Fish assemblage dynamics in a Neotropical floodplain relative to aquatic macrophytes and the homogenizing effect of a flood pulse

USGS Publications Warehouse

Gomes, L.C.; Bulla, C. K.; Agostinho, A. A.; Vasconcelos, L. P.; Miranda, Leandro E.

2012-01-01

The presence of aquatic macrophytes is a key factor in the selection of habitats by fish in floodplain lakes because these plants enhance the physical and biological complexities of aquatic habitats. The seasonal flood pulse may influence this interaction, but there is no information in the literature about the effects that flood events may have on macrophytes assemblages and its associated effects on fish assemblages. Thus, this article aimed to investigate whether species richness, evenness and similarities in fish assemblage composition differed between littoral areas vegetated with macrophytes and unvegetated areas, before and after a flood. We sampled three lakes in the floodplain of the upper Paraná River basin. Sampling was conducted before (December 2004 and January 2005) and after (early March, late March and May 2005) a flood event. Overall, species richness and evenness were higher in macrophytes-covered areas. Before the flood, the composition of fish assemblages was distinct when comparing vegetated and unvegetated areas. After the flood, the similarity in fish assemblage composition was higher, indicating a homogenization effect of floods for fish inhabiting littoral areas of floodplain lakes. After the flood, opportunistic species dominated the fish assemblages in aquatic macrophytes, apparently restructuring assemblages in the littoral, restarting a succession process. Thus, the observed homogenization effect of the flood could minimize biological interactions and could induce fish assemblages to begin a new process of structurization.

180,000 years of climate change in Europe: avifaunal responses and vegetation implications.

PubMed

Holm, Sandra Ravnsbæk; Svenning, Jens-Christian

2014-01-01

Providing an underutilized source of information for paleoenvironmental reconstructions, birds are rarely used to infer paleoenvironments despite their well-known ecology and extensive Quaternary fossil record. Here, we use the avian fossil record to investigate how Western Palearctic bird assemblages and species ranges have changed across the latter part of the Pleistocene, with focus on the links to climate and the implications for vegetation structure. As a key issue we address the full-glacial presence of trees in Europe north of the Mediterranean region, a widely debated issue with evidence for and against emerging from several research fields and data sources. We compiled and analyzed a database of bird fossil occurrences from archaeological sites throughout the Western Palearctic and spanning the Saalian-Eemian-Weichselian stages, i.e. 190,000-10,000 years BP. In general, cold and dry-adapted species dominated these late Middle Pleistocene and Late Pleistocene fossil assemblages, with clear shifts of northern species southwards during glacials, as well as northwards and westwards shifts of open-vegetation species from the south and east, respectively and downwards shifts of alpine species. A direct link to climate was clear in Northwestern Europe. However, in general, bird assemblages more strongly reflected vegetation changes, underscoring their usefulness for inferring the vegetation structure of past landscapes. Forest-adapted birds were found in continuous high proportions throughout the study period, providing support for the presence of trees north of the Alps, even during full-glacial stages. Furthermore, the results suggest forest-dominated but partially open Eemian landscapes in the Western Palearctic, including the Northwestern European subregion.

Spatial and Temporal Distribution of Non-Biting Midge Larvae Assemblages in Streams in a Mountainous Region in Southern Brazil

PubMed Central

Floss, Elzira Cecília Serafini; Secretti, Elisangela; Kotzian, Carla Bender; Spies, Marcia Regina; Pires, Mateus Marques

2013-01-01

The spatial and temporal structure of non-biting midge (Diptera: Chironomidae) larvae assemblages and some environmental factors that affect their distribution were analyzed in a montane river and its tributaries in a temperate climate region of southernmost Brazil. In total, 69 taxa were recorded after four seasonal samplings (winter, spring, summer, and autumn). The dominant taxa were Rheotanytarsus sp. 1, Rheotanytarsus sp. 2, Cricotopus sp. 2, and Polypedilum (Polypedilum) sp., although dominance varied among the four sampling sites. The variations in dominance, abundance, and richness among the different sites were affected by environmental characteristics, such as the presence of marginal vegetation and a heterogeneous substratum, and also by human activities. Strictly environmental factors, such as altitude, and factors related to annual weather patterns, such as mean temperature and precipitation, influenced the spatial and temporal distribution of certain taxa and the structure of faunal assemblages. The influence of the riparian vegetation and riverbed heterogeneity on the composition, richness, and abundance of the chironomid larvae assemblages indicates that human activities, such as deforestation and the construction of dams, constitute a serious threat to the conservation of these insects and to the fauna that depends on them for food. PMID:24784953

Effect of oil palm on the Plecoptera and Trichoptera (Insecta) assemblages in streams of eastern Amazon.

PubMed

de Paiva, Carina Kaory Sasahara; de Faria, Ana Paula Justino; Calvão, Lenize Batista; Juen, Leandro

2017-08-01

The production of oil palm is expected to increase in the Amazon region. However, expansion of oil palm plantation leads to significant changes in the physical structure of aquatic ecosystems, mainly through the reduction of riparian vegetation that is essential for aquatic biodiversity. Here, we evaluated the effects of oil palm on the physical habitat structure of Amazonian stream environments and assemblages of Plecoptera and Trichoptera (PT), ​both found in these streams. We compared streams sampled in oil palm plantations (n = 13) with natural forest areas ("reference" streams, n = 8), located in the eastern Amazon, Brazil. Our results showed that oil palm streams were more likely to be in close proximity to roads, had higher pH values, and higher amounts of fine substrate deposited in the channel than reference streams. Further, these environmental changes had important effects on the aquatic invertebrate assemblages, reducing the abundance and richness of PT. Nevertheless, the genera composition of the assemblages did not differ between reference and oil palm (PERMANOVA, pseudo-F (1,19)  = 1.891; p = 0.111). We conclude that oil palm production has clear negative impacts on aquatic environments and PT assemblages in Amazonian streams. We recommend that oil palm producers invest more in planning of road networks to avoid the construction of roads near to the riparian vegetation. This planning can minimize impacts of oil palm production on aquatic systems in the Amazon.

Effects of management legacies on stream fish and aquatic benthic macroinvertebrate assemblages

USGS Publications Warehouse

Quist, Michael C.; Schultz, Randall D.

2014-01-01

Fish and benthic macroinvertebrate assemblages often provide insight on ecological conditions for guiding management actions. Unfortunately, land use and management legacies can constrain the structure of biotic communities such that they fail to reflect habitat quality. The purpose of this study was to describe patterns in fish and benthic macroinvertebrate assemblage structure, and evaluate relationships between biota and habitat characteristics in the Chariton River system of south-central Iowa, a system likely influenced by various potential management legacies (e.g., dams, chemical removal of fishes). We sampled fishes, benthic macroinvertebrates, and physical habitat from a total of 38 stream reaches in the Chariton River watershed during 2002–2005. Fish and benthic macroinvertebrate assemblages were dominated by generalist species tolerant of poor habitat quality; assemblages failed to show any apparent patterns with regard to stream size or longitudinal location within the watershed. Metrics used to summarize fish assemblages and populations [e.g., presence–absence, relative abundance, Index of Biotic Integrity for fish (IBIF)] were not related to habitat characteristics, except that catch rates of piscivores were positively related to the depth and the amount of large wood. In contrast, family richness of benthic macroinvertebrates, richness of Ephemeroptera, Trichoptera, and Plecoptera taxa, and IBI values for benthic macroinvertebrates (IBIBM) were positively correlated with the amount of overhanging vegetation and inversely related to the percentage of fine substrate. A long history of habitat alteration by row-crop agriculture and management legacies associated with reservoir construction has likely resulted in a fish assemblage dominated by tolerant species. Intolerant and sensitive fish species have not recolonized streams due to downstream movement barriers (i.e., dams). In contrast, aquatic insect assemblages reflected aquatic habitat, particularly the amount of overhanging vegetation and fine sediment. This research illustrates the importance of using multiple taxa for biological assessments and the need to consider management legacies when investigating responses to management and conservation actions.

Effects of Management Legacies on Stream Fish and Aquatic Benthic Macroinvertebrate Assemblages

NASA Astrophysics Data System (ADS)

Quist, Michael C.; Schultz, Randall D.

2014-09-01

Fish and benthic macroinvertebrate assemblages often provide insight on ecological conditions for guiding management actions. Unfortunately, land use and management legacies can constrain the structure of biotic communities such that they fail to reflect habitat quality. The purpose of this study was to describe patterns in fish and benthic macroinvertebrate assemblage structure, and evaluate relationships between biota and habitat characteristics in the Chariton River system of south-central Iowa, a system likely influenced by various potential management legacies (e.g., dams, chemical removal of fishes). We sampled fishes, benthic macroinvertebrates, and physical habitat from a total of 38 stream reaches in the Chariton River watershed during 2002-2005. Fish and benthic macroinvertebrate assemblages were dominated by generalist species tolerant of poor habitat quality; assemblages failed to show any apparent patterns with regard to stream size or longitudinal location within the watershed. Metrics used to summarize fish assemblages and populations [e.g., presence-absence, relative abundance, Index of Biotic Integrity for fish (IBIF)] were not related to habitat characteristics, except that catch rates of piscivores were positively related to the depth and the amount of large wood. In contrast, family richness of benthic macroinvertebrates, richness of Ephemeroptera, Trichoptera, and Plecoptera taxa, and IBI values for benthic macroinvertebrates (IBIBM) were positively correlated with the amount of overhanging vegetation and inversely related to the percentage of fine substrate. A long history of habitat alteration by row-crop agriculture and management legacies associated with reservoir construction has likely resulted in a fish assemblage dominated by tolerant species. Intolerant and sensitive fish species have not recolonized streams due to downstream movement barriers (i.e., dams). In contrast, aquatic insect assemblages reflected aquatic habitat, particularly the amount of overhanging vegetation and fine sediment. This research illustrates the importance of using multiple taxa for biological assessments and the need to consider management legacies when investigating responses to management and conservation actions.

Effects of management legacies on stream fish and aquatic benthic macroinvertebrate assemblages.

PubMed

Quist, Michael C; Schultz, Randall D

2014-09-01

Fish and benthic macroinvertebrate assemblages often provide insight on ecological conditions for guiding management actions. Unfortunately, land use and management legacies can constrain the structure of biotic communities such that they fail to reflect habitat quality. The purpose of this study was to describe patterns in fish and benthic macroinvertebrate assemblage structure, and evaluate relationships between biota and habitat characteristics in the Chariton River system of south-central Iowa, a system likely influenced by various potential management legacies (e.g., dams, chemical removal of fishes). We sampled fishes, benthic macroinvertebrates, and physical habitat from a total of 38 stream reaches in the Chariton River watershed during 2002-2005. Fish and benthic macroinvertebrate assemblages were dominated by generalist species tolerant of poor habitat quality; assemblages failed to show any apparent patterns with regard to stream size or longitudinal location within the watershed. Metrics used to summarize fish assemblages and populations [e.g., presence-absence, relative abundance, Index of Biotic Integrity for fish (IBIF)] were not related to habitat characteristics, except that catch rates of piscivores were positively related to the depth and the amount of large wood. In contrast, family richness of benthic macroinvertebrates, richness of Ephemeroptera, Trichoptera, and Plecoptera taxa, and IBI values for benthic macroinvertebrates (IBIBM) were positively correlated with the amount of overhanging vegetation and inversely related to the percentage of fine substrate. A long history of habitat alteration by row-crop agriculture and management legacies associated with reservoir construction has likely resulted in a fish assemblage dominated by tolerant species. Intolerant and sensitive fish species have not recolonized streams due to downstream movement barriers (i.e., dams). In contrast, aquatic insect assemblages reflected aquatic habitat, particularly the amount of overhanging vegetation and fine sediment. This research illustrates the importance of using multiple taxa for biological assessments and the need to consider management legacies when investigating responses to management and conservation actions.

Measuring restoration in intertidal macrophyte assemblages following sewage treatment upgrade.

PubMed

Díez, I; Santolaria, A; Muguerza, N; Gorostiaga, J M

2013-03-01

Understanding the effectiveness of pollution mitigation actions in terms of biological recovery is essential if the environmental protection goals of management policies are to be achieved. Few studies, however, have evaluated the restoration of seaweed assemblages following pollution abatement. This study aimed to investigate the response of macroalgal vegetation to the upgrade of a wastewater treatment plant using a "Beyond BACI" experimental design. Temporal differences in vegetation structure between the outfall and two control locations over a 10-year period were assessed. Improvement in sewage treatment was found to lead to increases in diversity, cover of morphologically complex algae and spatial heterogeneity. The multivariate composition of assemblages at the outfall location became more similar to that at the controls; however, their complete recovery may depend on factors other than pollution removal. Our findings also suggest that the extent of restoration and the time required to detect it are largely predetermined by the response variables we choose to assess recovery. Copyright © 2012 Elsevier Ltd. All rights reserved.

Disproportionate effects of non-colonial small herbivores on structure and diversity of grassland dominated by large herbivores

USDA-ARS?s Scientific Manuscript database

The response of semiarid grasslands to small, non-colonial herbivores has received little attention, focusing primarily on the effects of granivore assemblages on annual plant communities. We studied the long-term effects of small and large herbivores on vegetation structure and species diversity of...

Instability of copronecrophagous beetle assemblages (Coleoptera: Scarabaeinae) in a mountainous tropical landscape of Mexico.

PubMed

Halffter, Gonzalo; Pineda, Eduardo; Arellano, Lucrecia; Escobar, Federico

2007-12-01

We analyzed changes over time in species composition and functional guild structure (temporal beta diversity) for natural assemblages and those modified by humans in a fragmented, tropical mountain landscape. The assemblages belong to cloud forests (the original vegetation type), secondary forests, traditional shaded coffee plantations, commercial shaded coffee plantations, and a cattle pasture. Copronecrophagous beetles, subfamily Scarabaeinae (Insecta: Coleoptera: Scarabaeidae), were used as the indicator group. This group has been used in previous studies and other tropical forests and has been found to be a good indicator of the effects of anthropogenic change. For each assemblage, we compared samples that were collected several years apart. Changes were found in species composition, order of abundance, and in the proportion that a given species is present in the different functional groups. The changes that occurred between samplings affected the less abundant species in the cloud forest and in the pasture. In the other vegetation types, both abundant and less abundant species were affected. Their order of abundance and proportion in the different guilds also changed. This study shows that, although landscape richness remains relatively constant, richness at the local level (alpha diversity) changes notably even over short lapses of time. This could be a characteristic of landscapes with intermediate degrees of disturbance (such as those that have been partially modified for human use), where assemblage composition is very fluid.

Associations of breeding birds with fire-influenced and riparian-upland gradients in a longleaf pine ecosystem

USGS Publications Warehouse

Allen, J.C.; Krieger, S.M.; Walters, J.R.; Collazo, J.A.

2006-01-01

We determined the effects of fire history and a riparian-upland gradient on the breeding bird community at Fort Bragg Military Installation in North Carolina, one of the largest remnant areas of the endangered longleaf pine (Pinus palustris) ecosystem. Study sites were classified into two treatments: fire-intense (areas experiencing growing-season burns) and fire-suppressed (areas lacking fires). Within each treatment, bird and vegetation data were recorded at point-count stations positioned at three distances from streamhead pocosins to characterize the riparian-upland habitat gradient: 0, 75, and ≥150 m. Total bird abundance and species richness varied significantly along the riparian-upland gradient, with pocosins contributing greatly to avian biodiversity. Our data revealed strong effects of fire history and riparian-upland gradient on bird species, which we described in terms of breeding-bird assemblages. Members of the open longleaf assemblage (e.g., Red- cockaded Woodpecker [Picoides borealis], Bachman's Sparrow [Aimophila aestivalis]) were most common in fire-intense areas and at upland locations. Members of the fire-suppressed assemblage (e.g., Wood Thrush [Hylocichla mustelina], Ovenbird [Seiurus aurocapilla]) were confined to pocosins in fire-intense areas, but became more abundant in fire-suppressed areas. Members of the pocosin assemblage (e.g., Eastern Towhee [Pipilo erythropthalamus], Common Yellowthroat [Geothlypis trichas]) were largely confined to pocosins and, in some cases, were most abundant in fire-intense pocosins. Fire suppression increased structural diversity of vegetation and promoted one breeding-bird assemblage (fire-suppressed), but at the expense of two others (open longleaf, pocosin). Continued management of Fort Bragg to promote longleaf pine restoration is essential for supporting conservation of the open-longleaf bird assemblage; in addition, it will benefit the pocosin assemblage.

Compliance of secondary production and eco-exergy as indicators of benthic macroinvertebrates assemblages' response to canopy cover conditions in Neotropical headwater streams.

PubMed

Linares, Marden Seabra; Callisto, Marcos; Marques, João Carlos

2018-02-01

Riparian vegetation cover influences benthic assemblages structure and functioning in headwater streams, as it regulates light availability and autochthonous primary production in these ecosystems.Secondary production, diversity, and exergy-based indicators were applied in capturing how riparian cover influences the structure and functioning of benthic macroinvertebrate assemblages in tropical headwater streams. Four hypotheses were tested: (1) open canopy will determine the occurrence of higher diversity in benthic macroinvertebrate assemblages; (2) streams with open canopy will exhibit more complex benthic macroinvertebrate communities (in terms of information embedded in the organisms' biomass); (3) in streams with open canopy benthic macroinvertebrate assemblages will be more efficient in using the available resources to build structure, which will be reflected by higher eco-exergy values; (4) benthic assemblages in streams with open canopy will exhibit more secondary productivity. We selected eight non-impacted headwater streams, four shaded and four with open canopy, all located in the Neotropical savannah (Cerrado) of southeastern Brazil. Open canopy streams consistently exhibited significantly higher eco-exergy and instant secondary production values, exemplifying that these streams may support more complex and productive benthic macroinvertebrate assemblages. Nevertheless, diversity indices and specific eco-exergy were not significantly different in shaded and open canopy streams. Since all the studied streams were selected for being considered as non-impacted, this suggests that the potential represented by more available food resources was not used to build a more complex dissipative structure. These results illustrate the role and importance of the canopy cover characteristics on the structure and functioning of benthic macroinvertebrate assemblages in tropical headwater streams, while autochthonous production appears to play a crucial role as food source for benthic macroinvertebrates. This study also highlights the possible application of thermodynamic based indicators as tools to guide environmental managers in developing and implementing policies in the neotropical savannah. Copyright © 2017 Elsevier B.V. All rights reserved.

Equine Grazing in Managed Subalpine Wetlands: Effects on Arthropods and Plant Structure as a Function of Habitat

NASA Astrophysics Data System (ADS)

Holmquist, Jeffrey G.; Schmidt-Gengenbach, Jutta; Haultain, Sylvia A.

2013-12-01

Grazing management necessarily emphasizes the most spatially extensive vegetation assemblages, but landscapes are mosaics, often with more mesic vegetation types embedded within a matrix of drier vegetation. Our primary objective was to contrast effects of equine grazing on both subalpine vegetation structure and associated arthropods in a drier reed grass ( Calamagrostis muiriana) dominated habitat versus a wetter, more productive sedge habitat ( Carex utriculata). A second objective was to compare reed grass and sedge as habitats for fauna, irrespective of grazing. All work was done in Sequoia National Park (CA, USA), where detailed, long-term records of stock management were available. We sampled paired grazed and control wet meadows that contained both habitats. There were moderate negative effects of grazing on vegetation, and effects were greater in sedge than in reed grass. Conversely, negative grazing effects on arthropods, albeit limited, were greater in the drier reed grass, possibly due to microhabitat differences. The differing effects on plants and animals as a function of habitat emphasize the importance of considering both flora and fauna, as well as multiple habitat types, when making management decisions. Sedge supported twice the overall arthropod abundance of reed grass as well as greater diversity; hemipteran and dipteran taxa were particularly abundant in sedge. Given the greater grazing effects on sedge vegetation, greater habitat provision for terrestrial arthropods, and value as aquatic arthropod habitat, the wetter sedge assemblage is worthy of additional consideration by managers when planning for grazing and other aspects of land usage.

Patterns and predictors of β-diversity in the fragmented Brazilian Atlantic forest: a multiscale analysis of forest specialist and generalist birds.

PubMed

Morante-Filho, José Carlos; Arroyo-Rodríguez, Víctor; Faria, Deborah

2016-01-01

Biodiversity maintenance in human-altered landscapes (HALs) depends on the species turnover among localities, but the patterns and determinants of β-diversity in HALs are poorly known. In fact, declines, increases and neutral shifts in β-diversity have all been documented, depending on the landscape, ecological group and spatial scale of analysis. We shed some light on this controversy by assessing the patterns and predictors of bird β-diversity across multiple spatial scales considering forest specialist and habitat generalist bird assemblages. We surveyed birds from 144 point counts in 36 different forest sites across two landscapes with different amount of forest cover in the Brazilian Atlantic forest. We analysed β-diversity among points, among sites and between landscapes with multiplicative diversity partitioning of Hill numbers. We tested whether β-diversity among points was related to within-site variations in vegetation structure, and whether β-diversity among sites was related to site location and/or to differences among sites in vegetation structure and landscape composition (i.e. per cent forest and pasture cover surrounding each site). β-diversity between landscapes was lower than among sites and among points in both bird assemblages. In forest specialist birds, the landscape with less forest cover showed the highest β-diversity among sites (bird differentiation among sites), but generalist birds showed the opposite pattern. At the local scale, however, the less forested landscape showed the lowest β-diversity among points (bird homogenization within sites), independently of the bird assemblage. β-diversity among points was weakly related to vegetation structure, but higher β-diversity values were recorded among sites that were more isolated from each other, and among sites with higher differences in landscape composition, particularly in the less forested landscape. Our findings indicate that patterns of bird β-diversity vary across scales and are strongly related to landscape composition. Bird assemblages are shaped by both environmental filtering and dispersal limitation, particularly in less forested landscapes. Conservation and management strategies should therefore prevent deforestation in this biodiversity hotspot. © 2015 The Authors. Journal of Animal Ecology © 2015 British Ecological Society.

Impacts of exotic mangroves and mangrove control on tide pool fish assemblages

Treesearch

Richard A. MacKenzie; Cailtin L. Kryss

2013-01-01

Fish were sampled from tide pools in Hawaii to determine how exotic mangroves Rhizophora mangle and the use of herbicides to chemically eradicate them are impacting tide pool fish assemblages. Ecological parameters were compared among mangrove-invaded, native vegetated, and non-vegetated tide pools before and after mangroves had been chemically...

Identical Assemblage of Giardia duodenalis in Humans, Animals and Vegetables in an Urban Area in Southern Brazil Indicates a Relationship among Them

PubMed Central

Colli, Cristiane Maria; Bezagio, Renata Coltro; Nishi, Letícia; Bignotto, Thaís Souto; Ferreira, Érika Cristina; Falavigna-Guilherme, Ana Lúcia; Gomes, Mônica Lúcia

2015-01-01

Background Giardia duodenalis infects humans and other mammals by ingestion of cysts in contaminated water or food, or directly in environments with poor hygiene. Eight assemblages, designated A–H, are described for this species. Methodology/Principal Findings We investigated by microscopy or by direct immunofluorescence technique the occurrence of G. duodenalis in 380 humans, 34 animals, 44 samples of water and 11 of vegetables. G. duodenalis cysts present in samples were genotyped through PCR-RFLP of β giardin and glutamate dehydrogenase (gdh) genes and sequencing of gdh. The gdh gene was amplified in 76.5% (26/34) of the human faeces samples with positive microscopy and in 2.9% (1/34) of negative samples. In 70.4% (19/27) of the positive samples were found BIV assemblage. In two samples from dogs with positive microscopy and one negative sample, assemblages BIV, C, and D were found. Cysts of Giardia were not detected in water samples, but three samples used for vegetable irrigation showed total coliforms above the allowed limit, and Escherichia coli was observed in one sample. G. duodenalis BIV was detected in two samples of Lactuca sativa irrigated with this sample of water. BIV was a common genotype, with 100% similarity, between different sources or hosts (humans, animals and vegetables), and the one most often found in humans. Conclusions/Significance This is the first study in Brazil that reports the connection among humans, dogs and vegetables in the transmission dynamics of G. duodenalis in the same geographic area finding identical assemblage. BIV assemblage was the most frequently observed among these different links in the epidemiological chain. PMID:25761119

Recovery of endemic dragonflies after removal of invasive alien trees.

PubMed

Samways, Michael J; Sharratt, Norma J

2010-02-01

Because dragonflies are very sensitive to alien trees, we assessed their response to large-scale restoration of riparian corridors. We compared three types of disturbance regime--alien invaded, cleared of alien vegetation, and natural vegetation (control)--and recorded data on 22 environmental variables. The most significant variables in determining dragonfly assemblages were percentage of bank cover and tree canopy cover, which indicates the importance of vegetation architecture for these dragonflies. This finding suggests that it is important to restore appropriate marginal vegetation and sunlight conditions. Recovery of dragonfly assemblages after the clearing of alien trees was substantial. Species richness and abundance at restored sites matched those at control sites. Dragonfly assemblage patterns reflected vegetation succession. Thus, initially eurytopic, widespread species were the main beneficiaries of the removal of alien trees, and stenotopic, endemic species appeared after indigenous vegetation recovered over time. Important indicator species were the two national endemics (Allocnemis leucosticta and Pseudagrion furcigerum), which, along with vegetation type, can be used to monitor return of overall integrity of riparian ecology and to make management decisions. Endemic species as a whole responded positively to restoration, which suggests that indigenous vegetation recovery has major benefits for irreplaceable and widespread generalist species.

Spatiotemporal diversity, structure and trophic guilds of insect assemblages in a semi-arid Sabkha ecosystem

PubMed Central

Menasria, Taha; Neffar, Souad; Chafaa, Smail; Bradai, Lyès; Chaibi, Rachid; Mekahlia, Mohamed Nacer; Bendjoudi, Djamel; Si Bachir, Abdelkrim

2015-01-01

The current study highlights some knowledge on the diversity and structure of insect communities and trophic groups living in Sabkha Djendli (semi-arid area of Northeastern Algeria). The entomofauna was monthly sampled from March to November 2006 using pitfall traps at eight sites located at the vicinity of the Sabkha. Structural and diversity parameters (species richness, Shannon index, evenness) were measured for both insect orders and trophic guilds. The canonical correspondence analysis (CCA) was applied to determine how vegetation parameters (species richness and cover) influence spatial and seasonal fluctuations of insect assemblages. The catches totalled 434 insect individuals classified into 75 species, 62 genera, 31 families and 7 orders, of which Coleoptera and Hymenoptera were the most abundant and constant over seasons and study stations. Spring and autumn presented the highest values of diversity parameters. Individual-based Chao-1 species richness estimator indicated 126 species for the total individuals captured in the Sabkha. Based on catch abundances, the structure of functional trophic groups was predators (37.3%), saprophages (26.7%), phytophages (20.5%), polyphages (10.8%), coprophages (4.6%); whereas in terms of numbers of species, they can be classified as phytophages (40%), predators (25.3%), polyphages (13.3%), saprophages (12%), coprophages (9.3%). The CCA demonstrated that phytophages and saprophages as well as Coleoptera and Orthoptera were positively correlated with the two parameters of vegetation, especially in spring and summer. While the abundance of coprophages was positively correlated with species richness of plants, polyphage density was positively associated with vegetation cover. The insect community showed high taxonomic and functional diversity that is closely related to diversity and vegetation cover in different stations of the wetland and seasons. PMID:25825682

Differences in the structure and functioning of two communities: Frondose and turf-forming macroalgal dominated habitats.

PubMed

M Martins, Gustavo; Hipólito, Cláudia; Parreira, Filipe; C L Prestes, Afonso; Dionísio, Maria A; N Azevedo, José M; Neto, Ana I

2016-05-01

In many coastal regions, vegetated habitats (e.g. kelps forests, seagrass beds) play a key role in the structure and functioning of shallow subtidal reef ecosystems, by modifying local environmental conditions and by providing food and habitat for a wide range of organisms. In some regions of the world, however, such idiosyncratic ecosystems are largely absent and are often replaced by less notable ecosystem formers. In the present study, we empirically compared the structure and functioning of two distinct shallow-water habitats present in the Azores: one dominated by smaller frondose brown macroalgae (Dictyotaceae and Halopteris) and one dominated by low-lying turfs. Two replicated areas of each habitat were sampled at two different times of the year, to assess spatial and temporal consistency of results. Habitats dominated by small fronds were significantly (ca. 3 times) more productive (when standardized per algal mass) compared to the turf-dominated habitats, and supported a distinct assemblage (both in terms of composition and abundance) of associated macrofauna. Unlike other well-known and studied vegetated habitats (i.e. kelp forests), however, no effects of habitat were found on the structure of benthonic fish assemblages. Results were spatially and temporally consistent suggesting that, in warmer temperate oceans, habitats dominated by species of smaller frondose brown algae can also play an important role in the structure and functioning of subtidal communities and may, to a certain extent, be considered analogous to other well-known vegetated habitats around the world (i.e. kelp forests, seagrass beds). Copyright © 2016 Elsevier Ltd. All rights reserved.

Multi-Scale Associations between Vegetation Cover and Woodland Bird Communities across a Large Agricultural Region

PubMed Central

Ikin, Karen; Barton, Philip S.; Stirnemann, Ingrid A.; Stein, John R.; Michael, Damian; Crane, Mason; Okada, Sachiko; Lindenmayer, David B.

2014-01-01

Improving biodiversity conservation in fragmented agricultural landscapes has become an important global issue. Vegetation at the patch and landscape-scale is important for species occupancy and diversity, yet few previous studies have explored multi-scale associations between vegetation and community assemblages. Here, we investigated how patch and landscape-scale vegetation cover structure woodland bird communities. We asked: (1) How is the bird community associated with the vegetation structure of woodland patches and the amount of vegetation cover in the surrounding landscape? (2) Do species of conservation concern respond to woodland vegetation structure and surrounding vegetation cover differently to other species in the community? And (3) Can the relationships between the bird community and the woodland vegetation structure and surrounding vegetation cover be explained by the ecological traits of the species comprising the bird community? We studied 103 woodland patches (0.5 - 53.8 ha) over two time periods across a large (6,800 km2) agricultural region in southeastern Australia. We found that both patch vegetation and surrounding woody vegetation cover were important for structuring the bird community, and that these relationships were consistent over time. In particular, the occurrence of mistletoe within the patches and high values of woody vegetation cover within 1,000 ha and 10,000 ha were important, especially for bird species of conservation concern. We found that the majority of these species displayed similar, positive responses to patch and landscape vegetation attributes. We also found that these relationships were related to the foraging and nesting traits of the bird community. Our findings suggest that management strategies to increase both remnant vegetation quality and the cover of surrounding woody vegetation in fragmented agricultural landscapes may lead to improved conservation of bird communities. PMID:24830684

Multi-scale associations between vegetation cover and woodland bird communities across a large agricultural region.

PubMed

Ikin, Karen; Barton, Philip S; Stirnemann, Ingrid A; Stein, John R; Michael, Damian; Crane, Mason; Okada, Sachiko; Lindenmayer, David B

2014-01-01

Improving biodiversity conservation in fragmented agricultural landscapes has become an important global issue. Vegetation at the patch and landscape-scale is important for species occupancy and diversity, yet few previous studies have explored multi-scale associations between vegetation and community assemblages. Here, we investigated how patch and landscape-scale vegetation cover structure woodland bird communities. We asked: (1) How is the bird community associated with the vegetation structure of woodland patches and the amount of vegetation cover in the surrounding landscape? (2) Do species of conservation concern respond to woodland vegetation structure and surrounding vegetation cover differently to other species in the community? And (3) Can the relationships between the bird community and the woodland vegetation structure and surrounding vegetation cover be explained by the ecological traits of the species comprising the bird community? We studied 103 woodland patches (0.5 - 53.8 ha) over two time periods across a large (6,800 km(2)) agricultural region in southeastern Australia. We found that both patch vegetation and surrounding woody vegetation cover were important for structuring the bird community, and that these relationships were consistent over time. In particular, the occurrence of mistletoe within the patches and high values of woody vegetation cover within 1,000 ha and 10,000 ha were important, especially for bird species of conservation concern. We found that the majority of these species displayed similar, positive responses to patch and landscape vegetation attributes. We also found that these relationships were related to the foraging and nesting traits of the bird community. Our findings suggest that management strategies to increase both remnant vegetation quality and the cover of surrounding woody vegetation in fragmented agricultural landscapes may lead to improved conservation of bird communities.

Atlas of relations between climatic parameters and distributions of important trees and shrubs in North America—Modern data for climatic estimation from vegetation inventories

USGS Publications Warehouse

Thompson, Robert S.; Anderson, Katherine H.; Pelltier, Richard T.; Strickland, Laura E.; Shafer, Sarah L.; Bartlein, Patrick J.

2012-01-01

Vegetation inventories (plant taxa present in a vegetation assemblage at a given site) can be used to estimate climatic parameters based on the identification of the range of a given parameter where all taxa in an assemblage overlap ("Mutual Climatic Range"). For the reconstruction of past climates from fossil or subfossil plant assemblages, we assembled the data necessary for such analyses for 530 woody plant taxa and eight climatic parameters in North America. Here we present examples of how these data can be used to obtain paleoclimatic estimates from botanical data in a straightforward, simple, and robust fashion. We also include matrices of climate parameter versus occurrence or nonoccurrence of the individual taxa. These relations are depicted graphically as histograms of the population distributions of the occurrences of a given taxon plotted against a given climatic parameter. This provides a new method for quantification of paleoclimatic parameters from fossil plant assemblages.

Estimating forest-grassland dynamics using soil phytolith assemblages and δ13C of soil organic matter

Treesearch

Becky K. Kerns; Margeret M. Moore; Stephen C. Hart

2001-01-01

Our objectives were to examine the relationship between contemporary vegetation and surface soil phytolith assemblages, and use phytoliths and δ13C of soil organic matter (SOM) to explore forest-grassland vegetation dynamics. We established plots within three canopy types (open, old-growth, and dense young pine) with different grass species compositions in a...

Benthic macrofaunal structure and secondary production in tropical estuaries on the Eastern Marine Ecoregion of Brazil.

PubMed

Bissoli, Lorena B; Bernardino, Angelo F

2018-01-01

Tropical estuaries are highly productive and support diverse benthic assemblages within mangroves and tidal flats habitats. Determining differences and similarities of benthic assemblages within estuarine habitats and between regional ecosystems may provide scientific support for management of those ecosystems. Here we studied three tropical estuaries in the Eastern Marine Ecoregion of Brazil to assess the spatial variability of benthic assemblages from vegetated (mangroves) and unvegetated (tidal flats) habitats. A nested sampling design was used to determine spatial scales of variability in benthic macrofaunal density, biomass and secondary production. Habitat differences in benthic assemblage composition were evident, with mangrove forests being dominated by annelids (Oligochaeta and Capitellidae) whereas peracarid crustaceans were also abundant on tidal flats. Macrofaunal biomass, density and secondary production also differed between habitats and among estuaries. Those differences were related both to the composition of benthic assemblages and to random spatial variability, underscoring the importance of hierarchical sampling in estuarine ecological studies. Given variable levels of human impacts and predicted climate change effects on tropical estuarine assemblages in Eastern Brazil, our data support the use of benthic secondary production to address long-term changes and improved management of estuaries in Eastern Brazil.

Benthic macrofaunal structure and secondary production in tropical estuaries on the Eastern Marine Ecoregion of Brazil

PubMed Central

Bissoli, Lorena B.

2018-01-01

Tropical estuaries are highly productive and support diverse benthic assemblages within mangroves and tidal flats habitats. Determining differences and similarities of benthic assemblages within estuarine habitats and between regional ecosystems may provide scientific support for management of those ecosystems. Here we studied three tropical estuaries in the Eastern Marine Ecoregion of Brazil to assess the spatial variability of benthic assemblages from vegetated (mangroves) and unvegetated (tidal flats) habitats. A nested sampling design was used to determine spatial scales of variability in benthic macrofaunal density, biomass and secondary production. Habitat differences in benthic assemblage composition were evident, with mangrove forests being dominated by annelids (Oligochaeta and Capitellidae) whereas peracarid crustaceans were also abundant on tidal flats. Macrofaunal biomass, density and secondary production also differed between habitats and among estuaries. Those differences were related both to the composition of benthic assemblages and to random spatial variability, underscoring the importance of hierarchical sampling in estuarine ecological studies. Given variable levels of human impacts and predicted climate change effects on tropical estuarine assemblages in Eastern Brazil, our data support the use of benthic secondary production to address long-term changes and improved management of estuaries in Eastern Brazil. PMID:29507833

Late Pleniglacial vegetation in eastern-central Europe: are there modern analogues in Siberia?

NASA Astrophysics Data System (ADS)

Magyari, Enikő Katalin; Kuneš, Petr; Jakab, Gusztáv; Sümegi, Pál; Pelánková, Barbora; Schäbitz, Frank; Braun, Mihály; Chytrý, Milan

2014-07-01

To characterize Late Pleniglacial (LPG: 26.5-15 ka cal BP) and particularly Last Glacial Maximum (LGM: 21 ± 2 ka cal BP) vegetation and climate, fossil pollen assemblages are often compared with modern pollen assemblages. Given the non-analogue climate of the LPG, a key question is how glacial pollen assemblages and thereby vegetation compare with modern vegetation. In this paper we present three LPG pollen records from the Carpathian Basin and the adjoining Carpathian Mountains to address this question and provide a concise compositional characterization of the LPG vegetation. Fossil pollen assemblages were compared with surface pollen spectra from the Altai-Sayan Mountains in southern Siberia. This area shows many similarities with the LPG vegetation of eastern-central Europe, and has long been considered as its best modern analogue. Ordination and analogue matching were used to characterize vegetation composition and find the best analogues. Our results show that few LPG pollen assemblages have statistically significant analogues in southern Siberia. When analogue pairings occur they suggest the predominance of wet and mesic grasslands and dry steppe in the studied region. Wooded vegetation types (continental and suboceanic hemiboreal forest, continental taiga) appear as significant analogues only in a few cases during the LGM and more frequently after 16 ka cal BP. These results suggest that the LPG landscape of the Carpathian Basin was dominated by dry steppe that occurred outside the river floodplains, while wet and mesic grasslands occurred in the floodplains and on other sites influenced by ground water. Woody vegetation mainly occurred in river valleys, on wet north-facing hillsides, and scattered trees were likely also present on the loess plateaus. The dominant woody species were Larix, Pinus sylvestris, Pinus mugo, Pinus cembra, Picea abies, Betula pendula/pubescens, Betula nana, Juniperus, Hippophaë rhamnoides, Populus, Salix and Alnus. The pollen records suggest uninterrupted presence of mesophilous temperate trees (Quercus, Ulmus, Corylus, Fagus and Fraxinus excelsior) in the Eastern Carpathian Mountains throughout the LPG. We demonstrate that the LPG vegetation in this area was characterized by increasing grass cover and high frequency of wildfires. We conclude that pollen spectra over represent trees in the forest-steppe landscape of the LPG, furthermore pollen-based quantitative climate reconstructions for the LPG are challenging in this area due to the scarcity of modern analogues.

What role do beds of submerged macrophytes play in structuring estuarine fish assemblages? Lessons from a warm-temperate South African estuary

NASA Astrophysics Data System (ADS)

Sheppard, Jill N.; James, Nicola C.; Whitfield, Alan K.; Cowley, Paul D.

2011-11-01

Habitat variability is one of the factors influencing species richness within estuarine systems, and a loss of habitat can result in a restructuring of the estuarine ichthyofaunal assemblage, particularly if these conditions persist over long time periods. The potential effects of the loss of extensive submerged macrophyte beds ( Ruppia cirrhosa and Potamogeton pectinatus) on an estuarine fish assemblage were investigated through an analysis of a long-term seine net catch dataset from the temporarily open/closed East Kleinemonde Estuary, South Africa. Catch data for a 12-year period, encompassing six years of macrophyte presence and six years of macrophyte senescence, indicated that the loss of this habitat did not influence species richness but changes in the relative abundance of certain species were evident. A shift in dominance from vegetation-associated species to those associated with sandy environments ( e.g. members of the family Mugilidae) was observed. However, species wholly dependent on macrophytes such as the critically endangered estuarine pipefish Syngnathus watermeyeri were only recorded during years when macrophyte beds were present, while vegetation-associated species such as the sparid Rhabdosargus holubi persisted at lower levels of relative abundance. The reduced abundance of all vegetation-associated fish species during years of macrophyte senescence was probably reflective of declining food resources resulting from the loss of macrophyte beds and/or increased vulnerability to predation. Submerged beds of aquatic plants are therefore important habitats within temporarily open/closed estuaries, South Africa's dominant estuary type.

Effects of local land-use on riparian vegetation, water quality, and the functional organization of macroinvertebrate assemblages.

PubMed

Fierro, Pablo; Bertrán, Carlos; Tapia, Jaime; Hauenstein, Enrique; Peña-Cortés, Fernando; Vergara, Carolina; Cerna, Cindy; Vargas-Chacoff, Luis

2017-12-31

Land-use change is a principal factor affecting riparian vegetation and river biodiversity. In Chile, land-use change has drastically intensified over the last decade, with native forests converted to exotic forest plantations and agricultural land. However, the effects thereof on aquatic ecosystems are not well understood. Closing this knowledge gap first requires understanding how human perturbations affect riparian and stream biota. Identified biological indicators could then be applied to determine the health of fluvial ecosystems. Therefore, this study investigated the effects of land-use change on the health of riparian and aquatic ecosystems by assessing riparian vegetation, water quality, benthic macroinvertebrate assemblages, and functional feeding groups. Twenty-one sites in catchment areas with different land-uses (i.e. pristine forests, native forests, exotic forest plantations, and agricultural land) were selected and sampled during the 2010 to 2012 dry seasons. Riparian vegetation quality was highest in pristine forests. Per the modified Macroinvertebrate Family Biotic Index for Chilean species, the best conditions existed in native forests and the worst in agricultural catchments. Water quality and macroinvertebrate assemblages significantly varied across land-use areas, with forest plantations and agricultural land having high nutrient concentrations, conductivity, suspended solids, and apparent color. Macroinvertebrate assemblage diversity was lowest for agricultural and exotic forest plantation catchments, with notable non-insect representation. Collector-gatherers were the most abundant functional feeding group, suggesting importance independent of land-use. Land-use areas showed no significant differences in functional feeding groups. In conclusion, anthropogenic land-use changes were detectable through riparian quality, water quality, and macroinvertebrate assemblages, but not through functional feeding groups. These data, particularly the riparian vegetation and macroinvertebrate assemblage parameters, could be applied towards the conservation and management of riparian ecosystems through land-use change studies. Copyright © 2017 Elsevier B.V. All rights reserved.

Lethal control of an apex predator has unintended cascading effects on forest mammal assemblages.

PubMed

Colman, N J; Gordon, C E; Crowther, M S; Letnic, M

2014-05-07

Disruption to species-interaction networks caused by irruptions of herbivores and mesopredators following extirpation of apex predators is a global driver of ecosystem reorganization and biodiversity loss. Most studies of apex predators' ecological roles focus on effects arising from their interactions with herbivores or mesopredators in isolation, but rarely consider how the effects of herbivores and mesopredators interact. Here, we provide evidence that multiple cascade pathways induced by lethal control of an apex predator, the dingo, drive unintended shifts in forest ecosystem structure. We compared mammal assemblages and understorey structure at seven sites in southern Australia. Each site comprised an area where dingoes were poisoned and an area without control. The effects of dingo control on mammals scaled with body size. Activity of herbivorous macropods, arboreal mammals and a mesopredator, the red fox, were greater, but understorey vegetation sparser and abundances of small mammals lower, where dingoes were controlled. Structural equation modelling suggested that both predation by foxes and depletion of understorey vegetation by macropods were related to small mammal decline at poisoned sites. Our study suggests that apex predators' suppressive effects on herbivores and mesopredators occur simultaneously and should be considered in tandem in order to appreciate the extent of apex predators' indirect effects.

Lethal control of an apex predator has unintended cascading effects on forest mammal assemblages

PubMed Central

Colman, N. J.; Gordon, C. E.; Crowther, M. S.; Letnic, M.

2014-01-01

Disruption to species-interaction networks caused by irruptions of herbivores and mesopredators following extirpation of apex predators is a global driver of ecosystem reorganization and biodiversity loss. Most studies of apex predators' ecological roles focus on effects arising from their interactions with herbivores or mesopredators in isolation, but rarely consider how the effects of herbivores and mesopredators interact. Here, we provide evidence that multiple cascade pathways induced by lethal control of an apex predator, the dingo, drive unintended shifts in forest ecosystem structure. We compared mammal assemblages and understorey structure at seven sites in southern Australia. Each site comprised an area where dingoes were poisoned and an area without control. The effects of dingo control on mammals scaled with body size. Activity of herbivorous macropods, arboreal mammals and a mesopredator, the red fox, were greater, but understorey vegetation sparser and abundances of small mammals lower, where dingoes were controlled. Structural equation modelling suggested that both predation by foxes and depletion of understorey vegetation by macropods were related to small mammal decline at poisoned sites. Our study suggests that apex predators’ suppressive effects on herbivores and mesopredators occur simultaneously and should be considered in tandem in order to appreciate the extent of apex predators’ indirect effects. PMID:24619441

Pollen assemblages as paleoenvironmental proxies in the Florida Everglades

USGS Publications Warehouse

Willard, D.A.; Weimer, L.M.; Riegel, W.L.

2001-01-01

Analysis of 170 pollen assemblages from surface samples in eight vegetation types in the Florida Everglades indicates that these wetland sub-environments are distinguishable from the pollen record and that they are useful proxies for hydrologic and edaphic parameters. Vegetation types sampled include sawgrass marshes, cattail marshes, sloughs with floating aquatics, wet prairies, brackish marshes, tree islands, cypress swamps, and mangrove forests. The distribution of these vegetation types is controlled by specific environmental parameters, such as hydrologic regime, nutrient availability, disturbance level, substrate type, and salinity; ecotones between vegetation types may be sharp. Using R-mode cluster analysis of pollen data, we identified diagnostic species groupings; Q-mode cluster analysis was used to differentiate pollen signatures of each vegetation type. Cluster analysis and the modern analog technique were applied to interpret vegetational and environmental trends over the last two millennia at a site in Water Conservation Area 3A. The results show that close modern analogs exist for assemblages in the core and indicate past hydrologic changes at the site, correlated with both climatic and land-use changes. The ability to differentiate marshes with different hydrologic and edaphic requirements using the pollen record facilitates assessment of relative impacts of climatic and anthropogenic changes on this wetland ecosystem on smaller spatial and temporal scales than previously were possible. ?? 2001 Elsevier Science B.V.

Ecological Structure of Recent and Last Glacial Mammalian Faunas in Northern Eurasia: The Case of Altai-Sayan Refugium

PubMed Central

Pavelková Řičánková, Věra; Robovský, Jan; Riegert, Jan

2014-01-01

Pleistocene mammalian communities display unique features which differ from present-day faunas. The paleocommunities were characterized by the extraordinarily large body size of herbivores and predators and by their unique structure consisting of species now inhabiting geographically and ecologically distinct natural zones. These features were probably the result of the unique environmental conditions of ice age ecosystems. To analyze the ecological structure of Last Glacial and Recent mammal communities we classified the species into biome and trophic-size categories, using Principal Component analysis. We found a marked similarity in ecological structure between Recent eastern Altai-Sayan mammalian assemblages and comparable Pleistocene faunas. The composition of Last Glacial and Recent eastern Altai-Sayan assemblages were characterized by the occurrence of large herbivore and predator species associated with steppe, desert and alpine biomes. These three modern biomes harbor most of the surviving Pleistocene mammals. None of the analyzed Palearctic Last Glacial faunas showed affinity to the temperate forest, taiga, or tundra biome. The Eastern part of the Altai-Sayan region could be considered a refugium of the Last Glacial-like mammalian assemblages. Glacial fauna seems to persist up to present in those areas where the forest belt does not separate alpine vegetation from the steppes and deserts. PMID:24454791

Salt lakes of La Mancha (Central Spain): A hot spot for tiger beetle (Carabidae, Cicindelinae) species diversity

PubMed Central

Rodríguez-Flores, Paula C.; Gutiérrez-Rodríguez, Jorge; Aguirre-Ruiz, Ernesto F.; García-París, Mario

2016-01-01

Abstract The tiger beetle assemblage of the wetlands of La Mancha (central Spain) comprises nine species: Calomera littoralis littoralis, Cephalota maura maura, Cephalota circumdata imperialis, Cephalota dulcinea, Cicindela campestris campestris, Cicindela maroccana, Cylindera paludosa, Lophyra flexuosa flexuosa, and Myriochila melancholica melancholica. This assemblage represents the largest concentration of tiger beetles in a single 1º latitude / longitude square in Europe. General patterns of spatial and temporal segregation among species are discussed based on observations of 1462 specimens registered during an observation period of one year, from April to August. The different species of Cicindelini appear to be distributed over space and time, with little overlapping among them. Three sets of species replace each other phenologically as the season goes on. Most of the species occupy drying or dried salt lakes and salt marshes, with sparse vegetation cover. Spatial segregation is marked in terms of substrate and vegetation use. Calomera littoralis and Myriochila melancholica have been observed mainly on wet soils; Cephalota circumdata on dry open saline flats; Cephalota dulcinea and Cylindera paludosa in granulated substrates with typical halophytic vegetation; Cephalota maura is often present in man-modified areas. Cephalota circumdata and Cephalota dulcinea are included as species of special interest in the list of protected species in Castilla–La Mancha. Conservation problems for the Cicindelini assemblage arise from agricultural activities and inadequate use of sport vehicles. Attempts at restoring the original habitat, supressing old semi-industrial structures, may affect the spatial heterogeneity of the lakes, and have an effect on Cicindelinae diversity. PMID:27006617

Fish assemblages in coastal lagoons in land-uplift succession: The relative importance of local and regional environmental gradients

NASA Astrophysics Data System (ADS)

Snickars, Martin; Sandström, Alfred; Lappalainen, Antti; Mattila, Johanna; Rosqvist, Kajsa; Urho, Lauri

2009-01-01

The assemblages of young-of-the-year fish were studied in coastal lagoons in an archipelago with post-glacial land-uplift, which affects environmental gradients at local and regional scale, i.e. lagoon habitat isolation and archipelago position, respectively. The categorisation of 40 undisturbed lagoons into nine habitat types based on habitat isolation and archipelago position was supported by clear relationships with spring temperature and total fish abundance. Rutilus rutilus, breams ( Abramis/Blicca sp.) and Perca fluviatilis were the most abundant and frequently occurring species. The fish assemblage differed among the nine habitat types. Rutilus rutilus, P. fluviatilis and breams were discriminating species in the majority of habitat types with low physical harshness, whereas Alburnus alburnus and Gasterosteus aculeatus increased their contributions in habitat types with high physical harshness. Rutilus rutilus and breams were thus common in lagoons with high habitat isolation situated in the inner archipelago. These lagoons were characterised by warm water and high vegetation coverage. Gasterosteus aculeatus was restricted to lagoons with low habitat isolation and exposure and low vegetation coverage, situated in the outer archipelago. Perca fluviatilis had the widest distribution of all species. The coverage of two macrophytes, Potamogeton perfoliatus and Zannichellia palustris, and salinity matched best the distance among habitat types. These habitat characteristics, as well as the fish abundances and assemblages differed most across the habitat types in the outer and mid archipelago zones and in the lowest habitat isolation. These patterns suggest that the structuring effect of habitat isolation increases along the archipelago gradient as differences between local and regional conditions increase. In the inner archipelago, overall low physical harshness induces homogeneous conditions and the habitat isolation is less important here than in the other zones. We suggest that this difference in the relative importance of the two gradients depending on the level of respective gradient ultimately forms these heterogeneous coastal habitats in a successional landscape. Rutilus rutilus and P. fluviatilis were responsible for large parts of the assemblage patterns. Although sympatric due to similar habitat requirements, differences in dispersal capability, competitive ability and predation vulnerability may add explanation to detected differences in distribution and abundance in these two species in an open system. Our results also stress the structuring role of vegetation in terms of total coverage and species composition, as these two aspects of macrophyte diversity may act as complementary habitat modifiers across gradients of physical harshness.

Food availability in exotic grasslands: a potential mechanism for depauperate breeding assemblages

USGS Publications Warehouse

George, Andrew D.; O'Connell, Timothy J.; Hickman, Karen R.; Leslie, David M.

2013-01-01

We investigated the influence of Old World bluestem (Bothriochloa ischaemum; OWB) monocultures on grassland bird abundance through analysis of vegetation structure and food availability. We compared breeding bird density, vegetation structure and composition, and arthropod biomass between six native grass and six OWB fields in the southern Great Plains. The OWB fields supported 1.70 ± 0.27 (mean ± SE) Grasshopper Sparrows (Ammodramus savannarum) per ha compared to 0.95 ± 0.25 in native grass fields, but total species richness was greater in native grass fields (40 versus 28 species). Density of some bird species was correlated with vegetation structure regardless of field type, suggesting that management practices may be more influential than plant species composition. Mean arthropod biomass was 3.39× greater in native grass fields than in OWB monocultures. Native grass fields provided habitat for a larger complement of birds than did OWB monocultures, and reduced food availability in OWB fields suggests a mechanism for that difference.

Quantitative estimation of bioclimatic parameters from presence/absence vegetation data in North America by the modern analog technique

USGS Publications Warehouse

Thompson, R.S.; Anderson, K.H.; Bartlein, P.J.

2008-01-01

The method of modern analogs is widely used to obtain estimates of past climatic conditions from paleobiological assemblages, and despite its frequent use, this method involved so-far untested assumptions. We applied four analog approaches to a continental-scale set of bioclimatic and plant-distribution presence/absence data for North America to assess how well this method works under near-optimal modern conditions. For each point on the grid, we calculated the similarity between its vegetation assemblage and those of all other points on the grid (excluding nearby points). The climate of the points with the most similar vegetation was used to estimate the climate at the target grid point. Estimates based the use of the Jaccard similarity coefficient had smaller errors than those based on the use of a new similarity coefficient, although the latter may be more robust because it does not assume that the "fossil" assemblage is complete. The results of these analyses indicate that presence/absence vegetation assemblages provide a valid basis for estimating bioclimates on the continental scale. However, the accuracy of the estimates is strongly tied to the number of species in the target assemblage, and the analog method is necessarily constrained to produce estimates that fall within the range of observed values. We applied the four modern analog approaches and the mutual overlap (or "mutual climatic range") method to estimate bioclimatic conditions represented by the plant macrofossil assemblage from a packrat midden of Last Glacial Maximum age from southern Nevada. In general, the estimation approaches produced similar results in regard to moisture conditions, but there was a greater range of estimates for growing-degree days. Despite its limitations, the modern analog technique can provide paleoclimatic reconstructions that serve as the starting point to the interpretation of past climatic conditions.

Early growth interactions between a mangrove and an herbaceous salt marsh species are not affected by elevated CO2 or drought

NASA Astrophysics Data System (ADS)

Howard, Rebecca J.; Stagg, Camille L.; Utomo, Herry S.

2018-07-01

Increasing atmospheric carbon dioxide (CO2) concentrations are likely to influence future distributions of plants and plant community structure in many regions of the world through effects on photosynthetic rates. In recent decades the encroachment of woody mangrove species into herbaceous marshes has been documented along the U.S. northern Gulf of Mexico coast. These species shifts have been attributed primarily to rising sea levels and warming winter temperatures, but the role of elevated CO2 and water availability may become more prominent drivers of species interactions under future climate conditions. Drought has been implicated as a major factor contributing to salt marsh vegetation dieback in this region. In this greenhouse study we examined the effects of CO2 concentration (∼380 ppm, ∼700 ppm) and water regime (drought, saturated, flooded) on early growth of Avicennia germinans, a C3 mangrove species, and Spartina alterniflora, a C4 grass. Plants were grown in monocultures and in a mixed-species assemblage. We found that neither species responded to elevated CO2 over the 10-month duration of the experiment, and there were few interactions between experimental factors. Two effects of water regime were documented: lower A. germinans pneumatophore biomass under drought conditions, and lower belowground biomass under flooded conditions regardless of planting assemblage. Evidence of interspecific interactions was noted. Competition for aboveground resources (e.g., light) was indicated by lower S. alterniflora stem biomass in mixed-species assemblage compared to biomass in S. alterniflora monocultures. Pneumatophore biomass of A. germinans was reduced when grown in monoculture compared to the mixed-species assemblage, indicating competition for belowground resources. These interactions provide insight into how these species may respond following major disturbance events that lead to vegetation dieback. Site variation in propagule availability and physico-chemical conditions will determine plant community composition and structure following such disturbances when these two species co-occur.

VEGETATION AND POLLEN RELATIONSHIP IN EASTERN CANADA

EPA Science Inventory

The relationship between the vegetation and modern pollen assemblages in eastern Canada is summarized and analyzed using isopoll maps, ordination, and cluster analysis. he major vegetation zones recognized in the region are the shrub tundra, forest tundra (divided into shrub and ...

Sediment and carbon deposition vary among vegetation assemblages in a coastal salt marsh

NASA Astrophysics Data System (ADS)

Kelleway, Jeffrey J.; Saintilan, Neil; Macreadie, Peter I.; Baldock, Jeffrey A.; Ralph, Peter J.

2017-08-01

Coastal salt marshes are dynamic, intertidal ecosystems that are increasingly being recognised for their contributions to ecosystem services, including carbon (C) accumulation and storage. The survival of salt marshes and their capacity to store C under rising sea levels, however, is partially reliant upon sedimentation rates and influenced by a combination of physical and biological factors. In this study, we use several complementary methods to assess short-term (days) deposition and medium-term (months) accretion dynamics within a single marsh that contains three salt marsh vegetation types common throughout southeastern (SE) Australia.We found that surface accretion varies among vegetation assemblages, with medium-term (19 months) bulk accretion rates in the upper marsh rush (Juncus) assemblage (1.74 ± 0.13 mm yr-1) consistently in excess of estimated local sea-level rise (1.15 mm yr-1). Accretion rates were lower and less consistent in both the succulent (Sarcocornia, 0.78 ± 0.18 mm yr-1) and grass (Sporobolus, 0.88 ± 0.22 mm yr-1) assemblages located lower in the tidal frame. Short-term (6 days) experiments showed deposition within Juncus plots to be dominated by autochthonous organic inputs with C deposition rates ranging from 1.14 ± 0.41 mg C cm-2 d-1 (neap tidal period) to 2.37 ± 0.44 mg C cm-2 d-1 (spring tidal period), while minerogenic inputs and lower C deposition dominated Sarcocornia (0.10 ± 0.02 to 0.62 ± 0.08 mg C cm-2 d-1) and Sporobolus (0.17 ± 0.04 to 0.40 ± 0.07 mg C cm-2 d-1) assemblages.Elemental (C : N), isotopic (δ13C), mid-infrared (MIR) and 13C nuclear magnetic resonance (NMR) analyses revealed little difference in either the source or character of materials being deposited among neap versus spring tidal periods. Instead, these analyses point to substantial redistribution of materials within the Sarcocornia and Sporobolus assemblages, compared to high retention and preservation of organic inputs in the Juncus assemblage. By combining medium-term accretion quantification with short-term deposition measurements and chemical analyses, we have gained novel insights into above-ground biophysical processes that may explain previously observed regional differences in surface dynamics among key salt marsh vegetation assemblages. Our results suggest that Sarcocornia and Sporobolus assemblages may be particularly susceptible to changes in sea level, though quantification of below-ground processes (e.g. root production, compaction) is needed to confirm this.

Diversity and Structure of Fungal Communities in Neotropical Rainforest Soils: The Effect of Host Recurrence.

PubMed

Schimann, Heidy; Bach, Cyrille; Lengelle, Juliette; Louisanna, Eliane; Barantal, Sandra; Murat, Claude; Buée, Marc

2017-02-01

The patterns of the distribution of fungal species and their potential interactions with trees remain understudied in Neotropical rainforests, which harbor more than 16,000 tree species, mostly dominated by endomycorrhizal trees. Our hypothesis was that tree species shape the non-mycorrhizal fungal assemblages in soil and litter and that the diversity of fungal communities in these two compartments is partly dependent on the coverage of trees in the Neotropical rainforest. In French Guiana, a long-term plantation and a natural forest were selected to test this hypothesis. Fungal ITS1 regions were sequenced from soil and litter samples from within the vicinity of tree species. A broad range of fungal taxa was found, with 42 orders and 14 classes. Significant spatial heterogeneity in the fungal communities was found without strong variation in the species richness and evenness among the tree plots. However, tree species shaped the fungal assemblages in the soil and litter, explaining up to 18 % of the variation among the communities in the natural forest. These results demonstrate that vegetation cover has an important effect on the structure of fungal assemblages inhabiting the soil and litter in Amazonian forests, illustrating the relative impact of deterministic processes on fungal community structures in these highly diverse ecosystems.

Zooplankton assemblages in montane lakes and ponds of Mount Rainier National Park, Washington State, USA

USGS Publications Warehouse

Larson, G.L.; Hoffman, R.; McIntire, C.D.; Lienkaemper, G.; Samora, B.

2009-01-01

Water quality and zooplankton samples were collected during the ice-free periods between 1988 and 2005 from 103 oligotrophic montane lakes and ponds located in low forest to alpine vegetation zones in Mount Rainier National Park, Washington State, USA. Collectively, 45 rotifer and 44 crustacean taxa were identified. Most of the numerically dominant taxa appeared to have wide niche breadths. The average number of taxa per lake decreased with elevation and generally increased as maximum lake depths increased (especially for rotifers). With one exception, fish presence/absence did not explain the taxonomic compositions of crustacean zooplankton assemblages. Many rotifer species were common members of zooplankton assemblages in montane lakes and ponds in western North America, whereas the crustacean taxa were common to some areas of the west, but not others. Constraints of the environmental variables did not appear to provide strong gradients to separate the distributions of most zooplankton species. This suggests that interspecific competitive interactions and stochastic processes regulate the taxonomic structures of the zooplankton assemblages at the landscape level. Crustacean species that had broad niche breadths were associated with different rotifer taxa across the environmental gradients. Studies of zooplankton assemblages need to address both crustacean and rotifer taxa, not one or the other.

Seasonal and spatial variations in fish and macrocrustacean assemblage structure in Mad Island Marsh estuary, Texas

NASA Astrophysics Data System (ADS)

Akin, S.; Winemiller, K. O.; Gelwick, F. P.

2003-05-01

Fish and macrocrustacean assemblage structure was analyzed along an estuarine gradient at Mad Island Marsh (MIM), Matagorda Bay, TX, during March 1998-August 1999. Eight estuarine-dependent fish species accounted for 94% of the individual fishes collected, and three species accounted for 96% of macrocrustacean abundance. Consistent with evidence from other Gulf of Mexico estuarine studies, species richness and abundance were highest during late spring and summer, and lowest during winter and early spring. Sites near the bay supported the most individuals and species. Associations between fish abundance and environmental variables were examined with canonical correspondence analysis. The dominant gradient was associated with water depth and distance from the bay. The secondary gradient reflected seasonal variation and was associated with temperature, salinity, dissolved oxygen, and vegetation cover. At the scales examined, estuarine biota responded to seasonal variation more than spatial variation. Estuarine-dependent species dominated the fauna and were common throughout the open waters of the shallow lake during winter-early spring when water temperature and salinity were low and dissolved oxygen high. During summer-early fall, sub-optimal environmental conditions (high temperature, low DO) in upper reaches accounted for strong spatial variation in assemblage composition. Small estuarine-resident fishes and the blue crab ( Callinectes sapidus) were common in warm, shallow, vegetated inland sites during summer-fall. Estuarine-dependent species were common at deeper, more saline locations near the bay during this period. During summer, freshwater species, such as gizzard shad ( Dorosoma cepedianum) and gars ( Lepisosteus spp.), were positively associated with water depth and proximity to the bay. The distribution and abundance of fishes in MIM appear to result from the combined effects of endogenous, seasonal patterns of reproduction and migration operating on large spatial scales, and species-specific response to local environmental variation.

Diversity and Spatiotemporal Distribution of Larval Odonate Assemblages in Temperate Neotropical Farm Ponds

PubMed Central

Pires, Mateus Marques; Kotzian, Carla Bender; Spies, Marcia Regina

2014-01-01

Abstract Farm ponds help maintain diversity in altered landscapes. However, studies on the features that drive this type of property in the Neotropics are still lacking, especially for the insect fauna. We analyzed the spatial and temporal distribution of odonate larval assemblages in farm ponds. Odonates were sampled monthly at four farm ponds from March 2008 to February 2009 in a temperate montane region of southern Brazil. A small number of genera were frequent and accounted for most of the dominant fauna. The dominant genera composition differed among ponds. Local spatial drivers such as area, hydroperiod, and margin vegetation structure likely explain these results more than spatial predictors due to the small size of the study area. Circular analysis detected seasonal effect on assemblage abundance but not on richness. Seasonality in abundance was related to the life cycles of a few dominant genera. This result was explained by temperature and not rainfall due to the temperate climate of the region studied. The persistence of dominant genera and the sparse occurrence of many taxa over time probably led to a lack in a seasonal pattern in assemblage richness. PMID:25527585

Surface soil phytoliths as vegetation and altitude indicators: a study from the southern Himalaya

PubMed Central

An, Xiaohong; Lu, Houyuan; Chu, Guoqiang

2015-01-01

Phytoliths represent one of the few available altitudinal vegetation proxies for mountain ecosystems. This study analyzed 41 topsoil phytolith samples collected from five altitudinal zones in the southern Himalaya as far as, and beyond, the timberline, from tropical forest (up to 1,000 m a.s.l.) to subtropical forest (1,000–2,000 m a.s.l.), to temperate forest (2,000–3,000 m a.s.l.), to subalpine forest (3,000–4,100 m a.s.l.) and finally to alpine scrub (4,100–5,200 m a.s.l.). The statistical results show a good correlation between phytolith assemblages and these five altitudinal vegetation zones: the five phytolith assemblages identified effectively differentiated these five altitudinal vegetation zones. In particular, coniferous phytoliths accurately indicated the timberline. Additionally, we tested the phytolith index Ic (a proxy for estimating the percentage of Pooideae vis-à-vis the total grass content) as a quantifier of phytolith variety versus altitude. Ic increased along altitude, as expected. An investigation of phytoliths provided an initial basis for the analysis of the composition of gramineous vegetation. Furthermore, redundancy analysis and discriminant analysis also suggested a significant correlation between phytolith assemblages and altitude. Our research therefore provides an up-to-date analogue for the reconstruction of changes to palaeovegetation and palaeoaltitude in mountainous areas. PMID:26500137

The response of vegetation to geochemical conditions

NASA Technical Reports Server (NTRS)

Mouat, D. A.

1983-01-01

An understanding of the factors of vegetation response to changes in the geochemistry of the environment may give exploration geologists and other researchers an additional and effective tool for rock type discrimination. The factors of vegetation response can be grouped into three principal categories: structural or morphological factors, taxonomic factors which include indicator flora as well as vegetation assemblages, and spectral factors which represent the manner in which the vegetation interacts with electromagnetic radiation. The response of these factors over areas of anomalous mineralization is often unique and may be due to nutrient deficiencies and/or imbalances, toxicity and stress caused by anomalous mineral concentrations in the soil, low water retention, and plant competition. The successful use of geobotanical techniques results from the integration of the geobotanical observations with other techniques. The use of remote sensing in such a program must be predicated on those factors which can be discriminated within the constraints of the spatial, spectral, radiometric, and temporal resolutions of the sensing system and with appropriate analytical techniques.

Effects of climate change on forest vegetation [Chapter 6

Treesearch

Patrick N. Behrens; Robert E. Keane; David L. Peterson; Joanne J. Ho

2018-01-01

Projected rapid changes in climate will affect vegetation assemblages in the Intermountain Adaptation Partnership (IAP) region directly and indirectly. Direct effects include altered vegetation growth, mortality, and regeneration, and indirect effects include changes in disturbance regimes (Chapter 8) and interactions with altered ecosystem processes (e.g., hydrology,...

Forest edges: Effects on vegetation, environmental gradients and local avian communities in the Sierra Juarez, Oaxaca, Mexico

NASA Astrophysics Data System (ADS)

Burcsu, Theresa Katherine

Edge effects are among the most serious threats to forest integrity because as global forest cover decreases overall, forest edge influence increases proportionally, driving habitat change and loss. Edge effects occur at the division between adjacent habitat types. Our understanding of edge effects comes mainly from tropical wet, temperate and boreal forests. Because forest structure in moisture-limited forests differs from wetter forest types, edge dynamics are likely to differ as well. Moreover, dry forests in the tropics have been nearly eliminated or exist only as forest fragments, making edge influence an important conservation and management concern for remaining dry forests. This study addresses this gap in the edge influence knowledge by examining created, regenerating edges associated with forest management in a seasonally dry pine-oak forest of Oaxaca, creating a new data point in edge effects research. In this study I used Landsat TM imagery and a modified semivariance analysis to estimate the distance of edge influence for vegetation. I also used field methods to characterize forest structure and estimate edge influence on canopy and subcanopy vegetation. To finalize the project I extended the study to bird assemblages to identify responses and habitat preferences to local-scale changes associated with regenerating edges created by group-selection timber harvest. Remote sensing analysis estimated that the distance of edge influence was 30-90 m from the edge. Vegetation analysis suggested that edge effects were weak relative to wetter forest types and that remote sensing data did not provide an estimate that was directly applicable to field-measured vegetative edge effects. The bird assemblages likewise responded weakly to habitat change associated with edge effect. Open canopy structure, simple vertical stratigraphy, and topographic variation create forest conditions in which small openings do not create a high contrast to undisturbed forest. Thus, in this seasonally dry, open forest, vegetation and bird communities respond less to small openings than they do in wetter, more closed-canopy forests. Management practices and historical land-use interact and interfere with the detectability of edge influence in our study area. These results support hypotheses proposed for open forest types and suggest that patterns in edge influence in wet forest types may not be applicable to dry sites.

Desert mammal populations are limited by introduced predators rather than future climate change

PubMed Central

Wardle, Glenda M.; Dickman, Chris R.

2017-01-01

Climate change is predicted to place up to one in six species at risk of extinction in coming decades, but extinction probability is likely to be influenced further by biotic interactions such as predation. We use structural equation modelling to integrate results from remote camera trapping and long-term (17–22 years) regional-scale (8000 km2) datasets on vegetation and small vertebrates (greater than 38 880 captures) to explore how biotic processes and two key abiotic drivers influence the structure of a diverse assemblage of desert biota in central Australia. We use our models to predict how changes in rainfall and wildfire are likely to influence the cover and productivity of the dominant vegetation and the impacts of predators on their primary rodent prey over a 100-year timeframe. Our results show that, while vegetation cover may decline due to climate change, the strongest negative effect on prey populations in this desert system is top-down suppression from introduced predators. PMID:29291051

Late-Glacial Environmental Changes South of the Wisconsinan Terminal Moraine in the Eastern United States

NASA Astrophysics Data System (ADS)

Russell, Emily W. B.; Stanford, Scott D.

2000-01-01

Palynological analyses of two sediment cores, one 2.4 m long from northern Delaware, dated about 16,300 to 14,700 14C yr B.P., and one 1.8 m long from New Jersey just south of the Wisconsinan terminal moraine and dated about 13,600 to 12,500 14C yr B.P., give the first detailed evidence of vegetation in this area during these periods. The overall assemblages are similar to each other, with Picea and Pinus dominating the arboreal pollen and Poaceae and Cyperaceae the herbaceous flora. Nonarboreal pollen contributes about 30-50% of the total, indicating a very open vegetation or a mix of forest patches and open areas. Especially in Delaware, there is a diversity of other herbaceous pollen, including members of the Asteraceae, Fabaceae, and Ranunculaceae. The assemblages do not resemble current North American tundra or boreal forest assemblages; rather, they resemble assemblages characteristic of tundra on recently exposed land surfaces north of the Wisconsinan terminal moraine. The persistence of the assemblages for 1500-2000 years in late-glacial time suggests stable and cold climate during this time of glacier retreat.

Late-glacial environmental changes south of the Wisconsinan terminal moraine in the Eastern United States

USGS Publications Warehouse

Russell, E.W.B.; Stanford, S.D.

2000-01-01

Palynological analyses of two sediment cores, one 2.4 m long from northern Delaware, dated about 16,300 to 14,700 14C yr B.P., and one 1.8 m long from New Jersey just south of the Wisconsinan terminal moraine and dated about 13,600 to 12,500 14C yr B.P., give the first detailed evidence of vegetation in this area during these periods. The overall assemblages are similar to each other, with Picea and Pinus dominating the arboreal pollen and Poaceae and Cyperaceae the herbaceous flora. Nonarboreal pollen contributes about 30-50% of the total, indicating a very open vegetation or a mix of forest patches and open areas. Especially in Delaware, there is a diversity of other herbaceous pollen, including members of the Asteraceae, Fabaceae, and Ranunculaceae. The assemblages do not resemble current North American tundra or boreal forest assemblages; rather, they resemble assemblages characteristic of tundra on recently exposed land surfaces north of the Wisconsinan terminal moraine. The persistence of the assemblages for 1500-2000 years in late-glacial time suggests stable and cold climate during this time of glacier retreat.

Elk herbivory alters small mammal assemblages in high elevation drainages

USGS Publications Warehouse

Parsons, Elliott W.R.; Maron, John L.; Martin, Thomas E.

2012-01-01

Together, our results show that relaxation of heavy herbivore pressure by a widespread native ungulate can lead to rapid changes in small mammal assemblages. Moreover, exclusion of large herbivores can yield rapid responses by vegetation that may enhance or maintain habitat quality for small mammal populations.

[Altitudinal distribution, richness and composition of bird assemblages in a mountainous region in Southern Nayarit, Mexico].

PubMed

Jaime-Escalante, Nidia Gissell; Figueroa-Esquivel, Elsa Margarita; Villaseñor Gómez, José Fernando; Jacobo-Sapien, Edwin Alberto; Puebla-Olivares, Fernando

2016-12-01

Elevation gradient studies have strengthened the evaluation of changes in richness and composition of bird assemblages. They also provide information on environmental variables that determine bird distribution, and the variables that define their population structure. Our aim was to describe their variation through an elevational cline in Southern Nayarit, Mexico. To analyze the behavior of richness across the gradient, we gathered information through point counts in nine elevational intervals (300 m from each other) from sea level to 2 700 m of elevation. With a standardized sampling effort, we produced rarefaction curves and analyzed changes in species composition by hierarchical classification using the TWINSPAN technique. In order to identify variables associated with richness changes, we examined the effect of precipitation and habitat structure via regression trees. An analysis of nonmetric multidimensional scaling (NMDS) was implemented with the purpose to determine if the changes in composition correspond to changes in vegetation types. Species richness varied significantly across the gradient: high in the lower parts of the gradient, reached its peak in the middle, and decreased monotonically with elevation. Species responded to changes in the cline and were grouped in three elevational zones. Analyses suggest that changes in richness and species composition are influenced by vegetation, its structure and precipitation regime, as well as various aspects related to habitat features and disturbance. These aspects should be taken into account in order to design appropriate strategies for the conservation of the birds of Nayarit.

Development and application of a pollen-based paleohydrologic reconstruction from the lower Roanoke River Basin, North Carolina, USA

USGS Publications Warehouse

Willard, D.; Bernhardt, C.; Brown, R.; Landacre, B.; Townsend, P.

2011-01-01

We used pollen assemblages to reconstruct late-Holocene paleohydrologic patterns in floodplain deposits from the lower Roanoke River basin (North Carolina, southeastern USA). Using 120 surface samples from 38 transects, we documented statistical relationships between pollen assemblages, vegetation, and landforms. Backswamp pollen assemblages (long hydroperiods) are dominated by Nyssa (tupelo) and Taxodium (cypress) and have high pollen concentrations. Sediments from elevated levees and seasonally flooded forests (shorter hydroperiods) are characterized by dominant Pinus (pine) pollen, variable abundance of hardwood taxa, and low pollen concentrations. We apply the calibration data set to interpret past vegetation and paleohydrology. Pollen from a radiocarbon-dated sediment core collected in a tupelo-cypress backswamp indicates centennial-scale fluctuations in forest composition during the last 2400 years. Backswamp vegetation has occupied the site since land clearance began ~300 years ago. Recent dam emplacement affected sedimentation rates, but vegetation changes are small compared with those caused by pre-Colonial climate variability. The occurrence of wetter conditions from ~2200 to 1800 cal. yr BP, ~1100 to 750 cal. yr BP, and ~400 to 250 cal. yr BP may indicate changes in cyclonic circulation patterns related to shifts in the position of the Bermuda High and jet stream.

Nonlinear Distribution Pattern of Hibernating Bats in Caves along an Elevational Gradient in Mountain (Carpathians, Southern Poland)

PubMed Central

Piksa, Krzysztof; Nowak, Jakub; Żmihorski, Michał; Bogdanowicz, Wiesław

2013-01-01

Background Thermal gradients along changes in elevation in mountainous environments are reflected by different biotas. Although there have been studies of elevation variation in bat assemblages in summer, winter changes in the same gradients remain unknown. Methodology/Principal Findings The objective of this study was to document changes in the species composition of bats hibernating in caves along a temperate elevational gradient. We studied 70 caves between from 300 m to 1,930 m altitude along a slope of the Carpathian Mountains in southern Poland. We recorded changes in bats, including species richness, abundance, altitudinal distribution and dominance during consecutive winters between 2003 and 2009. Similarity of dominance of faunal structure was assessed by using the Bray-Curtis similarity index. We used the generalised additive model and rarefaction to study the variation in species richness, and generalized additive mixed models to examine the effect of abiotic factors on the qualitative and quantitative structure of bat assemblages. During 351 surveys we recorded 13,856 hibernating bats from 15 species. Species richness peaked around mid-elevation (1,100–1,400 m a.s.l.) with richness declining at both higher and lower elevations. Based on the results of a cluster analysis, we could distinguish among four altitudinal zones that differed in species richness and dominance structure. Conclusions/Significance This is the first study documenting changes in species richness and variation of structure of bats hibernating in caves along an elevational gradient. The most surprising and key finding is the fact that changes in the structure of assemblages of hibernating bats along the altitudinal gradient occurred in jumps, forming zones similar to those observed in the vegetation zones. Moreover, species richness and dominance structure of assemblages of hibernating bats in the mountains depended not only on location above sea level, but also on local geomorphologic conditions which strongly affected the microclimate of the caves. PMID:23861850

Termites as bioindicators of habitat quality in the caatinga, Brazil: is there agreement between structural habitat variables and the sampled assemblages?

PubMed

Alves, W de F; Mota, A S; Lima, R A A de; Bellezoni, R; Vasconcellos, A

2011-01-01

The composition of termite assemblages was analyzed in three caatinga sites of the Estação Ecológica do Seridó, located in the municipality of Serra Negra do Norte, in the state of Rio Grande do Norte, Brazil. These sites have been subjected to selective logging, and cleared for pasture and farming. A standardized sampling protocol for termite assemblages (30h/person/site) was conducted between September 2007 and February 2009. At each site we measured environmental variables, such as soil pH and organic matter, necromass stock, vegetation height, stem diameter at ankle height (DAH) and the largest and the smallest crown width. Ten species of termites, belonging to eight genera and three families, were found at the three experimental sites. Four feeding groups were sampled: wood-feeders, soil-feeders, wood-soil interface feeders and leaf-feeders. The wood-feeders were dominant in number of species and number of encounters at all sites. In general, the sites were not significantly different in relation to the environmental variables measured. The same pattern was observed for termite assemblages, where no significant differences in species richness, relative abundance and taxonomic and functional composition were observed between the three sites. The agreement between composition of assemblages and environmental variables reinforces the potential of termites as biological indicators of habitat quality.

Arbuscular mycorrhizal fungal assemblages in biological crusts from a Neotropical savanna are not related to the dominant perennial Trachypogon.

PubMed

Hernández-Hernández, R M; Roldán, A; Caravaca, F; Rodriguez-Caballero, G; Torres, M P; Maestre, F T; Alguacil, M M

2017-01-01

Knowledge of the arbuscular mycorrhizal fungal assemblages in the Trachypogon savanna ecosystems is very important to a better understanding of the ecological processes mediated by this soil microbial group that affects multiple ecosystem functions. Considering the hypothesis that the biocrusts can be linked to vegetation through the arbuscular fungi mycelial network, the objectives proposed in this study were to determine (i) whether there are arbuscular mycorrhizal fungi (AMF) in the biocrusts (ii) whether arbuscular mycorrhizal fungal assemblages are linked to the Trachypogon patches, and (iii) whether the composition of the assemblages is related to soil properties affected by microbiological activity. The community structure of the AMF was investigated in three habitats: rhizospheric soil and roots of Trachypogon vestitus, biological soil crusts, and bare soil. The canonical correspondence analysis showed that two soil properties related to enzymatic activity (protease and β-glucosidase) significantly affected the community composition of the AMF. The biocrusts in the Venezuelan savanna are colonized by an AM fungal community linked to that of the bare soil and significantly different from that hosted by the roots of the surrounding T. vestitus, suggesting that assemblages of AMF in biocrusts might be related more closely to those of annual plant species appearing in favorable conditions. Copyright © 2016 Elsevier B.V. All rights reserved.

Pollinator-mediated assemblage processes in California wildflowers.

PubMed

Briscoe Runquist, R; Grossenbacher, D; Porter, S; Kay, K; Smith, J

2016-05-01

Community assembly is the result of multiple ecological and evolutionary forces that influence species coexistence. For flowering plants, pollinators are often essential for plant reproduction and establishment, and pollinator-mediated interactions may influence plant community composition. Here, we use null models and community phylogenetic analyses of co-occurrence patterns to determine the role of pollinator-mediated processes in structuring plant communities dominated by congeners. We surveyed three species-rich genera (Limnanthes, Mimulus and Clarkia) with centres of diversity in the Sierra Nevada of California. Each genus contains species that co-flower and share pollinators, and each has a robust phylogeny. Within each genus, we surveyed 44-48 communities at three spatial scales, measured floral and vegetative traits and tested for segregation or aggregation of: (i) species, (ii) floral traits (which are likely to be influenced by pollinators), and (iii) vegetative traits (which are likely affected by other environmental factors). We detected both aggregation and segregation of floral traits that were uncorrelated with vegetative trait patterns; we infer that pollinators have shaped the community assembly although the mechanisms may be varied (competition, facilitation, or filtering). We also found that mating system differences may play an important role in allowing species co-occurrence. Together, it appears that pollinators influence community assemblage in these three clades. © 2016 European Society For Evolutionary Biology. Journal of Evolutionary Biology © 2016 European Society For Evolutionary Biology.

Humid to arid to subhumid vegetation shift on Pilliga Sandstone, Ulungra Springs, New South Wales

NASA Astrophysics Data System (ADS)

Dodson, J. R.; Wright, R. V. S.

1989-09-01

The Pilliga Sandstone region of the northwest slope of New South Wales has a natural vegetation cover of sclerophyllous relatively closed to open forests with a largely heathy understorey, and a warm, subhumid and continental climate. Pollen analysis of spring-fed deposits gives a vegetation history extending from at least 30,000 yr B.P. to the late Holocene. Tree pollen became scarce after about 25,000 yr B.P. and an assemblage dominated by Chenopodiaceae, Liguliflorae, Tubuliflorae, and probably Poaceae developed. No similar assemblage is known from present pollen rain studies carried out in Australia. However, it clearly represents a treeless open shrub-steppe formation and therefore an arid or semiarid environment. The site thus provides evidence of an eastward late Pleistocene extension of the arid zone in Australia, and is the first full-glacial vegetation record between 20° and 35° latitude in Australia. The present vegetation cover did not become reestablished until the beginning of the Holocene, which raises questions about the form in which Pilliga Sandstone vegetation survived full-glacial conditions.

Surface pollen and its relationship to vegetation in the Zoige Basin, eastern Tibetan Plateau

NASA Astrophysics Data System (ADS)

Li, Furong; Zhao, Yan; Sun, Jinghui; Zhao, Wenwei; Guo, Xiaoli; Zhang, Ke

2011-09-01

We use a data set of 23 surface pollen samples from moss polsters in the Zoige Basin to explore the relationship between modern pollen assemblages and contemporary vegetation patterns. The surface pollen samples spanned four types of plant communities: Carex muliensis marsh, Stipa and Kobresia meadow, Carex-dominated forb meadow and Sibiraea angustata scrub. Principal-components analysis (PCA) was used to determine the relationships between modern pollen and vegetation and environmental variables. The results show that the pollen assemblages of surface moss samples generally reflect the features of the modern vegetation, basically similar in the vegetation types and the dominant genera; however, they don't show a very clear distinction between different communities. Our results also demonstrate that pollen representation of different families or genus varied. Some tree taxa, such as Pinus and Betula, and herb types, such as Artemisia are over-represented, while Asteraceae, Ranunculaceae and Cyperaceae are moderately represented, and Poaceae and Rosaceae are usually under-represented in our study region. PCA results indicate that the distribution of vegetation in the Zoige Basin is mainly controlled by precipitation and altitude.

Meter scale variation in shrub dominance and soil moisture structure Arctic arthropod communities

PubMed Central

Hansen, Oskar Liset Pryds; Bowden, Joseph J.; Treier, Urs A.; Normand, Signe; Høye, Toke

2016-01-01

The Arctic is warming at twice the rate of the rest of the world. This impacts Arctic species both directly, through increased temperatures, and indirectly, through structural changes in their habitats. Species are expected to exhibit idiosyncratic responses to structural change, which calls for detailed investigations at the species and community level. Here, we investigate how arthropod assemblages of spiders and beetles respond to variation in habitat structure at small spatial scales. We sampled transitions in shrub dominance and soil moisture between three different habitats (fen, dwarf shrub heath, and tall shrub tundra) at three different sites along a fjord gradient in southwest Greenland, using yellow pitfall cups. We identified 2,547 individuals belonging to 47 species. We used species richness estimation, indicator species analysis and latent variable modeling to examine differences in arthropod community structure in response to habitat variation at local (within site) and regional scales (between sites). We estimated species responses to the environment by fitting species-specific generalized linear models with environmental covariates. Species assemblages were segregated at the habitat and site level. Each habitat hosted significant indicator species, and species richness and diversity were significantly lower in fen habitats. Assemblage patterns were significantly linked to changes in soil moisture and vegetation height, as well as geographic location. We show that meter-scale variation among habitats affects arthropod community structure, supporting the notion that the Arctic tundra is a heterogeneous environment. To gain sufficient insight into temporal biodiversity change, we require studies of species distributions detailing species habitat preferences. PMID:27478709

Ecological correlates of the non-indigenous parasitoid assemblage associated with a Hawaiian endemic moth.

PubMed

Kaufman, Leyla V; Wright, Mark G

2011-08-01

Understanding what ecological factors might predispose indigenous habitats to invasion by invasive species is an important aspect of conservation and invasive species management, particularly when biological control is considered for suppression of the invasive species. This study seeks to identify ecological factors that might play a role in determining the structure of the parasitoid assemblage associated with caterpillars of the endemic Hawaiian moth Udea stellata (Crambidae). Parasitoids were reared from field-collected U. stellata larvae at 18 locations. Fourteen environmental variables were measured at each site. Two multivariate analyses, principal component analysis (PCA) and partial redundancy analysis (RDA), were used to analyze the parasitoid assemblage across a range of habitats varying in environmental characteristics. The PCA analysis showed that the occurrence of some species were highly correlated, and associated with less disturbed sites, whereas other species were associated with sites of medium and high levels of disturbance. The RDA analysis showed that only three of the measured environmental variables (U. stellata density, elevation, and level of habitat disturbance) significantly explained variability in the parasitoid assemblage among sites. There was greater parasitoid species richness associated with U. stellata larvae at higher elevation sites with a lower degree of habitat disturbance by exotic vegetation. The purposely introduced parasitoid species were associated with the non-target moth at sites located at higher elevations with low levels of disturbance. Multivariate analysis has the potential to provide valuable insights into the identification of important environmental factors that mediate parasitoid assemblage structure and level of parasitism on a particular target or non-target species, and therefore facilitate identification of suitable target habitats or susceptible non-target habitats.

Early growth interactions between a mangrove and an herbaceous salt marsh species are not affected by elevated CO2 or drought

USGS Publications Warehouse

Howard, Rebecca J.; Stagg, Camille L.; Utomo, Herry S.

2018-01-01

Increasing atmospheric carbon dioxide (CO2) concentrations are likely to influence future distributions of plants and plant community structure in many regions of the world through effects on photosynthetic rates. In recent decades the encroachment of woody mangrove species into herbaceous marshes has been documented along the U.S. northern Gulf of Mexico coast. These species shifts have been attributed primarily to rising sea levels and warming winter temperatures, but the role of elevated CO2 and water availability may become more prominent drivers of species interactions under future climate conditions. Drought has been implicated as a major factor contributing to salt marsh vegetation dieback in this region. In this greenhouse study we examined the effects of CO2 concentration (∼380 ppm, ∼700 ppm) and water regime (drought, saturated, flooded) on early growth of Avicennia germinans, a C3 mangrove species, and Spartina alterniflora, a C4 grass. Plants were grown in monocultures and in a mixed-species assemblage. We found that neither species responded to elevated CO2 over the 10-month duration of the experiment, and there were few interactions between experimental factors. Two effects of water regime were documented: lower A. germinanspneumatophore biomass under drought conditions, and lower belowground biomass under flooded conditions regardless of planting assemblage. Evidence of interspecific interactions was noted. Competition for aboveground resources (e.g., light) was indicated by lower S. alterniflora stem biomass in mixed-species assemblage compared to biomass in S. alterniflora monocultures. Pneumatophore biomass of A. germinans was reduced when grown in monoculture compared to the mixed-species assemblage, indicating competition for belowground resources. These interactions provide insight into how these species may respond following major disturbance events that lead to vegetation dieback. Site variation in propagule availability and physico-chemical conditions will determine plant community composition and structure following such disturbances when these two species co-occur.

Cryptogamic community structure as a bioindicator of soil condition along a pollution gradient.

PubMed

Rola, Kaja; Osyczka, Piotr

2014-09-01

This study aims to determine changes in the structure of cryptogamic vegetation of poor psammophilous grassland along a pollution gradient near a zinc smelter to evaluate the potential of species assemblages as bioindicators of soil condition. Lichens and bryophytes were examined in study plots along six transects in four distance zones, and the physicochemical properties of corresponding soil samples were analysed. Four different responses of species to substrate contamination were identified, with a distinct group of species resistant to and favoured by metal contamination. Although species richness decreases as one approaches the smelter, the gradual replacement of certain sensitive species by resistant ones was observed along the pollution gradient. The results enabled us to develop a useful tool to diagnose strongly polluted sites. Two different cryptogamic assemblages of well-recognised key species characteristic for strongly polluted and lightly polluted sites were distinguished. We conclude that cryptogamic community structure clearly corresponds to the degree of soil contamination, thus demonstrating high bioindicative value. The study confirmed the high relevance of the community approach in metal pollution biomonitoring.

Effects of a Long-Term Disturbance on Arthropods and Vegetation in Subalpine Wetlands: Manifestations of Pack Stock Grazing in Early versus Mid-Season

PubMed Central

Holmquist, Jeffrey G.; Schmidt-Gengenbach, Jutta; Haultain, Sylvia A.

2013-01-01

Conclusions regarding disturbance effects in high elevation or high latitude ecosystems based solely on infrequent, long-term sampling may be misleading, because the long winters may erase severe, short-term impacts at the height of the abbreviated growing season. We separated a) long-term effects of pack stock grazing, manifested in early season prior to stock arrival, from b) additional pack stock grazing effects that might become apparent during annual stock grazing, by use of paired grazed and control wet meadows that we sampled at the beginning and end of subalpine growing seasons. Control meadows had been closed to grazing for at least two decades, and meadow pairs were distributed across Sequoia National Park, California, USA. The study was thus effectively a landscape-scale, long-term manipulation of wetland grazing. We sampled arthropods at these remote sites and collected data on associated vegetation structure. Litter cover and depth, percent bare ground, and soil strength had negative responses to grazing. In contrast, fauna showed little response to grazing, and there were overall negative effects for only three arthropod families. Mid-season and long-term results were generally congruent, and the only indications of lower faunal diversity on mid-season grazed wetlands were trends of lower abundance across morphospecies and lower diversity for canopy fauna across assemblage metrics. Treatment x Season interactions almost absent. Thus impacts on vegetation structure only minimally cascaded into the arthropod assemblage and were not greatly intensified during the annual growing season. Differences between years, which were likely a response to divergent snowfall patterns, were more important than differences between early and mid-season. Reliance on either vegetation or faunal metrics exclusively would have yielded different conclusions; using both flora and fauna served to provide a more integrative view of ecosystem response. PMID:23308297

Effects of a long-term disturbance on arthropods and vegetation in subalpine wetlands: manifestations of pack stock grazing in early versus mid-season.

PubMed

Holmquist, Jeffrey G; Schmidt-Gengenbach, Jutta; Haultain, Sylvia A

2013-01-01

Conclusions regarding disturbance effects in high elevation or high latitude ecosystems based solely on infrequent, long-term sampling may be misleading, because the long winters may erase severe, short-term impacts at the height of the abbreviated growing season. We separated a) long-term effects of pack stock grazing, manifested in early season prior to stock arrival, from b) additional pack stock grazing effects that might become apparent during annual stock grazing, by use of paired grazed and control wet meadows that we sampled at the beginning and end of subalpine growing seasons. Control meadows had been closed to grazing for at least two decades, and meadow pairs were distributed across Sequoia National Park, California, USA. The study was thus effectively a landscape-scale, long-term manipulation of wetland grazing. We sampled arthropods at these remote sites and collected data on associated vegetation structure. Litter cover and depth, percent bare ground, and soil strength had negative responses to grazing. In contrast, fauna showed little response to grazing, and there were overall negative effects for only three arthropod families. Mid-season and long-term results were generally congruent, and the only indications of lower faunal diversity on mid-season grazed wetlands were trends of lower abundance across morphospecies and lower diversity for canopy fauna across assemblage metrics. Treatment x Season interactions almost absent. Thus impacts on vegetation structure only minimally cascaded into the arthropod assemblage and were not greatly intensified during the annual growing season. Differences between years, which were likely a response to divergent snowfall patterns, were more important than differences between early and mid-season. Reliance on either vegetation or faunal metrics exclusively would have yielded different conclusions; using both flora and fauna served to provide a more integrative view of ecosystem response.

Bioindicator beetles and plants in desertified and eroded lands in Turkey

USDA-ARS?s Scientific Manuscript database

Xerophilous vegetation with characteristic insect assemblages is described in main agricultural regions and native landscapes of Turkey. Long term, intensive investigations documented vast biotic degradation of soil and vegetation (commonly referred to as desertification) by an overgrazing, construc...

Early Pliocene vegetation distribution in Europe

NASA Astrophysics Data System (ADS)

Popescu, S.; Warny, S.; Suc, J.

2010-12-01

The Early Pliocene corresponds to a global warm climate documented by marine & terrestrial records. Reconstruction of climatic parameters, based on terrestrial proxies, indicate at European mid-latitudes a MAT higher of about 1-5°C than today and MAP higher of about 400-1000 mm. This global warm situation was interrupted between 4.7 - 4.5 Ma by a cooling event related to small fluctuations of the Antarctic ice-sheet that modify the floristic assemblages. according to pollen recors, the Northern Mediterranean area is characterized by dominance of arboreal pollen, suggesting a dense forest cover, on contrary to the Southern Mediterranean where herbs were prevalent, signifying a widespread development of open vegetation during the early Pliocene. Such a contrast in landscape between the North and the South of the Mediterranean is to be related to the latitudinal gradient in humidity. In the North Mediterranean area, the vegetation organization was also closely linked to the relief. Coastal plains were inhabited by Taxodiaceae swamps replaced in some places by marshes. With respect to the geographic position, several plant ecosystems can distinguished: (1) salt marshes, along the Atlantic coastline (zone A); (2) marshes mostly made of Cyperaceae evidenced on the Mediterranean coastline. Such juxtaposed assemblages resemble the modern vegetation of the Mississippi Delta and Florida. Peculiar vegetation assemblages characterize the Mediterranean coastal plains. In the southeastern Mediterranean region (Zone B), the open vegetation was composed by herbs including subdesertic elements. Mediterranean xerophytes are only numerically represented in the area of Tarragona and Sicily, their assemblage resemble the modern thermo-mediterranean formation. Close to the mountains (Zone C) vegetation is organized according to an altitudinal gradient. The low altitude vegetation was composed by Taxodiaceae (Sequoia) while Cathaya and Cedrus dominated the mid-altitude belt. Abies and Picea developed in higher altitude. The Eastern Europe vegetation (zone D) was characterized by coexistent warm-temperate forests and open ecosystems. Some megathermic and mega-mesothermic elements were persisting. Mediterranean xerophytes were indentified in few amounts in the Eastern Europe, showing a slight increase according to the latitudinal gradient. Site 380A (Black Sea) provides relatively high percentages of Artemisia growing in Anatolia, which increased again during the cooler periods. Anatolia probably represents the origin of the repeated steppe expansions which occurred in Europe at each glacial phase. Finally, the Nile region (zone E) documents the presence of savannah (composed mainly by Poaceae and Cyperaceae) including some subdesertic taxa. Nile riparian forests preserved several tropical-subtropical elements.

Emergence patterns of novel vegetation assemblages over the past 15,000 years in Europe

NASA Astrophysics Data System (ADS)

Finsinger, Walter; Brewer, Simon; Giesecke, Thomas; Leydet, Michelle

2016-04-01

Plant communities are not stable over time and the development of so-called novel ecosystems, i.e. ecosystems that differ in composition from present and historical ecosystems, is inevitable. Ecological novelty may arise due to rapid climate changes, the introduction of exotic species, and human land-use changes. However, little is known as to when and at what velocity novel ecosystems emerged in the past. Here we use pollen sequences from the European Pollen Database (EPD) to explore the spatial and temporal patterns of emergence of novel plant communities over the past ca. 15,000 years. The rationale behind this analysis is that just as modern communities are expected to differ fundamentally to those occurring in the future, this difference also occurred between past communities and their contingent future composition. Our aims are to explore the rate at which these past novel communities arose, and how these rates varied over time. Further, as land-cover composition has been significantly altered in comparison to the past, we explore the extent to which human-caused landscape changes accelerated the emergence of novel vegetation assemblages. For each pollen record we collated pollen counts into 30 consecutive 500-year wide age bins centred on full 500-year intervals between 0 and 15,000 cal BP. We iteratively considered each age bin as describing a baseline condition in the past and searched for each assemblage in the baseline age bins the closest analogues among all assemblages in each future age bin (hereafter 'target age bin'). To identify assemblages lacking a close analogue in target age bins we determined for each reference age bin a critical dissimilarity score as the low quantile of the pair-wise dissimilarities observed. The rate of emergence of novel communities was estimated as the percentage of assemblages lacking a close analogue in target age bins per 500 years. Rates of emergence of novel assemblages varied through time and highest rates occurred during periods of high within-site rate of vegetation change. For example, >50% of Younger Dryas steppe assemblages lost a close analogue after 500-1000 years due to the rapid range shifts and the disappearance of steppe environments. Within the Holocene, highest rates occurred in the early Holocene. Highest displacement velocities (km/year) at that time support the notion that rapid range shifts can lead to novel communities. Rates of emergence were lowest between 7000 and 3000 cal yr BP and increased thereafter. During the past ca. 1500 years rates of emergence were up to 3 times higher than mid-Holocene rates and significantly lower than late-glacial and early-Holocene rates. Because during the past 1500 years novel assemblages mostly emerged in Southern and Central Europe, a region mostly impacted by anthropogenic activities, we interpret these results as the consequence of anthropogenic land-cover change that created novel landscapes. The proportion of assemblages having a close analogue in modern vegetation is higher for past communities located at high latitudes, indicating that communities at higher latitudes showed a longer persistence than communities in Southern and Central Europe.

Fish assemblages, connectivity, and habitat rehabilitation in a diked Great Lakes coastal wetland complex

USGS Publications Warehouse

Kowalski, Kurt P.; Wiley, Michael J.; Wilcox, Douglas A.

2014-01-01

Fish and plant assemblages in the highly modified Crane Creek coastal wetland complex of Lake Erie were sampled to characterize their spatial and seasonal patterns and to examine the implications of the hydrologic connection of diked wetland units to Lake Erie. Fyke netting captured 52 species and an abundance of fish in the Lake Erie–connected wetlands, but fewer than half of those species and much lower numbers and total masses of fish were captured in diked wetland units. Although all wetland units were immediately adjacent to Lake Erie, there were also pronounced differences in water quality and wetland vegetation between the hydrologically isolated and lake-connected wetlands. Large seasonal variations in fish assemblage composition and biomass were observed in connected wetland units but not in disconnected units. Reestablishment of hydrologic connectivity in diked wetland units would allow coastal Lake Erie fish to use these vegetated habitats seasonally, although connectivity does appear to pose some risks, such as the expansion of invasive plants and localized reductions in water quality. Periodic isolation and drawdown of the diked units could still be used to mimic intermediate levels of disturbance and manage invasive wetland vegetation.

Reconstructing vegetation response to altered hydrology and its use for restoration, Arthur R. Marshall Loxahatchee National Wildlife Refuge, Florida

USGS Publications Warehouse

Bernhardt, Christopher E.; Brandt, Laura A.; Landacre, Bryan D.; Marot, Marci E.; Willard, Debra A.

2013-01-01

We present reconstructed hydrologic and vegetation trends of the last three centuries across the Arthur R. Marshall Loxahatchee National Wildlife Refuge, Florida in order to understand the effects of 20th century water management. We analyzed pollen assemblages from cores at marsh sites along three transects to document vegetation and infer hydroperiod and water depth both before and after human alteration of Everglades hydrology. In the northern and central part of the Refuge, late Holocene water levels were higher and hydroperiods longer than the last 100 years. Post-1950 was a time of several different water management strategies. Pollen assemblages indicate drier conditions post-1950 in the northern and central parts of the Refuge, whereas sites in the southern Refuge are wetter and vegetation turnover is higher. Throughout the Refuge, Sagittaria pollen declines with the onset of water management, and may indicate a loss of greater variation in hydroperiods across years and water depths between seasons. Paleoecological evidence provides clear estimates of the vegetation response to hydrologic change under specific hydrologic regimes.

A late Holocene pollen record from proglacial Oblong Tarn, Mount Kenya.

PubMed

Courtney Mustaphi, Colin J; Gajewski, Konrad; Marchant, Rob; Rosqvist, Gunhild

2017-01-01

High-elevation ecosystems, such as those on Mount Kenya are undergoing significant changes, with accelerated glacial ice losses over the twentieth century creating new space for alpine plants to establish. These ecosystems respond rapidly to climatic variability and within decades of glacial retreat, Afroalpine pioneering taxa stabilize barren land and facilitate soil development, promoting complex patches of alpine vegetation. Periglacial lake sediment records can be used to examine centennial and millennial scale variations in alpine and montane vegetation compositions. Here we present a 5300-year composite pollen record from an alpine tarn (4370 m asl) in the Hausberg Valley of Mount Kenya. Overall, the record shows little apparent variation in the pollen assemblage through time with abundant montane forest taxa derived and transported from mid elevations, notably high abundances of aerophilous Podocarpus pollen. Afroalpine taxa included Alchemilla, Helichrysum and Dendrosenecio-type, reflecting local vegetation cover. Pollen from the ericaceous zone was present throughout the record and Poaceae percentages were high, similar to other high elevation pollen records from eastern Africa. The Oblong Tarn record pollen assemblage composition and abundances of Podocarpus and Poaceae since the late Holocene (~4000 cal yr BP-present) are similar to pollen records from mid-to-high elevation sites of nearby high mountains such as Mount Elgon and Kilimanjaro. These results suggest a significant amount of uphill pollen transport with only minor apparent variation in local taxa. Slight decreasing trends in alpine and ericaceous taxonomic groups show a long-term response to global late Holocene cooling and a step decrease in rate of change estimated from the pollen assemblages at 3100 cal yr BP in response to regional hydroclimatic variability. Changes in the principal component axis scores of the pollen assemblage were coherent with an independent mid-elevation temperature reconstruction, which supported the strong influence of uphill pollen transport from montane forest vegetation and association between temperatures and montane vegetation dynamics. Pollen accumulation rates showed some variability related to minerogenic sediment input to the lake. The Oblong Tarn pollen record provides an indication of long term vegetation change atop Mount Kenya showing some decreases in local alpine and ericaceous taxa from 5300-3100 cal yr BP and minor centennial-scale variability of montane taxa from mid elevation forests. The record highlights potentials, challenges and opportunities for the use of proglacial lacustrine sediment to examine vegetation change on prominent mountain massifs.

Disentangling the role of management, vegetation structure, and plant quality for Orthoptera in lowland meadows.

PubMed

Schirmel, Jens; Gerlach, Rebekka; Buhk, Constanze

2017-08-17

Seminatural grasslands provide habitats for various species and are important for biodiversity conservation. The understanding of the diverse responses of species and traits to different grassland management methods is therefore urgently needed. We disentangled the role of grassland management (fertilization and irrigation), vegetation structure (biomass, sward height) and plant quality (protein and fiber content) for Orthoptera communities in lowland hay meadows in Germany. We found vegetation structure to be the most important environmental category in explaining community structure of Orthoptera (species richness, total individuals, functional diversity and species composition). Intensively used meadows (fertilized, irrigated, high plant biomass) were characterized by assemblages with few species, low functional diversity, and low conservation value. Thereby, the relatively moderate fertilizer inputs in our study system of up to ∼75 kg N/ha/year reduced functional diversity of Orthoptera, while this negative effect of fertilization was not detectable when solely considering taxonomic aspects. We found strong support for a prominent role of plant quality in shaping Orthoptera communities and especially the trait composition. Our findings demonstrate the usefulness of considering both taxonomic and functional components (functional diversity) in biodiversity research and we suggest a stronger involvement of plant quality measures in Orthoptera studies. © 2017 Institute of Zoology, Chinese Academy of Sciences.

Correspondence of terrestrial and marine paleoclimates, SW Florida, during Mid-Pliocene periods of global warmth

DOE Office of Scientific and Technical Information (OSTI.GOV)

Willard, D.A.; Cronin, T.M.; Litwin, R.J.

Pollen and ostracode samples from shallow-marine strata of the Pinecrest Beds near Sarasota, FL were studied to compare terrestrial and marine paleoclimate records during periods of middle Pliocene global warmth. Pollen assemblages from strata deposited during sea-level highstands from about 3.5--3.0 Ma are dominated by Pinus pollen with subdominant Ouercus and common taxodiaceous pollen, which increases markedly in abundance near about 3.0 Ma. Comparison with modern, shallow-marine pollen assemblages from the east coast of the United States indicates that the 3.5--3.0 Ma vegetation was, overall, similar to vegetation from the southern third Florida. However, near 3.0 Ma, pollen assemblages becomemore » less similar to modern assemblages due to higher percentages of taxodiaceous pollen and lower percentages of herbaceous pollen. Such changes are consistent with warmer climates and, possibly, moister soil conditions. Marine ostracodes also show progressively higher percentages of thermophilic (subtropical/tropical) taxa and decreasing percentages of cryophilic (temperature) taxa between 3.5--3.0 Ma. From about 2.5--2.0 Ma, ostracode assemblages recorded open-bay, sometimes brackish environments similar to those in subtropical eastern North America today. The Pinecrest paleoclimate record shows (1) that during two periods of global warmth and high sea level, subtropical terrestrial and marine climates were not substantially warmer than today; (2) ocean and atmosphere temperatures probably were about the same as today, perhaps slightly higher during peak warmth near 3.0 Ma; (3) changes in pollen assemblages appear to lag behind changes in ostracode assemblages; (4) progressively warmer local climates 3.5--3.0 Ma probably record an increasing influence of warm Gulf Stream water as the Central American Isthmus closed.« less

DEVELOPMENT OF AN INDEX OF ALIEN SPECIES INVASIVENESS: AN AID TO ASSESSING RIPARIAN VEGETATION CONDITION

EPA Science Inventory

Many riparian areas are invaded by alien plant species that negatively affect native species composition, community dynamics and ecosystem properties. We sampled vegetation along reaches of 31 low order streams in eastern Oregon, and characterized species assemblages at patch an...

Taphonomic bias in pollen and spore record: a review

DOE Office of Scientific and Technical Information (OSTI.GOV)

Fisk, L.H.

The high dispersibility and ease of pollen and spore transport have led researchers to conclude erroneously that fossil pollen and spore floras are relatively complete and record unbiased representations of the regional vegetation extant at the time of sediment deposition. That such conclusions are unjustified is obvious when the authors remember that polynomorphs are merely organic sedimentary particles and undergo hydraulic sorting not unlike clastic sedimentary particles. Prior to deposition in the fossil record, pollen and spores can be hydraulically sorted by size, shape, and weight, subtly biasing relative frequencies in fossil assemblages. Sorting during transport results in palynofloras whosemore » composition is environmentally dependent. Therefore, depositional environment is an important consideration to make correct inferences on the source vegetation. Sediment particle size of original rock samples may contain important information on the probability of a taphonomically biased pollen and spore assemblage. In addition, a reasonable test of hydraulic sorting is the distribution of pollen grain sizes and shapes in each assemblage. Any assemblage containing a wide spectrum of grain sizes and shapes has obviously not undergone significant sorting. If unrecognized, taphonomic bias can lead to paleoecologic, paleoclimatic, and even biostratigraphic misinterpretations.« less

Modern pollen assemblages and vegetational history of the moraines of the Klutlan Glacier and its surroundings, Yukon Territory, Canada*1

NASA Astrophysics Data System (ADS)

Birks, H. J. B.

1980-07-01

Modern pollen assemblages have been studied from surficial lake muds and moss polsters collected from five vegetated ice-cored moraines of the Klutlan Glacier. The youngest vegetated moraine (K-II) is characterized by high pollen values for Salix and Hedysarum, K-III by high Salix and Shepherdia canadensis and low Hedysarum and Picea, K-IV by high Betula, Salix, and Shepherdia, and K-V and the Harris Creek moraine (HCM) by high Picea. Variations are summarized by canonical variates analysis. A percentage pollen diagram from Gull Lake on the upland east of the glacier records vegetational development since the deposition of the White River volcanic ash 1220 14C yr ago. An initial species-rich treeless vegetation was replaced by birch-alder-willow shrub-tundra, and this by open Picea glauca forest similar to present vegetation around the lake. Sites on HCM show two basic stratigraphies. Triangle Lake reflects vegetational succession from Salix-Shepherdia canadensis scrub similar to that on K-III today, through open Picea woodland of K-IV type, to closed Picea forests of K-V and HCM. Heart Lake and Cotton Pond reflect vegetational development following melting of ice underlying the spruce forests of HCM. These two types are summarized by positioning the fossil spectra on the first two canonical variate axes of the modern surface spectra.

Detecting changes resulting from human pressure in a naturally quick-changing and heterogeneous environment: Spatial and temporal scales of variability in coastal lagoons

NASA Astrophysics Data System (ADS)

Pérez-Ruzafa, A.; Marcos, C.; Pérez-Ruzafa, I. M.; Barcala, E.; Hegazi, M. I.; Quispe, J.

2007-10-01

To detect changes in ecosystems due to human impact, experimental designs must include replicates at the appropriate scale to avoid pseudoreplication. Although coastal lagoons, with their highly variable environmental factors and biological assemblages, are relatively well-studied systems, very little is known about their natural scales of variation. In this study, we investigate the spatio-temporal scales of variability in the Mar Menor coastal lagoon (SE Spain) using structured hierarchical sampling designs, mixed and permutational multi-variate analyses of variance, and ordination multi-variate analyses applied to hydrographical parameters, nutrients, chlorophyll a and ichthyoplankton in the water column, and to macrophyte and fish benthic assemblages. Lagoon processes in the Mar Menor show heterogeneous patterns at different temporal and spatial scales. The water column characteristics (including nutrient concentration) showed small-scale spatio-temporal variability, from 10 0 to 10 1 km and from fortnightly to seasonally. Biological features (chlorophyll a concentration and ichthyoplankton assemblage descriptors) showed monthly changes and spatial patterns at the scale of 10 0 (chlorophyll a) - 10 1 km (ichthyoplankton). Benthic assemblages (macrophytes and fishes) showed significant differences between types of substrates in the same locality and between localities, according to horizontal gradients related with confinement in the lagoon, at the scale of 10 0-10 1 km. The vertical zonation of macrophyte assemblages (at scales of 10 1-10 2 cm) overlaps changes in substrata and horizontal gradients. Seasonal patterns in vegetation biomass were not significant, but the significant interaction between Locality and Season indicated that the seasons of maximum and minimum biomass depend on local environmental conditions. Benthic fish assemblages showed no significant patterns at the monthly scale but did show seasonal patterns.

Vegetation of loess bluff ravines in the Jackson Purchase Region of Kentucky

Treesearch

William S. Bryant

1993-01-01

Forest vegetation of some loess bluff ravines in the Jackson Purchase Region of Kentucky was sampled. A total of 27 tree species comprised the mixed mesophytic association with Acer saccharum, Fagus grandifolia and Liquidambar styraciflua as the dominants. This assemblage of species agrees with that reported for...

Pollen spectrum, a cornerstone for tracing the evolution of the eastern Central Asian desert

NASA Astrophysics Data System (ADS)

Lu, Kai-Qing; Xie, Gan; Li, Min; Li, Jin-Feng; Trivedi, Anjali; Ferguson, David K.; Yao, Yi-Feng; Wang, Yu-Fei

2018-04-01

The temperate desert in arid Central Asia (ACA) has acted as a thoroughfare for the ancient Silk Road and today's Belt and Road, linking economic and cultural exchanges between East and West. The interaction between human sustainable development and the dynamic change in the desert ecosystem in this region is an area of concern for governments and scientific communities. Nevertheless, the lack of a pollen spectrum of the dominant taxa within the temperate desert vegetation and a corresponding relation between pollen assemblages and specific desert vegetation types is an obstacle to further understanding the formation and maintenance of this desert ecosystem. In this work, we link pollen assemblages to specific desert vegetation types with a new pollen spectrum with specific pollen grains, specific plant taxa and related habitats, providing a solid foundation for further tracing the evolution of the desert ecosystem in eastern arid Central Asia.

Zonation and structuring factors of meiofauna communities in a tropical seagrass bed (Gazi Bay, Kenya)

NASA Astrophysics Data System (ADS)

De Troch, Marleen; Gurdebeke, Shirley; Fiers, Frank; Vincx, Magda

2001-02-01

This study deals with the relation between tropical meiofauna and environmental variables by comparing the 'benthic' (i.e. in the bare sediment adjacent to seagrass plants) and the 'epiphytic' (i.e. in samples including seagrass plants) meiofauna associated with five seagrass species from the high intertidal to the high subtidal zone in Gazi Bay (Kenya). Ordination and variance analysis revealed three distinct 'benthic' and two 'epiphytic' meiofauna assemblages. These assemblages corresponded entirely with those identified for the seagrass species: a high intertidal pioneer association ( Halophila ovalis/ Halodule wrightii), an intertidal climax assemblage ( Thalassia hemprichii) and a high subtidal pioneer association ( Halophila stipulacea/ Syringodium isoetifolium). These data support the hypothesis that meiofaunal communities correspond to the characteristic zonation of the seagrass vegetation in Gazi Bay. In beds of the pioneer seagrass species, the close relationship between sediment characteristics and both 'benthic' and 'epiphytic' meiofauna communities suggests that these pioneer communities were mainly driven by physical factors. The 'benthic' communities adjacent to the climax seagrass species T. hemprichii were more structured by biogenic factors, e.g. % TOM, chlorophyll a and c, fucoxanthin, habitat complexity and growth form of the seagrass species. For its associated 'epiphytic' meiofauna the latter conclusion was even more striking. These data corroborate the importance of physical factors in disturbed environments (intertidal zone, near pioneer seagrasses) and of biotic factors in more stable conditions (subtidal zone, near climax seagrasses).

Reservoir floodplains support distinct fish assemblages

USGS Publications Warehouse

Miranda, Leandro E.; Wigen, S. L.; Dagel, Jonah D.

2014-01-01

Reservoirs constructed on floodplain rivers are unique because the upper reaches of the impoundment may include extensive floodplain environments. Moreover, reservoirs that experience large periodic water level fluctuations as part of their operational objectives seasonally inundate and dewater floodplains in their upper reaches, partly mimicking natural inundations of river floodplains. In four flood control reservoirs in Mississippi, USA, we explored the dynamics of connectivity between reservoirs and adjacent floodplains and the characteristics of fish assemblages that develop in reservoir floodplains relative to those that develop in reservoir bays. Although fish species richness in floodplains and bays were similar, species composition differed. Floodplains emphasized fish species largely associated with backwater shallow environments, often resistant to harsh environmental conditions. Conversely, dominant species in bays represented mainly generalists that benefit from the continuous connectivity between the bay and the main reservoir. Floodplains in the study reservoirs provided desirable vegetated habitats at lower water level elevations, earlier in the year, and more frequently than in bays. Inundating dense vegetation in bays requires raising reservoir water levels above the levels required to reach floodplains. Therefore, aside from promoting distinct fish assemblages within reservoirs and helping promote diversity in regulated rivers, reservoir floodplains are valued because they can provide suitable vegetated habitats for fish species at elevations below the normal pool, precluding the need to annually flood upland vegetation that would inevitably be impaired by regular flooding. Published 2013. This article is a U.S. Government work and is in the public domain in the USA.

Spatiotemporal ecohydrological patterns and processes in temperate uplands: linking field observations and model results

NASA Astrophysics Data System (ADS)

Dodd, N. H.; Baird, A. J.; Wainwright, J.; Dunn, S. M.

2011-12-01

There are obvious surface expressions - in terms of vegetation patterning - of ecohydrological feedbacks on dryland and peatland hillslopes. Much less is known about subsurface ecohydrological patterns, and whether or not they 'map onto' surface patterns. Likewise, few attempts have been made to investigate how such ecohydrological patterns affect whole-hillslope hydrological behaviour or how widespread they are in non-dryland and non-peatland hillslopes. In this study we investigate surface and near- surface patterning in temperate hillslopes, which to date have been the focus of much hydrological work but little ecohydrological work. In particular, we consider the extent to which the direct and the indirect effects of past and present plant assemblages on local and whole-hillslope soil moisture conditions may contribute to patterning. We have conducted a field study of two temperate upland hillslopes in Northern Scotland, UK, on one of which human intervention plays a major part in shaping the landscape. Repeat measurements have been made of near- surface soil-moisture content, taken at lag distances of 0.25 m to 20 m, under different antecedent hydrological conditions together with characterisation of plant assemblages at the same points through both ground-based vegetation surveys of 1 m × 1 m plots and kite aerial photography (KAP) of > 20 m2 plots. Results from this have indicated that changes in ecohydrological patterns can occur over small spatial scales (< 1 m2) and short time scales (< 1 day). Comparison of values of near-surface soil moisture content with topographic wetness indices, calculated using 1 -m resolution topographic data collected in the field, has highlighted that topography does not explain all of the spatial variation in soil moisture content at this scale. KAP images allowed detection of vegetation patterns not obvious from the ground. Comparison of KAP images and historic aerial photographs has highlighted the persistence of vegetation patterns over time at both sites, and that the current structure of the landscape is clearly related to current and past vegetation management practices. Evidence of sustained patterning under relatively steady environmental conditions has prompted us to consider how internal system dynamics such as competition and facilitation between different plant assemblages, and persistence of ecological memory at a range of timescales may lead to a range of ecohydrological behaviours at the scale of whole hillslopes. To help conceptualize ways in which patterning may arise, we have built a two-dimensional cellular automata-type model in which local interactions between biotic and abiotic components have the potential to lead to emergence of larger-scale patterns within the model landscape. Results from the field study have been used to gauge how well temperate hillslope ecohydrological dynamics are represented in our model, and to check that local neighbourhood patterns in the model outputs resemble real-world patterning. Key words: temperate upland ecohydrology, plant assemblage dynamics, ecological memory, kite aerial photography, cellular automata.

Genotyping of Giardia duodenalis in vegetables cultivated with organic and chemical fertilizer from street markets and community vegetable gardens in a region of Southern Brazil.

PubMed

Rafael, Katyelle; Marchioro, Ariella A; Colli, Cristiane M; Tiyo, Bruna T; Evangelista, Fernanda F; Bezagio, Renata C; Falavigna-Guilherme, Ana L

2017-12-01

In order to investigate the occurrence of Giardia duodenalis and its genotypes in vegetables that are consumed raw, we analyzed samples cultivated with organic or chemical fertilizer, sold in street markets and from community vegetable gardens in an urban area located in Southern Brazil. We analyzed 130 samples of vegetables such as crisp lettuce, regular lettuce, kale, chicory and rocket, from street markets, and 130 from community gardens. From each sample, 50 g were washed in Tween 80 solution (1%) and the solution obtained was filtered through a cellulose acetate membrane. The retained material was used for DNA extraction with the commercial kit Purelink®. GDH gene was amplified by semi-nested PCR using the GDHeF, GDHiR and GDHiF primers. Positive samples were genotyped using the PCR-RFLP technique with the restriction enzyme NlaIV. We obtained 7.3% (19/260) positive samples for G. duodenalis, both from street markets (10/130) and from community gardens (9/130), including organic and non-organic products. The assemblage AI was predominant, but assemblages B and E were also found. The molecular technique revealed genotypes with zoonotic potential, evidencing the importance of investigating commercialized vegetables that are consumed raw and establishing a more rigid quality control.

Land Use Influences Niche Size and the Assimilation of Resources by Benthic Macroinvertebrates in Tropical Headwater Streams

PubMed Central

Parreira de Castro, Diego Marcel; Reis de Carvalho, Débora; Pompeu, Paulo dos Santos; Moreira, Marcelo Zacharias; Nardoto, Gabriela Bielefeld; Callisto, Marcos

2016-01-01

It is well recognized that assemblage structure of stream macroinvertebrates changes with alterations in catchment or local land use. Our objective was to understand how the trophic ecology of benthic macroinvertebrate assemblages responds to land use changes in tropical streams. We used the isotope methodology to assess how energy flow and trophic relations among macroinvertebrates were affected in environments affected by different land uses (natural cover, pasture, sugar cane plantation). Macroinvertebrates were sampled and categorized into functional feeding groups, and available trophic resources were sampled and evaluated for the isotopic composition of 13C and 15N along streams located in the Cerrado (neotropical savanna). Streams altered by pasture or sugar cane had wider and more overlapped trophic niches, which corresponded to more generalist feeding habits. In contrast, trophic groups in streams with native vegetation had narrower trophic niches with smaller overlaps, suggesting greater specialization. Pasture sites had greater ranges of resources exploited, indicating higher trophic diversity than sites with natural cover and sugar cane plantation. We conclude that agricultural land uses appears to alter the food base and shift macroinvertebrate assemblages towards more generalist feeding behaviors and greater overlap of the trophic niches. PMID:26934113

Land Use Influences Niche Size and the Assimilation of Resources by Benthic Macroinvertebrates in Tropical Headwater Streams.

PubMed

Parreira de Castro, Diego Marcel; Reis de Carvalho, Débora; Pompeu, Paulo dos Santos; Moreira, Marcelo Zacharias; Nardoto, Gabriela Bielefeld; Callisto, Marcos

2016-01-01

It is well recognized that assemblage structure of stream macroinvertebrates changes with alterations in catchment or local land use. Our objective was to understand how the trophic ecology of benthic macroinvertebrate assemblages responds to land use changes in tropical streams. We used the isotope methodology to assess how energy flow and trophic relations among macroinvertebrates were affected in environments affected by different land uses (natural cover, pasture, sugar cane plantation). Macroinvertebrates were sampled and categorized into functional feeding groups, and available trophic resources were sampled and evaluated for the isotopic composition of 13C and 15N along streams located in the Cerrado (neotropical savanna). Streams altered by pasture or sugar cane had wider and more overlapped trophic niches, which corresponded to more generalist feeding habits. In contrast, trophic groups in streams with native vegetation had narrower trophic niches with smaller overlaps, suggesting greater specialization. Pasture sites had greater ranges of resources exploited, indicating higher trophic diversity than sites with natural cover and sugar cane plantation. We conclude that agricultural land uses appears to alter the food base and shift macroinvertebrate assemblages towards more generalist feeding behaviors and greater overlap of the trophic niches.

Drivers of Change in a 7300-Year Holocene Diatom Record from the Hemi-Boreal Region of Ontario, Canada

PubMed Central

Beck, Kristen K.; Medeiros, Andrew S.

2016-01-01

A Holocene lake sediment record spanning the past 7300 years from Wishart Lake in the Turkey Lakes Watershed in the Hemi-Boreal of central Ontario, Canada, was used to evaluate the potential drivers of long-term change in diatom assemblages at this site. An analysis of diatom assemblages found that benthic and epiphytic taxa dominated the mid-Holocene (7300–4000 cal yr BP), indicating shallow, oligotrophic, circum-neutral conditions, with macrophytes present. A significant shift in diatom assemblages towards more planktonic species (mainly Cyclotella sensu lato, but also several species of Aulacoseira, and Tabellaria flocculosa) occurred ~4000 cal yr BP. This change likely reflects an increase in lake level, coincident with the onset of a more strongly positive moisture balance following the drier climates of the middle Holocene, established by numerous regional paleoclimate records. Pollen-inferred regional changes in vegetation around 4000 yrs BP, including an increase in Betula and other mesic taxa, may have also promoted changes in diatom assemblages through watershed processes mediated by the chemistry of runoff. A more recent significant change in limnological conditions is marked by further increases in Cyclotella sensu lato beginning in the late 19th century, synchronous with the Ambrosia pollen rise and increases in sediment bulk density, signaling regional and local land clearance at the time of Euro-Canadian settlement (1880 AD). In contrast to the mid-Holocene increase in planktonic diatoms, the modern increase in Cyclotella sensu lato likely indicates a response to land use and vegetation change, and erosion from the watershed, rather than a further increase in water level. The results from Wishart Lake illustrate the close connection between paleoclimate change, regional vegetation, watershed processes, and diatom assemblages and also provides insight into the controls on abundance of Cyclotella sensu lato, a diatom taxonomic group which has shown significant increases and complex dynamics in the post-industrial era in lakes spanning temperate to Arctic regions. PMID:27532216

A late Holocene pollen record from proglacial Oblong Tarn, Mount Kenya

PubMed Central

Gajewski, Konrad; Marchant, Rob; Rosqvist, Gunhild

2017-01-01

High-elevation ecosystems, such as those on Mount Kenya are undergoing significant changes, with accelerated glacial ice losses over the twentieth century creating new space for alpine plants to establish. These ecosystems respond rapidly to climatic variability and within decades of glacial retreat, Afroalpine pioneering taxa stabilize barren land and facilitate soil development, promoting complex patches of alpine vegetation. Periglacial lake sediment records can be used to examine centennial and millennial scale variations in alpine and montane vegetation compositions. Here we present a 5300-year composite pollen record from an alpine tarn (4370 m asl) in the Hausberg Valley of Mount Kenya. Overall, the record shows little apparent variation in the pollen assemblage through time with abundant montane forest taxa derived and transported from mid elevations, notably high abundances of aerophilous Podocarpus pollen. Afroalpine taxa included Alchemilla, Helichrysum and Dendrosenecio-type, reflecting local vegetation cover. Pollen from the ericaceous zone was present throughout the record and Poaceae percentages were high, similar to other high elevation pollen records from eastern Africa. The Oblong Tarn record pollen assemblage composition and abundances of Podocarpus and Poaceae since the late Holocene (~4000 cal yr BP-present) are similar to pollen records from mid-to-high elevation sites of nearby high mountains such as Mount Elgon and Kilimanjaro. These results suggest a significant amount of uphill pollen transport with only minor apparent variation in local taxa. Slight decreasing trends in alpine and ericaceous taxonomic groups show a long-term response to global late Holocene cooling and a step decrease in rate of change estimated from the pollen assemblages at 3100 cal yr BP in response to regional hydroclimatic variability. Changes in the principal component axis scores of the pollen assemblage were coherent with an independent mid-elevation temperature reconstruction, which supported the strong influence of uphill pollen transport from montane forest vegetation and association between temperatures and montane vegetation dynamics. Pollen accumulation rates showed some variability related to minerogenic sediment input to the lake. The Oblong Tarn pollen record provides an indication of long term vegetation change atop Mount Kenya showing some decreases in local alpine and ericaceous taxa from 5300–3100 cal yr BP and minor centennial-scale variability of montane taxa from mid elevation forests. The record highlights potentials, challenges and opportunities for the use of proglacial lacustrine sediment to examine vegetation change on prominent mountain massifs. PMID:28926642

Long-term passive restoration following fluvial deposition of sulphidic copper tailings: nature filters out the solutions.

PubMed

Nikolic, Nina; Böcker, Reinhard; Nikolic, Miroslav

2016-07-01

Despite the growing popularity of ecological restoration approach, data on primary succession on toxic post-mining substrates, under site environmental conditions which considerably differ from the surrounding environment, are still scarce. Here, we studied the spontaneous vegetation development on an unusual locality created by long-term and large-scale fluvial deposition of sulphidic tailings from a copper mine in a pronouncedly xerothermic, calcareous surrounding. We performed multivariate analyses of soil samples (20 physical and chemical parameters) and vegetation samples (floristic and structural parameters in three types of occurring forests), collected along the pollution gradients throughout the affected floodplain. The nature can cope with two types of imposed constraints: (a) excessive Cu concentrations and (b) very low pH, combined with nutrient deficiency. The former will still allow convergence to the original vegetation, while the latter will result in novel, depauperate assemblages of species typical for cooler and moister climate. Our results for the first time demonstrate that with the increasing severity of environmental filtering, the relative importance of the surrounding vegetation for primary succession strongly decreases.

Evidence of Facilitation Cascade Processes as Drivers of Successional Patterns of Ecosystem Engineers at the Upper Altitudinal Limit of the Dry Puna.

PubMed

Malatesta, Luca; Tardella, Federico Maria; Piermarteri, Karina; Catorci, Andrea

2016-01-01

Facilitation processes constitute basic elements of vegetation dynamics in harsh systems. Recent studies in tropical alpine environments demonstrated how pioneer plant species defined as "ecosystem engineers" are capable of enhancing landscape-level richness by adding new species to the community through the modification of microhabitats, and also provided hints about the alternation of different ecosystem engineers over time. Nevertheless, most of the existing works analysed different ecosystem engineers separately, without considering the interaction of different ecosystem engineers. Focusing on the altitudinal limit of Peruvian Dry Puna vegetation, we hypothesized that positive interactions structure plant communities by facilitation cascades involving different ecosystem engineers, determining the evolution of the microhabitat patches in terms of abiotic resources and beneficiary species hosted. To analyze successional mechanisms, we used a "space-for-time" substitution to account for changes over time, and analyzed data on soil texture, composition, and temperature, facilitated species and their interaction with nurse species, and surface area of engineered patches by means of chemical analyses, indicator species analysis, and rarefaction curves. A successional process, resulting from the dynamic interaction of different ecosystem engineers, which determined a progressive amelioration of soil conditions (e.g. nitrogen and organic matter content, and temperature), was the main driver of species assemblage at the community scale, enhancing species richness. Cushion plants act as pioneers, by starting the successional processes that continue with shrubs and tussocks. Tussock grasses have sometimes been found to be capable of creating microhabitat patches independently. The dynamics of species assemblage seem to follow the nested assemblage mechanism, in which the first foundation species to colonize a habitat provides a novel substrate for colonization by other foundation species through a facilitation cascade process.

The structure of western warbler assemblages: Analysis of foraging behavior and habitat selection in Oregon

USGS Publications Warehouse

Morrison, Michael L.

1981-01-01

This study examines the foraging behavior and habitat selection of a MacGillivray's (Oporornis tolmiei)-Orange-crowned (Vermivora celata)-Wilson's (Wilsonia pusilla) warbler assemblage that occurred on early-growth clearcuts in western Oregon during breeding. Sites were divided into two groups based on the presence or absence of deciduous trees. Density estimates for each species were nearly identical between site classes except for Wilson's, whose density declined on nondeciduous tree sites. Analysis of vegetation parameters within the territories of the species identified deciduous tree cover as the variable of primary importance in the separation of warblers on each site, so that the assemblage could be arranged on a continuum of increasing deciduous tree cover. MacGillivray's and Wilson's extensively used shrub cover and deciduous tree cover, respectively; Orange-crowns were associated with both vegetation types. When the deciduous tree cover was reduced, Orange-crowns concentrated foraging activities in shrub cover and maintained nondisturbance densities. Indices of foraging-height diversity showed a marked decrease after the removal of deciduous trees. All species except MacGillivray's foraged lower in the vegatative substrate on the nondeciduous tree sites; MacGillivray's concentrated foraging activities in the low shrub cover on both sites. Indices of foraging overlap revealed a general pattern of decreased segregation by habitat after removal of deciduous trees. I suggest that the basic patterns of foraging behavior and habitat selection evidenced today in western North America were initially developed by ancestral warblers before their invasion of the west. Species successfully colonizing western habitats were probably preadapted to the conditions they encountered, with new habitats occupied without obvious evolutionary modifications.

Evidence of Facilitation Cascade Processes as Drivers of Successional Patterns of Ecosystem Engineers at the Upper Altitudinal Limit of the Dry Puna

PubMed Central

2016-01-01

Facilitation processes constitute basic elements of vegetation dynamics in harsh systems. Recent studies in tropical alpine environments demonstrated how pioneer plant species defined as “ecosystem engineers” are capable of enhancing landscape-level richness by adding new species to the community through the modification of microhabitats, and also provided hints about the alternation of different ecosystem engineers over time. Nevertheless, most of the existing works analysed different ecosystem engineers separately, without considering the interaction of different ecosystem engineers. Focusing on the altitudinal limit of Peruvian Dry Puna vegetation, we hypothesized that positive interactions structure plant communities by facilitation cascades involving different ecosystem engineers, determining the evolution of the microhabitat patches in terms of abiotic resources and beneficiary species hosted. To analyze successional mechanisms, we used a “space-for-time” substitution to account for changes over time, and analyzed data on soil texture, composition, and temperature, facilitated species and their interaction with nurse species, and surface area of engineered patches by means of chemical analyses, indicator species analysis, and rarefaction curves. A successional process, resulting from the dynamic interaction of different ecosystem engineers, which determined a progressive amelioration of soil conditions (e.g. nitrogen and organic matter content, and temperature), was the main driver of species assemblage at the community scale, enhancing species richness. Cushion plants act as pioneers, by starting the successional processes that continue with shrubs and tussocks. Tussock grasses have sometimes been found to be capable of creating microhabitat patches independently. The dynamics of species assemblage seem to follow the nested assemblage mechanism, in which the first foundation species to colonize a habitat provides a novel substrate for colonization by other foundation species through a facilitation cascade process. PMID:27902757

Effects of landscape change on fish assemblage structure in a rapidly growing metropolitan area in North Carolina, USA

USGS Publications Warehouse

Kennen, J.G.; Chang, M.; Tracy, B.H.

2005-01-01

We evaluated a comprehensive set of natural and land-use attributes that represent the major facets of urban development at fish monitoring sites in the rapidly growing Raleigh-Durham, North Carolina metropolitan area. We used principal component and correlation analysis to obtain a nonredundant subset of variables that extracted most variation in the complete set. With this subset of variables, we assessed the effect of urban growth on fish assemblage structure. We evaluated variation in fish assemblage structure with nonmetric multidimensional scaling (NMDS). We used correlation analysis to identify the most important environmental and landscape variables associated with significant NMDS axes. The second NMDS axis is related to many indices of land-use/land-cover change and habitat. Significant correlations with proportion of largest forest patch to total patch size (r = -0.460, P < 0.01), diversity of patch types (r = 0.554, P < 0.001), and population density (r = 0.385, P < 0.05) helped identify NMDS axis 2 as a disturbance gradient. Positive and negative correlations between the abundance of redbreast sunfish Lepomis auritus and bluehead chub Nocomis leptocephalus, respectively, and NMDS axis 2 also were evident. The North Carolina index of biotic integrity and many of its component metrics were highly correlated with urbanization. These results indicate that aquatic ecosystem integrity would be optimized by a comprehensive integrated management strategy that includes the preservation of landscape function by maximizing the conservation of contiguous tracts of forested lands and vegetative cover in watersheds. ?? 2005 by the American Fisheries Society.

Littoral zone fish assemblages of northern Cayuga Lake.

USGS Publications Warehouse

McKenna, James E.

2001-01-01

Fish assemblages from northern Cayuga Lake were examined for patterns in temporal structure. Fish assemblages changed significantly between seasons. Bluegill (Lepomis macrochirus), bluntnose minnow (Pimephales notatus), and smallmouth bass (Micropterus dolomieu) formed the basis for most assemblages, but the spring assemblage was dominated by common carp (Cyprinus carpio). Correlations between community structure and abiotic factors were identified. Ten abiotic factors strongly influenced species assemblages, including phosphorus concentration, but could not fully explain differences between assemblages. Results indicate that the seasonal pattern of fish assemblage structure and abundance of fish that tend to feed in the water column were related to the annual cycle of productivity in the lake and behavioral adaptations of the fish.

Fish assemblage structure in an Oklahoma Ozark stream before and after rainbow trout introduction

USGS Publications Warehouse

Walsh, M.G.; Winkelman, D.L.

2005-01-01

Rainbow trout Oncorhynchus mykiss have been widely stocked throughout the United States as a popular sport fish. Our study was initiated to evaluate potential effects of rainbow trout introduction on native fishes to inform future decisions about trout stocking in northeastern Oklahoma streams. We sampled fish assemblages in pools, glides, and riffles in Brush Creek, Delaware County, Oklahoma, from February 2000 to September 2002, and experimentally stocked rainbow trout into the stream from November 2000 to March 2001 and November 2001 to March 2002. We used a combination of multivariate analyses to evaluate seasonal and habitat effects on native fish assemblages and to compare assemblage structure between prestocking, the first year of stocking, and the second year of stocking. Mesohabitat type significantly affected assemblage structure among years, whereas we did not detect an effect of season. We did not detect differences in assemblage structure among years in glide or riffle habitats. Native fish assemblage structure in pool habitats before rainbow trout introduction differed from assemblage structure in both the first and second year of stocking. Declines in seven species, including two native game fish (smallmouth bass Micropterus dolomieu and bluegill Lepomis machrochirus), contributed to assemblage dissimilarity in pool habitats between prestocking conditions and the second year of stocking. Our results indicate that stocking rainbow trout may cause local disruption in assemblage structure in pool habitats. ?? 2004 by the American Fisheries Society.

Effects of large-scale wildfire on ground foraging ants (Hymenoptera: Formicidae) in southern California

USGS Publications Warehouse

Matsuda, Tritia; Turschak, Greta; Brehme, Cheryl; Rochester, Carlton; Mitrovich, Milan; Fisher, Robert

2011-01-01

We investigated the effect of broad-scale wildfire on ground foraging ants within southern California. In October and November of 2003, two wildfires burned large portions of the wildlands within San Diego County. Between January 2005 and September 2006, we surveyed 63 plots across four sites to measure the effect of the fires on the ant assemblages present in four vegetation types: 1) coastal sage scrub, 2) chaparral, 3) grassland, and 4) woodland riparian. Thirty-six of the 63 plots were sampled before the fires between March 2001 and June 2003. Mixed model regression analyses, accounting for the burn history of each plot and our pre- and postfire sampling efforts, revealed that fire had a negative effect on ant species diversity. Multivariate analyses showed that ant community structure varied significantly among the four vegetation types, and only the ant assemblage associated with coastal sage scrub exhibited a significant difference between burned and unburned samples. The most notable change detected at the individual species level involved Messor andrei (Mayr), which increased from <1% of prefire coastal sage scrub ant samples to 32.1% in burned plots postfire. We theorize that M. andrei responded to the increase of bare ground and postfire seed production, leading to an increase in the detection rate for this species. Collectively, our results suggest that wildfires can have short-term impacts on the diversity and community structure of ground foraging ants in coastal sage scrub. We discuss these findings in relation to management implications and directions for future research.

Black liquor and the hangover effect: fish assemblage recovery dynamics following a pulse disturbance

PubMed Central

Piller, Kyle R; Geheber, Aaron D

2015-01-01

Anthropogenic perturbations impact aquatic systems causing wide-ranging responses, from assemblage restructuring to assemblage recovery. Previous studies indicate the duration and intensity of disturbances play a role in the dynamics of assemblage recovery. In August 2011, the Pearl River, United States, was subjected to a weak black liquor spill from a paper mill which resulted in substantial loss of fish in a large stretch of the main channel. We quantified resilience and recovery of fish assemblage structure in the impacted area following the event. We compared downstream (impacted) assemblages to upstream (unimpacted) assemblages to determine initial impacts on structure. Additionally, we incorporated historic fish collections (1988–2011) to examine impacts on assemblage structure across broad temporal scales. Based on NMDS, upstream and downstream sites generally showed similar assemblage structure across sample periods with the exception of the 2 months postdischarge, where upstream and downstream sites visually differed. Multivariate analysis of variance (PERMANOVA) indicated significant seasonal variation among samples, but found no significant interaction between impacted and unimpacted assemblages following the discharge event. However, multivariate dispersion (MVDISP) showed greater variance among assemblage structure following the discharge event. These results suggest that 2 months following the disturbance represent a time period of stochasticity in regard to assemblage structure dynamics, and this was followed by rapid recovery. We term this dynamic the “hangover effect” as it represents the time frame from the cessation of the perturbation to the assemblage's return to predisturbance conditions. The availability and proximity of tributaries and upstream refugia, which were not affected by the disturbance, as well as the rapid recovery of abiotic parameters likely played a substantial role in assemblage recovery. This study not only demonstrates rapid recovery in an aquatic system, but further demonstrates the value of continuous, long-term, data collections which enhance our understanding of assemblage dynamics. PMID:26120432

Extensive wildfires, climate change, and an abrupt state change in subalpine ribbon forests, Colorado.

PubMed

Calder, W John; Shuman, Bryan

2017-10-01

Ecosystems may shift abruptly when the effects of climate change and disturbance interact, and landscapes with regularly patterned vegetation may be especially vulnerable to abrupt shifts. Here we use a fossil pollen record from a regularly patterned ribbon forest (alternating bands of forests and meadows) in Colorado to examine whether past changes in wildfire and climate produced abrupt vegetation shifts. Comparing the percentages of conifer pollen with sedimentary δ 18 O data (interpreted as an indicator of temperature or snow accumulation) indicates a first-order linear relationship between vegetation composition and climate change with no detectable lags over the past 2,500 yr (r = 0.55, P < 0.001). Additionally, however, we find that the vegetation changed abruptly within a century of extensive wildfires, which were recognized in a previous study to have burned approximately 80% of the surrounding 1,000 km 2 landscape 1,000 yr ago when temperatures rose ~0.5°C. The vegetation change was larger than expected from the effects of climate change alone. Pollen assemblages changed from a composition associated with closed subalpine forests to one similar to modern ribbon forests. Fossil pollen assemblages then remained like those from modern ribbon forests for the following ~1,000 yr, providing a clear example of how extensive disturbances can trigger persistent new vegetation states and alter how vegetation responds to climate. © 2017 by the Ecological Society of America.

Differences in the structure of copepod assemblages in four tropical estuaries: Importance of pollution and the estuary hydrodynamics.

PubMed

Araujo, Adriana V; Dias, Cristina O; Bonecker, Sérgio L C

2017-02-15

We examined the relationship between pollution and structure of copepod assemblages in estuaries, using sampling standardization of salinity range to reduce the effects of "Estuarine Quality Paradox". Copepod assemblages were analyzed in four Southeast Brazilian estuaries with different water quality levels and different hydrodynamic characteristics. The pollution negatively impacted the descriptors of the assemblage structure. The distribution of structure of copepod assemblages also showed a main separation trend between the most polluted estuaries and those less polluted. Temperature was the main factor affecting the assemblage structuring in the four estuaries. This factor acted in synergism with the effects of pollution impact and physical characteristics of the estuaries on the structure of copepod assemblages, supporting the potential vulnerability of coastal environments due to nutrient enrichment associated with climate change. Our study demonstrated the importance of sampling standardization of the salinity range in estuaries for reliable analysis of pollution effects on biota. Copyright © 2016 Elsevier Ltd. All rights reserved.

Quantifying forest vertical structure to determine bird habitat quality in the Greenbelt Corridor, Denton, TX

NASA Astrophysics Data System (ADS)

Matsubayashi, Shiho

This study presents the integration of light detection and range (LiDAR) and hyperspectral remote sensing to create a three-dimensional bird habitat map in the Greenbelt Corridor of the Elm Fork of the Trinity River. This map permits to examine the relationship between forest stand structure, landscape heterogeneity, and bird community composition. A biannual bird census was conducted at this site during the breeding seasons of 2009 and 2010. Census data combined with the three-dimensional map suggest that local breeding bird abundance, community structure, and spatial distribution patterns are highly influenced by vertical heterogeneity of vegetation surface. For local breeding birds, vertical heterogeneity of canopy surface within stands, connectivity to adjacent forest patches, largest forest patch index, and habitat (vegetation) types proved to be the most influential factors to determine bird community assemblages. Results also highlight the critical role of secondary forests to increase functional connectivity of forest patches. Overall, three-dimensional habitat descriptions derived from integrated LiDAR and hyperspectral data serve as a powerful bird conservation tool that shows how the distribution of bird species relates to forest composition and structure at various scales.

Ichthyoplankton assemblage structure of springs in the Yangtze Estuary revealed by biological and environmental visions.

PubMed

Zhang, Hui; Xian, Weiwei; Liu, Shude

2015-01-01

The ichthyoplankton assemblage structure in the Yangtze Estuary was analyzed based on four springs in 1999, 2001, 2004 and 2007 in order to provide detailed characterizations of the ichthyoplankton assemblage in springs, examine the long-term dynamics of spring ichthyoplankton assemblages, and evaluate the influence of environmental factors on the spatial distribution and inter-annual variations of ichthyoplankton assemblages associated with the Yangtze Estuary. Forty-two ichthyoplankton species belonging to 23 families were collected. Engraulidae was the most abundant family, including six species and comprising 67.91% of the total catch. Only four species (Coilia mystus, Engraulis japonicus, Trachidermis fasciatus and Allanetta bleekeri) could be considered dominant, accounting for 88.70% of total abundance. The structure of the ichthyoplankton spring assemblage persisted on an annual basis, with the dominant species reappearing consistently even though their abundance fluctuated from year to year. This inter-annual variation probably reflects variable environmental conditions influenced by jellyfish blooms, declining river flow, and overfishing. Canonical correspondence analysis indicated aspatial structure of the ichthyoplankton assemblage in three areas: (1) an inner assemblage dominated by C. mystus; (2) a central assemblage dominated by A. bleekeri and T. fasciatus; and (3) a shelf assemblage featuring E. japonicus. The observed ichthyoplankton assemblage structure appears to be strongly influenced by depth, salinity and suspended particulate matter gradients.

Ichthyoplankton assemblage structure of springs in the Yangtze Estuary revealed by biological and environmental visions

PubMed Central

Zhang, Hui; Liu, Shude

2015-01-01

The ichthyoplankton assemblage structure in the Yangtze Estuary was analyzed based on four springs in 1999, 2001, 2004 and 2007 in order to provide detailed characterizations of the ichthyoplankton assemblage in springs, examine the long-term dynamics of spring ichthyoplankton assemblages, and evaluate the influence of environmental factors on the spatial distribution and inter-annual variations of ichthyoplankton assemblages associated with the Yangtze Estuary. Forty-two ichthyoplankton species belonging to 23 families were collected. Engraulidae was the most abundant family, including six species and comprising 67.91% of the total catch. Only four species (Coilia mystus, Engraulis japonicus, Trachidermis fasciatus and Allanetta bleekeri) could be considered dominant, accounting for 88.70% of total abundance. The structure of the ichthyoplankton spring assemblage persisted on an annual basis, with the dominant species reappearing consistently even though their abundance fluctuated from year to year. This inter-annual variation probably reflects variable environmental conditions influenced by jellyfish blooms, declining river flow, and overfishing. Canonical correspondence analysis indicated aspatial structure of the ichthyoplankton assemblage in three areas: (1) an inner assemblage dominated by C. mystus; (2) a central assemblage dominated by A. bleekeri and T. fasciatus; and (3) a shelf assemblage featuring E. japonicus. The observed ichthyoplankton assemblage structure appears to be strongly influenced by depth, salinity and suspended particulate matter gradients. PMID:26312180

Differences in breeding bird assemblages related to reed canary grass cover cover and forest structure on the Upper Mississippi River

USGS Publications Warehouse

Kirsch, Eileen M.; Gray, Brian R.

2017-01-01

Floodplain forest of the Upper Mississippi River provides habitat for an abundant and diverse breeding bird community. However, reed canary grass Phalaris arundinacea invasion is a serious threat to the future condition of this forest. Reed canary grass is a well-known aggressive invader of wetland systems in the northern tier states of the conterminous United States. Aided by altered flow regimes and nutrient inputs from agriculture, reed canary grass has formed dense stands in canopy gaps and forest edges, retarding tree regeneration. We sampled vegetation and breeding birds in Upper Mississippi River floodplain forest edge and interior areas to 1) measure reed canary grass cover and 2) evaluate whether the breeding bird assemblage responded to differences in reed canary grass cover. Reed canary grass was found far into forest interiors, and its cover was similar between interior and edge sites. Bird assemblages differed between areas with more or less reed canary grass cover (.53% cover breakpoint). Common yellowthroat Geothlypis trichas, black-capped chickadee Parus atricapillus, and rose-breasted grosbeak Pheucticus ludovicianus were more common and American redstart Setophaga ruticilla, great crested flycatcher Myiarchus crinitus, and Baltimore oriole Icterus galbula were less common in sites with more reed canary grass cover. Bird diversity and abundance were similar between sites with different reed canary grass cover. A stronger divergence in bird assemblages was associated with ground cover ,15%, resulting from prolonged spring flooding. These sites hosted more prothonotary warbler Protonotaria citrea, but they had reduced bird abundance and diversity compared to other sites. Our results indicate that frequently flooded sites may be important for prothonotary warblers and that bird assemblages shift in response to reed canary grass invasion.

Spatial and temporal variability in the structure of invertebrate assemblages in control stream mesocosms.

PubMed

Wong, Diana C L; Maltby, Lorraine; Whittle, Don; Warren, Philip; Dorn, Philip B

2004-01-01

Outdoor stream mesocosm studies conducted between 1992 and 1996 at two facilities enabled the investigation of structural variability in invertebrate assemblages within and between studies. Temporal variability of benthic invertebrate assemblages between eight replicate streams within a study was assessed in a 28-day mesocosm study without chemical treatment. Cluster analysis, non-metric multidimensional scaling, and principal component analysis each showed the untreated assemblages as structurally distinct groups on the three sampling days. The assemblages between the eight replicate streams showed >88% Bray-Curtis similarity at any one time during the study. In addition, pre-treatment data from a series of four studies conducted at one facility were used to examine structural variability in the starting benthic invertebrate assemblages between studies. Invertebrate assemblages were structurally distinct at the start of each mesocosm study conducted in different years at the same facility and the taxa responsible for differences in the assemblages were also different each year. The implications of temporal and spatial variability in benthic invertebrate assemblages within and between mesocosm studies with regards to species sensitivity and study repeatability should be considered when results of such studies are used in risk assessment.

The influence of riparian vegetation on the energy input of the rivers Lafnitz and Pinka

NASA Astrophysics Data System (ADS)

Holzapfel, Gerda; Rauch, Hans Peter; Weihs, Philipp; Trimmel, Heidelinde; Formayer, Herbert; Leitner, Patrick; Graf, Wolfram; Melcher, Andreas; Dossi, Florian

2013-04-01

In Central Europe freshwater ecosystems have to deal with a loss of habitat structures due to channelisation and standardisation. Unimpaired streams and rivers are very rare, which leads to a few, remaining populations of sensitive invertebrate species which are severely fragmented. This progress is mainly noticed in lowland rivers in agricultural intensely used areas, where habitat degradation and pollution affect the ecosystems. Additional pressures on the freshwater systems will be expected due to climate change effects. In the Austrian Lowlands, an increase of air temperature about 2-2.5 °C is predicted till 2040. This will in turn lead to the highest increase in water temperature in the lowland rivers of the "Hungarian Plains", Ecoregion 11 on which the impacts of climate change will most likely be highest in Austria. Global warming on its own may lead to severe changes in aquatic ecosystems. Human impacts increase the negative effects even more. Main factors for a sustainable survival of benthic invertebrates and fishes are closely connected with parameters like water temperature, the availability of oxygen and nutrients, or radiation and nutrients for primary production which are closely related to climate. Natural bank vegetation reduces the influx of solar radiation as well as it forms a microclimate of its own and could provide very important niches for terrestrial and aquatic stages. Riparian areas with trees provide direct shade for the water body and thus avoiding the corresponding increase in water temperature. Wide riparian wooded areas can even decrease evaporation and increase the relative air humidity, which contributes to reducing water temperature. Input of deadwood like trees or logs represents essential habitats for invertebrates and fish assemblages. Its presence is one essential drivers of bed-morphology creating heterogeneous instream habitat patterns. In the framework of the project BIO_CLIC the potential of riparian vegetation to mitigate effects of climate change on biological assemblages of small and medium sized running waters will be investigated. The results support river managers in implementing integrative guidelines for sustainable river restoration towards climate change adaptation, ecological services and socio-economic consequences. In this paper the influence of riparian vegetation on the energy input of rivers will be highlighted. As a first step in field works habitat characteristics will be examined and described. First results show riparian vegetation datasets for different riparian vegetation types with 3D spatial distribution of vegetation, riparian vegetation composition and radiation attenuation coefficients for different vegetation types.

Environmental variables measured at multiple spatial scales exert uneven influence on fish assemblages of floodplain lakes

USGS Publications Warehouse

Dembkowski, Daniel J.; Miranda, Leandro E.

2014-01-01

We examined the interaction between environmental variables measured at three different scales (i.e., landscape, lake, and in-lake) and fish assemblage descriptors across a range of over 50 floodplain lakes in the Mississippi Alluvial Valley of Mississippi and Arkansas. Our goal was to identify important local- and landscape-level determinants of fish assemblage structure. Relationships between fish assemblage structure and variables measured at broader scales (i.e., landscape-level and lake-level) were hypothesized to be stronger than relationships with variables measured at finer scales (i.e., in-lake variables). Results suggest that fish assemblage structure in floodplain lakes was influenced by variables operating on three different scales. However, and contrary to expectations, canonical correlations between in-lake environmental characteristics and fish assemblage structure were generally stronger than correlations between landscape-level and lake-level variables and fish assemblage structure, suggesting a hierarchy of influence. From a resource management perspective, our study suggests that landscape-level and lake-level variables may be manipulated for conservation or restoration purposes, and in-lake variables and fish assemblage structure may be used to monitor the success of such efforts.

Molecular epidemiology of giardiasis among Orang Asli in Malaysia: application of the triosephosphate isomerase gene

PubMed Central

2014-01-01

Background Giardia duodenalis is a flagellate parasite which has been considered the most common protozoa infecting human worldwide. Molecular characterization of G. duodenalis isolates have revealed the existence of eight groups (Assemblage A to H) which differ in their host distribution. Assemblages A and B are found in humans and in many other mammals. Methods This cross-sectional study was conducted to identify assemblage’s related risk factors of G. duodenalis among Orang Asli in Malaysia. Stool samples were collected from 611 individuals aged between 2 and 74 years old of whom 266 were males and 345 were females. Socioeconomic data were collected through a pre-tested questionnaire. All stool samples were processed with formalin-ether sedimentation and Wheatley’s trichrome staining techniques for the primary identification of G. duodenalis. Molecular identification was carried out by the amplification of a triosephosphate isomerase gene using nested-PCR assay. Results Sixty-two samples (10.2%) were identified as assemblage A and 36 (5.9%) were assemblage B. Risk analysis based on the detected assemblages using univariate and logistic regression analyses identified subjects who have close contact with household pets i.e. dogs and cats (OR = 2.60; 95% CI = 1.42, 4.78; P = 0.002) was found to be significant predictor for assemblage A. On the other hand, there were three significant risk factors caused by assemblage B: (i) children ≤15 years old (OR = 2.33; 95% CI = 1.11, 4.87; P = 0.025), (ii) consuming raw vegetables (OR = 2.82; 95% CI = 1.27, 6.26; P = 0.011) and (iii) the presence of other family members infected with giardiasis (OR = 6.31; 95% CI = 2.99, 13.31; P < 0.001). Conclusions The present study highlighted that G. duodenalis infection among Orang Asli was caused by both assemblages with significant high prevalence of assemblage A. Therefore, taking precaution after having contact with household pets and their stool, screening and treating infected individuals, awareness on the importance of good health practices and washing vegetables are the practical intervention ways in preventing giardiasis in Orang Asli community. PMID:24520940

Recent saltmarsh foraminiferal assemblages from Iceland

NASA Astrophysics Data System (ADS)

Lübbers, Julia; Schönfeld, Joachim

2018-01-01

This study reports for the first time boreal to subarctic intertidal foraminiferal assemblages from saltmarshes at Borgarnes and Faskrudsfjördur on Iceland. The composition of living and dead foraminiferal assemblages was investigated along transects from the tidal flat to the highest reach of halophytic plants. The foraminiferal assemblages from Borgarnes showed 18 species in the total foraminiferal assemblage of which only 7 species were recorded in the living fauna. The assemblages were dominated by agglutinated taxa, whereas 3 calcareous species were recorded, of which only Haynesina orbicularis was found in the living fauna. The distribution limit of calcifying species corresponds to the lower boundary of the lower saltmarsh vegetation zone. Furthermore, calcareous tests showed many features of dissolution, which is an indication of a carbonate corrosive environment. The species forming the dead assemblages were mainly derived from the ambient intertidal areas and were displaced by tidal currents into the saltmarsh. The foraminiferal assemblages from Faskrudsfjördur showed two species, of which only one species was recorded in the living fauna. The assemblage was dominated by the agglutinated foraminifer Trochaminita irregularis. The foraminiferal species recorded on Iceland were the same as commonly found elsewhere in Europa. Since no species was found which is endemic to North America, Iceland is considered part of the European bio province. The foraminiferal could have been immigrated to Iceland from Europe through warm water currents, migratory birds or marine traffic since the last Ice Age.

Additive partitioning of testate amoeba species diversity across habitat hierarchy within the pristine southern taiga landscape (Pechora-Ilych Biosphere Reserve, Russia).

PubMed

Tsyganov, Andrey N; Komarov, Alexander A; Mitchell, Edward A D; Shimano, Satoshi; Smirnova, Olga V; Aleynikov, Alexey A; Mazei, Yuri A

2015-02-01

In order to better understand the distribution patterns of terrestrial eukaryotic microbes and the factors governing them, we studied the diversity partitioning of soil testate amoebae across levels of spatially nested habitat hierarchy in the largest European old-growth dark coniferous forest (Pechora-Ilych Biosphere Reserve; Komi Republic, Russia). The variation in testate amoeba species richness and assemblage structure was analysed in 87 samples from six biotopes in six vegetation types using an additive partitioning procedure and principal component analyses. The 80 taxa recorded represent the highest value of species richness for soil testate amoebae reported for taiga soils so far. Our results indicate that testate amoeba assemblages were highly aggregated at all levels and were mostly controlled by environmental factors rather than dispersal processes. The variation in species diversity of testate amoebae increased from the lowest to the highest hierarchical level. We conclude that, similarly to macroscopic organisms, testate amoeba species richness and community structure are primarily controlled by environmental conditions within the landscape and suggest that metacommunity dynamics of free-living microorganisms are driven by species sorting and/or mass effect processes. Copyright © 2014 Elsevier GmbH. All rights reserved.

Characterization of Seasonally Dependent Emergent Vegetation Variables for Coastal Impact Models

NASA Astrophysics Data System (ADS)

Stellern, C.; Grossman, E.; Linneman, S. R.; Fuller, R.

2015-12-01

Emergent wetland vegetation has been shown to mitigate coastal inundation and erosion hazards by reducing wave energy through friction (Shepard et al., 2011), although its use in coastal protection planning is limited because predictive models require improved vegetation data. We isolated biophysical characteristics (biomass, stem density, rigidity, etc.) of plants using horizontal digital photographs (Side-On Photos) in conjunction with remote sensing and physical surveys. We studied the dominant salt-marsh species/assemblages in Port Susan Bay of Washington State, a vulnerable estuary that has experienced up to 1 kilometer of marsh retreat since the mid-1960s. We measured plant height, stem diameter, stem density (area available for flow) from fall to early spring (August 2014 through April 2015) using Side-On Photography and digital image processing techniques. Metrics from Side-On Photography were highly correlated to physical lab measurements. Vegetation rigidity was measured in-situ with a handheld digital scale with respect to measurement height and bending angle. Plant elasticity showed a strong correlation to stem diameter in two dominant bulrush species. We employed remote sensing supervised classifications techniques (Maximum-Likelihood and Decision Tree Classifiers) to hyperspectral imagery to map the spatial extent of vegetation assemblages with an overall accuracy of 86.7%. Combining these methods enabled us to extrapolate and validate vegetation characteristics across the study area and to estimate species-specific friction coefficients for input to cross-shore wave models. On-going studies include sensitivity analyses of wave models to seasonally-dependent vegetation parameters in the nearshore and ultimately wave impacts along the coast. By accounting for site-specific and spatiotemporal variability in vegetation data, we inform scientific understanding of the interactions of vegetation, waves, and sediment processes.

Young Stand Thinning and Diversity Study: Response of Songbird Community One Decade Post-Treatment

USGS Publications Warehouse

Hagar, Joan; Friesen, Cheryl

2009-01-01

The response of songbird assemblages to commercial thinning is likely to change as vegetation develops over time after thinning. The influence of thinning intensity and pattern on the timing of transitions in bird community composition following thinning is of interest to managers when a goal is to maintain diversity and accelerate the development of late-seral forest structure. We investigated changes in the composition of songbird assemblages and density of individual species from 2 years before to 12 years after experimental thinning of 40-year-old stands dominated by Douglas-fir (Pseudotsuga menziesii) in the Oregon Cascades. Species richness, and density for five species and the neotropical migrant group were greater in thinned than in unthinned control stands over all post-treatment years of the study. Similarly, three species maintained a negative response to thinning over the post-treatment period. The initial positive influence of thinning was no longer in evidence a decade after harvest for five species. Of seven species with an initial negative response to thinning, three indicated recovery towards pre-treatment densities by the end of the most recent post-treatment survey. Our study is one of the first to document long-term effects of commercial thinning on forest songbird assemblages in the Pacific Northwest.

Disentangling vegetation diversity from climate–energy and habitat heterogeneity for explaining animal geographic patterns

USGS Publications Warehouse

Jimenez-Alfaro, Borja; Chytry, Milan; Mucina, Ladislav; Grace, James B.; Rejmanek, Marcel

2016-01-01

Broad-scale animal diversity patterns have been traditionally explained by hypotheses focused on climate–energy and habitat heterogeneity, without considering the direct influence of vegetation structure and composition. However, integrating these factors when considering plant–animal correlates still poses a major challenge because plant communities are controlled by abiotic factors that may, at the same time, influence animal distributions. By testing whether the number and variation of plant community types in Europe explain country-level diversity in six animal groups, we propose a conceptual framework in which vegetation diversity represents a bridge between abiotic factors and animal diversity. We show that vegetation diversity explains variation in animal richness not accounted for by altitudinal range or potential evapotranspiration, being the best predictor for butterflies, beetles, and amphibians. Moreover, the dissimilarity of plant community types explains the highest proportion of variation in animal assemblages across the studied regions, an effect that outperforms the effect of climate and their shared contribution with pure spatial variation. Our results at the country level suggest that vegetation diversity, as estimated from broad-scale classifications of plant communities, may contribute to our understanding of animal richness and may be disentangled, at least to a degree, from climate–energy and abiotic habitat heterogeneity.

Process-Based Species Pools Reveal the Hidden Signature of Biotic Interactions Amid the Influence of Temperature Filtering.

PubMed

Lessard, Jean-Philippe; Weinstein, Ben G; Borregaard, Michael K; Marske, Katharine A; Martin, Danny R; McGuire, Jimmy A; Parra, Juan L; Rahbek, Carsten; Graham, Catherine H

2016-01-01

A persistent challenge in ecology is to tease apart the influence of multiple processes acting simultaneously and interacting in complex ways to shape the structure of species assemblages. We implement a heuristic approach that relies on explicitly defining species pools and permits assessment of the relative influence of the main processes thought to shape assemblage structure: environmental filtering, dispersal limitations, and biotic interactions. We illustrate our approach using data on the assemblage composition and geographic distribution of hummingbirds, a comprehensive phylogeny and morphological traits. The implementation of several process-based species pool definitions in null models suggests that temperature-but not precipitation or dispersal limitation-acts as the main regional filter of assemblage structure. Incorporating this environmental filter directly into the definition of assemblage-specific species pools revealed an otherwise hidden pattern of phylogenetic evenness, indicating that biotic interactions might further influence hummingbird assemblage structure. Such hidden patterns of assemblage structure call for a reexamination of a multitude of phylogenetic- and trait-based studies that did not explicitly consider potentially important processes in their definition of the species pool. Our heuristic approach provides a transparent way to explore patterns and refine interpretations of the underlying causes of assemblage structure.

Excess density compensation of island herpetofaunal assemblages

USGS Publications Warehouse

Rodda, G.H.; Dean-Bradley, K.

2002-01-01

Aim Some species reach extraordinary densities on islands. Island assemblages have fewer species, however, and it is possible that island species differ from their mainland counterparts in average mass. Island assemblages could be partitioned differently (fewer species or smaller individuals) from mainland sites without differing in aggregate biomass (density compensation). Our objective was to determine the generality of excess density compensation in island herpetofaunal assemblages.Location Our bounded removal plot data were obtained from Pacific Island sites (Guam, Saipan and Rota), the West Indies (British Virgin Islands), and the Indian Ocean (Ile aux Aigrettes off Mauritius). The literature values were taken from several locales. Other island locations included Barro Colorado Island, Bonaire, Borneo, Philippine Islands, Seychelle Islands, Barrow Island (Australia), North Brother Island (New Zealand), Dominica and Puerto Rico. Mainland sites included Costa Rica, Ivory Coast, Cameroon, Australia, Thailand, Peru, Brazil, Panama and the USA.Method We added our thirty-nine bounded total removal plots from sixteen island habitats to fifteen literature records to obtain seventy-five venues with estimable density and biomass of arboreal or terrestrial herpetofaunal assemblages. These biomass estimates were evaluated geographically and in relation to sampling method, insularity, latitude, disturbance regime, seasonality, community richness, vegetative structure and climate. Direct data on trophic interactions (food availability, parasitism and predation pressure) were generally unavailable. Sampling problems were frequent for arboreal, cryptic and evasive species.Results and main conclusions We found strong evidence that herpetofaunal assemblages on small islands (mostly lizards) exhibit a much greater aggregate density of biomass (kg ha−1) than those of larger islands or mainland assemblages (small islands show excess density compensation). High aggregate biomass density was more strongly associated with the degree of species impoverishment on islands than it was on island area or insularity per se. High aggregate biomass density was not strongly associated with latitude, precipitation, canopy height or a variety of other physical characteristics of the study sites. The association between high aggregate biomass density and species-poor islands is consistent with the effects of a reduced suite of predators on depauperate islands, but other features may also contribute to excess density compensation.

Ecological consequences of Late Quaternary extinctions of megafauna

PubMed Central

Johnson, C.N.

2009-01-01

Abstract Large herbivorous vertebrates have strong interactions with vegetation, affecting the structure, composition and dynamics of plant communities in many ways. Living large herbivores are a small remnant of the assemblages of giants that existed in most terrestrial ecosystems 50 000 years ago. The extinction of so many large herbivores may well have triggered large changes in plant communities. In several parts of the world, palaeoecological studies suggest that extinct megafauna once maintained vegetation openness, and in wooded landscapes created mosaics of different structural types of vegetation with high habitat and species diversity. Following megafaunal extinction, these habitats reverted to more dense and uniform formations. Megafaunal extinction also led to changes in fire regimes and increased fire frequency due to accumulation of uncropped plant material, but there is a great deal of variation in post-extinction changes in fire. Plant communities that once interacted with extinct large herbivores still contain many species with obsolete defences against browsing and non-functional adaptations for seed dispersal. Such plants may be in decline, and, as a result, many plant communities may be in various stages of a process of relaxation from megafauna-conditioned to megafauna-naive states. Understanding the past role of giant herbivores provides fundamental insight into the history, dynamics and conservation of contemporary plant communities. PMID:19324773

Ontogenetic shifts in fishes between vegetated and unvegetated tidepools: assessing the effect of physical structure on fish habitat selection.

PubMed

Oliveira, R R de S; Macieira, R M; Giarrizzo, T

2016-07-01

The aim of this study of tidepool fishes was analyse variation in their use of intertidal habitats (rocky shore, mangrove and salt marsh). Specimens were collected during wet and dry periods from 18 tidepools in the three habitats. A total of 7690 specimens, belonging to 19 families and 30 species, was captured. The fish assemblage in rocky shore pools was clearly distinct from that of vegetated habitats (mangrove and salt marshes). The rocky shore fauna was dominated by permanent resident species, whereas pools in mangrove and salt marsh habitats were inhabited primarily by opportunistic and transient species. Habitat segregation by ontogenetic stage (e.g. smaller individuals in mangroves, intermediate size classes in salt marsh and sub-adults/adults on rocky shores) indicates age-related migration in response to the physical structure of these habitats and to the natural history of each fish species. These findings are important for the development of effective conservation and management plans for intertidal fishes. © 2016 The Fisheries Society of the British Isles.

Paleo-Antarctic rainforest into the modern Old World tropics: the rich past and threatened future of the "southern wet forest survivors".

PubMed

Kooyman, Robert M; Wilf, Peter; Barreda, Viviana D; Carpenter, Raymond J; Jordan, Gregory J; Sniderman, J M Kale; Allen, Andrew; Brodribb, Timothy J; Crayn, Darren; Feild, Taylor S; Laffan, Shawn W; Lusk, Christopher H; Rossetto, Maurizio; Weston, Peter H

2014-12-01

• Have Gondwanan rainforest floral associations survived? Where do they occur today? Have they survived continuously in particular locations? How significant is their living floristic signal? We revisit these classic questions in light of significant recent increases in relevant paleobotanical data.• We traced the extinction and persistence of lineages and associations through the past across four now separated regions-Australia, New Zealand, Patagonia, and Antarctica-using fossil occurrence data from 63 well-dated Gondwanan rainforest sites and 396 constituent taxa. Fossil sites were allocated to four age groups: Cretaceous, Paleocene-Eocene, Neogene plus Oligocene, and Pleistocene. We compared the modern and ancient distributions of lineages represented in the fossil record to see if dissimilarity increased with time. We quantified similarity-dissimilarity of composition and taxonomic structure among fossil assemblages, and between fossil and modern assemblages.• Strong similarities between ancient Patagonia and Australia confirmed shared Gondwanan rainforest history, but more of the lineages persisted in Australia. Samples of ancient Australia grouped with the extant floras of Australia, New Guinea, New Caledonia, Fiji, and Mt. Kinabalu. Decreasing similarity through time among the regional floras of Antarctica, Patagonia, New Zealand, and southern Australia reflects multiple extinction events.• Gondwanan rainforest lineages contribute significantly to modern rainforest community assembly and often co-occur in widely separated assemblages far from their early fossil records. Understanding how and where lineages from ancient Gondwanan assemblages co-occur today has implications for the conservation of global rainforest vegetation, including in the Old World tropics. © 2014 Botanical Society of America, Inc.

Geographic patterns of ground-dwelling arthropods across an ecoregional transition in the north American Southwest

USGS Publications Warehouse

Lightfoot, D.C.; Brantley, S.L.; Allen, Craig D.

2008-01-01

We examined the biogeographic patterns of ground-dwelling arthropod communities across a heterogeneous semiarid region of the Southern Rio Grande Rift Valley of New Mexico. Our 3 sites included portions of 5 ecoregions, with the middle site a transition area where all ecoregions converged. We addressed the following 3 questions: (1) Do the species assemblage patterns for ground arthropods across habitats and sites conform to recognized ecoregions? (2) Are arthropod assemblages in distinct vegetation-defined habitats within an ecoregion more similar to each other or to assemblages in similar vegetation-defined habitats in other ecoregions? (3) Is there a detectable edge effect with increased arthropod diversity in the area of converging ecoregions? We encountered 442 target arthropod species from pitfall traps operating continuously for 7 years over a series of different habitats at each of the 3 sites. We examined geographic distributions of spider and cricket/grasshopper species in detail, and they showed affinities for different ecoregions, respectively. Each habitat within a study site supported a unique overall arthropod assemblage; nevertheless, different habitats at the same site were more similar to each other than they were to similar habitats at other sites. Overall arthropod species richness was greatest in the area where all 5 ecoregions converged. Arthropod species and their geographic distributions are poorly known relative to vascular plants and vertebrate animals. Findings from this research indicate that ecoregional classification is a useful tool for understanding biogeographic patterns among arthropods.

Cascading Effects of Ocean Acidification in a Rocky Subtidal Community

PubMed Central

Asnaghi, Valentina; Chiantore, Mariachiara; Mangialajo, Luisa; Gazeau, Frédéric; Francour, Patrice; Alliouane, Samir; Gattuso, Jean-Pierre

2013-01-01

Temperate marine rocky habitats may be alternatively characterized by well vegetated macroalgal assemblages or barren grounds, as a consequence of direct and indirect human impacts (e.g. overfishing) and grazing pressure by herbivorous organisms. In future scenarios of ocean acidification, calcifying organisms are expected to be less competitive: among these two key elements of the rocky subtidal food web, coralline algae and sea urchins. In order to highlight how the effects of increased pCO2 on individual calcifying species will be exacerbated by interactions with other trophic levels, we performed an experiment simultaneously testing ocean acidification effects on primary producers (calcifying and non-calcifying algae) and their grazers (sea urchins). Artificial communities, composed by juveniles of the sea urchin Paracentrotus lividus and calcifying (Corallina elongata) and non-calcifying (Cystoseira amentacea var stricta, Dictyota dichotoma) macroalgae, were subjected to pCO2 levels of 390, 550, 750 and 1000 µatm in the laboratory. Our study highlighted a direct pCO2 effect on coralline algae and on sea urchin defense from predation (test robustness). There was no direct effect on the non-calcifying macroalgae. More interestingly, we highlighted diet-mediated effects on test robustness and on the Aristotle's lantern size. In a future scenario of ocean acidification a decrease of sea urchins' density is expected, due to lower defense from predation, as a direct consequence of pH decrease, and to a reduced availability of calcifying macroalgae, important component of urchins' diet. The effects of ocean acidification may therefore be contrasting on well vegetated macroalgal assemblages and barren grounds: in the absence of other human impacts, a decrease of biodiversity can be predicted in vegetated macroalgal assemblages, whereas a lower density of sea urchin could help the recovery of shallow subtidal rocky areas affected by overfishing from barren grounds to assemblages dominated by fleshy macroalgae. PMID:23613994

Cascading effects of ocean acidification in a rocky subtidal community.

PubMed

Asnaghi, Valentina; Chiantore, Mariachiara; Mangialajo, Luisa; Gazeau, Frédéric; Francour, Patrice; Alliouane, Samir; Gattuso, Jean-Pierre

2013-01-01

Temperate marine rocky habitats may be alternatively characterized by well vegetated macroalgal assemblages or barren grounds, as a consequence of direct and indirect human impacts (e.g. overfishing) and grazing pressure by herbivorous organisms. In future scenarios of ocean acidification, calcifying organisms are expected to be less competitive: among these two key elements of the rocky subtidal food web, coralline algae and sea urchins. In order to highlight how the effects of increased pCO2 on individual calcifying species will be exacerbated by interactions with other trophic levels, we performed an experiment simultaneously testing ocean acidification effects on primary producers (calcifying and non-calcifying algae) and their grazers (sea urchins). Artificial communities, composed by juveniles of the sea urchin Paracentrotus lividus and calcifying (Corallina elongata) and non-calcifying (Cystoseira amentacea var stricta, Dictyota dichotoma) macroalgae, were subjected to pCO2 levels of 390, 550, 750 and 1000 µatm in the laboratory. Our study highlighted a direct pCO2 effect on coralline algae and on sea urchin defense from predation (test robustness). There was no direct effect on the non-calcifying macroalgae. More interestingly, we highlighted diet-mediated effects on test robustness and on the Aristotle's lantern size. In a future scenario of ocean acidification a decrease of sea urchins' density is expected, due to lower defense from predation, as a direct consequence of pH decrease, and to a reduced availability of calcifying macroalgae, important component of urchins' diet. The effects of ocean acidification may therefore be contrasting on well vegetated macroalgal assemblages and barren grounds: in the absence of other human impacts, a decrease of biodiversity can be predicted in vegetated macroalgal assemblages, whereas a lower density of sea urchin could help the recovery of shallow subtidal rocky areas affected by overfishing from barren grounds to assemblages dominated by fleshy macroalgae.

Investigating phenology of larval fishes in St. Louis River ...

EPA Pesticide Factsheets

As part of the development of an early detection monitoring strategy for non-native fishes, larval fish surveys have been conducted since 2012 in the St. Louis River estuary. Survey data demonstrates there is considerable variability in fish abundance and species assemblages across different habitats and at multiple temporal scales. To optimize early detection monitoring we need to understand temporal and spatial patterns of larval fishes related to their development and dispersion, as well as the environmental factors that influence them. In 2016 we designed an experiment to assess the phenological variability in larval fish abundance and assemblages amongst shallow water habitats. Specifically, we sought to contrast different thermal environments and turbidity levels, as well as assess the importance of vegetation in these habitats. To evaluate phenological differences we sampled larval fish bi-weekly at nine locations from mid-May to mid-July. Sampling locations were split between upper estuary and lower estuary to contrast river versus seiche influenced habitats. To assess differences in thermal environments, temperature was monitored every 15 minutes at each sampling location throughout the study, beginning in early April. Our design also included sampling at both vegetated (or pre-vegetated) and non-vegetated stations within each sampling location throughout the study to assess the importance of this habitat variable. Hydroacoustic surveys (Biosonics) were

Deforestation and benthic indicators: how much vegetation cover is needed to sustain healthy Andean streams?

PubMed

Iñiguez-Armijos, Carlos; Leiva, Adrián; Frede, Hans-Georg; Hampel, Henrietta; Breuer, Lutz

2014-01-01

Deforestation in the tropical Andes is affecting ecological conditions of streams, and determination of how much forest should be retained is a pressing task for conservation, restoration and management strategies. We calculated and analyzed eight benthic metrics (structural, compositional and water quality indices) and a physical-chemical composite index with gradients of vegetation cover to assess the effects of deforestation on macroinvertebrate communities and water quality of 23 streams in southern Ecuadorian Andes. Using a geographical information system (GIS), we quantified vegetation cover at three spatial scales: the entire catchment, the riparian buffer of 30 m width extending the entire stream length, and the local scale defined for a stream reach of 100 m in length and similar buffer width. Macroinvertebrate and water quality metrics had the strongest relationships with vegetation cover at catchment and riparian scales, while vegetation cover did not show any association with the macroinvertebrate metrics at local scale. At catchment scale, the water quality metrics indicate that ecological condition of Andean streams is good when vegetation cover is over 70%. Further, macroinvertebrate community assemblages were more diverse and related in catchments largely covered by native vegetation (>70%). Our results suggest that retaining an important quantity of native vegetation cover within the catchments and a linkage between headwater and riparian forests help to maintain and improve stream biodiversity and water quality in Andean streams affected by deforestation. This research proposes that a strong regulation focused to the management of riparian buffers can be successful when decision making is addressed to conservation/restoration of Andean catchments.

Deforestation and Benthic Indicators: How Much Vegetation Cover Is Needed to Sustain Healthy Andean Streams?

PubMed Central

Iñiguez–Armijos, Carlos; Leiva, Adrián; Frede, Hans–Georg; Hampel, Henrietta; Breuer, Lutz

2014-01-01

Deforestation in the tropical Andes is affecting ecological conditions of streams, and determination of how much forest should be retained is a pressing task for conservation, restoration and management strategies. We calculated and analyzed eight benthic metrics (structural, compositional and water quality indices) and a physical-chemical composite index with gradients of vegetation cover to assess the effects of deforestation on macroinvertebrate communities and water quality of 23 streams in southern Ecuadorian Andes. Using a geographical information system (GIS), we quantified vegetation cover at three spatial scales: the entire catchment, the riparian buffer of 30 m width extending the entire stream length, and the local scale defined for a stream reach of 100 m in length and similar buffer width. Macroinvertebrate and water quality metrics had the strongest relationships with vegetation cover at catchment and riparian scales, while vegetation cover did not show any association with the macroinvertebrate metrics at local scale. At catchment scale, the water quality metrics indicate that ecological condition of Andean streams is good when vegetation cover is over 70%. Further, macroinvertebrate community assemblages were more diverse and related in catchments largely covered by native vegetation (>70%). Our results suggest that retaining an important quantity of native vegetation cover within the catchments and a linkage between headwater and riparian forests help to maintain and improve stream biodiversity and water quality in Andean streams affected by deforestation. This research proposes that a strong regulation focused to the management of riparian buffers can be successful when decision making is addressed to conservation/restoration of Andean catchments. PMID:25147941

Habitat selection by breeding waterbirds at ponds with size-structured fish populations

NASA Astrophysics Data System (ADS)

Kloskowski, Janusz; Nieoczym, Marek; Polak, Marcin; Pitucha, Piotr

2010-07-01

Fish may significantly affect habitat use by birds, either as their prey or as competitors. Fish communities are often distinctly size-structured, but the consequences for waterbird assemblages remain poorly understood. We examined the effects of size structure of common carp ( Cyprinus carpio) cohorts together with other biotic and abiotic pond characteristics on the distribution of breeding waterbirds in a seminatural system of monocultured ponds, where three fish age classes were separately stocked. Fish age corresponded to a distinct fish size gradient. Fish age and total biomass, macroinvertebrate and amphibian abundance, and emergent vegetation best explained the differences in bird density between ponds. Abundance of animal prey other than fish (aquatic macroinvertebrates and larval amphibians) decreased with increasing carp age in the ponds. Densities of ducks and smaller grebes were strongly negatively associated with fish age/size gradient. The largest of the grebes, the piscivorous great crested grebe ( Podiceps cristatus), was the only species that preferred ponds with medium-sized fish and was positively associated with total fish biomass. Habitat selection by bitterns and most rallids was instead strongly influenced by the relative amount of emergent vegetation cover in the ponds. Our results show that fish size structure may be an important cue for breeding habitat choice and a factor affording an opportunity for niche diversification in avian communities.

USE OF ECOLOGICAL REGIONS IN AQUATIC ASSESSMENTS OF ECOLOGICAL CONDITION

EPA Science Inventory

Ecological regions are areas of similar climate, landform, soil, potential natural vegetation, hydrology, or other ecologically relevant variables. The makeup of aquatic biological assemblages (e.g., fish, macroinvertebrates, algae, riparian birds, etc.) varies dramatically over ...

Structure of Mesophotic Reef Fish Assemblages in the Northwestern Hawaiian Islands

PubMed Central

Kosaki, Randall K.; Wagner, Daniel; Kane, Corinne

2016-01-01

Mesophotic coral ecosystems (MCEs) support diverse communities of marine organisms with changes in community structure occurring along a depth gradient. In recent years, MCEs have gained attention due to their depths that provide protection from natural and anthropogenic stressors and their relative stability over evolutionary time periods, yet ecological structures of fish assemblages in MCEs remain largely un-documented. Here, we investigated composition and trophic structure of reef fish assemblages in the Northwestern Hawaiian Islands (NWHI) along a depth gradient from 1 to 67 m. The structure of reef fish assemblages as a whole showed a clear gradient from shallow to mesophotic depths. Fish assemblages at mesophotic depths had higher total densities than those in shallower waters, and were characterized by relatively high densities of planktivores and invertivores and relatively low densities of herbivores. Fishes that typified assemblages at mesophotic depths included six species that are endemic to the Hawaiian Islands. The present study showed that mesophotic reefs in the NWHI support unique assemblages of fish that are characterized by high endemism and relatively high densities of planktivores. Our findings underscore the ecological importance of these undersurveyed ecosystems and warrant further studies of MCEs. PMID:27383614

Geomorphometric correlations of vegetation cover properties and topographic karst features based on high-resolution LiDAR DTM of Aggtelek Karst, NE Hungary

NASA Astrophysics Data System (ADS)

Székely, Balázs; Telbisz, Tamás; Koma, Zsófia; Kelemen, Kristóf; Szmorad, Ferenc; Deák, Márton; Látos, Tamás; Standovár, Tibor

2015-04-01

Topography and lithology are two major factors influencing the vegetation cover, its mosaic pattern and lateral transitions. In karstic areas the topography has a high diversity, microtopographic landforms influence the local ecological setting, vegetation structure. Presence of sinkholes of various sizes and geometric arrangements causes rapid lateral variation of the slope, aspect patterns as well as highly modify the soil water balance in time and space. These diversity of factors defines a mosaicked habitat pattern for vegetation assemblages. The World Heritage Site Aggtelek Karst/Slovakian Karst Caves has characteristic natural and environmental properties concerning the geomorphological as well as the ecological values. In order to be able to study the topographic influence on the ecological setting, a high-resolution digital terrain model (DTM) and digital surface model (DSM) have been derived from airborne laser scanning data depicting the karstic micro- and macrotopographic Landscape elements and the envelope surface of the canopy. Additional vegetation parameters like closure and average height have been derived from a normalized digital surface model (nDSM). Extensive mapping of vegetation properties has been carried out: centered on points of a grid array several vegetation-specific data - including composition and structure of tree and shrub layers, herbacesous vegetation and tree regeneration - have been acquired. Various classification patterns - based on trees pecies composition, vertical vegetation structure - have been derived from this data set. The comparison of the vegetation classification data and the geomorphometric DTM derivatives yielded interesting results. Certain vegetation characteristics often correlate with the geomorphometric properties. We interpret this similarity as sensitivity of vegetion to fine-scale variations in geomorphic properties like aspect, illumination conditions and soil properties. However, in many cases the vegetation pattern shows no correlation with natural settings. It may be the result of human impact, which actively formed the local land use in these hilly-low mountain karst area since the Middle Ages. These studies have been financed partly by the following projects: data acquisition: "Hungarian-Slovakian Transnational Cooperation Programme 2007-2013", "Management of World Heritage Aggtelek Karst/Slovakian Karst Caves" (HUSK/1101/221/0180, Aggtelek NP), data evaluation: 'Multipurpose assessment serving forest biodiversity conservation in the Carpathian region of Hungary', Swiss-Hungarian Cooperation Programme (SH/4/13 Project), and Hungarian National Research Fund OTKA NK83400 and OTKA 104811. BS contributed as an Alexander von Humboldt Research Fellow, TT was supported by the János Bolyai Scolarship of the Hungarian Academy of Sciences.

DOE Office of Scientific and Technical Information (OSTI.GOV)

Jaramillo, C.A.; Pardo-Trujillo, A.; Rueda, M.

A palynological study of the Cerrejon Formation was conducted in order to date the formation and understand the floristic composition and diversity of a Paleocene tropical site. The Cerrejon Formation outcrops in the Cerrejon Coal Mine, the largest open cast coal mine in the world. Two cores (725 m) were provided by Carbones del Cerrejon LLC for study. Two hundred samples were prepared for palynology, and at least 150 palynomorphs were counted per sample where possible. Several statistical techniques including rarefaction, species accumulation curves, detrended correspondence analysis, and Anosim were used to analyze the floristic composition and diversity of themore » palynofloras. Palynomorph assemblages indicate that the age of the Cerrejon Formation and the overlying Tabaco Formation is Middle to Late Paleocene (ca. 60-58 Ma). Major structural repetitions were not found in the Cerrejon Formation in the Cerrejon coal mine, and there is little floral variation throughout. The floral composition, diversity, and lithofacies do not change significantly. Lithofacies associations and floral composition indicate deposition fluctuating from an estuarine-influenced coastal plain at the base to a fluvial-influenced coastal plain at the top. There are, however, significant differences in the composition and diversity of coal and siliciclastic samples. Coal palynofloras have fewer morphospecies, and a distinct and more homogeneous floral assemblage compared to assemblages from the intervening sisliciclastic strata, suggesting that tropical swampy environments supported fewer plant species and had a distinct vegetation adapted to permanently wet environments.« less

Temporal patterns of diversity: Assessing the biotic and abiotic controls on ant assemblages

USGS Publications Warehouse

Dunn, R.R.; Parker, C.R.; Sanders, N.J.

2007-01-01

In this study, we use 12 months of data from 11 ant assemblages to test whether seasonal variation in ant diversity is governed by either the structuring influences of interspecific competition or environmental conditions. Because the importance of competition might vary along environmental gradients, we also test whether the signature of competition depends on elevation. We find little evidence that competition structures the seasonal patterns of activity in the ant assemblages considered, but find support for the effects of temperature on seasonal patterns of diversity, especially at low-elevation sites. Although, in general, both competition and the environment interact to structure ant assemblages, our results suggest that environmental conditions are the primary force structuring the seasonal activity of the ant assemblages studied here. ?? 2007 The Linnean Society of London.

Historical changes in Nebraska's lotic fish assemblages: Implications of anthropogenic alterations

USGS Publications Warehouse

Smith, Christopher D.; Fischer, Jesse R.; Quist, Michael C.

2014-01-01

The plains of midwestern North America have undergone significant anthropogenic alterations following European settlement with consequent effects to lotic fish assemblage structure. We examined trends in fish assemblage structure and function in Nebraska's lotic systems using site-specific, presence-absence data from historical (1939–1940) and contemporary surveys (2003–2005; n  =  183). Shifts in fish assemblage structure were characterized by declines of specialist species (e.g., western silvery minnow Hybognathus argyritis) and increases in nonnative, sport, and generalist species (e.g., common carp Cyprinus carpio). Our research illustrates differences between historical and contemporary surveys for both taxonomic and functional metrics. Changes in fish assemblage structure were correlated with a contemporary measure of anthropogenic alteration (Human Threat Index; HTI) and were most pronounced for large-scale threats (i.e., watershed HTI, overall HTI). The HTI is a composite index of cumulative anthropogenic alterations experienced by a stream system and was used to investigate broad-scale implications of anthropogenic activity on fish assemblage structure. Fish assemblages among sites were more similar in contemporary surveys than in historical surveys, such changes might indicate a homogenization of the fish assemblages. Losses of native species and increases in introduced species have occurred in Nebraska's lotic systems across a broad temporal span and shifts are likely related to high levels of human perturbation.

Conspecific and Heterospecific Plant Densities at Small-Scale Can Drive Plant-Pollinator Interactions

PubMed Central

Janovský, Zdeněk; Mikát, Michael; Hadrava, Jiří; Horčičková, Eva; Kmecová, Kateřina; Požárová, Doubravka; Smyčka, Jan; Herben, Tomáš

2013-01-01

Generalist pollinators are important in many habitats, but little research has been done on small-scale spatial variation in interactions between them and the plants that they visit. Here, using a spatially explicit approach, we examined whether multiple species of flowering plants occurring within a single meadow showed spatial structure in their generalist pollinator assemblages. We report the results for eight plant species for which at least 200 individual visits were recorded. We found that for all of these species, the proportions of their general pollinator assemblages accounted for by particular functional groups showed spatial heterogeneity at the scale of tens of metres. This heterogeneity was connected either with no or only subtle changes of vegetation and flowering species composition. In five of these species, differences in conspecific plant density influenced the pollinator communities (with greater dominance of main pollinators at low-conspecific plant densities). The density of heterospecific plant individuals influenced the pollinator spectrum in one case. Our results indicate that the picture of plant-pollinator interactions provided by averaging data within large plots may be misleading and that within-site spatial heterogeneity should be accounted for in terms of sampling effort allocation and analysis. Moreover, spatially structured plant-pollinator interactions may have important ecological and evolutionary consequences, especially for plant population biology. PMID:24204818

Effects of future climate change, CO2 enrichment, and vegetation structure variation on hydrological processes in China

USGS Publications Warehouse

Zhu, Qiuan; Jiang, Hong; Peng, Changhui; Liu, Jinxun; Fang, Xiuqin; Wei, Xiaohua; Liu, Shirong; Zhou, Guomo

2012-01-01

Investigating the relationship between factors (climate change, atmospheric CO2 concentrations enrichment, and vegetation structure) and hydrological processes is important for understanding and predicting the interaction between the hydrosphere and biosphere. The Integrated Biosphere Simulator (IBIS) was used to evaluate the effects of climate change, rising CO2, and vegetation structure on hydrological processes in China at the end of the 21st century. Seven simulations were implemented using the assemblage of the IPCC climate and CO2 concentration scenarios, SRES A2 and SRES B1. Analysis results suggest that (1) climate change will have increasing effects on runoff, evapotranspiration (ET), transpiration (T), and transpiration ratio (transpiration/evapotranspiration, T/E) in most hydrological regions of China except in the southernmost regions; (2) elevated CO2 concentrations will have increasing effects on runoff at the national scale, but at the hydrological region scale, the physiology effects induced by elevated CO2 concentration will depend on the vegetation types, climate conditions, and geographical background information with noticeable decreasing effects shown in the arid Inland region of China; (3) leaf area index (LAI) compensation effect and stomatal closure effect are the dominant factors on runoff in the arid Inland region and southern moist hydrological regions, respectively; (4) the magnitudes of climate change (especially the changing precipitation pattern) effects on the water cycle are much larger than those of the elevated CO2 concentration effects; however, increasing CO2 concentration will be one of the most important modifiers to the water cycle; (5) the water resource condition will be improved in northern China but depressed in southernmost China under the IPCC climate change scenarios, SRES A2 and SRES B1.

Comparative analysis of different survey methods for monitoring fish assemblages in coastal habitats.

PubMed

Baker, Duncan G L; Eddy, Tyler D; McIver, Reba; Schmidt, Allison L; Thériault, Marie-Hélène; Boudreau, Monica; Courtenay, Simon C; Lotze, Heike K

2016-01-01

Coastal ecosystems are among the most productive yet increasingly threatened marine ecosystems worldwide. Particularly vegetated habitats, such as eelgrass (Zostera marina) beds, play important roles in providing key spawning, nursery and foraging habitats for a wide range of fauna. To properly assess changes in coastal ecosystems and manage these critical habitats, it is essential to develop sound monitoring programs for foundation species and associated assemblages. Several survey methods exist, thus understanding how different methods perform is important for survey selection. We compared two common methods for surveying macrofaunal assemblages: beach seine netting and underwater visual census (UVC). We also tested whether assemblages in shallow nearshore habitats commonly sampled by beach seines are similar to those of nearby eelgrass beds often sampled by UVC. Among five estuaries along the Southern Gulf of St. Lawrence, Canada, our results suggest that the two survey methods yield comparable results for species richness, diversity and evenness, yet beach seines yield significantly higher abundance and different species composition. However, sampling nearshore assemblages does not represent those in eelgrass beds despite considerable overlap and close proximity. These results have important implications for how and where macrofaunal assemblages are monitored in coastal ecosystems. Ideally, multiple survey methods and locations should be combined to complement each other in assessing the entire assemblage and full range of changes in coastal ecosystems, thereby better informing coastal zone management.

Efficiency of snake sampling methods in the Brazilian semiarid region.

PubMed

Mesquita, Paula C M D; Passos, Daniel C; Cechin, Sonia Z

2013-09-01

The choice of sampling methods is a crucial step in every field survey in herpetology. In countries where time and financial support are limited, the choice of the methods is critical. The methods used to sample snakes often lack objective criteria, and the traditional methods have apparently been more important when making the choice. Consequently researches using not-standardized methods are frequently found in the literature. We have compared four commonly used methods for sampling snake assemblages in a semiarid area in Brazil. We compared the efficacy of each method based on the cost-benefit regarding the number of individuals and species captured, time, and financial investment. We found that pitfall traps were the less effective method in all aspects that were evaluated and it was not complementary to the other methods in terms of abundance of species and assemblage structure. We conclude that methods can only be considered complementary if they are standardized to the objectives of the study. The use of pitfall traps in short-term surveys of the snake fauna in areas with shrubby vegetation and stony soil is not recommended.

Vegetation change and pollen geochronology from the Atlantic Coast of the United States during the last Millennium

NASA Astrophysics Data System (ADS)

Christie, M.; Bernhardt, C. E.; Clear, J.; Corbett, D. R.; Horton, B.

2017-12-01

Vegetation changes related to anthropogenic and climatic change have been reconstructed at many locations. Synthesizing observations from multiple locations improves our understanding of the regionality of these impacts and drivers. Human alterations to the plant communities vary spatially in timing and impact. For example, deforestation occurred at different times, rates, and magnitudes along the Atlantic Coast of the United States, while of the introduction of non-native plants into ecosystems varies by region. Gradual climate shifts cause the appearance of migration in sensitive plants, so climate-related transitions can be traced from one location to another. Here, we combine new and published pollen data from Florida to Connecticut to produce a regional synthesis of vegetation changes for the last 1000 years. We have produced detailed reconstructions of vegetation changes in response to anthropogenic and climatic forcing. Our database contains pollen assemblages from more than 10 locations along the Atlantic coast of the United States, including new reconstructions from the Florida Keys, Delaware Estuary, and northern New Jersey. All pollen assemblages are placed in a geochronological framework with as fine as decadal resolution using composite chronologies of radiocarbon, pollution histories and cesium isotopes. Anthropogenic impacts, including deforestation from European settlement and the introduction of non-native plants, are observed in the pollen record and serve as useful markers of time. For example, the abrupt increase in Ambrosia pollen in the mid-Atlantic corresponds to 18th Century deforestation. Climate transitions that can be seen in the pollen record during the last millennium include the Medieval Climate Optimum, Little Ice Age, and human-induced warming following industrialization in the 20th century. Plant communities of the United States Atlantic Coast adapted to the evolving climate. For example, Picea and Tsuga are indicative of cooler, moister conditions and disappear from regions as conditions become warmer or drier. We combine the various histories of vegetation change from pollen assemblages into a single source for researchers to use when attempting to understand geochronology and impacts of climate change along the Atlantic coast of the United States.

Diversity, abundance, and size structure of bivalve assemblages in the Sipsey River, Alabama

Treesearch

Wendell R. Haag; Melvin L. Jr. Warren

2010-01-01

1. Patterns of mussel diversity and assemblage structure in the Sipsey River, Alabama, are described. Qualitative data were used to describe river-wide patterns of diversity. Quantitative data were used to describe the structure of mussel assemblages at several sites based on whole-substrate sampling that ensured all size classes were detected. 2. Major human impacts...

Effects of disturbance associated with seismic exploration for oil and gas reserves in coastal marshes

USGS Publications Warehouse

Howard, Rebecca J.; Wells, Christopher J.; Michot, Thomas C.; Johnson, Darren J.

2014-01-01

Anthropogenic disturbances in wetland ecosystems can alter the composition and structure of plant assemblages and affect system functions. Extensive oil and gas extraction has occurred in wetland habitats along the northern Gulf of Mexico coast since the early 1900s. Activities involved with three-dimensional (3D) seismic exploration for these resources cause various disturbances to vegetation and soils. We documented the impact of a 3D seismic survey in coastal marshes in Louisiana, USA, along transects established before exploration began. Two semi-impounded marshes dominated by Spartina patens were in the area surveyed. Vegetation, soil, and water physicochemical data were collected before the survey, about 6 weeks following its completion, and every 3 months thereafter for 2 years. Soil cores for seed bank emergence experiments were also collected. Maximum vegetation height at impact sites was reduced in both marshes 6 weeks following the survey. In one marsh, total vegetation cover was also reduced, and dead vegetation cover increased, at impact sites 6 weeks after the survey. These effects, however, did not persist 3 months later. No effects on soil or water properties were identified. The total number of seeds that germinated during greenhouse studies increased at impact sites 5 months following the survey in both marshes. Although some seed bank effects persisted 1 year, these effects were not reflected in standing vegetation. The marshes studied were therefore resilient to the impacts resulting from 3D seismic exploration because vegetation responses were short term in that they could not be identified a few months following survey completion.

Effects of Disturbance Associated With Seismic Exploration for Oil and Gas Reserves in Coastal Marshes

NASA Astrophysics Data System (ADS)

Howard, Rebecca J.; Wells, Christopher J.; Michot, Thomas C.; Johnson, Darren J.

2014-07-01

Anthropogenic disturbances in wetland ecosystems can alter the composition and structure of plant assemblages and affect system functions. Extensive oil and gas extraction has occurred in wetland habitats along the northern Gulf of Mexico coast since the early 1900s. Activities involved with three-dimensional (3D) seismic exploration for these resources cause various disturbances to vegetation and soils. We documented the impact of a 3D seismic survey in coastal marshes in Louisiana, USA, along transects established before exploration began. Two semi-impounded marshes dominated by Spartina patens were in the area surveyed. Vegetation, soil, and water physicochemical data were collected before the survey, about 6 weeks following its completion, and every 3 months thereafter for 2 years. Soil cores for seed bank emergence experiments were also collected. Maximum vegetation height at impact sites was reduced in both marshes 6 weeks following the survey. In one marsh, total vegetation cover was also reduced, and dead vegetation cover increased, at impact sites 6 weeks after the survey. These effects, however, did not persist 3 months later. No effects on soil or water properties were identified. The total number of seeds that germinated during greenhouse studies increased at impact sites 5 months following the survey in both marshes. Although some seed bank effects persisted 1 year, these effects were not reflected in standing vegetation. The marshes studied were therefore resilient to the impacts resulting from 3D seismic exploration because vegetation responses were short term in that they could not be identified a few months following survey completion.

Effects of disturbance associated with seismic exploration for oil and gas reserves in coastal marshes.

PubMed

Howard, Rebecca J; Wells, Christopher J; Michot, Thomas C; Johnson, Darren J

2014-07-01

Anthropogenic disturbances in wetland ecosystems can alter the composition and structure of plant assemblages and affect system functions. Extensive oil and gas extraction has occurred in wetland habitats along the northern Gulf of Mexico coast since the early 1900s. Activities involved with three-dimensional (3D) seismic exploration for these resources cause various disturbances to vegetation and soils. We documented the impact of a 3D seismic survey in coastal marshes in Louisiana, USA, along transects established before exploration began. Two semi-impounded marshes dominated by Spartina patens were in the area surveyed. Vegetation, soil, and water physicochemical data were collected before the survey, about 6 weeks following its completion, and every 3 months thereafter for 2 years. Soil cores for seed bank emergence experiments were also collected. Maximum vegetation height at impact sites was reduced in both marshes 6 weeks following the survey. In one marsh, total vegetation cover was also reduced, and dead vegetation cover increased, at impact sites 6 weeks after the survey. These effects, however, did not persist 3 months later. No effects on soil or water properties were identified. The total number of seeds that germinated during greenhouse studies increased at impact sites 5 months following the survey in both marshes. Although some seed bank effects persisted 1 year, these effects were not reflected in standing vegetation. The marshes studied were therefore resilient to the impacts resulting from 3D seismic exploration because vegetation responses were short term in that they could not be identified a few months following survey completion.

Ancient charcoal as a natural archive for paleofire regime and vegetation change in the Mayumbe, Democratic Republic of the Congo

NASA Astrophysics Data System (ADS)

Hubau, Wannes; Van den Bulcke, Jan; Kitin, Peter; Mees, Florias; Baert, Geert; Verschuren, Dirk; Nsenga, Laurent; Van Acker, Joris; Beeckman, Hans

2013-09-01

Charcoal was sampled in four soil profiles at the Mayumbe forest boundary (DRC). Five fire events were recorded and 44 charcoal types were identified. One stratified profile yielded charcoal assemblages around 530 cal yr BP and > 43.5 cal ka BP in age. The oldest assemblage precedes the period of recorded anthropogenic burning, illustrating occasional long-term absence of fire but also natural wildfire occurrences within tropical rainforest. No other charcoal assemblages older than 2500 cal yr BP were recorded, perhaps due to bioturbation and colluvial reworking. The recorded paleofires were possibly associated with short-lived climate anomalies. Progressively dry climatic conditions since ca. 4000 cal yr BP onward did not promote paleofire occurrence until increasing seasonality affected vegetation at the end of the third millennium BP, as illustrated by a fire occurring in mature rainforest that persisted until around 2050 cal yr BP. During a drought episode coinciding with the 'Medieval Climate Anomaly', mature rainforest was locally replaced by woodland savanna. Charcoal remains from pioneer forest indicate that fire hampered forest regeneration after climatic drought episodes. The presence of pottery shards and oil-palm endocarps associated with two relatively recent paleofires suggests that the effects of climate variability were amplified by human activities.

Establishing a baseline of estuarine submerged aquatic vegetation resources across salinity zones within coastal areas of the northern Gulf of Mexico

USGS Publications Warehouse

Hillmann, Eva R.; DeMarco, Kristin; LaPeyre, Megan K.

2016-01-01

Coastal ecosystems are dynamic and productive areas that are vulnerable to effects of global climate change. Despite their potentially limited spatial extent, submerged aquatic vegetation (SAV) beds function in coastal ecosystems as foundation species, and perform important ecological services. However, limited understanding of the factors controlling SAV distribution and abundance across multiple salinity zones (fresh, intermediate, brackish, and saline) in the northern Gulf of Mexico restricts the ability of models to accurately predict resource availability. We sampled 384 potential coastal SAV sites across the northern Gulf of Mexico in 2013 and 2014, and examined community and species-specific SAV distribution and biomass in relation to year, salinity, turbidity, and water depth. After two years of sampling, 14 species of SAV were documented, with three species (coontail [Ceratophyllum demersum], Eurasian watermilfoil [Myriophyllum spicatum], and widgeon grass [Ruppia maritima]) accounting for 54% of above-ground biomass collected. Salinity and water depth were dominant drivers of species assemblages but had little effect on SAV biomass. Predicted changes in salinity and water depths along the northern Gulf of Mexico coast will likely alter SAV production and species assemblages, shifting to more saline and depth-tolerant assemblages, which in turn may affect habitat and food resources for associated faunal species.

Direct versus indirect climate controls on Holocene diatom assemblages in a sub-tropical deep, alpine lake (Lugu Hu, Yunnan, SW China)

NASA Astrophysics Data System (ADS)

Wang, Qian; Yang, Xiangdong; Anderson, Nicholas John; Dong, Xuhui

2016-07-01

The reconstruction of Holocene environmental changes in lakes on the plateau region of southwest China provides an understanding of how these ecosystems may respond to climate change. Fossil diatom assemblages were investigated from an 11,000-year lake sediment core from a deep, alpine lake (Lugu Hu) in southwest China, an area strongly influenced by the southwest (or the Indian) summer monsoon. Changes in diatom assemblage composition, notably the abundance of the two dominant planktonic species, Cyclotella rhomboideo-elliptica and Cyclostephanos dubius, reflect the effects of climate variability on nutrient dynamics, mediated via thermal stratification (internal nutrient cycling) and catchment-vegetation processes. Statistical analyses of the climate-diatom interactions highlight the strong effect of changing orbitally-induced solar radiation during the Holocene, presumably via its effect on the lake's thermal budget. In a partial redundancy analysis, climate (solar insolation) and proxies reflecting catchment process (pollen percentages, C/N ratio) were the most important drivers of diatom ecological change, showing the strong effects of climate-catchment-vegetation interactions on lake functioning. This diatom record reflects long-term ontogeny of the lake-catchment ecosystem and suggests that climatic changes (both temperature and precipitation) impact lake ecology indirectly through shifts in thermal stratification and catchment nutrient exports.

A novel method to analyze social transmission in chronologically sequenced assemblages, implemented on cultural inheritance of the art of cooking.

PubMed

Isaksson, Sven; Funcke, Alexander; Envall, Ida; Enquist, Magnus; Lindenfors, Patrik

2015-01-01

Here we present an analytical technique for the measurement and evaluation of changes in chronologically sequenced assemblages. To illustrate the method, we studied the cultural evolution of European cooking as revealed in seven cook books dispersed over the past 800 years. We investigated if changes in the set of commonly used ingredients were mainly gradual or subject to fashion fluctuations. Applying our method to the data from the cook books revealed that overall, there is a clear continuity in cooking over the ages--cooking is knowledge that is passed down through generations, not something (re-)invented by each generation on its own. Looking at three main categories of ingredients separately (spices, animal products and vegetables), however, disclosed that all ingredients do not change according to the same pattern. While choice of animal products was very conservative, changing completely sequentially, changes in the choices of spices, but also of vegetables, were more unbounded. We hypothesize that this may be due a combination of fashion fluctuations and changes in availability due to contact with the Americas during our study time period. The presented method is also usable on other assemblage type data, and can thus be of utility for analyzing sequential archaeological data from the same area or other similarly organized material.

Photosynthetic epibionts and endobionts of Pacific oyster shells from oyster reefs in rocky versus mudflat shores.

PubMed

Barillé, Laurent; Le Bris, Anthony; Méléder, Vona; Launeau, Patrick; Robin, Marc; Louvrou, Ioanna; Ribeiro, Lourenço

2017-01-01

The Pacific oyster, Crassostrea gigas (Thunberg), is the main bivalve species cultivated in the world. With global warming enabling its reproduction and larval survival at higher latitudes, this species is now recognized as invasive and creates wild oyster reefs globally. In this study, the spatial distribution of photosynthetic assemblages colonizing the shells of wild C. gigas was investigated on both a large scale (two contrasting types of reefs found in mudflats and rocky areas) and a small scale (within individual shells) using a hyperspectral imager. The microspatial distribution of all phototrophs was obtained by mapping the Normalized Difference Vegetation Index (NDVI). Second derivative (δδ) analyses of hyperspectral images at 462, 524, 571 and 647 nm were subsequently applied to map diatoms, cyanobacteria, rhodophytes and chlorophytes, respectively. A concomitant pigment analysis was carried out by high performance liquid chromatography and completed by taxonomic observations. This study showed that there was high microalgal diversity associated with wild oyster shells and that there were differences in the structure of the phototropic assemblages depending on the type of reef. Namely, vertically-growing oysters in mudflat areas had a higher biomass of epizoic diatoms (hyperspectral proxy at δδ462 nm) and were mainly colonized by species of the genera Navicula, Nitzschia and Hippodonta, which are epipelic or motile epipsammic. The assemblages on the horizontal oysters contained more tychoplanktonic diatoms (e.g. Thalassiosira pseudonana, T. proschkinae and Plagiogrammopsis vanheurckii). Three species of boring cyanobacteria were observed for both types of reef: Mastigocoleus testarum, Leptolyngbya terrebrans, and Hyella caespistosa, but the second derivative analysis at 524 nm showed a significantly higher biomass for the horizontally-growing oysters. There was no biomass difference for the boring chlorophyte assemblages (δδ647 nm), with two species: Eugomontia testarum and Ostreobium quekettii observed for both types of reef. This study shows that oyster shells are an idiosyncratic but ubiquitous habitat for phototrophic assemblages. The contribution of these assemblages in terms of biomass and production to the functioning of coastal areas, and particularly to shellfish ecosystems, remains to be evaluated.

Photosynthetic epibionts and endobionts of Pacific oyster shells from oyster reefs in rocky versus mudflat shores

PubMed Central

Le Bris, Anthony; Méléder, Vona; Launeau, Patrick; Robin, Marc; Louvrou, Ioanna; Ribeiro, Lourenço

2017-01-01

The Pacific oyster, Crassostrea gigas (Thunberg), is the main bivalve species cultivated in the world. With global warming enabling its reproduction and larval survival at higher latitudes, this species is now recognized as invasive and creates wild oyster reefs globally. In this study, the spatial distribution of photosynthetic assemblages colonizing the shells of wild C. gigas was investigated on both a large scale (two contrasting types of reefs found in mudflats and rocky areas) and a small scale (within individual shells) using a hyperspectral imager. The microspatial distribution of all phototrophs was obtained by mapping the Normalized Difference Vegetation Index (NDVI). Second derivative (δδ) analyses of hyperspectral images at 462, 524, 571 and 647 nm were subsequently applied to map diatoms, cyanobacteria, rhodophytes and chlorophytes, respectively. A concomitant pigment analysis was carried out by high performance liquid chromatography and completed by taxonomic observations. This study showed that there was high microalgal diversity associated with wild oyster shells and that there were differences in the structure of the phototropic assemblages depending on the type of reef. Namely, vertically-growing oysters in mudflat areas had a higher biomass of epizoic diatoms (hyperspectral proxy at δδ462 nm) and were mainly colonized by species of the genera Navicula, Nitzschia and Hippodonta, which are epipelic or motile epipsammic. The assemblages on the horizontal oysters contained more tychoplanktonic diatoms (e.g. Thalassiosira pseudonana, T. proschkinae and Plagiogrammopsis vanheurckii). Three species of boring cyanobacteria were observed for both types of reef: Mastigocoleus testarum, Leptolyngbya terrebrans, and Hyella caespistosa, but the second derivative analysis at 524 nm showed a significantly higher biomass for the horizontally-growing oysters. There was no biomass difference for the boring chlorophyte assemblages (δδ647 nm), with two species: Eugomontia testarum and Ostreobium quekettii observed for both types of reef. This study shows that oyster shells are an idiosyncratic but ubiquitous habitat for phototrophic assemblages. The contribution of these assemblages in terms of biomass and production to the functioning of coastal areas, and particularly to shellfish ecosystems, remains to be evaluated. PMID:28934317

Magnetic minerals in soils across the forest-prairie ecotone in NW Minnesota

NASA Astrophysics Data System (ADS)

Maxbauer, D.; Feinberg, J. M.; Fox, D. L.; Nater, E. A.

2016-12-01

Soil pedogenesis results in a complex assemblage of iron oxide minerals that can be disentangled successfully using sensitive magnetic techniques to better delineate specific soil processes. Here, we evaluate the variability in soil processes within forest, prairie, and transitional soils along an 11 km transect of anthropogenically unaltered soils that span the forest-to-prairie ecotone in NW Minnesota. All soils in this study developed on relatively uniform topography, similar glacial till parent material, under a uniform climate, and presumably over similar time intervals. The forest-to-prairie transition zone in this region is controlled by naturally occurring fires, affording the opportunity to evaluate differences in soil processes related to vegetation (forest versus prairie) and burning (prairie and transitional soils). Results suggest that the pedeogenic fraction of magnetite/maghemite in soils is similar in all specimens and is independent of soil type, vegetation, and any effects of burning. Magnetically enhanced horizons have 45% of remanence held by a low-coercivity pedogenic component (likely magnetite/maghemite) regardless of vegetation cover and soil type. Enhancement ratios for magnetic susceptibility and low-field remanences, often used as indicators of pedogenic magnetic minerals, are more variable but remain statistically equivalent across the transect. These results support the hypothesis that pedogenic magnetic minerals in soils mostly reflect ambient climatic conditions regardless of the variability in soil processes related to vegetation and soil type. The non-pedogenic magnetic mineral assemblage shows clear distinctions between the forest, prairie, and transitional soils in hysteresis properties (remanence and coercivity ratios; Mr/Ms and Bc/Bcr, respectively), suggesting that variable processes in these settings influence the local magnetic mineral assemblage, and that it may be possible to use magnetic minerals in paleosols to constrain these processes. This work highlights the importance of isolating the magnetic behavior of pedogenic and non-pedogenic minerals in environmental magnetism studies in order to provide the most rigorous interpretation of past environmental conditions.

Tropical Secondary Forest Management Influences Frugivorous Bat Composition, Abundance and Fruit Consumption in Chiapas, Mexico

PubMed Central

Vleut, Ivar; Levy-Tacher, Samuel Israel; de Boer, Willem Frederik; Galindo-González, Jorge; Vazquez, Luis-Bernardo

2013-01-01

Most studies on frugivorous bat assemblages in secondary forests have concentrated on differences among successional stages, and have disregarded the effect of forest management. Secondary forest management practices alter the vegetation structure and fruit availability, important factors associated with differences in frugivorous bat assemblage structure, and fruit consumption and can therefore modify forest succession. Our objective was to elucidate factors (forest structural variables and fruit availability) determining bat diversity, abundance, composition and species-specific abundance of bats in (i) secondary forests managed by Lacandon farmers dominated by Ochroma pyramidale, in (ii) secondary forests without management, and in (iii) mature rain forests in Chiapas, Southern Mexico. Frugivorous bat species diversity (Shannon H’) was similar between forest types. However, bat abundance was highest in rain forest and O. pyramidale forests. Bat species composition was different among forest types with more Carollia sowelli and Sturnira lilium captures in O. pyramidale forests. Overall, bat fruit consumption was dominated by early-successional shrubs, highest late-successional fruit consumption was found in rain forests and more bats consumed early-successional shrub fruits in O. pyramidale forests. Ochroma pyramidale forests presented a higher canopy openness, tree height, lower tree density and diversity of fruit than secondary forests. Tree density and canopy openness were negatively correlated with bat species diversity and bat abundance, but bat abundance increased with fruit abundance and tree height. Hence, secondary forest management alters forests’ structural characteristics and resource availability, and shapes the frugivorous bat community structure, and thereby the fruit consumption by bats. PMID:24147029

Tropical secondary forest management influences frugivorous bat composition, abundance and fruit consumption in Chiapas, Mexico.

PubMed

Vleut, Ivar; Levy-Tacher, Samuel Israel; de Boer, Willem Frederik; Galindo-González, Jorge; Vazquez, Luis-Bernardo

2013-01-01

Most studies on frugivorous bat assemblages in secondary forests have concentrated on differences among successional stages, and have disregarded the effect of forest management. Secondary forest management practices alter the vegetation structure and fruit availability, important factors associated with differences in frugivorous bat assemblage structure, and fruit consumption and can therefore modify forest succession. Our objective was to elucidate factors (forest structural variables and fruit availability) determining bat diversity, abundance, composition and species-specific abundance of bats in (i) secondary forests managed by Lacandon farmers dominated by Ochroma pyramidale, in (ii) secondary forests without management, and in (iii) mature rain forests in Chiapas, Southern Mexico. Frugivorous bat species diversity (Shannon H') was similar between forest types. However, bat abundance was highest in rain forest and O. pyramidale forests. Bat species composition was different among forest types with more Carollia sowelli and Sturnira lilium captures in O. pyramidale forests. Overall, bat fruit consumption was dominated by early-successional shrubs, highest late-successional fruit consumption was found in rain forests and more bats consumed early-successional shrub fruits in O. pyramidale forests. Ochroma pyramidale forests presented a higher canopy openness, tree height, lower tree density and diversity of fruit than secondary forests. Tree density and canopy openness were negatively correlated with bat species diversity and bat abundance, but bat abundance increased with fruit abundance and tree height. Hence, secondary forest management alters forests' structural characteristics and resource availability, and shapes the frugivorous bat community structure, and thereby the fruit consumption by bats.

Evaluation of aquatic biota in relation to environmental characteristics measured at multiple scales in agricultural streams of the Midwest, 1993-2004

USGS Publications Warehouse

Hambrook Berkman, Julie A.; Scudder, Barbara C.; Lutz, Michelle A.; Harris, Mitchell A.

2010-01-01

This study evaluated the relations between algal, invertebrate, and fish assemblages and physical environmental characteristics of streams at the reach, segment, and watershed scale in agricultural settings in the Midwest. The 86 stream sites selected for study were in predominantly agricultural watersheds sampled as part of the U.S. Geological Survey's National Water-Quality Assessment Program. Species abundance and over 130 biological metrics were used to determine which aspects of the assemblages were most sensitive to change at the three spatial scales. Digital orthophotograph-based riparian land use/land cover was used for analyses of riparian conditions at the reach and segment scales. The percentage area of different land-use/land-cover types was also determined for each watershed. Out of over 230 environmental characteristics examined, those that best explained variation in the biotic assemblages at each spatial scale include the following: 1) reach: bank vegetative cover, fine silty substrate, and open canopy angle; 2) segment: woody vegetation and cropland in the 250-m riparian buffer, and average length of undisturbed buffer; and 3) watershed: land use/land cover (both total forested and row crop), low-permeability soils, slope, drainage area, and latitude. All three biological assemblages, especially fish, correlated more with land use/land cover and other physical characteristics at the watershed scale than at the reach or segment scales. This study identifies biotic measures that can be used to evaluate potential improvements resulting from agricultural best-management practices and other conservation efforts, as well as evaluate potential impairment from urban development or other disturbances.

The plant component of an Acheulian diet at Gesher Benot Ya‘aqov, Israel

PubMed Central

Melamed, Yoel; Kislev, Mordechai E.; Geffen, Eli; Lev-Yadun, Simcha; Goren-Inbar, Naama

2016-01-01

Diet is central for understanding hominin evolution, adaptation, and environmental exploitation, but Paleolithic plant remains are scarce. A unique macrobotanical assemblage of 55 food plant taxa from the Acheulian site of Gesher Benot Ya‘aqov, Israel includes seeds, fruits, nuts, vegetables, and plants producing underground storage organs. The food plant remains were part of a diet that also included aquatic and terrestrial fauna. This diverse assemblage, 780,000 y old, reflects a varied plant diet, staple plant foods, environmental knowledge, seasonality, and the use of fire in food processing. It provides insight into the wide spectrum of the diet of mid-Pleistocene hominins, enhancing our understanding of their adaptation from the perspective of subsistence. Our results shed light on hominin abilities to adjust to new environments, facilitating population diffusion and colonization beyond Africa. We reconstruct the major vegetal foodstuffs, while considering the possibility of some detoxification by fire. The site, located in the Levantine Corridor through which several hominin waves dispersed out of Africa, provides a unique opportunity to study mid-Pleistocene vegetal diet and is crucial for understanding subsistence aspects of hominin dispersal and the transition from an African-based to a Eurasian diet. PMID:27930293

The plant component of an Acheulian diet at Gesher Benot Ya'aqov, Israel.

PubMed

Melamed, Yoel; Kislev, Mordechai E; Geffen, Eli; Lev-Yadun, Simcha; Goren-Inbar, Naama

2016-12-20

Diet is central for understanding hominin evolution, adaptation, and environmental exploitation, but Paleolithic plant remains are scarce. A unique macrobotanical assemblage of 55 food plant taxa from the Acheulian site of Gesher Benot Ya'aqov, Israel includes seeds, fruits, nuts, vegetables, and plants producing underground storage organs. The food plant remains were part of a diet that also included aquatic and terrestrial fauna. This diverse assemblage, 780,000 y old, reflects a varied plant diet, staple plant foods, environmental knowledge, seasonality, and the use of fire in food processing. It provides insight into the wide spectrum of the diet of mid-Pleistocene hominins, enhancing our understanding of their adaptation from the perspective of subsistence. Our results shed light on hominin abilities to adjust to new environments, facilitating population diffusion and colonization beyond Africa. We reconstruct the major vegetal foodstuffs, while considering the possibility of some detoxification by fire. The site, located in the Levantine Corridor through which several hominin waves dispersed out of Africa, provides a unique opportunity to study mid-Pleistocene vegetal diet and is crucial for understanding subsistence aspects of hominin dispersal and the transition from an African-based to a Eurasian diet.

Spatially dependent responses of a large-river fish assemblage to bank stabilization and side channels

USGS Publications Warehouse

Reinhold, Ann Marie; Bramblett, Robert G.; Zale, Alexander V.; Poole, Geoffrey C.; Roberts, David W.

2017-01-01

The alteration of rivers by anthropogenic bank stabilization to prevent the erosion of economically valuable lands and structures has become commonplace. However, such alteration has ambiguous consequences for fish assemblages, especially in large rivers. Because most large, temperate rivers have impoundments, it can be difficult to separate the influences of bank stabilization structures from those of main-stem impoundments, especially because both stabilization structures and impoundments can cause side-channel loss. Few large rivers are free flowing and retain extensive side channels, but the Yellowstone River (our study area) is one such river. We hypothesized that in this river (1) bank stabilization has changed fish assemblage structure by altering habitats, (2) side-channel availability has influenced fish assemblage structure by providing habitat heterogeneity, and (3) the influences of bank stabilization and side channels on fish assemblages were spatially scale dependent. We developed a spatially explicit framework to test these hypotheses. Fish assemblage structure varied with the extent of bank stabilization and the availability of side channels; however, not all assemblage subsets were influenced. Nevertheless, bank stabilization and side channels had different and sometimes opposite influences on the fish assemblage. The effects of side channels on fish were more consistent and widespread than those of bank stabilization; the catches of more fishes were positively correlated with side-channel availability than with the extent of bank stabilization. The influences of bank stabilization and side channels on the relative abundances of fish also varied, depending on species and river bend geomorphology. The variation in river morphology probably contributed to the assemblage differences between stabilized and reference river bends; stabilized alluvial pools were deeper than reference alluvial pools, but the depths of stabilized and reference bluff pools did not differ. The strengths of the relationships among fish assemblages, bank stabilization, and side channels were spatially scale dependent; optimum spatial scales ranged from less than 200 m to 3,200 m up- and downstream, suggesting that bank stabilization and side channels influenced fish assemblages across multiple spatial scales.

Employing lidar to detail vegetation canopy architecture for prediction of aeolian transport

USGS Publications Warehouse

Sankey, Joel B.; Law, Darin J.; Breshears, David D.; Munson, Seth M.; Webb, Robert H.

2013-01-01

The diverse and fundamental effects that aeolian processes have on the biosphere and geosphere are commonly generated by horizontal sediment transport at the land surface. However, predicting horizontal sediment transport depends on vegetation architecture, which is difficult to quantify in a rapid but accurate manner. We demonstrate an approach to measure vegetation canopy architecture at high resolution using lidar along a gradient of dryland sites ranging from 2% to 73% woody plant canopy cover. Lidar-derived canopy height, distance (gaps) between vegetation elements (e.g., trunks, limbs, leaves), and the distribution of gaps scaled by vegetation height were correlated with canopy cover and highlight potentially improved horizontal dust flux estimation than with cover alone. Employing lidar to estimate detailed vegetation canopy architecture offers promise for improved predictions of horizontal sediment transport across heterogeneous plant assemblages.

Quantitative estimation of climatic parameters from vegetation data in North America by the mutual climatic range technique

USGS Publications Warehouse

Anderson, Katherine H.; Bartlein, Patrick J.; Strickland, Laura E.; Pelltier, Richard T.; Thompson, Robert S.; Shafer, Sarah L.

2012-01-01

The mutual climatic range (MCR) technique is perhaps the most widely used method for estimating past climatic parameters from fossil assemblages, largely because it can be conducted on a simple list of the taxa present in an assemblage. When applied to plant macrofossil data, this unweighted approach (MCRun) will frequently identify a large range for a given climatic parameter where the species in an assemblage can theoretically live together. To narrow this range, we devised a new weighted approach (MCRwt) that employs information from the modern relations between climatic parameters and plant distributions to lessen the influence of the "tails" of the distributions of the climatic data associated with the taxa in an assemblage. To assess the performance of the MCR approaches, we applied them to a set of modern climatic data and plant distributions on a 25-km grid for North America, and compared observed and estimated climatic values for each grid point. In general, MCRwt was superior to MCRun in providing smaller anomalies, less bias, and better correlations between observed and estimated values. However, by the same measures, the results of Modern Analog Technique (MAT) approaches were superior to MCRwt. Although this might be reason to favor MAT approaches, they are based on assumptions that may not be valid for paleoclimatic reconstructions, including that: 1) the absence of a taxon from a fossil sample is meaningful, 2) plant associations were largely unaffected by past changes in either levels of atmospheric carbon dioxide or in the seasonal distributions of solar radiation, and 3) plant associations of the past are adequately represented on the modern landscape. To illustrate the application of these MCR and MAT approaches to paleoclimatic reconstructions, we applied them to a Pleistocene paleobotanical assemblage from the western United States. From our examinations of the estimates of modern and past climates from vegetation assemblages, we conclude that the MCRun technique provides reliable and unbiased estimates of the ranges of possible climatic conditions that can reasonably be associated with these assemblages. The application of MCRwt and MAT approaches can further constrain these estimates and may provide a systematic way to assess uncertainty. The data sets required for MCR analyses in North America are provided in a parallel publication.

A comparative biodiversity study of the associated fauna of perennial fucoids and filamentous algae

NASA Astrophysics Data System (ADS)

Råberg, Sonja; Kautsky, Lena

2007-06-01

Anthropogenic activities worldwide have contributed to vegetation changes in many coastal areas, changes that may in turn affect faunal and algal assemblages in the involved ecosystems. In the northernmost part of the Baltic Sea the salinity is extremely low (3-4) and the only structurally complex alga present is Fucus radicans. Since in this area F. radicans is living at its salinity tolerance limit, it is potentially very sensitive to environmental changes. Any change in salinity could thus alter the overall algal community, changing it to one dominated solely by filamentous algae. To determine the importance of F. radicans to the associated faunal community, we examined differences between the 2 main vegetation types present, i.e., F. radicans and filamentous algae, in the Kronören marine reserve in the northernmost part of the Baltic Sea. A similar study was conducted in the Askö area in the northern Baltic Proper, where the more-investigated Fucus vesiculosus is the only large fucoid present. The biomass of associated fauna was significantly higher in both the F. radicans and F. vesiculosus than in the filamentous algal vegetation at some, but not all, sites. The F. radicans community also displayed a greater diversity of associated fauna in 3 of 5 investigated Kronören sites, whereas no difference in diversity was detected between F. vesiculosus and the filamentous algal vegetations in the Askö sites. Furthermore, the F. radicans community displayed a different faunal community, being the only investigated algal community with a faunal community dominated by K-strategy species, according to abundance-biomass comparison curves. This pattern may be due to the low epiphytic load on these Fucus plants. In contrast, the F. vesiculosus community, as well as the algal communities with no Fucus in both areas, had high biomasses of filamentous algae and an invertebrate fauna dominated by Chironomidae, occurring in great abundance but only with a low biomass. ANOSIM analyses of faunal composition demonstrated a significant difference between the 2 vegetation types in both areas, largely due to greater abundance of Gammarus spp. and Theodoxus fluviatilis in the fucoid vegetation. Differences observed between the F. radicans and filamentous algal vegetation types were generally more pronounced than those between F. vesiculosus and nearby filamentous algal vegetation. These observations may be due to abiotic factors that differ between the 2 investigated areas, factors such as depth distribution, wave action and eutrophication level. This study has demonstrated that the less-investigated F. radicans may be as important as the larger F. vesiculosus for the associated faunal assemblages. At the same time, the limited extent of F. radicans at shallower depths makes F. radicans vegetation potentially more vulnerable to anthropogenic changes, as declines in fucoid vegetation are usually first manifested in populations at their lower depth limits, whereas shallow populations are less affected.

Distribution of phytobenthos in the Yakima River basin, Washington, in relation to geology, land use, and other environmental factors

USGS Publications Warehouse

Leland, Harry V.

1995-01-01

Benthic-algal distributions in the Yakima River, Washington, basin were, examined in relation to geology, land use, water chemistry, and stream habitat using indicator-species classification (TWINSPAN) and canonical correspondence analysis (CCA). Algal assemblages identified byTWINSPAN were each associated with a narrow range of water-quality conditions. In the Cascade geologic province, where timber harvest and grazing are the dominant land uses, differences in community structure (CCA site scores) and concentrations of major ions (Ca and Mg) and nutrients (solute P, SiO2 and inorganic N) varied with dominant rock type of the basin. In agricultural areas of the Columbia Plateau province, differences in phytobenthos structure were based primarily on the degree of enrichment of dissolved solids, inorganic N, and solute P from irrigation-return flows and subsurface drainage. Habitat characteristics strongly correlated with community structure included reach altitude, turbidity, substratum embeddedness (Columbia Plateau), large woody-debris density (Cascade Range), and composition and density of the riparian vegetation. Algal biomass (AFDM) correlated with composition and density of the riparian vegetation but not with measured chemical-constituent concentrations. Nitrogen limitation in streams of the Cascade Range favored nitrogen-fixing blue-green algae and diatoms with endosymbiotic blue-greens, whereas nitrogen heterotrophs were abundant in agricultural areas of the Columbia Plateau.

Distribution of phytobenthos in the Yakima River basin, Washington, in relation to geology, land use and other environmental factors

USGS Publications Warehouse

Leland, Harry V.

1995-01-01

Benthic-algal distributions in the Yakima River, Washington, basin were, examined in relation to geology, land use, water chemistry, and stream habitat using indicator-species classification (TWINSPAN) and canonical correspondence analysis (CCA). Algal assemblages identified byTWINSPAN were each associated with a narrow range of water-quality conditions. In the Cascade geologic province, where timber harvest and grazing are the dominant land uses, differences in community structure (CCA site scores) and concentrations of major ions (Ca and Mg) and nutrients (solute P, SiO2 and inorganic N) varied with dominant rock type of the basin. In agricultural areas of the Columbia Plateau province, differences in phytobenthos structure were based primarily on the degree of enrichment of dissolved solids, inorganic N, and solute P from irrigation-return flows and subsurface drainage. Habitat characteristics strongly correlated with community structure included reach altitude, turbidity, substratum embeddedness (Columbia Plateau), large woody-debris density (Cascade Range), and composition and density of the riparian vegetation. Algal biomass (AFDM) correlated with composition and density of the riparian vegetation but not with measured chemical-constituent concentrations. Nitrogen limitation in streams of the Cascade Range favored nitrogen-fixing blue-green algae and diatoms with endosymbiotic blue-greens, whereas nitrogen heterotrophs were abundant in agricultural areas of the Columbia Plateau.

Determinants of fish assemblage structure in Northwestern Great Plains streams

USGS Publications Warehouse

Mullen, J.A.; Bramblett, R.G.; Guy, C.S.; Zale, A.V.; Roberts, D.W.

2011-01-01

Prairie streams are known for their harsh and stochastic physical conditions, and the fish assemblages therein have been shown to be temporally variable. We assessed the spatial and temporal variation in fish assemblage structure in five intermittent, adventitious northwestern Great Plains streams representing a gradient of watershed areas. Fish assemblages and abiotic conditions varied more spatially than temporally. The most important variables explaining fish assemblage structure were longitudinal position and the proportion of fine substrates. The proportion of fine substrates increased proceeding upstream, approaching 100% in all five streams, and species richness declined upstream with increasing fine substrates. High levels of fine substrate in the upper reaches appeared to limit the distribution of obligate lithophilic fish species to reaches further downstream. Species richness and substrates were similar among all five streams at the lowermost and uppermost sites. However, in the middle reaches, species richness increased, the amount of fine substrate decreased, and connectivity increased as watershed area increased. Season and some dimensions of habitat (including thalweg depth, absolute distance to the main-stem river, and watershed size) were not essential in explaining the variation in fish assemblages. Fish species richness varied more temporally than overall fish assemblage structure did because common species were consistently abundant across seasons, whereas rare species were sometimes absent or perhaps not detected by sampling. The similarity in our results among five streams varying in watershed size and those from other studies supports the generalization that spatial variation exceeds temporal variation in the fish assemblages of prairie and warmwater streams. Furthermore, given longitudinal position, substrate, and stream size, general predictions regarding fish assemblage structure and function in prairie streams are possible. ?? American Fisheries Society 2011.

Inundation, vegetation, and sediment effects on litter decomposition in Pacific Coast tidal marshes

USGS Publications Warehouse

Janousek, Christopher; Buffington, Kevin J.; Guntenspergen, Glenn R.; Thorne, Karen M.; Dugger, Bruce D.; Takekawa, John Y.

2017-01-01

The cycling and sequestration of carbon are important ecosystem functions of estuarine wetlands that may be affected by climate change. We conducted experiments across a latitudinal and climate gradient of tidal marshes in the northeast Pacific to evaluate the effects of climate- and vegetation-related factors on litter decomposition. We manipulated tidal exposure and litter type in experimental mesocosms at two sites and used variation across marsh landscapes at seven sites to test for relationships between decomposition and marsh elevation, soil temperature, vegetation composition, litter quality, and sediment organic content. A greater than tenfold increase in manipulated tidal inundation resulted in small increases in decomposition of roots and rhizomes of two species, but no significant change in decay rates of shoots of three other species. In contrast, across the latitudinal gradient, decomposition rates of Salicornia pacifica litter were greater in high marsh than in low marsh. Rates were not correlated with sediment temperature or organic content, but were associated with plant assemblage structure including above-ground cover, species composition, and species richness. Decomposition rates also varied by litter type; at two sites in the Pacific Northwest, the grasses Deschampsia cespitosa and Distichlis spicata decomposed more slowly than the forb S. pacifica. Our data suggest that elevation gradients and vegetation structure in tidal marshes both affect rates of litter decay, potentially leading to complex spatial patterns in sediment carbon dynamics. Climate change may thus have direct effects on rates of decomposition through increased inundation from sea-level rise and indirect effects through changing plant community composition.

Are vegetated areas of mangroves attractive to juvenile and small fish? The case of Dongzhaigang Bay, Hainan Island, China

NASA Astrophysics Data System (ADS)

Wang, Mao; Huang, Zhenyuan; Shi, Fushan; Wang, Wenqing

2009-11-01

Well-developed aerial roots of mangroves make it difficult to study how fish utilize the mangrove forest as a habitat. In the present study, we compared the differences in fish assemblages in three major types of habitats of mangrove estuary (vegetated area, treeless mudflat, and creek) of a mangrove bay in Hainan Island, China, at different seasons during two consecutive years. Three types of gears, centipede net, gill net and cast net, were used in the different habitats of mangrove estuary and sampling efficiencies among gears were evaluated. Centipede nets were used in all the three types of habitats and cast nets and gill nets in treeless mudflats and creeks. Fish assemblages were dependent on gears used. Centipede net could efficiently catch fish occurring both inside and outside of vegetated areas efficiently. A total of 115 fish species in 51 families were collected. In terms of numbers of species per family, Gobiidae was the most diverse (17 species), followed by Mugilidae (5 species). Almost all of the fish were juvenile or small fish and few predators were recorded, implying low predation pressure in the bay. ANOVA analysis showed that significant seasonal and spatial variation existed in species richness, abundance, and biomass, which were less in the vegetated areas than those of treeless mudflats and creeks. The attraction of vegetated areas to fish was less than that of creeks and mudflats. Many species were specific to a particular habitat type, 4 species occurring exclusively in the creeks, 45 species occurring exclusively in the treeless mudflats, and 5 species occurring exclusively in the vegetated areas. The results indicated that mangrove estuaries were potentially attractive habitats for juvenile and small fish, but this attraction was accomplished by a connection of vegetated areas, treeless mudflats and creeks, not only by vegetated areas.

Relationships between structural complexity, coral traits, and reef fish assemblages

NASA Astrophysics Data System (ADS)

Darling, Emily S.; Graham, Nicholas A. J.; Januchowski-Hartley, Fraser A.; Nash, Kirsty L.; Pratchett, Morgan S.; Wilson, Shaun K.

2017-06-01

With the ongoing loss of coral cover and the associated flattening of reef architecture, understanding the links between coral habitat and reef fishes is of critical importance. Here, we investigate whether considering coral traits and functional diversity provides new insights into the relationship between structural complexity and reef fish communities, and whether coral traits and community composition can predict structural complexity. Across 157 sites in Seychelles, Maldives, the Chagos Archipelago, and Australia's Great Barrier Reef, we find that structural complexity and reef zone are the strongest and most consistent predictors of reef fish abundance, biomass, species richness, and trophic structure. However, coral traits, diversity, and life histories provided additional predictive power for models of reef fish assemblages, and were key drivers of structural complexity. Our findings highlight that reef complexity relies on living corals—with different traits and life histories—continuing to build carbonate skeletons, and that these nuanced relationships between coral assemblages and habitat complexity can affect the structure of reef fish assemblages. Seascape-level estimates of structural complexity are rapid and cost effective with important implications for the structure and function of fish assemblages, and should be incorporated into monitoring programs.

Palaeoecological construction from the Oligo-Miocene coal deposits of Gelibolu Peninsula, NW Turkey.

NASA Astrophysics Data System (ADS)

Demirtaş, Ferdi; Koşun, Erdal; Serkan Akkiraz, Mehmet; Bozcu, Mustafa; Koç, Koray

2015-04-01

The palynomorph composition of the Upper Oligocene and Miocene coal deposits from Gelibolu peninsula, NW Turkey, was analyzed to determine the palaeoclimate conditions. The samples were collected from two different abandoned coal mines. Also two different palynological assemblages were reported. The first one belongs to the Late Oligocene (Osmancik Formation). The other one is the Miocene (Gazhanedere Formation). The Late Oligocene palynological assemblage consist mainly of Alnus, Myricaceae, Cyrillaceae-Clethraceae, Calamus and Castanea. Riparian vegetation or wetland forest community incorporate high amounts of Alnus, and low percentages of deciduous Salix, Pterocarya and Carya. Calamus, which is a stratigraphical marker for the Late Oligocene of the Thrace Basin, was also recorded in high quantities. The content of the Miocene palynological assemblage is different from the Late Oligocene assemblage, and is mainly made up of Polypodiaceae, Poaceae, Chenopodiaceae, Myricaceae, Oleaceae, Cyrillaceae-Clethraceae and Sapotaceae. Calamus and Alnus totally disappear here. In contrast, open vegetation elements such Poaceae and Chenopodiaceae occur frequently. The palaeoclimate calculations were made by the help of coexistence approach method. The late Oligocene association contains a total of 18 taxa, 11 of which were used for calculating the coexistence intervals. The values obtained 15.6 to 21.1 ° C for annual temperature, 5.0 to 13.3 ° C for winter temperature, 24.7 to 28.1 ° C for summer temperature and, 1096 to 1355 mm annual rainfall. In the Miocene palynological assemblage 23 taxa were identified. The palaeoclimate calculation is based on the 21 taxa. Quantitative data indicate the values for the mean annual temperature 15.6-21.3 ° C, for the winter temperature 5.0 to 13.3 ° C, 24.7- 27.9 ° C for summer temperature and 823-1520 mm for the annual rainfall. The palaeoclimate was warm and contained dry seasons due to lower boundary of annual precipitation lying at 823 mm during the Miocene. This may be linked ecological dominance of open-habitat grasses such as Poaceae and Chenopodiaceae.

Front Range Infrastructure Resources Project--Biological Resources

USGS Publications Warehouse

,

1998-01-01

Riparian (streamside) vegetation communities are of interest in the context of the Front Range Infrastructure Resources Project (FRIRP) because they are often a focal point for conflicting societal demands. The cottonwoods and willows comprising these communities are structurally complex compared to the surrounding landscape and support diverse assemblages of mammals, birds, reptiles, and amphibians. However, riparian areas are also primary sites for water development, agriculture, grazing, sand and gravel mining, and recreation, each of which may limit other uses. Direct and indirect impacts of these activities have led to exploration of new opportunities and techniques for restoring disturbed riparian habitats and to greater concern for some of the scarce species that inhabit them.

Temporal turnover and the maintenance of diversity in ecological assemblages

PubMed Central

Magurran, Anne E.; Henderson, Peter A.

2010-01-01

Temporal variation in species abundances occurs in all ecological communities. Here, we explore the role that this temporal turnover plays in maintaining assemblage diversity. We investigate a three-decade time series of estuarine fishes and show that the abundances of the individual species fluctuate asynchronously around their mean levels. We then use a time-series modelling approach to examine the consequences of different patterns of turnover, by asking how the correlation between the abundance of a species in a given year and its abundance in the previous year influences the structure of the overall assemblage. Classical diversity measures that ignore species identities reveal that the observed assemblage structure will persist under all but the most extreme conditions. However, metrics that track species identities indicate a narrower set of turnover scenarios under which the predicted assemblage resembles the natural one. Our study suggests that species diversity metrics are insensitive to change and that measures that track species ranks may provide better early warning that an assemblage is being perturbed. It also highlights the need to incorporate temporal turnover in investigations of assemblage structure and function. PMID:20980310

Broad-Scale Patterns of Late Jurassic Dinosaur Paleoecology

PubMed Central

Noto, Christopher R.; Grossman, Ari

2010-01-01

Background There have been numerous studies on dinosaur biogeographic distribution patterns. However, these distribution data have not yet been applied to ecological questions. Ecological studies of dinosaurs have tended to focus on reconstructing individual taxa, usually through comparisons to modern analogs. Fewer studies have sought to determine if the ecological structure of fossil assemblages is preserved and, if so, how dinosaur communities varied. Climate is a major component driving differences between communities. If the ecological structure of a fossil locality is preserved, we expect that dinosaur assemblages from similar environments will share a similar ecological structure. Methodology/Principal Findings This study applies Ecological Structure Analysis (ESA) to a dataset of 100+ dinosaur taxa arranged into twelve composite fossil assemblages from around the world. Each assemblage was assigned a climate zone (biome) based on its location. Dinosaur taxa were placed into ecomorphological categories. The proportion of each category creates an ecological profile for the assemblage, which were compared using cluster and principal components analyses. Assemblages grouped according to biome, with most coming from arid or semi-arid/seasonal climates. Differences between assemblages are tied to the proportion of large high-browsing vs. small ground-foraging herbivores, which separates arid from semi-arid and moister environments, respectively. However, the effects of historical, taphonomic, and other environmental factors are still evident. Conclusions/Significance This study is the first to show that the general ecological structure of Late Jurassic dinosaur assemblages is preserved at large scales and can be assessed quantitatively. Despite a broad similarity of climatic conditions, a degree of ecological variation is observed between assemblages, from arid to moist. Taxonomic differences between Asia and the other regions demonstrate at least one case of ecosystem convergence. The proportion of different ecomorphs, which reflects the prevailing climatic and environmental conditions present during fossil deposition, may therefore be used to differentiate Late Jurassic dinosaur fossil assemblages. This method is broadly applicable to different taxa and times, allowing one to address questions of evolutionary, biogeographic, and climatic importance. PMID:20838442

Broad-scale patterns of late jurassic dinosaur paleoecology.

PubMed

Noto, Christopher R; Grossman, Ari

2010-09-03

There have been numerous studies on dinosaur biogeographic distribution patterns. However, these distribution data have not yet been applied to ecological questions. Ecological studies of dinosaurs have tended to focus on reconstructing individual taxa, usually through comparisons to modern analogs. Fewer studies have sought to determine if the ecological structure of fossil assemblages is preserved and, if so, how dinosaur communities varied. Climate is a major component driving differences between communities. If the ecological structure of a fossil locality is preserved, we expect that dinosaur assemblages from similar environments will share a similar ecological structure. This study applies Ecological Structure Analysis (ESA) to a dataset of 100+ dinosaur taxa arranged into twelve composite fossil assemblages from around the world. Each assemblage was assigned a climate zone (biome) based on its location. Dinosaur taxa were placed into ecomorphological categories. The proportion of each category creates an ecological profile for the assemblage, which were compared using cluster and principal components analyses. Assemblages grouped according to biome, with most coming from arid or semi-arid/seasonal climates. Differences between assemblages are tied to the proportion of large high-browsing vs. small ground-foraging herbivores, which separates arid from semi-arid and moister environments, respectively. However, the effects of historical, taphonomic, and other environmental factors are still evident. This study is the first to show that the general ecological structure of Late Jurassic dinosaur assemblages is preserved at large scales and can be assessed quantitatively. Despite a broad similarity of climatic conditions, a degree of ecological variation is observed between assemblages, from arid to moist. Taxonomic differences between Asia and the other regions demonstrate at least one case of ecosystem convergence. The proportion of different ecomorphs, which reflects the prevailing climatic and environmental conditions present during fossil deposition, may therefore be used to differentiate Late Jurassic dinosaur fossil assemblages. This method is broadly applicable to different taxa and times, allowing one to address questions of evolutionary, biogeographic, and climatic importance.

Arthropod assemblages on native and nonnative plant species of a coastal reserve in California.

PubMed

Fork, Susanne K

2010-06-01

Biological invasions by nonnative plant species are a widespread phenomenon. Many studies have shown strong ecological impacts of plant invasions on native plant communities and ecosystem processes. Far fewer studies have examined effects on associated animal communities. From the perspective of a reserve's land management, I addressed the question of whether arthropod assemblages on two nonnative plant species of concern were impoverished compared with those assemblages associated with two predominant native plant species of that reserve. If the nonnative plant species, Conium maculatum L., and Phalaris aquatica L., supported highly depauperate arthropod assemblages compared with the native plant species, Baccharis pilularis De Candolle and Leymus triticoides (Buckley) Pilger, this finding would provide additional support for prioritizing removal of nonnatives and restoration of natives. I assessed invertebrate assemblages at the taxonomic levels of arthropod orders, Coleoptera families, and Formicidae species, using univariate analyses to examine community attributes (richness and abundance) and multivariate techniques to assess arthropod assemblage community composition differences among plant species. Arthropod richness estimates by taxonomic level between native and nonnative vegetation showed varying results. Overall, arthropod richness of the selected nonnative plants, examined at higher taxonomic resolution, was not necessarily less diverse than two of common native plants found on the reserve, although differences were found among plant species. Impacts of certain nonnative plant species on arthropod assemblages may be more difficult to elucidate than those impacts shown on native plants and ecosystem processes.

The impact of logging roads on dung beetle assemblages in a tropical rainforest reserve.

PubMed

Edwards, Felicity A; Finan, Jessica; Graham, Lucy K; Larsen, Trond H; Wilcove, David S; Hsu, Wayne W; Chey, V K; Hamer, Keith C

2017-01-01

The demand for timber products is facilitating the degradation and opening up of large areas of intact habitats rich in biodiversity. Logging creates an extensive network of access roads within the forest, yet these are commonly ignored or excluded when assessing impacts of logging on forest biodiversity. Here we determine the impact of these roads on the overall condition of selectively logged forests in Borneo, Southeast Asia. Focusing on dung beetles along > 40 km logging roads we determine: (i) the magnitude and extent of edge effects alongside logging roads; (ii) whether vegetation characteristics can explain patterns in dung beetle communities, and; (iii) how the inclusion of road edge forest impacts dung beetle assemblages within the overall logged landscape. We found that while vegetation structure was significantly affected up to 34 m from the road edge, impacts on dung beetle communities penetrated much further and were discernible up to 170 m into the forest interior. We found larger species and particularly tunnelling species responded more than other functional groups which were also influenced by micro-habitat variation. We provide important new insights into the long-term ecological impacts of tropical logging. We also support calls for improved logging road design both during and after timber extraction to conserve more effectively biodiversity in production forests, for instance, by considering the minimum volume of timber, per unit length of logging road needed to justify road construction. In particular, we suggest that governments and certification bodies need to highlight more clearly the biodiversity and environmental impacts of logging roads.

Holocene Climate, Fire and Vegetation Change Inferred from Lacustrine Proxies in the Tropical Andes, Laguna Yanacocha, SE Peru

NASA Astrophysics Data System (ADS)

Axford, Y.; Isaacson, M.; Matthews-Bird, F.; Schellinger, G. C.; Carrio, C. L.; Kelly, M. A.; Lowell, T. V.; Beal, S. A., Jr.; Stroup, J. S.; Tapia, P. M.

2016-12-01

We present a 12,000-year long paleoenvironmental reconstruction from a small high-elevation lake in southeastern Peru. Climate and environmental change are inferred from chironomid species assemblages, charcoal abundance, size and morphology, and the abundance of some important pollen and spore types (Poaceae, Asteraceae, Isoetes). We employ a new chironomid training set developed for tropical South America (Matthews-Bird et al. 2016) to interpret shifts in chironomid assemblages. The sedimentary record from Yanacocha was first discussed by Beal et al. (2014), who reconstructed Hg deposition and measured metals, biogenic silica and loss-on-ignition through the Holocene. Additional downcore proxies are presented by Stroup et al. (this meeting). Yanacocha sits at 4910 m asl and less than 2 km from Quelccaya Ice Cap (QIC), but the lake's watershed has been topographically isolated from glacier meltwater since 12.3 ka. We compare our inferences from biological proxies with independent constraints on paleoclimate derived from published reconstructions of QIC fluctuations. Previous studies found that temperature was the primary driver of late Holocene fluctuations of QIC (e.g., Stroup et al. 2014), but records from the broader region indicate the Holocene also saw major changes in hydroclimate. Most modern precipitation at Yanacocha derives from the Amazon Basin to the east, and El Niño years are associated with drier conditions. Holocene sediments at Yanacocha likely thus record both changes in temperature and hydroclimate. Vegetation was sparse and no charcoal was preserved prior to 11.7 ka, whereas the early Holocene saw the highest overall pollen concentrations of the entire record and the onset of charcoal preservation. An increase in charcoal abundance, decrease in pollen concentrations, and shifts in vegetation and chironomid assemblages at Yanacocha suggest drier conditions from 9 to 3.5 ka, consistent with widespread regional evidence for early to middle Holocene aridity. One sample at 8.4 ka contains uniquely abundant charcoal, Poaceae and Asteraceae, possibly recording a brief (<500 yr) and uniquely dramatic dry event at that time. Shifts in chironomid assemblages, including a major shift centered on 1000 AD, indicate a variable climate through the late Holocene.

Terroir is a key driver of seed-associated microbial assemblages.

PubMed

Klaedtke, Stephanie; Jacques, Marie-Agnès; Raggi, Lorenzo; Préveaux, Anne; Bonneau, Sophie; Negri, Valeria; Chable, Véronique; Barret, Matthieu

2016-06-01

Seeds have evolved in association with diverse microbial assemblages that may influence plant growth and health. However, little is known about the composition of seed-associated microbial assemblages and the ecological processes shaping their structures. In this work, we monitored the relative influence of the host genotypes and terroir on the structure of the seed microbiota through metabarcoding analysis of different microbial assemblages associated to five different bean cultivars harvested in two distinct farms. Overall, few bacterial and fungal operational taxonomic units (OTUs) were conserved across all seed samples. The lack of shared OTUs between samples is explained by a significant effect of the farm site on the structure of microbial assemblage, which explained 12.2% and 39.7% of variance in bacterial and fungal diversity across samples. This site-specific effect is reflected by the significant enrichment of 70 OTUs in Brittany and 88 OTUs in Luxembourg that lead to differences in co-occurrence patterns. In contrast, variance in microbial assemblage structure was not explained by host genotype. Altogether, these results suggest that seed-associated microbial assemblage is determined by niche-based processes and that the terroir is a key driver of these selective forces. © 2015 Society for Applied Microbiology and John Wiley & Sons Ltd.

Paleobotany and palynology of the Bristol Hill Coal Member (Bond Formation) and Friendsville Coal Member (Mattoon Formation) of the Illinois Basin (Upper Pennsylvanian)

USGS Publications Warehouse

Willard, D.A.; Phillips, T.L.

1993-01-01

Late Pennsylvanian coal swamps of the Illinois Basin were dominated by Psarnius tree ferns with a spatially heterogeneous distribution of medullosan pteridosperms (subdominant), calamites, sigillarian lycopsids, and cordaites. Miospore and coal-ball plant assemblages from the Missourian-age Bristol Hill Coal Member (Mattoon Formation) of southeastern Illinois were quantified to analyze vegetational patterns in Late Pennsylvanian peat swamps and to compare vegetational composition of the coals. -from Authors

ANT COMMUNITIES AND LIVESTOCK GRAZING IN THE GREAT BASIN, USA

EPA Science Inventory

The objectives of this study were to determine if metrics for ant species assemblages can be used as indicators of rangeland condition, and to determine the influence of vegetation and ground cover variables, factors often influenced by livestock grazing, on ant communities. The ...

Explaining variations in the diversity of parasitoid assemblages in a biosphere reserve of Mexico: evidence from vegetation, land management and seasonality.

PubMed

González-Moreno, A; Bordera, S; Leirana-Alcocer, J; Delfín-González, H; Ballina-Gómez, H S

2017-11-23

Insect fauna biodiversity in natural protected areas has not been thoroughly studied. Therefore, the aim of this work was to assess whether and how vegetation types, land management and seasonality influence the diversity of Ichneumonidae (Hymenoptera) in the Ría Lagartos Biosphere Reserve (Mexico). A sampling programme was conducted using Malaise traps from 2008 to 2009 in three vegetation types, each with two conservation zones (core and buffer zones). Three seasons were considered: rainy, dry and north-winds (isolated storms from November to February). A total of 336 species were identified. Rarefaction and Generalized Linear Model indicated higher species richness and abundance, respectively, in the buffer zone of the dry forest; possible explanations for this finding include the intermediate disturbance hypothesis, wherein diversity can be higher in sites where disturbance is not very frequent or very intense, and the 'enemies hypothesis', wherein structural complexity and high plant diversity favour increased predators or, in this case, parasitoids. Diversity was higher during the rainy season, which may have been due to the higher availability of resources. Vegetation and management had a positive impact on the Coc (attack cocoons and pupae) and Myc (attack concealed larvae living in the fruiting bodies of mushrooms) parasitoid guilds. Members of the Coc guild are generalist parasitoids, which may be favoured in complex vegetation with a high richness of potential hosts and non-hosts. The Myc guild requires certain environmental conditions that promote fungal growth, such as humidity, that is absent in the other vegetation types of savannah and coastal dune scrubland.

Aquatic insect assemblages of man-made permanent ponds, Buenos Aires city, Argentina.

PubMed

Fontanarrosa, M S; Collantes, M B; Bachmann, A O

2013-02-01

Freshwater habitats are important elements within urban green space and they are endangered by various types of human activity. With the aim to increase the knowledge about species biodiversity in urban ecosystems, we characterised the assemblages of aquatic insects in four permanent man-made ponds in Buenos Aires city (Argentina) during a 1-year period. We recorded 32 species with Sigara spp. (Hemiptera) as the most abundant. The removal of aquatic vegetation from the studied ponds may have affected both the establishment and permanence of the insect community. Swimmers were the dominant group in the studied sites, followed by burrowers and sprawlers, and only a few strictly climbers were collected. Therefore, all sampled ponds were dominated by collectors (principally gatherers), secondarily by predators and only few shredders were detected, which was much affected by the removal of macrophytes. Non-parametric abundance indexes estimated a number of species very close to the observed number in each site. Conversely, the incidence indexes estimated more species because there were many more taxa present only in one sample than those represented by few individual in a sample. Our data provides some insights on the community of man-made ponds that can improve the management of these aquatic urban habitats. Considering that macrophytes affect animal assemblages due to their role as physical structures that increase the complexity or heterogeneity of habitats, they should not be removed by authorities in order to promote biodiversity.

Differences in stability of seed-associated microbial assemblages in response to invasion by phytopathogenic microorganisms.

PubMed

Rezki, Samir; Campion, Claire; Iacomi-Vasilescu, Beatrice; Preveaux, Anne; Toualbia, Youness; Bonneau, Sophie; Briand, Martial; Laurent, Emmanuelle; Hunault, Gilles; Simoneau, Philippe; Jacques, Marie-Agnès; Barret, Matthieu

2016-01-01

Seeds are involved in the vertical transmission of microorganisms from one plant generation to another and consequently act as reservoirs for the plant microbiota. However, little is known about the structure of seed-associated microbial assemblages and the regulators of assemblage structure. In this work, we have assessed the response of seed-associated microbial assemblages of Raphanus sativus to invading phytopathogenic agents, the bacterial strain Xanthomonas campestris pv. campestris (Xcc) 8004 and the fungal strain Alternaria brassicicola Abra43. According to the indicators of bacterial (16S rRNA gene and gyrB sequences) and fungal (ITS1) diversity employed in this study, seed transmission of the bacterial strain Xcc 8004 did not change the overall composition of resident microbial assemblages. In contrast seed transmission of Abra43 strongly modified the richness and structure of fungal assemblages without affecting bacterial assemblages. The sensitivity of seed-associated fungal assemblage to Abra43 is mostly related to changes in relative abundance of closely related fungal species that belong to the Alternaria genus. Variation in stability of the seed microbiota in response to Xcc and Abra43 invasions could be explained by differences in seed transmission pathways employed by these micro-organisms, which ultimately results in divergence in spatio-temporal colonization of the seed habitat.

Differences in stability of seed-associated microbial assemblages in response to invasion by phytopathogenic microorganisms

PubMed Central

Rezki, Samir; Campion, Claire; Iacomi-Vasilescu, Beatrice; Preveaux, Anne; Toualbia, Youness; Bonneau, Sophie; Briand, Martial; Laurent, Emmanuelle; Hunault, Gilles; Simoneau, Philippe; Jacques, Marie-Agnès

2016-01-01

Seeds are involved in the vertical transmission of microorganisms from one plant generation to another and consequently act as reservoirs for the plant microbiota. However, little is known about the structure of seed-associated microbial assemblages and the regulators of assemblage structure. In this work, we have assessed the response of seed-associated microbial assemblages of Raphanus sativus to invading phytopathogenic agents, the bacterial strain Xanthomonas campestris pv. campestris (Xcc) 8004 and the fungal strain Alternaria brassicicola Abra43. According to the indicators of bacterial (16S rRNA gene and gyrB sequences) and fungal (ITS1) diversity employed in this study, seed transmission of the bacterial strain Xcc 8004 did not change the overall composition of resident microbial assemblages. In contrast seed transmission of Abra43 strongly modified the richness and structure of fungal assemblages without affecting bacterial assemblages. The sensitivity of seed-associated fungal assemblage to Abra43 is mostly related to changes in relative abundance of closely related fungal species that belong to the Alternaria genus. Variation in stability of the seed microbiota in response to Xcc and Abra43 invasions could be explained by differences in seed transmission pathways employed by these micro-organisms, which ultimately results in divergence in spatio-temporal colonization of the seed habitat. PMID:27077013

Change in Mesoherbivore Browsing Is Mediated by Elephant and Hillslope Position.

PubMed

Lagendijk, D D Georgette; Thaker, Maria; de Boer, Willem F; Page, Bruce R; Prins, Herbert H T; Slotow, Rob

2015-01-01

Elephant are considered major drivers of ecosystems, but their effects within small-scale landscape features and on other herbivores still remain unclear. Elephant impact on vegetation has been widely studied in areas where elephant have been present for many years. We therefore examined the combined effect of short-term elephant presence (< 4 years) and hillslope position on tree species assemblages, resource availability, browsing intensity and soil properties. Short-term elephant presence did not affect woody species assemblages, but did affect height distribution, with greater sapling densities in elephant access areas. Overall tree and stem densities were also not affected by elephant. By contrast, slope position affected woody species assemblages, but not height distributions and densities. Variation in species assemblages was statistically best explained by levels of total cations, Zinc, sand and clay. Although elephant and mesoherbivore browsing intensities were unaffected by slope position, we found lower mesoherbivore browsing intensity on crests with high elephant browsing intensity. Thus, elephant appear to indirectly facilitate the survival of saplings, via the displacement of mesoherbivores, providing a window of opportunity for saplings to grow into taller trees. In the short-term, effects of elephant can be minor and in the opposite direction of expectation. In addition, such behavioural displacement promotes recruitment of saplings into larger height classes. The interaction between slope position and elephant effect found here is in contrast with other studies, and illustrates the importance of examining ecosystem complexity as a function of variation in species presence and topography. The absence of a direct effect of elephant on vegetation, but the presence of an effect on mesoherbivore browsing, is relevant for conservation areas especially where both herbivore groups are actively managed.

Change in Mesoherbivore Browsing Is Mediated by Elephant and Hillslope Position

PubMed Central

Lagendijk, D. D. Georgette; Thaker, Maria; de Boer, Willem F.; Page, Bruce R.; Prins, Herbert H. T.; Slotow, Rob

2015-01-01

Elephant are considered major drivers of ecosystems, but their effects within small-scale landscape features and on other herbivores still remain unclear. Elephant impact on vegetation has been widely studied in areas where elephant have been present for many years. We therefore examined the combined effect of short-term elephant presence (< 4 years) and hillslope position on tree species assemblages, resource availability, browsing intensity and soil properties. Short-term elephant presence did not affect woody species assemblages, but did affect height distribution, with greater sapling densities in elephant access areas. Overall tree and stem densities were also not affected by elephant. By contrast, slope position affected woody species assemblages, but not height distributions and densities. Variation in species assemblages was statistically best explained by levels of total cations, Zinc, sand and clay. Although elephant and mesoherbivore browsing intensities were unaffected by slope position, we found lower mesoherbivore browsing intensity on crests with high elephant browsing intensity. Thus, elephant appear to indirectly facilitate the survival of saplings, via the displacement of mesoherbivores, providing a window of opportunity for saplings to grow into taller trees. In the short-term, effects of elephant can be minor and in the opposite direction of expectation. In addition, such behavioural displacement promotes recruitment of saplings into larger height classes. The interaction between slope position and elephant effect found here is in contrast with other studies, and illustrates the importance of examining ecosystem complexity as a function of variation in species presence and topography. The absence of a direct effect of elephant on vegetation, but the presence of an effect on mesoherbivore browsing, is relevant for conservation areas especially where both herbivore groups are actively managed. PMID:26083248

Potential population and assemblage influences of non-native trout on native nongame fish in Nebraska headwater streams

USGS Publications Warehouse

Turek, Kelly C.; Pegg, Mark A.; Pope, Kevin L.; Schainost, Steve

2014-01-01

Non-native trout are currently stocked to support recreational fisheries in headwater streams throughout Nebraska. The influence of non-native trout introductions on native fish populations and their role in structuring fish assemblages in these systems is unknown. The objectives of this study were to determine (i) if the size structure or relative abundance of native fish differs in the presence and absence of non-native trout, (ii) if native fish-assemblage structure differs in the presence and absence of non-native trout and (iii) if native fish-assemblage structure differs across a gradient in abundances of non-native trout. Longnose dace Rhinichthys cataractae were larger in the presence of brown trout Salmo trutta and smaller in the presence of rainbow trout Oncorhynchus mykiss compared to sites without trout. There was also a greater proportion of larger white suckers Catostomus commersonii in the presence of brown trout. Creek chub Semotilus atromaculatus and fathead minnow Pimephales promelas size structures were similar in the presence and absence of trout. Relative abundances of longnose dace, white sucker, creek chub and fathead minnow were similar in the presence and absence of trout, but there was greater distinction in native fish-assemblage structure between sites with trout compared to sites without trout as trout abundances increased. These results suggest increased risk to native fish assemblages in sites with high abundances of trout. However, more research is needed to determine the role of non-native trout in structuring native fish assemblages in streams, and the mechanisms through which introduced trout may influence native fish populations.

A Novel Method to Analyze Social Transmission in Chronologically Sequenced Assemblages, Implemented on Cultural Inheritance of the Art of Cooking

PubMed Central

Isaksson, Sven; Funcke, Alexander; Envall, Ida; Enquist, Magnus; Lindenfors, Patrik

2015-01-01

Here we present an analytical technique for the measurement and evaluation of changes in chronologically sequenced assemblages. To illustrate the method, we studied the cultural evolution of European cooking as revealed in seven cook books dispersed over the past 800 years. We investigated if changes in the set of commonly used ingredients were mainly gradual or subject to fashion fluctuations. Applying our method to the data from the cook books revealed that overall, there is a clear continuity in cooking over the ages – cooking is knowledge that is passed down through generations, not something (re-)invented by each generation on its own. Looking at three main categories of ingredients separately (spices, animal products and vegetables), however, disclosed that all ingredients do not change according to the same pattern. While choice of animal products was very conservative, changing completely sequentially, changes in the choices of spices, but also of vegetables, were more unbounded. We hypothesize that this may be due a combination of fashion fluctuations and changes in availability due to contact with the Americas during our study time period. The presented method is also usable on other assemblage type data, and can thus be of utility for analyzing sequential archaeological data from the same area or other similarly organized material. PMID:25970578

Middle Eocene seagrass facies from Apennine carbonate platforms (Italy)

NASA Astrophysics Data System (ADS)

Tomassetti, Laura; Benedetti, Andrea; Brandano, Marco

2016-04-01

Two stratigraphic sections located in the Latium-Abruzzi (Monte Porchio, Central Apennines, Central Italy) and in the Apulian carbonate platform (S. Cesarea-Torre Tiggiano, Salento, Southern Italy) were measured and sampled to document the sedimentological characteristic and the faunistic assemblages of Middle Eocene seagrass deposits. The faunistic assemblages are dominated by porcellaneous foraminifera Orbitolites, Alveolina, Idalina, Spiroloculina, Quinqueloculina, Triloculina and abundant hooked-shaped gypsinids, associated with hooked red algae and green algae Halimeda. Fabiania, rotaliids and textulariids as well as nummulitids are subordinated. The samples were assigned to Lutetian (SBZ13-16) according to the occurrence of Nummulites cf. lehneri, Alveolina ex. gr. elliptica, Idalina berthelini, Orbitolites complanatus, Slovenites decastroi and Medocia blayensis. At Santa Cesarea reticulate nummulites occur in association with Alveolina spp. and Halkyardia minima marking the lower Bartonian (SBZ17). Three main facies associations have been recognised: I) larger porcellaneous foraminiferal grainstones with orbitolitids and alveolinids deposited into high-energy shallow-water settings influenced by wave processes that reworked the sediments associated with a seagrass; II) grainstone to packstone with small porcellaneous foraminifera and abundant permanently-attached gypsinids deposited in a more protected (e.g., small embayment) in situ vegetated environment; III) bioclastic packstone with parautochthonous material reworked from the seagrass by rip currents and accumulated into rip channels in a slightly deeper environment. The biotic assemblages suggest that the depositional environment is consistent with tropical to subtropical vegetated environments within oligotrophic conditions.

Vegetation stability in the Southeastern Brazilian coastal area from 5500 to 1400 14C yr BP deduced from charcoal analysis.

PubMed

Scheel-Ybert

2000-06-01

Charcoal analysis of six shell mounds showed that no major changes of the mainland vegetation ecosystem have taken place along the southeastern Brazilian coast (22 degrees 53'-22 degrees 57'S, 42 degrees 03'-42 degrees 33'W) from 5500 to 1400 14C yr BP. These shell mounds have been occupied by sedentary fisher-gatherer-hunters. Charcoal fragments retrieved from vertical profiles in the archaeological sites were examined; taxonomic determinations were based on a reference collection of charred woods and a program for computer-aided identification. Charcoal assemblages of all the studied sites present taxa from various restinga vegetation types, mangroves, xeromorphic coastal forest, and inland Atlantic Forest. The restinga ecosystem, characteristic of the Brazilian coast, is associated with sandy beach ridges; the restinga forest was much more abundant during the studied period than nowadays. The charcoal assemblages represent mainly the local vegetation; a regional reconstruction depends on the study of numerous sites. In the Cabo Frio region, open restinga taxa are more abundant in the Sambaqui do Forte, while forest elements are more important in the Sambaquis Salinas Peroano and Boca da Barra. The sites studied in the Arraial do Cabo (Sambaqui da Ponta da Cabeça) and in the Saquarema regions (Sambaquis da Pontinha and da Beirada) show that open restinga formations were locally predominant. A comparison of multivariate analysis applied to both charcoal assemblages and to phytosociological data of the extant vegetation showed a good correspondence between the charcoal spectra and the present vegetation. The high taxonomic diversity of archaeological charcoal samples and numerous fragments showing traces of decay before charring suggests that aleatory gathering of dead wood constituted the main source of firewood for fisher-gatherer-hunters populations. Condalia sp. was probably selected for cultural reasons.The only significant fluctuations on the charcoal spectra relate to the mangrove vegetation. Two relatively humid episodes (recorded from ca. 5500 to 4900/4500 and from ca. 2300 to 2000 14C yr BP), intercalated by two episodes of increased dryness with increased lagoon salinity (from ca. 4900/4500 to 2300 and from ca. 2000 to 1400 14C yr BP) were recorded in the Cabo Frio region. The changes in mangrove vegetation cannot be attributed to sea-level variations, for the three regressive and the two transgressive episodes identified for the Brazilian coast during this period are not in phase with the development of mangroves. The stability of the mainland vegetation ecosystem is probably due to the edaphic character of the coastal environments, which makes coastal formations much more resistant to climatic variations and less sensitive to climatic change. We propose that this environmental stability was a decisive factor in the maintenance of the fisher-gatherer-hunter sociocultural system.

Fish assemblage structure and habitat associations in a large western river system

USGS Publications Warehouse

Smith, C.D.; Quist, Michael C.; Hardy, R. S.

2016-01-01

Longitudinal gradients of fish assemblage and habitat structure were investigated in the Kootenai River of northern Idaho. A total of 43 500-m river reaches was sampled repeatedly with several techniques (boat-mounted electrofishing, hoop nets and benthic trawls) in the summers of 2012 and 2013. Differences in habitat and fish assemblage structure were apparent along the longitudinal gradient of the Kootenai River. Habitat characteristics (e.g. depth, substrate composition and water velocity) were related to fish assemblage structure in three different geomorphic river sections. Upper river sections were characterized by native salmonids (e.g. mountain whitefish Prosopium williamsoni), whereas native cyprinids (peamouth Mylocheilus caurinus, northern pikeminnow Ptychocheilus oregonensis) and non-native fishes (pumpkinseed Lepomis gibbosus, yellow perch Perca flavescens) were common in the downstream section. Overall, a general pattern of species addition from upstream to downstream sections was discovered and is likely related to increased habitat complexity and additions of non-native species in downstream sections. Assemblage structure of the upper sections were similar, but were both dissimilar to the lower section of the Kootenai River. Species-specific hurdle regressions indicated the relationships among habitat characteristics and the predicted probability of occurrence and relative abundance varied by species. Understanding fish assemblage structure in relation to habitat could improve conservation efforts of rare fishes and improve management of coldwater river systems.

Pollen evidence for late pleistocene bering land bridge environments from Norton Sound, Northeastern Bering Sea, Alaska

USGS Publications Warehouse

Ager, T.A.; Phillips, R.L.

2008-01-01

After more than half a century of paleoenvironmental investigations, disagreements persist as to the nature of vegetation type and climate of the Bering land bridge (BLB) during the late Wisconsin (Sartan) glacial interval. Few data exist from sites on the former land bridge, now submerged under the Bering and Chukchi Seas. Two hypotheses have emerged during the past decade. The first, based on pollen data from Bering Sea islands and adjacent mainlands of western Alaska and Northeast Siberia, represents the likely predominant vegetation on the Bering land bridge during full-glacial conditions: graminoid-herb-willow tundra vegetation associated with cold, dry winters and cool, dry summer climate. The second hypothesis suggests that dwarf birch-shrub-herb tundra formed a broad belt across the BLB, and that mesic vegetation was associated with cold, snowier winters and moist, cool summers. As a step towards resolving this controversy, a sediment core from Norton Sound, northeastern Bering Sea was radiocarbon dated and analyzed for pollen content. Two pollen zones were identified. The older, bracketed by radiocarbon ages of 29,500 and 11,515 14C yr BP, contains pollen assemblages composed of grass, sedge, wormwood, willow, and a variety of herb (forb) taxa. These assemblages are interpreted to represent graminoid-herb-willow tundra vegetation that developed under an arid, cool climate regime. The younger pollen zone sediments were deposited about 11,515 14C yr BP, when rising sea level had begun to flood the BLB. This younger pollen zone contains pollen of birch, willow, heaths, aquatic plants, and spores of sphagnum moss. This is interpreted to represent a Lateglacial dwarf birch-heath-willow-herb tundra vegetation, likely associated with a wetter climate with deeper winter snows, and moist, cool summers. This record supports the first hypothesis, that graminoid-herb-willow tundra vegetation extended into the lowlands of the BLB during full glacial conditions of the late Wisconsin. ?? 2008 Regents of the University of Colorado.

Effects of bromacil, diuron, glyphosate, and sulfometuron-methyl on periphyton assemblages and rainbow trout : final report.

DOT National Transportation Integrated Search

2003-01-01

This study documents the testing of several common herbicides used by the Oregon Department of Transportation in vegetation management. The project assessed the short- and long-term effects of Roundup, Krovar and Oust on periphyton and rainbow trout....

The endemic Patagonian vespertilionid assemblage is a depauperate ecomorphological vicariant of species-rich neotropical assemblages

PubMed Central

Giannini, Norberto P.

2017-01-01

Abstract Vespertilionidae is the most diverse chiropteran family, and its diversity is concentrated in warm regions of the World; however, due to physiological and behavioral adaptations, these bats also dominate bat faunas in temperate regions. Here we performed a comparative study of vespertilionid assemblages from two broad regions of the New World, the cold and harsh Patagonia, versus the remaining temperate-to-subtropical, extra-Patagonian eco-regions of the South American Southern Cone. We took an ecomorphological approach and analyzed the craniodental morphological structure of these assemblages within a phylogenetic framework. We measured 17 craniodental linear variables from 447 specimens of 22 currently recognized vespertilionid species of the study regions. We performed a multivariate analysis to define the morphofunctional space, and calculated the pattern and degree of species packing for each assemblage. We assessed the importance of phylogeny and biogeography, and their impact on depauperate (Patagonian) versus rich (extra-Patagonian) vespertilionid assemblages as determinants of morphospace structuring. We implemented a sensitivity analysis associated to small samples of rare species. The morphological patterns were determined chiefly by the evolutionary history of the family. The Patagonian assemblage can be described as a structurally similar but comparatively depauperate ecomorphological version of those assemblages from neighboring extra-Patagonian eco-regions. The Patagonian assemblage seems to have formed by successively adding populations from Northern regions that eventually speciated in the region, leaving corresponding sisters (vicariants) in extra-Patagonian eco-regions that continued to be characteristically richer. Despite being structurally akin, degree of species packing in Patagonia was comparatively very low, which may reflect the effect of limited dispersal success into a harsh region for bat survival. PMID:29492009

Soil Bacterial Community Shift Correlated with Change from Forest to Pasture Vegetation in a Tropical Soil

PubMed Central

Nüsslein, Klaus; Tiedje, James M.

1999-01-01

The change in vegetative cover of a Hawaiian soil from forest to pasture led to significant changes in the composition of the soil bacterial community. DNAs were extracted from both soil habitats and compared for the abundance of guanine-plus-cytosine (G+C) content, by analysis of abundance of phylotypes of small-subunit ribosomal DNA (SSU rDNA) amplified from fractions with 63 and 35% G+C contents, and by phylogenetic analysis of the dominant rDNA clones in the 63% G+C content fraction. All three methods showed differences between the forest and pasture habitats, providing evidence that vegetation had a strong influence on microbial community composition at three levels of taxon resolution. The forest soil DNA had a peak in G+C content of 61%, while the DNA of the pasture soil had a peak in G+C content of 67%. None of the dominant phylotypes found in the forest soil were detected in the pasture soil. For the 63% G+C fraction SSU rDNA sequence analysis of the three most dominant members revealed that their phyla changed from Fibrobacter and Syntrophomonas assemblages in the forest soil to Burkholderia and Rhizobium–Agrobacterium assemblages in the pasture soil. PMID:10427058

A global database of ant species abundances

USGS Publications Warehouse

Gibb, Heloise; Dunn, Rob R.; Sanders, Nathan J.; Grossman, Blair F.; Photakis, Manoli; Abril, Silvia; Agosti, Donat; Andersen, Alan N.; Angulo, Elena; Armbrecht, Ingre; Arnan, Xavier; Baccaro, Fabricio B.; Bishop, Tom R.; Boulay, Raphael; Bruhl, Carsten; Castracani, Cristina; Cerda, Xim; Del Toro, Israel; Delsinne, Thibaut; Diaz, Mireia; Donoso, David A.; Ellison, Aaron M.; Enriquez, Martha L.; Fayle, Tom M.; Feener Jr., Donald H.; Fisher, Brian L.; Fisher, Robert N.; Fitpatrick, Matthew C.; Gomez, Cristanto; Gotelli, Nicholas J.; Gove, Aaron; Grasso, Donato A.; Groc, Sarah; Guenard, Benoit; Gunawardene, Nihara; Heterick, Brian; Hoffmann, Benjamin; Janda, Milan; Jenkins, Clinton; Kaspari, Michael; Klimes, Petr; Lach, Lori; Laeger, Thomas; Lattke, John; Leponce, Maurice; Lessard, Jean-Philippe; Longino, John; Lucky, Andrea; Luke, Sarah H.; Majer, Jonathan; McGlynn, Terrence P.; Menke, Sean; Mezger, Dirk; Mori, Alessandra; Moses, Jimmy; Munyai, Thinandavha Caswell; Pacheco, Renata; Paknia, Omid; Pearce-Duvet, Jessica; Pfeiffer, Martin; Philpott, Stacy M.; Resasco, Julian; Retana, Javier; Silva, Rogerio R.; Sorger, Magdalena D.; Souza, Jorge; Suarez, Andrew V.; Tista, Melanie; Vasconcelos, Heraldo L.; Vonshak, Merav; Weiser, Michael D.; Yates, Michelle; Parr, Catherine L.

2017-01-01

What forces structure ecological assemblages? A key limitation to general insights about assemblage structure is the availability of data that are collected at a small spatial grain (local assemblages) and a large spatial extent (global coverage). Here, we present published and unpublished data from 51,388 ant abundance and occurrence records of more than 2693 species and 7953 morphospecies from local assemblages collected at 4212 locations around the world. Ants were selected because they are diverse and abundant globally, comprise a large fraction of animal biomass in most terrestrial communities, and are key contributors to a range of ecosystem functions. Data were collected between 1949 and 2014, and include, for each geo-referenced sampling site, both the identity of the ants collected and details of sampling design, habitat type and degree of disturbance. The aim of compiling this dataset was to provide comprehensive species abundance data in order to test relationships between assemblage structure and environmental and biogeographic factors. Data were collected using a variety of standardised methods, such as pitfall and Winkler traps, and will be valuable for studies investigating large-scale forces structuring local assemblages. Understanding such relationships is particularly critical under current rates of global change. We encourage authors holding additional data on systematically collected ant assemblages, especially those in dry and cold, and remote areas, to contact us and contribute their data to this growing dataset.

Anthropogenic disturbance and environmental associations with fish assemblage structure in two nonwadeable rivers

USGS Publications Warehouse

Parks, T. P.; Quist, Michael C.; Pierce, C.L.

2016-01-01

Nonwadeable rivers are unique ecosystems that support high levels of aquatic biodiversity, yet they have been greatly altered by human activities. Although riverine fish assemblages have been studied in the past, we still have an incomplete understanding of how fish assemblages respond to both natural and anthropogenic influences in large rivers. The purpose of this study was to evaluate associations between fish assemblage structure and reach-scale habitat, dam, and watershed land use characteristics. In the summers of 2011 and 2012, comprehensive fish and environmental data were collected from 33 reaches in the Iowa and Cedar rivers of eastern-central Iowa. Canonical correspondence analysis (CCA) was used to evaluate environmental relationships with species relative abundance, functional trait abundance (e.g. catch rate of tolerant species), and functional trait composition (e.g. percentage of tolerant species). On the basis of partial CCAs, reach-scale habitat, dam characteristics, and watershed land use features explained 25.0–81.1%, 6.2–25.1%, and 5.8–47.2% of fish assemblage variation, respectively. Although reach-scale, dam, and land use factors contributed to overall assemblage structure, the majority of fish assemblage variation was constrained by reach-scale habitat factors. Specifically, mean annual discharge was consistently selected in nine of the 11 CCA models and accounted for the majority of explained fish assemblage variance by reach-scale habitat. This study provides important insight on the influence of anthropogenic disturbances across multiple spatial scales on fish assemblages in large river systems.

Vegetation Response to Upper Pliocene Glacial/Interglacial Cyclicity in the Central Mediterranean

NASA Astrophysics Data System (ADS)

Combourieu-Nebout, Nathalie

1993-09-01

New detailed pollen analysis of the lower part of the Upper Pliocene Semaforo section (Crotone, Italy) documents cyclic behavior of vegetation at the beginning of the Northern Hemisphere glaciations. The competition between four vegetation units (subtropical humid forest, deciduous temperate forest, altitudinal coniferous forest, and open xeric assemblage) probably reflects modifications of vegetation belts at this montane site. Several increases in herbaceous open vegetation regularly alternate with subtropical humid forest, which expresses rapid climatic oscillations. The complete temporal succession—deciduous forest (rich in Quercus), followed by subtropical humid forest (Taxodiaceae and Cathaya), then altitudinal coniferous forest ( Tsuga, Cedrus, Abies, and Picea), and finally herbaceous open vegetation (Graminae, Compositae, and Artemisia )—displays the climatic evolution from warm and humid interglaciation to cold and dry glaciation. It also suggests an independent variation of temperature and humidity, the two main climatic parameters. The vegetation history of southern Calabria recorded in the Semaforo section have been correlated with the ∂ 18O signal established in the Atlantic Ocean.

Microanalysis of vitrous char and associated polymers: reference and ancient assemblages

NASA Astrophysics Data System (ADS)

Allue, E.; Bonnamy, S.; Courty, M. M.; Gispert I Guirado, F.

2012-12-01

Formation of vitrous char that occur in ancient charcoal assemblages have remained unsolved. Laboratory experiments refuted vitrification to resulting from high temperature charring of green or resinous wood. This puzzling problem has been refreshed by showing the association to the charcoal and vitrous char of plastics that were originally supposed to only be produced by petroleum industry. Extraction of similar polymers within geological glassy products from cosmic airbursts has suggested impact processes to possibly forming the carbonaceous polymorphs. The pulverisation at the ground in the Angles village (French Eastern Pyrenees) following the 2011 August 2nd high altitude meteor explosion of exotic debris with vitrous char and polymers, just alike the puzzling ones of the geological and archaeological records, has provided potential reference materials. We present here their microanalysis by Environmental SEM with EDS, Raman micro-spectrometry and FTIR, XRD, TEM, ICP-MS and isotope analyses. The characterization helps elucidating how the carbonaceous polymorphs formed by transient heating and transient high pressure of atmospheric aerosols. Under TEM the vesicular, dense, vitrous char show high structural organization with a dense pattern of nano-sized graphitized domains, metals and mineral inclusions. The coupled Raman-ESEM has allowed identifying a complex pattern at micro scales of ordered "D" peak at 1320-1350 cm-1 and the graphitic, ordered peak at 1576-1590 cm-1, in association to amorphous and poorly graphitic ordered carbon. The later occurs within plant cells that have been extracted from the dense vitrous char by performing controlled combustion under nitrogen up to 1000°C. In contrast, the brittle, vesicular vitrous char and the polymers encountered at the rear of the pulverised airburst debris reveal to be formed of agglutinated micro spherules of amorphous carbon with rare crystallized carbon nano-domains and scattered mineral inclusions. They completely vaporised at 300°C under stepped-heating without leaving extractable residues. The link established between the structure of these exceptional carbon polymorphs and their forming processes provide diagnostic keys for interpreting vitrous carbon in ancient charcoal assemblage. The hardest ones offer reliable impact markers with their distinctive nanostructure produced by the transient high pressure and heating of carbonaceous aerosols by cosmic airbursts. In contrast, the weakly graphitised ones with distinctive plant structures would possibly express moderate effects of the airburst shock wave on vegetation at the ground. Thus micro-structural characterization of charcoal in archaeological assemblages would help tracing possible exploitation of blasted wood forest and related fossil fuel produced by ancient cosmic airbursts.

Little effects of reduced-impact logging on insect communities in eastern Amazonia.

PubMed

Nogueira, Denis Silva; Calvão, Lenize Batista; de Assis Montag, Luciano Fogaça; Juen, Leandro; De Marco, Paulo

2016-07-01

Selective logging has become a major source of threats to tropical forest, bringing challenges for both ecologists and managers to develop low-impact forestry. Reduced-impact logging (RIL) is a prominent activity accounting for such forestry practices to prevent strong forest disturbances. Our aims were to evaluate the effects of RIL on insect communities of forested streams from Eastern Amazon and to test the hypothesis of negative effects of RIL on species richness, abundance, and functional feeding groups of aquatic insect assemblages. Neither of the evaluated metrics of the studied assemblages were negatively affected by RIL. Environmental metrics, such as substrate heterogeneity, woody canopy cover, and hill slope height, varied more among RIL streams than in reference streams, indicating a gradient according to logging impacts, and are suitable candidates to monitor RIL impacts in Amazonian streams. In addition, the PHI index also varied among REF and RIL, according to age class and year of logging, which could reflect trends to recover the forest structure after logging in a time frame of only 10 years. We conclude that RIL impacts have not had detrimental impacts on insect communities, but have changed little of the environmental conditions, especially of the riparian vegetation around streams.

Leaf Assemblages across the Cretaceous-Tertiary Boundary in the Raton Basin, New Mexico and Colorado

NASA Astrophysics Data System (ADS)

Wolfe, Jack A.; Upchurch, Garland R., Jr.

1987-08-01

Analyses of leaf megafossil and dispersed leaf cuticle assemblages indicate that major ecologic disruption and high rates of extinction occurred in plant communities at the Cretaceous-Tertiary boundary in the Raton Basin. In diversity increase, the early Paleocene vegetational sequence mimics normal short-term ecologic succession, but on a far longer time scale. No difference can be detected between latest Cretaceous and early Paleocene temperatures, but precipitation markedly increased at the boundary. Higher survival rate of deciduous versus evergreen taxa supports occurrence of a brief cold interval (<1 year), as predicted in models of an “impact winter.”

North American nonmarine climates and vegetation during the Late Cretaceous

USGS Publications Warehouse

Wolfe, J.A.; Upchurch, G.R.

1987-01-01

Analyses of physiognomy of Late Cretaceous leaf assemblages and of structural adaptations of Late Cretaceous dicotyledonous woods indicate that megathermal vegetation was an open-canopy, broad-leaved evergreen woodland that existed under low to moderate amounts of rainfall evenly distributed through the year, with a moderate increase at about 40-45??N. Many dicotyledons were probably large, massive trees, but the tallest trees were evergreen conifers. Megathermal climate extended up to paleolatitude 45-50??N. Mesothermal vegetation was at least partially an open, broad-leaved evergreen woodland (perhaps a mosaic of woodland and forest), but the evapotranspirational stress was less than in megathermal climate. Some dicotyledons were large trees, but most were shrubs or small trees; evergreen conifers were the major tree element. Some mild seasonality is evidenced in mesothermal woods; precipitational levels probably varied markedly from year to year. Northward of approximately paleolatitude 65??N, evergreen vegetation was replaced by predominantly deciduous vegetation. This replacement is presumably related primarily to seasonality of light. The southern part of the deciduous vegetation probably existed under mesothermal climate. Comparisons to leaf and wood assemblages from other continents are generally consistent with the vegetational-climatic patterns suggested from North American data. Limited data from equatorial regions suggest low rainfall. Late Cretaceous climates, except probably those of the Cenomanian, had only moderate change through time. Temperatures generally appear to have warmed into the Santonian, cooled slightly into the Campanian and more markedly into the Maastrichtian, and then returned to Santonian values by the late Maastrichtian. The early Eocene was probably warmer than any period of the Late Cretaceous. Latitudinal temperature gradients were lower than at present. For the Campanian and Maastrichtian, a gradient of about 0.3??C/1?? latitude is inferred. Equability was high: a mean annual range of temperature of about 8??C is inferred for paleolatitude 51-56??N during the Campanian. Most Late Cretaceous plants evolved in a climate characterized by absence of freezing and low to moderate amounts of precipitation. A brief, low-temperature excursion and a major, long-lasting increase in precipitation occurred at the Cretaceous-Tertiary boundary. In megathermal climates, these events selected for plants that could exist in rainforest environments. In mesothermal climates, deciduousness and contamitant structural adaptations were selected. The events at the Cretaceous-Tertiary boundary had a major and long-lasting impact on the evolution of land plants and their ecosystems. Low precipitation at low to middle Late Cretaceous latitudes is suggested to be the result of high levels of atmospheric CO2, which, in turn, are probably related to inability of warm, saline oceans to store large amounts of carbon. Conditions appear to have rapidly changed at the Cretaceous-Tertiary boundary, when oceanic circulation and stratification may have been fundamentally altered. After the boundary, the oceans were apparently able to store much greater amounts of carbon, and the oceans withdrew large amounts of CO2 from the atmosphere. In turn, more precipitation fell at low to middle latitudes; the resulting high-biomass vegetation formed a second major carbon reservoir to keep atmospheric CO2 low relative to the Late Cretaceous. Changes in oceanic and atmospheric circulation probably resulted from some factor external to the ocean-atmosphere system. ?? 1987.

Towards restoration of Hawaiian tropical dry forests: the Kaupulehu outplanting programme

Treesearch

Susan Cordell; Moana McClellan; Yvonne Yarber Carter; Lisa J. Hadway

2008-01-01

Hawaiian tropical dry forests contain diverse assemblages of woody canopy species, including many endemic and endangered species that warrant conservation attention before completely disappearing. Today, tropical dry forests in Hawaii are not viable ecosystems. Poor land use practices, fragmentation, non-native plant invasions, and inadequate native vegetation...

Mesozoic thermal history and timing of structural events for the Yukon-Tanana Upland, east-central Alaska: 40Ar/39Ar data from metamorphic and plutonic rocks

USGS Publications Warehouse

Dusel-Bacon, C.; Lanphere, M.A.; Sharp, W.D.; Layer, P.W.; Hansen, V.L.

2002-01-01

We present new 40Ar/39Ar ages for hornblende, muscovite, and biotite from metamorphic and plutonic rocks from the Yukon-Tanana Upland, Alaska. Integration of our data with published 40Ar/39Ar, kinematic, and metamorphic pressure (P) and temperature (T) data confirms and refines the complex interaction of metamorphism and tectonism proposed for the region. The oldest metamorphic episode(s) postdates Middle Permian magmatism and predates the intrusion of Late Triassic (215-212 Ma) granitoids into the Fortymile River assemblage (Taylor Mountain assemblage of previous papers). In the eastern Eagle quadrangle, rapid and widespread Early Jurassic cooling is indicated by ???188-186 Ma 40Ar/39Ar plateau ages for hornblende from plutons that intrude the Fortymile River assemblage, and for metamorphic minerals from the Fortymile River assemblage and the structurally underlying Nasina assemblage. We interpret these Early Jurassic ages to represent cooling resulting from northwest-directed contraction that emplaced the Fortymile River assemblage onto the Nasina assemblage to the north as well as the Lake George assemblage to the south. This cooling was the final stage of a continuum of subduction-related contraction that produced crustal thickening, intermediate- to high-P metamorphism within both the Fortymile River assemblage and the structurally underlying Lake George assemblage, and Late Triassic and Early Jurassic plutonism in the Fortymile River and Nasina assemblages. Although a few metamorphic samples from the Lake George assemblage yield Jurassic 40Ar/39Ar cooling ages, most yield Early Cretaceous 40Ar/39Ar ages: hornblende ???135-115 Ma, and muscovite and biotite ???110-108 Ma. We interpret the Early Cretaceous metamorphic cooling, in most areas, to have resulted from regional extension and exhumation of the lower plate, previously tectonically thickened during Early Jurassic and older convergence.

Disentangling how landscape spatial and temporal heterogeneity affects Savanna birds.

PubMed

Price, Bronwyn; McAlpine, Clive A; Kutt, Alex S; Ward, Doug; Phinn, Stuart R; Ludwig, John A

2013-01-01

In highly seasonal tropical environments, temporal changes in habitat and resources are a significant determinant of the spatial distribution of species. This study disentangles the effects of spatial and mid to long-term temporal heterogeneity in habitat on the diversity and abundance of savanna birds by testing four competing conceptual models of varying complexity. Focussing on sites in northeast Australia over a 20 year time period, we used ground cover and foliage projected cover surfaces derived from a time series of Landsat Thematic Mapper imagery, rainfall data and site-level vegetation surveys to derive measures of habitat structure at local (1-100 ha) and landscape (100-1000s ha) scales. We used generalised linear models and an information theoretic approach to test the independent effects of spatial and temporal influences on savanna bird diversity and the abundance of eight species with different life-history behaviours. Of four competing models defining influences on assemblages of savanna birds, the most parsimonious included temporal and spatial variability in vegetation cover and site-scale vegetation structure, suggesting savanna bird species respond to spatial and temporal habitat heterogeneity at both the broader landscape scale and at the fine-scale. The relative weight, strength and direction of the explanatory variables changed with each of the eight species, reflecting their different ecology and behavioural traits. This study demonstrates that variations in the spatial pattern of savanna vegetation over periods of 10 to 20 years at the local and landscape scale strongly affect bird diversity and abundance. Thus, it is essential to monitor and manage both spatial and temporal variability in avian habitat to achieve long-term biodiversity outcomes.

Disentangling How Landscape Spatial and Temporal Heterogeneity Affects Savanna Birds

PubMed Central

Price, Bronwyn; McAlpine, Clive A.; Kutt, Alex S.; Ward, Doug; Phinn, Stuart R.; Ludwig, John A.

2013-01-01

In highly seasonal tropical environments, temporal changes in habitat and resources are a significant determinant of the spatial distribution of species. This study disentangles the effects of spatial and mid to long-term temporal heterogeneity in habitat on the diversity and abundance of savanna birds by testing four competing conceptual models of varying complexity. Focussing on sites in northeast Australia over a 20 year time period, we used ground cover and foliage projected cover surfaces derived from a time series of Landsat Thematic Mapper imagery, rainfall data and site-level vegetation surveys to derive measures of habitat structure at local (1–100 ha) and landscape (100–1000s ha) scales. We used generalised linear models and an information theoretic approach to test the independent effects of spatial and temporal influences on savanna bird diversity and the abundance of eight species with different life-history behaviours. Of four competing models defining influences on assemblages of savanna birds, the most parsimonious included temporal and spatial variability in vegetation cover and site-scale vegetation structure, suggesting savanna bird species respond to spatial and temporal habitat heterogeneity at both the broader landscape scale and at the fine-scale. The relative weight, strength and direction of the explanatory variables changed with each of the eight species, reflecting their different ecology and behavioural traits. This study demonstrates that variations in the spatial pattern of savanna vegetation over periods of 10 to 20 years at the local and landscape scale strongly affect bird diversity and abundance. Thus, it is essential to monitor and manage both spatial and temporal variability in avian habitat to achieve long-term biodiversity outcomes. PMID:24066138

Structure of mangrove meiofaunal assemblages associated with local sediment conditions in subtropical eastern australia

NASA Astrophysics Data System (ADS)

Abdullah, Maizah M.; Lee, S. Y.

2017-11-01

Meiofauna are ubiquitous but poorly-studied components of soft-bottom marine habitats around the world, including mangroves. The dynamic environmental conditions and heterogeneous sediments of mangroves present challenges to understanding the structure of mangrove meiofaunal assemblages at various spatial and temporal scales. In this study, we investigated the meiofaunal assemblage structure of sediments colonised by three mangrove species, namely, Avicennia marina, Rhizophora stylosa and Aegiceras corniculatum, at three locations in subtropical eastern Australia. Spatial and temporal variations were tested by sampling at the three mangrove locations (i.e. Tallebudgera, Currumbin and Terranora) in autumn, with samplings repeated at Tallebudgera at two other times broadly representing during dry/cool winter and wet/hot summer seasons. We examined the variability of the sediment environments within each of the different mangrove species, and investigated how meiofaunal assemblages would respond to the particular changes in their habitats to result in differences in assemblage structure between and within sites. Total meiofaunal density was highest in Tallebudgera and Currumbin and lowest in Terranora (mean density of 424, 393 and 239 ind.10 cm-2, respectively). In Tallebudgera, the density was higher in winter and summer (mean density of 546 and 530 ind.10 cm-2, respectively). The meiofaunal assemblage in this study shows a trend and association with the environmental variables. High availability of food proxies such phaeopigments, Chl a or TOC, with moderate tannin content and appropriate habitat structure (sediment particle size, belowground root biomass and/or moisture content provide the best condition for the meiofauna to achieve the highest density. However, given the complex dynamic habitats and the spatial heterogeneity of the mangrove environments across different locations and seasons, no clear generalization could be made regarding the key environmental variables that predominantly shape the meiofaunal assemblages' structure.

Vegetation response to climate change in Alaska: examples from the fossil record

USGS Publications Warehouse

Ager, Thomas A.

2007-01-01

Preface: This report was presented as an invited paper at the Fish & Wildlife Service Climate Forum held in Anchorage, Alaska on February 21-23, 2007. The purpose of the talk was to provide some examples of past climate changes that appear to have caused significant responses in Alaskan vegetation. These examples are based on interpretations of dated fossil assemblages (pollen, spores and plant macrofossils) collected and interpreted by U.S. Geological Survey and collaborating scientists from other scientific organizations during the past several decades.

Archeological Test Excavations at The Lake Acworth Site (9Co45) and The Butler Creek (9Co46) Sites: Two Prehistric Settlements in the Piedmont Uplands, Allatoona Lake, Cobb County, Georgia

DTIC Science & Technology

1991-10-31

type are oak, hickory, sweetgum, blackgum, red maple, winged elm, and a variety of pines. Dogwood and woody vines are common understory vegetation...and a variety of pines. Dogwood and woody vines are common understory vegetation (USDA 1980: 25). Although the assemblage of identified wood from...hickory as co-dominants. Subcanopy tree species included mulberry, red bud, ironwood, and dogwood, while shrubs consisted of French mulberry and

A global database of ant species abundances.

PubMed

Gibb, Heloise; Dunn, Rob R; Sanders, Nathan J; Grossman, Blair F; Photakis, Manoli; Abril, Silvia; Agosti, Donat; Andersen, Alan N; Angulo, Elena; Armbrecht, Inge; Arnan, Xavier; Baccaro, Fabricio B; Bishop, Tom R; Boulay, Raphaël; Brühl, Carsten; Castracani, Cristina; Cerda, Xim; Del Toro, Israel; Delsinne, Thibaut; Diaz, Mireia; Donoso, David A; Ellison, Aaron M; Enriquez, Martha L; Fayle, Tom M; Feener, Donald H; Fisher, Brian L; Fisher, Robert N; Fitzpatrick, Matthew C; Gómez, Crisanto; Gotelli, Nicholas J; Gove, Aaron; Grasso, Donato A; Groc, Sarah; Guenard, Benoit; Gunawardene, Nihara; Heterick, Brian; Hoffmann, Benjamin; Janda, Milan; Jenkins, Clinton; Kaspari, Michael; Klimes, Petr; Lach, Lori; Laeger, Thomas; Lattke, John; Leponce, Maurice; Lessard, Jean-Philippe; Longino, John; Lucky, Andrea; Luke, Sarah H; Majer, Jonathan; McGlynn, Terrence P; Menke, Sean; Mezger, Dirk; Mori, Alessandra; Moses, Jimmy; Munyai, Thinandavha Caswell; Pacheco, Renata; Paknia, Omid; Pearce-Duvet, Jessica; Pfeiffer, Martin; Philpott, Stacy M; Resasco, Julian; Retana, Javier; Silva, Rogerio R; Sorger, Magdalena D; Souza, Jorge; Suarez, Andrew; Tista, Melanie; Vasconcelos, Heraldo L; Vonshak, Merav; Weiser, Michael D; Yates, Michelle; Parr, Catherine L

2017-03-01

What forces structure ecological assemblages? A key limitation to general insights about assemblage structure is the availability of data that are collected at a small spatial grain (local assemblages) and a large spatial extent (global coverage). Here, we present published and unpublished data from 51 ,388 ant abundance and occurrence records of more than 2,693 species and 7,953 morphospecies from local assemblages collected at 4,212 locations around the world. Ants were selected because they are diverse and abundant globally, comprise a large fraction of animal biomass in most terrestrial communities, and are key contributors to a range of ecosystem functions. Data were collected between 1949 and 2014, and include, for each geo-referenced sampling site, both the identity of the ants collected and details of sampling design, habitat type, and degree of disturbance. The aim of compiling this data set was to provide comprehensive species abundance data in order to test relationships between assemblage structure and environmental and biogeographic factors. Data were collected using a variety of standardized methods, such as pitfall and Winkler traps, and will be valuable for studies investigating large-scale forces structuring local assemblages. Understanding such relationships is particularly critical under current rates of global change. We encourage authors holding additional data on systematically collected ant assemblages, especially those in dry and cold, and remote areas, to contact us and contribute their data to this growing data set. © 2016 by the Ecological Society of America.

Last Glacial vegetation and climate change in the southern Levant

NASA Astrophysics Data System (ADS)

Miebach, Andrea; Chen, Chunzhu; Litt, Thomas

2015-04-01

Reconstructing past climatic and environmental conditions is a key task for understanding the history of modern mankind. The interaction between environmental change and migration processes of the modern Homo sapiens from its source area in Africa into Europe is still poorly understood. The principal corridor of the first human dispersal into Europe and also later migration dynamics crossed the Middle East. Therefore, the southern Levant is a key area to investigate the paleoenvironment during times of human migration. In this sense, the Last Glacial (MIS 4-2) is particularly interesting to investigate for two reasons. Firstly, secondary expansions of the modern Homo sapiens are expected to occur during this period. Secondly, there are ongoing discussions on the environmental conditions causing the prominent lake level high stand of Lake Lisan, the precursor of the Dead Sea. This high stand even culminated in the merging of Lake Lisan and Lake Kinneret (Sea of Galilee). To provide an independent proxy for paleoenvironmental reconstructions in the southern Levant during the Last Glacial, we investigated pollen assemblages of the Dead Sea/Lake Lisan and Lake Kinneret. Located at the Dead Sea Transform, the freshwater Lake Kinneret is nowadays connected via the Jordan with the hypersaline Dead Sea, which occupies Earth's lowest elevation on land. The southern Levant is a transition area of three different vegetation types. Therefore, also small changes in the climate conditions effect the vegetation and can be registered in the pollen assemblage. In contrast to the Holocene, our preliminary results suggest another vegetation pattern during the Last Glacial. The vegetation belt of the fragile Mediterranean biome did no longer exist in the vicinity of Lake Kinneret. Moreover, the vegetation was rather similar in the whole study area. A steppe vegetation with dwarf shrubs, herbs, and grasses predominated. Thermophilous elements like oaks occurred in limited amounts. The limiting factor for tree growth was precipitation. Consequently, the precipitation gradient was not as strong as today, and semiarid conditions prevailed in the southern Levant during the Last Glacial. Our study will contribute to the overall aim to reconstruct the way of modern humans to Europe and to understand the complex connection between climate and vegetation change in the Eastern Mediterranean.

Anopheles species associations in Southeast Asia: indicator species and environmental influences.

PubMed

Obsomer, Valérie; Dufrene, Marc; Defourny, Pierre; Coosemans, Marc

2013-05-04

Southeast Asia presents a high diversity of Anopheles. Environmental requirements differ for each species and should be clarified because of their influence on malaria transmission potential. Monitoring projects collect vast quantities of entomological data over the whole region and could bring valuable information to malaria control staff but collections are not always standardized and are thus difficult to analyze. In this context studying species associations and their relation to the environment offer some opportunities as they are less subject to sampling error than individual species. Using asymmetrical similarity coefficients, indirect clustering and the search of indicator species, this paper identified species associations. Environmental influences were then analysed through canonical and discriminant analysis using climatic and topographic data, land cover in a 3 km buffer around villages and vegetation indices. Six groups of sites characterized the structure of the species assemblage. Temperature, rainfall and vegetation factors all play a role. Four out of the six groups of sites based on species similarities could be discriminated using environmental information only. Vegetation indices derived from satellite imagery proved very valuable with one variable explaining more variance of the species dataset than any other variable. The analysis could be improved by integrating seasonality in the sampling and collecting at least 4 consecutive days.

Disentangling effects of abiotic factors and biotic interactions on cross-taxon congruence in species turnover patterns of plants, moths and beetles.

PubMed

Duan, Meichun; Liu, Yunhui; Yu, Zhenrong; Baudry, Jacques; Li, Liangtao; Wang, Changliu; Axmacher, Jan C

2016-04-01

High cross-taxon congruence in species diversity patterns is essential for the use of surrogate taxa in biodiversity conservation, but presence and strength of congruence in species turnover patterns, and the relative contributions of abiotic environmental factors and biotic interaction towards this congruence, remain poorly understood. In our study, we used variation partitioning in multiple regressions to quantify cross-taxon congruence in community dissimilarities of vascular plants, geometrid and arciinid moths and carabid beetles, subsequently investigating their respective underpinning by abiotic factors and biotic interactions. Significant cross-taxon congruence observed across all taxon pairs was linked to their similar responses towards elevation change. Changes in the vegetation composition were closely linked to carabid turnover, with vegetation structure and associated microclimatic conditions proposed causes of this link. In contrast, moth assemblages appeared to be dominated by generalist species whose turnover was weakly associated with vegetation changes. Overall, abiotic factors exerted a stronger influence on cross-taxon congruence across our study sites than biotic interactions. The weak congruence in turnover observed particularly between plants and moths highlights the importance of multi-taxon approaches based on groupings of taxa with similar turnovers, rather than the use of single surrogate taxa or environmental proxies, in biodiversity assessments.

Disentangling effects of abiotic factors and biotic interactions on cross-taxon congruence in species turnover patterns of plants, moths and beetles

PubMed Central

Duan, Meichun; Liu, Yunhui; Yu, Zhenrong; Baudry, Jacques; Li, Liangtao; Wang, Changliu; Axmacher, Jan C.

2016-01-01

High cross-taxon congruence in species diversity patterns is essential for the use of surrogate taxa in biodiversity conservation, but presence and strength of congruence in species turnover patterns, and the relative contributions of abiotic environmental factors and biotic interaction towards this congruence, remain poorly understood. In our study, we used variation partitioning in multiple regressions to quantify cross-taxon congruence in community dissimilarities of vascular plants, geometrid and arciinid moths and carabid beetles, subsequently investigating their respective underpinning by abiotic factors and biotic interactions. Significant cross-taxon congruence observed across all taxon pairs was linked to their similar responses towards elevation change. Changes in the vegetation composition were closely linked to carabid turnover, with vegetation structure and associated microclimatic conditions proposed causes of this link. In contrast, moth assemblages appeared to be dominated by generalist species whose turnover was weakly associated with vegetation changes. Overall, abiotic factors exerted a stronger influence on cross-taxon congruence across our study sites than biotic interactions. The weak congruence in turnover observed particularly between plants and moths highlights the importance of multi-taxon approaches based on groupings of taxa with similar turnovers, rather than the use of single surrogate taxa or environmental proxies, in biodiversity assessments. PMID:27032533

Ecological site-based assessments of wind and water erosion: informing accelerated soil erosion management in rangelands

USGS Publications Warehouse

Webb, Nicholas P.; Herrick, Jeffrey E.; Duniway, Michael C.

2014-01-01

Accelerated soil erosion occurs when anthropogenic processes modify soil, vegetation or climatic conditions causing erosion rates at a location to exceed their natural variability. Identifying where and when accelerated erosion occurs is a critical first step toward its effective management. Here we explore how erosion assessments structured in the context of ecological sites (a land classification based on soils, landscape setting and ecological potential) and their vegetation states (plant assemblages that may change due to management) can inform systems for reducing accelerated soil erosion in rangelands. We evaluated aeolian horizontal sediment flux and fluvial sediment erosion rates for five ecological sites in southern New Mexico, USA, using monitoring data and rangeland-specific wind and water erosion models. Across the ecological sites, plots in shrub-encroached and shrub-dominated vegetation states were consistently susceptible to aeolian sediment flux and fluvial sediment erosion. Both processes were found to be highly variable for grassland and grass-succulent states across the ecological sites at the plot scale (0.25 Ha). We identify vegetation thresholds that define cover levels below which rapid (exponential) increases in aeolian sediment flux and fluvial sediment erosion occur across the ecological sites and vegetation states. Aeolian sediment flux and fluvial erosion in the study area can be effectively controlled when bare ground cover is 100 cm in length is less than ~35%. Land use and management activities that alter cover levels such that they cross thresholds, and/or drive vegetation state changes, may increase the susceptibility of areas to erosion. Land use impacts that are constrained within the range of natural variability should not result in accelerated soil erosion. Evaluating land condition against the erosion thresholds identified here will enable identification of areas susceptible to accelerated soil erosion and the development of practical management solutions.

Land use structures fish assemblages in reservoirs of the Tennessee River

USGS Publications Warehouse

Miranda, Leandro E.; Bies, J. M.; Hann, D. A.

2015-01-01

Inputs of nutrients, sediments and detritus from catchments can promote selected components of reservoir fish assemblages, while hindering others. However, investigations linking these catchment subsidies to fish assemblages have generally focussed on one or a handful of species. Considering this paucity of community-level awareness, we sought to explore the association between land use and fish assemblage composition in reservoirs. To this end, we compared fish assemblages in reservoirs of two sub-basins of the Tennessee River representing differing intensities of agricultural development, and hypothesised that fish assemblage structure indicated by species percentage composition would differ among reservoirs in the two sub-basins. Using multivariate statistical analysis, we documented inter-basin differences in land use, reservoir productivity and fish assemblages, but no differences in reservoir morphometry or water regime. Basins were separated along a gradient of forested and non-forested catchment land cover, which was directly related to total nitrogen, total phosphorous and chlorophyll-a concentrations. Considering the extensive body of knowledge linking land use to aquatic systems, it is reasonable to postulate a hierarchical model in which productivity has direct links to terrestrial inputs, and fish assemblages have direct links to both land use and productivity. We observed a shift from an invertivore-based fish assemblage in forested catchments to a detritivore-based fish assemblage in agricultural catchments that may be a widespread pattern among reservoirs and other aquatic ecosystems.

Hydrologic filtering of fish life history strategies across the United States: implications for stream flow alteration

DOE PAGES

McManamay, Ryan A.; Frimpong, Emmanuel A.

2015-01-01

Lotic fish have developed life history strategies adapted to the natural variation in stream flow regimes. The natural timing, duration, and magnitude of flow events has contributed to the diversity, production, and composition of fish assemblages over time. Studies evaluating the role of hydrology in structuring fish assemblages have been more common at the local or regional scale with very few studies conducted at the continental scale. Furthermore, quantitative linkages between natural hydrologic patterns and fish assemblages are rarely used to make predictions of ecological consequences of hydrologic alterations. We ask two questions: (1) what is the relative role ofmore » hydrology in structuring fish assemblages at large scales? and (2) can relationships between fish assemblages and natural hydrology be utilized to predict fish assemblage responses to hydrologic disturbance? We developed models to relate fish life histories and reproductive strategies to landscape and hydrologic variables separately and then combined. Models were then used to predict the ecological consequences of altered hydrology due to dam regulation. Although hydrology plays a considerable role in structuring fish assemblages, the performance of models using only hydrologic variables was lower than that of models constructed using landscape variables. Isolating the relative importance of hydrology in structuring fish assemblages at the continental scale is difficult since hydrology is interrelated to many landscape factors. By applying models to dam-regulated hydrologic data, we observed some consistent predicted responses in fish life history strategies and modes of reproduction. In agreement with existing literature, equilibrium strategists are predicted to increase following dam regulation, whereas opportunistic and periodic species are predicted to decrease. In addition, dam regulation favors the selection of reproductive strategies with extended spawning seasons and preference for stable conditions.« less

Hydrologic filtering of fish life history strategies across the United States: implications for stream flow alteration

DOE Office of Scientific and Technical Information (OSTI.GOV)

McManamay, Ryan A.; Frimpong, Emmanuel A.

Lotic fish have developed life history strategies adapted to the natural variation in stream flow regimes. The natural timing, duration, and magnitude of flow events has contributed to the diversity, production, and composition of fish assemblages over time. Studies evaluating the role of hydrology in structuring fish assemblages have been more common at the local or regional scale with very few studies conducted at the continental scale. Furthermore, quantitative linkages between natural hydrologic patterns and fish assemblages are rarely used to make predictions of ecological consequences of hydrologic alterations. We ask two questions: (1) what is the relative role ofmore » hydrology in structuring fish assemblages at large scales? and (2) can relationships between fish assemblages and natural hydrology be utilized to predict fish assemblage responses to hydrologic disturbance? We developed models to relate fish life histories and reproductive strategies to landscape and hydrologic variables separately and then combined. Models were then used to predict the ecological consequences of altered hydrology due to dam regulation. Although hydrology plays a considerable role in structuring fish assemblages, the performance of models using only hydrologic variables was lower than that of models constructed using landscape variables. Isolating the relative importance of hydrology in structuring fish assemblages at the continental scale is difficult since hydrology is interrelated to many landscape factors. By applying models to dam-regulated hydrologic data, we observed some consistent predicted responses in fish life history strategies and modes of reproduction. In agreement with existing literature, equilibrium strategists are predicted to increase following dam regulation, whereas opportunistic and periodic species are predicted to decrease. In addition, dam regulation favors the selection of reproductive strategies with extended spawning seasons and preference for stable conditions.« less

Interactive effects of fire and large herbivores on web-building spiders.

PubMed

Foster, C N; Barton, P S; Wood, J T; Lindenmayer, D B

2015-09-01

Altered disturbance regimes are a major driver of biodiversity loss worldwide. Maintaining or re-creating natural disturbance regimes is therefore the focus of many conservation programmes. A key challenge, however, is to understand how co-occurring disturbances interact to affect biodiversity. We experimentally tested for the interactive effects of prescribed fire and large macropod herbivores on the web-building spider assemblage of a eucalypt forest understorey and investigated the role of vegetation in mediating these effects using path analysis. Fire had strong negative effects on the density of web-building spiders, which were partly mediated by effects on vegetation structure, while negative effects of large herbivores on web density were not related to changes in vegetation. Fire amplified the effects of large herbivores on spiders, both via vegetation-mediated pathways and by increasing herbivore activity. The importance of vegetation-mediated pathways and fire-herbivore interactions differed for web density and richness and also differed between web types. Our results demonstrate that for some groups of web-building spiders, the effects of co-occurring disturbance drivers may be mostly additive, whereas for other groups, interactions between drivers can amplify disturbance effects. In our study system, the use of prescribed fire in the presence of high densities of herbivores could lead to reduced densities and altered composition of web-building spiders, with potential cascading effects through the arthropod food web. Our study highlights the importance of considering both the independent and interactive effects of disturbances, as well as the mechanisms driving their effects, in the management of disturbance regimes.

Temporal changes in taxonomic and functional diversity of fish assemblages downstream from mountaintop mining

USGS Publications Warehouse

Hitt, Nathaniel P.; Chambers, Douglas B.

2014-01-01

Mountaintop mining (MTM) affects chemical, physical, and hydrological properties of receiving streams, but the long-term consequences for fish-assemblage structure and function are poorly understood. We sampled stream fish assemblages using electrofishing techniques in MTM exposure sites and reference sites within the Guyandotte River basin, USA, during 2010–2011. We calculated indices of taxonomic diversity (species richness, abundance, Shannon diversity) and functional diversity (functional richness, functional evenness, functional divergence) to compare exposure and reference assemblages between seasons (spring and autumn) and across years (1999–2011). We based temporal comparisons on 2 sites that were sampled during 1999–2001 by Stauffer and Ferreri (2002). Exposure assemblages had lower taxonomic and functional diversity than reference assemblages or simulated assemblages that accounted for random variation. Differences in taxonomic composition between reference and exposure assemblages were associated with conductivity and aqueous Se concentrations. Exposure assemblages had fewer species, lower abundances, and less biomass than reference assemblages across years and seasons. Green Sunfish (Lepomis cyanellus) and Creek Chub (Semotilus atromaculatus) became numerically dominant in exposure assemblages over time because of their persistence and losses of other taxa. In contrast, species richness increased over time in reference assemblages, a result that may indicate recovery from drought. Mean individual biomass increased as fish density decreased and most obligate invertivores were apparently extirpated at MTM exposure sites. Effects of MTM were not related to physical-habitat conditions but were associated with water-quality variables, which may limit quality and availability of benthic macroinvertebrate prey. Simulations revealed effects of MTM that could not be attributed to random variation in fish assemblage structure.

Influential environmental gradients and spatiotemporal patterns of fish assemblages in the unimpounded Upper Mississippi River

USGS Publications Warehouse

Barko, V.A.; Palmer, M.W.; Herzog, D.P.; Ickes, B.S.

2004-01-01

We investigated variation of fish assemblages in response to environmental factors using Long Term Resource Monitoring Program data. Data were collected from 1993 to 2000 from five physical habitats in the unimpounded upper Mississippi River. We captured 89 species composing 18 families. Of these, 26% were fluvial specialists, 25% were fluvial dependent and 49% were generalists. The numerically dominant component of the adult fish assemblage (species accounting for >10% of total catch) accounted for 50% of the assemblage and was comprised of only three species: gizzard shad (Dorosoma cepedianum; 25%), common carp (Cyprinus carpio, 15%) and channel catfish (Ictalurus punctatus, 10%). The dominant component of the YOY fish assemblage was comprised of only two species, which accounted for 76% of the total catch: freshwater drum (Aplodinotus grunniens; 39%) and gizzard shad (37%). We used a cross-validation multivariate approach to explore how adult and young-of-the-year (YOY) assemblages varied with respect. to physical habitat and environmental gradients. Furthermore, we were interested how the fish assemblages changed over time. Partial canonical correspondence analyses (pCCA) demonstrated significant effects of physical habitats. Such effects differed between young-of-the-year and adult fishes. The four main environmental gradients influencing overall assemblage structure for both age groups were river elevation, water velocity, conductivity, and depth of gear deployment. Morisita's index revealed similar adult assemblage structure over time. However, the YOY assemblage present in 1995 was dissimilar from assemblages present during the other years. We speculate this is a lag effect from the backwater spawning episodes (floodpulse) that occurred with the 500-y flood in 1993. Shannon-Weiner diversity and Camargo's evenness indices were low, but stable across years for the adult assemblage, but varied across years for the YOY assemblage.

Fish assemblage responses to forest cover

Treesearch

Chris L. Burcher; Matthew E. McTammany; E. Fred Benfield; Gene S. Helfman

2008-01-01

We investigated whether fish assemblage structure in southern Appalachian streams differed with historical and contemporary forest cover. We compared fish assemblages in 2nd?4th order streams draining watersheds that had increased forest cover between 1950 and 1993 (i.e., reforesting watersheds).

Patterns of fish assemblage structure and habitat use among main- and side-channel environments in the lower Kootenai River, Idaho

USGS Publications Warehouse

Watkins, Carson J.; Stevens, Bryan S.; Quist, Michael C.; Shepard, Bradley B.; Ireland, Susan C.

2015-01-01

The lower Kootenai River, Idaho, was sampled during the summers of 2012 and 2013 to evaluate its fish assemblage structure at seven sites within main- and side-channel habitats where large-scale habitat rehabilitation was undertaken. Understanding the current patterns of fish assemblage structure and their relationships with habitat is important for evaluating the effects of past and future rehabilitation projects on the river. Species-specific habitat associations were modeled, and the variables that best explained the occurrence and relative abundance of fish were identified in order to guide future habitat rehabilitation so that it benefits native species. The results indicated that the side-channel habitats supported higher species richness than the main-channel habitats and that nonnative fishes were closely associated with newly rehabilitated habitats. This research provides valuable insight on the current fish assemblages in the Kootenai River and the assemblage-level responses that may occur as a result of future rehabilitation activities.

Increasing functional modularity with residence time in the co-distribution of native and introduced vascular plants

PubMed Central

Hui, Cang; Richardson, David M.; Pyšek, Petr; Le Roux, Johannes J.; Kučera, Tomáš; Jarošík, Vojtěch

2013-01-01

Species gain membership of regional assemblages by passing through multiple ecological and environmental filters. To capture the potential trajectory of structural changes in regional meta-communities driven by biological invasions, one can categorize species pools into assemblages of different residence times. Older assemblages, having passed through more environmental filters, should become more functionally ordered and structured. Here we calculate the level of compartmentalization (modularity) for three different-aged assemblages (neophytes, introduced after 1500 AD; archaeophytes, introduced before 1500 AD, and natives), including 2,054 species of vascular plants in 302 reserves in central Europe. Older assemblages are more compartmentalized than younger ones, with species composition, phylogenetic structure and habitat characteristics of the modules becoming increasingly distinctive. This sheds light on two mechanisms of how alien species are functionally incorporated into regional species pools: the settling-down hypothesis of diminishing stochasticity with residence time, and the niche-mosaic hypothesis of inlaid neutral modules in regional meta-communities. PMID:24045305

Removing forest canopy cover restores a reptile assemblage.

PubMed

Pike, David A; Webb, Jonathan K; Shine, Richard

2011-01-01

Humans are rapidly altering natural systems, leading to changes in the distribution and abundance of species. However, so many changes are occurring simultaneously (e.g., climate change, habitat fragmentation) that it is difficult to determine the cause of population fluctuations from correlational studies. We used a manipulative field experiment to determine whether forest canopy cover directly influences reptile assemblages on rock outcrops in southeastern Australia. Our experimental design consisted of three types of rock outcrops: (1) shady sites in which overgrown vegetation was manually removed (n = 25); (2) overgrown controls (n = 30); and (3) sun-exposed controls (n = 20). Following canopy removal, we monitored reptile responses over 30 months. Canopy removal increased reptile species richness, the proportion of shelter sites used by reptiles, and relative abundances of five species that prefer sun-exposed habitats. Our manipulation also decreased the abundances of two shade-tolerant species. Canopy cover thus directly influences this reptile assemblage, with the effects of canopy removal being dependent on each species' habitat preferences (i.e., selection or avoidance of sun-exposed habitat). Our study suggests that increases in canopy cover can cause declines of open-habitat specialists, as previously suggested by correlative studies from a wide range of taxa. Given that reptile colonization of manipulated outcrops occurred rapidly, artificially opening the canopy in ecologically informed ways could help to conserve imperiled species with patchy distributions and low vagility that are threatened by vegetation overgrowth. One such species is Australia's most endangered snake, the broadheaded snake (Hoplocephalus bungaroides).

Comparing vegetation types and anthropic disturbance levels in the Atlantic forest: how do Pentatomoidea (Hemiptera: Heteroptera) assemblages respond?

PubMed

Bianchi, F M; Mendonça, M S; Campos, L A

2014-12-01

The Atlantic Forest (AF) is considered the most fragmented and endangered Brazilian biome. The diversity of phytophagous insects increases after disturbances in forests, and it was hypothesized the Pentatomidae can furnish ecologically reliable information in terms of diversity in response to the changes occurring in AF. Our aim was to quantify the response of assemblages of Pentatomoidea to gradient of human disturbance in two vegetation types of the AF-dense ombrophilous forest (DOF) and mixed ombrophilous forest (MOF). Twelve transects were grouped into environmental classes, namely open, intermediate, and closed. Overall, 1,017 pentatomoids were sampled, representing 64 species. The open environment was more abundant than closed environment, though it is expected that Pentatomoidea respond with increasing abundance when under light or moderate disturbance. The MOF was more abundant than DOF, and the composition differed between both of them. Given the differences in composition between MOF and DOF, abiotic variables are important factors acting as environmental filters for Pentatomoidea, not just directly on the insects, but probably also on the nutritional support of their host plants.

Ichthyofauna of two streams (silted and reference) in the Upper Paraná river basin, Southeastern Brazil.

PubMed

Casatti, L

2004-11-01

In this study the fish assemblages of the silted Aguas Claras stream (AC) was compared with that of a reference, the São Carlos stream (SC), so as to identify potential fish indicators of integrity or degradation. Both streams, located about 5 km from one another, are part of the Upper Paraná river basin, Brazil, and present similar physiographical features. Twenty-one species were collected in AC (1,271 specimens) and 18 in SC (940 specimens). In AC, dominant species e.g., Corydoras aeneus (sandy pools), Serrapinnus notomelas, and Pyrrhulina australis (warm marginal shallow pools) were those favored by new microhabitats linked to siltation and removal of the riparian vegetation. Changes in the composition of the marginal vegetation resulted in dominance of species such as Hisonotus francirochai (marginal grasses). In SC the dominant species was Phalloceros caudimacultus, abundant in marginal shallow pools, and Trichomycterus diabolus. and Hypostomus nigromaculatus, exclusively riffle-dwelling species, which were absent in AC. Fish assemblage monitoring is recommended for use in riparian management programs in order to evaluate negative instream sedimentation effects.

Pollen from accurately dated speleothems supports alpine glacier low-stands during the early Holocene

NASA Astrophysics Data System (ADS)

Festi, Daniela; Hoffmann, Dirk L.; Luetscher, Marc

2016-07-01

Deciphering pollen assemblages from alpine speleothems holds potential to provide unique information about past vegetation in rapidly changing environments. Here, we reconstruct subsurface aerosol transport at Milchbach cave (Switzerland, 1840 m asl) based on the pollen content of two Holocene stalagmites. We demonstrate that pollen is chiefly associated with bacterially mediated calcite fabrics, typical of a well-ventilated cave system. In contrast, pollen is absent from columnar calcite fabrics confirming that hydrological transport is not a significant process for the incorporation of pollen into speleothems at Milchbach cave. Our results support significant changes in the subsurface ventilation regime, which can be associated with the waxing and waning of Upper Grindelwald glacier. Pollen assemblages obtained from six carbonate sub-samples attest the presence of a mixed deciduous forest in the Grindelwald valley during the early and middle Holocene, in agreement with coeval regional pollen records. This study demonstrates that even small amounts of calcite (0.3-2.8 cm3) are capable of delivering pollen spectra representative of the original vegetation if sufficiently elevated deposition fluxes are provided.

Incised channel fills containing conifers indicate that seasonally dry vegetation dominated Pennsylvanian tropical lowlands

USGS Publications Warehouse

Falcon-Lang, H. J.; Nelson, W.J.; Elrick, S.; Looy, C.V.; Ames, P.R.; DiMichele, W.A.

2009-01-01

The idea that the Pennsylvanian tropical lowlands were temporally dominated by rainforest (i.e., the Coal Forest) is deeply ingrained in the literature. Here we challenge two centuries of research by suggesting that this concept is based on a taphonomic artifact, and that seasonally dry vegetation dominated instead. This controversial finding arises from the discovery of a new middle Pennsylvanian (Moscovian) fossil plant assemblage in southeast Illinois, United States. The assemblage, which contains xerophytic walchian conifers, occurs in channels incised into a calcic Vertisol below the Baker Coal. These plants grew on seasonally dry tropical lowlands inferred to have developed during a glacial phase. This xerophytic flora differs markedly from that of the typical clubmoss-dominated Coal Forest developed during deglaciation events. Although preserved only very rarely, we argue that such xerophytic floras were temporally as dominant, and perhaps more dominant, than the iconic Coal Forests, which are overrepresented in the fossil record due to taphonomic megabias. These findings require the iconography of Pennsylvanian tropical lowlands to be redrawn. ?? 2009 Geological Society of America.

A predictive framework and review of the ecological impacts of exotic plant invasions on reptiles and amphibians.

PubMed

Martin, Leigh J; Murray, Brad R

2011-05-01

The invasive spread of exotic plants in native vegetation can pose serious threats to native faunal assemblages. This is of particular concern for reptiles and amphibians because they form a significant component of the world's vertebrate fauna, play a pivotal role in ecosystem functioning and are often neglected in biodiversity research. A framework to predict how exotic plant invasion will affect reptile and amphibian assemblages is imperative for conservation, management and the identification of research priorities. Here, we present a new predictive framework that integrates three mechanistic models. These models are based on exotic plant invasion altering: (1) habitat structure; (2) herbivory and predator-prey interactions; (3) the reproductive success of reptile and amphibian species and assemblages. We present a series of testable predictions from these models that arise from the interplay over time among three exotic plant traits (growth form, area of coverage, taxonomic distinctiveness) and six traits of reptiles and amphibians (body size, lifespan, home range size, habitat specialisation, diet, reproductive strategy). A literature review provided robust empirical evidence of exotic plant impacts on reptiles and amphibians from each of the three model mechanisms. Evidence relating to the role of body size and diet was less clear-cut, indicating the need for further research. The literature provided limited empirical support for many of the other model predictions. This was not, however, because findings contradicted our model predictions but because research in this area is sparse. In particular, the small number of studies specifically examining the effects of exotic plants on amphibians highlights the pressing need for quantitative research in this area. There is enormous scope for detailed empirical investigation of interactions between exotic plants and reptile and amphibian species and assemblages. The framework presented here and further testing of predictions will provide a basis for informing and prioritising environmental management and exotic plant control efforts. © 2010 The Authors. Biological Reviews © 2010 Cambridge Philosophical Society.

Prey-driven control of predator assemblages: zooplankton abundance drives aquatic beetle colonization.

PubMed

Pintar, Matthew R; Resetarits, William J

2017-08-01

Trophic interactions are critical determinants of community structure and ecosystem function. In freshwater habitats, top predators are traditionally viewed as drivers of ecosystem structure, shaping populations of consumers and primary producers. The temporary nature of small water bodies makes them dependent on colonization by many organisms, particularly insects that form highly diverse predator assemblages. We conducted mesocosm experiments with naturally colonizing populations of aquatic beetles to assess how prey (zooplankton) abundances influenced colonization and assemblages of natural populations of aquatic beetles. We experimentally demonstrate that zooplankton populations can be proximate regulators of predator populations and assemblages via prey-density-dependent predator recruitment. Our results provide support for the importance of prey populations in structuring predator populations and the role of habitat selection in structuring communities. We indicate that traditional views of predators as drivers of ecosystem structure in many systems may not provide a comprehensive picture, particularly in the context of highly disturbed or ephemeral habitats. © 2017 by the Ecological Society of America.

Airborne pollen assemblages and weather regime in the central-eastern Loess Plateau, China

NASA Astrophysics Data System (ADS)

Li, Yuecong; Ge, Yawen; Xu, Qinghai; Bunting, Jane M.; Lv, Suqing; Wang, Junting; Li, Zetao

2015-04-01

This paper presents the results of pollen trapping studies designed to quantify the pollen assemblages carried in the winds of the Loess Plateau in Luochuan and Hunyuan. The one-year-collection samples analysis results show that pollen assemblages can be more sensitive to the change of climate than the vegetation composition, because of the change of pollen production. The analysis results of pollen traps in different weather regimes indicate that the pollen influx coming from dust weather contribute more to the total pollen influx than that coming from non-dust weather. The wind speed is the most important influenced factor to pollen assemblages, then the mean temperature and the mean relative humidity, the wind direction also contributes some. Strong wind coming from dust direction can make the percent and influx of Artemisia and Chenopodiaceae increase obviously with averagely higher than over 2.7 times in dust weather than in non-dust samples. The influences of wind speed and wind direction are not serious to some arboreal pollen such as Rosaceae, Quercus, Betula, Pinus and Ostryopsis, which are mainly influenced by temperature or the relative humidity such as Salix, Hippophae, Carpinus, Brassicaceae, Cupressaceae, Fabaceae.

Aquatic assemblages of the highly urbanized Santa Ana River Basin, California

USGS Publications Warehouse

Brown, Larry R.; Burton, Carmen; Belitz, Kenneth

2005-01-01

We assessed the structure of periphyton, benthic macroinvertebrate, and fish assemblages and their associations with environmental variables at 17 sites on streams of the highly urbanized Santa Ana River basin in Southern California. All assemblages exhibited strong differences between highly urbanized sites in the valley and the least-impacted sites at the transition between the valley and undeveloped mountains. Results within the urbanized area differed among taxa. Periphyton assemblages were dominated by diatoms (>75% of total taxa). Periphyton assemblages within the urbanized area were not associated with any of the measured environmental variables, suggesting that structure of urban periphyton assemblages might be highly dependent on colonization dynamics. The number of Ephemeroptera, Trichoptera, and Plecoptera (EPT) taxa included in macroinvertebrate assemblages ranged from 0 to 6 at urbanized sites. Benthic macroinvertebrate assemblages had significant correlations with several environmental variables within the urban area, suggesting that stream size and permanence were important determinants of distribution among the species able to survive conditions in urban streams. Only 4 of 16 fish species collected were native to the drainage. Fish assemblages of urbanized sites included two native species, arroyo chub Gila orcuttii and Santa Ana sucker Catostomus santaanae, at sites that were intermediate in coefficient of variation of bank-full width, depth, bed substrate, and water temperature. Alien species dominated urbanized sites with lesser or greater values for these variables. These results suggest that urban streams can be structured to enhance populations of native fishes. Continued study of urban streams in the Santa Ana River basin and elsewhere will contribute to the basic understanding of ecological principles and help preserve the maximum ecological value of streams in highly urbanized areas.

[Degradation characteristics of swamps in Zoige Plateau induced by drainage based on quantitative classification of vegetation].

PubMed

Li, Ke; Yang, Yong-Xing; Yang, Yang; Han, Da-Yong

2012-07-01

Based on the field survey of swamp ecological characteristics and environmental quality and the ecological investigation of drained swamp transects in Zoige Plateau of Tibet in 2009, twenty typical swamp plots in the Plateau were classified into three types by TWINSPAN, i. e., primary swamp, long-term drained degraded swamp, and short-term drained degraded swamp, and each type of the degraded swamps was divided into three degradation grades, i. e., light degradation, moderate degradation, and severe degradation, with the degradation characteristics of vegetation and soil along the swamp degraded gradient studied. The swamp degradation in the Plateau was mainly driven by drainage pattern, drainage intensity, and soil moisture gradient, and the vegetation degradation was more obvious than the soil degradation. In the vegetation degradation, the structural change of hydro-type functional assemblage was most obvious, e. g., the importance value of helophytes under the stress of long-term drainage and short-term drainage decreased from 0.920 to 0.183 and 0.053, while that of mesophytes increased from 0.029 to 0.613 and 0.686, respectively. The soil response to the swamp degradation was in hysteresis, i. e., the soil physical and chemical properties presented definite variations but the differences were not significant among the swamps with different grades of degradation. The results of CCA indicated that soil moisture and nitrogen and potassium contents were the most important factors affecting the plant species distribution in drained degraded swamps in Zoige Plateau.

Expanding the global network of protected areas to save the imperiled mediterranean biome.

PubMed

Underwood, Emma C; Klausmeyer, Kirk R; Cox, Robin L; Busby, Sylvia M; Morrison, Scott A; Shaw, M Rebecca

2009-02-01

: Global goals established by the Convention on Biological Diversity stipulate that 10% of the world's ecological regions must be effectively conserved by 2010. To meet that goal for the mediterranean biome, at least 5% more land must be formally protected over the next few years. Although global assessments identify the mediterranean biome as a priority, without biologically meaningful analysis units, finer-resolution data, and corresponding prioritization analysis, future conservation investments could lead to more area being protected without increasing the representation of unique mediterranean ecosystems. We used standardized analysis units and six potential natural vegetation types stratified by 3 elevation zones in a global gap analysis that systematically explored conservation priorities across the mediterranean biome. The highest levels of protection were in Australia, South Africa, and California-Baja California (from 9-11%), and the lowest levels of protection were in Chile and the mediterranean Basin (<1%). Protection was skewed to montane elevations in three out of five regions. Across the biome only one of the six vegetation types--mediterranean shrubland--exceeded 10% protection. The remaining vegetation types--grassland, scrub, succulent dominated, woodland, and forest--each had <3% protection. To guard against biases in future protection efforts and ensure the protection of species characteristic of the mediterranean biome, we identified biodiversity assemblages with <10% protection and subject to >30% conversion and suggest that these assemblages be elevated to high-priority status in future conservation efforts.

Mass coral bleaching causes biotic homogenization of reef fish assemblages.

PubMed

Richardson, Laura E; Graham, Nicholas A J; Pratchett, Morgan S; Eurich, Jacob G; Hoey, Andrew S

2018-04-06

Global climate change is altering community composition across many ecosystems due to nonrandom species turnover, typically characterized by the loss of specialist species and increasing similarity of biological communities across spatial scales. As anthropogenic disturbances continue to alter species composition globally, there is a growing need to identify how species responses influence the establishment of distinct assemblages, such that management actions may be appropriately assigned. Here, we use trait-based analyses to compare temporal changes in five complementary indices of reef fish assemblage structure among six taxonomically distinct coral reef habitats exposed to a system-wide thermal stress event. Our results revealed increased taxonomic and functional similarity of previously distinct reef fish assemblages following mass coral bleaching, with changes characterized by subtle, but significant, shifts toward predominance of small-bodied, algal-farming habitat generalists. Furthermore, while the taxonomic or functional richness of fish assemblages did not change across all habitats, an increase in functional originality indicated an overall loss of functional redundancy. We also found that prebleaching coral composition better predicted changes in fish assemblage structure than the magnitude of coral loss. These results emphasize how measures of alpha diversity can mask important changes in the structure and functioning of ecosystems as assemblages reorganize. Our findings also highlight the role of coral species composition in structuring communities and influencing the diversity of responses of reef fishes to disturbance. As new coral species configurations emerge, their desirability will hinge upon the composition of associated species and their capacity to maintain key ecological processes in spite of ongoing disturbances. © 2018 John Wiley & Sons Ltd.

Urban habitat complexity affects species richness but not environmental filtering of morphologically-diverse ants

PubMed Central

Nash, Michael A.; Christie, Fiona J.; Hahs, Amy K.; Livesley, Stephen J.

2015-01-01

Habitat complexity is a major determinant of structure and diversity of ant assemblages. Following the size-grain hypothesis, smaller ant species are likely to be advantaged in more complex habitats compared to larger species. Habitat complexity can act as an environmental filter based on species size and morphological traits, therefore affecting the overall structure and diversity of ant assemblages. In natural and semi-natural ecosystems, habitat complexity is principally regulated by ecological successions or disturbance such as fire and grazing. Urban ecosystems provide an opportunity to test relationships between habitat, ant assemblage structure and ant traits using novel combinations of habitat complexity generated and sustained by human management. We sampled ant assemblages in low-complexity and high-complexity parks, and high-complexity woodland remnants, hypothesizing that (i) ant abundance and species richness would be higher in high-complexity urban habitats, (ii) ant assemblages would differ between low- and high-complexity habitats and (iii) ants living in high-complexity habitats would be smaller than those living in low-complexity habitats. Contrary to our hypothesis, ant species richness was higher in low-complexity habitats compared to high-complexity habitats. Overall, ant assemblages were significantly different among the habitat complexity types investigated, although ant size and morphology remained the same. Habitat complexity appears to affect the structure of ant assemblages in urban ecosystems as previously observed in natural and semi-natural ecosystems. However, the habitat complexity filter does not seem to be linked to ant morphological traits related to body size. PMID:26528416

Ichthyoplankton assemblages of coastal west-central Lake Erie and associated habitat characteristics

USGS Publications Warehouse

McKenna, J.E.; Hunter, R. Douglas; Fabrizio, M.C.; Savino, J.F.; Todd, T.N.; Bur, M.

2008-01-01

Early life stage survival often determines fish cohort strength and that survival is affected by habitat conditions. The structure and dynamics of ichthyoplankton assemblages can tell us much about biodiversity and fish population dynamics, but are poorly understood in nearshore areas of the Great Lakes, where most spawning and nursery habitats exist. Ichthyoplankton samples were collected with a neuston net in waters 2-13 m deep weekly or biweekly from mid-April through August, during 3 years (2000-2002) as part of a study of fish assemblages in west-central Lake Erie. A suite of abiotic variables was simultaneously measured to characterize habitat. Cluster and ordination analyses revealed several distinct ichthyoplankton assemblages that changed seasonally. A lake whitefish (Coregonus clupeaformis) dominated assemblage appeared first in April. In May, assemblages were dominated by several percid species. Summer assemblages were overwhelmingly dominated by emerald shiner (Notropis atherinoides), with large gizzard shad (Dorosoma cepedianum) and alewife (Alosa pseudoharengus) components. This seasonal trend in species assemblages was also associated with increasing temperature and water clarity. Water depth and drift processes may also play a role in structuring these assemblages. The most common and widely distributed assemblages were not associated with substratum type, which we characterized as either hard or soft. The timing of hatch and larval growth separated the major groups in time and may have adaptive significance for the members of each major assemblage. The quality and locations (with reference to lake circulation) of spawning and nursery grounds may determine larval success and affect year class strength.

Differences in coprophilous beetle communities structure in Sierra de Minas (Uruguay): a mosaic landscape.

PubMed

González-Vainer, Patricia; Morelli, E; Defeo, O

2012-10-01

Coprophilous beetles represent an abundant and rich group with critical importance in the functioning of terrestrial ecosystems. Most coprophagous beetles have a stenotopic distribution in relation to vegetation types. Because of this, they are usually very sensitive to environmental changes and are considered well suited as bioindicator organisms. The aim of this study was to analyze variations in coprophilous beetle assemblages in natural and anthropogenic habitats. Coprophilous beetle communities were sampled monthly for 1 year using pitfall traps baited with cow dung, in native xeric upland forests, 15-years-old plantations of Pinus elliottii and pastures in Sierra de Minas, Lavalleja, Uruguay. A total of 7,436 beetles were caught and identified to species or morphospecies level. The most abundant families were Aphodiidae, Scarabaeidae, and Staphylinidae. Differences in species richness, abundance, Shannon index, evenness, and dominance were detected between habitats. Abundances of most frequent families were significantly higher in both kinds of forests. Species richness and diversity of Aphodiidae and Staphylinidae were higher in forests, while Scarabaeidae showed the highest richness and diversity in pine plantations. Species composition significantly differed between habitats. Uroxys terminalis Waterhouse and Ataenius perforatus Harold typified the assemblages in native forests and pine plantations and also discriminated both communities because of their differential pattern of abundance between habitats. Typifying species in pastures were Onthophagus hirculus, Ateuchus robustus (Harold), and Ataenius platensis Blanchard. Habitat type had a strong effect on the coprophilous beetle community structure and composition.

A multi-scaled approach to evaluating the fish assemblage structure within southern Appalachian streams USA.

USGS Publications Warehouse

Kirsch, Joseph; Peterson, James T.

2014-01-01

There is considerable uncertainty about the relative roles of stream habitat and landscape characteristics in structuring stream-fish assemblages. We evaluated the relative importance of environmental characteristics on fish occupancy at the local and landscape scales within the upper Little Tennessee River basin of Georgia and North Carolina. Fishes were sampled using a quadrat sample design at 525 channel units within 48 study reaches during two consecutive years. We evaluated species–habitat relationships (local and landscape factors) by developing hierarchical, multispecies occupancy models. Modeling results suggested that fish occupancy within the Little Tennessee River basin was primarily influenced by stream topology and topography, urban land coverage, and channel unit types. Landscape scale factors (e.g., urban land coverage and elevation) largely controlled the fish assemblage structure at a stream-reach level, and local-scale factors (i.e., channel unit types) influenced fish distribution within stream reaches. Our study demonstrates the utility of a multi-scaled approach and the need to account for hierarchy and the interscale interactions of factors influencing assemblage structure prior to monitoring fish assemblages, developing biological management plans, or allocating management resources throughout a stream system.

Comparing efficacy of different taxonomic resolutions and surrogates in detecting changes in soft bottom assemblages due to coastal defence structures.

PubMed

Bertasi, Fabio; Colangelo, Marina Antonia; Colosio, Francesco; Gregorio, Gianni; Abbiati, Marco; Ceccherelli, Victor Ugo

2009-05-01

Sandy shores on the West coast of the North Adriatic Sea are extensively protected by different types of defence structures to prevent coastal erosion. Coastal defence schemes modify the hydrodynamic regime, the sediment structure and composition thus affecting the benthic assemblages. This study examines the effectiveness in detecting changes in soft bottom assemblages caused by coastal defence structures by using different levels of taxonomic resolution, polychaetes and/or bivalves as surrogates and different data transformations. A synoptic analyses of three datasets of subtidal benthic macrofauna used in studies aimed at assessing the impact of breakwaters along the North Adriatic coast has been done. Analyses of similarities and correlations between distance matrices were done using matrices with different levels of taxonomic resolution, and with polychaetes or bivalves data alone. Lentidium mediterraneum was the most abundant species in all datasets. Its abundance was not consistently related to the presence of defence structures. Moreover, distribution patterns of L. mediterraneum were masking the structure of the whole macrofaunal assemblages. Removal of L. mediterraneum from the datasets allowed the detection of changes in benthic assemblages due to coastal defences. Analyses on different levels of taxonomic resolution showed that the level of family maintained sufficient information to detect the impacts of coastal defence structures on benthic assemblages. Moreover, the outcomes depended on the transformation used. Patterns of distribution of bivalves, used as surrogates, showed low correlations with the patterns of the total macrofaunal species assemblages. Patterns of polychaetes, if identified to the species or genus level showed higher correlations with the whole dataset. However, the identification of polychaetes to species and genus level is as costly as the identification of all macrobenthic taxa at family level. This study provided additional evidences that taxonomic sufficiency is a useful tool in environmental monitoring, also in investigations on the impacts of coastal defence structures on subtidal macrofauna. The use of coarser taxonomic level, being time-efficient, would allow improving sampling designs of monitoring programs by increasing replication in space and time and by allowing long term monitoring studies.

Forgotten forests--issues and prospects in biome mapping using Seasonally Dry Tropical Forests as a case study.

PubMed

Särkinen, Tiina; Iganci, João R V; Linares-Palomino, Reynaldo; Simon, Marcelo F; Prado, Darién E

2011-11-24

South America is one of the most species diverse continents in the world. Within South America diversity is not distributed evenly at both local and continental scales and this has led to the recognition of various areas with unique species assemblages. Several schemes currently exist which divide the continental-level diversity into large species assemblages referred to as biomes. Here we review five currently available biome maps for South America, including the WWF Ecoregions, the Americas basemap, the Land Cover Map of South America, Morrone's Biogeographic regions of Latin America, and the Ecological Systems Map. The comparison is performed through a case study on the Seasonally Dry Tropical Forest (SDTF) biome using herbarium data of habitat specialist species. Current biome maps of South America perform poorly in depicting SDTF distribution. The poor performance of the maps can be attributed to two main factors: (1) poor spatial resolution, and (2) poor biome delimitation. Poor spatial resolution strongly limits the use of some of the maps in GIS applications, especially for areas with heterogeneous landscape such as the Andes. Whilst the Land Cover Map did not suffer from poor spatial resolution, it showed poor delimitation of biomes. The results highlight that delimiting structurally heterogeneous vegetation is difficult based on remote sensed data alone. A new refined working map of South American SDTF biome is proposed, derived using the Biome Distribution Modelling (BDM) approach where georeferenced herbarium data is used in conjunction with bioclimatic data. Georeferenced specimen data play potentially an important role in biome mapping. Our study shows that herbarium data could be used as a way of ground-truthing biome maps in silico. The results also illustrate that herbarium data can be used to model vegetation maps through predictive modelling. The BDM approach is a promising new method in biome mapping, and could be particularly useful for mapping poorly known, fragmented, or degraded vegetation. We wish to highlight that biome delimitation is not an exact science, and that transparency is needed on how biomes are used as study units in macroevolutionary and ecological research.

Forgotten forests - issues and prospects in biome mapping using Seasonally Dry Tropical Forests as a case study

PubMed Central

2011-01-01

Background South America is one of the most species diverse continents in the world. Within South America diversity is not distributed evenly at both local and continental scales and this has led to the recognition of various areas with unique species assemblages. Several schemes currently exist which divide the continental-level diversity into large species assemblages referred to as biomes. Here we review five currently available biome maps for South America, including the WWF Ecoregions, the Americas basemap, the Land Cover Map of South America, Morrone's Biogeographic regions of Latin America, and the Ecological Systems Map. The comparison is performed through a case study on the Seasonally Dry Tropical Forest (SDTF) biome using herbarium data of habitat specialist species. Results Current biome maps of South America perform poorly in depicting SDTF distribution. The poor performance of the maps can be attributed to two main factors: (1) poor spatial resolution, and (2) poor biome delimitation. Poor spatial resolution strongly limits the use of some of the maps in GIS applications, especially for areas with heterogeneous landscape such as the Andes. Whilst the Land Cover Map did not suffer from poor spatial resolution, it showed poor delimitation of biomes. The results highlight that delimiting structurally heterogeneous vegetation is difficult based on remote sensed data alone. A new refined working map of South American SDTF biome is proposed, derived using the Biome Distribution Modelling (BDM) approach where georeferenced herbarium data is used in conjunction with bioclimatic data. Conclusions Georeferenced specimen data play potentially an important role in biome mapping. Our study shows that herbarium data could be used as a way of ground-truthing biome maps in silico. The results also illustrate that herbarium data can be used to model vegetation maps through predictive modelling. The BDM approach is a promising new method in biome mapping, and could be particularly useful for mapping poorly known, fragmented, or degraded vegetation. We wish to highlight that biome delimitation is not an exact science, and that transparency is needed on how biomes are used as study units in macroevolutionary and ecological research. PMID:22115315

NATURAL AND HUMAN FACTORS STRUCTURING FISH ASSEMBLAGES IN WEST VIRGINIA WADEABLE STREAMS

EPA Science Inventory

We surveyed fishes and environmental variables in 119 stream basins to identify natural and anthropogenic factors structuring fish assemblages. We collected fishes and physico-chemical variables using standardized EPA methods and compiled basin characteristics (e.g., land cover)...

Identifying Shifts in Leaf-Litter Ant Assemblages (Hymenoptera: Formicidae) across Ecosystem Boundaries Using Multiple Sampling Methods

PubMed Central

Wiezik, Michal; Svitok, Marek; Wieziková, Adela; Dovčiak, Martin

2015-01-01

Global or regional environmental changes in climate or land use have been increasingly implied in shifts in boundaries (ecotones) between adjacent ecosystems such as beech or oak-dominated forests and forest-steppe ecotones that frequently co-occur near the southern range limits of deciduous forest biome in Europe. Yet, our ability to detect changes in biological communities across these ecosystems, or to understand their environmental drivers, can be hampered when different sampling methods are required to characterize biological communities of the adjacent but ecologically different ecosystems. Ants (Hymenoptera: Formicidae) have been shown to be particularly sensitive to changes in temperature and vegetation and they require different sampling methods in closed vs. open habitats. We compared ant assemblages of closed-forests (beech- or oak-dominated) and open forest-steppe habitats in southwestern Carpathians using methods for closed-forest (litter sifting) and open habitats (pitfall trapping), and developed an integrated sampling approach to characterize changes in ant assemblages across these adjacent ecosystems. Using both methods, we collected 5,328 individual ant workers from 28 species. Neither method represented ant communities completely, but pitfall trapping accounted for more species (24) than litter sifting (16). Although pitfall trapping characterized differences in species richness and composition among the ecosystems better, with beech forest being most species poor and ecotone most species rich, litter sifting was more successful in identifying characteristic litter-dwelling species in oak-dominated forest. The integrated sampling approach using both methods yielded more accurate characterization of species richness and composition, and particularly so in species-rich forest-steppe habitat where the combined sample identified significantly higher number of species compared to either of the two methods on their own. Thus, an integrated sampling approach should be used to fully characterize changes in ant assemblages across ecosystem boundaries, or with vegetation change over time, and particularly so in species-rich habitats such as forest-steppe ecotones. PMID:26226140

Identifying Shifts in Leaf-Litter Ant Assemblages (Hymenoptera: Formicidae) across Ecosystem Boundaries Using Multiple Sampling Methods.

PubMed

Wiezik, Michal; Svitok, Marek; Wieziková, Adela; Dovčiak, Martin

2015-01-01

Global or regional environmental changes in climate or land use have been increasingly implied in shifts in boundaries (ecotones) between adjacent ecosystems such as beech or oak-dominated forests and forest-steppe ecotones that frequently co-occur near the southern range limits of deciduous forest biome in Europe. Yet, our ability to detect changes in biological communities across these ecosystems, or to understand their environmental drivers, can be hampered when different sampling methods are required to characterize biological communities of the adjacent but ecologically different ecosystems. Ants (Hymenoptera: Formicidae) have been shown to be particularly sensitive to changes in temperature and vegetation and they require different sampling methods in closed vs. open habitats. We compared ant assemblages of closed-forests (beech- or oak-dominated) and open forest-steppe habitats in southwestern Carpathians using methods for closed-forest (litter sifting) and open habitats (pitfall trapping), and developed an integrated sampling approach to characterize changes in ant assemblages across these adjacent ecosystems. Using both methods, we collected 5,328 individual ant workers from 28 species. Neither method represented ant communities completely, but pitfall trapping accounted for more species (24) than litter sifting (16). Although pitfall trapping characterized differences in species richness and composition among the ecosystems better, with beech forest being most species poor and ecotone most species rich, litter sifting was more successful in identifying characteristic litter-dwelling species in oak-dominated forest. The integrated sampling approach using both methods yielded more accurate characterization of species richness and composition, and particularly so in species-rich forest-steppe habitat where the combined sample identified significantly higher number of species compared to either of the two methods on their own. Thus, an integrated sampling approach should be used to fully characterize changes in ant assemblages across ecosystem boundaries, or with vegetation change over time, and particularly so in species-rich habitats such as forest-steppe ecotones.

Translocation as a conservation tool for Agassiz's desert tortoises: Survivorship, reproduction, and movements

Treesearch

K. E. Nussear; C. R. Tracy; P. A. Medica; D. S. Wilson; R. W. Marlow; P. S. Corn

2012-01-01

We translocated 120 Agassiz's desert tortoises to 5 sites in Nevada and Utah to evaluate the effects of translocation on tortoise survivorship, reproduction, and habitat use. Translocation sites included several elevations, and extended to sites with vegetation assemblages not typically associated with desert tortoises in order to explore the possibility of moving...

Germination response of prairie dropseed and hairy goldaster to stratification and temperature

Treesearch

Aurora R. Roemmich; Jack L. Butler; Gary E. Larson; E. Brent Turnipseed

2012-01-01

The unique vegetation assemblage of the Black Hills in conjunction with the frequent occurrence of natural and anthropogenic disturbances emphasizes the need to use locally adapted native species in a wide variety of restoration efforts. However, a general lack of information regarding germination and propagation requirements for most native plant species has...

Wetland succession in a permafrost collapse: interations between fire and thermokarst

Treesearch

I.H. Myers-Smith; J.W. Harden; M. Wilmking; C.C. Fuller; A.D. McGuire; F.S. III Chapin

2008-01-01

To determine the influence of fire and thermokarst in a boreal landscape, we investigated peat cores within and adjacent to a permafrost collapse feature on the Tanana River Floodplain of Interior Alaska. Radioisotope dating, diatom assemblages, plant macrofossils, charcoal fragments, and carbon and nitrogen content of the peat profile indicate ~600 years of vegetation...

Colony geometry and structural complexity of the endangered species Acropora cervicornis partly explains the structure of their associated fish assemblage.

PubMed

Agudo-Adriani, Esteban A; Cappelletto, Jose; Cavada-Blanco, Francoise; Croquer, Aldo

2016-01-01

In the past decade, significant efforts have been made to describe fish-habitat associations. However, most studies have oversimplified actual connections between fish assemblages and their habitats by using univariate correlations. The purpose of this study was to identify the features of habitat forming corals that facilitate and influences assemblages of associated species such as fishes. For this we developed three-dimensional models of colonies of Acropora cervicornis to estimate geometry (length and height), structural complexity (i.e., volume, density of branches, etc.) and biological features of the colonies (i.e., live coral tissue, algae). We then correlated these colony characteristics with the associated fish assemblage using multivariate analyses. We found that geometry and complexity were better predictors of the structure of fish community, compared to other variables such as percentage of live coral tissue or algae. Combined, the geometry of each colony explained 40% of the variability of the fish assemblage structure associated with this coral species; 61% of the abundance and 69% of fish richness, respectively. Our study shows that three-dimensional reconstructions of discrete colonies of Acropora cervicornis provides a useful description of the colonial structural complexity and may explain a great deal of the variance in the structure of the associated coral reef fish community. This demonstration of the strongly trait-dependent ecosystem role of this threatened species has important implications for restoration and conservation efforts.

Colony geometry and structural complexity of the endangered species Acropora cervicornis partly explains the structure of their associated fish assemblage

PubMed Central

Cappelletto, Jose; Cavada-Blanco, Francoise; Croquer, Aldo

2016-01-01

In the past decade, significant efforts have been made to describe fish-habitat associations. However, most studies have oversimplified actual connections between fish assemblages and their habitats by using univariate correlations. The purpose of this study was to identify the features of habitat forming corals that facilitate and influences assemblages of associated species such as fishes. For this we developed three-dimensional models of colonies of Acropora cervicornis to estimate geometry (length and height), structural complexity (i.e., volume, density of branches, etc.) and biological features of the colonies (i.e., live coral tissue, algae). We then correlated these colony characteristics with the associated fish assemblage using multivariate analyses. We found that geometry and complexity were better predictors of the structure of fish community, compared to other variables such as percentage of live coral tissue or algae. Combined, the geometry of each colony explained 40% of the variability of the fish assemblage structure associated with this coral species; 61% of the abundance and 69% of fish richness, respectively. Our study shows that three-dimensional reconstructions of discrete colonies of Acropora cervicornis provides a useful description of the colonial structural complexity and may explain a great deal of the variance in the structure of the associated coral reef fish community. This demonstration of the strongly trait-dependent ecosystem role of this threatened species has important implications for restoration and conservation efforts. PMID:27069801

Places for Pedagogies, Pedagogies for Places

ERIC Educational Resources Information Center

Duhn, Iris

2012-01-01

Working with an understanding of assemblage as the ad hoc groupings of vibrant materials and elements, this article argues that conceptualizing place as an assemblage opens possibilities for bridging the gap between subjects and objects that continue to structure pedagogy. Considering "place" as an assemblage of humans and their multiple…

Simultaneous abrupt shifts in hydrology and fish assemblage structure in a floodplain lake in the central Amazon

PubMed Central

Röpke, Cristhiana P.; Amadio, Sidinéia; Zuanon, Jansen; Ferreira, Efrem J. G.; Deus, Cláudia Pereira de; Pires, Tiago H. S.; Winemiller, Kirk O.

2017-01-01

Combined effects of climate change and deforestation have altered precipitation patterns in the Amazon. This has led to changes in the frequency of extreme events of flood and drought in recent decades and in the magnitude of the annual flood pulse, a phenomenon that influences virtually all aspects of river-floodplain ecosystem dynamics. Analysis of long-term data revealed abrupt and synchronous changes in hydrology and fish assemblage structure of a floodplain lake near the confluence of Amazon and Negro rivers. After an intense drought in 2005, the assemblage assumed a different and fairly persistent taxonomic composition and functional structure. Declines in abundance after 2005 were more pronounced for species of all sizes having equilibrium life history strategy, large species with periodic life history strategy, and for all trophic levels except primary consumers. Our results suggest that the extreme drought triggered changes in the fish assemblage and subsequent anomalous hydrological conditions have hampered assemblage recovery. These findings stress the need to account for climatic-driven hydrological changes in conservation efforts addressing aquatic biodiversity and fishery resources in the central Amazon. PMID:28071701

Simultaneous abrupt shifts in hydrology and fish assemblage structure in a floodplain lake in the central Amazon.

PubMed

Röpke, Cristhiana P; Amadio, Sidinéia; Zuanon, Jansen; Ferreira, Efrem J G; Deus, Cláudia Pereira de; Pires, Tiago H S; Winemiller, Kirk O

2017-01-10

Combined effects of climate change and deforestation have altered precipitation patterns in the Amazon. This has led to changes in the frequency of extreme events of flood and drought in recent decades and in the magnitude of the annual flood pulse, a phenomenon that influences virtually all aspects of river-floodplain ecosystem dynamics. Analysis of long-term data revealed abrupt and synchronous changes in hydrology and fish assemblage structure of a floodplain lake near the confluence of Amazon and Negro rivers. After an intense drought in 2005, the assemblage assumed a different and fairly persistent taxonomic composition and functional structure. Declines in abundance after 2005 were more pronounced for species of all sizes having equilibrium life history strategy, large species with periodic life history strategy, and for all trophic levels except primary consumers. Our results suggest that the extreme drought triggered changes in the fish assemblage and subsequent anomalous hydrological conditions have hampered assemblage recovery. These findings stress the need to account for climatic-driven hydrological changes in conservation efforts addressing aquatic biodiversity and fishery resources in the central Amazon.

Climate mediates the effects of disturbance on ant assemblage structure

PubMed Central

Gibb, Heloise; Sanders, Nathan J.; Dunn, Robert R.; Watson, Simon; Photakis, Manoli; Abril, Silvia; Andersen, Alan N.; Angulo, Elena; Armbrecht, Inge; Arnan, Xavier; Baccaro, Fabricio B.; Bishop, Tom R.; Boulay, Raphael; Castracani, Cristina; Del Toro, Israel; Delsinne, Thibaut; Diaz, Mireia; Donoso, David A.; Enríquez, Martha L.; Fayle, Tom M.; Feener, Donald H.; Fitzpatrick, Matthew C.; Gómez, Crisanto; Grasso, Donato A.; Groc, Sarah; Heterick, Brian; Hoffmann, Benjamin D.; Lach, Lori; Lattke, John; Leponce, Maurice; Lessard, Jean-Philippe; Longino, John; Lucky, Andrea; Majer, Jonathan; Menke, Sean B.; Mezger, Dirk; Mori, Alessandra; Munyai, Thinandavha C.; Paknia, Omid; Pearce-Duvet, Jessica; Pfeiffer, Martin; Philpott, Stacy M.; de Souza, Jorge L. P.; Tista, Melanie; Vasconcelos, Heraldo L.; Vonshak, Merav; Parr, Catherine L.

2015-01-01

Many studies have focused on the impacts of climate change on biological assemblages, yet little is known about how climate interacts with other major anthropogenic influences on biodiversity, such as habitat disturbance. Using a unique global database of 1128 local ant assemblages, we examined whether climate mediates the effects of habitat disturbance on assemblage structure at a global scale. Species richness and evenness were associated positively with temperature, and negatively with disturbance. However, the interaction among temperature, precipitation and disturbance shaped species richness and evenness. The effect was manifested through a failure of species richness to increase substantially with temperature in transformed habitats at low precipitation. At low precipitation levels, evenness increased with temperature in undisturbed sites, peaked at medium temperatures in disturbed sites and remained low in transformed sites. In warmer climates with lower rainfall, the effects of increasing disturbance on species richness and evenness were akin to decreases in temperature of up to 9°C. Anthropogenic disturbance and ongoing climate change may interact in complicated ways to shape the structure of assemblages, with hot, arid environments likely to be at greatest risk. PMID:25994675

Ecological effects of soil properties and metal concentrations on the composition and diversity of microbial communities associated with land use patterns in an electronic waste recycling region.

PubMed

Wu, Wencheng; Dong, Changxun; Wu, Jiahui; Liu, Xiaowen; Wu, Yingxin; Chen, Xianbin; Yu, Shixiao

2017-12-01

Soil microbes play vital roles in ecosystem functions, and soil microbial communities may be strongly structured by land use patterns associated with electronic waste (e-waste) recycling activities, which can increase the heavy metal concentration in soils. In this study, a suite of soils from five land use types (paddy field, vegetable field, dry field, forest field, and e-waste recycling site) were collected in Longtang Town, Guangdong Province, South China. Soil physicochemical properties and heavy metal concentrations were measured, and the indigenous microbial assemblages were profiled using 16S rRNA high-throughput sequencing and clone library analyses. The results showed that mercury concentration was positively correlated with both Faith's PD and Chao1 estimates, suggesting that the soil microbial alpha diversity was predominantly regulated by mercury. In addition, redundancy analysis indicated that available phosphorus, soil moisture, and mercury were the three major drivers affecting the microbial assemblages. Overall, the microbial composition was determined primarily by land use patterns, and this study provides a novel insight on the composition and diversity of microbial communities in soils associated with e-waste recycling activities. Copyright © 2017 Elsevier B.V. All rights reserved.

Three decades of recurrent declines and recoveries in corals belie ongoing change in fish assemblages

NASA Astrophysics Data System (ADS)

Lamy, T.; Galzin, R.; Kulbicki, M.; Lison de Loma, T.; Claudet, J.

2016-03-01

Coral reefs are increasingly being altered by a myriad of anthropogenic activities and natural disturbances. Long-term studies offer unique opportunities to understand how multiple and recurrent disturbances can influence coral reef resilience and long-term dynamics. While the long-term dynamics of coral assemblages have been extensively documented, the long-term dynamics of coral reef fish assemblages have received less attention. Here, we describe the changes in fish assemblages on Tiahura reef, Moorea, from 1979 to 2011. During this 33-yr period, Tiahura was exposed to multiple disturbances (crown-of-thorns seastar outbreaks and cyclones) that caused recurrent declines and recoveries of coral cover and changes in the dominant coral genera. These shifts in coral composition were associated with long-term cascading effects on fish assemblages. The composition and trophic structure of fish assemblages continuously shifted without returning to their initial composition, whereas fish species richness remained stable, albeit with a small increase over time. We detected nonlinear responses of fish density when corals were most degraded. When coral cover dropped below 10 % following a severe crown-of-thorns sea star outbreak, the density of most fish trophic groups sharply decreased. Our study shows that historical contingency may potentially be an important but largely underestimated factor explaining the contemporary structure of reef fish assemblages and suggests that temporal stability in their structure and function should not necessarily be the target of management strategies that aim at increasing or maintaining coral reef resilience.

Oyster reef restoration in the Northern Gulf of Mexico: effect of artificial substrate and sge on nekton and benthic macroinvertebrate assemblage use

USGS Publications Warehouse

Brown, Laura A.; Furlong, Jessica N.; Brown, Kenneth M.; LaPeyre, Megan K.

2013-01-01

In the northern Gulf of Mexico (GOM), reefs built by eastern oysters, Crassostrea virginica, provide critical habitat within shallow estuaries, and recent efforts have focused on restoring reefs to benefit nekton and benthic macroinvertebrates. We compared nekton and benthic macroinvertebrate assemblages at historic, newly created (<5years) and old (>6years) shell and rock substrate reefs. Using crab traps, gill-nets, otter trawls, cast nets, and benthic macroinvertebrate collectors, 20 shallow reefs (<5m) in the northern GOM were sampled throughout the summer of 2011. We compared nekton and benthic assemblage abundance, diversity and composition across reef types. Except for benthic macroinvertebrate abundance, which was significantly higher on old rock reefs as compared to historic reefs, all reefs were similar to historic reefs, suggesting created reefs provide similar support of nekton and benthic assemblages as historic reefs. To determine refuge value of oyster structure for benthic macroinvertebrates compared to bare bottom, we tested preferences of juvenile crabs across depth and refuge complexity in the presence and absence of adult blue crabs (Callinectes sapidus). Juveniles were more likely to use deep water with predators present only when provided oyster structure. Provision of structural material to support and sustain development of benthic and mobile reef communities may be the most important factor in determining reef value to these assemblages, with biophysical characteristics related to reef location influencing assemblage patterns in areas with structure; if so, appropriately locating created reefs is critical.

Structural impoverishment of the subtidal vegetation of southeastern Bay of Biscay from 1991 to 2013 in the context of climate change

NASA Astrophysics Data System (ADS)

Muguerza, N.; Díez, I.; Quintano, E.; Bustamante, M.; Gorostiaga, J. M.

2017-12-01

This study assesses changes in the taxonomic and functional structure and in the diversity of the shallow (3-9 m) subtidal vegetation off the southeastern coast of the Bay of Biscay by studying 19 locations between 1991 and 2013. Results provide evidence that the three-dimensional assemblages of shallow subtidal bottoms in the study area may be shifting towards less structurally complex communities. Canopy-forming algae are declining whereas simple thallus turfs composed of a combination of filamentous, polysiphonated and foliose non-corticated algae are becoming abundant along with articulated corallines and crustose species. Moreover, a significant increase in taxa richness and diversity was found, mainly due to the development of opportunistic and morphologically simple forms with warm-water affinity. The potential ecological consequences of canopy loss for coastal ecosystems are discussed. Given that changes in climate conditions are predicted to intensify, the prevalence of the new turfing space occupiers in the study area here considered seems to be realistic on the basis of their ability to compete for space and resist disturbance. Consequently, major implications for the functioning and diversity of the ecosystem and for ecosystem services may be expected. bJ. rubens and J. Longifurca. cM. alternans and M. expansum. dP. harveyana and P. squamaria. eP. cartilagineum and P. raphelisianum. fP. ardreana, P. parasitica and P. pennata. gU. dangeardii, U. pseudocurvata and U. rigida.

Impact of Holocene terrestrial vegetation succession on the biogeochemical structure and function of an Arctic lake, Alaska

NASA Astrophysics Data System (ADS)

Langdon, P. G.; Whiteford, E.; Hopla, E.; van Hardenbroek, M.; Turner, S.; Edwards, M. E.; Jones, V.; McGowan, S.; Wiik, E.; Anderson, N. J.

2016-12-01

Vegetation changes are occurring in the Arctic as warming progresses, a process often referred to as "greening". The northward expansion of woody shrubs influence nutrient cycling in soils, including carbon (C) cycling, but the extent to which they will change the storage or release of carbon at a landscape scale is uncertain. The role that lakes play in this system is not fully understood, but it is known that many lakes in the tundra and northern forests are today releasing carbon dioxide (and methane) into the atmosphere in significant amounts, and a proportion of this carbon comes into the lake from the vegetation and soils of the surrounding landscape. Furthermore, the number of lakes contributing to this gas release has been hitherto underestimated, and it is thus likely that lakes play a far greater role in terms of total gas emissions. In order to assess the relationships between vegetation succession and lake biogeochemical cycling we have studied palaeoenvironmental change in a suite of lakes across the Arctic in a NERC funded project LAC (Lakes and the Arctic Carbon Cycle). This abstract is focused on a full Holocene sequence from an Alaskan Lake (Woody Bottom Pond), with palaeo records of major elements (scanning XRF), diatoms, pollen, stable isotopes and pigments. The small size of the catchment likely leads to strong coupling between catchment processes such as vegetation succession and fire and aquatic biogeochemical responses. For example the arrival of alder is followed by marked shift in diatom assemblage and pigments associated with changes in N cycling. This approach allows us to assess how catchment change affects aquatic ecosystems and the resultant balance between heterotrophy and autotrophy in arctic lakes over long timescales.

Environmental constraints on the compositional and phylogenetic beta-diversity of tropical forest snake assemblages.

PubMed

Moura, Mario R; Costa, Henrique C; Argôlo, Antônio J S; Jetz, Walter

2017-09-01

The ongoing biodiversity crisis increases the importance and urgency of studies addressing the role of environmental variation on the composition and evolutionary history of species assemblages, but especially the tropics and ectotherms remain understudied. In regions with rainy summers, coexistence of tropical ectothermic species may be determined by the partitioning of the climatic niche, as ectotherms can rely on water availability and thermoregulatory behaviour to buffer constraints along their climatic niche. Conversely, tropical ectotherms facing dry summers would have fewer opportunities to climatic niche partitioning and other processes rather than environmental filtering would mediate species coexistence. We used 218 snake assemblages to quantify the compositional (CBD) and phylogenetic (PBD) beta-diversity of snakes in the Atlantic Forest (AF) hotspot, South America. We identify two AF regions with distinct climatological regimes: dry summers in the northern-AF and rainy summers in the southern-AF. While accounting for the influence of multiscale spatial processes, we disentangle the relative contribution of thermal, water-related and topographic conditions in structuring the CBD and PBD of snake assemblages, and determine the extent in which snake assemblages under distinct climatological regimes are affected by environmental filtering. Thermal conditions best explain CBD and PBD of snakes for the whole AF, whereas water-related factors best explain the structure of snake assemblages within a same climatological regime. CBD and PBD patterns are similarly explained by spatial factors but snake assemblages facing dry summers are more affected by spatial processes operating at fine to intermediate spatial scale, whereas those assemblages in regions with rainy summers have a stronger signature of coarse-scale processes. As expected, environmental filtering plays a stronger role in southern-AF than northern-AF, and the synergism between thermal and water-related conditions is the key cause behind this difference. Differences in climatological regimes within the tropics affect processes mediating species coexistence. The influence of broad-scale gradients (e.g. temperature and precipitation) in structuring tropical ectothermic assemblages is greater in regions with rainy summers where climatic niche partitioning is more likely. Our findings highlight the potential stronger role of biotic interactions and neutral processes in structuring ectothermic assemblages facing changes towards warmer and dryer climates. © 2017 The Authors. Journal of Animal Ecology © 2017 British Ecological Society.

Juvenile bottlenecks and salinity shape grey mullet assemblages in Mediterranean estuaries

NASA Astrophysics Data System (ADS)

Cardona, Luis; Hereu, Bernat; Torras, Xavier

2008-05-01

Previous research has suggested that competitive bottlenecks may exist for the Mediterranean grey mullets (Osteichthyes, Mugilidae) at the fry stage with the exotic Cyprinus carpio (Osteichthyes, Cyprinidae) playing a central role. As a consequence, the structure of grey mullet assemblages at later stages is thought to reflect previous competition as well as differences in osmoregulatory skills. This paper tests that hypothesis by examining four predictions about the relative abundance of five grey mullet species in 42 Western Mediterranean estuary sites from three areas (Aiguamolls de l'Empordà, Ebro Delta and Minorca) differing in the salinity level and occurrence of C. carpio. Field data confirmed the predictions as: (1) Liza aurata and Mugil cephalus were scarce everywhere and never dominated the assemblage; (2) Liza saliens dominated the assemblage where the salinity level was higher than 13; (3) Liza ramado always dominated the assemblage where the salinity level was lower than 13 and C. carpio was present; and (4) Chelon labrosus dominated the assemblage only where the salinity level was lower than 13 and C. carpio was absent. The catch per unit effort of C. labrosus of any size was smaller in the presence of C. carpio than where it had not been introduced, which is in agreement with the juvenile competitive bottleneck hypothesis. Discriminant analysis confirmed that the assemblage structure was linked to the salinity level and the occurrence of C. carpio for both early juveniles and late juveniles as well as adults. The data reported here reveal that the structure of grey mullet assemblages inhabiting Mediterranean estuaries is determined by salinity and competitive interactions at the fry stage.

Recognizing the Palynological Signal of Heinrich Event H1

NASA Astrophysics Data System (ADS)

Delusina, I.

2017-12-01

One of the most challenging intervals for paleo-vegetation reconstruction of the post-Glacial environment is the transition that occurred at the beginning and the end of Heinrich event H1 and that stretched up to the beginning of the Younger Dryas. The main ambiguity is related to the magnitude and timing of H1 and the non-linear response of the Earth system to the Heinrich event itself in different geographical locations. We consider the H1 event as the entire transition interval since 18 to 14.5 Kya. The main problem that arises is the uncertainty in the interpretation of the pollen assemblages due to their mixed nature, particularly the presence of both "warm" and "cold" pollen. We have compared the pollen signal from the beginning to the end of the H1 event along a tropic to subpolar transect, using data from our own studies and the published literature. We find that despite regional peculiarities, most of the pollen assemblages demonstrate a similar sequence of patterns. One of the most prominent common features, seen at the beginning and the end of H1, is the appearance of saw-tooth like shapes in the variables of the pollen diagram, independent of location, vegetation composition and other factors. The most noticeable "saw-tooth" occurs after H1, between about 14 and 12 Kya, the interval that roughly corresponds to the Bølling/Allerød. The common features of a "saw-tooth" for both the beginning and the end of the H1 event, appear in this order: 1) increase in ferns, usually coinciding with or followed by an increased percentage of conifer pollen. 2) The beginning of dominance of xerophyte assemblages, again as a "saw-tooth" which lasts for about 2 Kya. 3) Each "saw-tooth", no matter where it occurs, terminates with the beginning of an increase in arboreal (or steppe) vegetation. For all of the different sites, the isotopic evidence is that this was a period of warming, but the pollen records tell a more complex story. Despite the local individualities of each pollen record, they all indicate that the response to global warming was not monotonic but resulted in rapid, almost chaotic changes in vegetation, until ultimately terminated with the Younger Dryas cooling.

Biological assessment of environmental flows for Oklahoma

USGS Publications Warehouse

Fisher, William L.; Seilheimer, Titus S.; Taylor, Jason M.

2012-01-01

Large-scale patterns in fish assemblage structure and functional groups are influenced by alterations in streamflow regime. In this study, we defined an objective threshold for alteration for Oklahoma streams using a combination of the expected range of 27 flow indices and a discriminant analysis to predict flow regime group. We found that fish functional groups in reference flow conditions had species that were more intolerant to flow alterations and preferences for stream habitat and faster flowing water. In contrast, altered sites had more tolerant species that preferred lentic habitat and slower water velocity. Ordination graphs of the presence and functional groups of species revealed an underlying geographical pattern roughly conforming to ecoregions, although there was separation between reference and altered sites within the larger geographical framework. Additionally, we found that reservoir construction and operation significantly altered fish assemblages in two different systems, Bird Creek in central Oklahoma and the Kiamichi River in southeastern Oklahoma. The Bird Creek flow regime shifted from a historically intermittent stream to one with stable perennial flows, and changes in fish assemblage structure covaried with changes in all five components of the flow regime. In contrast, the Kiamichi River flow regime did not change significantly for most flow components despite shifts in fish assemblage structure; however, most of the species associated with shifts in assemblage structure in the Kiamichi River system were characteristic of lentic environments and were likely related more to proximity of reservoirs in the drainage system than changes in flow. The spatial patterns in fish assemblage response to flow alteration, combined with different temporal responses of hydrology and fish assemblage structure at sites downstream of reservoirs, indicate that interactions between flow regime and aquatic biota vary depending on ecological setting. This supports the notion that regional variation in natural flow regimes could affect the development of flow recommendations.

Different key roles of mesoscale oceanographic structures and ocean bathymetry in shaping larval fish distribution pattern: A case study in Sicilian waters in summer 2009

NASA Astrophysics Data System (ADS)

Cuttitta, Angela; Quinci, Enza Maria; Patti, Bernardo; Bonomo, Sergio; Bonanno, Angelo; Musco, Marianna; Torri, Marco; Placenti, Francesco; Basilone, Gualtiero; Genovese, Simona; Armeri, Grazia Maria; Spanò, Antonina; Arculeo, Marco; Mazzola, Antonio; Mazzola, Salvatore

2016-09-01

Fish larvae data collected in year 2009 were used to examine the effects of particular environmental conditions on the structure of larval assemblages in two oligotrophic Mediterranean areas (the Southern Tyrrhenian Sea and the Strait of Sicily). For this purpose, relationships with environmental variables (temperature, salinity and fluorescence), zooplankton biomass, water circulation and bathymetry are discussed. Hydrodynamic conditions resulted very differently between two study areas. The Southern Tyrrhenian Sea was characterized by moderate shallow circulation compared to the Strait of Sicily. In this framework, distribution pattern of larval density in the Tyrrhenian Sea was mainly driven by bathymetry, due to spawning behavior of adult fish. There, results defined four assemblages: two coastal assemblages dominated by pelagic and demersal families and two oceanic assemblages dominated by mesopelagic species more abundant in western offshore and less abundant in eastern offshore. The assemblage variations in the western side was related to the presence of an anti-cyclonic gyre in the northern side of the Gulf of Palermo, while in the eastern side the effect of circulation was not very strong and the environmental conditions rather than the dispersal of species determined the larval fish communities structure. Otherwise in the Strait of Sicily the currents were the main factor governing the concentration and the assemblage structure. In fact, the distribution of larvae was largely consistent with the branch of the Atlantic Ionian Stream (AIS). Moreover, very complex oceanographic structures (two cyclonic circulations in the western part of the study area and one anti-cyclonic circulation in the eastern part) caused the formation of uncommon spatial distribution of larval fish assemblages, only partially linked to bathymetry of the study area. Typically coastal larvae (pelagic families: Engraulidae and Clupeidae) were mostly concentrated in the offshore areas and off Capo Passero, where the presence of a thermo-haline front maintained their position in an area with favourable conditions for larval fish feeding and growth.

Dissecting the multi-scale spatial relationship of earthworm assemblages with soil environmental variability.

PubMed

Jiménez, Juan J; Decaëns, Thibaud; Lavelle, Patrick; Rossi, Jean-Pierre

2014-12-05

Studying the drivers and determinants of species, population and community spatial patterns is central to ecology. The observed structure of community assemblages is the result of deterministic abiotic (environmental constraints) and biotic factors (positive and negative species interactions), as well as stochastic colonization events (historical contingency). We analyzed the role of multi-scale spatial component of soil environmental variability in structuring earthworm assemblages in a gallery forest from the Colombian "Llanos". We aimed to disentangle the spatial scales at which species assemblages are structured and determine whether these scales matched those expressed by soil environmental variables. We also tested the hypothesis of the "single tree effect" by exploring the spatial relationships between root-related variables and soil nutrient and physical variables in structuring earthworm assemblages. Multivariate ordination techniques and spatially explicit tools were used, namely cross-correlograms, Principal Coordinates of Neighbor Matrices (PCNM) and variation partitioning analyses. The relationship between the spatial organization of earthworm assemblages and soil environmental parameters revealed explicitly multi-scale responses. The soil environmental variables that explained nested population structures across the multi-spatial scale gradient differed for earthworms and assemblages at the very-fine- (<10 m) to medium-scale (10-20 m). The root traits were correlated with areas of high soil nutrient contents at a depth of 0-5 cm. Information on the scales of PCNM variables was obtained using variogram modeling. Based on the size of the plot, the PCNM variables were arbitrarily allocated to medium (>30 m), fine (10-20 m) and very fine scales (<10 m). Variation partitioning analysis revealed that the soil environmental variability explained from less than 1% to as much as 48% of the observed earthworm spatial variation. A large proportion of the spatial variation did not depend on the soil environmental variability for certain species. This finding could indicate the influence of contagious biotic interactions, stochastic factors, or unmeasured relevant soil environmental variables.

Altered mangrove wetlands as habitat for estuarine nekton: are dredged channels and tidal creeks equivalent?

USGS Publications Warehouse

Krebs, Justin M.; Brame, Adam B.; McIvor, Carole C.

2007-01-01

Hasty decisions are often made regarding the restoration of "altered" habitats, when in fact the ecological value of these habitats may be comparable to natural ones. To assess the "value" of altered mangrove-lined habitats for nekton, we sampled for 1 yr within three Tampa Bay wetlands. Species composition, abundance, and spatial distribution of nekton assemblages in permanent subtidal portions of natural tidal creeks and wetlands altered by construction of mosquito-control ditches and stormwater-drainage ditches were quantified through seasonal seine sampling. Results of repeated-measures analysis of variance and ordination of nekton community data suggested differences in species composition and abundance between natural and altered habitat, though not consistently among the three wetlands. In many cases, mosquito ditches were more similar in assemblage structure to tidal creeks than to stormwater ditches. In general, mosquito ditches and stormwater ditches were the most dissimilar in terms of nekton community structure. These dissimilarities were likely due to differences in design between the two types of ditches. Mosquito ditches tend to fill in over time and are thus more ephemeral features in the landscape. In contrast, stormwater ditches are a more permanent altered habitat that remain open due to periodic flushing from heavy runoff. Results indicate that environmental conditions (e.g., salinity, current velocity, vegetative structure) may provide a more useful indication of potential habitat "value" for nekton than whether the habitat has been altered. The type of ditching is therefore more important than ditching per se when judging the habitat quality of these altered channels for fishes, shrimps and crabs. Planning should entail careful consideration of environmental conditions rather than simply restoring for restoration's sake.

Glacial legacies on interglacial vegetation at the Pliocene-Pleistocene transition in NE Asia

PubMed Central

Herzschuh, Ulrike; Birks, H. John B.; Laepple, Thomas; Andreev, Andrei; Melles, Martin; Brigham-Grette, Julie

2016-01-01

Broad-scale climate control of vegetation is widely assumed. Vegetation-climate lags are generally thought to have lasted no more than a few centuries. Here our palaeoecological study challenges this concept over glacial–interglacial timescales. Through multivariate analyses of pollen assemblages from Lake El'gygytgyn, Russian Far East and other data we show that interglacial vegetation during the Plio-Pleistocene transition mainly reflects conditions of the preceding glacial instead of contemporary interglacial climate. Vegetation–climate disequilibrium may persist for several millennia, related to the combined effects of permafrost persistence, distant glacial refugia and fire. In contrast, no effects from the preceding interglacial on glacial vegetation are detected. We propose that disequilibrium was stronger during the Plio-Pleistocene transition than during the Mid-Pliocene Warm Period when, in addition to climate, herbivory was important. By analogy to the past, we suggest today's widespread larch ecosystem on permafrost is not in climate equilibrium. Vegetation-based reconstructions of interglacial climates used to assess atmospheric CO2–temperature relationships may thus yield misleading simulations of past global climate sensitivity. PMID:27338025

How do beetle assemblages respond to cyclonic disturbance of a fragmented tropical rainforest landscape?

PubMed

Grimbacher, Peter S; Stork, Nigel E

2009-09-01

There are surprisingly few studies documenting effects of tropical cyclones (including hurricanes and typhoons) on rainforest animals, and especially insects, considering that many tropical forests are frequently affected by cyclonic disturbance. Consequently, we sampled a beetle assemblage inhabiting 18 upland rainforest sites in a fragmented landscape in north-eastern Queensland, Australia, using a standardised sampling protocol in 2002 and again 12 months after the passage of Severe Tropical Cyclone Larry (March 2006). The spatial configuration of sites allowed us to test if the effects of a cyclone and those from fragmentation interact. From all insect samples we extracted 12,568 beetles of 382 species from ten families. Beetle species composition was significantly different pre-and post-cyclone although the magnitude of faunal change was not large with 205 species, representing 96% of all individuals, present in both sampling events. Sites with the greatest changes to structure had the greatest changes in species composition. At the site level, increases in woody debris and wood-feeding beetle (Scolytinae) counts were significantly correlated but changes in the percent of ground vegetation were not mirrored by changes in the abundance of foliage-feeding beetles (Chrysomelidae). The overall direction of beetle assemblage change was consistent with increasing aridity, presumably caused by the loss of canopy cover. Sites with the greatest canopy loss had the strongest changes in the proportion of species previously identified in the pre-cyclone study as preferring arid or moist rainforest environments. The magnitude of fragmentation effects was virtually unaltered by the passage of Cyclone Larry. We postulate that in the short-term the effects of cyclonic disturbance and forest fragmentation both reduce the extent of moist, interior habitat.

Spatio-Temporal Dynamics of Exploited Groundfish Species Assemblages Faced to Environmental and Fishing Forcings: Insights from the Mauritanian Exclusive Economic Zone

PubMed Central

Kidé, Saïkou Oumar; Manté, Claude; Dubroca, Laurent; Demarcq, Hervé; Mérigot, Bastien

2015-01-01

Environmental changes and human activities can have strong impacts on biodiversity and ecosystem functioning. This study investigates how, from a quantitative point of view, simultaneously both environmental and anthropogenic factors affect species composition and abundance of exploited groundfish assemblages (i.e. target and non-target species) at large spatio-temporal scales. We aim to investigate (1) the spatial and annual stability of groundfish assemblages, (2) relationships between these assemblages and structuring factors in order to better explain the dynamic of the assemblages’ structure. The Mauritanian Exclusive Economic Zone (MEEZ) is of particular interest as it embeds a productive ecosystem due to upwelling, producing abundant and diverse resources which constitute an attractive socio-economic development. We applied the multi-variate and multi-table STATICO method on a data set consisting of 854 hauls collected during 14-years (1997–2010) from scientific trawl surveys (species abundance), logbooks of industrial fishery (fishing effort), sea surface temperature and chlorophyll a concentration as environmental variables. Our results showed that abiotic factors drove four main persistent fish assemblages. Overall, chlorophyll a concentration and sea surface temperature mainly influenced the structure of assemblages of coastal soft bottoms and those of the offshore near rocky bottoms where upwellings held. While highest levels of fishing effort were located in the northern permanent upwelling zone, effects of this variable on species composition and abundances of assemblages were relatively low, even if not negligible in some years and areas. The temporal trajectories between environmental and fishing conditions and assemblages did not match for all the entire time series analyzed in the MEEZ, but interestingly for some specific years and areas. The quantitative approach used in this work may provide to stakeholders, scientists and fishers a useful assessment for the spatio-temporal dynamics of exploited assemblages under stable or changing conditions in fishing and environment. PMID:26505198

Light-Dependant Biostabilisation of Sediments by Stromatolite Assemblages

PubMed Central

Paterson, David M.; Aspden, Rebecca J.; Visscher, Pieter T.; Consalvey, Mireille; Andres, Miriam S.; Decho, Alan W.; Stolz, John; Reid, R. Pamela

2008-01-01

For the first time we have investigated the natural ecosystem engineering capacity of stromatolitic microbial assemblages. Stromatolites are laminated sedimentary structures formed by microbial activity and are considered to have dominated the shallows of the Precambrian oceans. Their fossilised remains are the most ancient unambiguous record of early life on earth. Stromatolites can therefore be considered as the first recognisable ecosystems on the planet. However, while many discussions have taken place over their structure and form, we have very little information on their functional ecology and how such assemblages persisted despite strong eternal forcing from wind and waves. The capture and binding of sediment is clearly a critical feature for the formation and persistence of stromatolite assemblages. Here, we investigated the ecosystem engineering capacity of stromatolitic microbial assemblages with respect to their ability to stabilise sediment using material from one of the few remaining living stromatolite systems (Highborne Cay, Bahamas). It was shown that the most effective assemblages could produce a rapid (12–24 h) and significant increase in sediment stability that continued in a linear fashion over the period of the experimentation (228 h). Importantly, it was also found that light was required for the assemblages to produce this stabilisation effect and that removal of assemblage into darkness could lead to a partial reversal of the stabilisation. This was attributed to the breakdown of extracellular polymeric substances under anaerobic conditions. These data were supported by microelectrode profiling of oxygen and calcium. The structure of the assemblages as they formed was visualised by low-temperature scanning electron microscopy and confocal laser microscopy. These results have implications for the understanding of early stromatolite development and highlight the potential importance of the evolution of photosynthesis in the mat forming process. The evolution of photosynthesis may have provided an important advance for the niche construction activity of microbial systems and the formation and persistence of the stromatolites which came to dominate shallow coastal environments for 80% of the biotic history of the earth. PMID:18781202

Light-dependant biostabilisation of sediments by stromatolite assemblages.

PubMed

Paterson, David M; Aspden, Rebecca J; Visscher, Pieter T; Consalvey, Mireille; Andres, Miriam S; Decho, Alan W; Stolz, John; Reid, R Pamela

2008-09-10

For the first time we have investigated the natural ecosystem engineering capacity of stromatolitic microbial assemblages. Stromatolites are laminated sedimentary structures formed by microbial activity and are considered to have dominated the shallows of the Precambrian oceans. Their fossilised remains are the most ancient unambiguous record of early life on earth. Stromatolites can therefore be considered as the first recognisable ecosystems on the planet. However, while many discussions have taken place over their structure and form, we have very little information on their functional ecology and how such assemblages persisted despite strong eternal forcing from wind and waves. The capture and binding of sediment is clearly a critical feature for the formation and persistence of stromatolite assemblages. Here, we investigated the ecosystem engineering capacity of stromatolitic microbial assemblages with respect to their ability to stabilise sediment using material from one of the few remaining living stromatolite systems (Highborne Cay, Bahamas). It was shown that the most effective assemblages could produce a rapid (12-24 h) and significant increase in sediment stability that continued in a linear fashion over the period of the experimentation (228 h). Importantly, it was also found that light was required for the assemblages to produce this stabilisation effect and that removal of assemblage into darkness could lead to a partial reversal of the stabilisation. This was attributed to the breakdown of extracellular polymeric substances under anaerobic conditions. These data were supported by microelectrode profiling of oxygen and calcium. The structure of the assemblages as they formed was visualised by low-temperature scanning electron microscopy and confocal laser microscopy. These results have implications for the understanding of early stromatolite development and highlight the potential importance of the evolution of photosynthesis in the mat forming process. The evolution of photosynthesis may have provided an important advance for the niche construction activity of microbial systems and the formation and persistence of the stromatolites which came to dominate shallow coastal environments for 80% of the biotic history of the earth.

The relative importance of regional, local, and evolutionary factors structuring cryptobenthic coral-reef assemblages

NASA Astrophysics Data System (ADS)

Ahmadia, Gabby N.; Tornabene, Luke; Smith, David J.; Pezold, Frank L.

2018-03-01

Factors shaping coral-reef fish species assemblages can operate over a wide range of spatial scales (local versus regional) and across both proximate and evolutionary time. Niche theory and neutral theory provide frameworks for testing assumptions and generating insights about the importance of local versus regional processes. Niche theory postulates that species assemblages are an outcome of evolutionary processes at regional scales followed by local-scale interactions, whereas neutral theory presumes that species assemblages are formed by largely random processes drawing from regional species pools. Indo-Pacific cryptobenthic coral-reef fishes are highly evolved, ecologically diverse, temporally responsive, and situated on a natural longitudinal diversity gradient, making them an ideal group for testing predictions from niche and neutral theories and effects of regional and local processes on species assemblages. Using a combination of ecological metrics (fish density, diversity, assemblage composition) and evolutionary analyses (testing for phylogenetic niche conservatism), we demonstrate that the structure of cryptobenthic fish assemblages can be explained by a mixture of regional factors, such as the size of regional species pools and broad-scale barriers to gene flow/drivers of speciation, coupled with local-scale factors, such as the relative abundance of specific microhabitat types. Furthermore, species of cryptobenthic fishes have distinct microhabitat associations that drive significant differences in assemblage community structure between microhabitat types, and these distinct microhabitat associations are phylogenetically conserved over evolutionary timescales. The implied differential fitness of cryptobenthic fishes across varied microhabitats and the conserved nature of their ecology are consistent with predictions from niche theory. Neutral theory predictions may still hold true for early life-history stages, where stochastic factors may be more important in explaining recruitment. Overall, through integration of ecological and evolutionary techniques, and using multiple spatial scales, our study offers a unique perspective on factors determining coral-reef fish assemblages.

Lower Miocene plant assemblage with coastal-marsh herbaceous monocots from the Vienna Basin (Slovakia)

NASA Astrophysics Data System (ADS)

Kvaček, Zlatko; Teodoridis, Vasilis; Kováčová, Marianna; Schlögl, Ján; Sitár, Viliam

2014-06-01

A new plant assemblage of Cerová-Lieskové from Lower Miocene (Karpatian) deposits in the Vienna Basin (western Slovakia) is preserved in a relatively deep, upper-slope marine environment. Depositional conditions with high sedimentation rates allowed exceptional preservation of plant remains. The plant assemblage consists of (1) conifers represented by foliage of Pinus hepios and Tetraclinis salicornioides, a seed cone of Pinus cf. ornata, and by pollen of the Cupressaceae, Pinaceae, Pinus sp. and Cathaya sp., and (2) angiosperms represented by Cinnamomum polymorphum, Platanus neptuni, Potamogeton sp. and lauroid foliage, by pollen of Liquidambar sp., Engelhardia sp. and Craigia sp., and in particular by infructescences (so far interpreted as belonging to cereal ears). We validate genus and species assignments of the infructescences: they belong to Palaeotriticum Sitár, including P. mockii Sitár and P. carpaticum Sitár, and probably represent herbaceous monocots that inhabited coastal marshes, similar to the living grass Spartina. Similar infructescences occur in the Lower and Middle Miocene deposits of the Carpathian Foredeep (Slup in Moravia), Tunjice Hills (Žale in Slovenia), and probably also in the Swiss Molasse (Lausanne). This plant assemblage demonstrates that the paleovegetation was represented by evergreen woodland with pines and grasses in undergrowth, similar to vegetation inhabiting coastal brackish marshes today. It also indicates subtropical climatic conditions in the Vienna Basin (central Paratethys), similar to those implied by other coeval plant assemblages from Central Europe

SPATIAL PATTERNS IN ASSEMBLAGE STRUCTURES OF PELAGIC FORAGE FISH AND ZOOPLANKTON IN WESTERN LAKE SUPERIOR

EPA Science Inventory

This manuscript reports on the spatial distribution of zooplankton and forage fish in western Lake Superior. Fish and zooplankton assemblages are shown to differ substantially in abundance and size structure both between the open lake and nearshore regions and between two differe...

Evaluating habitat associations of a fish assemblage at multiple spatial scales in a minimally disturbed stream using low-cost remote sensing

USGS Publications Warehouse

Cheek, Brandon D.; Grabowski, Timothy B.; Bean, Preston T.; Groeschel, Jillian R.; Magnelia, Stephan J.

2016-01-01

Habitat heterogeneity at multiple scales is a major factor affecting fish assemblage structure. However, assessments that examine these relationships at multiple scales concurrently are lacking. The lack of assessments at these scales is a critical gap in understanding as conservation and restoration efforts typically work at these levels.A combination of low-cost side-scan sonar surveys, aerial imagery using an unmanned aerial vehicle, and fish collections were used to evaluate the relationship between physicochemical and landscape variables at various spatial scales (e.g. micro-mesohabitat, mesohabitat, channel unit, stream reach) and stream–fish assemblage structure and habitat associations in the South Llano River, a spring-fed second-order stream on the Edwards Plateau in central Texas during 2012–2013.Low-cost side-scan sonar surveys have not typically been used to generate data for riverscape assessments of assemblage structure, thus the secondary objective was to assess the efficacy of this approach.The finest spatial scale (micro-mesohabitat) and the intermediate scale (channel unit) had the greatest explanatory power for variation in fish assemblage structure.Many of the fish endemic to the Edwards Plateau showed similar associations with physicochemical and landscape variables suggesting that conservation and restoration actions targeting a single endemic species may provide benefits to a large proportion of the endemic species in this system.Low-cost side-scan sonar proved to be a cost-effective means of acquiring information on the habitat availability of the entire river length and allowed the assessment of how a full suite of riverscape-level variables influenced local fish assemblage structure.

Evaluation of afforestation development and natural colonization on a reclaimed mine site

Treesearch

Diana Laarmann; Henn Korjus; Allan Sims; Ahto Kangur; Andres Kiviste; John Stanturf

2015-01-01

Post-mining restoration sites often develop novel ecosystems as soil conditions are completely new and ecosystem assemblage can be spontaneous even on afforested sites. This study presents results from long-term monitoring and evaluation of an afforested oil-shale quarry in Estonia. The study is based on chronosequence data of soil and vegetation and comparisons are...

A climatic and taxonomic comparison between leaf litter and standing vegetation from a Florida swamp woodland

Treesearch

David L. Dilcher; Elizabeth A. Kowalski; Michael C. Wiemann; Luis Felipe Hinojosa; Terry A. Lott

2009-01-01

One method to determine past climate has been the use of leaf morphological characteristics of fossil leaves quantified using modern climate and canopy leaf characteristics. Fossil assemblages are composed of abscised leaves, and climate may be more accurately determined by using leaves from leaf litter instead of the canopy. To better understand whether taphonomic...

Rapid continental-scale vegetation response to the Younger Dryas Cool Episode

NASA Astrophysics Data System (ADS)

Peros, M.; Gajewski, K.; Viau, A.

2006-12-01

The Younger Dryas Cool Episode had rapid and widespread effects on flora and fauna throughout the Americas. Fossil pollen records document how plant communities responded to this event, although such data are generally only representative of changes at local- to regional-scales. We use a new approach to provide insight into vegetation responses to the Younger Dryas at a continental-scale, by focusing on data extracted for a single taxon (Populus poplar, cottonwood, aspen) from pollen diagrams throughout North America. We show that Populus underwent a rapid and continent-wide decline as the climate rapidly cooled and dried. At the termination of the Younger Dryas, Populus underwent another widespread decline, this time in response to competition from boreal and temperate taxa as the climate abruptly warmed. Late glacial-early Holocene pollen assemblages with high quantities of Populus pollen often lack modern analogues and thus confound quantitative paleoclimatic reconstructions; our results provide a context to interpret these assemblages. Furthermore, while Populus may continue to expand in the future in response to human disturbance and increasing temperatures, its sensitivity to competition may eventually put it at risk as global warming accelerates.

Palynostratigraphy and depositional environment of Vastan Lignite Mine (Early Eocene), Gujarat, western India

NASA Astrophysics Data System (ADS)

Rao, M. R.; Sahni, Ashok; Rana, R. S.; Verma, Poonam

2013-04-01

Early Eocene sedimentary successions of south Asia, are marked by the development of extensive fossil-bearing, lignite-rich sediments prior to the collision of India with Asia and provide data on contemporary equatorial faunal and vegetational assemblages. One such productive locality in western India is the Vastan Lignite Mine representing approximately a 54-52 Ma sequence dated by the presence of benthic zone marker species, Nummulites burdigalensis burdigalensis. The present study on Vastan Lignite Mine succession is based on the spore-pollen and dinoflagellate cyst assemblages and documents contemporary vegetational changes. 86 genera and 105 species belonging to algal remains (including dinoflagellate cysts), fungal remains, pteridophytic spores and angiospermous pollen grains have been recorded. On the basis of first appearance, acme and decline of palynotaxa, three cenozones have been recognized and broadly reflect changing palaeodepositional environments. These are in ascending stratigraphic order (i) Proxapertites Spp. Cenozone, (ii) Operculodinium centrocarpum Cenozone and (iii) Spinizonocolpites Spp. Cenozone. The basal sequence is lagoonal, palm-dominated and overlain by more open marine conditions with dinoflagellate cysts and at the top, mangrove elements are dominant. The succession has also provided a unique record of fish, lizards, snakes, and mammals.

Effects of climate change on forest vegetation in the Northern Rockies Region [Chapter 6

USGS Publications Warehouse

Keane, Robert E.; Mahalovich, Mary Frances; Bollenbacher, Barry L.; Manning, Mary E.; Loehman, Rachel A.; Jain, Terrie B.; Holsinger, Lisa M.; Larson, Andrew J.; Webster, Meredith M.

2018-01-01

The projected rapid changes in climate will affect the unique vegetation assemblages of the Northern Rockies region in myriad ways, both directly through shifts in vegetation growth, mortality, and regeneration, and indirectly through changes in disturbance regimes and interactions with changes in other ecosystem processes, such as hydrology, snow dynamics, and exotic invasions (Bonan 2008; Hansen and Phillips 2015; Hansen et al. 2001; Notaro et al. 2007). These impacts, taken collectively, could change the way vegetation is managed by public land agencies in this area. Some species may be in danger of rapid decreases in abundance, while others may undergo range expansion (Landhäusser et al. 2010). New vegetation communities may form, while historical vegetation complexes may simply shift to other areas of the landscape or become rare. Juxtaposed with climate change concerns are the consequences of other land management policies and past activities, such as fire exclusion, fuels treatments, and grazing. A thorough assessment of the responses of vegetation to projected climate change is needed, along with an evaluation of the vulnerability of important species, communities, and vegetation-related resources that may be influenced by the effects, both direct and indirect, of climate change. This assessment must also account for past management actions and current vegetation conditions and their interactions with future climates.

Determinism in fish assemblages of floodplain lakes of the vastly disturbed Mississippi Alluvial Valley

USGS Publications Warehouse

Miranda, L.E.; Lucas, G.M.

2004-01-01

The Mississippi Alluvial Valley between southern Illinois and southern Louisiana contains hundreds of floodplain lakes, most of which have been adversely affected by landscape modifications used to control flooding and support agriculture. We examined fish assemblages in lakes of this region to determine whether deterministic patterns developed in relation to prominent abiotic lake characteristics and to explore whether relevant abiotic factors could be linked to specific assemblage structuring mechanisms. The distributions of 14 taxa in 29 lakes were governed primarily by two gradients that contrasted assemblages in terms of lake area, lake elongation, and water clarity. The knowledge of whether a lake was clear or turbid, large or small, and long or short helped determine fish assemblage characteristics. Abiotic factors influenced fish assemblage structures, plausibly through limitations on foraging and physiological tolerances. Determinism in assemblage organization of floodplain lakes relative to recurrence in physicochemical features has been documented for unaltered rivers. Whereas the Mississippi Alluvial Valley has been subjected to vast anthropogenic disturbances and is not a fully functional floodplain river, fish assemblages in its floodplain lakes remain deterministic and organized by the underlying factors that also dictate assemblages in unaltered rivers. In advanced stages of lake aging, fish assemblages in these lakes are expected to largely include species that thrive in turbid, shallow systems with few predators and low oxygen concentrations. The observed patterns related to physical characteristics of these lakes suggest three general conservation foci, including (1) watershed management to control erosion, (2) removal of sediments or increases in water level to alleviate depth reductions and derived detriments to water physicochemistry, and (3) management of fish populations through stockings, removals, and harvest regulations.

Strong genetic structure revealed by multilocus patterns of variation in Giardia duodenalis isolates of patients from Galicia (NW-Iberian Peninsula).

PubMed

Gabín-García, Luis B; Bartolomé, Carolina; Abal-Fabeiro, José L; Méndez, Santiago; Llovo, José; Maside, Xulio

2017-03-01

We report a survey of genetic variation at three coding loci in Giardia duodenalis of assemblages A and B obtained from stool samples of patients from Santiago de Compostela (Galicia, NW-Iberian Peninsula). The mean pooled synonymous diversity for assemblage A was nearly five times lower than for assemblage B (0.77%±0.30% and 4.14%±1.65%, respectively). Synonymous variation in both assemblages was in mutation-drift equilibrium and an excess of low-frequency nonsynonymous variants suggested the action of purifying selection at the three loci. Differences between isolates contributed to 40% and 60% of total genetic variance in assemblages A and B, respectively, which revealed a significant genetic structure. These results, together with the lack of evidence for recombination, support that (i) Giardia assemblages A and B are in demographic equilibrium and behave as two genetically isolated populations, (ii) infections are initiated by a reduced number of individuals, which may be genetically diverse and even belong to different assemblages, and (iii) parasites reproduce clonally within the host. However, the observation of invariant loci in some isolates means that mechanisms for the homogenization of the genetic content of the two diploid nuclei in each individual must exist. Copyright © 2016 Elsevier B.V. All rights reserved.

Protolith relations of the Gravina belt and Yukon-Tanana terrane in central southeastern Alaska

DOE Office of Scientific and Technical Information (OSTI.GOV)

McClelland, W.C.; Gehrels, G.E.; Patchett, P.J.

1992-01-01

Metamorphic rocks west of the Coast Mountains batholith in central southeastern Alaska are divided into the Gravina belt, Taku terrane, and newly defined Ruth assemblage. The Ruth assemblage comprises metapelite, quartzose metaclastic strata, quartzite, marble, felsic metatuff, mafic metavolcanic rocks, and orthogneiss. Depositional and emplacement ages of 367 {plus minus} 10 Ma and 345 {plus minus} 13 Ma inferred from discordant U/Pb zircon analyses on felsic metatuff and granodioritic orthogneiss, respectively, require that at least portions of the Ruth assemblage be Late Devonian and early Mississippian in age. The assemblage is similar in age and protolith to, and thus correlatedmore » with, the Yukon-Tanana terrane. The Gravina belt is characterized by upper Jurassic and lower Cretaceous mafic volcanic rocks and tuffaceous turbiditic clastic strata that unconformably overlie the Alexander terrane. Metamorphic rocks that structurally underlie the Taku terrane and Rugh assemblage are included in this assemblage. Trace element geochemistry and the abundance of pyroclastic flows associated with tuffaceous turbidites suggest that the Gravina belt evolved in an intra-arc basinal setting. In central southeastern Alaska, the mid-Cretaceous structure that currently separates the Ruth assemblage (Yukon-Tanana correlative) from the Gravina belt marks the fundamental boundary between the Alexander-Wrangellia terrane and inboard Yukon-Tanana and Stikine terranes.« less

Spatial and temporal patterns in fish assemblages of upper coastal plain streams, Mississippi, USA

Treesearch

Susan B. Adams; Melvin L. Warren; Wendell R. Haag

2004-01-01

We assessed spatial, seasonal, and annual variation in fish assemblages over 17 months in three small- to medium-sized, incised streams characteristic of northwestern Mississippi streams. We sampled 17 962 fish representing 52 species and compared assemblages within and among streams. Although annual and seasonal variability inassemblage structure was high, fish...

Influence of Fish Predation on Assemblage Structure of Macroinvertebrates in an Intermittent Stream

Treesearch

Lance R. Williams; Christopher M. Taylor; Melvin L. Warren

2003-01-01

Despite considerable investigation of stream systems, the influence of fish predation on macroinvertebrate assemblages is still poorly understood and remains a controversial subject. We conducted a field experiment in an intermittent reach of Alum Creek in the Ouachita Mountains, Arkansas, to examine the effects of predatory fish on macroinvertebrate assemblages. We...

Survival of ship biofouling assemblages during and after voyages to the Canadian Arctic.

PubMed

Chan, Farrah T; MacIsaac, Hugh J; Bailey, Sarah A

2016-01-01

Human-mediated vectors often inadvertently translocate species assemblages to new environments. Examining the dynamics of entrained species assemblages during transport can provide insights into the introduction risk associated with these vectors. Ship biofouling is a major transport vector of nonindigenous species in coastal ecosystems globally, yet its magnitude in the Arctic is poorly understood. To determine whether biofouling organisms on ships can survive passages in Arctic waters, we examined how biofouling assemblage structure changed before, during, and after eight round-trip military voyages from temperate to Arctic ports in Canada. Species richness first decreased (~70% loss) and then recovered (~27% loss compared to the original assemblages), as ships travelled to and from the Arctic, respectively, whereas total abundance typically declined over time (~55% total loss). Biofouling community structure differed significantly before and during Arctic transits as well as between those sampled during and after voyages. Assemblage structure varied across different parts of the hull; however, temporal changes were independent of hull location, suggesting that niche areas did not provide protection for biofouling organisms against adverse conditions in the Arctic. Biofouling algae appear to be more tolerant of transport conditions during Arctic voyages than are mobile, sessile, and sedentary invertebrates. Our results suggest that biofouling assemblages on ships generally have poor survivorship during Arctic voyages. Nonetheless, some potential for transporting nonindigenous species to the Arctic via ship biofouling remains, as at least six taxa new to the Canadian Arctic, including a nonindigenous cirripede, appeared to have survived transits from temperate to Arctic ports.

Climate mediates the effects of disturbance on ant assemblage structure.

PubMed

Gibb, Heloise; Sanders, Nathan J; Dunn, Robert R; Watson, Simon; Photakis, Manoli; Abril, Silvia; Andersen, Alan N; Angulo, Elena; Armbrecht, Inge; Arnan, Xavier; Baccaro, Fabricio B; Bishop, Tom R; Boulay, Raphael; Castracani, Cristina; Del Toro, Israel; Delsinne, Thibaut; Diaz, Mireia; Donoso, David A; Enríquez, Martha L; Fayle, Tom M; Feener, Donald H; Fitzpatrick, Matthew C; Gómez, Crisanto; Grasso, Donato A; Groc, Sarah; Heterick, Brian; Hoffmann, Benjamin D; Lach, Lori; Lattke, John; Leponce, Maurice; Lessard, Jean-Philippe; Longino, John; Lucky, Andrea; Majer, Jonathan; Menke, Sean B; Mezger, Dirk; Mori, Alessandra; Munyai, Thinandavha C; Paknia, Omid; Pearce-Duvet, Jessica; Pfeiffer, Martin; Philpott, Stacy M; de Souza, Jorge L P; Tista, Melanie; Vasconcelos, Heraldo L; Vonshak, Merav; Parr, Catherine L

2015-06-07

Many studies have focused on the impacts of climate change on biological assemblages, yet little is known about how climate interacts with other major anthropogenic influences on biodiversity, such as habitat disturbance. Using a unique global database of 1128 local ant assemblages, we examined whether climate mediates the effects of habitat disturbance on assemblage structure at a global scale. Species richness and evenness were associated positively with temperature, and negatively with disturbance. However, the interaction among temperature, precipitation and disturbance shaped species richness and evenness. The effect was manifested through a failure of species richness to increase substantially with temperature in transformed habitats at low precipitation. At low precipitation levels, evenness increased with temperature in undisturbed sites, peaked at medium temperatures in disturbed sites and remained low in transformed sites. In warmer climates with lower rainfall, the effects of increasing disturbance on species richness and evenness were akin to decreases in temperature of up to 9°C. Anthropogenic disturbance and ongoing climate change may interact in complicated ways to shape the structure of assemblages, with hot, arid environments likely to be at greatest risk. © 2015 The Author(s) Published by the Royal Society. All rights reserved.

Are the Most Plastic Species the Most Abundant Ones? An Assessment Using a Fish Assemblage

PubMed Central

Vidal, Nicolás; Zaldúa, Natalia; D'Anatro, Alejandro; Naya, Daniel E.

2014-01-01

Few studies have evaluated phenotypic plasticity at the community level, considering, for example, plastic responses in an entire species assemblage. In addition, none of these studies have addressed the relationship between phenotypic plasticity and community structure. Within this context, here we assessed the magnitude of seasonal changes in digestive traits (seasonal flexibility), and of changes during short-term fasting (flexibility during fasting), occurring in an entire fish assemblage, comprising ten species, four trophic levels, and a 37-fold range in body mass. In addition, we analyzed the relationship between estimates of digestive flexibility and three basic assemblage structure attributes, i.e., species trophic position, body size, and relative abundance. We found that: (1) Seasonal digestive flexibility was not related with species trophic position or with body size; (2) Digestive flexibility during fasting tended to be inversely correlated with body size, as expected from scaling relationships; (3) Digestive flexibility, both seasonal and during fasting, was positively correlated with species relative abundance. In conclusion, the present study identified two trends in digestive flexibility in relation to assemblage structure, which represents an encouraging departure point in the search of general patterns in phenotypic plasticity at the local community scale. PMID:24651865

Impacts of fishing and environmental factors driving changes on littoral fish assemblages in a subtropical oceanic island

NASA Astrophysics Data System (ADS)

Sangil, Carlos; Martín-García, Laura; Hernández, José Carlos; Concepción, Laura; Fernández, Raúl; Clemente, Sabrina

2013-08-01

The structure of demersal fish assemblages of commercial interest was studied at 51 sites on La Palma Island (Canary Islands, northeastern Atlantic). On this island, demersal fish populations are limited and independent from other islands. As deep water separates the islands and the shallow sublittoral platforms are not continuous, adult inter-island migrations are not possible except between the islands of Lanzarote and Fuerteventura. Otherwise, each island functions as a closed system, and the status of an island fish assemblage depends on local environmental conditions and activities performed in situ by the islanders. These circumstances provide a unique opportunity to test the intrainsular variability of fish assemblages. With this background, environmental parameters, fishing pressure and distance to the MPA were considered to identify the main factors explaining the spatial variation of fish assemblages off La Palma Island. Twenty-six fish species were recorded, but 60% of the total fish biomass was represented by only five species (Sparisoma cretense, Pomadasys incisus, Canthidermis sufflamen, Diplodus cervinus cervinus and Bodianus scrofa). However, the structure of assemblages was heterogeneous in response to different variables and showed substantial spatial variation. The assemblages were strongly modified by the presence of upright seaweed cover, fishing activities, and certain environmental variables. Differences were more pronounced in species that occupied the higher trophic levels. The most disturbed assemblages were those located in areas with lower upright seaweed cover and with higher fishing pressure, whereas the best-preserved assemblages corresponded to sites with controlled fishing activities, located within the MPA.

Habitat characteristics affecting fish assemblages on a Hawaiian coral reef

USGS Publications Warehouse

Friedlander, A.M.; Parrish, J.D.

1998-01-01

Habitat characteristics of a reef were examined as potential influences on fish assemblage structure, using underwater visual census to estimate numbers and biomass of all fishes visible on 42 benthic transects and making quantitative measurements of 13 variables of the corresponding physical habitat and sessile biota. Fish assemblages in the diverse set of benthic habitats were grouped by detrended correspondence analysis, and associated with six major habitat types. Statistical differences were shown between a number of these habitat types for various ensemble variables of the fish assemblages. Overall, both for complete assemblages and for component major trophic and mobility guilds, these variables tended to have higher values where reef substratum was more structurally or topographically complex, and closer to reef edges. When study sites were separately divided into five depth strata, the deeper strata tended to have statistically higher values of ensemble variables for the fish assemblages. Patterns with depth varied among the various trophic and mobility guilds. Multiple linear regression models indicated that for the complete assemblages and for most trophic and mobility guilds, a large part of the variability for most ensemble variables was explained by measures of holes in the substratum, with important contributions from measured substratum rugosity and depth. A strong linear relationship found by regression of mean fish length on mean volume of holes in the reef surface emphasized the importance of shelter for fish assemblages. Results of this study may have practical applications in designing reserve areas as well as theoretical value in helping to explain the organization of reef fish assemblages.

Influence of Interspecific Competition and Landscape Structure on Spatial Homogenization of Avian Assemblages

PubMed Central

Robertson, Oliver J.; McAlpine, Clive; House, Alan; Maron, Martine

2013-01-01

Human-induced biotic homogenization resulting from landscape change and increased competition from widespread generalists or ‘winners’, is widely recognized as a global threat to biodiversity. However, it remains unclear what aspects of landscape structure influence homogenization. This paper tests the importance of interspecific competition and landscape structure, for the spatial homogeneity of avian assemblages within a fragmented agricultural landscape of eastern Australia. We used field observations of the density of 128 diurnal bird species to calculate taxonomic and functional similarity among assemblages. We then examined whether taxonomic and functional similarity varied with patch type, the extent of woodland habitat, land-use intensity, habitat subdivision, and the presence of Manorina colonies (a competitive genus of honeyeaters). We found the presence of a Manorina colony was the most significant factor positively influencing both taxonomic and functional similarity of bird assemblages. Competition from members of this widespread genus of native honeyeater, rather than landscape structure, was the main cause of both taxonomic and functional homogenization. These species have not recently expanded their range, but rather have increased in density in response to agricultural landscape change. The negative impacts of Manorina honeyeaters on assemblage similarity were most pronounced in landscapes of moderate land-use intensity. We conclude that in these human-modified landscapes, increased competition from dominant native species, or ‘winners’, can result in homogeneous avian assemblages and the loss of specialist species. These interacting processes make biotic homogenization resulting from land-use change a global threat to biodiversity in modified agro-ecosystems. PMID:23724136

Species Identity Supersedes the Dilution Effect Concerning Hantavirus Prevalence at Sites across Texas and México.

PubMed

Milholland, Matthew T; Castro-Arellano, Iván; Arellano, Elizabeth; Nava-García, Elizabeth; Rangel-Altamirano, Guadalupe; Gonzalez-Cozatl, Francisco X; Suzán, Gerardo; Schountz, Tony; González-Padrón, Shiara; Vigueras, Ana; Rubio, André V; Maikis, Troy J; Westrich, Bradford J; Martinez, Jose A; Esteve-Gassent, Maria D; Torres, Madison; Rodriguez-Ruiz, Erick R; Hahn, Dittmar; Lacher, Thomas E

2017-12-15

Recent models suggest a relationship exists between community diversity and pathogen prevalence, the proportion of individuals in a population that are infected by a pathogen, with most inferences tied to assemblage structure. Two contrasting outcomes of this relationship have been proposed: the "dilution effect" and the "amplification effect." Small mammal assemblage structure in disturbed habitats often differs from assemblages in sylvan environments, and hantavirus prevalence is often negatively correlated with habitats containing high species diversity via dilution effect dynamics. As species richness increases, prevalence of infection often is decreased. However, anthropogenic changes to sylvan landscapes have been shown to decrease species richness and/or increase phylogenetic similarities within assemblages. Between January 2011 and January 2016, we captured and tested 2406 individual small mammals for hantavirus antibodies at 20 sites across Texas and México and compared differences in hantavirus seroprevalence, species composition, and assemblage structure between sylvan and disturbed habitats. We found 313 small mammals positive for antibodies against hantaviruses, evincing an overall prevalence of 9.7% across all sites. In total, 40 species of small mammals were identified comprising 2 taxonomic orders (Rodentia and Eulipotyphla). By sampling both habitat types concurrently, we were able to make real-world inferences into the efficacy of dilution effect theory in terms of hantavirus ecology. Our hypothesis predicting greater species richness higher in sylvan habitats compared to disturbed areas was not supported, suggesting the characteristics of assemblage structure do not adhere to current conceptions of species richness negatively influencing prevalence via a dilution effect.

REGIONAL, WATERSHED, AND SITE-SPECIFIC ENVIRONMENTAL INFLUENCES ON FISH ASSEMBLAGE STRUCTURE AND FUNCTION IN WESTERN LAKE SUPERIOR TRIBUTARIES

EPA Science Inventory

The relative importance of regional, watershed, and in-stream environmental factors on stream fish assemblage structure and function was investigated as part of a comparative watershed project in the western Lake Superior basin. We selected 48 second and third order watersheds fr...

Invertebrate community response to a shifting mosaic of habitat

USGS Publications Warehouse

Engle, David M.; Fuhlendorf, S.D.; Roper, A.; Leslie, David M.

2008-01-01

Grazing management has focused largely on promoting vegetation homogeneity through uniform distribution of grazing to minimize area in a pasture that is either heavily disturbed or undisturbed. An alternative management model that couples grazing and fire (i.e., patch burning) to promote heterogeneity argues that grazing and fire interact through a series of positive and negative feedbacks to cause a shifting mosaic of vegetation composition and structure across the landscape. We compared patch burning with traditional homogeneity-based management in tallgrass prairie to determine the influence of the two treatments on the aboveground invertebrate community. Patch burning resulted in a temporal flush of invertebrate biomass in patches transitional between unburned and patches burned in the current year. Total invertebrate mass was about 50% greater in these transitional patches within patch-burned pastures as compared to pastures under traditional, homogeneity-based management. Moreover, the mosaic of patches in patch-burned pastures contained a wider range of invertebrate biomass and greater abundance of some invertebrate orders than did the traditionally managed pastures. Patch burning provides habitat that meets requirements for a broad range of invertebrate species, suggesting the potential for patch burning to benefit other native animal assemblages in the food chain.

Ungulate browsers promote herbaceous layer diversity in logged temperate forests

USGS Publications Warehouse

Faison, Edward K.; DeStefano, Stephen; Foster, David R.; Motzkin, Glenn; Rapp, Josh

2016-01-01

Ungulates are leading drivers of plant communities worldwide, with impacts linked to animal density, disturbance and vegetation structure, and site productivity. Many ecosystems have more than one ungulate species; however, few studies have specifically examined the combined effects of two or more species on plant communities. We examined the extent to which two ungulate browsers (moose [Alces americanus]) and white-tailed deer [Odocoileus virginianus]) have additive (compounding) or compensatory (opposing) effects on herbaceous layer composition and diversity, 5–6 years after timber harvest in Massachusetts, USA. We established three combinations of ungulates using two types of fenced exclosures – none (full exclosure), deer (partial exclosure), and deer + moose (control) in six replicated blocks. Species composition diverged among browser treatments, and changes were generally additive. Plant assemblages characteristic of closed canopy forests were less abundant and assemblages characteristic of open/disturbed habitats were more abundant in deer + moose plots compared with ungulate excluded areas. Browsing by deer + moose resulted in greater herbaceous species richness at the plot scale (169 m2) and greater woody species richness at the subplot scale (1 m2) than ungulate exclusion and deer alone. Browsing by deer + moose resulted in strong changes to the composition, structure, and diversity of forest herbaceous layers, relative to areas free of ungulates and areas browed by white-tailed deer alone. Our results provide evidence that moderate browsing in forest openings can promote both herbaceous and woody plant diversity. These results are consistent with the classic grazing-species richness curve, but have rarely been documented in forests.

Biological assessment of aquaculture effects on effluent-receiving streams in Ghana using structural and functional composition of fish and macroinvertebrate assemblages.

PubMed

Ansah, Yaw Boamah; Frimpong, Emmanuel A; Amisah, Stephen

2012-07-01

Biological assessment of aquatic ecosystems is widely employed as an alternative or complement to chemical and toxicity testing due to numerous advantages of using biota to determine ecosystem condition. These advantages, especially to developing countries, include the relatively low cost and technical requirements. This study was conducted to determine the biological impacts of aquaculture operations on effluent-receiving streams in the Ashanti Region of Ghana. We collected water, fish and benthic macroinvertebrate samples from 12 aquaculture effluent-receiving streams upstream and downstream of fish farms and 12 reference streams between May and August of 2009, and then calculated structural and functional metrics for biotic assemblages. Fish species with non-guarding mode of reproduction were more abundant in reference streams than downstream (P = 0.0214) and upstream (P = 0.0251), and sand-detritus spawning fish were less predominant in reference stream than upstream (P = 0.0222) and marginally less in downstream locations (P = 0.0539). A possible subsidy-stress response of macroinvertebrate family richness and abundance was also observed, with nutrient (nitrogen) augmentation from aquaculture and other farming activities likely. Generally, there were no, or only marginal differences among locations downstream and upstream of fish farms and in reference streams in terms of several other biotic metrics considered. Therefore, the scale of impact in the future will depend not only on the management of nutrient augmentation from pond effluents, but also on the consideration of nutrient discharges from other industries like fruit and vegetable farming within the study area.

Cenozoic imprints on the phylogenetic structure of palm species assemblages worldwide.

PubMed

Kissling, W Daniel; Eiserhardt, Wolf L; Baker, William J; Borchsenius, Finn; Couvreur, Thomas L P; Balslev, Henrik; Svenning, Jens-Christian

2012-05-08

Despite long-standing interest in the origin and maintenance of species diversity, little is known about historical drivers of species assemblage structure at large spatiotemporal scales. Here, we use global species distribution data, a dated genus-level phylogeny, and paleo-reconstructions of biomes and climate to examine Cenozoic imprints on the phylogenetic structure of regional species assemblages of palms (Arecaceae), a species-rich plant family characteristic of tropical ecosystems. We find a strong imprint on phylogenetic clustering due to geographic isolation and in situ diversification, especially in the Neotropics and on islands with spectacular palm radiations (e.g., Madagascar, Hawaii, and Cuba). Phylogenetic overdispersion on mainlands and islands corresponds to biotic interchange areas. Differences in the degree of phylogenetic clustering among biogeographic realms are related to differential losses of tropical rainforests during the Cenozoic, but not to the cumulative area of tropical rainforest over geological time. A largely random phylogenetic assemblage structure in Africa coincides with severe losses of rainforest area, especially after the Miocene. More recent events also appear to be influential: phylogenetic clustering increases with increasing intensity of Quaternary glacial-interglacial climatic oscillations in South America and, to a lesser extent, Africa, indicating that specific clades perform better in climatically unstable regions. Our results suggest that continental isolation (in combination with limited long-distance dispersal) and changing climate and habitat loss throughout the Cenozoic have had strong impacts on the phylogenetic structure of regional species assemblages in the tropics.

Simulated and Inferred LAI, NPP, and Biomes in North America Since the Last Glacial Maximum.

NASA Astrophysics Data System (ADS)

Zajac, L. M.; Williams, J. W.; Kaplan, J.

2004-12-01

Vegetation structure and productivity are sensitive to climate change and are an important source of feedbacks to the climate system. Here we employ multiple lines of evidence to reconstruct variations in leaf area index (LAI), net primary productivity (NPP), and biomes. LAI determines the total canopy surface area available for light interception, gas exchange, and water loss, and NPP, the increase in plant carbon per unit area, measures the flux of carbon into the terrestrial biosphere. BIOME4, an equilibrium biogeography and biogeochemistry vegetation model, is used to simulate LAI, NPP, and biome distributions in North America for the past 21,000 years at 1,000-year time-steps. BIOME4 was coupled asynchronously to the Hadley Center Unified Model with a mixed-layer ocean model forced by variations in orbital boundary conditions, physiography, and atmospheric CO2 concentration (Kaplan et al. 2002). BIOME4 models LAI as a trade-off between maximizing light interception and minimizing water loss and assigns the LAI that maximizes NPP. Past LAI's and biomes, independently estimated from fossil pollen assemblages using the modern analogue technique, are compared to model results. In unglaciated eastern North America, canopy closure of the full-glacial conifer forests and woodlands in response to ameliorating climatic conditions resulted in a 80% increase in LAI's between 21 ka and 11 ka. After 8 ka, large areas of tundra and forest-tundra developed in deglaciated regions. The BIOME4 simulations show good agreement with the LAI's and biome distribution inferred from fossil pollen records. Sensitivity analyses with BIOME4 indicate that both climate and CO2 played important roles in regulating vegetation structure and productivity.

Comparison of species composition and richness of fish assemblages in altered and unaltered littoral habitats

USGS Publications Warehouse

Poe, T.P.; Hatcher, C.O.; Brown, C.L.; Schloesser, D.W.

1986-01-01

Species composition and richness of fish assemblages in altered and unaltered littoral habitats in Lake St. Clair, Michigan, differed between areas. A percid-cyprinid-cyprinodontid assemblage dominated in the unaltered area, Muscamoot Bay, which has a natural shoreline (with almost no alteration due to dredging or bulkheading), high water quality, and high species richness of aquatic macrophytes. A centrarchid assemblage dominated in the altered area, Belvidere Bay, which has a bulkheaded shoreline, many dredged areas, reduced water quality due to inputs of nutrients from a nearby river, and relatively low species richness of aquatic macrophytes. Habitat factors, species richness and abundance of aquatic macrophytes, had the most influence on fish community structure in both areas. The percid-cyprinid-cyprinodontid assemblage was significantly correlated with six species of macrophytes whereas the centrarchid assemblage was significantly correlated with only four. These patterns suggest that preference for diverse habitats was higher, and tolerance to habitat alteration lower, in percid-cyprinid-cyprinodontid assemblages than in centrarchid assemblages.

Assemblage Organization in Stream Fishes: Effects of Enviromental Variation and Interspecific Interactions

Treesearch

Gary D. Grossman; Robert E. Ratajczak; Maurice Crawford; Mary C. Freeman

1998-01-01

We assessed the relative importance of environmental variation, interspecific competition for space, and predator abundance on assemblage structure and microhabitat use in a stream fish assemblage inhabiting Coweeta Creek, North Carolina, USA. Our study encompassed a l0-yr time span (1983-1992) and included some of the highest and lowest flows in the last 58 years. We...

Testing the effect of habitat structure and complexity on nekton assemblages using experimental oyster reefs

USGS Publications Warehouse

Humphries, Austin T.; LaPeyre, Megan K.; Kimball, Matthew E.; Rozas, Lawrence P.

2011-01-01

Structurally complex habitats are often associated with more diverse and abundant species assemblages in both aquatic and terrestrial ecosystems. Biogenic reefs formed by the eastern oyster (Crassostrea virginica) are complex in nature and are recognized for their potential habitat value in estuarine systems along the US Atlantic and Gulf of Mexico coasts. Few studies, however, have examined the response of nekton to structural complexity within oyster reefs. We used a quantitative sampling technique to examine how the presence and complexity of experimental oyster reefs influence the abundance, biomass, and distribution of nekton by sampling reefs 4 months and 16 months post-construction. Experimental oyster reefs were colonized immediately by resident fishes and decapod crustaceans, and reefs supported a distinct nekton assemblage compared to mud-bottom habitat. Neither increased reef complexity, nor age of the experimental reef resulted in further changes in nekton assemblages or increases in nekton abundance or diversity. The presence of oyster reefs per se was the most important factor determining nekton usage.

Rare species contribute disproportionately to the functional structure of species assemblages.

PubMed

Leitão, Rafael P; Zuanon, Jansen; Villéger, Sébastien; Williams, Stephen E; Baraloto, Christopher; Fortunel, Claire; Mendonça, Fernando P; Mouillot, David

2016-04-13

There is broad consensus that the diversity of functional traits within species assemblages drives several ecological processes. It is also widely recognized that rare species are the first to become extinct following human-induced disturbances. Surprisingly, however, the functional importance of rare species is still poorly understood, particularly in tropical species-rich assemblages where the majority of species are rare, and the rate of species extinction can be high. Here, we investigated the consequences of local and regional extinctions on the functional structure of species assemblages. We used three extensive datasets (stream fish from the Brazilian Amazon, rainforest trees from French Guiana, and birds from the Australian Wet Tropics) and built an integrative measure of species rarity versus commonness, combining local abundance, geographical range, and habitat breadth. Using different scenarios of species loss, we found a disproportionate impact of rare species extinction for the three groups, with significant reductions in levels of functional richness, specialization, and originality of assemblages, which may severely undermine the integrity of ecological processes. The whole breadth of functional abilities within species assemblages, which is disproportionately supported by rare species, is certainly critical in maintaining ecosystems particularly under the ongoing rapid environmental transitions. © 2016 The Author(s).

Rare species contribute disproportionately to the functional structure of species assemblages

PubMed Central

Zuanon, Jansen; Williams, Stephen E.; Baraloto, Christopher; Mendonça, Fernando P.

2016-01-01

There is broad consensus that the diversity of functional traits within species assemblages drives several ecological processes. It is also widely recognized that rare species are the first to become extinct following human-induced disturbances. Surprisingly, however, the functional importance of rare species is still poorly understood, particularly in tropical species-rich assemblages where the majority of species are rare, and the rate of species extinction can be high. Here, we investigated the consequences of local and regional extinctions on the functional structure of species assemblages. We used three extensive datasets (stream fish from the Brazilian Amazon, rainforest trees from French Guiana, and birds from the Australian Wet Tropics) and built an integrative measure of species rarity versus commonness, combining local abundance, geographical range, and habitat breadth. Using different scenarios of species loss, we found a disproportionate impact of rare species extinction for the three groups, with significant reductions in levels of functional richness, specialization, and originality of assemblages, which may severely undermine the integrity of ecological processes. The whole breadth of functional abilities within species assemblages, which is disproportionately supported by rare species, is certainly critical in maintaining ecosystems particularly under the ongoing rapid environmental transitions. PMID:27053754

Do Invertebrate Activity and Current Velocity Affect Fungal Assemblage Structure in Leaves?

NASA Astrophysics Data System (ADS)

Ferreira, Verónica; Graça, Manuel A. S.

2006-02-01

In this study we assessed the effect of current velocity and shredder presence, manipulated in artificial channels, on the structure of the fungal assemblage colonizing alder (Alnus glutinosa (L.) Gaertner) leaves incubated in coarse and fine mesh bags. Fungal sporulation rates, cumulative conidial production and number of species of aquatic hyphomycetes were higher in leaves exposed to high rather than to low current velocity. The opposite was observed regarding Simpson's index (D) on the fungal assemblage. Some species of aquatic hyphomycetes were consistently stimulated in high current channels. No effect of shredders or of mesh type was observed.

Pollen preservation and Quaternary environmental history in the southeastern United States

DOE Office of Scientific and Technical Information (OSTI.GOV)

Delcourt, P.A.; Delcourt, H.R.

Reconstructions of Quaternary environmental history based upon modern pollen/vegetation/climate calibrations are more tenable if the factors responsible for variation in pollen assemblages are evaluated. Examination of the state of preservation of Quaternary palynomorphs provides quantitative data concerning the degree of information loss due to alteration of pollen assemblages by syndepositional and post-depositional deterioration. The percentage, concentration, and influx values for total indeterminable pollen are useful criteria in providing an objective and quantitative basis for evaluating the comparability of pollen spectra within and between sites. Supporting data concerning sediment particle-size distribution, organic matter content, and concentration, influx, and taxonomic composition ofmore » both determinable pollen and plant macrofossils aid in reconstructing past depositional environments. The potential is high for deterioration of pollen in sediments from the southeastern United States, although considerable variation is found in both kind and degree of deterioration between lacustrine and alluvial sites of different ages and in different latitudes. Modern analogs are a basis for late Quaternary environmental reconstructions when pollen deterioration has not significantly biased the information content of fossil pollen assemblages.« less

Long-term trends in the structure of eastern Adriatic littoral fish assemblages: Consequences for fisheries management

NASA Astrophysics Data System (ADS)

Stagličić, N.; Matić-Skoko, S.; Pallaoro, A.; Grgičević, R.; Kraljević, M.; Tutman, P.; Dragičević, B.; Dulčić, J.

2011-09-01

Long-term interannual changes in abundance, biomass, diversity and structure of littoral fish assemblages were examined between 1993 and 2009 by experimental trammel net fishing up to six times per year, within the warm period - May to September, at multiple areas along the eastern Adriatic coast with the aim of testing for the consistency of patterns of change across a large spatial scale (˜600 km). The results revealed spatially consistent increasing trends of total fish abundance and biomass growing at an average rate of 15 and 14% per year, respectively. Of the diversity indices analysed, the same pattern of variability was observed for Shannon diversity, while Pielou evenness and average taxonomic distinctness measures Δ ∗ and Δ + showed spatial variability with no obvious temporal trends. Multivariate fish assemblage structure underwent a directional change displaying a similar pattern through time for all the areas. The structural change in fish assemblages generally involved most of the species present in trammel net catches. A large pool of fish species responsible for producing the temporal pattern of assemblage change was relatively different in each of the areas reflecting a large geographic range covered by the study. An analysis of 4 fish species ( Symphodus tinca, Pagellus erythrinus, Mullus surmuletus, Scorpaena porcus) common to each of the study areas as the ones driving the temporal change indicated that there were clear increasing trends of their mean catches across the years at all the study areas. A common pattern among time trajectories across the spatial scale studied implies that the factor affecting the littoral fish assemblages is not localised but regional in nature. As an underlying factor having the potential to induce such widespread and consistent improvements in littoral fish assemblages, a more restrictive artisanal fishery management that has progressively been put in place during the study period, is suggested and discussed.

Distribution and food habits of young-of-the-year fishes in a backwater lake of the upper Mississippi River

USGS Publications Warehouse

Holland, L.E.; Huston, M.L.

1985-01-01

The distribution patterns and food habits of young-of-the-year (YOY) fishes in a lentic area adjacent to the main channel of Pool 7 of the upper Mississippi River were studied. Habitats sampled grouped distinctly based on percent composition and abundance of YOY fishes with those having submergent vegetation dominated by a number of important sport species. In late spring, the grouping of stations depended on the presence or absence of newly transformed northern pike (Esox lucius). In early summer, stations did not differ as distinctly in composition, but in total abundance of young. Those stations with submergent vegetation had total catches which were more than double those elsewhere. By late summer, submergent and mixed vegetation stations formed a distinct assemblage influenced by the preponderance of three species of sunfishes. (DBO).

Forest vegetation and soil patterns across glade-forest ecotones in the Knobs region of northeastern Kentucky, USA

Treesearch

Charles Rhoades; S. P. Miller; D. L. Skinner

2005-01-01

The Crooked Creek Barrens Preserve in the northeastern Knobs region of Kentucky contains an aggregation of species-rich grass and forb-dominated glade openings surrounded by secondary forest. Encroachment of woody species and invasion by non-native species threaten the rare forbs and sedges of the glades. The locations of these plant assemblages are commonly...

Vegetation response of a dry shrubland community to feral goat management on the island of Moloka‘i, Hawai‘i

USGS Publications Warehouse

Jacobi, James D.; Stock, Jonathan

2017-12-14

The Hawaiian Islands are well known for their unique ecosystem assemblages that have a high proportion of endemic flora and fauna. However, since human colonization of this archipelago—starting with the arrival of Polynesian sailors approximately 1,200 years ago, and particularly following western contact in 1778—thousands of non-native species have been introduced to the Islands and many of these alien species have had severe impacts on the native ecosystems. Particularly damaging to these ecosystems are large mammals, including goats (Capra hircus), pigs (Sus scrofa), cattle (Bos taurus), deer (Axis axis and Odocoileus hemionus), and sheep (Ovis spp.), which are collectively referred to here as ungulates; they cause extensive damage to the native vegetation by their browsing, grazing, and trampling. Similar impacts have been documented elsewhere, including New Zealand and many other island ecosystems.Previous studies in Hawai‘i have utilized fenced exclosures to assess the impacts of feral or wild ungulates on vegetation and the recovery potential for the native plant communities by comparing plant community composition, structure, and cover inside the fenced area (without ungulates) over time to the vegetation condition outside of the protection of the fence. In some cases, the native vegetation recovered once the animals were removed. However, in other situations alien plants were more competitive and dominated the revegetation process after the impacts of ungulates had been reduced or eliminated.This report describes the response of a highly degraded lowland dry habitat plant community located on the south slope of east Moloka‘i, Hawai‘i, to reduction of browsing and grazing impacts caused by feral goats. For this study, vegetation response inside a fenced exclosure was compared to vegetation change in the area outside of the fence that was still accessible to goats. This study is part of the larger U.S. Geological Survey Ridge-to-Reef (USGS-R2R) research project conducted between 2008 and 2014 to better understand the magnitude of, and factors responsible for, increased erosion on Moloka‘i. The upslope erosion has resulted in heavy sedimentation of the near-shore coral reef ecosystem on the leeward side of the island. The project area and adjacent lands are managed by the East Moloka‘i Watershed Partnership (EMoWP) to restore the vegetation and reduce erosion on the leeward side of the island.Specific questions addressed in this vegetation change study include:How does the vegetation composition, structure, and cover respond to different population levels of feral goats in this area?Are there plant species that can be used as indicators of different population levels of goats?Can native plants recover and become dominant again with the reduction or elimination of goats from this area?Are there invasive plant species that respond favorably to reduction of goat populations and could result in additional management threats to this area over time?How does the succession of vegetation following goat control relate to the original composition and structure of the plant communities that were formerly found in this area?

Environmental characteristics drive variation in Amazonian understorey bird assemblages

PubMed Central

Magnusson, William E.; Anderson, Marti J.; Schlegel, Martin; Pe’er, Guy; Henle, Klaus

2017-01-01

Tropical bird assemblages display patterns of high alpha and beta diversity and, as tropical birds exhibit strong habitat specificity, their spatial distributions are generally assumed to be driven primarily by environmental heterogeneity and interspecific interactions. However, spatial distributions of some Amazonian forest birds are also often restricted by large rivers and other large-scale topographic features, suggesting that dispersal limitation may also play a role in driving species’ turnover. In this study, we evaluated the effects of environmental characteristics, topographic and spatial variables on variation in local assemblage structure and diversity of birds in an old-growth forest in central Amazonia. Birds were mist-netted in 72 plots distributed systematically across a 10,000 ha reserve in each of three years. Alpha diversity remained stable through time, but species composition changed. Spatial variation in bird-assemblage structure was significantly related to environmental and topographic variables but not strongly related to spatial variables. At a broad scale, we found bird assemblages to be significantly distinct between two watersheds that are divided by a central ridgeline. We did not detect an effect of the ridgeline per se in driving these patterns, indicating that most birds are able to fly across it, and that differences in assemblage structure between watersheds may be due to unmeasured environmental variables or unique combinations of measured variables. Our study indicates that complex geography and landscape features can act together with environmental variables to drive changes in the diversity and composition of tropical bird assemblages at local scales, but highlights that we still know very little about what makes different parts of tropical forest suitable for different species. PMID:28225774

What can we tell from particle morphology in Mesozoic charcoal assemblages?

NASA Astrophysics Data System (ADS)

Crawford, Alastair; Belcher, Claire

2015-04-01

Sedimentary charcoal particles provide a valuable record of palaeofire activity on both human and geological timescales. Charcoal is both an unambiguous indicator of wildfire, and a means of preservation of plant material in an inert form; thus it records not only the occurrence and extent of wildfire, but also the species affected. While scanning electron microscopy can be usefully employed for precise taxonomic identification of charcoals, the time and cost associated with this limit the extent to which the technique is employed. Morphometric analysis of mesocharcoal particles (c. 125-1000 µm) potentially provides a simple method for obtaining useful information from optical microscopy images. Grass fires have been shown to produce mesocharcoal particles with a higher length-to-width ratio than woodland fuel sources. In Holocene archives, aspect ratio measurements are thus used to infer the broad taxonomic affinity of the burned vegetation. Since Mesozoic charcoals display similarly heterogeneous morphologies, we investigate whether there is a similar potential to infer the broad botanical affinities of Mesozoic charcoal assemblages from simple morphological metrics. We have used image analysis to analyse a range of Jurassic and Cretaceous sedimentary rocks representing different vegetation communities and depositional environments, and also to determine the range of charcoal particle morphologies which can be produced from different modern taxa under laboratory conditions. We find that modern charcoals break down into mesocharcoal particles of very variable aspect ratio, and this appears to be dependent on taxonomic position. Our analysis of fragmented laboratory-produced charcoals indicates that pteridophytes produce much more elongate particles than either conifers or non-grass angiosperms. We suggest that for charcoal assemblages that predate the evolution of grasses, high average aspect ratios may be a useful indicator of the burning of a pteridophyte-dominated flora.

Preliminary paleontologic report on cores 19A and 19B, from Russell Bank, Everglades National Park, Florida Bay

USGS Publications Warehouse

Brewster-Wingard, G. L.; Ishman, S.E.; Willard, D.A.; Edwards, L.E.; Holmes, C.W.

1997-01-01

The fauna and flora preserved in two cores, 19A and 19B, from the south side of Russell Bank (N 25 03.831', W 80 37.486') in north-central Florida Bay, Everglades National Park, Florida, record a history of environmental change over the last century. The benthic foraminifera and molluscs indicate fluctuating salinities with increasing average salinity upcore in core 19B. Shifts from low salinity (12-15 ppt) to higher average salinity (30 ppt) occurred at 70-66 cm and 24-18 cm in core 19B (approximately 1937-1940 and 1975-1980). The inverse, shifts from periods of higher average salinity to periods of lower salinity, occurred at 140 cm, 90 cm, and 42 cm (approximately 1880, 1921, and 1960). Significant changes in the molluscan fauna indicative of specific substrate types occur at 88 cm, 68 cm, and 22 cm. The lower portion of the core is dominated by a mixture of sediment and grass dwellers, the middle portion by sediment dwellers, and the upper portion of the core by grass and finally grass and algae dwellers. Changes occur in the floral assemblages in core 19A, but the significance of these changes is unclear. Three subtle shifts occur in the pollen assemblages indicating the onshore vegetation was responding to some environmental factor. Two peaks in dinocyst abundance occur in core 19A, but the composition of dinocyst assemblages remains relatively stable throughout the core. Correspondence between changes in salinity and onshore vegetation changes is consistent with results from previous cores. The pattern of increased salinity upcore is consistent with patterns seen in core T24 from the mouth of Taylor Creek and in core 6A from Bob Allen mudbank.

Intra-reach headwater fish assemblage structure

USGS Publications Warehouse

McKenna, James E.

2017-01-01

Large-scale conservation efforts can take advantage of modern large databases and regional modeling and assessment methods. However, these broad-scale efforts often assume uniform average habitat conditions and/or species assemblages within stream reaches.

Uniform functional structure across spatial scales in an intertidal benthic assemblage.

PubMed

Barnes, R S K; Hamylton, Sarah

2015-05-01

To investigate the causes of the remarkable similarity of emergent assemblage properties that has been demonstrated across disparate intertidal seagrass sites and assemblages, this study examined whether their emergent functional-group metrics are scale related by testing the null hypothesis that functional diversity and the suite of dominant functional groups in seagrass-associated macrofauna are robust structural features of such assemblages and do not vary spatially across nested scales within a 0.4 ha area. This was carried out via a lattice of 64 spatially referenced stations. Although densities of individual components were patchily dispersed across the locality, rank orders of importance of the 14 functional groups present, their overall functional diversity and evenness, and the proportions of the total individuals contained within each showed, in contrast, statistically significant spatial uniformity, even at areal scales <2 m(2). Analysis of the proportional importance of the functional groups in their geospatial context also revealed weaker than expected levels of spatial autocorrelation, and then only at the smaller scales and amongst the most dominant groups, and only a small number of negative correlations occurred between the proportional importances of the individual groups. In effect, such patterning was a surface veneer overlying remarkable stability of assemblage functional composition across all spatial scales. Although assemblage species composition is known to be homogeneous in some soft-sediment marine systems over equivalent scales, this combination of patchy individual components yet basically constant functional-group structure seems as yet unreported. Copyright © 2015 Elsevier Ltd. All rights reserved.

Benthic macroinvertebrate assemblages and their relations with environmental variables in the Sacramento and San Joaquin River drainages, California, 1993-1997

USGS Publications Warehouse

Brown, Larry R.; May, Jason T.

2000-01-01

Data were collected in the San Joaquin and Sacramento river drainages to evaluate associations between macroinvertebrate assemblages and environmental variables as part of the National Water-Quality Assessment Program of the U.S. Geological Survey. Samples were collected at 53 sites from 1993 to 1995 in the San Joaquin River drainage and in 1996 and 1997 in the Sacramento River drainage. Macroinvertebrates were collected from riffles or from large woody debris (snags) when riffles were absent. Macroinvertebrate taxa were aggregated to the family (or higher) level of taxonomic organization, resulting in 81 taxa for analyses. Only the 50 most common taxa were used for two-way indicator species analysis (TWINSPAN) and canonical correspondence analysis. TWINSPAN analysis defined four groups of riffle samples and four groups of snag samples based on macroinvertebrate assemblages. Analysis of variance identified differences in environmental and biotic characteristics of the groups. These results combined with the results of canonical correspondence analysis indicated that patterns in riffle sample assemblage structure were highly correlated with a gradient in physical and chemical conditions associated with elevation. The results also suggested that flow regulation associated with large storage reservoirs has negative effects on the total number of taxa and density of macroinvertebrates below foothill dams. Analysis of the snag samples showed that, although elevation remained a significant variable, mean dominant substrate size, gradient, specific conductance, water temperature, percentage of the basin in agricultural land use, and percentage of the basin in combined agricultural and urban land uses were more important factors in explaining assemblage structure. Macroinvertebrate assemblages on snags may be useful in family level bioassessments of environmental conditions in valley floor habitats. In the Sierra Nevada and its foothills, the strong influence of elevation made it difficult to attribute differences in macroinvertebrate assemblage structure among sites to specific environmental conditions. Additional work is needed in the foothills and Sierra Nevada to better define macroinvertebrate assemblages and their relations to environmental variables.

Associations of Dragonflies (Odonata) to Habitat Variables within the Maltese Islands: A Spatio-Temporal Approach

PubMed Central

Balzan, Mario V.

2012-01-01

Relatively little information is available on environmental associations and the conservation of Odonata in the Maltese Islands. Aquatic habitats are normally spatio-temporally restricted, often located within predominantly rural landscapes, and are thereby susceptible to farmland water management practices, which may create additional pressure on water resources. This study investigates how odonate assemblage structure and diversity are associated with habitat variables of local breeding habitats and the surrounding agricultural landscapes. Standardized survey methodology for adult Odonata involved periodical counts over selected water-bodies (valley systems, semi-natural ponds, constructed agricultural reservoirs). Habitat variables relating to the type of water body, the floristic and physiognomic characteristics of vegetation, and the composition of the surrounding landscape, were studied and analyzed through a multivariate approach. Overall, odonate diversity was associated with a range of factors across multiple spatial scales, and was found to vary with time. Lentic water-bodies are probably of high conservation value, given that larval stages were mainly associated with this habitat category, and that all species were recorded in the adult stage in this habitat type. Comparatively, lentic and lotic seminatural waterbodies were more diverse than agricultural reservoirs and brackish habitats. Overall, different odonate groups were associated with different vegetation life-forms and height categories. The presence of the great reed, Arundo donax L., an invasive alien species that forms dense stands along several water-bodies within the Islands, seems to influence the abundance and/or occurrence of a number of species. At the landscape scale, roads and other ecologically disturbed ground, surface water-bodies, and landscape diversity were associated with particular components of the odonate assemblages. Findings from this study have several implications for the use of Odonata as biological indicators, and for current trends with respect to odonate diversity conservation within the Maltese Islands. PMID:23427906

Associations of dragonflies (Odonata) to habitat variables within the Maltese Islands: a spatio-temporal approach.

PubMed

Balzan, Mario V

2012-01-01

Relatively little information is available on environmental associations and the conservation of Odonata in the Maltese Islands. Aquatic habitats are normally spatio-temporally restricted, often located within predominantly rural landscapes, and are thereby susceptible to farmland water management practices, which may create additional pressure on water resources. This study investigates how odonate assemblage structure and diversity are associated with habitat variables of local breeding habitats and the surrounding agricultural landscapes. Standardized survey methodology for adult Odonata involved periodical counts over selected water-bodies (valley systems, semi-natural ponds, constructed agricultural reservoirs). Habitat variables relating to the type of water body, the floristic and physiognomic characteristics of vegetation, and the composition of the surrounding landscape, were studied and analyzed through a multivariate approach. Overall, odonate diversity was associated with a range of factors across multiple spatial scales, and was found to vary with time. Lentic water-bodies are probably of high conservation value, given that larval stages were mainly associated with this habitat category, and that all species were recorded in the adult stage in this habitat type. Comparatively, lentic and lotic seminatural waterbodies were more diverse than agricultural reservoirs and brackish habitats. Overall, different odonate groups were associated with different vegetation life-forms and height categories. The presence of the great reed, Arundo donax L., an invasive alien species that forms dense stands along several water-bodies within the Islands, seems to influence the abundance and/or occurrence of a number of species. At the landscape scale, roads and other ecologically disturbed ground, surface water-bodies, and landscape diversity were associated with particular components of the odonate assemblages. Findings from this study have several implications for the use of Odonata as biological indicators, and for current trends with respect to odonate diversity conservation within the Maltese Islands.

Responses of turtle assemblage to environmental gradients in the St. Croix River in Minnesota and Wisconsin, U.S.A.

Treesearch

Deahn DonnerWright; Michael A. Bozek; John R. Probst; Eric M. Anderson

1999-01-01

We investigated how environmental gradients measured along the St. Croix River in Minnesota and Wisconsin, U.S.A., influenced the turtle assemblage. Among seven species, the five most common species were generalists and had wide distributions throughout the study area. However, patterns in assemblage structure were related to environmental gradients along the river....

Rehabilitation of a debris-flow prone mountain stream in southwestern China - Strategies, effects and implications

NASA Astrophysics Data System (ADS)

Yu, Guo-an; Huang, He Qing; Wang, Zhaoyin; Brierley, Gary; Zhang, Kang

2012-01-01

SummaryRehabilitation of Shengou Creek, a small, steep mountain stream in southwestern China that is prone to debris flows, started more than 30 years ago through an integrated program of engineering applications (check dams and guiding dikes), biological measures (reforestation), and social measures (reducing human disturbance). Small and medium-sized check dams and guiding dikes were constructed on key upper and middle sections of the creek to stabilize hillslopes and channel bed. Meanwhile, Leucaena leucocephala, a drought-tolerant, fast-growing, and highly adaptive plant species, was introduced to promote vegetation recovery in the watershed. The collective community structure of tree, shrub, and herb assemblages in the artificial L. leucocephala forest, which developed after 7 years, enhanced soil structure and drastically reduced soil erosion on hillslopes. Cultivation of steep land was strictly controlled in the basin, and some inhabitants were encouraged to move from upstream areas to downstream towns to reduce disturbance. These integrated measures reduced sediment supply from both hillslopes and upstream channels, preventing sediment-related hazards. The development of natural streambed resistance structures (mainly step-pool systems) and luxuriant riparian vegetation aided channel stability, diversity of stream habitat, and ecological maintenance in the creek. These findings are compared with Jiangjia and Xiaobaini Ravines, two adjacent non-rehabilitated debris-flow streams which have climate and geomorphologic conditions similar to Shengou Creek. Habitat diversity indices, taxa richness, biodiversity, and bio-community indices are much higher in Shengou Creek relative to Jiangjia and Xiaobaini Ravines, attesting to the effectiveness of rehabilitation measures.

Body-size structure of Central Iberian mammal fauna reveals semidesertic conditions during the middle Miocene Global Cooling Event.

PubMed

Menéndez, Iris; Gómez Cano, Ana R; García Yelo, Blanca A; Domingo, Laura; Domingo, M Soledad; Cantalapiedra, Juan L; Blanco, Fernando; Hernández Fernández, Manuel

2017-01-01

We developed new quantitative palaeoclimatic inference models based on the body-size structure of mammal faunas from the Old World tropics and applied them to the Somosaguas fossil site (middle Miocene, central Iberian Peninsula). Twenty-six mammal species have been described at this site, including proboscideans, ungulates, carnivores, insectivores, lagomorphs and rodents. Our analyses were based on multivariate and bivariate regression models correlating climatic data and body-size structure of 63 modern mammal assemblages from Sub-Saharan Africa and the Indian subcontinent. The results showed an average temperature of the coldest month higher than 26°C for the Somosaguas fossil site, a mean annual thermal amplitude around 10°C, a drought length of 10 months, and an annual total precipitation greater than 200 mm per year, which are climate conditions typical of an ecotonal zone between the savanna and desert biomes. These results are congruent with the aridity peaks described over the middle Aragonian of Spain and particularly in the local biozone E, which includes Somosaguas. The aridity increase detected in this biozone is associated with the Middle Miocene Global Cooling Event. The environment of Somosaguas around 14 Ma was similar to the current environment in the Sahel region of North Africa, the Horn of Africa, the boundary area between the Kalahari and the Namib in Southern Africa, south-central Arabia, or eastern Pakistan and northwestern India. The distribution of modern vegetation in these regions follows a complex mosaic of plant communities, dominated by scattered xerophilous shrublands, semidesert grasslands, and vegetation linked to seasonal watercourses and ponds.

Body-size structure of Central Iberian mammal fauna reveals semidesertic conditions during the middle Miocene Global Cooling Event

PubMed Central

Gómez Cano, Ana R.; García Yelo, Blanca A.; Domingo, Laura; Domingo, M. Soledad; Cantalapiedra, Juan L.; Blanco, Fernando; Hernández Fernández, Manuel

2017-01-01

We developed new quantitative palaeoclimatic inference models based on the body-size structure of mammal faunas from the Old World tropics and applied them to the Somosaguas fossil site (middle Miocene, central Iberian Peninsula). Twenty-six mammal species have been described at this site, including proboscideans, ungulates, carnivores, insectivores, lagomorphs and rodents. Our analyses were based on multivariate and bivariate regression models correlating climatic data and body-size structure of 63 modern mammal assemblages from Sub-Saharan Africa and the Indian subcontinent. The results showed an average temperature of the coldest month higher than 26°C for the Somosaguas fossil site, a mean annual thermal amplitude around 10°C, a drought length of 10 months, and an annual total precipitation greater than 200 mm per year, which are climate conditions typical of an ecotonal zone between the savanna and desert biomes. These results are congruent with the aridity peaks described over the middle Aragonian of Spain and particularly in the local biozone E, which includes Somosaguas. The aridity increase detected in this biozone is associated with the Middle Miocene Global Cooling Event. The environment of Somosaguas around 14 Ma was similar to the current environment in the Sahel region of North Africa, the Horn of Africa, the boundary area between the Kalahari and the Namib in Southern Africa, south-central Arabia, or eastern Pakistan and northwestern India. The distribution of modern vegetation in these regions follows a complex mosaic of plant communities, dominated by scattered xerophilous shrublands, semidesert grasslands, and vegetation linked to seasonal watercourses and ponds. PMID:29073193

Even the smallest non-crop habitat islands could be beneficial: distribution of carabid beetles and spiders in agricultural landscape.

PubMed

Knapp, Michal; Řezáč, Milan

2015-01-01

Carabid beetles and ground-dwelling spiders inhabiting agroecosystems are beneficial organisms with a potential to control pest species. Intensification of agricultural management and reduction of areas covered by non-crop vegetation during recent decades in some areas has led to many potentially serious environmental problems including a decline in the diversity and abundance of beneficial arthropods in agricultural landscapes. This study investigated carabid beetle and spider assemblages in non-crop habitat islands of various sizes (50 to 18,000 square metres) within one large field, as well as the arable land within the field, using pitfall traps in two consecutive sampling periods (spring to early summer and peak summer). The non-crop habitat islands situated inside arable land hosted many unique ground-dwelling arthropod species that were not present within the surrounding arable land. Even the smallest non-crop habitat islands with areas of tens of square metres were inhabited by assemblages substantially different from these inhabiting arable land and thus enhanced the biodiversity of agricultural landscapes. The non-crop habitat area substantially affected the activity density, recorded species richness and recorded species composition of carabid and ground-dwelling spider assemblages; however, the effects were weakened when species specialised to non-crop habitats species were analysed separately. Interestingly, recorded species richness of spiders increased with non-crop habitat area, whereas recorded species richness of carabid beetles exhibited an opposite trend. There was substantial temporal variation in the spatial distribution of ground-dwelling arthropods, and contrasting patterns were observed for particular taxa (carabid beetles and spiders). In general, local environmental conditions (i.e., non-crop habitat island tree cover, shrub cover, grass cover and litter depth) were better determinants of arthropod assemblages than non-crop habitat island size, indicating that the creation of quite small but diversified (e.g., differing in vegetation cover) non-crop habitat islands could be the most efficient tool for the maintenance and enhancement of diversity of ground-dwelling carabids and spiders in agricultural landscapes.

Even the Smallest Non-Crop Habitat Islands Could Be Beneficial: Distribution of Carabid Beetles and Spiders in Agricultural Landscape

PubMed Central

Knapp, Michal; Řezáč, Milan

2015-01-01

Carabid beetles and ground-dwelling spiders inhabiting agroecosystems are beneficial organisms with a potential to control pest species. Intensification of agricultural management and reduction of areas covered by non-crop vegetation during recent decades in some areas has led to many potentially serious environmental problems including a decline in the diversity and abundance of beneficial arthropods in agricultural landscapes. This study investigated carabid beetle and spider assemblages in non-crop habitat islands of various sizes (50 to 18,000 square metres) within one large field, as well as the arable land within the field, using pitfall traps in two consecutive sampling periods (spring to early summer and peak summer). The non-crop habitat islands situated inside arable land hosted many unique ground-dwelling arthropod species that were not present within the surrounding arable land. Even the smallest non-crop habitat islands with areas of tens of square metres were inhabited by assemblages substantially different from these inhabiting arable land and thus enhanced the biodiversity of agricultural landscapes. The non-crop habitat area substantially affected the activity density, recorded species richness and recorded species composition of carabid and ground-dwelling spider assemblages; however, the effects were weakened when species specialised to non-crop habitats species were analysed separately. Interestingly, recorded species richness of spiders increased with non-crop habitat area, whereas recorded species richness of carabid beetles exhibited an opposite trend. There was substantial temporal variation in the spatial distribution of ground-dwelling arthropods, and contrasting patterns were observed for particular taxa (carabid beetles and spiders). In general, local environmental conditions (i.e., non-crop habitat island tree cover, shrub cover, grass cover and litter depth) were better determinants of arthropod assemblages than non-crop habitat island size, indicating that the creation of quite small but diversified (e.g., differing in vegetation cover) non-crop habitat islands could be the most efficient tool for the maintenance and enhancement of diversity of ground-dwelling carabids and spiders in agricultural landscapes. PMID:25859850

Groundwater declines are linked to changes in Great Plains stream fish assemblages

USGS Publications Warehouse

Prekins, Joshuah S.; Gido, Keith B.; Falke, Jeffrey A.; Fausch, Kurt D.; Crockett, Harry; Johnson, Eric R.; Sanderson, John

2017-01-01

Groundwater pumping for agriculture is a major driver causing declines of global freshwater ecosystems, yet the ecological consequences for stream fish assemblages are rarely quantified. We combined retrospective (1950–2010) and prospective (2011–2060) modeling approaches within a multiscale framework to predict change in Great Plains stream fish assemblages associated with groundwater pumping from the United States High Plains Aquifer. We modeled the relationship between the length of stream receiving water from the High Plains Aquifer and the occurrence of fishes characteristic of small and large streams in the western Great Plains at a regional scale and for six subwatersheds nested within the region. Water development at the regional scale was associated with construction of 154 barriers that fragment stream habitats, increased depth to groundwater and loss of 558 km of stream, and transformation of fish assemblage structure from dominance by large-stream to small-stream fishes. Scaling down to subwatersheds revealed consistent transformations in fish assemblage structure among western subwatersheds with increasing depths to groundwater. Although transformations occurred in the absence of barriers, barriers along mainstem rivers isolate depauperate western fish assemblages from relatively intact eastern fish assemblages. Projections to 2060 indicate loss of an additional 286 km of stream across the region, as well as continued replacement of large-stream fishes by small-stream fishes where groundwater pumping has increased depth to groundwater. Our work illustrates the shrinking of streams and homogenization of Great Plains stream fish assemblages related to groundwater pumping, and we predict similar transformations worldwide where local and regional aquifer depletions occur.

Groundwater declines are linked to changes in Great Plains stream fish assemblages.

PubMed

Perkin, Joshuah S; Gido, Keith B; Falke, Jeffrey A; Fausch, Kurt D; Crockett, Harry; Johnson, Eric R; Sanderson, John

2017-07-11

Groundwater pumping for agriculture is a major driver causing declines of global freshwater ecosystems, yet the ecological consequences for stream fish assemblages are rarely quantified. We combined retrospective (1950-2010) and prospective (2011-2060) modeling approaches within a multiscale framework to predict change in Great Plains stream fish assemblages associated with groundwater pumping from the United States High Plains Aquifer. We modeled the relationship between the length of stream receiving water from the High Plains Aquifer and the occurrence of fishes characteristic of small and large streams in the western Great Plains at a regional scale and for six subwatersheds nested within the region. Water development at the regional scale was associated with construction of 154 barriers that fragment stream habitats, increased depth to groundwater and loss of 558 km of stream, and transformation of fish assemblage structure from dominance by large-stream to small-stream fishes. Scaling down to subwatersheds revealed consistent transformations in fish assemblage structure among western subwatersheds with increasing depths to groundwater. Although transformations occurred in the absence of barriers, barriers along mainstem rivers isolate depauperate western fish assemblages from relatively intact eastern fish assemblages. Projections to 2060 indicate loss of an additional 286 km of stream across the region, as well as continued replacement of large-stream fishes by small-stream fishes where groundwater pumping has increased depth to groundwater. Our work illustrates the shrinking of streams and homogenization of Great Plains stream fish assemblages related to groundwater pumping, and we predict similar transformations worldwide where local and regional aquifer depletions occur.

Groundwater declines are linked to changes in Great Plains stream fish assemblages

PubMed Central

Perkin, Joshuah S.; Gido, Keith B.; Falke, Jeffrey A.; Fausch, Kurt D.; Crockett, Harry; Johnson, Eric R.; Sanderson, John

2017-01-01

Groundwater pumping for agriculture is a major driver causing declines of global freshwater ecosystems, yet the ecological consequences for stream fish assemblages are rarely quantified. We combined retrospective (1950–2010) and prospective (2011–2060) modeling approaches within a multiscale framework to predict change in Great Plains stream fish assemblages associated with groundwater pumping from the United States High Plains Aquifer. We modeled the relationship between the length of stream receiving water from the High Plains Aquifer and the occurrence of fishes characteristic of small and large streams in the western Great Plains at a regional scale and for six subwatersheds nested within the region. Water development at the regional scale was associated with construction of 154 barriers that fragment stream habitats, increased depth to groundwater and loss of 558 km of stream, and transformation of fish assemblage structure from dominance by large-stream to small-stream fishes. Scaling down to subwatersheds revealed consistent transformations in fish assemblage structure among western subwatersheds with increasing depths to groundwater. Although transformations occurred in the absence of barriers, barriers along mainstem rivers isolate depauperate western fish assemblages from relatively intact eastern fish assemblages. Projections to 2060 indicate loss of an additional 286 km of stream across the region, as well as continued replacement of large-stream fishes by small-stream fishes where groundwater pumping has increased depth to groundwater. Our work illustrates the shrinking of streams and homogenization of Great Plains stream fish assemblages related to groundwater pumping, and we predict similar transformations worldwide where local and regional aquifer depletions occur. PMID:28652354

The influence of aridity and fire on Holocene prairie communities in the eastern Prairie Peninsula

USGS Publications Warehouse

Nelson, D.M.; Feng, S.H.; Grimm, E.C.; Curry, B. Brandon; Slate, J.E.

2006-01-01

The role of climate and fire in the development, maintenance, and species composition of prairie in the eastern axis of the tallgrass Prairie Peninsula intrigued early North American ecologists. However, evaluation of the long-standing hypotheses about the region's environmental history has been hampered by the scarcity of paleorecords. We conducted multiproxy analyses on early and middle Holocene sediments from two Illinois, USA, lakes to assess long-term climatic, vegetational, and fire variability in the region. Sediment mineral composition, carbonate ??18O, ostracode assemblages, and diatom assemblages were integrated to infer fluctuations in moisture availability. Pollen and charcoal ??13C were used to reconstruct vegetation composition, and charcoal influx was used to reconstruct fire. Results indicate that fire-sensitive trees (e.g., Ulmus, Ostrya, Fraxinus, and Acer saccharum) declined and prairie taxa expanded with increased aridity from 10 000 yr BP to 8500 yr BP. Between ???8500 yr BP and ???6200 yr BP, aridity declined, and prairie coexisted with fire-sensitive and fire-tolerant (e.g., Quercus and Carya) trees. After ???6200 yr BP, prairie taxa became dominant, although aridity was not more severe than it was around 8500 yr BP. Along with aridity, fire appears to have played an important role in the establishment and maintenance of prairie communities in the eastern Prairie Peninsula, consistent with the speculations of the early ecologists. Comparison of our data with results from elsewhere in the North American midcontinent indicates that spatial heterogeneity is a characteristic feature of climatic and vegetational variations on millennial time scales. ?? 2006 by the Ecological Society of America.

Benthic assemblages on artificial reefs in the northwestern Adriatic Sea: does structure type and age matter?

PubMed

Ponti, Massimo; Fava, Federica; Perlini, Rossella Angela; Giovanardi, Otello; Abbiati, Marco

2015-03-01

The use of artificial reefs is on the rise worldwide. While their fish aggregating effects are well known, the epibenthic assemblages have been poorly investigated. Two types of artificial reefs (pyramids of concrete slabs and bundles of concrete tubes) have been deployed out of the Po River Delta in 2006 and 2010. The epibenthic assemblages were investigated in 2009 and 2012. Benthic assemblages on both structure typologies were dominated by species tolerating high sedimentation rates. Dissimilarities were found among assemblages with different ages, and, in less extend, between reef typologies. Colonisation by Mytilus galloprovincialis and other major space occupiers did not follow a clear succession pattern and was not affected by reef typology. Species colonisation was likely driven by variability in environmental conditions and recruitment processes rather than by reef typology. This study suggests that environmental features of the deployment sites should be carefully considered in planning and designing artificial reefs, especially in eutrophic and turbid coastal waters, exposed to high river loads. Copyright © 2014 Elsevier Ltd. All rights reserved.

Is the nestedness of metazoan parasite assemblages of marine fishes from the southeastern Pacific coast a pattern associated with the geographical distributional range of the host?

PubMed

González, M T; Oliva, M E

2009-04-01

Nested structure is a pattern originally described in island biogeography to characterize how a set of species is distributed among a set of islands. In parasite communities, nestedness has been intensively studied among individual fish from a locality. However, nested patterns among parasite assemblages from different host populations (localities) have scarcely been investigated. We recorded the occurrence of parasites in 9 fish species widely distributed along the southeastern Pacific coast to determine whether the ecto- and endoparasite assemblages of marine fishes show a nested structure associated with host distributional range. Nestedness was tested using Brualdi-Sanderson index of discrepancy (BR); and 5 null models incorporated in a 'Nestedness' programme (Ulrich, 2006). The ecto- and endoparasite richness do not show similar patterns of latitudinal gradients among fish hosts, with 33-66% of analysed ectoparasite assemblages, and 25-75% of endoparasite assemblages showing nested structures through the host distributional range. For ectoparasites, species richness gradients and nested structure (when present) might be associated with decreased host densities or could reflect negative environmental conditions in the distributional border of the host species, whereas for endoparasites might be caused by geographical breaks of prey or changes in prey availability (intermediate hosts). The sampled extension of the distributional range of the host species, as well as the lack of specificity of some parasites, could influence the detection of nestedness.

Temporal distribution of intertidal macrozoobenthic assemblages in a Nanozostera noltii-dominated area (Lagoon of Venice).

PubMed

Tagliapietra, D; Pessa, G; Cornello, M; Zitelli, A; Magni, P

2016-03-01

We describe the temporal distribution of intertidal macrozoobenthic assemblages in a small marsh pond of the Lagoon of Venice colonized by the seagrass Nanozostera noltii (Hornemman) Tomlinson et Posluzny. Three stations ranging in the degree of N. noltii cover were selected about 100 m apart and sampled 9 times at regular intervals from March 1996 to March 1997. We applied the concepts of resistance and resilience to "natural stress" (e.g. extent of protection from seagrass meadows, exposure of macrozoobenthic assemblages to high temperatures in summer) with the aim to assess the stability of a community along a gradient of seagrass coverage. Results showed that the most structured and taxa-rich macrozoobenthic assemblage occurred at the station covered by a continuous stand of N. noltii, where permanent taxa (i.e. found in 100% of samples) were almost double than those found at the other stations. During the annual cycle, the macrozoobenthic assemblages showed a cyclical pattern, with temporal fluctuations increasing as they moved further away from the seagrass beds. We propose the role of N. noltii offering structural complexity and stability as the more probable explanation to the observed differences between stations in the intertidal assemblages. Copyright © 2015 Elsevier Ltd. All rights reserved.

Changes in mesophotic reef fish assemblages along depth and geographical gradients in the Northwestern Hawaiian Islands

NASA Astrophysics Data System (ADS)

Fukunaga, Atsuko; Kosaki, Randall K.; Wagner, Daniel

2017-09-01

Mesophotic coral ecosystems (MCEs) extend from 30 to 150 m in depth and support diverse communities of marine organisms. We investigated changes in the structure of mesophotic reef fish assemblages (27-100 m) in the Northwestern Hawaiian Islands (NWHI) along depth and geographical gradients using open- and closed-circuit trimix diving. There were clear changes in the assemblage structure from the southeastern to the northwestern end of the NWHI and from shallow to deep waters. Interactive effects of depth and location were also detected. MCEs in the NWHI can be treated as three regions: southeastern and mid regions primarily separated by the presence and absence, respectively, of the introduced species Lutjanus kasmira, and a northwestern region where fish assemblages are largely composed of endemic species. These spatial patterns may be explained, at least in part, by differences in temperature among the regions.

Influence of Late Quaternary depositional environments on the structure of nannofossil assemblages in the Titanic area (northwestern Atlantic)

NASA Astrophysics Data System (ADS)

Dmitrenko, O. B.

2012-02-01

The nannofosssil assemblages have been analyzed in five cores taken from the Titanic area of the northwestern Atlantic (˜41°-42° N, ˜47°-50° W, water depths >3500 m) during cruises 41 and 43 of the R/V Akademik Mstislav Keldysh in 1998 and 2000. They correlate the host sediments with the upper Pleistocene-Holocene Emiliania huxleyi zone. The changes in the structure of the nannofossil assemblages and the lithological characteristics such as the content of biogenic CaCO3, the abundance of ice-rafted debris, and the grain-size composition were used for the high-resolution stratigraphy of sections with defining marine isotopic stages 1-3 of the last 24 kyr. A characteristic feature of the nannofossil assemblages from this area is their enrichment with the cold-resistant species Coccolthus pelagicus during the warm climatic stages and the lack of allochthonous coccolitophorid remains.

Does climate influence assemblages of anurans and lizards in a coastal area of north-eastern Brazil?

NASA Astrophysics Data System (ADS)

Rodrigues, João Fabrício Mota; Borges-Leite, Maria Juliana; Borges-Nojosa, Diva Maria

2016-11-01

Environmental factors influence diverse assemblage features such as species abundances, richness, and nestedness. Amphibians and reptiles play important roles in terrestrial ecosystems, but there is still a lack of information about the assemblages of these animals in many regions. In this study, we aimed to understand how environmental factors influence the anurans and lizards assemblages from São Gonçalo do Amarante, Ceará, Brazil. Herpetofauna samplings were performed monthly in São Gonçalo do Amarante from January 2008 to May 2009, excluding April 2008. We sampled animals (anurans and lizards) using pitfall traps and active searches. The abundance and richness of lizards were positively related to temperature and negatively related to precipitation. Anuran assemblage was not influenced by precipitation, but its abundance was negatively influenced by temperature. Temperature generated a nested pattern in the lizard assemblage, but precipitation did not produce this pattern in anurans. Finally, our results reinforce the importance of environmental factors, mainly temperature, in structuring assemblages of anurans and lizards.

Potential climatic refugia in semi-arid, temperate mountains: plant and arthropod assemblages associated with rock glaciers, talus slopes, and their forefield wetlands, Sierra Nevada, California, USA

Treesearch

Constance I. Millar; Robert D. Westfall; Angela Evenden; Jeffrey G. Holmquist; Jutta Schmidt-Gengenbach; Rebecca S. Franklin; Jan Nachlinger; Diane L. Delany

2015-01-01

Unique thermal and hydrologic regimes of rock-glacier and periglacial talus environments support little-studied mountain ecosystems. We report the first studies of vascular plant and arthropod diversity for these habitats in the central Sierra Nevada, California, USA. Surfaces of active rock glaciers develop scattered islands of soil that provide habitat for vegetation...

50,000 years of vegetation and climate history on the Colorado Plateau, Utah and Arizona, USA

USGS Publications Warehouse

Coats, Larry L.; Cole, Kenneth L.; Mead, Jim I.

2008-01-01

Sixty packrat middens were collected in Canyonlands and Grand Canyon National Parks, and these series include sites north of areas that produced previous detailed series from the Colorado Plateau. The exceptionally long time series obtained from each of three sites (> 48,000 14C yr BP to present) include some of the oldest middens yet discovered. Most middens contain a typical late-Wisconsinan glaciation mixture of mesic and xeric taxa, evidence that plant species responded to climate change by range adjustments of elevational distribution based on individual criteria. Differences in elevational range from today for trees and shrubs ranged from no apparent change to as much as 1200 m difference. The oldest middens from Canyonlands NP, however, differ in containing strictly xeric assemblages, including middens incorporating needles of Arizona single-leaf pinyon, far north of its current distribution. Similar-aged middens from the eastern end of Grand Canyon NP contain plants more typical of glacial climates, but also contain fossils of one-seed juniper near its current northern limit in Arizona. Holocene middens reveal the development of modern vegetation assemblages on the Colorado Plateau, recording departures of mesic taxa from low elevation sites, and the arrival of modern dominant components much later.

Reconstructing Grazer Assemblages for Protected Area Restoration

PubMed Central

Venter, Jan A.; Prins, Herbert H. T.; Balfour, David A.; Slotow, Rob

2014-01-01

Protected area management agencies often struggle to reliably reconstruct grazer assemblages due to a lack of historical distribution data for their regions. Wrong predictions of grazing assemblages could potentially affect biodiversity negatively. The objective of the study was to determine how well grazing herbivores have become established since introduction to the Mkambati Nature Reserve, South Africa, how this was influenced by facilitation and competition, and how indigenous grazer assemblages can best be predicted for effective ecological restoration. Population trends of several grazing species were investigated in in order to determine how well they have become established since introduction. Five different conceivable grazing assemblages reflecting a range of approaches that are commonly encountered during conservation planning and management decision making were assessed. Species packing was used to predict whether facilitation, competition or co-existence were more likely to occur, and the species packing of the different assemblages were assessed using ANCOVA. Reconstructing a species assemblage using biogeographic and biological information provides the opportunity for a grazer assemblage that allows for facilitatory effects, which in turn leads to an ecosystem that is able to maintain its grazer assemblage structure. The strength of this approach lies in the ability to overcome the problem of depauperate grazer assemblages, resulting from a lack of historical data, by using biogeographical and biological processes, to assist in more effectively reconstructing grazer assemblages. Adaptive management of grazer assemblage restoration through reintroduction, using this approach would further mitigate management risks. PMID:24603663

Spatial and temporal distribution of benthic macroinvertebrates in a Southeastern Brazilian river.

PubMed

Silveira, M P; Buss, D F; Nessimian, J L; Baptista, D F

2006-05-01

Benthic macroinvertebrate assemblages are structured according to physical and chemical parameters that define microhabitats, including food supply, shelter to escape predators, and other biological parameters that influence reproductive success. The aim of this study is to investigate spatial and temporal distribution of macroinvertebrate assemblages at the Macaé river basin, in Rio de Janeiro state, Southeastern Brazil. According to the "Habitat Assessment Field Data Sheet--High Gradient Streams" (Barbour et al., 1999), the five sampling sites are considered as a reference condition. Despite the differences in hydrological parameters (mean width, depth and discharge) among sites, the physicochemical parameters and functional feeding groups' general structure were similar, except for the less impacted area, which showed more shredders. According to the Detrended Correspondence Analysis based on substrates, there is a clear distinction between pool and riffle assemblages. In fact, the riffle litter substrate had higher taxa in terms of richness and abundance, but the pool litter substrate had the greatest number of exclusive taxa. A Cluster Analysis based on sampling sites data showed that temporal variation was the main factor in structuring macroinvertebrate assemblages in the studied habitats.

Biodiversity in canopy-forming algae: Structure and spatial variability of the Mediterranean Cystoseira assemblages

NASA Astrophysics Data System (ADS)

Piazzi, L.; Bonaviri, C.; Castelli, A.; Ceccherelli, G.; Costa, G.; Curini-Galletti, M.; Langeneck, J.; Manconi, R.; Montefalcone, M.; Pipitone, C.; Rosso, A.; Pinna, S.

2018-07-01

In the Mediterranean Sea, Cystoseira species are the most important canopy-forming algae in shallow rocky bottoms, hosting high biodiverse sessile and mobile communities. A large-scale study has been carried out to investigate the structure of the Cystoseira-dominated assemblages at different spatial scales and to test the hypotheses that alpha and beta diversity of the assemblages, the abundance and the structure of epiphytic macroalgae, epilithic macroalgae, sessile macroinvertebrates and mobile macroinvertebrates associated to Cystoseira beds changed among scales. A hierarchical sampling design in a total of five sites across the Mediterranean Sea (Croatia, Montenegro, Sardinia, Tuscany and Balearic Islands) was used. A total of 597 taxa associated to Cystoseira beds were identified with a mean number per sample ranging between 141.1 ± 6.6 (Tuscany) and 173.9 ± 8.5(Sardinia). A high variability at small (among samples) and large (among sites) scale was generally highlighted, but the studied assemblages showed different patterns of spatial variability. The relative importance of the different scales of spatial variability should be considered to optimize sampling designs and propose monitoring plans of this habitat.

Biological structure and dynamics of fish assemblages in tributaries of eastern Lake Ontario

USGS Publications Warehouse

McKenna, James E.; Munawar, M.

2003-01-01

Interest in effective management of Great Lakes natural resources and restoration of native populations has stimulated interest in the conditions and ecological role of tributaries in the Great Lakes ecosystem. Rivers of Lake Ontario's eastern basin provide an excellent opportunity to examine important tributaries and their relationship to Lake Ontario. This paper reports on the results of an investigation of fish assemblage structure in lower reaches of the Salmon and Oswego Rivers and at their interfaces with Lake Ontario. These two systems represent conditions near the end points on a continuum from highly disturbed to pristine. They are also of great interest to resource managers for their important fisheries and other economic values. The objective was to identify distinct fish assemblages within these systems and relate their characteristics to biotic and abiotic conditions in an attempt to determine factors responsible for structuring and maintaining those species assemblages. This information is intended to provide baseline information for monitoring the status of these rivers and coastal systems and to aid in the development of models of ecological health.

Evolution of fracture and fault-controlled fluid pathways in carbonates of the Albanides fold-thrust belt

USGS Publications Warehouse

Graham, Wall B.R.; Girbacea, R.; Mesonjesi, A.; Aydin, A.

2006-01-01

The process of fracture and fault formation in carbonates of the Albanides fold-thrust belt has been systematically documented using hierarchical development of structural elements from hand sample, outcrop, and geologic-map scales. The function of fractures and faults in fluid migration was elucidated using calcite cement and bitumen in these structures as a paleoflow indicator. Two prefolding pressure-solution and vein assemblages were identified: an overburden assemblage and a remote tectonic stress assemblage. Sheared layer-parallel pressure-solution surfaces of the overburden assemblage define mechanical layers. Shearing of mechanical layers associated with folding resulted in the formation of a series of folding assemblage fractures at different orientations, depending on the slip direction of individual mechanical layers. Prefolding- and folding-related fracture assemblages together formed fragmentation zones in mechanical layers and are the sites of incipient fault localization. Further deformation along these sites was accommodated by rotation and translation of fragmented rock, which formed breccia and facilitated fault offset across multiple mechanical layers. Strike-slip faults formed by this process are organized in two sets in an apparent conjugate pattern. Calcite cement and bitumen that accumulated along fractures and faults are evidence of localized fluid flow along fault zones. By systematic identification of fractures and faults, their evolution, and their fluid and bitumen contents, along with subsurface core and well-log data, we identify northeast-southwest-trending strike-slip faults and the associated structures as dominant fluid pathways in the Albanides fold-thrust belt. Copyright ?? 2006. The American Association of Petroleum Geologists. All rights reserved.

Diversity and abundance of invertebrate epifaunal assemblages associated with gorgonians are driven by colony attributes

NASA Astrophysics Data System (ADS)

Cúrdia, João; Carvalho, Susana; Pereira, Fábio; Guerra-García, José Manuel; Santos, Miguel N.; Cunha, Marina R.

2015-06-01

The present study aimed to explicitly quantify the link between the attributes of shallow-water gorgonian colonies (Octocorallia: Alcyonacea) and the ecological patterns of associated non-colonial epifaunal invertebrates. Based on multiple regression analysis, we tested the contribution of several attributes (colony height, width, and area, fractal dimension as a measure of colony complexity, lacunarity as a measure of the heterogeneity, and "colonial" epibiont cover) to abundance and taxonomic richness of associated assemblages. The results highlight the variation in the response of epifaunal assemblages to the gorgonian colony characteristics. The nature and intensity of the relationships were gorgonian species-dependent and varied from one taxonomic group to another. For both gorgonian species analyzed, the strongest predictor of species richness and abundance of the epifaunal assemblages was "colonial" epibiont cover, possibly due to a trophic effect (direct or indirect enhancement of food availability) combined with the surface available for colonization (species-area effect). Although structural complexity is usually indicated as the main driver for rich and abundant coral-associated assemblages, no significant relationship was observed between fractal dimension and the community descriptors; lacunarity, which reflects the sizes of the inter-branch spaces, was only linked to taxonomic richness in the assemblages associated with Leptogorgia lusitanica. The validity of the paradigm that structural complexity enhances biodiversity may be scale-dependent. In the case of gorgonians, the effect of complexity at the "garden" level may be more relevant than at the individual colony level. This reinforces the need for the conservation of gorgonian aggregation areas as a whole in order to preserve host diversity and size structure.

Composition and daytime vertical distribution of the ichthyoplankton assemblage in the Central Cantabrian Sea shelf, during summer: An Eulerian study

NASA Astrophysics Data System (ADS)

Rodriguez, J. M.; Gonzalez-Pola, C.; Lopez-Urrutia, A.; Nogueira, E.

2011-09-01

During summer, wind driven coastal upwelling dominates in the Central Cantabrian Sea (southern Bay of Biscay). Nevertheless, atmospheric forcing is highly variable and wind pulses may cause noticeable and fast hydrographic responses in the shelf region. In this paper, the composition and vertical distribution of the summer ichthyoplankton assemblage during the daytime at a fixed station, located on the Central Cantabrian Sea shelf, are documented. Also, the impact of a short-time scale hydrographic event on the abundance and structure of the larval fish assemblage is examined. Significant small-scale temporal hydrographic variability was observed. Currents showed changes in speed and direction and significant changes in thermocline depth were also observed. A total of 34 taxa of fish larvae were identified. Engraulis encrasicolus eggs and larvae of the shelf-dwelling species Trachurus trachurus, Capros aper and E. encrasicolus dominated the ichthyoplankton assemblage. The distribution of E. encrasicolus eggs and fish larvae was vertically structured. E. encrasicolus egg concentration increased exponentially towards the surface. Fish larvae showed a subsurface peak of concentration and their vertical distribution was not conditioned by thermocline depths. The short term hydrographic event did not affect the vertical distribution of fish larvae but it accounted for significant temporal changes in larval fish assemblage structure and abundance. Results suggest that temperature and light intensity are important factors in the vertical distribution of fish larvae. They also indicate that the temporal monitoring of the larval fish assemblage in this region requires multiple sampling sites.

FISH ASSEMBLAGES AS INDICATORS OF LAKE SUPERIOR COASTAL WETLAND CONDITION

EPA Science Inventory

Fish assemblages associated with coastal wetlands in Lake Superior are poorly described. Understanding the environmental factors structuring the biota in these habitats is essential to developing robust indicators of their condition. To identify key environmental influences struc...

ANALYSIS OF LOTIC MACROINVERTEBRATE ASSEMBLAGES IN CALIFORNIA'S CENTRAL VALLEY

EPA Science Inventory

Using multivariate and cluster analyses, we examined the relaitonships between chemical and physical characteristics and macroinvertebrate assemblages at sites sampled by R-EMAP in California's Central Valley. By contrasting results where community structure was summarized as met...

Changes in habitat complexity negatively affect diverse gastropod assemblages in coralline algal turf.

PubMed

Kelaher, B P

2003-05-01

The physical structure of a habitat generally has a strong influence on the diversity and abundance of associated organisms. I investigated the role of coralline algal turf structure in determining spatial variation of gastropod assemblages at different tidal heights of a rocky shore near Sydney, Australia. The structural characteristics of algal turf tested were frond density (or structural complexity) and frond length (the vertical scale over which structural complexity was measured). This definition of structural complexity assumes that complexity of the habitat increases with increasing frond density. While frond length was unrelated to gastropod community structure, I found significant correlations between density of fronds and multivariate and univariate measures of gastropod assemblages, indicating the importance of structural complexity. In contrast to previous studies, here there were negative relationships between the density of fronds and the richness and abundance of gastropods. Artificial habitat mimics were used to manipulate the density of fronds to test the hypothesis that increasing algal structural complexity decreases the richness and abundance of gastropods. As predicted, there were significantly more species of gastropods in loosely packed than in tightly packed turf at both low- and mid-shore levels. Despite large differences between gastropod assemblages at different tidal heights, the direction and magnitude of these negative effects were similar at low- and mid-shore levels and, therefore, relatively independent of local environmental conditions. These novel results extend our previous understanding of the ecological effects of habitat structure because they demonstrate possible limitations of commonly used definitions of structural complexity, as well as distinct upper thresholds in the relationship between structural complexity and faunal species richness.

Six centuries of anthropogenic forest change on a Polynesian high island: Archaeological charcoal records from the Marquesas Islands

NASA Astrophysics Data System (ADS)

Huebert, Jennifer M.; Allen, Melinda S.

2016-04-01

It is widely recognised that Polynesian settlers developed central Pacific islands into productive economic landscapes, but the character and tempo of these transformations are poorly understood. Archaeological wood charcoal assemblages are uniquely suited to inform on landscape change, especially when the principal food crops were arboreal. We use a large archaeological charcoal collection, drawn from numerous geographically and functionally varied contexts, to develop a multi-scalar vegetation history of Marquesas Islands' lowland forests. Our aims were to: 1) reveal historical patterns of plant biogeography, including introductions by Polynesian settlers; 2) detail the nature and timing of anthropogenic impacts on native Marquesan forests; and 3) track the emergence of economically productive arboreal landscapes. A collection of 6510 fragments identified to 59 taxa inform on a ∼600-year sequence of human activities. The earliest samples indicate rich forests were encountered by human colonists, comprised of a mix of dicotyledonous hardwood species and woody monocots. These included members of two now-extinct Sapotaceae genera, Planchonella and cf. Sideroxylon, along with Allophylus, a Sapindaceae apparently extirpated from Nuku Hiva. Two important coastal trees, Calophyllum inophyllum and Thespesia populnea, also appear to be indigenous. Polynesian impacts were rapid and widespread, irrevocably altering the indigenous vegetation and disrupting native ecosystems. Samples from later occupations document on-going modifications to lowland vegetation communities. This included inter-valley variability in the timing of transformations and the development of mosaic formations, comprised of native forest interspersed with areas of cultivation and habitation. By 1650 CE, low and mid-elevation vegetation was extensively remodelled, as anthropogenic forests of Artocarpus altilis (breadfruit), Inocarpus fagifer (Tahitian chestnut), and other economic species became widely established and cultivation intensified. Mimicking natural forests, these arboricultural systems helped protect the island's fragile soils and landscapes from recurring climate extremes. Intriguingly, some translocated taxa, including Tahitian chestnut, Casuarina equisetifolia (ironwood), and Morinda citrifolia (Indian mulberry), may have been post-settlement introductions. This analysis demonstrates the potential of archaeological wood charcoal assemblages to inform on Pacific Island vegetation histories, anthropogenic processes, and the evolution of arboricultural economies.

Oligocene to Miocene terrestrial climate change and the demise of forests on Wilkes Land, East Antarctica

NASA Astrophysics Data System (ADS)

Salzmann, Ulrich; Strother, Stephanie; Sangiorgi, Francesca; Bijl, Peter; Pross, Joerg; Woodward, John; Escutia, Carlota; Brinkhuis, Henk

2016-04-01

The question whether Cenozoic climate was warm enough to support a substantial vegetation cover on the Antarctic continent is of great significance to the ongoing controversial debate on the dynamic behaviour of Antarctic land ice during the transition from a greenhouse to an icehouse world. Here we present palynological results from an Oligocene to Miocene sediment record provided by the Integrated Ocean Drilling Program Expedition 318 to the Wilkes Land margin (East Antarctica). The Oligocene assemblages (33.9-23 Ma) are dominated by pollen and spores from temperate forest and sub-Antarctic shrub vegetation inhabiting different altitudinal zones. These include a lowland cold temperate forest with Dacrydium and Lagarostrobos (both common in southern forests of New Zealand and Tasmania today) and a high altitude tundra shrubland comprising Microcachrys, Nothofagus (southern beech) and Podocarpaceae conifers. A decline in pollen percentages of Dacrydium and Lagarostrobos and absence of Proteaceae indicate climate cooling during the late Oligocene (~25-23 Ma). However, the continuous presence of Lagarostrobos suggests that the full transition to a tundra environment had not yet occurred and climate on Wilkes Land during the late Oligocene was still warm enough to support forest vegetation in sheltered areas. Temperature reconstructions derived from the fossil pollen assemblages using the Coexistence Approach suggest mean annual temperatures (MATs) between 6.7-13.7°C during the early Oligocene and a drop of minimum MATs to 5.8°C in the late Oligocene. Pollen of "unambiguous" forest indicators, such as Lagarostrobos, are absent in the Miocene sediment record (16.2 -12.5 Ma) but temperatures were still high enough (minimum MATs > 5°C) to sustain a woody sub-Antarctic vegetation under partially ice-free conditions. Wilkes Land provides a unique record of Antarctic vegetation change from a subtropical, highly diverse Eocene rainforest to an Oligocene cold temperate forest and an impoverished Miocene sub-Antarctic shrubland. The pollen record suggests that temperatures were higher than in the Ross Sea region (i.e. Andrill, Cape Roberts) and the Wilkes Land margins were possibly one of the last refugia for temperate forest taxa on Antarctica during the Late Oligocene.

Reconstructing grassland fire history using sedimentary charcoal: Considering count, size and shape.

PubMed

Leys, Berangere A; Commerford, Julie L; McLauchlan, Kendra K

2017-01-01

Fire is a key Earth system process, with 80% of annual fire activity taking place in grassland areas. However, past fire regimes in grassland systems have been difficult to quantify due to challenges in interpreting the charcoal signal in depositional environments. To improve reconstructions of grassland fire regimes, it is essential to assess two key traits: (1) charcoal count, and (2) charcoal shape. In this study, we quantified the number of charcoal pieces in 51 sediment samples of ponds in the Great Plains and tested its relevance as a proxy for the fire regime by examining 13 potential factors influencing charcoal count, including various fire regime components (e.g. the fire frequency, the area burned, and the fire season), vegetation cover and pollen assemblages, and climate variables. We also quantified the width to length (W:L) ratio of charcoal particles, to assess its utility as a proxy of fuel types in grassland environments by direct comparison with vegetation cover and pollen assemblages. Our first conclusion is that charcoal particles produced by grassland fires are smaller than those produced by forest fires. Thus, a mesh size of 120μm as used in forested environments is too large for grassland ecosystems. We recommend counting all charcoal particles over 60μm in grasslands and mixed grass-forest environments to increase the number of samples with useful data. Second, a W:L ratio of 0.5 or smaller appears to be an indicator for fuel types, when vegetation surrounding the site is before composed of at least 40% grassland vegetation. Third, the area burned within 1060m of the depositional environments explained both the count and the area of charcoal particles. Therefore, changes in charcoal count or charcoal area through time indicate a change in area burned. The fire regimes of grassland systems, including both human and climatic influences on fire behavior, can be characterized by long-term charcoal records.

Reconstructing grassland fire history using sedimentary charcoal: Considering count, size and shape

PubMed Central

Leys, Berangere A.; Commerford, Julie L.; McLauchlan, Kendra K.

2017-01-01

Fire is a key Earth system process, with 80% of annual fire activity taking place in grassland areas. However, past fire regimes in grassland systems have been difficult to quantify due to challenges in interpreting the charcoal signal in depositional environments. To improve reconstructions of grassland fire regimes, it is essential to assess two key traits: (1) charcoal count, and (2) charcoal shape. In this study, we quantified the number of charcoal pieces in 51 sediment samples of ponds in the Great Plains and tested its relevance as a proxy for the fire regime by examining 13 potential factors influencing charcoal count, including various fire regime components (e.g. the fire frequency, the area burned, and the fire season), vegetation cover and pollen assemblages, and climate variables. We also quantified the width to length (W:L) ratio of charcoal particles, to assess its utility as a proxy of fuel types in grassland environments by direct comparison with vegetation cover and pollen assemblages. Our first conclusion is that charcoal particles produced by grassland fires are smaller than those produced by forest fires. Thus, a mesh size of 120μm as used in forested environments is too large for grassland ecosystems. We recommend counting all charcoal particles over 60μm in grasslands and mixed grass-forest environments to increase the number of samples with useful data. Second, a W:L ratio of 0.5 or smaller appears to be an indicator for fuel types, when vegetation surrounding the site is before composed of at least 40% grassland vegetation. Third, the area burned within 1060m of the depositional environments explained both the count and the area of charcoal particles. Therefore, changes in charcoal count or charcoal area through time indicate a change in area burned. The fire regimes of grassland systems, including both human and climatic influences on fire behavior, can be characterized by long-term charcoal records. PMID:28448597

The Early Miocene Critical Zone at Karungu, Western Kenya: An Equatorial, Open Habitat with Few Primate Remains

NASA Astrophysics Data System (ADS)

Lukens, William E.; Lehmann, Thomas; Peppe, Daniel J.; Fox, David L.; Driese, Steven G.; McNulty, Kieran P.

2017-10-01

Early Miocene outcrops near Karungu, Western Kenya, preserve a range of fluvio-lacustrine, lowland landscapes that contain abundant fossils of terrestrial and aquatic vertebrates. Primates are notably rare among these remains, although nearby early Miocene strata on Rusinga Island contain a rich assemblage of fossilized catarrhines and strepsirrhines. To explore possible environmental controls on the occurrence of early Miocene primates, we performed a deep-time Critical Zone (DTCZ) reconstruction focused on floodplain paleosols at the Ngira locality in Karungu. We specifically focused on a single stratigraphic unit (NG15), which preserves moderately developed paleosols that contain a microvertebrate fossil assemblage. Although similarities between deposits at Karungu and Rusinga Island are commonly assumed, physical sedimentary processes, vegetative cover, soil hydrology, and some aspects of climate state are notably different between the two areas. Estimates of paleoclimate parameters using paleosol B horizon elemental chemistry and morphologic properties are consistent with seasonal, dry subhumid conditions, occasional waterlogging, and herbaceous vegetation. The reconstructed small mammal community indicates periodic waterlogging and open-canopy conditions. Based on the presence of herbaceous root traces, abundant microcharcoal, and pedogenic carbonates with high stable carbon isotope ratios, we interpret NG15 to have formed under a warm, seasonally dry, open riparian woodland to wooded grassland, in which at least a subset of the vegetation was likely C4 biomass. Our results, coupled with previous paleoenvironmental interpretations for deposits on Rusinga Island, demonstrate that there was considerable environmental heterogeneity ranging from open to closed habitats in the early Miocene. We hypothesize that the relative paucity of primates at Karungu was driven by their environmental preference for locally abundant closed canopy vegetation, which was likely absent at Karungu, at least during the NG15 interval if not also earlier and later intervals that have not yet been studied in as much detail.

Holocene local forest history at two sites in Småland, southern Sweden - insights from quantitative reconstructions using the Landscape Reconstruction Algorithm

NASA Astrophysics Data System (ADS)

Cui, Qiaoyu; Gaillard, Marie-José; Lemdahl, Geoffrey; Olsson, Fredrik; Sugita, Shinya

2010-05-01

Quantitative reconstruction of past vegetation using fossil pollen was long very problematic. It is well known that pollen percentages and pollen accumulation rates do not represent vegetation abundance properly because pollen values are influenced by many factors of which inter-taxonomic differences in pollen productivity and vegetation structure are the most important ones. It is also recognized that pollen assemblages from large sites (lakes or bogs) record the characteristics of the regional vegetation, while pollen assemblages from small sites record local features. Based on the theoretical understanding of the factors and mechanisms that affect pollen representation of vegetation, Sugita (2007a and b) proposed the Landscape Reconstruction Algorithm (LRA) to estimate vegetation abundance in percentage cover for well defined spatial scales. The LRA includes two models, REVEALS and LOVE. REVEALS estimates regional vegetation abundance at a spatial scale of 100 km x 100 km. LOVE estimates local vegetation abundance at the spatial scale of the relevant source area of pollen (RSAP sensu Sugita 1993) of the pollen site. REVEALS estimates are needed to apply LOVE in order to calculate the RSAP and the vegetation cover within the RSAP. The two models were validated theoretically and empirically. Two small bogs in southern Sweden were studied for pollen, plant macrofossil, charcoal, and coleoptera in order to reconstruct the local Holocene forest and fire history (e.g. Greisman and Gaillard 2009; Olsson et al. 2009). We applied the LOVE model in order to 1) compare the LOVE estimates with pollen percentages for a better understanding of the local forest history; 2) obtain more precise information on the local vegetation to explain between-sites differences in fire history. We used pollen records from two large lakes in Småland to obtain REVEALS estimates for twelve continuous 500-yrs time windows. Following the strategy of the Swedish VR LANDCLIM project (see Gaillard et al.; Trondman et al., CL 1.22; Mazier et al. CL 1.21) we used 3 sets of pollen taxa (20, 22, 31) and 3 sets of pollen productivity estimates (PPEs) (1. southern Sweden; 2. southern Sweden except for cereals, Calluna, Plantago and Rumex, Denmark; 3. the mean of all PPEs available in NW Europe). The Spearman rank correlation test shows that there are no significant differences between the 9 runs. LOVE was applied on the pollen records from the two small bogs following the same strategy. We also compared the LOVE estimates (20 taxa, PPEs dataset 2) with the records of plant macro-remains and coleoptera species that are indicators of the local occurrence of conifers (Pinus and Picea), Betula, and deciduous trees. The results show large discrepancies between the LOVE estimates and pollen percentages. The LOVE estimates are higher than pollen percentages for Cyperaceae, Gramineae and Filipendula, and the broaded-leaved trees Corylus, Fraxinus, and Tilia. In contrast, the LOVE estimates for Pinus and Betula are generally much lower than their pollen percentages. LOVE estimates and pollen percentages are relatively similar for Alnus, Quercus, and Calluna. The LOVE reconstruction confirms the assumed difference between the sites in terms of the abundance of birch and pine, which was not clearly demonstrated by the pollen percentages and accumulation rates. The Pinus LOVE estimates are significantly higher at one of the sites, which explains the differences in fire history between the sites. The comparison of the LOVE estimates with plant macro-remains and coleoptera species shows a good correspondence. References: Greisman, A. and Gaillard, MJ, 2009. Journal of Quaternary Science, 24(6):593-611. Olsson, F. et al. 2009. Palaeogeography, Palaeoclimatology, Palaeoecology, 10.1016/j.palaeo.2009.07.013 Sugita, S., 1993. Quaternary Research, 39:239-244. Sugita, S., 2007a. The Holocene, 17(2):229-241. Sugita, S., 2007b. The Holocene, 17(2):243-257.

COMPARISON OF GEOGRAPHIC CLASSIFICATION SCHEMES FOR MID-ATLANTIC STREAM FISH ASSEMBLAGES

EPA Science Inventory

Understanding the influence of geographic factors in structuring fish assemblages is crucial to developing a comprehensive assessment of stream conditions. We compared the classification strengths (CS) of geographic groups (ecoregions and catchments), stream order, and groups bas...

Spatial variation in keystone effects: Small mammal diversity associated with black-tailed prairie dog colonies

USGS Publications Warehouse

Cully, J.F.; Collinge, S.K.; Van Nimwegen, R. E.; Ray, C.; Johnson, W.C.; Thiagarajan, Bala; Conlin, D.B.; Holmes, B.E.

2010-01-01

Species with extensive geographic ranges may interact with different species assemblages at distant locations, with the result that the nature of the interactions may vary spatially. Black-tailed prairie dogs Cynomys ludovicianus occur from Canada to Mexico in grasslands of the western Great Plains of North America. Black-tailed prairie dogs alter vegetation and dig extensive burrow systems that alter grassland habitats for plants and other animal species. These alterations of habitat justify the descriptor " ecological engineer," and the resulting changes in species composition have earned them status as a keystone species. We examined the impact of black-tailed prairie dogs on small mammal assemblages by trapping at on- and off-colony locations at eight study areas across the species' geographic range. We posed 2 nested hypotheses: 1) prairie dogs function as a keystone species for other rodent species; and 2) the keystone role varies spatially. Assuming that it does, we asked what are the sources of the variation? Black-tailed prairie dogs consistently functioned as a keystone species in that there were strong statistically significant differences in community composition on versus off prairie dog colonies across the species range in prairie grassland. Small mammal species composition varied along both latitudinal and longitudinal gradients, and species richness varied from 4 to 11. Assemblages closer together were more similar; such correlations approximately doubled when including only on- or off-colony grids. Black-tailed prairie dogs had a significant effect on associated rodent assemblages that varied regionally, dependent upon the composition of the local rodent species pool. Over the range of the black-tailed prairie dog, on-colony rodent richness and evenness were less variable, and species composition was more consistent than off-colony assemblages. ?? 2010 The Authors.

Effects of hydrologic connectivity on aquatic macroinvertebrate assemblages in different marsh types

USGS Publications Warehouse

Kang, Sung-Ryong; King, Sammy L.

2013-01-01

Hydrologic connectivity can be an important driver of aquatic macroinvertebrate assemblages. Its effects on aquatic macroinvertebrate assemblages in coastal marshes, however, are relatively poorly studied. We evaluated the effects of lateral hydrologic connectivity (permanently connected ponds: PCPs; temporary connected ponds: TCPs), and other environmental variables on aquatic macroinvertebrate assemblages and functional feeding groups (FFGs) in freshwater, brackish, and saline marshes in Louisiana, USA. We hypothesized that (1) aquatic macroinvertebrate assemblages in PCPs would have higher assemblage metric values (density, biomass, Shannon-Wiener diversity) than TCPs and (2) the density and proportional abundance of certain FFGs (i.e. scrapers, shredders, and collectors) would be greater in freshwater marsh than brackish and saline marshes. The data in our study only partially supported our first hypothesis: while freshwater marsh PCPs had higher density and biomass than TCPs, assemblage metric values in saline TCPs were greater than saline PCPs. In freshwater TCPs, long duration of isolation limited access of macroinvertebrates from adjacent water bodies, which may have reduced assemblage metric values. However, the relatively short duration of isolation in saline TCPs provided more stable or similar habitat conditions, facilitating higher assemblage metric values. As predicted by our second hypothesis, freshwater PCPs and TCPs supported a greater density of scrapers, shredders, and collectors than brackish and saline ponds. Aquatic macroinvertebrate assemblages seem to be structured by individual taxa responses to salinity as well as pond habitat attributes.

Tales from a distant swamp: Petrological and paleobotanical clues for the origin of the sand coal lithotype (Mississippian, Valley Fields, Virginia)

USGS Publications Warehouse

Hower, J.C.; O'Keefe, J.M.K.; Eble, C.F.

2008-01-01

Tournasian (Mississippian) Price Formation semianthracites (Rmax = 2.40%) in the Valley Fields of southwestern Virginia contain a lithotype described in an early-20th-century report as a "sand" coal. The Center for Applied Energy Research inherited a collection of coals containing sand coal specimens, making it possible to study the lithotype from the long-closed mines. The sand coal consists of rounded quartz sand and maceral assemblages (secretinite, corpogelinite, and rounded collotelinite) along with banded collotelinite, vitrodetrinite, and inertodetrinite assemblages. The association of rounded macerals and similar-size quartz grains suggests transport. Oxidation rims surrounding the rounded collotelinite provides further evidence for transport. Due to the semianthracite rank, palynology could not be performed. Stratigraphic evidence indicates that the Lepidodendropsis flora would have been the dominant mire vegetation. Pteridosperms in this assemblage could have contributed resin rodlets, subsequently metamorphosed to collogelinite or secretinite. While a resin rodlet origin is an intriguing possibility for the origin of the rounded macerals (at least some of the rounded maceral, the rounded collotelinite clearly has a different origin), we cannot definitively prove this origin. ?? 2008 Elsevier B.V. All rights reserved.

Edge-related loss of tree phylogenetic diversity in the severely fragmented Brazilian Atlantic forest.

PubMed

Santos, Bráulio A; Arroyo-Rodríguez, Víctor; Moreno, Claudia E; Tabarelli, Marcelo

2010-09-08

Deforestation and forest fragmentation are known major causes of nonrandom extinction, but there is no information about their impact on the phylogenetic diversity of the remaining species assemblages. Using a large vegetation dataset from an old hyper-fragmented landscape in the Brazilian Atlantic rainforest we assess whether the local extirpation of tree species and functional impoverishment of tree assemblages reduce the phylogenetic diversity of the remaining tree assemblages. We detected a significant loss of tree phylogenetic diversity in forest edges, but not in core areas of small (<80 ha) forest fragments. This was attributed to a reduction of 11% in the average phylogenetic distance between any two randomly chosen individuals from forest edges; an increase of 17% in the average phylogenetic distance to closest non-conspecific relative for each individual in forest edges; and to the potential manifestation of late edge effects in the core areas of small forest remnants. We found no evidence supporting fragmentation-induced phylogenetic clustering or evenness. This could be explained by the low phylogenetic conservatism of key life-history traits corresponding to vulnerable species. Edge effects must be reduced to effectively protect tree phylogenetic diversity in the severely fragmented Brazilian Atlantic forest.

Mammals of Australia's Tropical Savannas: A Conceptual Model of Assemblage Structure and Regulatory Factors in the Kimberley Region

PubMed Central

Radford, Ian J.; Dickman, Christopher R.; Start, Antony N.; Palmer, Carol; Carnes, Karin; Everitt, Corrin; Fairman, Richard; Graham, Gordon; Partridge, Thalie; Thomson, Allan

2014-01-01

We construct a state-and-transition model for mammals in tropical savannas in northern Australia to synthesize ecological knowledge and understand mammalian declines. We aimed to validate the existence of alternative mammal assemblage states similar to those in arid Australian grasslands, and to speculate on transition triggers. Based on the arid grassland model, we hypothesized that assemblages are partitioned across rainfall gradients and between substrates. We also predicted that assemblages typical of arid regions in boom periods would be prevalent in savannas with higher and more regular rainfall. Data from eight mammal surveys from the Kimberley region, Western Australia (1994 to 2011) were collated. Survey sites were partitioned across rainfall zones and habitats. Data allowed us to identify three assemblage states: State 0:- low numbers of mammals, State II:- dominated by omnivorous rodents and State III:- dominated by rodents and larger marsupials. Unlike arid grasslands, assemblage dominance by insectivorous dasyurids (State I) did not occur in savannas. Mammal assemblages were partitioned across rainfall zones and between substrates as predicted, but—unlike arid regions—were not related strongly to yearly rainfall. Mammal assemblage composition showed high regional stability, probably related to high annual rainfall and predictable wet season resource pulses. As a consequence, we speculate that perpetually booming assemblages in savannas allow top-down control of the ecosystem, with suppression of introduced cats by the dingo, the region's top predator. Under conditions of low or erratic productivity, imposed increasingly by intense fire regimes and introduced herbivore grazing, dingoes may not limit impacts of cats on native mammals. These interacting factors may explain contemporary declines of savanna mammals as well as historical declines in arid Australia. The cat-ecosystem productivity hypothesis raised here differs from the already-articulated cat-habitat structure hypothesis for mammal declines, and we suggest approaches for explicit testing of transition triggers for competing hypotheses. PMID:24670997

Mammals of Australia's tropical savannas: a conceptual model of assemblage structure and regulatory factors in the Kimberley region.

PubMed

Radford, Ian J; Dickman, Christopher R; Start, Antony N; Palmer, Carol; Carnes, Karin; Everitt, Corrin; Fairman, Richard; Graham, Gordon; Partridge, Thalie; Thomson, Allan

2014-01-01

We construct a state-and-transition model for mammals in tropical savannas in northern Australia to synthesize ecological knowledge and understand mammalian declines. We aimed to validate the existence of alternative mammal assemblage states similar to those in arid Australian grasslands, and to speculate on transition triggers. Based on the arid grassland model, we hypothesized that assemblages are partitioned across rainfall gradients and between substrates. We also predicted that assemblages typical of arid regions in boom periods would be prevalent in savannas with higher and more regular rainfall. Data from eight mammal surveys from the Kimberley region, Western Australia (1994 to 2011) were collated. Survey sites were partitioned across rainfall zones and habitats. Data allowed us to identify three assemblage states: State 0:--low numbers of mammals, State II:--dominated by omnivorous rodents and State III:--dominated by rodents and larger marsupials. Unlike arid grasslands, assemblage dominance by insectivorous dasyurids (State I) did not occur in savannas. Mammal assemblages were partitioned across rainfall zones and between substrates as predicted, but-unlike arid regions-were not related strongly to yearly rainfall. Mammal assemblage composition showed high regional stability, probably related to high annual rainfall and predictable wet season resource pulses. As a consequence, we speculate that perpetually booming assemblages in savannas allow top-down control of the ecosystem, with suppression of introduced cats by the dingo, the region's top predator. Under conditions of low or erratic productivity, imposed increasingly by intense fire regimes and introduced herbivore grazing, dingoes may not limit impacts of cats on native mammals. These interacting factors may explain contemporary declines of savanna mammals as well as historical declines in arid Australia. The cat-ecosystem productivity hypothesis raised here differs from the already-articulated cat-habitat structure hypothesis for mammal declines, and we suggest approaches for explicit testing of transition triggers for competing hypotheses.

The role of fire in deep time ecosystems

NASA Astrophysics Data System (ADS)

Scott, Andrew C.; Bond, William J.; Collinson, Margaret E.; Glasspool, Ian J.; Brown, Sarah; Braman, Dennis R.

2010-05-01

Fires are very widespread in the world today and fire has also been common in the deep past. Fire is important in structuring contemporary World vegetation maintaining extensive open vegetation where the climate has the potential to support closed forests. The influence of fire on the structure of vegetation and plant traits present in a community vary depending on the fire regime. The fire regime is the characteristic pattern of fire frequency, severity (amount of biomass removed) and spatial extent. Fire regimes depend on the synergy between external physical factors and the properties of vegetation. Changes in the fire regime can be brought about by changes in external conditions such as climate, but also by changes in vegetation such as changes in flammability or productivity that influence the amount of fuel. For example, invasion of grasses into closed wooded habitats has initiated a ‘grass fire cycle' in many parts of the world triggering cascading changes in vegetation structure and composition from forest to open grassland or savanna woodland. The spread of flammable invasive species, especially grasses, has even altered fire regimes of fire-dependent flammable communities causing catastrophic ecosystem changes. We suggest that the spread of angiosperms in the Cretaceous was promoted by the development of novel fire regimes linked to the evolution of novel, highly productive (and flammable) plants. Within the limits of physical constraints on fire occurrence, Cretaceous angiosperms would have initiated a positive feedback analogous to the grass-fire cycle rapidly accumulating fuel that promoted more frequent fires, which maintained open habitats in which rapid growth-traits of angiosperms would be most favoured promoting rapid fuel accumulation etc. Frequent fires would have altered vegetation structure and composition both by increasing mortality rates of fire-damaged trees and reducing recruitment rates of seedlings and saplings where fires recurred before juveniles had reached "fire-proof" sizes. The effect would be to create more open conditions favouring plants with the angiosperm innovations of high photosynthetic rates, rapid maturation and rapid reproduction relative to gymnosperms. Fire has some analogies to large vertebrate herbivory, particularly in the potential to open forests and create habitat for low-growing sun-loving plants over extensive areas. The role of fire in favouring low-growing ‘ruderal', plants of open habitats is similar to that proposed for dinosaurs. A switch from high-browsing dinosaurs in the Jurassic to low-browsing dinosaurs in the Cretaceous has been noted and it has been argued that the switch in browse height would favour fast-growing angiosperms. The dinosaur hypothesis has recently been tested and found wanting, for example in the timing and coincidence of angiosperm abundance and low vs. high-browsing dinosaurs. Our research of the co-occurrence of dinosaur remains and charcoal assemblages in Dinosaur Provincial Park, Alberta, has suggested that it was a dominance of gymnospermous, woody vegetation that was ravaged by fire. In addition, the co-occurrence of dinosaur remains and charcoal is significant in demonstrating that the some dinosaur bone beds may have formed as a result of extensive post-fire erosion/rapid deposition cycles. In this paper we consider the evidence for and against fire as a major factor promoting vegetation change and angiosperm spread in the Cretaceous.

Phylogenetic community structure: temporal variation in fish assemblage

PubMed Central

Santorelli, Sergio; Magnusson, William; Ferreira, Efrem; Caramaschi, Erica; Zuanon, Jansen; Amadio, Sidnéia

2014-01-01

Hypotheses about phylogenetic relationships among species allow inferences about the mechanisms that affect species coexistence. Nevertheless, most studies assume that phylogenetic patterns identified are stable over time. We used data on monthly samples of fish from a single lake over 10 years to show that the structure in phylogenetic assemblages varies over time and conclusions depend heavily on the time scale investigated. The data set was organized in guild structures and temporal scales (grouped at three temporal scales). Phylogenetic distance was measured as the mean pairwise distances (MPD) and as mean nearest-neighbor distance (MNTD). Both distances were based on counts of nodes. We compared the observed values of MPD and MNTD with values that were generated randomly using null model independent swap. A serial runs test was used to assess the temporal independence of indices over time. The phylogenetic pattern in the whole assemblage and the functional groups varied widely over time. Conclusions about phylogenetic clustering or dispersion depended on the temporal scales. Conclusions about the frequency with which biotic processes and environmental filters affect the local assembly do not depend only on taxonomic grouping and spatial scales. While these analyzes allow the assertion that all proposed patterns apply to the fish assemblages in the floodplain, the assessment of the relative importance of these processes, and how they vary depending on the temporal scale and functional group studied, cannot be determined with the effort commonly used. It appears that, at least in the system that we studied, the assemblages are forming and breaking continuously, resulting in various phylogeny-related structures that makes summarizing difficult. PMID:25360256

Fish assemblages in a western Iowa stream modified by grade control structures

USGS Publications Warehouse

Litvan, M.E.; Pierce, C.L.; Stewart, T.W.; Larson, C.J.

2008-01-01

Over 400 riprap grade control structures (GCSs) have been built in streams of western Iowa to reduce erosion and protect bridges, roads, and farmland. In conjunction with a companion study evaluating fish passage over GCSs in Turkey Creek, we evaluated the differences in fish assemblage and habitat characteristics in reaches immediately downstream from GCSs (GCS sites) and reaches at least 1 km from any GCS (non-GCS sites). The GCS sites were characterized by greater proportions of pool habitat, maximum depths, fish biomass, and abundance of juvenile largemouth bass Micropterus salmoides than were non-GCS sites. Index of biotic integrity (IBI) scores were poor or fair (<43 on a 0-100 scale) and not significantly different between the GCS and non-GCS sites. Additionally, we investigated both the longitudinal changes in fish assemblages in this GCS-fragmented stream and the changes in fish assemblages after slope modifications of three GCSs to facilitate fish passage. Thirteen fish species were present throughout the study area, whereas another 15 species exhibited truncated distributions not extending to the most upstream sampling location. After modification of the GCSs, IBI scores increased at seven of nine sites (mean increase =4.6 points). Also, channel catfish Ictalurus punctatus were detected 7.3 km upstream at sites where, 2 years before GCS modification, they had been absent from collections. Given the number and distribution of GCSs in western Iowa streams, understanding the effects of these structures is vital to the conservation and management of fish assemblages in this and other regions where GCSs or similar structures are used. ?? Copyright by the American Fisheries Society 2008.

Fish assemblages and habitat relationships in a small northern Great Plains stream

USGS Publications Warehouse

Barfoot, C.A.; White, R.G.

1999-01-01

We examined fish populations and environmental characteristics of pool and riffle habitats of Little Beaver Creek, Montana, a small northern Great Plains stream. We collected 4,980 fishes representing 20 species in eight families. The most abundant and species-rich family was Cyprinidae. Nearly 88% (4,369) of all fishes were collected in pools. Pools also supported greater numbers ofspecies (x = 6.3, SO = 2.6, n = 58) than did riffles ( x = 2.2, SO = 1.9, n = 47). Most species showed distinct patterns of relative abundance along the stream gradient. Community changes were primarily reflected by the downstream addition of species; species replacement was of less importance. A multivariate analysis of fish relative abundance identified two relatively well-defined pool fish assemblages: a downstream assemblage comprised largely of native fluvial cyprinids, and a more diverse midstream-upstream assemblage comprised of fishes from several families. No well-defined assemblages were identified in riffle habitats. Environmental measures of stream size, substrate characteristics, water clarity, and banks ide conditions appeared to be associated with differences in fish assemblage structure. However, correlations between habitat conditions and fish assemblages were weak, possibly because a complex of factors act conculTently to shape assemblages.

The influence of fire on the assemblage structure of foraging birds in grasslands of the Serra da Canastra National Park, Brazil.

PubMed

Reis, Matheus G; Fieker, Carolline Z; Dias, Manoel M

2016-05-13

Grasslands are the most threatened physiognomies of the Cerrado biome (Brazilian savanna), a biodiversity hotspot with conservation as a priority. The Serra da Canastra National Park protects the most important remnants of the Cerrado's southern grasslands, which are under strong anthropogenic pressure. The present study describes the structure of bird assemblages that directly use food resources in burned areas, comparing areas affected by natural fire to the areas where controlled fires were set (a management strategy to combat arson). The tested null hypothesis was that different bird assemblages are structured in a similar manner, regardless of the post-fire period or assessed area. Between December/2012 and January/2015, 92 species were recorded foraging in the study areas. The results indicate that both types of burnings triggered profound and immediate changes in bird assemblages, increasing the number of species and individuals. Natural fires exhibited a more significant influence on the structure (diversity and dominance) than prescribed burnings. Nevertheless, all the differences were no longer noticeable after a relatively short time interval of 2-3 months after prescribed burnings and 3-4 after natural fires. The findings may help the understanding of prescribed burnings as a management strategy for bird conservation in grasslands.

Arthropod recolonization in the restoration of a semideciduous forest in southeastern Brazil.

PubMed

Pais, Mara P; Varanda, Elenice M

2010-01-01

The use of arthropods for monitoring habitat changes has grown widely in the last decades. In Brazil, however, most of the studies in restored areas have involved only vegetation changes. The present study aimed at investigating recolonization patterns of epigeic arthropods in recently restored sites of semideciduous forests in southeastern Brazil. We compared the community structure of adjoining sites 5, 17, 29 and 36 months old with that at a nearby forest remnant (reference site). We also determined the most abundant species and looked for ecological indicator species of each site age. Arthropods were sampled using pitfall traps, and their assemblages were described and compared with multi- and univariate statistical methods. Species abundance and richness equivalent to the reference site were reached at five months after planting, however species composition was very distinctive not only in relation to the reference site, but also among restored sites. Some of the main species found in this restoration stage are common in agroecosystems or cerrado vegetation. Nevertheless, there was a clear trend of arthropod fauna in restored sites moving toward the fauna in the forest remnant over time. Our results also highlighted ants and termites because of their abundance and ants because of their high value as ecological indicators of restoration age.

Braided fluvial sedimentation in the lower paleozoic cape basin, South Africa

NASA Astrophysics Data System (ADS)

Vos, Richard G.; Tankard, Anthony J.

1981-07-01

Lower Paleozoic braided stream deposits from the Piekenier Formation in the Cape Province, South Africa, provide information on lateral and vertical facies variability in an alluvial plain complex influenced by a moderate to high runoff. Four braided stream facies are recognized on the basis of distinct lithologies and assemblages of sedimentary structures. A lower facies, dominated by upward-fining conglomerate to sandstone and mudstone channel fill sequences, is interpreted as a middle to lower alluvial plain deposit with significant suspended load sedimentation in areas of moderate to low gradients. These deposits are succeeded by longitudinal conglomerate bars which are attributed to middle to upper alluvial plain sedimentation with steeper gradients. This facies is in turn overlain by braid bar complexes of large-scale transverse to linguoid dunes consisting of coarse-grained pebbly sandstones with conglomerate lenses. These bar complexes are compared with environments of the Recent Platte River. They represent a middle to lower alluvial plain facies with moderate gradients and no significant suspended load sedimentation or vegetation to stabilize channels. These bar complexes interfinger basinward with plane bedded medium to coarse-grained sandstones interpreted as sheet flood deposits over the distal portions of an alluvial plain with low gradients and lacking fine-grained detritus or vegetation.

Global mammal beta diversity shows parallel assemblage structure in similar but isolated environments

PubMed Central

Graham, Catherine H.; Brooks, Thomas M.; Rondinini, Carlo; Hedges, S. Blair; Davidson, Ana D.; Costa, Gabriel C.

2016-01-01

The taxonomic, phylogenetic and trait dimensions of beta diversity each provide us unique insights into the importance of historical isolation and environmental conditions in shaping global diversity. These three dimensions should, in general, be positively correlated. However, if similar environmental conditions filter species with similar trait values, then assemblages located in similar environmental conditions, but separated by large dispersal barriers, may show high taxonomic, high phylogenetic, but low trait beta diversity. Conversely, we expect lower phylogenetic diversity, but higher trait biodiversity among assemblages that are connected but are in differing environmental conditions. We calculated all pairwise comparisons of approximately 110 × 110 km grid cells across the globe for more than 5000 mammal species (approx. 70 million comparisons). We considered realms as units representing geographical distance and historical isolation and biomes as units with similar environmental conditions. While beta diversity dimensions were generally correlated, we highlight geographical regions of decoupling among beta diversity dimensions. Our analysis shows that assemblages from tropical forests in different realms had low trait dissimilarity while phylogenetic beta diversity was significantly higher than expected, suggesting potential convergent evolution. Low trait beta diversity was surprisingly not found between isolated deserts, despite harsh environmental conditions. Overall, our results provide evidence for parallel assemblage structure of mammal assemblages driven by environmental conditions at a global scale. PMID:27559061

Depth and Medium-Scale Spatial Processes Influence Fish Assemblage Structure of Unconsolidated Habitats in a Subtropical Marine Park

PubMed Central

Schultz, Arthur L.; Malcolm, Hamish A.; Bucher, Daniel J.; Linklater, Michelle; Smith, Stephen D. A.

2014-01-01

Where biological datasets are spatially limited, abiotic surrogates have been advocated to inform objective planning for Marine Protected Areas. However, this approach assumes close correlation between abiotic and biotic patterns. The Solitary Islands Marine Park, northern NSW, Australia, currently uses a habitat classification system (HCS) to assist with planning, but this is based only on data for reefs. We used Baited Remote Underwater Videos (BRUVs) to survey fish assemblages of unconsolidated substrata at different depths, distances from shore, and across an along-shore spatial scale of 10 s of km (2 transects) to examine how well the HCS works for this dominant habitat. We used multivariate regression modelling to examine the importance of these, and other environmental factors (backscatter intensity, fine-scale bathymetric variation and rugosity), in structuring fish assemblages. There were significant differences in fish assemblages across depths, distance from shore, and over the medium spatial scale of the study: together, these factors generated the optimum model in multivariate regression. However, marginal tests suggested that backscatter intensity, which itself is a surrogate for sediment type and hardness, might also influence fish assemblages and needs further investigation. Species richness was significantly different across all factors: however, total MaxN only differed significantly between locations. This study demonstrates that the pre-existing abiotic HCS only partially represents the range of fish assemblages of unconsolidated habitats in the region. PMID:24824998

Convergence of temperate and tropical stream fish assemblages

EPA Science Inventory

The hypothesis of convergence takes the deterministic view that community (or assemblage) structure can be predicted from the environment, and that the environment is expected to drive evolution in a predictable direction. Here we present results of a comparative study of freshwa...

A Multi-proxy Approach to Using Cave Sediment Carbon Isotopes for Late Holocene Paleoenvironmental Reconstruction in Florida

NASA Astrophysics Data System (ADS)

Polk, J. S.; van Beynen, P.

2007-12-01

Carbon isotopes from cave sediments collected from Jennings Cave in Marion County, Florida were analyzed using a multi-proxy approach. Fulvic acids (FAs), humic acids (HAs), black carbon, phytoliths, and bulk organic matter were extracted from the sediments for carbon isotope analysis to determine periods of vegetation change caused by climatic influences during the Late Holocene (~\\ 2,800 years BP). The carbon isotope record ranges from -35‰ to -14‰, exhibiting variability of ~\\ -21‰, within the different proxies, which indicates changes between C3 and C4 vegetation. This likely indicates changes between a sub-tropical forested environment and more arid, grassy plains conditions. These changes in plant assemblages were in response to changes in available water resources, with increased temperatures and evapotranspiration leading to arid conditions and a shift toward less C3 vegetation (increased C4 vegetation) during the MWP. The cave sediment fulvic acid cabon isotopes record agrees well with ä13C values from a speleothem collected nearby that covers the same time period. Prolonged migration of the NAO and ITCZ affects precipitation in Florida and likely caused vegetation changes during these climatic shifts.

Deep-sea nematode assemblage has not recovered 26 years after experimental mining of polymetallic nodules (Clarion-Clipperton Fracture Zone, Tropical Eastern Pacific)

NASA Astrophysics Data System (ADS)

Miljutin, Dmitry M.; Miljutina, Maria A.; Arbizu, Pedro Martínez; Galéron, Joëlle

2011-08-01

We investigated nematode assemblages inhabiting the 26-year-old track created by experimental deep-sea mining of polymetallic nodules, and two adjacent, undisturbed sites, one with nodules and one without nodules. The aim was to compare density, assemblage structure, and diversity indices in order to assess the process of recovery of the nematode assemblage inhabiting the disturbed site. This experimental dredging was conducted in 1978 by the Ocean Minerals Company (USA) in the area of a French mining claim in the Clarion-Clipperton Fracture Zone (Tropical Eastern Pacific) at a depth of about 5000 m. The nematode assemblage had not returned its initial state 26 years after the experimental dredging: the total nematode density and biomass within the dredging track were significantly lower than outside the track; the biodiversity indices showed significantly lower nematode diversity within the track; and the structure of the nematode assemblage within the track differed significantly from those in the two undisturbed sites outside the track. However, there were no significant differences in the mean body volumes of adult nematodes and adult-juvenile ratios between the track and reference sites. Parameters such as the rate of sediment restoration (which depends on local hydrological conditions) and the degree and character of the disturbance appeared to be of considerable importance for the recovery rate of the deep-sea nematode assemblages and their ability to recolonize disturbed areas. The rates of recolonization and recovery may vary widely in different deep-sea regions.

Pollen, vegetation, and climate relationships along the Dalton Highway, Alaska, USA: a basis for holocene paleoecological and paleoclimatic studies

DOE Office of Scientific and Technical Information (OSTI.GOV)

Short, S.K.; Andrews, J.T.; Webber, P.J.

The Dalton Highway extends from Fairbanks, in the interior of Alaska, to Prudhoe Bay on the Arctic Coastal Plain. Over this 600-km transect, July temperatures vary from 17 to 5/sup 0/C. Studies of vegetation along the Dalton Highway identified nine major zones. During the vegetation survey moss polsters were collected within the survey quadrats. Two hundred and nineteen individual moss polsters document regional variations in the modern pollen spectra along this vegetation/climate transect. Treeline is distinguished by a change from dominance by spruce and shrub (especially alder) pollen to the south to herb and shrub (especially willow) pollen dominance tomore » the north; a shift from high modern pollen concentration values to very low values is also noted. Discriminant analysis indicated that the vegetation zones are also defined by different pollen assemblages, suggesting that former changes in vegetation during the Holocene, as recorded in peat deposits, could be interpreted from pollen diagrams. Transfer functions were developed to examine the statistical association between the modern pollen rain and several climatic parameters. The correlation between pollen taxa and mean July temperature was r = 0.84. The most important taxa in the equation are Picea, Alnus, Pinus, Sphagnum, and Betula. 59 references, 7 figures, 4 tables.« less

Vegetation and climate development on the Atlantic Coastal Plain during the late Mid-Miocene Climatic Optimum (IODP Expedition 313)

NASA Astrophysics Data System (ADS)

Prader, Sabine; Kotthoff, Ulrich; McCarthy, Francine; Greenwood, David

2015-04-01

The major aims of IODP Expedition 313 are estimating amplitudes, rates and mechanisms of sea-level change and the evaluation of sequence stratigraphic facies models that predict depositional environments, sediment compositions, and stratal geometries in response to sea-level change. Cores from three Sites (313-M0027, M0028, and M0029) from the New Jersey shallow shelf (water depth approximately 35 m) were retrieved during May to July 2009, using an ECORD "mission-specific" jack-up platform. We have investigated the palynology of sediment cores from Site M0027, 45 km off the present-day coast of New Jersey. For this study, we have focused on pollen studies for the second half of the Mid-Miocene Climatic Optimum (MMCO) and the subsequent transition to cooler conditions (ca. 15 to 13 million years before present). Transport-caused bias of the pollen assemblages was identified via the analysis of the terrestrial/marine palynomorph ratio and these results were considered when interpreting palaeo-vegetation from the pollen data. Pollen preservation in the interval analyzed herein was generally very good. Pollen grains were analyzed via both light and scanning electron microscopy. For most samples, the pollen assemblages were not highly diverse. The most abundant taxa through all samples were Quercus (oak) and Carya (hickory). Typical wetland elements like Cyperaceae, Taxodium (cypress), Nyssa (tupelo tree) and taxa today growing in the tropics and subtropics like Sapotaceae, Symplocaceae, Arecaceae (palm trees) and Alangium, which indicate particularly warm climate conditions, were only sporadically found, but indicate warmer phases during the second half of the MMCO. Herbal pollen was generally rare, but members of the Asteraceae, Apiaceae, and Ericaceae families, together with infrequent occurences of Poaceae pollen indicate the presence of areas with open vegetation. The Mid-Miocene pollen assemblages reflect a vegetation in the hinterland of the New Jersey shelf which was reminiscent of Oligocene and early Miocene ecosystems analyzed in previous studies (e.g. Kotthoff et al. 2014). The ecosystem was characterized by oak-hickory forests which probably dominated in the lowlands, while frequent occurrence of conifer pollen (Pinus, Picea, Abies, Sciadopitys, and Tsuga canadensis) indicate that conifer forests prevailed in higher altitudes during the MMCO. We assume that the Miocene uplift of the Appalachian Mountains (e.g. Gallen et al., 2013) led to the proliferation of mountainous taxa and thus to an increase of related pollen taxa in the palynological record. References: Gallen, S. F., Wegmann, K. W., Bohnenstieh, D. W. R.: Miocene rejuvenation of topographic relief in the southern Appalachians, GSA Today, 23, 4-10, 2013. Kotthoff, U., McCarthy, F.M.G., Greenwood, D.R., Müller-Navarra, K., Prader, S., Hesselbo, S.P., (2014): Vegetation and climate development on the Atlantic Coastal Plain from 33 to 13 million years ago (IODP expedition 313). Climate of the Past 10, 1523-1539.

Recent changes in aquatic biota in subarctic Fennoscandia - the role of global and local environmental variables

NASA Astrophysics Data System (ADS)

Weckström, Jan; Leppänen, Jaakko; Sorvari, Sanna; Kaukolehto, Marjut; Weckström, Kaarina; Korhola, Atte

2013-04-01

The Arctic, representing a fifth of the earth's surface, is highly sensitive to the predicted future warming and it has indeed been warming up faster than most other regions. This makes the region critically important and highlights the need to investigate the earliest signals of global warming and its impacts on the arctic and subarctic aquatic ecosystems and their biota. It has been demonstrated that many Arctic freshwater ecosystems have already experienced dramatic and unpreceded regime shifts during the last ca. 150 years, primarily driven by climate warming. However, despite the indisputable impact of climate-related variables on freshwater ecosystems other, especially local-scale catchment related variables (e.g. geology, vegetation, human activities) may override the climate signal and become the primary factor in shaping the structure of aquatic ecosystems. Although many studies have contributed to an improved understanding of limnological and hydrobiological features of Artic and subarctic lakes, much information is still needed especially on the interaction between the biotic and abiotic components, i.e. on factors controlling the food web dynamics in these sensitive aquatic ecosystems. This is of special importance as these lakes are of great value in water storage, flood prevention, and maintenance of biodiversity, in addition to which they are vital resources for settlement patterns, food production, recreation, and tourism. In this study we compare the pre-industrial sediment assemblages of primary producers (diatoms and Pediastrum) and primary consumers (cladoceran and chironomids) with their modern assemblages (a top-bottom approach) from 50 subarctic Fennoscandian lakes. We will evaluate the recent regional pattern of changes in aquatic assemblages, and assess how coherent the lakes' responses are across the subarctic area. Moreover, the impact of global (e.g. climate, precipitation) and local (e.g. lake and its catchment characteristics) scale environmental changes on the aquatic biota will be compared and discussed.

Evidence for community structure and habitat partitioning in coastal dune stiletto flies at the Guadalupe-Nipomo dunes system, California

PubMed Central

Holston, Kevin C.

2005-01-01

This study provides empirical evidence for habitat selection by North American species of stiletto flies (Diptera: Therevidae), based on local distributions of adults and immatures, and the first hypothesis of community assemblages proposed for a stiletto fly community. Sites at three localities within the Guadalupe-Nipomo dune system were sampled for stiletto flies in 1997 and 2001 by sifting sand, malaise trapping, and hand netting. Nine species were collected from four ecological zones and three intermediate ecological zones: Acrosathe novella (Coquillett), Brachylinga baccata (Loew), Nebritus powelli (Webb and Irwin), Ozodiceromyia sp., Pherocera sp., Tabudamima melanophleba (Loew), Thereva comata Loew, Thereva elizabethae Holston and Irwin, and Thereva fucata Loew. Species associations of adults and larvae with habitats and ecological zones were consistent among sites, suggesting that local distributions of coastal dune stiletto fly species are influenced by differences in habitat selection. In habitats dominated by the arroyo willow,Salix lasiolepsis, stiletto fly larvae of three species were collected in local sympatry, demonstrating that S. lasiolepsis stands along stabilized dune ridges can provide an intermediate ecological zone linking active dune and riparian habitat in the Guadalupe-Nipomo dune system. Sites dominated by European beach grass, Ammophilia arenaria, blue gum, Eucalyptus globulus, and Monterey cypress, Cupressus macrocarpa, are considered unsuitable for stiletto flies, which emphasizes the importance of terrestrial habitats with native vegetation for stiletto fly species. The local distributions of stiletto fly species at the Guadalupe-Nipomo dune system allow the community to be divided into three assemblages; active dune, pioneer scrub, and scrub-riparian. These assemblages may be applicable to other coastal dune stiletto fly communities, and may have particular relevance to stiletto fly species collected in European coastal dunes. The results from this study provide a descriptive framework for studies testing habitat selection in coastal dune stiletto fly species and inform conservation of threatened dune insects. PMID:17119624

Phytoplankton assemblages in high-elevation lakes in the northern Cascade Mountains, Washington State, USA

USGS Publications Warehouse

Larson, Gary L.; McIntire, C.D.; Truitt, R.E.; Liss, W.J.; Hoffman, Robert L.; Deimling, E.; Lomnicky, G.A.

1998-01-01

Phytoplankton assemblages in high-elevation lakes of North Cascades National Park Service Complex were studied during the open-water period in 1989. Collectively, 93 taxa were identified in 55 samples from 51 lakes. Based on cell densities, cyanobacteria had the highest relative abundance (36.7 %), followed by chlorophytes (29.8 %), and chrysophytes (19.6 %). Aphanocapsa delicatissima had the highest proportional abundance (14.0 %). Only 15.1 % percent of the taxa occurred in more than 20 samples. Phytoplankton cell densities increased following a gradient of increasing lake-water temperature, alkalinity, and concentration of total Kjeldahl-N with decreasing lake elevation. Chrysophytes and cyanobacteria were quantitatively (relative abundance) the most important taxa in alpine and subalpine lakes, whereas cyanobacteria had the highest relative abundances in high-forest and low-forest lakes. Chlorophytes had their highest relative abundance in high-forest lakes. Although low in relative abundance, diatoms and dinoflagellates were most abundant in alpine lakes. An ordination by correspondence analysis indicated that most alpine, subalpine, and high-forest lakes had similar floras. Although a few subalpine lakes exhibited deviations from this pattern, the main differences in phytoplankton composition were found in a group of low-forest and high-forest lakes. Canonical correspondence analysis (CCA) provided evidence that the distribution of samples and taxa in ordination space was correlated with a gradient of decreasing lake elevation and increasing water temperature, alkalinity, and concentration of nitrogen. When CCA was used to examine relationships among phytoplankton taxa and vegetation zones, a continuous distribution of taxa was found from the low-forest zone to the subalpine zone, with a large number of taxa occurring primarily in the subalpine and high-forest zones. Three phytoplankton taxa occurred primarily in alpine lakes, whereas five taxa co-occurred in alpine, subalpine, and high forest zones. Collectively, lake elevation and associated changes in water quality and concentrations of nutrients, especially nitrogen, appeared to be the primary physical and chemical factors influencing the taxonomic structures of phytoplankton assemblages.

Vegetation change and terrestrial carbon storage in eastern Asia during the Last Glacial Maximum as indicated by a new pollen record from central Taiwan

NASA Astrophysics Data System (ADS)

Liew, P. M.; Kuo, C. M.; Huang, S. Y.; Tseng, M. H.

1998-05-01

Last Glacial Maximum (LGM) carbon storage in eastern Asia is a key issue for understanding the sinks and sources of paleocarbon. Palynological data with good time constraint for the LGM in a peat bog from a site at 650 m above mean sea level in central Taiwan, together with data from low-lying deltaic and basin deposits of Taiwan and South China, increase our understanding about vegetational evolution and possible terrestrial carbon storage in this area and probably eastern Asia. Contrasting to today's Machilus-Castanopsis forest zone around the peat bog, the vegetation before the LGM was dominated by Alnus, a relatively xerophytic element in Taiwan. An increase in herbs and decrease in spores during the LGM is recognized when compared with Holocene and modern assemblages. A less humid interval dominated by herbs (>50%) occurred between 21 and 15.8 ka. Basin deposits in northern Taiwan and deltaic deposits in central Taiwan show that during the LGM Artemisia, Umbelliferae and Gramineae were the main components contrasting with the Pinus or Cyclobalanopsis-dominant assemblages in the rest of the last glacial. Thus, less humid conditions lasted about 5000 to 6000 years in the LGM even on this very humid island. This may also be true in eastern Asia where a large area of the widely exposed continental shelf may have been occupied by grasslands and the uplands of South China were occupied by less dense coniferous or temperate forests during the LGM in contrast to the modern subtropical forest. This scenario improves our understanding of the terrestrial paleocarbon storage.

The response of southern California ecosystems to Younger Dryas-like rapid climate change: Comparison of glacial terminations 1 and 5.

NASA Astrophysics Data System (ADS)

Heusser, L. E.; Hendy, I. L.

2015-12-01

The Younger Dryas is a well-known rapid climatic cooling that interrupted the Marine Isotope Stage (MIS) 1-2 deglacial warming of Termination 1. This cool event has been associated with ice sheet readvance, meridional overturning, circulation changes, and southward movement of the Intertropical Convergence Zone. In Southern California, the Younger Dryas has been associated with cooler SST, low marine productivity, a well-ventilated oxygen minimum zone, and a wetter climate. Similar rapid cooling events have been found at other terminations including Termination 5 at the MIS 11-12 deglaciation (~425 Ka) identified by ice rafting events in the North Atlantic. Here we present new pollen census data from a unique suite of cores taken from the sub-oxic sediments of Santa Barbara Basin (MV0508-15JC, MV0805-20JC, MV0508-33JC, 29JC and 21JC). These short cores, collected on a truncated anticline within SBB, provide the opportunity to examine the response of southern California terrestrial and marine ecosystems to rapid climate change during the MIS 11-12 deglaciation (Termination 5), which is identified by a bioturbated interval within a sequence of laminated sediments. During Termination 1, changes in Southern California precipitation are reflected in pollen- based reconstructions Southern California vegetation. The high precipitation of glacial montane-coniferous assemblages of pine (Pinus) and Juniper (Juniperus/Calocedrus) transitions into interglacial drought, as expresssed by arid oak (Quercus)/chaparral vegetation. The Younger Dryas interrupts the transition as a high-amplitude pulse in pine associated with increased Gramineae (grass). Termination 5 differs, as the high precipitation of glacial montane-coniferous assemblages do not transition into arid oak/chaparral vegetation. However, a Younger Dryas-like rapid climate event was associated with increased pine and grass.

Tidal Channel Diatom Assemblages Reflect within Wetland Environmental Conditions and Land Use at Multiple Scales

EPA Science Inventory

We characterized regional patterns of the tidal channel benthic diatom community and examined the relative importance of local wetland and surrounding landscape level factors measured at multiple scales in structuring this assemblage. Surrounding land cover was characterized at ...

Effects of offshore platforms on soft-bottom macro-benthic assemblages: a case study in a Mediterranean gas field.

PubMed

Terlizzi, Antonio; Bevilacqua, Stanislao; Scuderi, Danilo; Fiorentino, Dario; Guarnieri, Giuseppe; Giangrande, Adriana; Licciano, Margherita; Felline, Serena; Fraschetti, Simonetta

2008-07-01

The exploitation of fossil fuels in the Mediterranean Sea will likely lead to an increase in the number of offshore platforms, a recognized threat for marine biodiversity. To date, in this basin, few attempts have been made to assess the impact of offshore gas and oil platforms on the biodiversity of benthic assemblages. Here, we adopted a structured experimental design coupled with high taxonomic resolution to outline putative effects of gas platforms on soft-bottom macrofauna assemblages in the North Ionian Sea. The analysis was based on a total of 20,295 specimens of 405 taxa, almost entirely identified at species level. Multivariate and univariate analyses showed idiosyncratic patterns of assemblage change with increasing distance from the platforms. Potential reasons underlying such inconsistency are analyzed and the view that structured experimental monitoring is a crucial tool to quantify the extent and magnitude of potential threats and to provide sound baseline information on biodiversity patterns is supported.

The effect of range changes on the functional turnover, structure and diversity of bird assemblages under future climate scenarios.

PubMed

Barbet-Massin, Morgane; Jetz, Walter

2015-08-01

Animal assemblages fulfill a critical set of ecological functions for ecosystems that may be altered substantially as climate change-induced distribution changes lead to community disaggregation and reassembly. We combine species and community perspectives to assess the consequences of projected geographic range changes for the diverse functional attributes of avian assemblages worldwide. Assemblage functional structure is projected to change highly unevenly across space. These differences arise from both changes in the number of species and changes in species' relative local functional redundancy or distinctness. They sometimes result in substantial losses of functional diversity that could have severe consequences for ecosystem health. Range expansions may counter functional losses in high-latitude regions, but offer little compensation in many tropical and subtropical biomes. Future management of local community function and ecosystem services thus relies on understanding the global dynamics of species distributions and multiscale approaches that include the biogeographic context of species traits. © 2015 John Wiley & Sons Ltd.

The problem and promise of scale dependency in community phylogenetics.

PubMed

Swenson, Nathan G; Enquist, Brian J; Pither, Jason; Thompson, Jill; Zimmerman, Jess K

2006-10-01

The problem of scale dependency is widespread in investigations of ecological communities. Null model investigations of community assembly exemplify the challenges involved because they typically include subjectively defined "regional species pools." The burgeoning field of community phylogenetics appears poised to face similar challenges. Our objective is to quantify the scope of the problem of scale dependency by comparing the phylogenetic structure of assemblages across contrasting geographic and taxonomic scales. We conduct phylogenetic analyses on communities within three tropical forests, and perform a sensitivity analysis with respect to two scaleable inputs: taxonomy and species pool size. We show that (1) estimates of phylogenetic overdispersion within local assemblages depend strongly on the taxonomic makeup of the local assemblage and (2) comparing the phylogenetic structure of a local assemblage to a species pool drawn from increasingly larger geographic scales results in an increased signal of phylogenetic clustering. We argue that, rather than posing a problem, "scale sensitivities" are likely to reveal general patterns of diversity that could help identify critical scales at which local or regional influences gain primacy for the structuring of communities. In this way, community phylogenetics promises to fill an important gap in community ecology and biogeography research.

Seasonal patterns of activity and community structure in an amphibian assemblage at a pond network with variable hydrology

NASA Astrophysics Data System (ADS)

Vignoli, Leonardo; Bologna, Marco A.; Luiselli, Luca

2007-03-01

We studied community structure and seasonal activity patterns in a system of four ponds with seasonally-variable hydrology at a Mediterranean area in central Italy. We used a set of field methods to assess species presence and relative frequency of observation. The network of ponds was inhabited by six species of amphibians, two salamanders and four frogs. The breeding phenology of the six species did not vary remarkably among ponds, but there were significant differences among species in use of ponds. Factorial analysis of pond similarity drawn from percentage composition of the amphibian fauna, revealed that each of the four ponds was treatable as independent units, with no influence of relative inter-pond distance. PCA analysis allowed us to spatially arrange the amphibian species into three main groups: two were monospecific groups (i.e., Triturus vulgaris and Bufo bufo) and the third consisted of those species that selected not only the largest-deepest ponds, but also the ephemeral ones (i.e., Triturus carnifex, Hyla intermedia, the green frogs and Rana dalmatina). Our results suggest that the inter-pond differences in riparian vegetation, water depth, aquatic vegetation structure/abundance, and soil composition may produce differences among pond ecological characteristics (i.e., water turbidity and temperature, shelter availability, abundance of oviposition micro-sites), which may in turn influence different patterns of use by amphibians. To our knowledge, this is the first study emphasizing the potential role of heterochrony in the maintenance of a high species richness in Mediterranean amphibian communities. Preservation of freshwater vertebrate biodiversity requires management and protection not only of the main ponds and water bodies but also the temporary and ephemeral shallow ponds.

Macrofaunal Succession and Community Structure in Salicornia Marshes of Southern California

NASA Astrophysics Data System (ADS)

Talley, T. S.; Levin, L. A.

1999-11-01

Lack of basic understanding of ecosystem structure and function forms a major impediment to successful conservation of coastal ecosystems. This paper provides a description of the fauna and examines faunal succession in Salicornia -vegetated sediments of southern California. Environmental attributes (vegetation and sediment properties) and macrofaunal (animals ≥0·3 mm) community structure were examined in sediments of five natural, southern California Salicornia spp. marshes (Tijuana Estuary, San Diego Bay, Mission Bay, Upper Newport Bay and Anaheim Bay) and in created Salicornia marshes 16 months to 10 years in age, located within four of the bays. Oligochaetes and insects were the dominant taxa in both natural (71 to 98% of total fauna) and created (91 to 97%) marshes. In San Diego, Newport and Anaheim Bays, macrofaunal densities were generally higher in the created marshes (88 000 to 290 000 ind m -2) than in their natural counterparts (26 000 to 50 000 ind m -2). In the youngest system, Mission Bay, the reverse was true (natural: 113 000 vs created: 28 000 ind m -2). Similar species numbers were recorded from the created and adjacent natural marshes. Insects, especially chironomids, dolichopodids, and heleids, as well as the naidid oligochaete, Paranais litoralis, characterize early successional stages. Enchytraeid and tubificid oligochaetes reflect later succession evident in natural and older created marshes. Sediment organic matter (both combustible and below-ground plant biomass) was the environmental variable most commonly associated with densities of various macrofaunal taxa. These relationships were generally negative in the natural marshes and positive in the created marshes. Within-bay comparisons of macrofauna from natural Salicornia- vs Spartina -vegetated habitat in San Diego and Mission Bays revealed lower macrofaunal density (San Diego Bay only), proportionally fewer oligochaetes and more insects, and no differences in species richness in the Salicornia habitat. The oldest created Salicornia marsh (San Diego Bay) exhibited an assemblage intermediate in composition between those of the natural Salicornia- and Spartina- vegetated marshes. These results suggest: (a) faunal recovery following Salicornia marsh creation can require 10 or more years, (b) high macrofaunal variability among bays requires marsh creation reference site selection from within the same bay, and (c) Spartina -based research should not be used for Salicornia marsh management decisions.

Suprabenthic assemblages from the Capbreton area (SE Bay of Biscay). Faunal recovery after a canyon turbidity disturbance

NASA Astrophysics Data System (ADS)

Frutos, Inmaculada; Sorbe, Jean Claude

2017-12-01

In the Capbreton area, suprabenthic assemblages were sampled with a sledge towed over the bottom, at different sites located within the upper part of a 'gouf-type' canyon (8 hauls between 642 m and 797 m, on the axis of the thalweg or on flat perched flank terraces such as site K), on the northern adjacent open slope (2 hauls between 500 and 567 m) and on the northern adjacent shelf margin (2 hauls between 151 m and 158 m). A multivariate analysis carried on the faunal data discriminated different assemblages in this area: a near-canyon shelf assemblage (55 species, mainly amphipods and decapods; 3496 ind./100 m2, 40% mysids; dominant species: Nyctiphanes couchii, Leptomysis gracilis, Weswoodilla rectirostris, Anchialina agilis, Scopelocheirus hopei and Philocheras bispinosus); an open slope assemblage (111 species, mainly amphipods and isopods; 249 ind./100 m2, 36% amphipods; dominant species: Disconectes phalangium, Munnopsurus atlanticus and Boreomysis arctica); a canyon E assemblage (129 species, mainly amphipods, mysids and cumaceans; 1172 ind./100 m2, 58% amphipods; dominant species: Melphidippa sp. B, Chelator insignis); a canyon E' assemblage (107 species, mainly amphipods and mysids; 507 ind./100 m2, 73% amphipods; dominant species: Cleonardopsis carinata, Bonnierella abyssorum, Rhachotropis caeca and Arcturopsis giardi); and a temporary canyon assemblage at site K (34 species, mainly amphipods and mysids; 899 ind./100 m2, 85% amphipods; dominant species: Tmetomyx similis, Caeconyx caeculus, Nebalia sp. A and Cleonardopsis carinata). Site K was sampled only four months after a turbidity event, detected on sediment cores (18 cm thick Bouma sequence) taken during the same cruise and triggered by the violent storm ('ouragan Martin', wind up to 200 km/h) which affected the French Atlantic coast on 27 December 1999. The corresponding suprabenthic assemblage showed evidence of deep structural changes after this catastrophic event, characterized by relative low values of species richness and diversity indices and by the exceptional dominance of opportunistic pioneer colonizers such as the scavenger Tmetonyx similis (61% of total density). Partial assemblage recovery was noticed 18 months after the turbidite deposition, attested by higher values of structural indices and by the inclusion of the corresponding sample within the climax canyon assemblage cluster.

Seafloor massive sulfide deposits support unique megafaunal assemblages: Implications for seabed mining and conservation.

PubMed

Boschen, Rachel E; Rowden, Ashley A; Clark, Malcolm R; Pallentin, Arne; Gardner, Jonathan P A

2016-04-01

Mining of seafloor massive sulfides (SMS) is imminent, but the ecology of assemblages at SMS deposits is poorly known. Proposed conservation strategies include protected areas to preserve biodiversity at risk from mining impacts. Determining site suitability requires biological characterisation of the mine site and protected area(s). Video survey of a proposed mine site and protected area off New Zealand revealed unique megafaunal assemblages at the mine site. Significant relationships were identified between assemblage structure and environmental conditions, including hydrothermal features. Unique assemblages occurred at both active and inactive chimneys and are particularly at risk from mining-related impacts. The occurrence of unique assemblages at the mine site suggests that the proposed protected area is insufficient alone and should instead form part of a network. These results provide support for including hydrothermally active and inactive features within networks of protected areas and emphasise the need for quantitative survey data of proposed sites. Copyright © 2016 The Authors. Published by Elsevier Ltd.. All rights reserved.

Meiofaunal assemblages associated with native and non-indigenous macroalgae

NASA Astrophysics Data System (ADS)

Veiga, Puri; Sousa-Pinto, Isabel; Rubal, Marcos

2016-07-01

Meiofauna is a useful tool to detect effects of different disturbances; however, its relevance in the frame of biological invasions has been almost fully neglected. Meiofaunal assemblages associated with the invasive macroalga Sargassum muticum were studied and compared with those associated with two native macroalgae (Bifurcaria bifurcata and Chondrus crispus). We used a linear mixed model to determine the influence of habitat size (i.e. macroalgal biomass) in shaping meiofaunal assemblages. Results showed that habitat size (i.e. macroalgal biomass) shaped meiofaunal assemblages influencing its abundance, richness and structure. However, the identity of macroalga (i.e. species) appears also to play a significant role, particularly the differences of complexity among the studied species may shape their meiofaunal assemblages. Finally, the invasive macroalga appears to influence positively species richness. Our results highlight the need of including different faunal components to achieve a comprehensive knowledge on effects of invasive macroalgae and that meiofaunal assemblages may be a valuable tool to examine them.

Pliocene large-mammal assemblages from northern Chad: sampling and ecological structure

NASA Astrophysics Data System (ADS)

Fara, Emmanuel; Likius, Andossa; Mackaye, Hassane T.; Vignaud, Patrick; Brunet, Michel

2005-11-01

Numerous Pliocene large-mammal assemblages have been discovered in Chad over the last decade. They offer a unique opportunity to understand the settings in which important chapters of Hominid evolution took place in Central Africa. However, it is crucial to first investigate both sampling and taxonomic homogeneity for these Chadian assemblages because they occur over large sectors in a sandy desert that offers virtually no stratigraphic section. Using cluster analysis and ordination techniques, we show that the three Pliocene sectors from Chad are homogeneous and adequate sampling units. Previous stable isotope analyses on these assemblages have indicated that the environment became richer in C4 plants between approximately 5.3 and 3.5 3 Ma. To test whether this environmental change has affected the structure of palaeo-communities, we assigned body mass, trophic and locomotor eco-variables to mammal species from the three sectors. Statistical analysis shows that the overall ecological structure of the assemblages is not linked with the opening of the plant cover, and eco-variables show no temporal trend from the oldest sector to the youngest. For example, there is no significant change in the relative diversity of grazing and browsing taxa, although mixed feeders are less diversified in the youngest sector than in the preceding one. This pattern apparently does not result from potential biases such as methodological artefacts or taphonomic imprint. Instead, it seems that local heterogeneous environmental factors have played a major role in shaping the ecological spectrum of Chadian mammal palaeo-communities during the Pliocene.

Mesopredator trophodynamics on thermally stressed coral reefs

NASA Astrophysics Data System (ADS)

Hempson, Tessa N.; Graham, Nicholas A. J.; MacNeil, M. Aaron; Hoey, Andrew S.; Almany, Glenn R.

2018-03-01

Ecosystems are becoming vastly modified through disturbance. In coral reef ecosystems, the differential susceptibility of coral taxa to climate-driven bleaching is predicted to shift coral assemblages towards reefs with an increased relative abundance of taxa with high thermal tolerance. Many thermally tolerant coral species are characterised by low structural complexity, with reduced habitat niche space for the small-bodied coral reef fishes on which piscivorous mesopredators feed. This study used a patch reef array to investigate the potential impacts of climate-driven shifts in coral assemblages on the trophodynamics of reef mesopredators and their prey communities. The `tolerant' reef treatment consisted only of coral taxa of low susceptibility to bleaching, while `vulnerable' reefs included species of moderate to high thermal vulnerability. `Vulnerable' reefs had higher structural complexity, and the fish assemblages that established on these reefs over 18 months had higher species diversity, abundance and biomass than those on `tolerant' reefs. Fish assemblages on `tolerant' reefs were also more strongly influenced by the introduction of a mesopredator ( Cephalopholis boenak). Mesopredators on `tolerant' reefs had lower lipid content in their muscle tissue by the end of the 6-week experiment. Such sublethal energetic costs can compromise growth, fecundity, and survivorship, resulting in unexpected population declines in long-lived mesopredators. This study provides valuable insight into the altered trophodynamics of future coral reef ecosystems, highlighting the potentially increased vulnerability of reef fish assemblages to predation as reef structure declines, and the cost of changing prey availability on mesopredator condition.

Simplification of arboreal marsupial assemblages in response to increasing urbanization.

PubMed

Isaac, Bronwyn; White, John; Ierodiaconou, Daniel; Cooke, Raylene

2014-01-01

Arboreal marsupials play an essential role in ecosystem function including regulating insect and plant populations, facilitating pollen and seed dispersal and acting as a prey source for higher-order carnivores in Australian environments. Primarily, research has focused on their biology, ecology and response to disturbance in forested and urban environments. We used presence-only species distribution modelling to understand the relationship between occurrences of arboreal marsupials and eco-geographical variables, and to infer habitat suitability across an urban gradient. We used post-proportional analysis to determine whether increasing urbanization affected potential habitat for arboreal marsupials. The key eco-geographical variables that influenced disturbance intolerant species and those with moderate tolerance to disturbance were natural features such as tree cover and proximity to rivers and to riparian vegetation, whereas variables for disturbance tolerant species were anthropogenic-based (e.g., road density) but also included some natural characteristics such as proximity to riparian vegetation, elevation and tree cover. Arboreal marsupial diversity was subject to substantial change along the gradient, with potential habitat for disturbance-tolerant marsupials distributed across the complete gradient and potential habitat for less tolerant species being restricted to the natural portion of the gradient. This resulted in highly-urbanized environments being inhabited by a few generalist arboreal marsupial species. Increasing urbanization therefore leads to functional simplification of arboreal marsupial assemblages, thus impacting on the ecosystem services they provide.

Simplification of Arboreal Marsupial Assemblages in Response to Increasing Urbanization

PubMed Central

Isaac, Bronwyn; White, John; Ierodiaconou, Daniel; Cooke, Raylene

2014-01-01

Arboreal marsupials play an essential role in ecosystem function including regulating insect and plant populations, facilitating pollen and seed dispersal and acting as a prey source for higher-order carnivores in Australian environments. Primarily, research has focused on their biology, ecology and response to disturbance in forested and urban environments. We used presence-only species distribution modelling to understand the relationship between occurrences of arboreal marsupials and eco-geographical variables, and to infer habitat suitability across an urban gradient. We used post-proportional analysis to determine whether increasing urbanization affected potential habitat for arboreal marsupials. The key eco-geographical variables that influenced disturbance intolerant species and those with moderate tolerance to disturbance were natural features such as tree cover and proximity to rivers and to riparian vegetation, whereas variables for disturbance tolerant species were anthropogenic-based (e.g., road density) but also included some natural characteristics such as proximity to riparian vegetation, elevation and tree cover. Arboreal marsupial diversity was subject to substantial change along the gradient, with potential habitat for disturbance-tolerant marsupials distributed across the complete gradient and potential habitat for less tolerant species being restricted to the natural portion of the gradient. This resulted in highly-urbanized environments being inhabited by a few generalist arboreal marsupial species. Increasing urbanization therefore leads to functional simplification of arboreal marsupial assemblages, thus impacting on the ecosystem services they provide. PMID:24608165

Coastal urban lighting has ecological consequences for multiple trophic levels under the sea.

PubMed

Bolton, D; Mayer-Pinto, M; Clark, G F; Dafforn, K A; Brassil, W A; Becker, A; Johnston, E L

2017-01-15

Urban land and seascapes are increasingly exposed to artificial lighting at night (ALAN), which is a significant source of light pollution. A broad range of ecological effects are associated with ALAN, but the changes to ecological processes remain largely unstudied. Predation is a key ecological process that structures assemblages and responds to natural cycles of light and dark. We investigated the effect of ALAN on fish predatory behaviour, and sessile invertebrate prey assemblages. Over 21days fish and sessile assemblages were exposed to 3 light treatments (Day, Night and ALAN). An array of LED spotlights was installed under a wharf to create the ALAN treatments. We used GoPro cameras to film during the day and ALAN treatments, and a Dual frequency IDentification SONar (DIDSON) to film during the night treatments. Fish were most abundant during unlit nights, but were also relatively sedentary. Predatory behaviour was greatest during the day and under ALAN than at night, suggesting that fish are using structures for non-feeding purposes (e.g. shelter) at night, but artificial light dramatically increases their predatory behaviour. Altered predator behaviour corresponded with structural changes to sessile prey assemblages among the experimental lighting treatments. We demonstrate the direct effects of artificial lighting on fish behaviour and the concomitant indirect effects on sessile assemblage structure. Current and future projected use of artificial lights has the potential to significantly affect predator-prey interactions in marine systems by altering habitat use for both predators and prey. However, developments in lighting technology are a promising avenue for mitigation. This is among the first empirical evidence from the marine system on how ALAN can directly alter predation, a fundamental ecosystem process, and have indirect trophic consequences. Copyright © 2016 Elsevier B.V. All rights reserved.

Microbial decomposition is highly sensitive to leaf litter emersion in a permanent temperate stream.

PubMed

Mora-Gómez, Juanita; Duarte, Sofia; Cássio, Fernanda; Pascoal, Cláudia; Romaní, Anna M

2018-04-15

Drought frequency and intensity in some temperate regions are forecasted to increase under the ongoing global change, which might expose permanent streams to intermittence and have severe repercussions on stream communities and ecosystem processes. In this study, we investigated the effect of drought duration on microbial decomposition of Populus nigra leaf litter in a temperate permanent stream (Oliveira, NW Portugal). Specifically, we measured the response of the structural (assemblage composition, bacterial and fungal biomass) and functional (leaf litter decomposition, extracellular enzyme activities (EEA), and fungal sporulation) parameters of fungal and bacterial communities on leaf litter exposed to emersion during different time periods (7, 14 and 21d). Emersion time affected microbial assemblages and litter decomposition, but the response differed among variables. Leaf decomposition rates and the activity of β-glucosidase, cellobiohydrolase and phosphatase were gradually reduced with increasing emersion time, while β-xylosidase reduction was similar when emersion last for 7 or more days, and the phenol oxidase reduction was similar at 14 and 21days of leaf emersion. Microbial biomass and fungal sporulation were reduced after 21days of emersion. The structure of microbial assemblages was affected by the duration of the emersion period. The shifts in fungal assemblages were correlated with a decreased microbial capacity to degrade lignin and hemicellulose in leaf litter exposed to emersion. Additionally, some resilience was observed in leaf litter mass loss, bacterial biomass, some enzyme activities and structure of fungal assemblages. Our study shows that drought can strongly alter structural and functional aspects of microbial decomposers. Therefore, the exposure of leaf litter to increasing emersion periods in temperate streams is expected to affect decomposer communities and overall decomposition of plant material by decelerating carbon cycling in streams. Copyright © 2017 Elsevier B.V. All rights reserved.

Spatial and seasonal variations of fish assemblages in mangrove creek systems in Zanzibar (Tanzania)

NASA Astrophysics Data System (ADS)

Mwandya, Augustine W.; Gullström, Martin; Andersson, Mathias H.; Öhman, Marcus C.; Mgaya, Yunus D.; Bryceson, Ian

2010-11-01

Spatial and seasonal variations of fish assemblage composition were studied in three non-estuarine mangrove creeks of Zanzibar (Tanzania). Fish were collected monthly for one year at three sites (lower, intermediate and upper reaches) in each creek using a seine net (each haul covering 170 m 2). Density, species number and diversity of fish were all higher at sites with dense cover of macrophytes (seagrass and macroalgae) than over unvegetated sandy sites. In general, fish assemblages mainly comprised juveniles of a few abundant taxa, e.g. Mugil cephalus, Mugilidae spp. and Leiognathus equulus at sites with mud substratum and Gerres oyena, Lethrinus harak and Sillago sihama at sites dominated by macrophytes. Multivariate analyses revealed significant separations in fish assemblage composition within the two creeks where the bottom substratum differed among sites. Overall, season seemed to have little effect on density, species number, diversity index ( H') and assemblage structure of fish. Water condition variables were also relatively stable across the season, although a short-term fluctuation primarily induced by decreased salinity, occurred during the heavy rains in April and May. Fish assemblage structure was not significantly affected by any of the abiotic factors tested. However, significant regressions were found between the other fish variables and environmental variables, but since these associations were mostly species-specific and generally inconsistent, we suggest that the overall distribution patterns of fish were mainly an effect of particular substrate preferences of fish species rather than contemporary water conditions.

Fish assemblages in oxbow lakes relative to connectivity with the Mississippi River

USGS Publications Warehouse

Miranda, L.E.

2005-01-01

The alluvial valley of the lower Mississippi River contains hundreds of fluvial lakes that are periodically connected to the river during high water, although the frequency, duration, and timing of the connections vary. To help design plans to restore and preserve fish assemblages in these alluvial lakes, this investigation tested whether predictable patterns in lake fish assemblages were linked to the level of connectivity with the river. Results suggested that connectivity played an important role in structuring fish assemblages and that it was correlated with variables such as lake size, depth, distance from the river, and age, which exhibit a continuum of predictable features as the river migrates away from abandoned channels. Annual floods homogenize the floodplain and promote connectivity to various degrees, allowing for fish exchanges between river and floodplain that directly affect fish assemblages. The major physical changes linked to reduced connectivity are loss of depth and area, which in turn affect a multiplicity of abiotic and biotic features that indirectly affect community structure. In advanced stages of disconnection, fish assemblages in oxbow lakes are expected to include largely species that thrive in turbid, shallow systems with few predators and low oxygen content. When the river flowed without artificial restraint, oxbow lakes were created at the rate of 13-15 per century. At present, no or few oxbow lakes are being formed, and as existing lakes age, they are becoming shallower, smaller, and progressively more disconnected from the river. Given that modifications to the Mississippi River appear to be irreversible, conservation of this resource requires maintenance of existing lakes at a wide range of aging phases that provide diverse habitats and harbor distinct species assemblages.

Experimental effects of grazers on autotrophic species assemblages across a nitrate gradient in Florida springs

USDA-ARS?s Scientific Manuscript database

Springs face accelerated degradation of ecosystem structure, namely in the form of autotrophic species assemblage shifts from submerged vascular macrophytes to benthic filamentous algae. Increasing nitrate concentrations have been cited as a primary driver of this shift and numeric nutrient criteria...

LANDSCAPE CHARACTER AND FISH ASSEMBLAGE STRUCTURE AND FUNCTION IN WESTERN LAKE SUPERIOR STREAMS: GENERAL RELATIONSHIPS AND IDENTIFICATION OF THRESHOLDS

EPA Science Inventory

As part of a comparative watershed project investigating land cover/land use disturbance gradients for streams in the western Lake Suerior Basin, we wanted to determine the influence of hydrogeomorphic region, forest fragmentation, and watershed storage on fish assemblage structu...

The Role of Regional Factors in Structuring Ouachita Mountain Stream Assemblages

Treesearch

Lance R. Williams; Christopher M. Taylor; Melvin L. Warren; J. Alan Clingenpeel

2004-01-01

Abstract - We used Basin Area Stream Survey data from the USDA Forest Service, Ouachita National Forest to evaluate the relationship between regional fish and macroinvertebrate assemblages and environmental variability (both natural and anthropogenic). Data were collected for three years (1990-1992) from six hydrologically variable stream systems in...

Assemblage organization in stream fishes: effects of environmental variation and interspecific interactions

USGS Publications Warehouse

Grossman, G.D.; Ratajczak, R.E.; Crawford, M. M.; Freeman, Mary C.

1998-01-01

We assessed the relative importance of environmental variation, interspecific competition for space, and predator abundance on assemblage structure and microhabitat use in a stream fish assemblage inhabiting Coweeta Creek, North Carolina, USA. Our study encompassed a ten year time span (1983-1992) and included some of the highest and lowest flows in the last 58 years. We collected 16 seasonal samples which included data on: 1) habitat availability (total and microhabitat) and microhabitat diversity, 2) assemblage structure (i.e., the number and abundances of species comprising a subset of the community), and 3) microhabitat use and overlap. We classified habitat availability data on the basis of year, season, and hydrologic period. Hydrologic period (i.e., pre-drought [PR], drought [D], and post-drought [PO]) represented the temporal location of a sample with respect to a four-year drought that occurred during the study. Hydrologic period explained a greater amount of variance in habitat availability data than either season or year. Total habitat availability was significantly greater during PO than in PR or D, although microhabitat diversity did not differ among either seasons or hydrologic periods. There were significantly fewer high-flow events (i.e., > 2.1 m3/s) during D than in either PR or PO periods. We observed a total of 16 species during our investigation, and the total number of species was significantly higher in D than in PR samples. Correlation analyses between the number of species present (total and abundant species) and environmental data yielded limited results, although the total number of species was inversely correlated with total habitat availability. A cluster analysis grouped assemblage structure samples by hydrologic period rather than season or year, supporting the contention that variation in annual flow had a strong impact on this assemblage. The drought had little effect on the numerical abundance of benthic species in this assemblage; however, a majority of water-column species increased in abundance. The increased abundances or water-column species may have been related to the decrease in high flow events observed during the D. Such high flow events are known to cause mortality in stream fishes. Microhabitat use data showed that species belonged to one of three microhabitat guilds: benthic, lower water-column, and mid-water-column. In general, species within the same guild did not exhibit statistically distinguishable patterns of microhabitat use, and most significant differences occurred between members of different guilds. However, lower water-column guild species frequently were not separable from all members of either benthic or mid-water-column guilds. Variations in the abundance of potential competitors or predators did not produce strong shifts in microhabitat use by assemblage members. Predators were present in the site in only 9 of 16 seasonal samples and never were abundant (maximum number observed per day was 2). In conclusion, our results demonstrate that variability in both mean and peak flows had a much stronger effect on the structure and use of spatial resources within this assemblage than either interspecific competition for space or predation. Consequently, we suspect that the patterns in both assemblage structure and resource use displayed by fishes in Coweeta Creek arose from the interaction between environmental variation and species-specific evolutionary constraints on behavior, morphology and physiology.

The effects of anthropogenic land cover change on pollen-vegetation relationships in the American Midwest

USGS Publications Warehouse

Kujawa, Ellen Ruth; Goring, Simon; Dawson, Andria; Calcote, Randy; Grimm, Eric; Hotchkiss, Sara C.; Jackson, Stephen T.; Lynch, Elizabeth A.; McLachlan, Jason S.; St-Jacques, Jeannine-Marie; Umbanhowar, Charles; Williams, John W.

2016-01-01

Fossil pollen assemblages provide information about vegetation dynamics at time scales ranging from centuries to millennia. Pollen-vegetation models and process-based models of dispersal typically assume stable relationships between source vegetation and corresponding pollen in surface sediments, as well as stable parameterizations of dispersal and productivity. These assumptions, however, are largely unevaluated. This paper reports a test of the stability of pollen-vegetation relationships using vegetation and pollen data from the Midwestern region of the United States, during a period of large changes in land use and vegetation driven by Euro-American settlement. We compared a dataset of pollen records for the early settlement-era with three other datasets of pollen and forest composition for two time periods: before Euro-American settlement, and the late 20th century. Results from generalized linear models for thirteen genera indicate that pollen-vegetation relationships significantly differ (p < 0.05) between pre-settlement and the modern era for several genera: Fagus, Betula, Tsuga, Quercus, Pinus, and Picea. The estimated pollen source radius for the 8 km gridded vegetation data and associated pollen data is 25–85 km, consistent with prior studies using similar methods and spatial resolutions.Hence, the rapid changes in land cover associated with the Anthropocene affect the accuracy of ecological predictions for both the future and the past. In the Anthropocene, paleoecology should move beyond the assumption that pollen-vegetation relationships are stable over time. Multi-temporal calibration datasets are increasingly possible and enable paleoecologists to better understand the complex processes governing pollen-vegetation relationships through space and time.

Seasonal Distribution and Diversity of Ground Arthropods in Microhabitats Following a Shrub Plantation Age Sequence in Desertified Steppe

PubMed Central

Liu, Rentao; Zhu, Fan; Song, Naiping; Yang, Xinguo; Chai, Yongqing

2013-01-01

In desertified regions, shrub-dominated patches are important microhabitats for ground arthropod assemblages. As shrub age increases, soil, vegetation and microbiological properties can change remarkably and spontaneously across seasons. However, relatively few studies have analyzed how ground arthropods respond to the microhabitats created by shrubs of different plantation ages across seasons. Using 6, 15, 24 and 36 year-old plantations of re-vegetated shrubs (Caragana koushinskii) in the desert steppe of northwestern China as a model system, we sampled ground arthropod communities using a pitfall trapping method in the microhabitats under shrubs and in the open areas between shrubs, during the spring, summer and autumn. The total ground arthropod assemblage was dominated by Carabidae, Melolonthidae, Curculionidae, Tenebrionidae and Formicidae that were affected by plantation age, seasonal changes, or the interaction between these factors, with the later two groups also influenced by microhabitat. Overall, a facilitative effect was observed, with more arthropods and a greater diversity found under shrubs as compared to open areas, but this was markedly affected by seasonal changes. There was a high degree of similarity in arthropod assemblages and diversity between microhabitats in summer and autumn. Shrub plantation age significantly influenced the distribution of the most abundant groups, and also the diversity indices of the ground arthropods. However, there was not an overall positive relationship between shrub age and arthropod abundance, richness or diversity index. The influence of plantation age on arthropod communities was also affected by seasonal changes. From spring through summer to autumn, community indices of ground arthropods tended to decline, and a high degree of similarity in these indices (with fluctuation) was observed among different ages of shrub plantation in autumn. Altogether the recovery of arthropod communities was markedly affected by seasonal variability, and they demonstrated distinctive communal fingerprints in different microhabitats for each plantation age stage. PMID:24250746

Effects of floods on fish assemblages in an intermittent prairie stream

USGS Publications Warehouse

Franssen, N.R.; Gido, K.B.; Guy, C.S.; Tripe, J.A.; Shrank, S.J.; Strakosh, T.R.; Bertrand, K.N.; Franssen, C.M.; Pitts, K.L.; Paukert, C.P.

2006-01-01

1. Floods are major disturbances to stream ecosystems that can kill or displace organisms and modify habitats. Many studies have reported changes in fish assemblages after a single flood, but few studies have evaluated the importance of timing and intensity of floods on long-term fish assemblage dynamics. 2. We used a 10-year dataset to evaluate the effects of floods on fishes in Kings Creek, an intermittent prairie stream in north-eastern, Kansas, U.S.A. Samples were collected seasonally at two perennial headwater sites (1995-2005) and one perennial downstream flowing site (1997-2005) allowing us to evaluate the effects of floods at different locations within a watershed. In addition, four surveys during 2003 and 2004 sampled 3-5 km of stream between the long-term study sites to evaluate the use of intermittent reaches of this stream. 3. Because of higher discharge and bed scouring at the downstream site, we predicted that the fish assemblage would have lowered species richness and abundance following floods. In contrast, we expected increased species richness and abundance at headwater sites because floods increase stream connectivity and create the potential for colonisation from downstream reaches. 4. Akaike Information Criteria (AIC) was used to select among candidate regression models that predicted species richness and abundance based on Julian date, time since floods, season and physical habitat at each site. At the downstream site, AIC weightings suggested Julian date was the best predictor of fish assemblage structure, but no model explained >16% of the variation in species richness or community structure. Variation explained by Julian date was primarily attributed to a long-term pattern of declining abundance of common species. At the headwater sites, there was not a single candidate model selected to predict total species abundance and assemblage structure. AIC weightings suggested variation in assemblage structure was associated with either Julian date or local habitat characteristics. 5. Fishes rapidly colonised isolated or dry habitats following floods. This was evidenced by the occurrence of fishes in intermittent reaches and the positive association between maximum daily discharge and colonisation events at both headwater sites. 6. Our study suggests floods allow dispersal into intermittent habitats with little or no downstream displacement of fishes. Movement of fishes among habitats during flooding highlights the importance of maintaining connectivity of stream networks of low to medium order prairie streams. ?? 2006 The Authors.

Understanding the effects of predictability, duration, and spatial pattern of drying on benthic invertebrate assemblages in two contrasting intermittent streams

PubMed Central

von Schiller, Daniel; Barberá, Gonzalo G.; Díaz, Angela M.; Arce, Maria Isabel; del Campo, Rubén; Tockner, Klement

2018-01-01

In the present study, we examined the effects of different drying conditions on the composition, structure and function of benthic invertebrate assemblages. We approached this objective by comparing invertebrate assemblages in perennial and intermittent sites along two intermittent Mediterranean streams with contrasting predictability, duration, and spatial patterns of drying: Fuirosos (high predictability, short duration, downstream drying pattern) and Rogativa (low predictability, long duration, patchy drying pattern). Specifically, we quantified the contribution of individual taxa to those differences, the degree of nestedness, and shifts in the composition, structure and function of benthic invertebrate assemblages along flow intermittence gradients. We observed greater effects of drying on the benthic invertebrate composition in Fuirosos than in Rogativa, resulting in a higher dissimilarity of assemblages between perennial and intermittent sites, as well as a lower degree of nestedness. Furthermore, a higher number of biotic metrics related to richness, abundance and biological traits were significantly different between perennial and intermittent sites in Fuirosos, despite a shorter dry period compared to Rogativa. At the same time, slightly different responses were detected during post-drying (autumn) than pre-drying (spring) conditions in this stream. In Rogativa, shifts in benthic invertebrate assemblages along increasing gradients of flow intermittence were found for three metrics (Ephemeroptera, Plecoptera and Trichoptera (EPT) and Odonata, Coleoptera and Heteroptera (OCH) abundances and aerial active dispersal. Furthermore, we demonstrated that combined gradients of dry period duration and distance to nearest perennial reach can generate complex, and different, responses of benthic invertebrate assemblages, depending on the flow intermittence metric. Our study advances the notion that special attention should be paid to the predictability, duration and spatial patterns of drying in intermittent streams in order to disentangle the effects of drying on benthic invertebrate assemblages, in particular in areas subject to high spatial heterogeneity and temporal variability in drying conditions. PMID:29590140

Phytoplankton Assemblage Characteristics in Recurrently Fluctuating Environments

PubMed Central

Roelke, Daniel L.; Spatharis, Sofie

2015-01-01

Annual variations in biogeochemical and physical processes can lead to nutrient variability and seasonal patterns in phytoplankton productivity and assemblage structure. In many coastal systems river inflow and water exchange with the ocean varies seasonally, and alternating periods can arise where the nutrient most limiting to phytoplankton growth switches. Transitions between these alternating periods can be sudden or gradual and this depends on human activities, such as reservoir construction and interbasin water transfers. How such activities might influence phytoplankton assemblages is largely unknown. Here, we employed a multispecies, multi-nutrient model to explore how nutrient loading switching mode might affect characteristics of phytoplankton assemblages. The model is based on the Monod-relationship, predicting an instantaneous growth rate from ambient inorganic nutrient concentrations whereas the limiting nutrient at any given time was determined by Liebig’s Law of the Minimum. Our simulated phytoplankton assemblages self-organized from species rich pools over a 15-year period, and only the surviving species were considered as assemblage members. Using the model, we explored the interactive effects of complementarity level in trait trade-offs within phytoplankton assemblages and the amount of noise in the resource supply concentrations. We found that the effect of shift from a sudden resource supply transition to a gradual one, as observed in systems impacted by watershed development, was dependent on the level of complementarity. In the extremes, phytoplankton species richness and relative overyielding increased when complementarity was lowest, and phytoplankton biomass increased greatly when complementarity was highest. For low-complementarity simulations, the persistence of poorer-performing phytoplankton species of intermediate R*s led to higher richness and relative overyielding. For high-complementarity simulations, the formation of phytoplankton species clusters and niche compression enabled higher biomass accumulation. Our findings suggest that an understanding of factors influencing the emergence of life history traits important to complementarity is necessary to predict the impact of watershed development on phytoplankton productivity and assemblage structure. PMID:25799563

Restoration treatments in urban park forests drive long-term changes in vegetation trajectories.

PubMed

Johnson, Lea R; Handel, Steven N

2016-04-01

Municipalities are turning to ecological restoration of urban forests as a measure to improve air quality, ameliorate urban heat island effects, improve storm water infiltration, and provide other social and ecological benefits. However, community dynamics following urban forest restoration treatments are poorly documented. This study examines the long-term effects of ecological restoration undertaken in New York City, New York, USA, to restore native forest in urban park natural areas invaded by woody non-native plants that are regional problems. In 2009 and 2010, we sampled vegetation in 30 invaded sites in three large public parks that were restored 1988-1993, and 30 sites in three large parks that were similarly invaded but had not been restored. Data from these matched plots reveal that the restoration treatment achieved its central goals. After 15-20 years, invasive species removal followed by native tree planting resulted in persistent structural and compositional shifts, significantly lower invasive species abundance, a more complex forest structure, and greater native tree recruitment. Together, these findings indicate that successional trajectories of vegetation dynamics have diverged between restored forests and invaded forests that were not restored. In addition, the data suggest that future composition of these urban forest patches will be novel assemblages. Restored and untreated sites shared a suite of shade-intolerant, quickly-growing tree species that colonize disturbed sites, indicating that restoration treatments created sites hospitable for germination and growth of species adapted to high light conditions and disturbed soils. These findings yield an urban perspective on the use of succession theory in ecological restoration. Models of ecological restoration developed in more pristine environments must be modified for use in cities. By anticipating both urban disturbances and ecological succession, management of urban forest patches can be adjusted to better predict and direct long-term outcomes. An urban approach to ecological restoration must use realistic, flexible targets to preserve and enhance urban biodiversity for both short-term benefits and long-term sustainability.

Flourish or flush: effects of simulated extreme rainfall events on Sphagnum-dwelling testate amoebae in a subarctic bog (Abisko, Sweden).

PubMed

Tsyganov, Andrey N; Keuper, Frida; Aerts, Rien; Beyens, Louis

2013-01-01

Extreme precipitation events are recognised as important drivers of ecosystem responses to climate change and can considerably affect high-latitude ombrotrophic bogs. Therefore, understanding the relationships between increased rainfall and the biotic components of these ecosystems is necessary for an estimation of climate change impacts. We studied overall effects of increased magnitude, intensity and frequency of rainfall on assemblages of Sphagnum-dwelling testate amoebae in a field climate manipulation experiment located in a relatively dry subarctic bog (Abisko, Sweden). The effects of the treatment were estimated using abundance, species diversity and structure of living and empty shell assemblages of testate amoebae in living and decaying layers of Sphagnum. Our results show that increased rainfall reduced the mean abundance and species richness of living testate amoebae. Besides, the treatment affected species structure of both living and empty shell assemblages, reducing proportions of hydrophilous species. The effects are counterintuitive as increased precipitation-related substrate moisture was expected to have opposite effects on testate amoeba assemblages in relatively dry biotopes. Therefore, we conclude that other rainfall-related factors such as increased infiltration rates and frequency of environmental disturbances can also affect testate amoeba assemblages in Sphagnum and that hydrophilous species are particularly sensitive to variation in these environmental variables.

Seasonal Dynamics of Fish Assemblages on Breakwaters and Natural Rocky Reefs in a Temperate Estuary: Consistent Assemblage Differences Driven by Sub-Adults

PubMed Central

Fowler, Ashley M.; Booth, David J.

2013-01-01

Development of infrastructure around cities is rapidly increasing the amount of artificial substrate (termed artificial reef, ‘AR’) in coastal marine habitats. However, effects of ARs on marine communities remain unknown, because it is unclear whether ARs can maintain similar communities to natural reefs. We investigated whether well-established (> 30 years old) breakwaters could consistently approximate fish assemblages on interspersed rocky reefs in a temperate estuary over 6 consecutive seasons using regular visual surveys between June 2009 (winter) and November 2010 (spring). We examined whether assemblage differences between reef types were driven by differences in juvenile recruitment, or were related to differences in older life-stages. Assemblages on both reef types were dominated by juveniles (61% of individuals) and sub-adults (34% of individuals). Seasonal fluctuations in assemblage parameters (species richness, diversity, sub-adult abundance) were similar between reef types, and levels of species diversity and assemblage composition were generally comparable. However, abundance and species richness were consistently higher (1.9-7.6 and 1.3-2.6 times, respectively) on breakwaters. These assemblage differences could not be explained by differences in juvenile recruitment, with seasonal patterns of recruitment and juvenile species found to be similar between reef types. In contrast, abundances of sub-adults were consistently higher (1.1-12 times) at breakwaters, and assemblage differences appeared to be driven by this life-stage. Our results indicate that breakwaters in temperate estuaries are capable of supporting abundant and diverse fish assemblages with similar recruitment process to natural reefs. However, breakwaters may not approximate all aspects of natural assemblage structure, with differences maintained by a single-life stage in some cases. PMID:24086634

Aquatic insect assemblages associated with subalpine stream segment types in relict glaciated headwaters

USGS Publications Warehouse

Kubo, Joshua S.; Torgersen, Christian E.; Bolton, Susan M.; Weekes, Anne A.; Gara, Robert I.

2013-01-01

1. Aquatic habitats and biotic assemblages in subalpine headwaters are sensitive to climate and human impacts. Understanding biotic responses to such perturbations and the contribution of high-elevation headwaters to riverine biodiversity requires the assessment of assemblage composition among habitat types. We compared aquatic insect assemblages among headwater stream segment types in relict glaciated subalpine basins in Mt. Rainier National Park, Washington, USA. 2. Aquatic insects were collected during summer and autumn in three headwater basins. In each basin, three different stream segment types were sampled: colluvial groundwater sources, alluvial lake inlets, and cascade-bedrock lake outlets. Ward's hierarchical cluster analysis revealed high β diversity in aquatic insect assemblages, and non-metric multidimensional scaling indicated that spatial and temporal patterns in assemblage composition differed among headwater stream segment types. Aquatic insect assemblages showed more fidelity to stream segment types than to individual basins, and the principal environmental variables associated with assemblage structure were temperature and substrate. 3. Indicator species analyses identified specific aquatic insects associated with each stream segment type. Several rare and potentially endemic aquatic insect taxa were present, including the recently described species, Lednia borealis (Baumann and Kondratieff). 4. Our results indicate that aquatic insect assemblages in relict glaciated subalpine headwaters were strongly differentiated among stream segment types. These results illustrate the contribution of headwaters to riverine biodiversity and emphasise the importance of these habitats for monitoring biotic responses to climate change. Monitoring biotic assemblages in high-elevation headwaters is needed to prevent the potential loss of unique and sensitive biota.

Effects of reconstruction of a pre-European vertebrate assemblage on ground-dwelling arachnids in arid Australia.

PubMed

Silvey, Colin J; Hayward, Matthew W; Gibb, Heloise

2015-06-01

Species loss can result in changes in assemblage structure and ecosystem function through ecological cascades. Australian vertebrate assemblages changed significantly following European colonisation, which resulted in the establishment of invasive vertebrates and the loss of native marsupials, many of which consume invertebrates. Conservation focusses on the removal of invasive carnivores and the reintroduction of regionally extinct species to fenced sites, resulting in what could be considered a reconstruction of pre-European vertebrate assemblages. In semi-arid Australian spinifex mallee ecosystems, we asked: (1) what is the effect of reconstructed pre-European vertebrate assemblages on native arachnid assemblages? and (2) what direct or indirect mechanisms (predation, disturbance and/or competition) could plausibly be responsible for these effects? We compared sites with reconstructed vertebrate assemblages with paired control sites. Arachnids were sampled using pitfall trapping and direct searching. Hypotheses regarding mechanisms were tested using scat analysis (predation) and by comparing burrow depth (disturbance) and scorpion mass (competition) between control and reconstructed sites. The dominant dune scorpion, Urodacus yaschenkoi, was less abundant and a wolf spider (Lycosa gibsoni species group) more abundant in reconstructed sites. Differences in spider assemblage composition were marginally non-significant. Scat analysis confirmed native vertebrate predation on scorpions and we found no evidence that competition or disturbance affected scorpions. We, thus, suggest that changes in spider assemblages may have resulted from ecological cascades via decreases in dune scorpions. The loss of omnivorous mammals and other changes associated with the invasion of carnivores may, therefore, have had broad-reaching consequences for native arachnid assemblages in Australian ecosystems.

Response of Late Carboniferous and Early Permian Plant Communities to Climate Change

NASA Astrophysics Data System (ADS)

Dimichele, William A.; Pfefferkorn, Hermann W.; Gastaldo, Robert A.

Late Carboniferous and Early Permian strata record the transition from a cold interval in Earth history, characterized by the repeated periods of glaciation and deglaciation of the southern pole, to a warm-climate interval. Consequently, this time period is the best available analogue to the Recent in which to study patterns of vegetational response, both to glacial-interglacial oscillation and to the appearance of warm climate. Carboniferous wetland ecosystems were dominated by spore-producing plants and early gymnospermous seed plants. Global climate changes, largely drying, forced vegetational changes, resulting in a change to a seed plant-dominated world, beginning first at high latitudes during the Carboniferous, reaching the tropics near the Permo-Carboniferous boundary. For most of this time plant assemblages were very conservative in their composition. Change in the dominant vegetation was generally a rapid process, which suggests that environmental thresholds were crossed, and involved little mixing of elements from the wet and dry floras.

Evaluation of airborne lidar data to predict vegetation Presence/Absence

USGS Publications Warehouse

Palaseanu-Lovejoy, M.; Nayegandhi, A.; Brock, J.; Woodman, R.; Wright, C.W.

2009-01-01

This study evaluates the capabilities of the Experimental Advanced Airborne Research Lidar (EAARL) in delineating vegetation assemblages in Jean Lafitte National Park, Louisiana. Five-meter-resolution grids of bare earth, canopy height, canopy-reflection ratio, and height of median energy were derived from EAARL data acquired in September 2006. Ground-truth data were collected along transects to assess species composition, canopy cover, and ground cover. To decide which model is more accurate, comparisons of general linear models and generalized additive models were conducted using conventional evaluation methods (i.e., sensitivity, specificity, Kappa statistics, and area under the curve) and two new indexes, net reclassification improvement and integrated discrimination improvement. Generalized additive models were superior to general linear models in modeling presence/absence in training vegetation categories, but no statistically significant differences between the two models were achieved in determining the classification accuracy at validation locations using conventional evaluation methods, although statistically significant improvements in net reclassifications were observed. ?? 2009 Coastal Education and Research Foundation.

Tundra fire alters stream water chemistry and benthic invertebrate communities, North Slope, Alaska

NASA Astrophysics Data System (ADS)

Allen, A. R.; Bowden, W. B.; Kling, G. W.; Schuett, E.; Kostrzewski, J. M.; Kolden Abatzoglou, C.; Findlay, R. H.

2010-12-01

Increased fire frequency and severity are potentially important consequences of climate change in high latitude ecosystems. The 2007 Anaktuvuk River fire, which burned from July until October, is the largest recorded tundra fire from Alaska's north slope (≈1,000 km2). The immediate effects of wildfire on water chemistry and biotic assemblages in tundra streams are heretofore unknown. We hypothesized that a tundra fire would increase inorganic nutrient inputs to P-limited tundra streams, increasing primary production and altering benthic macroinvertebrate community structure. We examined linkages among: 1) percentage of riparian zone and overall watershed vegetation burned, 2) physical, chemical and biological stream characteristics, and 3) macroinvertebrate communities in streams draining burned and unburned watersheds during the summers of 2008 and 2009. Streams in burned watersheds contained higher mean concentrations of soluble reactive phosphorus (SRP), ammonium (NH4+), and dissolved organic carbon (DOC). In contrast, stream nitrate (NO3-) concentrations were lower in burned watersheds. The net result was that the tundra fire did not affect concentrations of dissolved inorganic nitrogen (NH4+ + NO3-). In spite of increased SRP, benthic chlorophyll-a biomass was not elevated. Macroinvertebrate abundances were 1.5 times higher in streams draining burned watersheds; Chironomidae midges, Nematodes, and Nemoura stoneflies showed the greatest increases in abundance. Multivariate multiple regression identified environmental parameters associated with the observed changes in the macroinvertebrate communities. Since we identified stream latitude as a significant predictor variable, latitude was included in the model as a covariate. After removing the variation associated with latitude, 67.3 % of the variance in macroinvertebrate community structure was explained by a subset of 7 predictor variables; DOC, conductivity, mean temperature, NO3-, mean discharge, SRP and NH4+. The percentage of riparian vegetation burned, the percentage of watershed vegetation burned and total suspended solids were not included in the model as these parameters correlated with DOC concentration at r > 0.90. These results indicate that tundra fire not only alters stream water chemistry, it also affects benthic macroinvertebrate community structure.

Associations among fish assemblage structure and environmental variables in Willamette Basin streams, Oregon

USGS Publications Warehouse

Waite, I.R.; Carpenter, K.D.

2000-01-01

As part of the U.S. Geological Survey's National Water-Quality Assessment Program, fish were collected from 24 selected stream sites in the Willamette Basin during 1993-1995 to determine the composition of the fish assemblages and their relation to the chemical and physical environment. Variance in fish relative abundance was greater among all sites than among spatially distinct reaches within a site (spatial variation) or among multiple sampled years at a site (temporal variation). Therefore, data from a single reach in an individual year was considered to be a reliable estimator of the fish assemblage structure at a site when the data were normalized by percent relative abundance. Multivariate classification and ordination were used to examine patterns in environmental variables and fish relative abundance over differing spatial scales (among versus within ecoregions). Across all ecoregions (all sites), fish assemblages were primarily structured along environmental gradients of water temperature and stream gradient (coldwater, high-gradient forested sites versus warmwater, low-gradient Willamette Valley sites); this pattern superseded patterns that were ecoregion specific. Water temperature, dissolved oxygen, and physical habitat (e.g., riparian canopy and percent riffles) were associated with patterns of fish assemblages across all ecoregions; however, pesticide and total phosphorus concentrations were more important than physical habitat within the Willamette Valley ecoregion. Consideration of stream site stratification (e.g., stream size, ecoregion, and stream gradient), identification of fish to species level (particularly the sculpin family), and detailed measurement of habitat, diurnal dissolved oxygen, and water temperature were critical in evaluating the composition of fish assemblages in relation to land use. In general, these low-gradient valley streams typical of other agricultural regions had poor riparian systems and showed increases in water temperature, nutrients, and fine grain sediments that were associated with degradation in the native fish assemblages. There was an association of high abundances of introduced species and high percent external abnormalities in medium-sized river sites of mixed land use and high abundances of tolerant species in small streams of predominantly agricultural land use.

Patterns of fish diversity and assemblage structure and water quality in the longest Asian tropical river (Mekong)

NASA Astrophysics Data System (ADS)

Chea, R.; Lek, S.; Grenouillet, G.

2016-12-01

Although the Mekong River is one of the world's 35 biodiversity hotspots, the large-scale patterns of fish diversity and assemblage structure remain poorly addressed. The present study aimed to investigate the spatial variability of water quality in the Lower Mekong Basin and the fish distribution patterns in the Lower Mekong River (LMR) and to identify their environmental determinants. Daily fish catch data at 38 sites distributed along the LMR were related to 15 physicochemical and 19 climatic variables. As a result, four different clusters were defined according to the similarity in assemblage composition and 80 indicator species were identified. While fish species richness was highest in the Mekong delta and lowest in the upper part of the LMR, the diversity index was highest in the middle part of the LMR and lowest in the delta. We found that fish assemblages changed along the environmental gradients and that the main drivers affecting the fish assemblage structure were the seasonal variation of temperature, precipitation, dissolved oxygen, pH, and total phosphorus. Specifically, upstream assemblages were characterized by cyprinids and Pangasius catfish, well suited to low temperature, high dissolved oxygen and high pH. Fish assemblages in the delta were dominated by perch-like fish and clupeids, more tolerant to high temperatures, and high levels of nutrients (nitrates and total phosphorus) and salinity. Overall, the patterns were consistent between seasons. Our study contributes to establishing the first holistic fish community study in the LMR. Overall of the LMR water quality, we found that the water in the mainstream was less polluted than its tributaries; eutrophication and salinity could be key factors affecting water quality in LMR. Moreover, the seasonal variation of water quality seemed to be less marked than spatial variation occurring along the longitudinal gradient of Mekong River. Significant degradations were mainly associated with human disturbance and particularly apparent in sites distributed along the man-made canals in Vietnam delta where population growth and agricultural development are intensive.

Relations of habitat-specific algal assemblages to land use and water chemistry in the Willamette Basin, Oregon

USGS Publications Warehouse

Carpenter, K.D.; Waite, I.R.

2000-01-01

Benthic algal assemblages, water chemistry, and habitat were characterized at 25 stream sites in the Willamette Basin, Oregon, during low flow in 1994. Seventy-three algal samples yielded 420 taxa - Mostly diatoms, blue-green algae, and green algae. Algal assemblages from depositional samples were strongly dominated by diatoms (76% mean relative abundance), whereas erosional samples were dominated by blue-green algae (68% mean relative abundance). Canonical correspondence analysis (CCA) of semiquantitative and qualitative (presence/absence) data sets identified four environmental variables (maximum specific conductance, % open canopy, pH, and drainage area) that were significant in describing patterns of algal taxa among sites. Based on CCA, four groups of sites were identified: Streams in forested basins that supported oligotrophic taxa, such as Diatoma mesodon; small streams in agricultural and urban basins that contained a variety of eutrophic and nitrogen-heterotrophic algal taxa; larger rivers draining areas of mixed land use that supported planktonic, eutrophic, and nitrogen-heterotrophic algal taxa; and streams with severely degraded or absent riparian vegetation (> 75% open canopy) that were dominated by other planktonic, eutrophic, and nitrogen-heterotrophic algal taxa. Patterns in water chemistry were consistent with the algal autecological interpretations and clearly demonstrated relationships between land use, water quality, and algal distribution patterns.

Bee communities along a prairie restoration chronosequence: similar abundance and diversity, distinct composition.

PubMed

Tonietto, Rebecca K; Ascher, John S; Larkin, Daniel J

2017-04-01

Recognition of the importance of bee conservation has grown in response to declines of managed honey bees and some wild bee species. Habitat loss has been implicated as a leading cause of declines, suggesting that ecological restoration is likely to play an increasing role in bee conservation efforts. In the midwestern United States, restoration of tallgrass prairie has traditionally targeted plant community objectives without explicit consideration for bees. However, restoration of prairie vegetation is likely to provide ancillary benefits to bees through increased foraging and nesting resources. We investigated community assembly of bees across a chronosequence of restored eastern tallgrass prairies and compared patterns to those in control and reference habitats (old fields and prairie remnants, respectively). We collected bees for 3 yr and measured diversity and abundance of in-bloom flowering plants, vegetation structure, ground cover, and surrounding land use as predictors of bee abundance and bee taxonomic and functional diversity. We found that site-level variables, but not site type or restoration age, were significant predictors of bee abundance (bloom diversity, P = 0.004; bare ground cover, P = 0.02) and bee diversity (bloom diversity, P = 0.01). There were significant correlations between overall composition of bee and blooming plant communities (Mantel test, P = 0.002), and both plant and bee assemblages in restorations were intermediate between those of old fields and remnant prairies. Restorations exhibited high bee beta diversity, i.e., restored sites' bee assemblages were taxonomically and functionally differentiated from each other. This pattern was strong in younger restorations (<20 yr old), but absent from older restorations (>20 yr), suggesting restored prairie bee communities become more similar to one another and more similar to remnant prairie bee communities over time with the arrival of more species and functional groups of bees. Our results indicate that old fields, restorations, and remnants provide habitat for diverse and abundant bee communities, but continued restoration of old fields will help support and conserve bee communities more similar to reference bee communities characteristic of remnant prairies. © 2016 by the Ecological Society of America.

Markedly Divergent Tree Assemblage Responses to Tropical Forest Loss and Fragmentation across a Strong Seasonality Gradient.

PubMed

Orihuela, Rodrigo L L; Peres, Carlos A; Mendes, Gabriel; Jarenkow, João A; Tabarelli, Marcelo

2015-01-01

We examine the effects of forest fragmentation on the structure and composition of tree assemblages within three seasonal and aseasonal forest types of southern Brazil, including evergreen, Araucaria, and deciduous forests. We sampled three southernmost Atlantic Forest landscapes, including the largest continuous forest protected areas within each forest type. Tree assemblages in each forest type were sampled within 10 plots of 0.1 ha in both continuous forests and 10 adjacent forest fragments. All trees within each plot were assigned to trait categories describing their regeneration strategy, vertical stratification, seed-dispersal mode, seed size, and wood density. We detected differences among both forest types and landscape contexts in terms of overall tree species richness, and the density and species richness of different functional groups in terms of regeneration strategy, seed dispersal mode and woody density. Overall, evergreen forest fragments exhibited the largest deviations from continuous forest plots in assemblage structure. Evergreen, Araucaria and deciduous forests diverge in the functional composition of tree floras, particularly in relation to regeneration strategy and stress tolerance. By supporting a more diversified light-demanding and stress-tolerant flora with reduced richness and abundance of shade-tolerant, old-growth species, both deciduous and Araucaria forest tree assemblages are more intrinsically resilient to contemporary human-disturbances, including fragmentation-induced edge effects, in terms of species erosion and functional shifts. We suggest that these intrinsic differences in the direction and magnitude of responses to changes in landscape structure between forest types should guide a wide range of conservation strategies in restoring fragmented tropical forest landscapes worldwide.

Markedly Divergent Tree Assemblage Responses to Tropical Forest Loss and Fragmentation across a Strong Seasonality Gradient

PubMed Central

Orihuela, Rodrigo L. L.; Peres, Carlos A.; Mendes, Gabriel; Jarenkow, João A.; Tabarelli, Marcelo

2015-01-01

We examine the effects of forest fragmentation on the structure and composition of tree assemblages within three seasonal and aseasonal forest types of southern Brazil, including evergreen, Araucaria, and deciduous forests. We sampled three southernmost Atlantic Forest landscapes, including the largest continuous forest protected areas within each forest type. Tree assemblages in each forest type were sampled within 10 plots of 0.1 ha in both continuous forests and 10 adjacent forest fragments. All trees within each plot were assigned to trait categories describing their regeneration strategy, vertical stratification, seed-dispersal mode, seed size, and wood density. We detected differences among both forest types and landscape contexts in terms of overall tree species richness, and the density and species richness of different functional groups in terms of regeneration strategy, seed dispersal mode and woody density. Overall, evergreen forest fragments exhibited the largest deviations from continuous forest plots in assemblage structure. Evergreen, Araucaria and deciduous forests diverge in the functional composition of tree floras, particularly in relation to regeneration strategy and stress tolerance. By supporting a more diversified light-demanding and stress-tolerant flora with reduced richness and abundance of shade-tolerant, old-growth species, both deciduous and Araucaria forest tree assemblages are more intrinsically resilient to contemporary human-disturbances, including fragmentation-induced edge effects, in terms of species erosion and functional shifts. We suggest that these intrinsic differences in the direction and magnitude of responses to changes in landscape structure between forest types should guide a wide range of conservation strategies in restoring fragmented tropical forest landscapes worldwide. PMID:26309252

Oligocene age of the classic Belén fruit and seed assemblage of north coastal Peru based on diatom biostratigraphy

USGS Publications Warehouse

Manchester, Steven R.; Herrera, Fabiany; Fourtainer, Elisabeth; Barron, John A.; Martinez, Jean-Noël

2012-01-01

The Belén flora, in north coastal Peru, is the most diverse fruit and seed assemblage known from the Paleogene of South America. Almost no original paleobotanical work has been done on this assemblage since the pioneering treatments published by E.W. Berry, in the 1920’s and the precise age has not been settled. Nevertheless, the flora has been regarded as an important focal point in understanding the vegetational, orogenic and climatic history of northern South America, and in recent literature has been assumed to be early Eocene. In order to tighten the age assignment, which has varied from early Eocene to early Oligocene in the opinions of different authors, we revisited the Belén site, measured the stratigraphic section, and processed the fruit and seed-containing sediment for age-diagnostic microfossils. Although pollen and foraminifera were not recovered, the sediment is rich in diatoms. The diatom assemblage includes Lisitzinia ornata and Rocella vigilans among others, indicating a latest early Oligocene age (~30-28.5 Ma) for these deeper marine sediments that we infer to have been subsequently reworked into the Belén environment . This association leads us to consider the Belén flora, to be late Oligocene in age as is also consistent with its placement in the Mancora Formation. We also reevaluate the botanical identifications, based on the original museum specimens supplemented by more recently collected specimens. The Belén flora provides a window to extinct forests in South America before the rising of the Andes in western Peru.

A comparative analysis of benthic nematode assemblages from Zostera noltii beds before and after a major vegetation collapse

NASA Astrophysics Data System (ADS)

Materatski, Patrick; Vafeiadou, Anna-Maria; Ribeiro, Rui; Moens, Tom; Adão, Helena

2015-12-01

Benthic nematodes are widely regarded as very suitable organisms to monitor potential ecological effects of natural and anthropogenic disturbances in aquatic ecosystems. During 2008, the seagrass beds of Zostera noltii located in the Mira estuary (SW Portugal) disappeared completely. However, during 2009, slight symptoms of natural recovery were observed, a process which has since evolved intermittently. This study aims to investigate changes in patterns of nematode density, diversity, and trophic composition between two distinct habitat conditions: "before" the collapse of seagrass beds, and during the early recovery "after" the seagrass habitat loss, through the analysis of: i) temporal and spatial distribution patterns of nematode communities, and ii) the most important environmental variables influencing the nematode assemblages. The following hypotheses were tested: i) there would be differences in nematode assemblage density, biodiversity and trophic composition during both ecological conditions, "before" and "after"; and ii) there would be differences in nematode assemblage density, biodiversity and trophic composition at different sampling occasions during both ecological conditions. Nematode density and diversity were significantly different between the two ecological situations. A higher density was recorded before, but a higher diversity was evident after the collapse of Z. noltii. In spite of the disturbance caused by the seagrass habitat loss in the Mira estuary, the nematode trophic composition did not significantly differ between the before and after seagrass collapse situations. Despite the significant differences found among sampling occasions, a consistent temporal pattern was not evident. The response of nematode communities following this extreme event exhibited considerable resistance and resilience to the new environmental conditions.

Toward a Social Ontology for Science Education: Introducing Deleuze and Guattari's Assemblages

ERIC Educational Resources Information Center

Bazzul, Jesse; Kayumova, Shakhnoza

2016-01-01

This essay's main objective is to develop a theoretical, ontological basis for critical, social justice-oriented science education. Using Deleuze and Guattari's notion of assemblages, rhizomes, and arborescent structures, this article challenges authoritarian institutional practices, as well as the subject of these practices, and offers a way for…

Maintaining saproxylic insects in Canada's extensively managed boreal forests: a review

Treesearch

David W. Langor; John R. Spence; H.E. James Hammond; Joshua Jacobs; Tyler P. Cobb

2006-01-01

Recent work on saproxylic insect assemblages in western Canadian boreal forests has demonstrated high faunal diversity and variability, and that adequate assessment of these insects involves significant sampling and taxonomic challenges. Some major determinants of assemblage structure include tree species, degree of decay, stand age and cause of tree death. Experiments...

Evaluating habitat associations of a fish assemblages at multiple scales in a minimally disturbed stream on the Edwards Plateau, Central Texas

USGS Publications Warehouse

Cheek, Brandon D.; Grabowski, Timothy B.; Bean, Preston T.; Groeschel, Jillian R.; Magnelia, Stephan J.

2016-01-01

Low-cost side-scan sonar proved to be a cost-effective means of acquiring information on the habitat availability of the entire river length and allowed the assessment of how a full suite of riverscape-level variables influenced local fish assemblage structure.

Fish Assemblage Structure Under Variable Environmental Conditions in the Ouachita Mountains

Treesearch

Christopher M. Taylor; Lance R. Williams; Riccardo A. Fiorillo; R. Brent Thomas; Melvin L. Warren

2004-01-01

Abstract - Spatial and temporal variability of fish assemblages in Ouachita Mountain streams, Arkansas, were examined for association with stream size and flow variability. Fishes and habitat were sampled quarterly for four years at 12 sites (144 samples) in the Ouachita Mountains Ecosystem Management Research Project, Phase III watersheds. Detrended...

Historic changes in fish assemblage structure in midwestern nonwadeable rivers

USGS Publications Warehouse

Parks, Timothy P.; Quist, Michael C.; Pierce, Clay L.

2014-01-01

Historical change in fish assemblage structure was evaluated in the mainstems of the Des Moines, Iowa, Cedar, Wapsipinicon, and Maquoketa rivers, in Iowa. Fish occurrence data were compared in each river between historical and recent time periods to characterize temporal changes among 126 species distributions and assess spatiotemporal patterns in faunal similarity. A resampling procedure was used to estimate species occurrences in rivers during each assessment period and changes in species occurrence were summarized. Spatiotemporal shifts in species composition were analyzed at the river and river section scale using cluster analysis, pairwise Jaccard's dissimilarities, and analysis of multivariate beta dispersion. The majority of species exhibited either increases or declines in distribution in all rivers with the exception of several “unknown” or inconclusive trends exhibited by species in the Maquoketa River. Cluster analysis identified temporal patterns of similarity among fish assemblages in the Des Moines, Cedar, and Iowa rivers within the historical and recent assessment period indicating a significant change in species composition. Prominent declines of backwater species with phytophilic spawning strategies contributed to assemblage changes occurring across river systems.

Disentangling the impacts of heat wave magnitude, duration and timing on the structure and diversity of sessile marine assemblages

PubMed Central

Yunnie, Anna L.E.; Vance, Thomas; Widdicombe, Stephen

2015-01-01

Extreme climatic events, including heat waves (HWs) and severe storms, influence the structure of marine and terrestrial ecosystems. Despite growing consensus that anthropogenic climate change will increase the frequency, duration and magnitude of extreme events, current understanding of their impact on communities and ecosystems is limited. Here, we used sessile invertebrates on settlement panels as model assemblages to examine the influence of HW magnitude, duration and timing on marine biodiversity patterns. Settlement panels were deployed in a marina in southwest UK for ≥5 weeks, to allow sufficient time for colonisation and development of sessile fauna, before being subjected to simulated HWs in a mesocosm facility. Replicate panel assemblages were held at ambient sea temperature (∼17 °C), or +3 °C or +5 °C for a period of 1 or 2 weeks, before being returned to the marina for a recovery phase of 2–3 weeks. The 10-week experiment was repeated 3 times, staggered throughout summer, to examine the influence of HW timing on community impacts. Contrary to our expectations, the warming events had no clear, consistent impacts on the abundance of species or the structure of sessile assemblages. With the exception of 1 high-magnitude long-duration HW event, warming did not alter not assemblage structure, favour non-native species, nor lead to changes in richness, abundance or biomass of sessile faunal assemblages. The observed lack of effect may have been caused by a combination of (1) the use of relatively low magnitude, realistic heat wave treatments compared to previous studies (2), the greater resilience of mature adult sessile fauna compared to recruits and juveniles, and (3) the high thermal tolerance of the model organisms (i.e., temperate fouling species, principally bryozoans and ascidians). Our study demonstrates the importance of using realistic treatments when manipulating climate change variables, and also suggests that biogeographical context may influence community-level responses to short-term warming events, which are predicted to increase in severity in the future. PMID:25834773

Changes in Species Diversity Patterns and Spatial Heterogeneity during the Secondary Succession of Grassland Vegetation on the Loess Plateau, China.

PubMed

Sun, Caili; Chai, Zongzheng; Liu, Guobin; Xue, Sha

2017-01-01

Analyzing the dynamic patterns of species diversity and spatial heterogeneity of vegetation in grasslands during secondary succession could help with the maintenance and management of these ecosystems. Here, we evaluated the influence of secondary succession on grassland plant diversity and spatial heterogeneity of abandoned croplands on the Loess Plateau (China) during four phases of recovery: 1-5, 5-10, 10-20, and 20-30 years. The species composition and dominance of the grassland vegetation changed markedly during secondary succession and formed a clear successional series, with the species assemblage dominated by Artemisia capillaris → Heteropappus altaicus→ A. sacrorum . The diversity pattern was one of low-high-low, with diversity peaking in the 10-20 year phase, thus corresponding to a hump-backed model in which maximum diversity occurring at the intermediate stages. A spatially aggregated pattern prevailed throughout the entire period of grassland recovery; this was likely linked to the dispersal properties of herbaceous plants and to high habitat heterogeneity. We conclude that natural succession was conducive to the successful recovery of native vegetation. From a management perspective, native pioneer tree species should be introduced about 20 years after abandoning croplands to accelerate the natural succession of grassland vegetation.

Changes in Species Diversity Patterns and Spatial Heterogeneity during the Secondary Succession of Grassland Vegetation on the Loess Plateau, China

PubMed Central

Sun, Caili; Chai, Zongzheng; Liu, Guobin; Xue, Sha

2017-01-01

Analyzing the dynamic patterns of species diversity and spatial heterogeneity of vegetation in grasslands during secondary succession could help with the maintenance and management of these ecosystems. Here, we evaluated the influence of secondary succession on grassland plant diversity and spatial heterogeneity of abandoned croplands on the Loess Plateau (China) during four phases of recovery: 1–5, 5–10, 10–20, and 20–30 years. The species composition and dominance of the grassland vegetation changed markedly during secondary succession and formed a clear successional series, with the species assemblage dominated by Artemisia capillaris→ Heteropappus altaicus→ A. sacrorum. The diversity pattern was one of low–high–low, with diversity peaking in the 10–20 year phase, thus corresponding to a hump-backed model in which maximum diversity occurring at the intermediate stages. A spatially aggregated pattern prevailed throughout the entire period of grassland recovery; this was likely linked to the dispersal properties of herbaceous plants and to high habitat heterogeneity. We conclude that natural succession was conducive to the successful recovery of native vegetation. From a management perspective, native pioneer tree species should be introduced about 20 years after abandoning croplands to accelerate the natural succession of grassland vegetation. PMID:28900433

The origin of modern agglutinated foraminiferal assemblages: evidence from a stratified fjord

NASA Astrophysics Data System (ADS)

Murray, John W.; Alve, Elisabeth; Cundy, Andrew

2003-11-01

Loch Etive, a silled 145 m deep fjord on the Scottish west coast, provides an example of modern benthic foraminiferal assemblages at intermediate depths (i.e., below the intertidal zone and above the CCD) consisting almost exclusively of organic-cemented agglutinated forms. Since such faunas from intermediate depths are rare in modern oceans but relatively common in the fossil record, the present study allows new insights into one kind of ancient environment for which there are few modern analogues. The strong dominance of agglutinated forms (both living and in some dead assemblages of foraminifera to the exclusion of calcareous taxa) is attributed to the unusual oceanographic conditions. These include a combination of restricted deep-water renewals and strong influence of freshwater which drains through large areas (relative to the size of the loch) of vegetated land. The result is calm bottom water conditions with commonly occurring oxygen depletion (although not anoxic), brackish water throughout the water column (salinity 28 in the deeper parts), and organic-rich (mostly terrestrially derived) sediments with geochemical properties, which, to a much larger degree than open marine ones, are controlled by local input. This environment supports low abundance and low diversity live assemblages, mainly restricted to the surface 1 cm of sediment. The dead assemblages show similar faunal characteristics, but the calcareous components are, due to carbonate dissolution, even more reduced. One of the calcareous species in Loch Etive is Elphidium albiumbilicatum. Its occurrence is the first record in British waters and it matches the previously suggested southern limit of its distribution. Analysis of a 90 cm long core representing sediments deposited over the past two centuries shows the presence of a calcareous dominated assemblage, including more marine species, with a higher diversity, in the lower part. This suggests that Loch Etive is in the process of going from a marine, to a more terrestrial dominated environment. The relatively high sedimentation rate (0.5 cm per yr), the apparent lack of smearing through bioturbation, and the presence of faunal changes in response to reduced marine influence over the past centuries, shows that Loch Etive has a good potential for performing high-resolution climatic studies.

Trophic structure of the Barents Sea fish assemblage with special reference to the cod stock recoverability

NASA Astrophysics Data System (ADS)

Dolgov, Andrey V.

2009-04-01

The species composition and trophic structure of the Barents Sea fish assemblage is analysed based on data from research survey trawls and diet analyses of various species. Atlantic cod was the dominant fish species encountered, accounting for more than 55% by abundance or biomass. Only five fish species (long rough dab, thorny skate, Greenland halibut, deepwater redfish and saithe) were sufficiently abundant to be considered as possible food competitors with cod in the Barents Sea. However, possible trophic competition is not high, due to low spatial and temporal overlap between cod and these other species. Analyses of fish assemblages and trophic structures of the Barents Sea and other areas (North Sea, Western Greenland, Newfoundland-Labrador shelf) suggest that Barents Sea cod is the only cod stock for which the ability to recover may not be restricted by trophic relations among fishes, due to a lack of other abundant predatory species and low potential for competition caused by spatial-temporal changes.

Depth as an organizer of fish assemblages in floodplain lakes

USGS Publications Warehouse

Miranda, L.E.

2011-01-01

Depth reduction is a natural process in floodplain lakes, but in many basins has been accelerated by anthropogenic disturbances. A diverse set of 42 floodplain lakes in the Yazoo River Basin (Mississippi, USA) was examined to test the hypothesis of whether depth reduction was a key determinant of water quality and fish assemblage structure. Single and multiple variable analyses were applied to 10 commonly monitored water variables and 54 fish species. Results showed strong associations between depth and water characteristics, and between depth and fish assemblages. Deep lakes provided less variable environments, clearer water, and a wider range of microhabitats than shallow lakes. The greater environmental stability was reflected by the dominant species in the assemblages, which included a broader representation of large-body species, species less tolerant of extreme water quality, and more predators. Stability in deep lakes was further reflected by reduced among-lake variability in taxa representation. Fish assemblages in shallow lakes were more variable than deep lakes, and commonly dominated by opportunistic species that have early maturity, extended breeding seasons, small adult size, and short lifespan. Depth is a causal factor that drives many physical and chemical variables that contribute to organizing fish assemblages in floodplain lakes. Thus, correlations between fish and water transparency, temperature, oxygen, trophic state, habitat structure, and other environmental descriptors may ultimately be totally or partly regulated by depth. In basins undergoing rapid anthropogenic modifications, local changes forced by depth reductions may be expected to eliminate species available from the regional pool and could have considerable ecological implications. ?? 2010 Springer Basel AG (outside the USA).

Seasonal changes in fish assemblage structure at a shallow seamount in the Gulf of California.

PubMed

Jorgensen, Salvador J; Klimley, A Peter; Muhlia-Melo, Arturo; Morgan, Steven G

2016-01-01

Seamounts have generally been identified as locations that can promote elevated productivity, biomass and predator biodiversity. These properties attract seamount-associated fisheries where elevated harvests can be obtained relative to surrounding areas. There exists large variation in the geological and oceanographic environment among the thousands of locations that fall within the broad definition of seamount. Global seamount surveys have revealed that not all seamounts are hotspots of biodiversity, and there remains a strong need to understand the mechanisms that underlie variation in species richness observed. We examined the process of fish species assembly at El Bajo Espiritu Santo (EBES) seamount in the Gulf of California over a five-year study period. To effectively quantify the relative abundance of fast-moving and schooling fishes in a 'blue water' habitat, we developed a simplified underwater visual census (UVC) methodology and analysis framework suitable for this setting and applicable to future studies in similar environments. We found correlations between seasonally changing community structure and variability in oceanographic conditions. Individual species responses to thermal habitat at EBES revealed three distinct assemblages, a 'fall assemblage' tracking warmer overall temperature, a 'spring assemblage' correlated with cooler temperature, and a 'year-round assemblage' with no significant response to temperature. Species richness was greatest in spring, when cool and warm water masses stratified the water column and a greater number of species from all three assemblages co-occurred. We discuss our findings in the context of potential mechanisms that could account for predator biodiversity at shallow seamounts.

Sphagnum-dwelling testate amoebae in subarctic bogs are more sensitive to soil warming in the growing season than in winter: the results of eight-year field climate manipulations.

PubMed

Tsyganov, Andrey N; Aerts, Rien; Nijs, Ivan; Cornelissen, Johannes H C; Beyens, Louis

2012-05-01

Sphagnum-dwelling testate amoebae are widely used in paleoclimate reconstructions as a proxy for climate-induced changes in bogs. However, the sensitivity of proxies to seasonal climate components is an important issue when interpreting proxy records. Here, we studied the effects of summer warming, winter snow addition solely and winter snow addition together with spring warming on testate amoeba assemblages after eight years of experimental field climate manipulations. All manipulations were accomplished using open top chambers in a dry blanket bog located in the sub-Arctic (Abisko, Sweden). We estimated sensitivity of abundance, diversity and assemblage structure of living and empty shell assemblages of testate amoebae in the living and decaying layers of Sphagnum. Our results show that, in a sub-arctic climate, testate amoebae are more sensitive to climate changes in the growing season than in winter. Summer warming reduced species richness and shifted assemblage composition towards predominance of xerophilous species for the living and empty shell assemblages in both layers. The higher soil temperatures during the growing season also decreased abundance of empty shells in both layers hinting at a possible increase in their decomposition rates. Thus, although possible effects of climate changes on preservation of empty shells should always be taken into account, species diversity and structure of testate amoeba assemblages in dry subarctic bogs are sensitive proxies for climatic changes during the growing season. Copyright © 2011 Elsevier GmbH. All rights reserved.

Spatial and temporal structure of fish assemblages in an ''inverse estuary'', the Sine Saloum system (Senegal)

NASA Astrophysics Data System (ADS)

Simier, M.; Blanc, L.; Aliaume, C.; Diouf, P. S.; Albaret, J. J.

2004-01-01

As a consequence of the Sahelian drought, the Sine Saloum, a large estuarine system located in Senegal (West Africa), has become an "inverse estuary" since the late sixties, i.e. salinity increases upstream and reaches 100 in some places. To study the fish assemblages of such a modified system, a survey was conducted in 1992, collecting fish every two months with a purse seine at eight sites spread over the three main branches of the estuary. A total of 73 species belonging to 35 families were identified. Eight species comprised 97% of the total numbers of fish. The predominant species was a small clupeid, Sardinella maderensis, representing more than half of the total biomass and nearly 70% of the total number of fish. The spatio-temporal structure of the fish assemblages was studied using the STATIS-CoA method, which combines the multitable approach with the correspondence analysis method. Whatever the season, a strong spatial organization of fish assemblages was observed, mainly related to depth and salinity. Three types of assemblages were identified. In shallow water areas, fish assemblages were dominated by Mugilidae, Gerreidae and Cichlidae and were stable with time. In open water areas, large fluctuations in the species composition were observed, due to the occasional presence of large schools of pelagic species: in the southern area, where salinity and water transparency were the lowest, the main species were Ilisha africana, Brachydeuterus auritus and Chloroscombrus chrysurus, associated with a few Sciaenidae and Tetraodontidae, while the poorest areas were characterized by only two dominant species, S. maderensis and Scomberomorus tritor.

Ghosts of Yellowstone: Multi-Decadal Histories of Wildlife Populations Captured by Bones on a Modern Landscape

PubMed Central

Miller, Joshua H.

2011-01-01

Natural accumulations of skeletal material (death assemblages) have the potential to provide historical data on species diversity and population structure for regions lacking decades of wildlife monitoring, thereby contributing valuable baseline data for conservation and management strategies. Previous studies of the ecological and temporal resolutions of death assemblages from terrestrial large-mammal communities, however, have largely focused on broad patterns of community composition in tropical settings. Here, I expand the environmental sampling of large-mammal death assemblages into a temperate biome and explore more demanding assessments of ecological fidelity by testing their capacity to record past population fluctuations of individual species in the well-studied ungulate community of Yellowstone National Park (Yellowstone). Despite dramatic ecological changes following the 1988 wildfires and 1995 wolf re-introduction, the Yellowstone death assemblage is highly faithful to the living community in species richness and community structure. These results agree with studies of tropical death assemblages and establish the broad capability of vertebrate remains to provide high-quality ecological data from disparate ecosystems and biomes. Importantly, the Yellowstone death assemblage also correctly identifies species that changed significantly in abundance over the last 20 to ∼80 years and the directions of those shifts (including local invasions and extinctions). The relative frequency of fresh versus weathered bones for individual species is also consistent with documented trends in living population sizes. Radiocarbon dating verifies the historical source of bones from Equus caballus (horse): a functionally extinct species. Bone surveys are a broadly valuable tool for obtaining population trends and baseline shifts over decadal-to-centennial timescales. PMID:21464921

Ecospaces occupied by Homo erectus and Homo sapiens in insular Southeast Asia in the Pleistocene

NASA Astrophysics Data System (ADS)

Hertler, Christine; Haupt, Susanne; Volmer, Rebekka; Bruch, Angela

2014-05-01

Hominins migrated to the islands of the Sunda Shelf multiple times. At least two immigration events are evident, an early immigration of Homo erectus in the late Early Pleistocene and a second immigration of Homo sapiens during the Late Pleistocene. Regional environments changed considerably in the Pleistocene. Expansion patterns among hominins are at least co-determined by their ecologies and environmental change. We examine these expansion patterns on the basis of habitat reconstructions. Mammalian communities provide a geographically extensive record and permit to assess hominin ecospaces. Although chronological resolution is low, they represent the most complete record of habitat changes associated with hominin expansion patterns. In order to reconstruct and compare hominin ecospaces on a quantitative scale, we set up a reference sample consisting of mammalian communities of 117 national parks in South Asia and Sub-Saharan Africa. The diversity of such communities is assessed by ecological profiling of specialized herbivore taxa. Moreover, datasets on climate and vegetation correlate with the diversity structure of such specialized herbivore communities. Reconstructing the diversity structure of communities at key sites in Pleistocene Southeast Asia permits to infer features of the climatic and vegetation framework associated with different hominin taxa. Our results show that Homo erectus and Homo sapiens did not occupy similar ecospaces. The ecospace of Homo erectus is characterized by comparatively low diversity among frugivorous and folivorous taxa, while obligate grazers are part of the assemblages. Specialized herbivore communities with such a diversity structure occur at present in East Africa, while they are absent in Southeast Asia. In the reference sample, this type of ecospace corresponds to seasonal wetlands. Although Homo sapiens still inhabits this type of environment in Southeast Asia, his ecospace is wider. Homo sapiens is associated with specialized herbivore communities dominated by frugivorous and folivorous taxa. Specialized herbivore communities with such a diversity structure occur at present in rainforests on the Sunda Shelf.

Consistency of temporal and habitat-related differences among assemblages of fish in coastal lagoons

NASA Astrophysics Data System (ADS)

Gray, Charles A.; Rotherham, Douglas; Johnson, Daniel D.

2011-12-01

The consistency of habitat-related differences in coastal lagoon fish assemblages was assessed across different spatial and temporal scales. Multimesh gillnets were used to sample assemblages of fish on a monthly basis for 1-year in three habitats (shallow seagrass, shallow bare and deep substrata) at two locations (>1 km apart), in each of two coastal lagoons (approximately 500 km apart), in southeastern Australia. A total of 48 species was sampled with 34 species occurring in both lagoons and in all three habitats; species caught in only one lagoon or habitat occurred in low numbers. Ten species dominated assemblages and accounted for more than 83% of all individuals sampled. In both lagoons, assemblages in the deep habitat consistently differed to those in the shallow strata (regardless of habitat). Several species were caught more frequently or in larger numbers in the deep habitat. Assemblages in the two shallow habitats did not differ consistently and were dominated by the same species and sizes of fish, possibly due to habitat heterogeneity and the scale and method of sampling. Within each lagoon, very few between location differences in assemblages within each habitat were observed. Consistent differences in assemblages were detected between lagoons for the shallow bare and deep habitats, indicating there were some intrinsic differences in ichthyofauna between lagoons. Assemblages in spring differed to those in summer, which differed to those in winter for the shallow bare habitat in both lagoons, and the deep habitat in only one lagoon. Fish-habitat relationships are complex and differences in the fish fauna between habitats were often temporally inconsistent. This study highlights the need for greater testing of habitat relationships in space and time to assess the generality of observations and to identify the processes responsible for structuring assemblages.

Floods and Fires: Decadal-scale terrestrial data from Santa Barbara Basin during the Common Era

NASA Astrophysics Data System (ADS)

Heusser, L. E.; Hendy, I. L.; Pak, D. K.

2016-12-01

High-resolution studies of pollen and charcoal from annually-deposited laminae of Santa Barbara Basin (SBB) reflect the regional dynamics of southern coastal California vegetation from 700- to 1900 C.E. through the Medieval Climate Anomaly, the Little Ice Age to the arrival of Europeans. Kasten core SPR0901-02KC (34°16.8' N, 120°02.3' W; 588 m water depth) was analyzed for pollen at consecutive 0.5 cm depth intervals that correspond with an average deposition of five years from 150 cm to core top. During the Medieval Climate Anomaly (MCA; 800 to 1270 C.E.) SBB sediments were dominated by xeric vegetation types (drought-resistant coastal sagebrush and chaparral) implying reduced precipitation in the southern California region. Subsequent, pulsating increases in mesic arboreal vegetation, notably oak assemblages, increase from a minima at 1200 C.E., stabilizing between 1450-1550 C.E. before gradually decreasing toward the 20th century. Prior to the late 14th century, fire events (inferred from microcharcoal fragments deposited in SBB), are rare and often associated with low lithogenic input into SBB. Notable charcoal peaks normalized to pollen abundance occur at 1110, 1200, 1410-1440, 1530, and 1764, with only the 1530 event associated with a flood layer. Fires do not appear to drive significant sediment input into the basin. Increased charcoal deposition follows the settlement of California rose to peak values in the mid 19th century. Decadal-scale fluctuations in relative abundance of mesic vegetation generally correspond with variations in sea-surface temperatures inferred from foraminiferal assemblages in SBB, and are consistent with changes in northern hemisphere circulation, indicating weakened Arctic Lows and extended La Niña-like conditions during the MCA and strengthened Aleutian Lows and extended El Niño-like atmospheric conditions during the LIA. Minimal abundance of oak and pine beginning in the 18th century corresponds with the historical period in Santa Barbara and clearing of land for ranching and agriculture.

Ice-cover is the principal driver of ecological change in High Arctic lakes and ponds.

PubMed

Griffiths, Katherine; Michelutti, Neal; Sugar, Madeline; Douglas, Marianne S V; Smol, John P

2017-01-01

Recent climate change has been especially pronounced in the High Arctic, however, the responses of aquatic biota, such as diatoms, can be modified by site-specific environmental characteristics. To assess if climate-mediated ice cover changes affect the diatom response to climate, we used paleolimnological techniques to examine shifts in diatom assemblages from ten High Arctic lakes and ponds from Ellesmere Island and nearby Pim Island (Nunavut, Canada). The sites were divided a priori into four groups ("warm", "cool", "cold", and "oasis") based on local elevation and microclimatic differences that result in differing lengths of the ice-free season, as well as about three decades of personal observations. We characterized the species changes as a shift from Condition 1 (i.e. a generally low diversity, predominantly epipelic and epilithic diatom assemblage) to Condition 2 (i.e. a typically more diverse and ecologically complex assemblage with an increasing proportion of epiphytic species). This shift from Condition 1 to Condition 2 was a consistent pattern recorded across the sites that experienced a change in ice cover with warming. The "warm" sites are amongst the first to lose their ice covers in summer and recorded the earliest and highest magnitude changes. The "cool" sites also exhibited a shift from Condition 1 to Condition 2, but, as predicted, the timing of the response lagged the "warm" sites. Meanwhile some of the "cold" sites, which until recently still retained an ice raft in summer, only exhibited this shift in the upper-most sediments. The warmer "oasis" ponds likely supported aquatic vegetation throughout their records. Consequently, the diatoms of the "oasis" sites were characterized as high-diversity, Condition 2 assemblages throughout the record. Our results support the hypothesis that the length of the ice-free season is the principal driver of diatom assemblage responses to climate in the High Arctic, largely driven by the establishment of new aquatic habitats, resulting in increased diversity and the emergence of novel growth forms and epiphytic species.

The influence of large wood accumulations on riparian seed bank diversity

NASA Astrophysics Data System (ADS)

Osei, N. A.

2012-04-01

Little is known about the structure and complexity of seed bank within the riparian corridor and the how large wood accumulations contribute to riparian seed bank diversity. This study aimed to examine and quantify seed bank assemblage and diversity along the undisturbed riparian corridor of the Highland Water, a second order lowland stream draining the New Forest. Seed bank samples were collected from five riparian corridor microhabitats namely mid-channel bars, floodplains, bare banks, banks adjacent large wood accumulations and within large wood accumulations that differed in their hydrologic connectivity with the river. Descriptive statistics and ordination methods applied to the floristic and sediment data sets indicates that sediment organic matter content, species richness and proportions of functional types distinctly differed among the riparian microhabitats types but there was no difference in viable seed densities. Banks adjacent large wood accumulations were the most floristically diverse and rich in organic matter with mid-channel bars exhibiting the reverse. This was due to the ability of large wood accumulations to buffer varying magnitudes of physical gradients and sort seeds and sediments, therefore altering the character of bare banks. This study not only strengthen the evidence that riparian corridors exhibit elevated spatial sediment and vegetation heterogeneity but also demonstrates the importance of large wood accumulation as habitat modifiers, ecosystem engineers and conservation sink for moisture, organic matter and seeds, resources essential for riparian vegetation conservation, recovery and restoration efforts.

Late-Quaternary vegetation history at White Pond on the inner Coastal Plain of South Carolina*1

NASA Astrophysics Data System (ADS)

Watts, W. A.

1980-03-01

At White Pond near Columbia, South Carolina, a pollen assemblage of Pinus banksiana (jack pine), Picea (spruce), and herbs is dated between 19,100 and 12,800 14C yr B.P. Plants of sandhill habitats are more prominent than at other sites of similar age, and pollen of deciduous trees is infrequent. The vegetation was probably a mosaic of pine and spruce stands with prairies and sand-dune vegetation. The climate may have been like that of the eastern boreal forest today. 14C dates of 12,800 and 9500 yr B.P. bracket a time when Quercus (oak), Carya (hickory), Fagus (beech), and Ostrya-Carpinus (ironwood) dominated the vegetation. It is estimated that beech and hickory made up at least 25% of the forest trees. Conifers were rare or absent. The environment is interpreted as hickory-rich mesic deciduous forest with a climate similar to but slightly warmer than that of the northern hardwoods region of western New York State. After 9500 yr B.P. oak and pine forest dominated the landscape, with pine becoming the most important tree genus in the later Holocene.

The ichthyoplankton assemblage and the environmental variables off the NW and N Iberian Peninsula coasts, in early spring

NASA Astrophysics Data System (ADS)

Rodriguez, J. M.; Gonzalez-Nuevo, G.; Gonzalez-Pola, C.; Cabal, J.

2009-05-01

Ichthyoplankton and mesozooplankton were sampled and fluorescence and physical environmental variables were measured off the NW and N Iberian Peninsula coasts, during April 2005. A total of 51 species of fish larvae, belonging to 26 families, were recorded. Sardina pilchardus, with 43.8% and 58.7% of the total fish egg and larval catches, respectively, dominated the ichthyoplankton assemblage. The study area was divided by a cross-shelf frontal structure into two hydrographic regions that coincided with the Atlantic and Cantabrian geographic regions. Ichthyoplankton abundance was higher in the Cantabrian region while larval diversity was higher in the Atlantic region. This was the main alongshore variability in the structure of the larval fish assemblage. Nevertheless, the stronger variability, related with the presence of a shelf-slope front, was found in the central-eastern Cantabrian region where two major larval fish assemblages, an "outer" and a "coastal", were distinguished. The Atlantic region, where the shelf-slope front was not found, was inhabited by a single larval fish assemblage. Canonical correspondence analysis revealed that, off the NW and N Iberian Peninsula coasts, the horizontal distribution of larval fish species in early spring may be explained by a limited number of environmental variables. Of these, the most important were the physical variables depth and sea surface temperature.

Distinct bacterial assemblages reside at different depths in Arctic multiyear sea ice.

PubMed

Hatam, Ido; Charchuk, Rhianna; Lange, Benjamin; Beckers, Justin; Haas, Christian; Lanoil, Brian

2014-10-01

Bacterial communities in Arctic sea ice play an important role in the regulation of nutrient and energy dynamics in the Arctic Ocean. Sea ice has vertical gradients in temperature, brine salinity and volume, and light and UV levels. Multiyear ice (MYI) has at least two distinct ice layers: old fresh ice with limited permeability, and new saline ice, and may also include a surface melt pond layer. Here, we determine whether bacterial communities (1) differ with ice depth due to strong physical and chemical gradients, (2) are relatively homogenous within a layer, but differ between layers, or (3) do not vary with ice depth. Cores of MYI off northern Ellesmere Island, NU, Canada, were subsectioned in 30-cm intervals, and the bacterial assemblage structure was characterized using 16S rRNA gene pyrotag sequencing. Assemblages clustered into three distinct groups: top (0-30 cm); middle (30-150 cm); and bottom (150-236 cm). These layers correspond to the occurrence of refrozen melt pond ice, at least 2-year-old ice, and newly grown first-year ice at the bottom of the ice sheet, respectively. Thus, MYI houses multiple distinct bacterial assemblages, and in situ conditions appear to play a less important role in structuring microbial assemblages than the age or conditions of the ice at the time of formation. © 2014 Federation of European Microbiological Societies. Published by John Wiley & Sons Ltd. All rights reserved.

Spatial patterns of composition in tidal wetland plant and algal assemblages in Oregon: Implications for wetland vulnerability to sea-level rise

EPA Science Inventory

Plants and algae mediate important ecosystem processes in coastal marshes and swamps. These assemblages are structured in part by estuarine environmental gradients such as tidal elevation and salinity. Such gradients are likely to change with sea-level rise (SLR) due to global cl...

Using Snorkeling to Quantify Fish Assemblage Structure in Arkansas Streams

Treesearch

David G. Lonzarich; Mary E. Lonzarich; Melvin L. Warren

2004-01-01

Abstract - As a technique for surveying fish populations in low diversity, clear streams of the Pacific Northwest, snorkeling is a commonly used alternative to electrofishing. While the method is becoming more widely used in the high diversity streams of eastern North America, its efficacy as a tool for surveying fish assemblages in these streams is...

Influence of landscape structure on reef fish assemblages

USGS Publications Warehouse

Grober-Dunsmore, R.; Frazer, T.K.; Beets, J.P.; Lindberg, W.J.; Zwick, P.; Funicelli, N.A.

2008-01-01

Management of tropical marine environments calls for interdisciplinary studies and innovative methodologies that consider processes occurring over broad spatial scales. We investigated relationships between landscape structure and reef fish assemblage structure in the US Virgin Islands. Measures of landscape structure were transformed into a reduced set of composite indices using principal component analyses (PCA) to synthesize data on the spatial patterning of the landscape structure of the study reefs. However, composite indices (e.g., habitat diversity) were not particularly informative for predicting reef fish assemblage structure. Rather, relationships were interpreted more easily when functional groups of fishes were related to individual habitat features. In particular, multiple reef fish parameters were strongly associated with reef context. Fishes responded to benthic habitat structure at multiple spatial scales, with various groups of fishes each correlated to a unique suite of variables. Accordingly, future experiments should be designed to test functional relationships based on the ecology of the organisms of interest. Our study demonstrates that landscape-scale habitat features influence reef fish communities, illustrating promise in applying a landscape ecology approach to better understand factors that structure coral reef ecosystems. Furthermore, our findings may prove useful in design of spatially-based conservation approaches such as marine protected areas (MPAs), because landscape-scale metrics may serve as proxies for areas with high species diversity and abundance within the coral reef landscape. ?? 2007 Springer Science+Business Media B.V.

Taxonomic and Functional Resilience of Grasshoppers (Orthoptera, Caelifera) to Fire in South Brazilian Grasslands.

PubMed

Ferrando, C P R; Podgaiski, L R; Costa, M K M; Mendonça, M D S

2016-08-01

Fire is a frequent disturbance in grassland ecosystems enabling variability in habitat characteristics and creating important environmental filters for community assembly. Changes in vegetation have a large influence on herbivore insect assemblages. Here, we explored the responses of grasshoppers to disturbance by fire in grasslands of southern Brazil through a small-scale experiment based in paired control and burned plots. The resilience of grasshoppers was assessed by monitoring changes to their abundance, taxonomic, and functional parameters along time. Burned patches have been already recolonized by grasshoppers 1 month after fire and did not differ in terms of abundance and richness from control areas in any evaluated time within 1 year. Simpson diversity decreased 1 month after fire due to the increased dominance of Dichroplus misionensis (Carbonell) and Orphulella punctata (De Geer). In this period, grasshoppers presented in average a smaller body and a larger relative head size; these are typically nymph characteristics, which are possibly indicating a preference of juveniles for the young high-quality vegetation, or a diminished vulnerability to predation in open areas. Further, at 6 months after fire grasshoppers with smaller relative hind femur and thus lower dispersal ability seemed to be benefitted in burned patches. Finally, 1 year after fire grasshoppers became more similar to each other in relation to their set of traits. This study demonstrates how taxonomic and functional aspects of grasshopper assemblages can be complementary tools to understand their responses to environmental change.

Ancient Urban Ecology Reconstructed from Archaeozoological Remains of Small Mammals in the Near East

PubMed Central

Weissbrod, Lior; Malkinson, Dan; Cucchi, Thomas; Gadot, Yuval; Finkelstein, Israel; Bar-Oz, Guy

2014-01-01

Modern rapidly expanding cities generate intricate patterns of species diversity owing to immense complexity in urban spatial structure and current growth trajectories. We propose to identify and uncouple the drivers that give rise to these patterns by looking at the effect of urbanism on species diversity over a previously unexplored long temporal frame that covers early developments in urbanism. To provide this historical perspective we analyzed archaeozoological remains of small mammals from ancient urban and rural sites in the Near East from the 2nd to the 1st millennium BCE, and compared them to observations from modern urban areas. Our data show that ancient urban assemblages consistently comprised two main taxa (Mus musculus domesticus and Crocidura sp.), whereas assemblages of contemporaneous rural sites were significantly richer. Low species diversity also characterizes high-density core areas of modern cities, suggesting that similar ecological drivers have continued to operate in urban areas despite the vast growth in their size and population densities, as well as in the complexity of their technologies and social organization. Research in urban ecology has tended to emphasize the relatively high species diversity observed in low-density areas located on the outskirts of cities, where open and vegetated patches are abundant. The fact that over several millennia urban evolution did not significantly alter species diversity suggests that low diversity is an attribute of densely-populated settlements. The possibility that high diversity in peripheral urban areas arose only recently as a short-term phenomenon in urban ecology merits further research based on long-term data. PMID:24622726

Ancient urban ecology reconstructed from archaeozoological remains of small mammals in the Near East.

PubMed

Weissbrod, Lior; Malkinson, Dan; Cucchi, Thomas; Gadot, Yuval; Finkelstein, Israel; Bar-Oz, Guy

2014-01-01

Modern rapidly expanding cities generate intricate patterns of species diversity owing to immense complexity in urban spatial structure and current growth trajectories. We propose to identify and uncouple the drivers that give rise to these patterns by looking at the effect of urbanism on species diversity over a previously unexplored long temporal frame that covers early developments in urbanism. To provide this historical perspective we analyzed archaeozoological remains of small mammals from ancient urban and rural sites in the Near East from the 2nd to the 1st millennium BCE, and compared them to observations from modern urban areas. Our data show that ancient urban assemblages consistently comprised two main taxa (Mus musculus domesticus and Crocidura sp.), whereas assemblages of contemporaneous rural sites were significantly richer. Low species diversity also characterizes high-density core areas of modern cities, suggesting that similar ecological drivers have continued to operate in urban areas despite the vast growth in their size and population densities, as well as in the complexity of their technologies and social organization. Research in urban ecology has tended to emphasize the relatively high species diversity observed in low-density areas located on the outskirts of cities, where open and vegetated patches are abundant. The fact that over several millennia urban evolution did not significantly alter species diversity suggests that low diversity is an attribute of densely-populated settlements. The possibility that high diversity in peripheral urban areas arose only recently as a short-term phenomenon in urban ecology merits further research based on long-term data.

Unravelling Soil Fungal Communities from Different Mediterranean Land-Use Backgrounds

PubMed Central

Nilsson, R. Henrik; Girlanda, Mariangela; Vizzini, Alfredo; Bonfante, Paola; Bianciotto, Valeria

2012-01-01

Background Fungi strongly influence ecosystem structure and functioning, playing a key role in many ecological services as decomposers, plant mutualists and pathogens. The Mediterranean area is a biodiversity hotspot that is increasingly threatened by intense land use. Therefore, to achieve a balance between conservation and human development, a better understanding of the impact of land use on the underlying fungal communities is needed. Methodology/Principal Findings We used parallel pyrosequencing of the nuclear ribosomal ITS regions to characterize the fungal communities in five soils subjected to different anthropogenic impact in a typical Mediterranean landscape: a natural cork-oak forest, a pasture, a managed meadow, and two vineyards. Marked differences in the distribution of taxon assemblages among the different sites and communities were found. Data analyses consistently indicated a sharp distinction of the fungal community of the cork oak forest soil from those described in the other soils. Each soil showed features of the fungal assemblages retrieved which can be easily related to the above-ground settings: ectomycorrhizal phylotypes were numerous in natural sites covered by trees, but were nearly completely missing from the anthropogenic and grass-covered sites; similarly, coprophilous fungi were common in grazed sites. Conclusions/Significance Data suggest that investigation on the below-ground fungal community may provide useful elements on the above-ground features such as vegetation coverage and agronomic procedures, allowing to assess the cost of anthropogenic land use to hidden diversity in soil. Datasets provided in this study may contribute to future searches for fungal bio-indicators as biodiversity markers of a specific site or a land-use degree. PMID:22536336

Combining paleo-data and modern exclosure experiments to assess the impact of megafauna extinctions on woody vegetation

PubMed Central

Bakker, Elisabeth S.; Gill, Jacquelyn L.; Johnson, Christopher N.; Vera, Frans W. M.; Sandom, Christopher J.; Asner, Gregory P.; Svenning, Jens-Christian

2016-01-01

Until recently in Earth history, very large herbivores (mammoths, ground sloths, diprotodons, and many others) occurred in most of the World’s terrestrial ecosystems, but the majority have gone extinct as part of the late-Quaternary extinctions. How has this large-scale removal of large herbivores affected landscape structure and ecosystem functioning? In this review, we combine paleo-data with information from modern exclosure experiments to assess the impact of large herbivores (and their disappearance) on woody species, landscape structure, and ecosystem functions. In modern landscapes characterized by intense herbivory, woody plants can persist by defending themselves or by association with defended species, can persist by growing in places that are physically inaccessible to herbivores, or can persist where high predator activity limits foraging by herbivores. At the landscape scale, different herbivore densities and assemblages may result in dynamic gradients in woody cover. The late-Quaternary extinctions were natural experiments in large-herbivore removal; the paleoecological record shows evidence of widespread changes in community composition and ecosystem structure and function, consistent with modern exclosure experiments. We propose a conceptual framework that describes the impact of large herbivores on woody plant abundance mediated by herbivore diversity and density, predicting that herbivore suppression of woody plants is strongest where herbivore diversity is high. We conclude that the decline of large herbivores induces major alterations in landscape structure and ecosystem functions. PMID:26504223

Combining paleo-data and modern exclosure experiments to assess the impact of megafauna extinctions on woody vegetation.

PubMed

Bakker, Elisabeth S; Gill, Jacquelyn L; Johnson, Christopher N; Vera, Frans W M; Sandom, Christopher J; Asner, Gregory P; Svenning, Jens-Christian

2016-01-26

Until recently in Earth history, very large herbivores (mammoths, ground sloths, diprotodons, and many others) occurred in most of the World's terrestrial ecosystems, but the majority have gone extinct as part of the late-Quaternary extinctions. How has this large-scale removal of large herbivores affected landscape structure and ecosystem functioning? In this review, we combine paleo-data with information from modern exclosure experiments to assess the impact of large herbivores (and their disappearance) on woody species, landscape structure, and ecosystem functions. In modern landscapes characterized by intense herbivory, woody plants can persist by defending themselves or by association with defended species, can persist by growing in places that are physically inaccessible to herbivores, or can persist where high predator activity limits foraging by herbivores. At the landscape scale, different herbivore densities and assemblages may result in dynamic gradients in woody cover. The late-Quaternary extinctions were natural experiments in large-herbivore removal; the paleoecological record shows evidence of widespread changes in community composition and ecosystem structure and function, consistent with modern exclosure experiments. We propose a conceptual framework that describes the impact of large herbivores on woody plant abundance mediated by herbivore diversity and density, predicting that herbivore suppression of woody plants is strongest where herbivore diversity is high. We conclude that the decline of large herbivores induces major alterations in landscape structure and ecosystem functions.

Effects of pulsed nutrient inputs on phytoplankton assemblage structure and blooms in an enclosed coastal area

NASA Astrophysics Data System (ADS)

Spatharis, Sofie; Tsirtsis, George; Danielidis, Daniel B.; Chi, Thang Do; Mouillot, David

2007-07-01

The response of phytoplankton assemblage structure to terrestrial nutrient inputs was examined for the Gulf of Kalloni in the Northern Aegean Sea, a productive semi-enclosed coastal marine ecosystem. The study was focused on a typical annual cycle, and emphasis was placed on the comparative analysis between blooms developing after significant nutrient inputs from the watershed, and naturally occurring blooms. Baseline information was collected on a monthly basis from a network of stations located in the oligotrophic open sea and the interior and more productive part of the embayment. Intensive sampling was also carried out along a gradient in the vicinity of a river which was the most important source of freshwater and nutrient input for the Gulf. Phytoplankton assemblage structure was analyzed from 188 samples using diversity indices (Shannon and Average Taxonomic Distinctness), multivariate plotting methods (NMDS), multivariate statistics (PERMANOVA), and canonical correspondence analysis (CCA). Three characteristic assemblages were recognized: (1) an autumn assemblage developed under nutrient depleted conditions, having low diversity due to the dominance of two small diatoms, (2) a winter bloom of the potentially toxic species Pseudo-nitzschia calliantha occurring immediately after a nutrient peak and characterized by very low diversity, and (3) a naturally occurring early summer bloom of centric diatoms with relatively high diversity. The results of the study support the view that moderate nutrient inputs may have a beneficial effect on the functioning of coastal ecosystems, stimulating the taxonomic diversity through the growth of different taxonomic groups and taxa. On the other hand, a sudden pulse of high nutrient concentrations may greatly affect the natural succession of organisms, have a negative effect on the diversity through the dominance of a single species, and can increase the possibility of a harmful algal bloom development.

Mesh size effects on assessments of planktonic hydrozoan abundance and assemblage structure

NASA Astrophysics Data System (ADS)

Nogueira Júnior, Miodeli; Pukanski, Luis Eduardo de M.; Souza-Conceição, José M.

2015-04-01

The choice of appropriate mesh-size is paramount to accurately quantify planktonic assemblages, however there is no such information available for hydrozoans. Here planktonic hydrozoan abundance and assemblage structure were compared using 200 and 500 μm meshes at Babitonga estuary (S Brazil), throughout a year cycle. Species richness and Shannon-Wiener diversity were higher in the 200 μm mesh, while evenness was typically higher in the 500 μm. Assemblage structure was significantly different between meshes (PERMANOVA, P < 0.05; n = 72 pairs of samples) both regarding taxa and size composition. These discrepancies are due to significant underestimation of small hydromedusae by the coarse mesh, like Obelia spp., young Liriope tetraphylla, Podocoryna loyola and others. Yet, larger taxa like Eucheilota maculata and adult L. tetraphylla were more abundant in the coarse mesh on some occasions and others such as Blackfordia virginica and Muggiaea kochi were similarly represented in both meshes. Overall collection efficiency of the coarse mesh (CE500) was 14.4%, with monthly averages between 1.6% and 43.0%, in July (winter) and January (summer) respectively. Differences between the meshes were size-dependent; CE500 was ~ 0.3% for hydrozoans sizing < 0.5 mm, ~ 21% for those between 1 and 2 mm, ~ 56% for those between 2 and 4 mm, and nearly 100% for larger ones, reaching up to 312% for hydrozoans > 8 mm in October. These results suggest that both meshes have their drawbacks and the best choice would depend on the objectives of each study. Nevertheless species richness, total abundances and most taxa were better represented by the 200 μm mesh, suggesting that it is more appropriate to quantitatively sample planktonic hydrozoan assemblages.

Reproductive habitat selection in alien and native populations of the genus Discoglossus

NASA Astrophysics Data System (ADS)

Escoriza, Daniel; Boix, Dani

2014-08-01

The existence of suitable breeding habitats is an important factor explaining the regional presence of an anuran species. This study examined patterns of habitat selection in populations of three species of the genus Discoglossus: Discoglossusgalganoi (south-western Iberian Peninsula), Discoglossusscovazzi (Morocco) and Discoglossuspictus (three different areas were included in the study: Sicily, Tunisia and north-eastern Iberian Peninsula). The populations of D. pictus on the Iberian Peninsula are allochthonous, and analysis of these patterns may provide insights into the processes that regulate the invasion phase. The hypotheses tested were: (i) congeneric species show the same patterns of habitat selection, and alien species have been established following these patterns; (ii) there are differences in species associations between assemblages structured deterministically and by chance, i.e. native versus invaded assemblages. The larval habitats of three species of this genus were characterized by measuring physical and chemical parameters of the water bodies. We examined the covariation between the presence of Discoglossus species and the species richness of sympatric anurans, and investigated a possible relationship between morphological similarity (as a proxy of functional group) and overlap in habitat use. The results showed that congeneric species are morphologically conservative and also select very similar types of aquatic habitat. The alien population and other sympatric species showed a high degree of overlap in habitat use, which was greater than that observed in the native assemblage with a similar functional richness. Species associations were not structured on the basis of morphological similarity in any of the assemblages. Among native populations, the presence of Discoglossus was either negatively correlated or not significantly correlated with species richness. Only the alien population showed a positive correlation between its presence and species richness, which suggests a loss of assemblage structure.

CIGESMED for divers: Establishing a citizen science initiative for the mapping and monitoring of coralligenous assemblages in the Mediterranean Sea.

PubMed

Gerovasileiou, Vasilis; Dailianis, Thanos; Panteri, Emmanouela; Michalakis, Nikitas; Gatti, Giulia; Sini, Maria; Dimitriadis, Charalampos; Issaris, Yiannis; Salomidi, Maria; Filiopoulou, Irene; Doğan, Alper; Thierry de Ville d'Avray, Laure; David, Romain; Ҫinar, Melih Ertan; Koutsoubas, Drosos; Féral, Jean-Pierre; Arvanitidis, Christos

2016-01-01

Over the last decade, inventorying and monitoring of marine biodiversity has significantly benefited from the active engagement of volunteers. Although several Citizen Science projects concern tropical reef ecosystems worldwide, none of the existing initiatives has yet specifically focused on their Mediterranean equivalents. Mediterranean coralline reefs, known as "coralligenous", are bioherms primarily built by calcifying rhodophytes on hard substrates under dim-light conditions; they are considered hotspots of biodiversity and are extremely popular among divers due to their complex structure, conspicuous biological wealth and high aesthetic value. Nevertheless, data on their distribution, structure and conservation status is lacking for several Mediterranean areas while they are vulnerable to an increasing number of threats. In the framework of CIGESMED SeasEra (ERAnet) project a specialized Citizen Science project was launched, aiming to engage enthusiast divers in the study and monitoring of Mediterranean coralligenous assemblages through the gathering of basic information regarding their spatial occurrence, assemblage structure and associated pressures or threats. For its active implementation, a data collection protocol and a multilingual website were developed, comprising an educational module and a data submission platform. Georeferenced data reporting focuses on: (a) basic topographic and abiotic features for the preliminary description of each site, and the creation of data series for sites receiving multiple visits; (b) presence and relative abundance of typical conspicuous species, as well as (c) existence of pressures and imminent threats, for the characterization and assessment of coralligenous assemblages. A variety of tools is provided to facilitate end users, while divers have the choice to report additional information and are encouraged to upload their photographs. The long-term goal is the development of an active community of amateur observers providing widespread and ecologically significant data on coralligenous assemblages.

An assessment of fish assemblage structure in a large river

USGS Publications Warehouse

Kiraly, Ian A.; Coghlan, S.M.; Zydlewski, Joseph D.; Hayes, D.

2015-01-01

The Penobscot River drains the largest watershed in Maine and once provided spawning and rearing habitats to 11 species of diadromous fishes. The construction of dams blocked migrations of these fishes and likely changed the structure and function of fish assemblages throughout the river. The proposed removal of two main-stem dams, improved upstream fish passage at a third dam, and construction of a fish bypass on a dam obstructing a major tributary is anticipated to increase passage of and improve habitat connectivity for both diadromous and resident fishes. We captured 61 837 fish of 35 species in the Penobscot River and major tributaries, through 114 km of boat electrofishing. Patterns of fish assemblage structure did not change considerably during our sampling; relatively few species contributed to seasonal and annual variability within the main-stem river, including smallmouth bass Micropterus dolomieu, white sucker Catostomus commersonii, pumpkinseed Lepomis gibbosus, and golden shiner Notemigonus crysoleucas. However, distinct fish assemblages were present among river sections bounded by dams. Many diadromous species were restricted to tidal waters downriver of the Veazie Dam; Fundulus species were also abundant within the tidal river section. Smallmouth bass and pumpkinseed were most prevalent within the Veazie Dam impoundment and the free-flowing river section immediately upriver, suggesting the importance of both types of habitat that supports multiple life stages of these species. Further upriver, brown bullhead Ameiurus nebulosus, yellow perch Perca flavescens, chain pickerel Esox niger, and cyprinid species were more prevalent than within any other river section. Our findings describe baseline spatial patterns of fish assemblages in the Penobscot River in relation to dams with which to compare assessments after dam removal occurs.

Viral infections stimulate the metabolism and shape prokaryotic assemblages in submarine mud volcanoes.

PubMed

Corinaldesi, Cinzia; Dell'Anno, Antonio; Danovaro, Roberto

2012-06-01

Mud volcanoes are geological structures in the oceans that have key roles in the functioning of the global ecosystem. Information on the dynamics of benthic viruses and their interactions with prokaryotes in mud volcano ecosystems is still completely lacking. We investigated the impact of viral infection on the mortality and assemblage structure of benthic prokaryotes of five mud volcanoes in the Mediterranean Sea. Mud volcano sediments promote high rates of viral production (1.65-7.89 × 10(9) viruses g(-1) d(-1)), viral-induced prokaryotic mortality (VIPM) (33% cells killed per day) and heterotrophic prokaryotic production (3.0-8.3 μgC g(-1) d(-1)) when compared with sediments outside the mud volcano area. The viral shunt (that is, the microbial biomass converted into dissolved organic matter as a result of viral infection, and thus diverted away from higher trophic levels) provides 49 mgC m(-2) d(-1), thus fuelling the metabolism of uninfected prokaryotes and contributing to the total C budget. Bacteria are the dominant components of prokaryotic assemblages in surface sediments of mud volcanoes, whereas archaea dominate the subsurface sediment layers. Multivariate multiple regression analyses show that prokaryotic assemblage composition is not only dependant on the geochemical features and processes of mud volcano ecosystems but also on synergistic interactions between bottom-up (that is, trophic resources) and top-down (that is, VIPM) controlling factors. Overall, these findings highlight the significant role of the viral shunt in sustaining the metabolism of prokaryotes and shaping their assemblage structure in mud volcano sediments, and they provide new clues for our understanding of the functioning of cold-seep ecosystems.

Viral infections stimulate the metabolism and shape prokaryotic assemblages in submarine mud volcanoes

PubMed Central

Corinaldesi, Cinzia; Dell'Anno, Antonio; Danovaro, Roberto

2012-01-01

Mud volcanoes are geological structures in the oceans that have key roles in the functioning of the global ecosystem. Information on the dynamics of benthic viruses and their interactions with prokaryotes in mud volcano ecosystems is still completely lacking. We investigated the impact of viral infection on the mortality and assemblage structure of benthic prokaryotes of five mud volcanoes in the Mediterranean Sea. Mud volcano sediments promote high rates of viral production (1.65–7.89 × 109 viruses g−1 d−1), viral-induced prokaryotic mortality (VIPM) (33% cells killed per day) and heterotrophic prokaryotic production (3.0–8.3 μgC g−1 d−1) when compared with sediments outside the mud volcano area. The viral shunt (that is, the microbial biomass converted into dissolved organic matter as a result of viral infection, and thus diverted away from higher trophic levels) provides 49 mgC m−2 d−1, thus fuelling the metabolism of uninfected prokaryotes and contributing to the total C budget. Bacteria are the dominant components of prokaryotic assemblages in surface sediments of mud volcanoes, whereas archaea dominate the subsurface sediment layers. Multivariate multiple regression analyses show that prokaryotic assemblage composition is not only dependant on the geochemical features and processes of mud volcano ecosystems but also on synergistic interactions between bottom-up (that is, trophic resources) and top-down (that is, VIPM) controlling factors. Overall, these findings highlight the significant role of the viral shunt in sustaining the metabolism of prokaryotes and shaping their assemblage structure in mud volcano sediments, and they provide new clues for our understanding of the functioning of cold-seep ecosystems. PMID:22170423

Shading decreases the abundance of the herbivorous California horn snail, Cerithidea californica

USGS Publications Warehouse

Lorda, Julio; Lafferty, Kevin D.

2012-01-01

Most of the intertidal zone in estuaries of California, USA and Baja California, Mexico is covered with vascular vegetation. Shading by these vascular plants influences abiotic and biotic processes that shape benthic community assemblages. We present data on the effects of shading on the California horn snail, Cerithidea californica. This species is important because it is the most common benthic macrofaunal species in these systems and acts as an obligate intermediate host of several species of rematode parasites that infect several other species. Using observational and experimental studies, we found a negative effect of shade on the distribution and abundance of the California horn snail. We hypothesized that shading reduces the abundance of the epipelic diatoms that the snails feeds on, causing snails to leave haded areas. We observed a negative relationship between vascular plant cover, sub-canopy light levels, and snail density in Mugu Lagoon. Then we experimentally manipulated light regimes, by clipping vegetation and adding shade structures, and found higher snail densities at higher light levels. In Goleta Slough, we isolated the effect of shade from vegetation by documenting a negative relationship between the shade created by two bridges and diatom and snail densities. We also found that snails moved the greatest distances over shaded channel banks compared to unshaded channel banks. Further, we documented the effect of water depth and channel bank orientation on shading in this system. An additional effect of shading is the reduction of temperature, providing an alternative explanation for some of our results. These results broaden our knowledge of how variation in the light environment influences the ecology of estuarine ecosystems.

Seagrass (Zostera marina) Colonization Promotes the Accumulation of Diazotrophic Bacteria and Alters the Relative Abundances of Specific Bacterial Lineages Involved in Benthic Carbon and Sulfur Cycling

PubMed Central

Sun, Feifei; Zhang, Xiaoli; Zhang, Qianqian; Liu, Fanghua

2015-01-01

Seagrass colonization changes the chemistry and biogeochemical cycles mediated by microbes in coastal sediments. In this study, we molecularly characterized the diazotrophic assemblages and entire bacterial community in surface sediments of a Zostera marina-colonized coastal lagoon in northern China. Higher nitrogenase gene (nifH) copy numbers were detected in the sediments from the vegetated region than in the sediments from the unvegetated region nearby. The nifH phylotypes detected were mostly affiliated with the Geobacteraceae, Desulfobulbus, Desulfocapsa, and Pseudomonas. Redundancy analysis based on terminal restriction fragment length polymorphism analysis showed that the distribution of nifH genotypes was mostly shaped by the ratio of total organic carbon to total organic nitrogen, the concentration of cadmium in the sediments, and the pH of the overlying water. High-throughput sequencing and phylogenetic analyses of bacterial 16S rRNA genes also indicated the presence of Geobacteraceae and Desulfobulbaceae phylotypes in these samples. A comparison of these results with those of previous studies suggests the prevalence and predominance of iron(III)-reducing Geobacteraceae and sulfate-reducing Desulfobulbaceae diazotrophs in coastal sedimentary environments. Although the entire bacterial community structure was not significantly different between these two niches, Desulfococcus (Deltaproteobacteria) and Anaerolineae (Chloroflexi) presented with much higher proportions in the vegetated sediments, and Flavobacteriaceae (Bacteroidetes) occurred more frequently in the bare sediments. These data suggest that the high bioavailability of organic matter (indicated by relatively lower carbon-to-nitrogen ratios) and the less-reducing anaerobic condition in vegetated sediments may favor Desulfococcus and Anaerolineae lineages, which are potentially important populations in benthic carbon and sulfur cycling in the highly productive seagrass ecosystem. PMID:26209674

Seagrass (Zostera marina) Colonization Promotes the Accumulation of Diazotrophic Bacteria and Alters the Relative Abundances of Specific Bacterial Lineages Involved in Benthic Carbon and Sulfur Cycling.

PubMed

Sun, Feifei; Zhang, Xiaoli; Zhang, Qianqian; Liu, Fanghua; Zhang, Jianping; Gong, Jun

2015-10-01

Seagrass colonization changes the chemistry and biogeochemical cycles mediated by microbes in coastal sediments. In this study, we molecularly characterized the diazotrophic assemblages and entire bacterial community in surface sediments of a Zostera marina-colonized coastal lagoon in northern China. Higher nitrogenase gene (nifH) copy numbers were detected in the sediments from the vegetated region than in the sediments from the unvegetated region nearby. The nifH phylotypes detected were mostly affiliated with the Geobacteraceae, Desulfobulbus, Desulfocapsa, and Pseudomonas. Redundancy analysis based on terminal restriction fragment length polymorphism analysis showed that the distribution of nifH genotypes was mostly shaped by the ratio of total organic carbon to total organic nitrogen, the concentration of cadmium in the sediments, and the pH of the overlying water. High-throughput sequencing and phylogenetic analyses of bacterial 16S rRNA genes also indicated the presence of Geobacteraceae and Desulfobulbaceae phylotypes in these samples. A comparison of these results with those of previous studies suggests the prevalence and predominance of iron(III)-reducing Geobacteraceae and sulfate-reducing Desulfobulbaceae diazotrophs in coastal sedimentary environments. Although the entire bacterial community structure was not significantly different between these two niches, Desulfococcus (Deltaproteobacteria) and Anaerolineae (Chloroflexi) presented with much higher proportions in the vegetated sediments, and Flavobacteriaceae (Bacteroidetes) occurred more frequently in the bare sediments. These data suggest that the high bioavailability of organic matter (indicated by relatively lower carbon-to-nitrogen ratios) and the less-reducing anaerobic condition in vegetated sediments may favor Desulfococcus and Anaerolineae lineages, which are potentially important populations in benthic carbon and sulfur cycling in the highly productive seagrass ecosystem. Copyright © 2015, American Society for Microbiology. All Rights Reserved.

Fish-assemblage variation between geologically defined regions and across a longitudinal gradient in the Monkey River Basin, Belize

USGS Publications Warehouse

Esselman, P.C.; Freeman, Mary C.; Pringle, C.M.

2006-01-01

Linkages between geology and fish assemblages have been inferred in many regions throughout the world, but no studies have yet investigated whether fish assemblages differ across geologies in Mesoamerica. The goals of our study were to: 1) compare physicochemical conditions and fish-assemblage structure across 2 geologic types in headwaters of the Monkey River Basin, Belize, and 2) describe basin-scale patterns in fish community composition and structure for the benefit of conservation efforts. We censused headwater-pool fishes by direct observation, and assessed habitat size, structure, and water chemistry to compare habitat and fish richness, diversity, evenness, and density between streams in the variably metamorphosed sedimentary geologic type typical of 80% of Belize's Maya Mountains (the Santa Rosa Group), and an anomalous extrusive geologic formation in the same area (the Bladen Volcanic Member). We also collected species-presence data from 20 sites throughout the basin for analyses of compositional patterns from the headwaters to the top of the estuary. Thirty-nine fish species in 21 families were observed. Poeciliids were numerically dominant, making up 39% of individuals captured, followed by characins (25%), and cichlids (20%). Cichlidae was the most species-rich family (7 spp.), followed by Poeciliidae (6 spp.). Habitat size and water chemistry differed strongly between geologic types, but habitat diversity did not. Major fish-assemblage differences also were not obvious between geologies, despite a marked difference in the presence of the aquatic macrophyte, Marathrum oxycarpum (Podostemaceae), which covered 37% of the stream bottom in high-nutrient streams draining the Santa Rosa Group, and did not occur in the low-P streams draining the Bladen Volcanic Member. Correlation analyses suggested that distance from the sea and amount of cover within pools are important to fish-assemblage structure, but that differing abiotic factors may influence assemblage structure within each geologic type. The fauna showed weak compositional zonation into 3 groups (headwaters, coastal plain, and nearshore). Nearly 20% of the fish species collected have migratory life cycles (including Joturus pichardi, Agonostomus monticola, and Gobiomorus dormitor) that use freshwater and marine habitats. Some of these species probably rely on a natural flow regime and longitudinal connectivity for reproduction and dispersal of young, and natural flow regime and longitudinal connectivity are important factors for maintenance of functional linkages between the uplands and the coast in the ridge-to-reef corridor where the Monkey River is located. Therefore, we suggest that the viability of migratory fish populations may be a good biological indicator of upland-to-estuary connectivity important both to fishes and coastal ecosystem function. We recommend follow-up studies to substantiate the relative strengths of relationships between community structure and abiotic factors in contrasting geologies and to examine potential bottom-up responses of stream biota to the higher nutrient levels that were observed in stream waters draining the Santa Rosa Group geologic type.

Paleobotanical analysis of materials from fossil gopher burrows and upper pleistocene host deposits, the Kolyma River lower reaches

NASA Astrophysics Data System (ADS)

Lopatina, D. A.; Zanina, O. G.

2006-10-01

The comparative analysis of palynomorphs and plant megafossils (fruits, seeds, twigs, leaves) in the Upper Pleistocene host sediments and materials filling in fossil burrows of gophers, their coprolites included, at the Duvannyi Yar, Stanchikovskii Yar and Zelenyi Mys sites of the Kolyma Lowland is carried out. Genera Salix, Lychnis, Silene, Draba, Potentilla, Larix, and families Poaceae, Polygonaceae, Cyperaceae, Compositae, and Leguminosae are determined among palynological remains and megafossils. Factors responsible for qualitative and quantitative differences in taxonomic compositions of palynological and megafossil assemblages are biological peculiarities of plants, different character of fossilization of palynomorphs and large plant remains, geographic conditions, different genesis of assemblages (allochthonous for microfossils and autochthonous for megafossils), and inadequately known morphology of certain spore and pollen taxa. The comprehensive paleobotanical analysis leads to the conclusion that the study region was occupied in the Late Pleistocene by plant communities of humid to somewhat dryer tundra with separate areas of pioneering and steppe vegetation.

Pattern of distribution and diversity of demersal assemblages in the central Mediterranean Sea

NASA Astrophysics Data System (ADS)

Colloca, F.; Cardinale, M.; Belluscio, A.; Ardizzone, G.

2003-03-01

A highly diversified mix of fish species, cephalopods and crustaceans, together with several macro-epibenthic organisms, compose trawl catches in the Mediterranean Sea. Management of Mediterranean trawling needs a multispecies approach that considers the community and not the single species as the basic unit of the analysis. While many studies have correlated several environmental factors to the spatial organizations of demersal organisms, few have focused on the role of macro-epibenthic communities in structuring demersal assemblages. In this paper, the following hypotheses were tested: (1) there are discrete demersal assemblages in the central Mediterranean Sea; (2) the distribution and diversity of demersal communities does not change on small temporal scales (1 year); (3) the demersal assemblages were segregated across both different epibenthic assemblages and depth gradients. Shallow stations were separated into coastal and middle-deep shelf assemblages while stations on the slope formed three main assemblages: slope edge, upper slope and middle slope assemblages. The demersal community did not show a substantial change at the small temporal scale. Sandy, sand-muddy and detritic epibenthic communities characterized coastal shelf assemblages, while epibenthic assemblage on muddy bottoms were dominant in the deeper areas of the shelf. A well-defined difference in macro-epibenthic faunal associations among stations on the slope (depth >200 m) was not found. Depth appeared to affect diversity of the main taxa of demersal organisms in different ways. Teleostean diversity did not show any trend with depth, the number of cephalopod species increased on the shelf and decreased on the slope while crustacean and elasmobranch species richness increased significantly from the shelf to the middle slope. The strong correlation shown in this study between epifaunal benthic communities and demersal fish assemblages requires the formulation of an ecosystem-based management for the Mediterranean Sea trawl fisheries. The existence of such biological diversity certainly contributes to the Mediterranean ecosystem health and its conservation should become one of the main objective of demersal resources management in the future.

Abundance and Diversity of Crypto- and Necto-Benthic Coastal Fish Are Higher in Marine Forests than in Structurally Less Complex Macroalgal Assemblages.

PubMed

Thiriet, Pierre D; Di Franco, Antonio; Cheminée, Adrien; Guidetti, Paolo; Bianchimani, Olivier; Basthard-Bogain, Solène; Cottalorda, Jean-Michel; Arceo, Hazel; Moranta, Joan; Lejeune, Pierre; Francour, Patrice; Mangialajo, Luisa

2016-01-01

In Mediterranean subtidal rocky reefs, Cystoseira spp. (Phaeophyceae) form dense canopies up to 1 m high. Such habitats, called 'Cystoseira forests', are regressing across the entire Mediterranean Sea due to multiple anthropogenic stressors, as are other large brown algae forests worldwide. Cystoseira forests are being replaced by structurally less complex habitats, but little information is available regarding the potential difference in the structure and composition of fish assemblages between these habitats. To fill this void, we compared necto-benthic (NB) and crypto-benthic (CB) fish assemblage structures between Cystoseira forests and two habitats usually replacing the forests (turf and barren), in two sampling regions (Corsica and Menorca). We sampled NB fish using Underwater Visual Census (UVC) and CB fish using Enclosed Anaesthetic Station Vacuuming (EASV), since UVC is known to underestimate the diversity and density of the 'hard to spot' CB fish. We found that both taxonomic diversity and total density of NB and CB fish were highest in Cystoseira forests and lowest in barrens, while turfs, that could be sampled only at Menorca, showed intermediate values. Conversely, total biomass of NB and CB fish did not differ between habitats because the larger average size of fish in barrens (and turfs) compensated for their lower densities. The NB families Labridae and Serranidae, and the CB families Blenniidae, Cliniidae, Gobiidae, Trypterigiidae and Scorpaenidae, were more abundant in forests. The NB taxa Diplodus spp. and Thalassoma pavo were more abundant in barrens. Our study highlights the importance of using EASV for sampling CB fish, and shows that Cystoseira forests support rich and diversified fish assemblages. This evidence suggests that the ongoing loss of Cystoseira forests may impair coastal fish assemblages and related goods and services to humans, and stresses the need to implement strategies for the successful conservation and/or recovery of marine forests.

Abundance and Diversity of Crypto- and Necto-Benthic Coastal Fish Are Higher in Marine Forests than in Structurally Less Complex Macroalgal Assemblages

PubMed Central

Thiriet, Pierre D.; Cheminée, Adrien; Guidetti, Paolo; Bianchimani, Olivier; Basthard-Bogain, Solène; Cottalorda, Jean-Michel; Arceo, Hazel; Moranta, Joan; Lejeune, Pierre; Francour, Patrice; Mangialajo, Luisa

2016-01-01

In Mediterranean subtidal rocky reefs, Cystoseira spp. (Phaeophyceae) form dense canopies up to 1 m high. Such habitats, called ‘Cystoseira forests’, are regressing across the entire Mediterranean Sea due to multiple anthropogenic stressors, as are other large brown algae forests worldwide. Cystoseira forests are being replaced by structurally less complex habitats, but little information is available regarding the potential difference in the structure and composition of fish assemblages between these habitats. To fill this void, we compared necto-benthic (NB) and crypto-benthic (CB) fish assemblage structures between Cystoseira forests and two habitats usually replacing the forests (turf and barren), in two sampling regions (Corsica and Menorca). We sampled NB fish using Underwater Visual Census (UVC) and CB fish using Enclosed Anaesthetic Station Vacuuming (EASV), since UVC is known to underestimate the diversity and density of the ‘hard to spot’ CB fish. We found that both taxonomic diversity and total density of NB and CB fish were highest in Cystoseira forests and lowest in barrens, while turfs, that could be sampled only at Menorca, showed intermediate values. Conversely, total biomass of NB and CB fish did not differ between habitats because the larger average size of fish in barrens (and turfs) compensated for their lower densities. The NB families Labridae and Serranidae, and the CB families Blenniidae, Cliniidae, Gobiidae, Trypterigiidae and Scorpaenidae, were more abundant in forests. The NB taxa Diplodus spp. and Thalassoma pavo were more abundant in barrens. Our study highlights the importance of using EASV for sampling CB fish, and shows that Cystoseira forests support rich and diversified fish assemblages. This evidence suggests that the ongoing loss of Cystoseira forests may impair coastal fish assemblages and related goods and services to humans, and stresses the need to implement strategies for the successful conservation and/or recovery of marine forests. PMID:27760168

Persistence of an unusual pelagic zooplankton assemblage in a clear, mountain lake

USGS Publications Warehouse

Larson, G.L.; Hoffman, R.L.; C. David, McIntire

2002-01-01

The planktonic zooplankton assemblage in Mowich Lake, Mount Rainier National Park (MORA), was composed almost entirely of rotifers in 1966 and 1967. Adult pelagic crustacean taxa were rare. Their paucity was attributed to predation by kokanee salmon (Oncorhynchus nerka), which had been stocked in 1961. During a park-wide survey of 24 lakes in 1988, Mowich Lake was the only one that did not contain at least one planktonic crustacean species. Given the apparent persistence of the unusual pelagic zooplankton assemblage in Mowich Lake, the first objective of this study was to document the interannual variation in the taxonomic structure of the zooplankton assemblages in the lake from 1988 through 1999. A second objective was to determine if it was possible to predict the taxonomic composition of the pelagic crustacean zooplankton assemblage in Mowich Lake prior to the stocking of kokanee salmon. The Mowich Lake zooplankton assemblages in 1988-1999 were consistent with those in 1966 and 1967. Crustacean taxa were extremely rare, but they included most of the primary taxa collected from 23 MORA lakes surveyed in 1988. Nonetheless, the 1988 collections showed that the September rotifer assemblage in Mowich Lake was similar to 10 of the 24 lakes sampled. Seven of the 10 lakes were dominated by cladocerans, primarily Daphnia rosea and Holopedium gibberum. Therefore, it appeared that either one or both of these species may have numerically dominated the crustacean zooplankton assemblage in the lake prior to 1961.

Persistence of an unusual pelagic zooplankton assemblage in a clear mountain lake

USGS Publications Warehouse

Larson, Gary L.; Hoffman, Robert L.; McIntire, C.D.

2002-01-01

The planktonic zooplankton assemblage in Mowich Lake, Mount Rainier National Park (MORA), was composed almost entirely of rotifers in 1966 and 1967. Adult pelagic crustacean taxa were rare. Their paucity was attributed to predation by kokanee salmon (Oncorhynchus nerka), which had been stocked in 1961. During a park-wide survey of 24 lakes in 1988, Mowich Lake was the only one that did not contain at least one planktonic crustacean species. Given the apparent persistence of the unusual pelagic zooplankton assemblage in Mowich Lake, the first objective of this study was to document the interannual variation in the taxonomic structure of the zooplankton assemblages in the lake from 1988 through 1999. A second objective was to determine if it was possible to predict the taxonomic composition of the pelagic crustacean zooplankton assemblage in Mowich Lake prior to the stocking of kokanee salmon. The Mowich Lake zooplankton assemblages in 1988a??1999 were consistent with those in 1966 and 1967. Crustacean taxa were extremely rare, but they included most of the primary taxa collected from 23 MORA lakes surveyed in 1988. Nonetheless, the 1988 collections showed that the September rotifer assemblage in Mowich Lake was similar to 10 of the 24 lakes sampled. Seven of the 10 lakes were dominated by cladocerans, primarily Daphnia rosea and Holopedium gibberum. Therefore, it appeared that either one or both of these species may have numerically dominated the crustacean zooplankton assemblage in the lake prior to 1961.

Mosquito (Diptera: Culicidae) assemblages associated with Nidularium and Vriesea bromeliads in Serra do Mar, Atlantic Forest, Brazil

PubMed Central

2012-01-01

Background The most substantial and best preserved area of Atlantic Forest is within the biogeographical sub-region of Serra do Mar. The topographic complexity of the region creates a diverse array of microclimates, which can affect species distribution and diversity inside the forest. Given that Atlantic Forest includes highly heterogeneous environments, a diverse and medically important Culicidae assemblage, and possible species co-occurrence, we evaluated mosquito assemblages from bromeliad phytotelmata in Serra do Mar (southeastern Brazil). Methods Larvae and pupae were collected monthly from Nidularium and Vriesea bromeliads between July 2008 and June 2009. Collection sites were divided into landscape categories (lowland, hillslope and hilltop) based on elevation and slope. Correlations between bromeliad mosquito assemblage and environmental variables were assessed using multivariate redundancy analysis. Differences in species diversity between bromeliads within each category of elevation were explored using the Renyi diversity index. Univariate binary logistic regression analyses were used to assess species co-occurrence. Results A total of 2,024 mosquitoes belonging to 22 species were collected. Landscape categories (pseudo-F value = 1.89, p = 0.04), bromeliad water volume (pseudo-F = 2.99, p = 0.03) and bromeliad fullness (Pseudo-F = 4.47, p < 0.01) influenced mosquito assemblage structure. Renyi diversity index show that lowland possesses the highest diversity indices. The presence of An. homunculus was associated with Cx. ocellatus and the presence of An. cruzii was associated with Cx. neglectus, Cx. inimitabilis fuscatus and Cx. worontzowi. Anopheles cruzii and An. homunculus were taken from the same bromeliad, however, the co-occurrence between those two species was not statistically significant. Conclusions One of the main findings of our study was that differences in species among mosquito assemblages were influenced by landscape characteristics. The bromeliad factor that influenced mosquito abundance and assemblage structure was fullness. The findings of the current study raise important questions about the role of An. homunculus in the transmission of Plasmodium in Serra do Mar, southeastern Atlantic Forest. PMID:22340486

Mosquito (Diptera: Culicidae) assemblages associated with Nidularium and Vriesea bromeliads in Serra do Mar, Atlantic Forest, Brazil.

PubMed

Marques, Tatiani C; Bourke, Brian P; Laporta, Gabriel Z; Sallum, Maria Anice Mureb

2012-02-16

The most substantial and best preserved area of Atlantic Forest is within the biogeographical sub-region of Serra do Mar. The topographic complexity of the region creates a diverse array of microclimates, which can affect species distribution and diversity inside the forest. Given that Atlantic Forest includes highly heterogeneous environments, a diverse and medically important Culicidae assemblage, and possible species co-occurrence, we evaluated mosquito assemblages from bromeliad phytotelmata in Serra do Mar (southeastern Brazil). Larvae and pupae were collected monthly from Nidularium and Vriesea bromeliads between July 2008 and June 2009. Collection sites were divided into landscape categories (lowland, hillslope and hilltop) based on elevation and slope. Correlations between bromeliad mosquito assemblage and environmental variables were assessed using multivariate redundancy analysis. Differences in species diversity between bromeliads within each category of elevation were explored using the Renyi diversity index. Univariate binary logistic regression analyses were used to assess species co-occurrence. A total of 2,024 mosquitoes belonging to 22 species were collected. Landscape categories (pseudo-F value = 1.89, p = 0.04), bromeliad water volume (pseudo-F = 2.99, p = 0.03) and bromeliad fullness (Pseudo-F = 4.47, p < 0.01) influenced mosquito assemblage structure. Renyi diversity index show that lowland possesses the highest diversity indices. The presence of An. homunculus was associated with Cx. ocellatus and the presence of An. cruzii was associated with Cx. neglectus, Cx. inimitabilis fuscatus and Cx. worontzowi. Anopheles cruzii and An. homunculus were taken from the same bromeliad, however, the co-occurrence between those two species was not statistically significant. One of the main findings of our study was that differences in species among mosquito assemblages were influenced by landscape characteristics. The bromeliad factor that influenced mosquito abundance and assemblage structure was fullness. The findings of the current study raise important questions about the role of An. homunculus in the transmission of Plasmodium in Serra do Mar, southeastern Atlantic Forest.

Habitat Specialization in Tropical Continental Shelf Demersal Fish Assemblages

PubMed Central

Fitzpatrick, Ben M.; Harvey, Euan S.; Heyward, Andrew J.; Twiggs, Emily J.; Colquhoun, Jamie

2012-01-01

The implications of shallow water impacts such as fishing and climate change on fish assemblages are generally considered in isolation from the distribution and abundance of these fish assemblages in adjacent deeper waters. We investigate the abundance and length of demersal fish assemblages across a section of tropical continental shelf at Ningaloo Reef, Western Australia, to identify fish and fish habitat relationships across steep gradients in depth and in different benthic habitat types. The assemblage composition of demersal fish were assessed from baited remote underwater stereo-video samples (n = 304) collected from 16 depth and habitat combinations. Samples were collected across a depth range poorly represented in the literature from the fringing reef lagoon (1–10 m depth), down the fore reef slope to the reef base (10–30 m depth) then across the adjacent continental shelf (30–110 m depth). Multivariate analyses showed that there were distinctive fish assemblages and different sized fish were associated with each habitat/depth category. Species richness, MaxN and diversity declined with depth, while average length and trophic level increased. The assemblage structure, diversity, size and trophic structure of demersal fishes changes from shallow inshore habitats to deeper water habitats. More habitat specialists (unique species per habitat/depth category) were associated with the reef slope and reef base than other habitats, but offshore sponge-dominated habitats and inshore coral-dominated reef also supported unique species. This suggests that marine protected areas in shallow coral-dominated reef habitats may not adequately protect those species whose depth distribution extends beyond shallow habitats, or other significant elements of demersal fish biodiversity. The ontogenetic habitat partitioning which is characteristic of many species, suggests that to maintain entire species life histories it is necessary to protect corridors of connected habitats through which fish can migrate. PMID:22761852

Are Organic Falls Bridging Reduced Environments in the Deep Sea? - Results from Colonization Experiments in the Gulf of Cádiz

PubMed Central

Cunha, Marina R.; Matos, Fábio L.; Génio, Luciana; Hilário, Ana; Moura, Carlos J.; Ravara, Ascensão; Rodrigues, Clara F.

2013-01-01

Organic falls create localised patches of organic enrichment and disturbance where enhanced degradation is mediated by diversified microbial assemblages and specialized fauna. The view of organic falls as “stepping stones” for the colonization of deep-sea reducing environments has been often loosely used, but much remains to be proven concerning their capability to bridge dispersal among such environments. Aiming the clarification of this issue, we used an experimental approach to answer the following questions: Are relatively small organic falls in the deep sea capable of sustaining taxonomically and trophically diverse assemblages over demographically relevant temporal scales? Are there important depth- or site-related sources of variability for the composition and structure of these assemblages? Is the proximity of other reducing environments influential for their colonization? We analysed the taxonomical and trophic diversity patterns and partitioning (α- and β-diversity) of the macrofaunal assemblages recruited in small colonization devices with organic and inorganic substrata after 1-2 years of deployment on mud volcanoes of the Gulf of Cádiz. Our results show that small organic falls can sustain highly diverse and trophically coherent assemblages for time periods allowing growth to reproductive maturity, and successive generations of dominant species. The composition and structure of the assemblages showed variability consistent with their biogeographic and bathymetric contexts. However, the proximity of cold seeps had limited influence on the similarity between the assemblages of these two habitats and organic falls sustained a distinctive fauna with dominant substrate-specific taxa. We conclude that it is unlikely that small organic falls may regularly ensure population connectivity among cold seeps and vents. They may be a recurrent source of evolutionary candidates for the colonization of such ecosystems. However, there may be a critical size of organic fall to create the necessary intense and persistent reducing conditions for sustaining typical chemosymbiotic vent and seep organisms. PMID:24098550

Temporal and spatial variability of pelagic wild fish assemblages around Atlantic bluefin tuna Thunnus thynnus farms in the eastern Adriatic Sea.

PubMed

Segvić Bubić, T; Grubišić, L; Tičina, V; Katavić, I

2011-01-01

The abundance and size structure of wild fishes aggregated around the sea-cages of two commercial Thunnus thynnus farms, including control locations, were assessed and compared over a 1 year period. The T. thynnus farms were located in the eastern Adriatic Sea, offshore of the islands of Ugljan and Brač. Fish assemblages were evaluated through visual census using scuba at 2 month intervals at two sites within each farm. The data suggest that wild fish assemblages at the study sites differed greatly; 20 species occurred at the Ugljan farm and 17 at the Brač farm, while only seven species were observed at the control locations. The abundance and diversity of wild fish assemblages were greater at the farms in comparison to control locations. The most abundant families were Sparidae and Belonidae (>80% of aggregated fishes). At both farms, the abundance and diversity of wild fishes were highest during summer, while diversity was lowest in winter and was mainly characterized by schools of bogue Boops boops and garfish Belone belone. Variability was also detected in spatial assemblages between farms; B. boops and B. belone were the most abundant species for the overall study at the Brač farm, while B. belone and saddled bream Oblada melanura were the most abundant at the Ugljan farm. The settlement also played a significant role in farm-associated fish assemblages, as both juveniles and advanced juveniles were common residents at farms. The majority of species which settled at the farms belonged to the sparids. Results indicate that aggregations of wild fishes at T. thynnus farms are persistent year-round, though the assemblage compositions and size structures of dominant species vary in respect to location and season. © 2011 The Authors. Journal of Fish Biology © 2011 The Fisheries Society of the British Isles.

A new third-order sequence stratigraphic framework applied to the Triassic of the Paraná Basin, Rio Grande do Sul, Brazil, based on structural, stratigraphic and paleontological data

NASA Astrophysics Data System (ADS)

Horn, B. L. D.; Melo, T. M.; Schultz, C. L.; Philipp, R. P.; Kloss, H. P.; Goldberg, K.

2014-11-01

The Santacruzodon assemblage zone was originally defined as a vertebrate fossil assemblage composed basically of non-mammalian cynodonts found in Santa Cruz do Sul and Venâncio Aires municipalities in Southern Brazil. This assemblage zone was positioned at the top of the Sequence I, in the Triassic Santa Maria Supersequence, Paraná Basin. However, the Santacruzodon assemblage zone does not occur across the entire area of the Santa Maria Supersequence. Based on new paleontological, structural and sedimentological data, we propose the existence of a new third-order sequence (Santa Cruz Sequence) between Sequences I and II in the Santa Maria Supersequence. Satellite image analysis was used to identify regional, NW- and NE-oriented lineaments that limit the occurrence zone. Outcrop data allowed the identification of a regional, angular unconformity that bounds the new sequence. The faunal content allowed the correlation of the new Santa Cruz Sequence with Madagascar's Isalo II fauna, corresponding to the Ladinian (Middle Triassic). New names were suggested for the sequences in the Santa Maria Supersequence, since the Santa Cruz Sequence was deposited between the former Sequences I and II. This unit was deposited or preserved exclusively on the hanging wall of normal faults, being absent from the adjacent structural blocks.

Fish assemblage shifts in the Powder River of Wyoming: an unregulated prairie river system previously considered to be relatively pristine.

USGS Publications Warehouse

Senecal, Anna C.; Walters, Annika W.; Hubert, Wayne A.

2016-01-01

Wyoming’s Powder River is considered an example of a pristine prairie river system. While the river hosts a largely native fish assemblage and remains unimpounded over its 1,146-km course to the Yellowstone River confluence, the hydrologic regime has been altered through water diversion for agriculture and natural gas extraction and there has been limited study of fish assemblage structure. We analyzed fish data collected from the mainstem Powder River in Wyoming between 1896 and 2008. Shifts in presence/absence and relative abundance of fish species, as well as fish assemblage composition, were assessed among historical and recent samples. The recent Powder River fish assemblage was characterized by increased relative abundances of sand shiner Notropis stramineus and plains killifish Fundulus zebrinus, and decreases in sturgeon chub Macrhybopsis gelida. Shifts in fish species relative abundance are linked to their reproductive ecology with species with adhesive eggs generally increasing in relative abundance while those with buoyant drifting eggs are decreasing. Assemblage shifts could be the result of landscape level changes, such as the loss of extreme high and low flow events and changing land use practices.

Holocene paleoenvironments of Northeast Iowa

USGS Publications Warehouse

Baker, R.G.; Bettis, E. Arthur; Schwert, D.R.; Horton, D.G.; Chumbley, C.A.; Gonzalez, Luis A.; Reagan, M.K.

1996-01-01

This paper presents the biotic. sedimentary, geomorphic, and climatic history of the upper part of the Roberts Creek Basin, northeastern Iowa for the late-glacial and Holocene, and compares these records with a C-O isotopic sequence from Coldwater Cave. 60 km northwest of Roberts Creek. The biotic record (pollen, vascular plant and bryophyle macrofossils. and insects) is preserved in floodplain alluvium that underlies three constructional surfaces separated by low scarps. Each surface is underlain by a lithologically and temporally distinct alluvial fill. The highest surface is underlain by the Gunder Member of the Deforest Formation, dating from 11 000 to 4000 yr BP; beneath the intermediate level is the Roberts Creek Member, dating from 4000 to 400 yr BP; and the lowest level is underlain by the Camp Creek Member, deposited during the last 380 yr. Pollen and plant macrofossils in the alluvial fill show that a typical late-glacial spruce forest was replaced by Quercus and Ulmus in the early Holocene. This early-to-middle Holocene forest became dominated by mesic elements such as Acer saccharum, Tilia americana, Ostrya virginiana, and Carpinus caroliniana as late as 5500 yr BP; in contrast, the closest sites to the west and north were at their warmest and driest and were covered by prairie vegetation between 6500 and 5500 yr BP. After 5500 yr BP, the forest in the Roberts Creek area was replaced by prairie, as indicated by a rich assemblage of plant macrofossils, although only Ambrosia and Poaceae became abundant in the pollen record. The return of Quercus ??? 3000 BP (while nonarboreal pollen percentages remained relatively high) indicates that oak savanna prevailed with little change until settlement time. The bryophyte assemblages strongly support the vascular plant record. Rich fen species characteristic of boreal habitats occur only in the late-glacial. They are replaced by a number of deciduous-forest elements when early-to-middle Holocene forests were present, but mosses of forest habitats completely disappear when prairie became dominant. A few deciduousforest taxa return during the late-Holocene, when oak savanna prevailed. The C-O isotopic record from stalagmite "s" in Coldwater Cave indicates a relatively stable environment from ??? 8000 to 5100 yr BP, when the 813C values indicate a change in vegetation dominated by C3 (predominantly forest) to C4 (predominantly prairie) plants. About 4900 yr BP, the rise in 18O values indicates a temperature increase of ??? 1.5??C. The fact that the vegetational change suggested by the ??13C values preceded the temperature increase suggests that fire may have been an important factor in converting forest to prairie. Abundant charred seeds and other plant material at Roberts Creek 4830 yr BP support this hypothesis. The 18O values remain constant from ???5100 to ???3000 yr BP. but the ??13C values gradually rise, indicating that soil formed under forest takes at least 2000 yr for its carbon to reach equilibrium after replacement by prairie vegetation. The return of oak to form savanna is reflected in the gradual decline of ??13C values in the last 3000 yr BP: O isotopic values drop sharply by ??? 1??C ??? 2800 yr BP and then were relatively stable. In contrast to the vegetational and isotopic records, the insect assemblages suggest little change in the local environments throughout most of the Holocene. All of the beetle taxa presently occur in eastern Iowa. The relative stability through the Holocene indicates that both open grassland and riparian woodland elements were present throughout. Settlement, land clearing, and land cultivation by EuroAmericans in the region caused rapid erosion of the upland landscape, the deposition of 1-2 m of sediment across the floodplain, a replacement of the native vegetation with ruderal species, a decimation of the native insect fauna, and a degradation of water quality in the stream. These changes in the landscape, vegetation, and insect faunas

Late Frasnian-Famennian climates based on palynomorph analyses and the question of the Late Devonian glaciations

NASA Astrophysics Data System (ADS)

Streel, Maurice; Caputo, Mário V.; Loboziak, Stanislas; Melo, José Henrique G.

2000-11-01

Palynomorph distribution in Euramerica and western Gondwana, from the Latest Givetian to the Latest Famennian, may be explained, to some extent, by climatic changes. Detailed miospore stratigraphy dates accurately the successive steps of these changes. Interpretation is built on three postulates which are discussed: Euramerica at slightly lower latitudes than generally accepted by most paleomagnetic reconstructions; a conodont time-scale accepted as the most used available subdivision of time; and Late Devonian sea-level fluctuations mainly governed by glacio-eustasy. The Frasnian-Famennian timescale is also evaluated. The comparison, based on conodont correlations, between Givetian and most of the Frasnian miospore assemblages from, respectively, northern and southern Euramerica demonstrates a high taxonomic diversity in the equatorial belt and much difference between supposed equatorial and (sub) tropical vegetations. On the contrary, a similar vegetation pattern and therefore probably compatible climatic conditions were present from tropical to subpolar areas. A rather hot climate culminated during the Latest Frasnian when equatorial miospore assemblages reached their maximum width. The miospore diversity shows also a rather clear global Late Frasnian minimum which is also recorded during the Early and Middle Famennian but only in low latitude regions while, in high latitude, very cold climates without perennial snow may explain the scarcity of miospores and so, of vegetation. The Early and Middle Famennian conspicuous latitudinal gradient of the vegetation seems to attenuate towards the Late and Latest Famennian but this might be above all the result of the development, of cosmopolitan coastal lowland vegetations (downstream swamps) depending more on the moisture and equable local microclimates than on the probably adverse climates of distant hinterland areas. During that time, periods of cold climate without perennial snow cover and with rare vegetation may have alternated with less cold but wetter climates, thus giving rise to the development of mountain glaciers in high latitudes and explaining the jerking character of the global major marine regression. In high latitude regions, the development of an ice cap reaching sea level is only recorded by the end of the Latest Famennian, immediately below the DCB but, even if glacial evidences are not known at near the FFB, a short (0.1 Ma?) glaciation seems the best reasonable explanation of the major eustatic fall following the Kellwasser Event. The sudden growth and decay of a hypothetical Earliest Famennian ice sheet can be explained by the reduction and, later, increase in greenhouse capacity of the atmosphere. These changes in the atmospheric CO 2 might have provoked changes in the mode of ocean-atmosphere operation. It may also be partly controlled by a volcanic paroxysm and/or bolide impacts. The Hony microtektites represent the best known evidence of the impact of extraterrestrial bodies on Earth corresponding to the UKW, and they are immediately followed by a regression, suggested by the quantitative analysis of acritarch assemblages. In the paleo-tropical Late Famennian, a peat-forming vascular plant community occurs for the first time and makes possible quantitative palynology of autochthonous sediments allowing the recognition of different swamp and near-swamp characteristic miospores. The early Latest Famennian starts with a widespread transgression which could correspond to the melting phases of the hypothetical Late Famennian mountain glaciers. During the end-Famennian, the coastal lowland vegetation has a worldwide distribution from sub-polar to equatorial regions. The climate has become less cold in high latitudes but wetter than before probably because the midlatitude cyclonic activity allows sufficient polar transportation of moisture to form large snow cover. Extensive coastal glaciers developed in different Bolivian and Brazilian basins, well dated by miospores. Rapid climatic changes characterize the onset of glaciation. The cyclic nature of climate allowed even intertropical marine faunas to reach occasionally the subpolar regions. For the plant kingdom, the crisis which follows the Hangenberg Event was more severe than the Late Frasnian Crisis.

Temporal variation in plankton assemblages and physicochemistry of Devils Lake, North Dakota

USGS Publications Warehouse

Leland, H.V.; Berkas, W.R.

1998-01-01

Seasonal and annual variation in biomass and structure of algal assemblages of hyposaline Devils Lake were examined in relation to turbidity, ambient concentrations of major ions, trace elements and nutrients, and the standing crop of herbivores. Lake level declined during the early years of study, but rose markedly in subsequent years as historically large volumes of water flowed into this hydrologically-closed basin. Winter algal assemblages were dominated (in biomass) most years by small, non-motile chlorophytes ( Choricystis minor, Kirchneriella lunaris or Dunaliella sp.), or Euglena sp. in the most saline sub-basin. Spring assemblages were dominated by diatoms (Stephanodiscus cf. minutulus, Surirella peisonis, Cyclotella meneghiniana and Entomoneis paludosa were especially prominent) or chlorophytes ( C. minor) until the lake level rose. C. minor abundances then declined in spring assemblages and diatoms ( Stephanodiscus cf. agassizensis and S. niagarae; E. paludosa in the more saline sub-basins) dominated. The potential for nitrogen-deficient conditions for phytoplankton growth was evidenced most summers and early autumns by consistently high concentrations of reactive-P relative to inorganic-N and blooms of the N-fixing cyanophyte Aphanizomenon flos-aquae; Microcystis aeruginosa typically was a co-dominant (>30% of biomass) in these assemblages. Pulses of diatoms ( S. cf. agassizensis and C. meneghiniana) occurred in summers following unusually prolonged periods of calm weather or large water inflows. Physical (irradiance, turbulence) and chemical (major nutrients) variables were the primary factors associated with phytoplankton growth. Transparency and major nutrient concentrations accounted for more of the annual variation in phytoplankton structure than did salinity. Seasonal abundance patterns of the dominant zooplankton (the copepod Diaptomus sicilis; the cladocerans Ceriodaphnia quadrangula, Chydorus sphaericus, Daphnia pulex and Diaphanosoma birgei; and the rotifers Brachionus spp., Filinia longiseta, Keratella cochlearis and K. quadrata) also indicated variation in algal populations related to grazing.

[Effects of cascading hydropower dams operation on the structure and distribution pattern of benthic macroinvertebrate assemblages in Manwan Reservoir, Southwest China].

PubMed

Li, Jin Peng; Dong, Shi Kui; Peng, Ming Chun; Wu, Xuan; Zhou, Fang; Yu, Yin

2017-12-01

Benthic macroinvertebrate assemblages are one of the biological groups in aquatic ecosystem most sensitive to the habitat change and degradation, and can be a biological indicator for the aquatic ecosystem change and succession in cascading hydropower dam reservoir. The middle and lower reaches of the Lancang River are key spot for international biodiversity conservation and ecological studies on the effects of cascading hydropower dam exploitation. In this study, the reservoir of Manwan hydropower dam, the first dam in Lancang-Mekong river main stream, was selected as the study site. The benthic macroinvertebrate assemblages were sampled in 2011 and 2016 respectively. Meanwhile, the survey data before impounding (natural river, 1996) and early stage of single dam (1997) were collected to conduct the overall analysis for structure, distribution pattern and evolution of benthic macroinvertebrate assemblages. The results showed that the dominant biological group was gradually changed from the Oligochaeta and Insecta to the Mollusca. Along the longitudinal gradient, the density and biomass of the benthic macroinvertebrate assemblages were remarkably increased in reservoir, especially in the lacustrine zone. As for the functional feeding group, the predator and gatherer-collector changed into filter-collector predominantly in lacustrine zone. With the cascading dams operation, the biotic index indicated that the water quality of reservoir in 2016 was better than in 2011. The evolution of benthic macroinvertebrate assemblages in the Manwan Reservoir was related to the operation of Xiaowan dam in the upper reach, the hydrological regime and siltation in the reservoir, and would continue with dynamic changes with the operation of the cascading hydropower dam.

Fisheries Resource Utilization of an Estuarine Borrow Pit in Mobile Bay, Alabama

DTIC Science & Technology

2014-07-01

sampling indicated that both holes supported impoverished benthic assemblages comprised largely of opportunistic, disturbance- adapted infauna. Species...impoverished benthic assemblages comprised largely of opportunistic, disturbance- adapted infauna. The structure of the benthic communities differed...Total % AN Total % BN Gastropod - - - - - - 1 0.3 1 0.07 Total Animals 600 - 20 - 467 - 380 - 1467 - Average. # Animals 120 - 4 - 156 - 126

Streamflow characteristics and benthic invertebrate assemblages in streams across the western United States

USGS Publications Warehouse

Brasher, Anne M.D.; Konrad, Chris P.; May, Jason T.; Edmiston, C. Scott; Close, Rebecca N.

2010-01-01

Hydrographic characteristics of streamflow, such as high-flow pulses, base flow (background discharge between floods), extreme low flows, and floods, significantly influence aquatic organisms. Streamflow can be described in terms of magnitude, timing, duration, frequency, and variation (hydrologic regime). These characteristics have broad effects on ecosystem productivity, habitat structure, and ultimately on resident fish, invertebrate, and algae communities. Increasing human use of limited water resources has modified hydrologic regimes worldwide. Identifying the most ecologically significant hydrographic characteristics would facilitate the development of water-management strategies.Benthic invertebrates include insects, mollusks (snails and clams), worms, and crustaceans (shrimp) that live on the streambed. Invertebrates play an important role in the food web, consuming other invertebrates and algae and being consumed by fish and birds. Hydrologic alteration associated with land and water use can change the natural hydrologic regime and may affect benthic invertebrate assemblage composition and structure through changes in density of invertebrates or taxa richness (number of different species).This study examined associations between the hydrologic regime and characteristics of benthic invertebrate assemblages across the western United States and developed tools to identify streamflow characteristics that are likely to affect benthic invertebrate assemblages.

Linking the community structure of arbuscular mycorrhizal fungi and plants: a story of interdependence?

PubMed Central

Horn, Sebastian; Hempel, Stefan; Verbruggen, Erik; Rillig, Matthias C; Caruso, Tancredi

2017-01-01

Arbuscular mycorrhizal fungi (AMF) are crucial to plants and vice versa, but little is known about the factors linking the community structure of the two groups. We investigated the association between AMF and the plant community structure in the nearest neighborhood of Festuca brevipila in a semiarid grassland with steep environmental gradients, using high-throughput sequencing of the Glomeromycotina (former Glomeromycota). We focused on the Passenger, Driver and Habitat hypotheses: (i) plant communities drive AMF (passenger); (ii) AMF communities drive the plants (driver); (iii) the environment shapes both communities causing covariation. The null hypothesis is that the two assemblages are independent and this study offers a spatially explicit novel test of it in the field at multiple, small scales. The AMF community consisted of 71 operational taxonomic units, the plant community of 47 species. Spatial distance and spatial variation in the environment were the main determinants of the AMF community. The structure of the plant community around the focal plant was a poor predictor of AMF communities, also in terms of phylogenetic community structure. Some evidence supports the passenger hypothesis, but the relative roles of the factors structuring the two groups clearly differed, leading to an apparent decoupling of the two assemblages at the relatively small scale of this study. Community phylogenetic structure in AMF suggests an important role of within-assemblage interactions. PMID:28244977

Linking the community structure of arbuscular mycorrhizal fungi and plants: a story of interdependence?

PubMed

Horn, Sebastian; Hempel, Stefan; Verbruggen, Erik; Rillig, Matthias C; Caruso, Tancredi

2017-06-01

Arbuscular mycorrhizal fungi (AMF) are crucial to plants and vice versa, but little is known about the factors linking the community structure of the two groups. We investigated the association between AMF and the plant community structure in the nearest neighborhood of Festuca brevipila in a semiarid grassland with steep environmental gradients, using high-throughput sequencing of the Glomeromycotina (former Glomeromycota). We focused on the Passenger, Driver and Habitat hypotheses: (i) plant communities drive AMF (passenger); (ii) AMF communities drive the plants (driver); (iii) the environment shapes both communities causing covariation. The null hypothesis is that the two assemblages are independent and this study offers a spatially explicit novel test of it in the field at multiple, small scales. The AMF community consisted of 71 operational taxonomic units, the plant community of 47 species. Spatial distance and spatial variation in the environment were the main determinants of the AMF community. The structure of the plant community around the focal plant was a poor predictor of AMF communities, also in terms of phylogenetic community structure. Some evidence supports the passenger hypothesis, but the relative roles of the factors structuring the two groups clearly differed, leading to an apparent decoupling of the two assemblages at the relatively small scale of this study. Community phylogenetic structure in AMF suggests an important role of within-assemblage interactions.

Littoral fish assemblages of the alien-dominated Sacramento-San Joaquin Delta, California, 1980-1983 and 2001-2003

USGS Publications Warehouse

Brown, L.R.; Michniuk, D.

2007-01-01

We analyzed monthly boat electrofishing data to characterize the littoral fish assemblages of five regions of the Sacramento-San Joaquin Delta (northern, southern, eastern, western, and central), California, during two sampling periods, 1980-1983 (1980s) and 2001-2003 (2000s), to provide information pertinent to the restoration of fish populations in this highly altered estuary. During the 1980s, almost 11,000 fish were captured, including 13 native species and 24 alien species. During the 2000s, just over 39,000 fish were captured, including 15 native species and 24 alien species. Catch per unit effort (CPUE) of total fish, alien fish, and centrarchid fish were greater in the 2000s compared with the 1980s, largely because of increased centrarchid fish CPUE. These differences in CPUE were associated with the spread of submerged aquatic vegetation (SAV), particularly an alien aquatic macrophyte Egeria densa. Native fish CPUE declined from the 1980s to the 2000s, but there was no single factor that could explain the decline. Native fish were most abundant in the northern region during both sampling periods. Nonmetric multidimensional scaling indicated similar patterns of fish assemblage composition during the two sampling periods, with the northern and western regions characterized by the presence of native species. The separation of the northern and western regions from the other regions was most distinct in the 2000s. Our results suggest that native fish restoration efforts will be most successful in the northern portion of the Delta. Management decisions on the Delta should include consideration of possible effects on SAV in littoral habitats and the associated fish assemblages and ecological processes. ?? 2007 Estuarine Research Federation.

Dietary traits of the ungulates from the HWK EE site at Olduvai Gorge (Tanzania): Diachronic changes and seasonality.

PubMed

Rivals, Florent; Uno, Kevin T; Bibi, Faysal; Pante, Michael C; Njau, Jackson; de la Torre, Ignacio

2017-09-01

The Oldowan site HWK EE (Olduvai Gorge, Tanzania) has yielded a large fossil and stone tool assemblage at the transition from Lower to Middle Bed II, ∼1.7 Ma. Integrated tooth wear and stable isotope analyses were performed on the three most abundant ungulate taxa from HWK EE, namely Alcelaphini, cf. Antidorcas recki (Antilopini) and Equus oldowayensis (Equini), to infer dietary traits in each taxon. Some paleodietary changes were observed for cf. A. recki and E. oldowayensis based on tooth wear at the transition from the Lemuta to the Lower Augitic Sandstone (LAS) interval within the HWK EE sequence. Stable carbon and oxygen isotope data show no significant changes in bulk diet or hydroclimate between the Lemuta and LAS intervals. The combined tooth wear and stable isotope data suggest similar paleoecological conditions across the two HWK EE intervals, but that differences in vegetation consumed among ungulates may have resulted in changes in dietary niches. Integrating tooth wear and stable isotope analyses permits the characterization of ungulate diets and habitats at HWK EE where C 4 dominated and minor mixed C 3 and C 4 habitats were present. Our results provide a better understanding of the paleoenvironmental conditions of the Lemuta and LAS intervals. The LAS assemblage was mostly accumulated during relatively dry periods at Olduvai Gorge when grasses were not as readily available and grazing animals may have been more nutritionally-stressed than during the formation of the Lemuta assemblage. This helps to contextualize variations in hominin and carnivore feeding behavior observed from the faunal assemblages produced during the two main occupations of the site. Copyright © 2017 Elsevier Ltd. All rights reserved.

Spatio-temporal structure and influence of environmental parameters on the Tipuloidea (Insecta: Diptera) assemblage of Neotropical salt marshes

NASA Astrophysics Data System (ADS)

Rodrigues, Lucas; Carrasco, Daiane; Proietti, Maíra

2017-10-01

Estuaries and salt marshes are important coastal ecosystems that present unique characteristics in terms of nutrient cycling, salinity, habitats, flora and fauna. Despite their ecological importance, there is scarce knowledge on the occupation, distribution and ecology of insects, including Tipuloidea, in these environments. This study aimed to evaluate the composition, seasonality and effect of abiotic factors on the abundance, diversity and structure of a Tipuloidea assemblage at the Patos Lagoon salt marshes, located at the south of the Neotropical region. We sampled crane-flies from three zones along the estuary by installing two Malaise traps at the low and high vegetation strata of each zone. Sampling was conducted uninterruptedly every fifteen days between August/2015 and July/2016, and collected insects were identified morphologically based on specific literature. 5248 crane-flies were identified covering six species and twenty-five morphospecies. Abundance and frenquency of occurrence of species revealed a gap in the presence of constant species at the middle estuary. Dicranomyia, Gonomyia, Teucholabis and Zelandotipula species were additional (accessory) species only in the upper estuary, while Symplecta cana only in the lower estuary. This shows that different species prefer distinct points along the estuary. Higher abundance of crane-flies was correlated with elevated temperature and humidity. Symplecta pilipes was an exception, presenting increase in abundance under lower temperatures. Seasonal change in Tipuloidea species composition was observed, with higher evenness of Dicranomyia, Geranomyia, Rhipidia domestica and Symplecta cana (15-20%) during summer, and dominance of Symplecta pilipes in winter (80%). The gap at the middle estuary can possibly be due to stress caused by large fluctuations in salinity in the zone. In addition, the seasonal differences can have significant ecological consequences such as the modification of the Tipuloid species that compose the detritivorous and/or succivorous trophic guild, and consequently influence the upper trophic levels of the salt marsh environment.

The Conservation Value of Traditional Rural Landscapes: The Case of Woodpeckers in Transylvania, Romania.

PubMed

Dorresteijn, Ine; Hartel, Tibor; Hanspach, Jan; von Wehrden, Henrik; Fischer, Joern

2013-01-01

Land use change is a major threat to global biodiversity. Forest species face the dual threats of deforestation and intensification of forest management. In regions where forests are under threat, rural landscapes that retain structural components of mature forests potentially provide valuable additional habitat for some forest species. Here, we illustrate the habitat value of traditional wood pastures for a woodpecker assemblage of six species in southern Transylvania, Romania. Wood pastures are created by long-term stable silvo-pastoral management practices, and are composed of open grassland with scattered large, old trees. Because of their demanding habitat requirements, woodpeckers share habitat with many other bird species, and have been considered as possible indicator species for bird species diversity. We first compared woodpecker assemblages between forests and wood pastures. Second, we grouped features of wood pastures into three spatial contexts and addressed how these features related to the occurrence of three woodpecker species that are formally protected. Woodpecker species composition, but not the number of species, differed between forests and wood pastures, with the green woodpecker occurring more commonly in wood pastures, and the lesser spotted woodpecker more commonly in forests. Within wood pastures, the intermediate context (especially surrounding forest cover) best explained the presence of the grey-headed and middle spotted woodpecker. By contrast, variables describing local vegetation structure and characteristics of the surrounding landscape did not affect woodpecker occurrence in wood pastures. In contrast to many other parts of Europe, in which several species of woodpeckers have declined, the traditional rural landscape of Transylvania continues to provide habitat for several woodpecker species, both in forests and wood pastures. Given the apparent habitat value of wood pastures for woodpeckers we recommend wood pastures be explicitly considered in relevant policies of the European Union, namely the Habitats Directive and the EU Common Agricultural Policy.

Characteristics of modern pollen rain and the relationship to vegetation in sagebrush-steppe environments of Montana, USA

NASA Astrophysics Data System (ADS)

Briles, C.; Bryant, V.

2010-12-01

Variations in pollen production and dispersal characteristics among plant species complicate our ability to determine direct relationships between deposited pollen and actual vegetation. In order to better understand modern pollen-vegetation relationships, we analyzed pollen from 61 samples taken from sagebrush-steppe environments across Montana and compared them with the actual vegetation composition at each site. We also determined to what degree sagebrush-steppe communities can be geographically distinguished from one another based on their pollen signature. Pollen preservation was good, especially in wetter environments, with pollen degradataion ranging from 4-15%. Diploxylon Pinus was the primary contributor to the pollen rain, even in plots where pine trees did not occur or were several kilometers from the plot. Artemisia and grass pollen are underrepresented in the soils samples, while Chenopodiaceae and Juniperus pollen are overrepresented when compared to actual vegetation composition. Insect-pollinated species are present only in very minor amounts in the soil samples, even though some (e.g., Brassica) are abundant in the plots. In general, pollen spectra show significant differences between regions, however, within each region the individual spectra are not statistically significant from one another. An understanding of modern pollen-vegetation relationships and the palynological “fingerprint” of sagebrush-steppe communities aid in climatic and ecological interpretations of fossil pollen assemblages. The data also provide important control samples for forensics studies that use pollen to geolocate an object or person to a crime scene.