceptional heavy loading of dust aerosols over the Arabian Sea and northern-central India, near normal all- India rainfall, but excessive heavy rain, causing disastrous flooding in the Northern Indian Himalaya Foothills (NIHF) regions, accompanied by persistent drought conditions in central and southern India. Using NASA Unified-physics Weather Research Forecast (NUWRF) model with fully interactive aerosol physics and dynamics, we carried out three sets of 7-day ensemble model forecast experiments: 1) control with no aerosol, 2) aerosol radiative effect only and 3) aerosol radiative and aerosol-cloud-microphysics effects, to study the impacts of aerosol monsoon interactions on monsoon variability over the NIHF during the summer of 2008. Results show that aerosol-radiation interaction (ARI), i.e., dust aerosol transport, and dynamical feedback processes induced by aerosol-radiative heating, plays a key role in altering the large scale monsoon circulation system, reflected by an increased north-south tropospheric temperature gradient, a northward shift of heavy monsoon rainfall, advancing the monsoon onset by 1-5 days over the HF, consistent with the EHP hypothesis (Lau et al. 2006). Additionally, we found that dust aerosols, via the semi-direct effect, increase atmospheric stability, and cause the dissipation of a developing monsoon onset cyclone over northeastern India northern Bay of Bengal. Eventually, in a matter of several days, ARI transforms the developing monsoon cyclone into mesoscale convective cells along the HF slopes. Aerosol-Cloud-microphysics Interaction (ACI) further enhances the ARI effect in invigorating the deep convection cells and speeding up the transformation processes. Results indicate that even in short-term (up to weekly) numerical forecasting of monsoon circulation and rainfall, effects of aerosol-monsoon interaction can be substantial and cannot be ignored.

Immunoglobulin Tau Heavy Chain (IgT) in Flounder, Paralichthys olivaceus: Molecular Cloning, Characterization, and Expression Analyses

PubMed Central

Du, Yang; Tang, Xiaoqian; Zhan, Wenbin; Xing, Jing; Sheng, Xiuzhen

2016-01-01

Immunoglobulin tau (IgT) is a new teleost immunoglobulin isotype, and its potential function in adaptive immunity is not very clear. In the present study, the membrane-bound and secreted IgT (mIgT and sIgT) heavy chain genes were cloned for the first time and characterized in flounder (Paralichthys olivaceus), and found the nucleic acid sequence were exactly same in the Cτ1–Cτ4 constant domains of mIgT and sIgT, but different in variable regions and the C-terminus. The amino acid sequence of mIgT shared higher similarity with Bovichtus diacanthus (51.2%) and Dicentrarchus labrax (45.0%). Amino acid of flounder IgT, IgM, and IgD heavy chain was compared and the highest similarity was found between IgT Cτ1 and IgM Cμ1 (38%). In healthy flounder, the transcript levels of IgT mRNA were the highest in gill, spleen, and liver, and higher in peripheral blood leucocytes, skin, and hindgut. After infection and vaccination with Edwardsiella tarda via intraperitoneal injection and immersion, the qRT-PCR analysis demonstrated that the IgT mRNA level was significantly upregulated in all tested tissues, with similar dynamic tendency that increased firstly and then decreased, and higher in gill, skin, hindgut, liver, and stomach in immersion than in the injection group, but no significant difference existed in spleen and head kidney between immersion and injection groups. These results revealed that IgT responses could be simultaneously induced in both mucosal and systemic tissues after infection/vaccination via injection and immersion route, but IgT might play a more important role in mucosal immunity than in systemic immunity. PMID:27649168

Bose-Einstein correlations in pp and PbPb collisions with ALICE at the LHC

ScienceCinema

Kisiel, Adam

2018-05-14

We report on the results of identical pion femtoscopy at the LHC. The Bose-Einstein correlation analysis was performed on the large-statistics ALICE p+p at sqrt{s}= 0.9 TeV and 7 TeV datasets collected during 2010 LHC running and the first Pb+Pb dataset at sqrt{s_NN}= 2.76 TeV. Detailed pion femtoscopy studies in heavy-ion collisions have shown that emission region sizes ("HBT radii") decrease with increasing pair momentum, which is understood as a manifestation of the collective behavior of matter. 3D radii were also found to universally scale with event multiplicity. In p+p collisions at 7 TeV one measures multiplicities which are comparable with those registered in peripheral AuAu and CuCu collisions at RHIC, so direct comparisons and tests of scaling laws are now possible. We show the results of double-differential 3D pion HBT analysis, as a function of multiplicity and pair momentum. The results for two collision energies are compared to results obtained in the heavy-ion collisions at similar multiplicity and p+p collisions at lower energy. We identify the relevant scaling variables for the femtoscopic radii and discuss the similarities and differences to results from heavy-ions. The observed trends give insight into the soft particle production mechanism in p+p collisions and suggest that a self-interacting collective system may be created in sufficiently high multiplicity events. First results for the central Pb+Pb collisions are also shown. A significant increase of the reaction zone volume and lifetime in comparison to RHIC is observed. Signatures of collective hydrodynamics-like behavior of the system are also apparent, and are compared to model predictions.

Application of manures to mitigate the harmful effects of electrokinetic remediation of heavy metals on soil microbial properties in polluted soils.

PubMed

Tahmasbian, Iman; Safari Sinegani, Ali Akbar; Nguyen, Thi Thu Nhan; Che, Rongxiao; Phan, Thuc D; Hosseini Bai, Shahla

2017-12-01

Ethylenediaminetetraacetic acid (EDTA) used with electrokinetic (EK) to remediate heavy metal-polluted soils is a toxic chelate for soil microorganisms. Therefore, this study aimed to evaluate the effects of alternative organic chelates to EDTA on improving the microbial properties of a heavy metal-polluted soil subjected to EK. Cow manure extract (CME), poultry manure extract (PME) and EDTA were applied to a lead (Pb) and zinc (Zn)-polluted calcareous soil which were subjected to two electric intensities (1.1 and 3.3 v/cm). Soil carbon pools, microbial activity, microbial abundance (e.g., fungal, actinomycetes and bacterial abundances) and diethylenetriaminepentaacetic acid (DTPA)-extractable Pb and Zn (available forms) were assessed in both cathodic and anodic soils. Applying the EK to soil decreased all the microbial variables in the cathodic and anodic soils in the absence or presence of chelates. Both CME and PME applied with two electric intensities decreased the negative effect of EK on soil microbial variables. The lowest values of soil microbial variables were observed when EK was combined with EDTA. The following order was observed in values of soil microbial variables after treating with EK and chelates: EK + CME or EK + PME > EK > EK + EDTA. The CME and PME could increase the concentrations of available Pb and Zn, although the increase was less than that of EDTA. Overall, despite increasing soil available Pb and Zn, the combination of EK with manures (CME or PME) mitigated the negative effects of using EK on soil microbial properties. This study suggested that the synthetic chelates such as EDTA could be replaced with manures to alleviate the environmental risks of EK application.

Excessive amounts of mu heavy chain block B-cell development.

PubMed

Zhu, Lingqiao; Chang, Cheong-Hee; Dunnick, Wesley

2011-09-01

Antigen-independent B-cell development occurs in several stages that depend on the expression of Ig heavy and light chain. We identified a line of mice that lacked mature B cells in the spleen. This mouse line carried approximately 11 copies of a transgene of the murine heavy chain constant region locus, and B-lineage cells expressed excessive amounts of the intracellular μ heavy chain. B-cell development failed in the bone marrow at the pro/pre B-cell transition, and examination of other lines with various copy numbers of the same transgene suggested that deficiencies in B-cell development increased with increased transgene copy number. Expression of a transgenic (Tg) light chain along with the Tg μ heavy chain led to minimal rescue of B-cell development in the bone marrow and B cells in the spleen. There are several potential mechanisms for the death of pro/pre B cells as a consequence of excess heavy chain expression.

Heavy metals in surface lake sediments on the Kola Penninsula as an index of air quality

DOE Office of Scientific and Technical Information (OSTI.GOV)

Dauvalter, V.

1996-12-31

The investigations of heavy metal (Ni, Cu, Co, Zn, Pb, Cd, Hg) distribution in sediments of more than 100 lakes were carried out between 1989 and 1994. The study lakes are situated at different distances from two main heavy metal pollution sources of the Kola Peninsula-smelters of the Pechenganickel and Severonickel Companies. To assess the pollution extent of investigated lakes, values of factor and degree of contamination were calculated according to the method suggested by Hakanson (1980). Heavy metal contamination factor (C{sub f}) for each heavy metal was calculated as the quotient of concentration from the uppermost (0-1 cm) sedimentmore » to the mean preindustrial background value (concentrations from 20-30 cm sediment layers) for the investigated region. Degree of contamination (C{sub d}) was defined as the sum of all contamination factors for studied heavy metals. To quantitatively express the potential ecological risk of given contaminants created for ecosystems, risk factor (Er) for each heavy metal has been calculated. Er takes into account the toxicity of a heavy metal and bioproduction index (BPI) of a lake. Risk index (RI) was determined as the sum of all ecological risk factor for studied heavy metals.« less

Groundwater chemistry and human health risk assessment in the mining region of East Singhbhum, Jharkhand, India.

PubMed

Singh, Umesh Kumar; Ramanathan, A L; Subramanian, V

2018-08-01

Groundwater chemistry of mining region of East Singhbhum district having complex contaminant sources were investigated based on heavy metals loads and other hydrochemical constituents. This study aimed to identify the degree of heavy metals exposure and their potential health risk to local population. The results of hydrochemical analysis showed that Na + , K + , and Ca 2+ ions are the dominant cations in the groundwater, while HCO 3 - , F - and Cl - ions dominate the anionic part of the groundwater. The weathering process was considered the dominant factor to determine the major ionic composition in the study area. Compositional analysis for heavy metal has identified that groundwater of the study area is contaminated by Cd, Pb and Cr elements. Source of these metals have been identified as an anthropogenic inputs from mining activities and mineral processing units. Health risk analysis of individual heavy metal for chronic daily intake (CDI) and hazard quotient (HQ) was found in the order of Cr > As > Cd > Pb which is indicating high health risk for the population. In addition, Hazard Index (HI) analysis for heavy metals was found significantly high (>1) which is considered as a threat for human population because they have the tendency to accumulate in the body and cause variety of diseases like kidney problem, dysfunction of liver and renal cortex as well as cancer. Copyright © 2018 Elsevier Ltd. All rights reserved.

A pair of new moisture-dynamic diagnostic parameters for heavy rain location

NASA Astrophysics Data System (ADS)

Yuan, Kai; Zhu, Zhiwei; Li, Ming

2018-06-01

In this study, the regional persistent heavy rain process occurred in the middle and lower reaches of the Yangtze River valley from 30 June 2016 to 7 July 2016 is analyzed. We find that the pure dynamic parameters [e.g., vorticity ( V) and divergence ( D)] and two-dimensional moisture-dynamic parameters [e.g., moist vorticity ( MV), moist divergence ( MD)] have difficulty in capturing the rainfall location during such a critical process. Given the poor performance of these traditional parameters, a pair of new parameters [namely, one-dimensional moist vorticity ( ODMV) and one-dimensional moist divergence ( ODMD)] based on low-level jet is proposed for diagnosing heavy rain location. The results show that (1) ODMV and ODMD have better relations with rain belt in terms of spatial distribution. Precipitation occurs in positive (negative) region of ODMV ( ODMD), and heavy rainfall accurately locates in the positive (negative) center of ODMV ( ODMD); (2) ODMV and ODMD also have good correlation with the precipitation in terms of temporal variation (significant at the 99% confidence level). When ODMV ( ODMD) is in strong positive (negative) phase, precipitation is large, and vice versa; (3) the threat score of ODMV and ODMD for the areal-mean rainfall is improved by 119% and 16%, respectively, compared to V/ D and MV/ MD. It is anticipated that the proposed new parameters would facilitate the skills of diagnosing and forecasting the heavy rainfall.

Warm season heavy rainfall events over the Huaihe River Valley and their linkage with wintertime thermal condition of the tropical oceans

NASA Astrophysics Data System (ADS)

Li, Laifang; Li, Wenhong; Tang, Qiuhong; Zhang, Pengfei; Liu, Yimin

2016-01-01

Warm season heavy rainfall events over the Huaihe River Valley (HRV) of China are amongst the top causes of agriculture and economic loss in this region. Thus, there is a pressing need for accurate seasonal prediction of HRV heavy rainfall events. This study improves the seasonal prediction of HRV heavy rainfall by implementing a novel rainfall framework, which overcomes the limitation of traditional probability models and advances the statistical inference on HRV heavy rainfall events. The framework is built on a three-cluster Normal mixture model, whose distribution parameters are sampled using Bayesian inference and Markov Chain Monte Carlo algorithm. The three rainfall clusters reflect probability behaviors of light, moderate, and heavy rainfall, respectively. Our analysis indicates that heavy rainfall events make the largest contribution to the total amount of seasonal precipitation. Furthermore, the interannual variation of summer precipitation is attributable to the variation of heavy rainfall frequency over the HRV. The heavy rainfall frequency, in turn, is influenced by sea surface temperature anomalies (SSTAs) over the north Indian Ocean, equatorial western Pacific, and the tropical Atlantic. The tropical SSTAs modulate the HRV heavy rainfall events by influencing atmospheric circulation favorable for the onset and maintenance of heavy rainfall events. Occurring 5 months prior to the summer season, these tropical SSTAs provide potential sources of prediction skill for heavy rainfall events over the HRV. Using these preceding SSTA signals, we show that the support vector machine algorithm can predict HRV heavy rainfall satisfactorily. The improved prediction skill has important implication for the nation's disaster early warning system.