An Effective Method for Detecting Potential Woodland Vernal Pools Using High-Resolution LiDAR Data and Aerial Imagery

EPA Science Inventory

Effective conservation of woodland vernal pools – important components of regional amphibian diversity and ecosystem services – depends on locating and mapping these pools accurately. Current methods for identifying potential vernal pools are primarily based on visual interpretat...

Major QTLs for critical photoperiod and vernalization underlie extensive variation in flowering in the Mimulus guttatus species complex.

PubMed

Friedman, Jannice; Willis, John H

2013-07-01

Species with extensive ranges experience highly variable environments with respect to temperature, light and soil moisture. Synchronizing the transition from vegetative to floral growth is important to employ favorable conditions for reproduction. Optimal timing of this transition might be different for semelparous annual plants and iteroparous perennial plants. We studied variation in the critical photoperiod necessary for floral induction and the requirement for a period of cold-chilling (vernalization) in 46 populations of annuals and perennials in the Mimulus guttatus species complex. We then examined critical photoperiod and vernalization QTLs in growth chambers using F(2) progeny from annual and perennial parents that differed in their requirements for flowering. We identify extensive variation in critical photoperiod, with most annual populations requiring substantially shorter day lengths to initiate flowering than perennial populations. We discover a novel type of vernalization requirement in perennial populations that is contingent on plants experiencing short days first. QTL analyses identify two large-effect QTLs which influence critical photoperiod. In two separate vernalization experiments we discover each set of crosses contain different large-effect QTLs for vernalization. Mimulus guttatus harbors extensive variation in critical photoperiod and vernalization that may be a consequence of local adaptation. © 2013 The Authors. New Phytologist © 2013 New Phytologist Trust.

Methods for estimating the amount of vernal pool habitat in the northeastern United States

USGS Publications Warehouse

Van Meter, R.; Bailey, L.L.; Grant, E.H.C.

2008-01-01

The loss of small, seasonal wetlands is a major concern for a variety of state, local, and federal organizations in the northeastern U.S. Identifying and estimating the number of vernal pools within a given region is critical to developing long-term conservation and management strategies for these unique habitats and their faunal communities. We use three probabilistic sampling methods (simple random sampling, adaptive cluster sampling, and the dual frame method) to estimate the number of vernal pools on protected, forested lands. Overall, these methods yielded similar values of vernal pool abundance for each study area, and suggest that photographic interpretation alone may grossly underestimate the number of vernal pools in forested habitats. We compare the relative efficiency of each method and discuss ways of improving precision. Acknowledging that the objectives of a study or monitoring program ultimately determine which sampling designs are most appropriate, we recommend that some type of probabilistic sampling method be applied. We view the dual-frame method as an especially useful way of combining incomplete remote sensing methods, such as aerial photograph interpretation, with a probabilistic sample of the entire area of interest to provide more robust estimates of the number of vernal pools and a more representative sample of existing vernal pool habitats.

Weather-related effects on woodland vernal pool hydrology and hydroperiod

Treesearch

Robert T. Brooks

2004-01-01

Woodland vernal pools occur commonly throughout northeastern North America. These pools provide preferred breeding habitat for mole salamanders (Ambystoma spp.) and wood frogs (Rana sylvatica) and support an abundant and diverse macroinvertebrate fauna. Vernal pool hydrology, and especially hydro-period or duration of the wet phase, affects the composition and...

Heading date QTL in winter wheat (Triticum aestivum L.) coincide with major developmental genes Vernalization-1 and Photoperiod-1

USDA-ARS?s Scientific Manuscript database

In wheat (Triticum aestivum L.), time from planting to spike emergence is influenced by genes controlling vernalization requirement and photoperiod response. Characterizing the available genetic diversity of known and novel alleles of Vernalization-1 (Vrn-1) and Photoperiod-1 (Ppd-1) in winter wheat...

Clinico-immunological aspects of vernal catarrh in hilly terrains of Himachal Pradesh.

PubMed

Bisht, R; Goyal, A; Thakur; Singh, T; Sharma; Vijay; Goyal, B K

1992-01-01

Very few immunological studies in vernal catarrh have been conducted in India and abroad, but none in Himachal Pradesh in spite of its high incidence in the State. In the present study 25 patients of vernal catarrh residing at a height ranging between 1000 to 2500 meters above mean sea level have been evaluated. Their immunological status of serum and tears after detailed clinical assessment was studied by single radial immunodiffusion technique of Mancini et al. The values of serum IgA and IgM were significantly higher in patients than in controls. The serum IgE level had no significant difference. The IgG was significantly lower in patients with vernal catarrh. The values of tear IgM, IgE and IgA in these patients were significantly higher than in controls. However, in no case or control group C3C and C4 were detected in tears. The limbal type of vernal catarrh was found to be the most common in this part of the country. No mixed case was seen. Derangement of the immune system in the pathogenesis of vernal catarrh is suggested.

A methyltransferase required for proper timing of the vernalization response in Arabidopsis

DOE PAGES

Lee, Joohyun; Yun, Jae-Young; Zhao, Wei; ...

2015-01-20

Prolonged exposure to winter cold enables flowering in many plant species through a process called vernalization. In Arabidopsis, vernalization results from the epigenetic silencing of the floral repressor FLOWERING LOCUS C (FLC) via a Polycomb Repressive Complex 2 (PRC2)-mediated increase in the density of the epigenetic silencing mark H3K27me3 at FLC chromatin. During cold exposure, a gene encoding a unique, cold-specific PRC2 component, VERNALIZATION INSENSITIVE 3 (VIN3), which is necessary for PRC2-mediated silencing of FLC, is induced. In this paper, we show that SET DOMAIN GROUP 7 (SDG7) is required for proper timing of VIN3 induction and of the vernalizationmore » process. Loss of SDG7 results in a vernalization-hypersensitive phenotype, as well as more rapid cold-mediated up-regulation of VIN3. In the absence of cold, loss of SDG7 results in elevated levels of long noncoding RNAs, which are thought to participate in epigenetic repression of FLC. Furthermore, loss of SDG7 results in increased H3K27me3 deposition on FLC chromatin in the absence of cold exposure and enhanced H3K27me3 spreading during cold treatment. In conclusion, SDG7 is a negative regulator of vernalization, and loss of SDG7 creates a partially vernalized state without cold exposure.« less

Depth-area-volume and hydroperiod relationships of ephemeral (vernal) forest pools in southern New England

Treesearch

Robert T. Brooks; Masaki Hayashi

2002-01-01

Ephemeral or "vernal" pools occur commonly throughout the forests of the northeastern United States and adjacent eastern Canada. These pools are critical breeding habitat for a number of amphibian species and support a diverse invertebrate community. The hydroperiod or duration of surface water of vernal pools affects faunal composition and reproduction. We...

Responses of alloplasmic (cytoplasm=Triticum timopheevii) and euplasmic wheats (Triticum aestivum) to photoperiod and vernalization.

PubMed

Ward, R W; Heyne, E G; Paulsen, G M

1983-07-01

Studies were conducted to determine the influence of the male sterility-inducing cytoplasm of Triticum timopheevii (Zhuk.) Zhuk. on response of several common winter wheat (T. aestivum L.) nuclear genotypes to photoperiod and vernalization. Comparative studies of cytoplasmic substitution lines provide information on the role of the cytoplasmic genetic mechanism in growth and development. In the case of cytoplasmic male sterility-based hybrid production systems, ubiquity of sterility-inducing cytoplasm in derived hybrids warrants thorough characterization of its influence on plant phenotype. Factorial combinations of cytoplasm (T. timopheevii and T. aestivum), nuclear genotype, and photoperiod or vernalization treatments were evaluated under hydroponic conditions in controlled environment chambers. Interaction of cytoplasm, photoperiod, and nuclear genotype was significant in one or more experiments for days to anthesis and potential spikelet number, and interaction of cytoplasm, vernalization, and nuclear genotype was significant for days to spike emergence. Long day length was associated with increased percentage seed set in one study, but interactions of photoperiod and cytoplasm were not detected for percentage seed set. Interactions involving cytoplasm and photoperiod or vernalization were interpreted as evidence of the existence of genetic factors in cytoplsam of T. timopheevii which alter photoperiod or vernalization responses of alloplasmic plants relative to responses exhibited by euplasmic plants. Since photoperiod and vernalization responses are critical to adaptation, T. timopheevii cytoplasm can alter adaptability of T. aestivum. The specific effect would be nuclear genotype dependent, and does not appear to be of a magnitude greater than that induced by nuclear genetic variability at loci conditioning photoperiod or vernalization responses or other adaptation-determining characteristics. Normal multilocation/year testing of alloplasmic hybrids should therefore adequately identify zones of adaptation.

Shrew species richness and abundance in relation to vernal pond habitat in southern New England

Treesearch

Robert T. Brooks; Katherine L. Doyle

2001-01-01

Vernal ponds are important aquatic habitat for many species of amphibians and invertebrates. While many aspects of such ponds have been investigated, small mammal populations in the adjacent upland [catchment] habitat are largely unstudied. We selected three ponds in central Massachusetts to determine whether the presence of vernal ponds in forested habitat influences...

Certified: A Citizen's Step-by-Step Guide to Protecting Vernal Pools. 6th Edition.

ERIC Educational Resources Information Center

Colburn, Elizabeth A., Ed.

The objective of this manual is to train volunteers in the process of identifying vernal pool habitat so that as many of these pools as possible can be certified by the Massachusetts Natural Heritage and Endangered Species Program. Vernal pools are a kind of temporary pond in which salamanders and other animals breed. The pools are unique…

77 FR 43350 - Draft Environmental Assessment and Proposed Habitat Conservation Plan for the San Diego Unified...

Federal Register 2010, 2011, 2012, 2013, 2014

2012-07-24

...) restoration and enhancement of vernal pools occupied by San Diego fairy shrimp on the McAuliffe Park and... would permanently remove all San Diego fairy shrimp and its vernal pool habitat from the project site. To mitigate impacts to the San Diego fairy shrimp and its vernal pool habitat, the applicant would...

Bee diversity associated with Limnanthes floral patches in California vernal pool habitats

Treesearch

Joan M. Leong; Robbin W. Thorp

2005-01-01

As with other kinds of wetland habitats in California, approximately 90 percent of vernal pool habitat (estimated) has been lost in California. In southern California, losses are estimated to be even greater. The flora of these endangered habitats is reasonably well known, especially the spring flowering annuals that are found in or at the margins of vernal pools (for...

Component-resolved diagnostics in vernal conjunctivitis.

PubMed

Armentia, Alicia; Sanchís, Eugenia; Montero, Javier A

2016-10-01

Conventional diagnostic tests in allergy are insufficient to clarify the cause of vernal conjunctivitis. Component-resolved diagnostic (CRD) by microarray allergen assay may be useful in detecting allergens that might be involved in the inflammatory process. In a recent trial in patients suffered from eosinophilic esophagitis, after 2 years of the CRD-guided exclusion diet and specific immunotherapy, significant clinical improvement was observed, and 68% of patients were discharged (cure based on negative biopsy, no symptoms, and no medication intake). Our new objective was to evaluate IgE-mediated hypersensitivity by CRD in tears and serum from patients with vernal conjunctivitis and treat patients with identified triggering allergens by specific immunotherapy. Twenty-five patients with vernal conjunctivitis were evaluated. The identified triggering allergens were n Lol p 1 (11 cases), n Cyn d 1 (eight cases), group 4 and 6 grasses (six cases) and group 5 of grasses (five cases). Prick test and pollen IgE were positive in one case. Clinical improvement was observed in 13/25 vernal conjunctivitis patients after 1-year specific immunotherapy. CRD seems to be a more sensitive diagnostic tool compared with prick test and IgE detection. Specific CRD-led immunotherapy may achieve clinical improvements in vernal conjunctivitis patients.

Vernal conjunctivitis

MedlinePlus

Vernal conjunctivitis often occurs in people with a strong family history of allergies. These may include allergic rhinitis , asthma , and eczema. It is most common in young males, and most often occurs during the spring and ...

Patterns of testosterone in three Nearctic-Neotropical migratory songbirds during spring passage.

PubMed

Covino, Kristen M; Morris, Sara R; Moore, Frank R

2015-12-01

Preparation for breeding may overlap extensively with vernal migration in long-distance migratory songbirds. Testosterone plays a central role in mediating this transition into breeding condition by facilitating changes to physiology and behavior. While changes in testosterone levels are well studied in captive migrants, these changes are less well known in free-living birds. We examined testosterone levels in free-living Nearctic-Neotropical migrants of three species during their vernal migration. Testosterone levels increased during the migratory period in males of all three species but significantly so in only two. Testosterone levels in females remained the same throughout their migration. Our results support the extensive overlap between vernal migration and breeding preparation in male songbirds. The pattern of testosterone changes during vernal migration is far from clear in females. Copyright © 2015 Elsevier Inc. All rights reserved.

The Maine Vernal Pool Mapping and Assessment Program: Engaging Municipal Officials and Private Landowners in Community-Based Citizen Science

NASA Astrophysics Data System (ADS)

Jansujwicz, Jessica S.; Calhoun, Aram J. K.; Lilieholm, Robert J.

2013-12-01

The Vernal Pool Mapping and Assessment Program (VPMAP) was initiated in 2007 to create a vernal pool database as a planning tool to foster local compliance with new state vernal pool regulations. In the northeastern United States, vernal pools are seasonal wetlands that provide critical breeding habitat for a number of amphibians and invertebrates and provide important resting and foraging habitat for some rare and endangered state-listed species. Using participant observation, interviews, and focus groups, we examined the engagement of municipal officials and private landowners in VPMAP. Important outcomes of municipal and landowner engagement included mobilization of town support for proactive planning, improved awareness and understanding of vernal pools, and increased interactions between program coordinators, municipal officials, and private landowners. Challenges to municipal and landowner engagement included an inconsistency in expectations between coordinators and municipal officials and a lack of time and sufficient information for follow-up with landowners participating in VPMAP. Our study highlights the importance of developing relationships among coordinators, municipal officials, and private landowners in facilitating positive outcomes for all stakeholders and for effective resource management. We suggest an expanded citizen science model that focuses on improving two-way communication among project coordinators, municipal officials, and local citizens and places communication with private landowners on par with volunteer citizen scientist recruitment and field training. Lessons learned from this research can inform the design and implementation of citizen science projects on private land.

O-GlcNAc-mediated interaction between VER2 and TaGRP2 elicits TaVRN1 mRNA accumulation during vernalization in winter wheat

PubMed Central

Xiao, Jun; Xu, Shujuan; Li, Chunhua; Xu, Yunyuan; Xing, Lijing; Niu, Yuda; Huan, Qing; Tang, Yimiao; Zhao, Changping; Wagner, Doris; Gao, Caixia; Chong, Kang

2014-01-01

Vernalization, sensing of prolonged cold, is important for seasonal flowering in eudicots and monocots. While vernalization silences a repressor (FLC, MADS-box transcription factor) in eudicots, it induces an activator (TaVRN1, an AP1 clade MADS-box transcription factor) in monocots. The mechanism for TaVRN1 induction during vernalization is not well understood. Here we reveal a novel mechanism for controlling TaVRN1 mRNA accumulation in response to prolonged cold sensing in wheat. The carbohydrate-binding protein VER2, a jacalin lectin, promotes TaVRN1 upregulation by physically interacting with the RNA-binding protein TaGRP2. TaGRP2 binds to TaVRN1 pre-mRNA and inhibits TaVRN1 mRNA accumulation. The physical interaction between VER2 and TaGRP2 is controlled by TaGRP2 O-GlcNAc modification, which gradually increases during vernalization. The interaction between VER2 and O-GlcNAc-TaGRP2 reduces TaGRP2 protein accumulation in the nucleus and/or promotes TaGRP2 dissociation from TaVRN1, leading to TaVRN1 mRNA accumulation. Our data reveal a new mechanism for sensing prolonged cold in temperate cereals. PMID:25091017

A longer vernal window: the role of winter coldness and snowpack in driving spring transitions and lags.

PubMed

Contosta, Alexandra R; Adolph, Alden; Burchsted, Denise; Burakowski, Elizabeth; Green, Mark; Guerra, David; Albert, Mary; Dibb, Jack; Martin, Mary; McDowell, William H; Routhier, Michael; Wake, Cameron; Whitaker, Rachel; Wollheim, Wilfred

2017-04-01

Climate change is altering the timing and duration of the vernal window, a period that marks the end of winter and the start of the growing season when rapid transitions in ecosystem energy, water, nutrient, and carbon dynamics take place. Research on this period typically captures only a portion of the ecosystem in transition and focuses largely on the dates by which the system wakes up. Previous work has not addressed lags between transitions that represent delays in energy, water, nutrient, and carbon flows. The objectives of this study were to establish the sequence of physical and biogeochemical transitions and lags during the vernal window period and to understand how climate change may alter them. We synthesized observations from a statewide sensor network in New Hampshire, USA, that concurrently monitored climate, snow, soils, and streams over a three-year period and supplemented these observations with climate reanalysis data, snow data assimilation model output, and satellite spectral data. We found that some of the transitions that occurred within the vernal window were sequential, with air temperatures warming prior to snow melt, which preceded forest canopy closure. Other transitions were simultaneous with one another and had zero-length lags, such as snowpack disappearance, rapid soil warming, and peak stream discharge. We modeled lags as a function of both winter coldness and snow depth, both of which are expected to decline with climate change. Warmer winters with less snow resulted in longer lags and a more protracted vernal window. This lengthening of individual lags and of the entire vernal window carries important consequences for the thermodynamics and biogeochemistry of ecosystems, both during the winter-to-spring transition and throughout the rest of the year. © 2016 The Authors Global Change Biology Published by John Wiley & Sons Ltd.

Monitoring Physicochemical and Nutrient Dynamics Along a Development Gradient in Maine Ephemeral Wetlands

NASA Astrophysics Data System (ADS)

Podzikowski, L. Y.; Capps, K. A.; Calhoun, A.

2014-12-01

Vernal pools are ephemeral wetlands in forested landscapes that fill with snowmelt, precipitation, and/or groundwater in the spring, and characteristically dry down through the summer months. Typically, vernal pool research has focused on the population and community ecology of pool-breeding organisms (amphibians and macroinvertebrates) conducted during their relatively short breeding season. Yet, little is known about the temporal variability of biogeochemical processes within and among vernal pools in urbanizing landscapes. In this study, we monitored physicochemical characteristics and nutrient dynamics in 22 vernal pools in central Maine post thaw in 2014. Four pristine pools were sampled weekly in five locations within the pool for ambient nutrient concentrations (SRP, NH4, NOx) and at three locations for physicochemical characteristics (DO, pH, temperature, conductivity). In the remaining 18 pools, we sampled one location for nutrients and three locations for physicochemical characteristics at least monthly to estimate the influence of increasing urbanization on the physical and chemical environment. Our data suggest most pools found in urbanizing areas have higher conductivity (developed sites ranging 18.52 - 1238 μS cm-1 compared to pristine between 14.08 - 58.4 μS cm-1). Previous work suggests forested pools exhibit dystrophic conditions with high coloration from DOC limiting primary production due to increased light attenuation in pools. However, both pristine and urban pools experienced spikes in DO (>100% saturation) throughout the day, suggesting that high productivity is not a reliable indicator of the effects of urbanization on vernal pools. We argue that continued monitoring of vernal pools along a gradient of urbanization could give insight into the role of ephemeral wetlands as potential biogeochemical hotspots and may also indicate how human development may alter biogeochemical cycling in ephemeral wetlands.

HYDROLOGY AND LANDSCAPE CONNECTIVITY OF VERNAL POOLS

EPA Science Inventory

Vernal pools are shaped by hydrologic processes which influence many aspects of pool function. The hydrologic budget of a pool can be summarized by a water balance equation that relates changes in the amount of water in the pool to precipitation, ground- and surface-water flows, ...

Assessing the Occurrence, Persistence, and Fate of Natural and Synthetic Steroid Estrogens in Vernal Pools

NASA Astrophysics Data System (ADS)

Mina, O.

2015-12-01

The presence of natural and synthetic estrogens in treated wastewater used for irrigation of agricultural fields poses a potential risk to surface water ecosystems. While a large number of recent studies have investigated the occurrence, fate, and transport of estrogens in the environment, the vast majority of these studies have focused on the fate of estrogens in streams and rivers. However, no studies have been conducted assessing the occurrence, persistence, and fate of estrogens in impacted sensitive aquatic ecosystems such as vernal pools. This is of particular importance because vernal pools serve as critical breeding habitat for amphibians, which are known to be sensitive to the presence of endocrine disrupting compounds. A spray irrigation system was implemented over 50 years ago at Penn State's "Living Filter" as an alternative to discharging treated wastewater to a high quality trout stream. This system introduces all of Penn State's treated wastewater onto approximately 250 ha of agricultural and forested land at a rate of ~5 cm/ha/week. More than a dozen vernal pools are impacted by this wastewater irrigation, with some ponds adjacent to irrigation laterals receiving direct inputs of the treated wastewater. The goal of this study was to assess the impact of these weekly irrigation activities on the occurrence, persistence, and fate of estrogens (17α- and 17β-estradiol, estrone, estriol, and ethinylestradiol) in 3 vernal pools during an 8-week field study. The spring 2015 study period coincided with wood frog breeding and metamorphosis. Irrigation wastewater was collected weekly and water samples near the sediment-water interface in each vernal pool were collected daily. Real-time monitoring stations continuously recorded the temperature, pH, redox potential, DO, EC, and water level at each pool. Nearly 100% of the daily samples (n>130) collected contained estrogens, and the concentrations were several times higher compared to the wastewater. Additionally, the data suggest transformation of estrone back to 17α- and 17β-estradiol potentially due to anaerobic conditions in the vernal pools. This unique field study suggests that more research is needed to quantify the potential impact of estrogenic activity on amphibians, particularly during the critical metamorphosis period.

Comprehensive transcriptome analysis reveals distinct regulatory programs during vernalization and floral bud development of orchardgrass (Dactylis glomerata L.).

PubMed

Feng, Guangyan; Huang, Linkai; Li, Ji; Wang, Jianping; Xu, Lei; Pan, Ling; Zhao, Xinxin; Wang, Xia; Huang, Ting; Zhang, Xinquan

2017-11-22

Vernalization and the transition from vegetative to reproductive growth involve multiple pathways, vital for controlling floral organ formation and flowering time. However, little transcription information is available about the mechanisms behind environmental adaption and growth regulation. Here, we used high-throughput sequencing to analyze the comprehensive transcriptome of Dactylis glomerata L. during six different growth periods. During vernalization, 4689 differentially expressed genes (DEGs) significantly increased in abundance, while 3841 decreased. Furthermore, 12,967 DEGs were identified during booting stage and flowering stage, including 7750 up-regulated and 5219 down-regulated DEGs. Pathway analysis indicated that transcripts related to circadian rhythm, photoperiod, photosynthesis, flavonoid biosynthesis, starch, and sucrose metabolism changed significantly at different stages. Coexpression and weighted correlation network analysis (WGCNA) analysis linked different stages to transcriptional changes and provided evidence of inner relation modules associated with signal transduction, stress responses, cell division, and hormonal transport. We found enrichment in transcription factors (TFs) related to WRKY, NAC, AP2/EREBP, AUX/IAA, MADS-BOX, ABI3/VP1, bHLH, and the CCAAT family during vernalization and floral bud development. TFs expression patterns revealed intricate temporal variations, suggesting relatively separate regulatory programs of TF modules. Further study will unlock insights into the ability of the circadian rhythm and photoperiod to regulate vernalization and flowering time in perennial grass.

Acute Sensitivity of the Vernal Pool Fairy Shrimp, Branchinecta Lynchi (Anostraca; Branchinectidae), and Surrogate Species to 10 Chemicals

EPA Science Inventory

Vernal pool fairy shrimp, Branchinecta lynchi, (Branchiopoda; Anostraca) and other fairy shrimp species have been listed as threatened or endangered under the US Endangered Species Act. Because few data exist about the sensitivity of Branchinecta spp. to toxic effects of contamin...

The Creatures beneath Our Feet: Amphibian Monitors Take to the Road.

ERIC Educational Resources Information Center

Daigle, Cheryl Perusse

1999-01-01

The Nature Conservancy's Berkshire Program involves community volunteers in monitoring migration routes of amphibians that rely on vernal pools for breeding success. Vernal-pool workshops provide basic knowledge of amphibian lifecycles and detailed monitoring instructions. Nighttime field trips for adults and children and monitoring experiences…

Grazing impacts on infiltration rates at Vernal Pools in the Modoc Plateau

USDA-ARS?s Scientific Manuscript database

Vernal pools are depressions of land that are seasonally inundated with water. They host rare and endemic plant and animal species and are sensitive to livestock grazing management and climate change impacts on hydrology and vegetation. Climate change forecasts predicting a hotter, drier climate sug...

78 FR 17709 - Endangered and Threatened Wildlife and Plants; Recovery Plan for Rogue and Illinois Valley Vernal...

Federal Register 2010, 2011, 2012, 2013, 2014

2013-03-22

...-FF01E00000] Endangered and Threatened Wildlife and Plants; Recovery Plan for Rogue and Illinois Valley Vernal... addresses two endangered plant species that are endemic to southern Oregon, and also includes some... Federal List of Endangered and Threatened Wildlife and Plants. ADDRESSES: An electronic copy of the...

Expert Perceptions of Approaches to Protecting Isolated Wetlands in the Northeastern United States

Treesearch

Kristin Floress; Mary Beth Kolozsvary; Jean Mangun

2017-01-01

In this article, we describe how protecting vernal pools was discussed by experts in the northeastern United States (U.S) within the context of a theoretical policy framework. We offer insight about characteristics of feasible vernal pool policy solutions, and identify gaps in our understanding, particularly regarding conditions in states currently lacking specific...

Glyma11g13220, a homolog of the vernalization pathway gene VERNALIZATION 1 from soybean [Glycine max (L.) Merr.], promotes flowering in Arabidopsis thaliana.

PubMed

Lü, Jing; Suo, Haicui; Yi, Rong; Ma, Qibin; Nian, Hai

2015-09-29

The precise timing of flowering is fundamental to successful reproduction, and has dramatic significance for crop yields. Although prolonged low temperatures are not required for flowering induction in soybean, vernalization pathway genes have been retained during the evolution of this species. Little information is currently available in regarding these genes in soybean. We were able to detect the expression of Glyma11g13220 in different organs at all monitored developmental stages in soybean. Glyma11g13220 expression was higher in leaves and pods than in shoot apexes and stems. In addition, Glyma11g13220 was responsive to photoperiod and low temperature in soybean. Furthermore, Glyma11g13220 was found to be a nuclear-localized protein. Over-expression of Glyma11g13220 in an Arabidopsis Columbia-0 (Col-0) background resulted in early flowering. Quantitative real-time PCR analysis revealed that transcript levels of flower repressor FLOWERING LOCUS C (FLC), and FD decreased significantly in transgenic Arabidopsis compared with wild-type Col-0, while the expression of VERNALIZATION INSENSITIVE 3 (VIN3) and FLOWERING LOCUS T (FT) noticeably increased. Our results suggest that Glyma11g13220, a homolog of Arabidopsis VRN1, is a functional protein. Glyma11g13220, which is responsive to photoperiod and low temperature in soybean, may participate in the vernalization pathway in Arabidopsis and help regulate flowering time. Arabidopsis VRN1 and Glyma11g13220 exhibit conserved as well as diverged functions.

[Effects of temperature on leaf lettuce vernalization.

PubMed

Zhang, Li Li; Hao, Jing Hong; Han, Ying Yan; Liu, Chao Jie; Su, He Nan; Li, Pan Pan; Sun, Yan Chuan; Fan, Shuang Xi

2016-11-18

To investigate the effects of different temperatures on the vernalization of leaf lettuce, and declare their type, two easy bolting leaf lettuce varieties of GB-30 and GB-31 were selected as material, which were treated by 4 ℃, 20 ℃ and 25 ℃ for 20 d respectively and afterwards treated by high temperature stress. The process of flower bud differentiation was observed by using paraffin section technology, and combined the condition of bolting and flowering to estimate whether or not it underwent vernalization, and defined its vernalization type. The results showed that, two varieties of GB-30 and GB-31 appeared bolting to different degrees at the 8 th day under high temperature stress after temperature treatments in the early stage. Different temperatures in the early stage all made flower bud differentiated of two varieties. 4 ℃ treatment did not advance the flower bud differentiation, while the high temperature in later time accelerated this progress. Furthermore, the days required for the two varieties to complete development stages differed under different temperature treatments. The effective accumulated temperature whether from pregermination to flowering or from high temperature stress to flowering of two varieties were also different. The leaf lettuce without low temperature treatment in early stage could enter into the flower bud differentiation, bolting, budding and flowering stages, and it could be considered as non-low temperature vernalization plant. The high temperature treatment in later stage could obviously promote its bolting and flowering. In addition, the effective accumulated temperature had to reach about 2500 ℃·d from germination to blossom.

Habitat use and life history of the vernal crayfish, Procambarus viaeviridis (Faxon, 1914), a secondary burrowing crayfish in Mississippi, USA

Treesearch

Zanethia C. Barnett; Susan B. Adams; Rebecca L.   Rosamond

2017-01-01

The Lower Mississippi Alluvial Valley (LMAV) is a species-rich region in North America, but its crayfish community has not been extensively sampled. We investigated the annual life cycle, habitat use, and some morphological characteristics of the vernal crayfish, Procambarus viaeviridis (Faxon, 1914), in the Dahomey National Wildlife Refuge,...

Vernal freeze damage and genetic variation alter tree growth, chemistry, and insect interactions.

PubMed

Rubert-Nason, Kennedy F; Couture, John J; Gryzmala, Elizabeth A; Townsend, Philip A; Lindroth, Richard L

2017-11-01

Anticipated consequences of climate change in temperate regions include early spring warmup punctuated by intermittent hard freezes. Warm weather accelerates leaf flush in perennial woody species, potentially exposing vulnerable young tissues to damaging frosts. We employed a 2 × 6 randomized factorial design to examine how the interplay of vernal (springtime) freeze damage and genetic variation in a hardwood species (Populus tremuloides) influences tree growth, phytochemistry, and interactions with an insect herbivore (Chaitophorus stevensis). Acute effects of freezing included defoliation and mortality. Surviving trees exhibited reduced growth and altered biomass distribution. Reflushed leaves on these trees had lower mass per area, lower lignin concentrations, and higher nitrogen concentrations, altered chemical defence profiles, and supported faster aphid population growth. Many effects varied among plant genotypes and were related with herbivore performance. This study suggests that a single damaging vernal freeze event can alter tree-insect interactions through effects on plant growth and chemistry. Differential responses of various genotypes to freeze damage suggest that more frequent vernal freeze events could also influence natural selection, favouring trees with greater freeze hardiness, and more resistance or tolerance to herbivores following damage. © 2017 John Wiley & Sons Ltd.

Spatial and temporal variation in ephemeral pool crustacean communities

Treesearch

Janette Holtz; Marie A. Simovich; Thomas Philippi

2005-01-01

Vernal pool habitat losses in San Diego County, California, are estimated at 95 percent and will increase as development continues. The majority of San Diego’s remaining pools are located at the Marine Corps Air Station, Miramar. Crustacean communities in eight vernal pools in San Diego County were sampled over 3 years that differed in rainfall amount and pattern. In...

Vernal Point and Plate Tectonics: Indo-Australian

NASA Astrophysics Data System (ADS)

Chavez C, Teodosio; Chavez-Sumarriva, Israel; Chavez S, Nadia

2013-04-01

A precession coordinate system (eccentricity -100Ka, obliquity -40Ka and precession -25Ka) developed by Milankovicht was the precession of the equinoxes, where the vernal point retrograde 1° every 72 years approximately and enter (0°) into the Aquarius constellation on March 20, 1940. On earth this entry was verify through: a) stability of the magnetic equator in the south central zone of Peru and in the north zone of Bolivia, b) the greater intensity of equatorial electrojet (EEJ) in Peru and Bolivia since 1940. The vernal point is a maximum conductivity sensitive axis in the EEJ given at the equinoxes. There was a relationship between the equatorial electrojet - magnetic equator - crust, and besides there was a long history of studies of coupling between earthquake-ionosphere that can be founded in the following revisions: Liperovsky et al. (1990); Gaivoronskaya (1991); Liperovsky et al. (1992); Parrot et al. (1993); Pulinets et al. (1994) and Gokhberg et al. (1995). In IUGG (2007), Cusco was propose as a prime meridian (72° W == 0°) that was parallel to the Andes; the objective was to synchronize the earth sciences phenomena (e.g. geology, geophysics, etc.). The coordinate system had the vernal point from meridian (72° W == 0°) and March 20, 1940. The retrograde movement of the vernal point was the first precessional degree (2012 = 1940 + 72); from the new prime meridian (72° W == 0°) it has obtained the opposite meridian (72° E == 180°). The first precessional degree (2012) near the meridian (72 ° E) was related to the date of April 11, 2012 where a massive earthquake of 8.6 on the Richter scale, followed by several aftershocks, one of 8.2 degrees struck Indonesia with epicenter near Banda Aceh. Five months after that date, Matthias Delescluse et.al (2012), Han Yue et.al (2012), and Fred F. Pollitz et.al, (2012), explained that the two violent earthquakes would be evidence of a break in the Indo-Australian Plate Tectonics caused earthquakes around the world. It is noted that in one of the opposite meridian there was a correlation between the vernal point and the indo-australian plate.

Insights into the Drought and Heat Avoidance Mechanism in Summer-Dormant Mediterranean Tall Fescue

PubMed Central

Missaoui, Ali M.; Malinowski, Dariusz P.; Pinchak, William E.; Kigel, Jaime

2017-01-01

Summer dormancy is an evolutionary response that some perennial cool-season grasses adopted as an avoidance strategy to escape summer drought and heat. It is correlated with superior survival after severe summer droughts in many perennial grass species originating from Mediterranean environments. Understanding the genetic mechanism and environmental determinants of summer dormancy is important for interpreting the evolutionary history of seasonal dormancy and for the development of genomic tools to improve the efficiency of genetic selection for this important trait. The objectives of this research are to assess morphological and biochemical attributes that seem to be specific for the characterization of summer dormancy in tall fescue, and to validate the hypothesis that genes underlying stem determinacy might be involved in the mechanism of summer dormancy. Our results suggest that vernalization is an important requirement in the onset of summer dormancy in tall fescue. Non-vernalized tall fescue plants do not exhibit summer dormancy as vernalized plants do and behave more like summer-active types. This is manifested by continuation of shoot growth and high root activity in water uptake during summer months. Therefore, summer dormancy in tall fescue should be tested only in plants that underwent vernalization and are not subjected to water deficit during summer months. Total phenolic concentration in tiller bases (antioxidants) does not seem to be related to vernalization. It is most likely an environmental response to protect meristems from oxidative stress. Sequence analysis of the TFL1 homolog CEN gene from tall fescue genotypes belonging to summer-dormant and summer-active tall fescue types showed a unique deletion of three nucleotides specific to the dormant genotypes. Higher tiller bud numbers in dormant plants that were not allowed to flower and complete the reproductive cycle, confirmed that stem determinacy is a major component in the mechanism of summer dormancy. The number of variables identified in these studies as potential players in summer dormancy in tall fescue including vernalization, TFL1/CEN, water status, and protection from oxidative stress are a further confirmation that summer dormancy is a quantitative trait controlled by several genes with varying effects and prone to genotype by environment interactions. PMID:29204152

Insights into the Drought and Heat Avoidance Mechanism in Summer-Dormant Mediterranean Tall Fescue.

PubMed

Missaoui, Ali M; Malinowski, Dariusz P; Pinchak, William E; Kigel, Jaime

2017-01-01

Summer dormancy is an evolutionary response that some perennial cool-season grasses adopted as an avoidance strategy to escape summer drought and heat. It is correlated with superior survival after severe summer droughts in many perennial grass species originating from Mediterranean environments. Understanding the genetic mechanism and environmental determinants of summer dormancy is important for interpreting the evolutionary history of seasonal dormancy and for the development of genomic tools to improve the efficiency of genetic selection for this important trait. The objectives of this research are to assess morphological and biochemical attributes that seem to be specific for the characterization of summer dormancy in tall fescue, and to validate the hypothesis that genes underlying stem determinacy might be involved in the mechanism of summer dormancy. Our results suggest that vernalization is an important requirement in the onset of summer dormancy in tall fescue. Non-vernalized tall fescue plants do not exhibit summer dormancy as vernalized plants do and behave more like summer-active types. This is manifested by continuation of shoot growth and high root activity in water uptake during summer months. Therefore, summer dormancy in tall fescue should be tested only in plants that underwent vernalization and are not subjected to water deficit during summer months. Total phenolic concentration in tiller bases (antioxidants) does not seem to be related to vernalization. It is most likely an environmental response to protect meristems from oxidative stress. Sequence analysis of the TFL1 homolog CEN gene from tall fescue genotypes belonging to summer-dormant and summer-active tall fescue types showed a unique deletion of three nucleotides specific to the dormant genotypes. Higher tiller bud numbers in dormant plants that were not allowed to flower and complete the reproductive cycle, confirmed that stem determinacy is a major component in the mechanism of summer dormancy. The number of variables identified in these studies as potential players in summer dormancy in tall fescue including vernalization, TFL1/CEN , water status, and protection from oxidative stress are a further confirmation that summer dormancy is a quantitative trait controlled by several genes with varying effects and prone to genotype by environment interactions.

Experimental canopy removal enhances diversity of vernal pond amphibians.

PubMed

Skelly, David K; Bolden, Susan R; Freidenburg, L Kealoha

2014-03-01

Vernal ponds are often treated as protected environments receiving special regulation and management. Within the landscapes where they are found, forest vegetation frequently dominates surrounding uplands and can grow to overtop and shade pond basins. Two bodies of research offer differing views of the role of forest canopy for vernal pond systems. Studies of landscape conversion suggest that removing forest overstory within uplands can cause local extinctions of amphibians by altering terrestrial habitat or hindering movement. Studies of canopy above pond basins imply an opposite relationship; encroachment of overstory vegetation can be associated with local extinctions potentially via changes in light, thermal, and food resource environments. Unresolved uncertainties about the role of forest canopy reveal significant gaps in our understanding of wetland species distributions and dynamics. Any misunderstanding of canopy influences is simultaneously important to managers because current practices emphasize promoting or conserving vegetation growth particularly within buffers immediately adjacent to ponds. We evaluated this apparent contradiction by conducting a landscape-scale, long-term experiment using 14 natural vernal ponds. Tree felling at six manipulated ponds was limited in spatial scope but was nevertheless effective in increasing water temperature. Compared with eight control ponds, manipulated ponds maintained more amphibian species during five years post-manipulation. There was little evidence that any species was negatively influenced, and the reproductive effort of species for which we estimated egg inputs maintained pretreatment population densities in manipulated compared with control ponds. Overall, our experiment shows that a carefully circumscribed reduction of overhead forest canopy can enhance the capacity of vernal ponds to support wildlife diversity and suggests a scale dependence of canopy influences on amphibians. These findings have implications for the connection between current wetland management practices and the goals of wetland stewardship and conservation of wetland-dependent species.

Life-history evolution when Lestes damselflies invaded vernal ponds.

PubMed

De Block, Marjan; McPeek, Mark A; Stoks, Robby

2008-02-01

We know little about the macroevolution of life-history traits along environmental gradients, especially with regard to the directionality compared to the ancestral states and the associated costs to other functions. Here we examine how age and size at maturity evolved when Lestes damselflies shifted from their ancestral temporary pond habitat (i.e., ponds that may dry once every decade or so) to extremely ephemeral vernal ponds (ponds that routinely dry completely each year). Larvae of three species were reared from eggs until emergence under different levels of photoperiod and transient starvation stress. Compared to the two temporary-pond Lestes, the phylogenetically derived vernal-pond Lestes dryas developed more rapidly across photoperiod treatments until the final instar, and only expressed plasticity in development time in the final instar under photoperiod levels that simulated a later hatching date. The documented change in development rate can be considered adaptive and underlies the success of the derived species in vernal ponds. Results suggest associated costs of faster development are lower mass at maturity and lower immune function after transient starvation stress. These costs may not only have impeded further evolution of the routine development rate to what is physiologically maximal, but also maintained some degree of plasticity to time constraints when the habitat shift occurred.

Shield ulcers and plaques of the cornea in vernal keratoconjunctivitis.

PubMed

Cameron, J A

1995-06-01

Shield-shaped corneal ulcers and plaques are serious sight-threatening corneal manifestations of vernal keratoconjunctivitis. There are few reports describing the management of these patients and their outcomes. The clinical presentation, treatment, and outcome of 66 shield ulcers and/or plaques in 55 eyes of 41 patients with vernal keratoconjunctivitis were studied in this retrospective study of patients treated at King Khaled Eye Specialist Hospital during an 11-year period. Patients with shield ulcers where the base of the ulcer was transparent usually had rapid re-epithelialization and an excellent visual outcome with medical treatment alone. Patients with shield ulcers and visible plaque formation had delayed re-epithelialization when receiving only medical treatment. Complications of delayed re-epithelialization consisted of bacterial keratitis in five eyes, amblyopia in one eye, and strabismus in one patient. Patients with shield ulcers and/or plaques that do not re-epithelialize once active vernal keratoconjunctivitis has been controlled should have surgical intervention. In this series, a simple scraping of the base and margins of the ulcer with removal of the inflammatory material (i.e., the plaque) resulted in rapid re-epithelialization in 20 of 23 ulcers and plaques. An algorithm for treating shield ulcers and/or plaques is presented based on the experience at this institution.

FLC expression is down-regulated by cold treatment in Diplotaxis tenuifolia (wild rocket), but flowering time is unaffected.

PubMed

Taylor, Jemma L; Massiah, Andrea; Kennedy, Sue; Hong, Yiguo; Jackson, Stephen D

2017-07-01

Wild rocket (Diplotaxis tenuifolia) has become a very popular salad leaf due to its peppery taste. It is part of the Brassicaceae family and thus has a high level of homology at the DNA level to other Brassica species including Arabidopsis thaliana. The vernalization and photoperiodic requirements of wild rocket have not been reported to date. Photoperiodic experiments described here demonstrate that rocket is a facultative long day plant. To investigate the vernalization requirement, both seed and young plants were given vernalization treatments at 4°C for different lengths of time. A rocket homologue of FLOWERING LOCUS C (DtFLC) was isolated and shown to functionally complement the Arabidopsis FRI + flc3 null mutant. Whilst the expression of DtFLC was significantly reduced after just one week of cold treatment, cold treatments of two to eight weeks had no significant effect on bolting time of wild rocket indicating that rocket does not have a vernalization requirement. These findings illustrate that important fundamental differences can exist between model and crop plant species, such as in this case where down-regulation of DtFLC expression does not enable earlier flowering in wild rocket as it does in Arabidopsis and many other Brassica species. Copyright © 2017 Elsevier GmbH. All rights reserved.

Geomagnetic Storm Effects at F1 Layer Altitudes in Various Periods of Solar Activity (Irkutsk Station)

NASA Astrophysics Data System (ADS)

Kushnarenko, G. P.; Yakovleva, O. E.; Kuznetsova, G. M.

2018-03-01

The influence of geomagnetic disturbances on electron density Ne at F1 layer altitudes in different conditions of solar activity during the autumnal and vernal seasons of 2003-2015, according to the data from the Irkutsk digital ionospheric station (52° N, 104° E) is examined. Variations of Ne at heights of 150-190 km during the periods of twenty medium-scale and strong geomagnetic storms have been analyzed. At these specified heights, a vernal-autumn asymmetry of geomagnetic storm effects is discovered in all periods of solar activity of 2003-2015: a considerable Ne decrease at a height of 190 km and a weaker effect at lower levels during the autumnal storms. During vernal storms, no significant Ne decrease as compared with quiet conditions was registered over the entire analyzed interval of 150-190 km.

A case for ancient springs in Arabia Terra, Mars.

PubMed

Allen, Carlton C; Oehler, Dorothy Z

2008-12-01

Based on new image data from the High Resolution Imaging Science Experiment (HiRISE) on Mars Reconnaissance Orbiter (MRO), a case can be made that several structures in Vernal Crater, Arabia Terra are ancient springs. This interpretation is based on comprehensive geomorphologic analysis coupled with assessment of multiple hypotheses. The structures identified extend across several kilometers and are exceptional in that nothing with their detail and scale has been reported from Mars. The deposits are associated with an extensive fracture system that may have facilitated upward flow of warm fluids. Several additional spring-like features occur in Vernal Crater, and it is possible that these are part of a major province of spring activity. Since springs are environments where life could have evolved on Mars, where that life could have found refuge as the climate became colder and drier, and where signatures of that life may be preserved, Vernal Crater may be a site of major astrobiological importance.

Adaptation of barley to mild winters: A role for PPDH2

PubMed Central

2011-01-01

Background Understanding the adaptation of cereals to environmental conditions is one of the key areas in which plant science can contribute to tackling challenges presented by climate change. Temperature and day length are the main environmental regulators of flowering and drivers of adaptation in temperate cereals. The major genes that control flowering time in barley in response to environmental cues are VRNH1, VRNH2, VRNH3, PPDH1, and PPDH2 (candidate gene HvFT3). These genes from the vernalization and photoperiod pathways show complex interactions to promote flowering that are still not understood fully. In particular, PPDH2 function is assumed to be limited to the ability of a short photoperiod to promote flowering. Evidence from the fields of biodiversity, ecogeography, agronomy, and molecular genetics was combined to obtain a more complete overview of the potential role of PPDH2 in environmental adaptation in barley. Results The dominant PPDH2 allele is represented widely in spring barley cultivars but is found only occasionally in modern winter cultivars that have strong vernalization requirements. However, old landraces from the Iberian Peninsula, which also have a vernalization requirement, possess this allele at a much higher frequency than modern winter barley cultivars. Under field conditions in which the vernalization requirement of winter cultivars is not satisfied, the dominant PPDH2 allele promotes flowering, even under increasing photoperiods above 12 h. This hypothesis was supported by expression analysis of vernalization-responsive genotypes. When the dominant allele of PPDH2 was expressed, this was associated with enhanced levels of VRNH1 and VRNH3 expression. Expression of these two genes is needed for the induction of flowering. Therefore, both in the field and under controlled conditions, PPDH2 has an effect of promotion of flowering. Conclusions The dominant, ancestral, allele of PPDH2 is prevalent in southern European barley germplasm. The presence of the dominant allele is associated with early expression of VRNH1 and early flowering. We propose that PPDH2 promotes flowering of winter cultivars under all non-inductive conditions, i.e. under short days or long days in plants that have not satisfied their vernalization requirement. This mechanism is indicated to be a component of an adaptation syndrome of barley to Mediterranean conditions. PMID:22098798

O3, VOC, NOx, PM2.5 and Meteorological Measurements during an Inversion Episode in Utah's Uinta Basin

NASA Astrophysics Data System (ADS)

Moore, K. D.; Martin, R. S.; Hill, S.; Shorthill, H.

2011-12-01

Recent measurements found high winter ozone (O3) at several locations in northeastern Utah's Uinta Basin. Similar to Wyoming's Upper Green River Basin, the area has seen recent growth in the gas/oil sector. As a part of a more comprehensive project, a study was conducted examining the relationships between O3, volatile organic compounds (VOCs), nitrogen oxides (NOx), fine particulate matter (PM2.5), and meteorology during an inversion episode. The study took place February 21-25, 2011 at the area's population center (Vernal) and at an area within the gas/oil fields (Red Wash). At both sites, O3 and NOx, displayed expected diurnal behaviors. The 1-hr O3 concentrations ranged from 10-90 ppb at Vernal and 34-107 ppb at Red Wash. Average diurnal O3 maximums (±95% CI) were 70.4±12.1 ppb and 76.8±12.6 ppb at Vernal and Red Wash, respectively. The Red Wash average O3 diurnal curve was broader than that at Vernal and did not titrate out as rapidly in the evening and morning hours. In contrast, higher NOx was observed at Vernal, with hourly averaged values ranging from 4.5-80.2 ppb, compared to 1.5-29.7 ppb at Red Wash. The NOx tended to follow traffic patterns at both sites, with morning maximum 1-hr averages of 40.8±12.1 ppb and 20.2±8.7 ppb, respectively. A portable O3 monitor attached to a tethered balloon found high ground level O3 (70-80 ppb) and a decrease to relatively constant levels (50-60 ppb) by 150 m agl. Methane and non-methane hydrocarbons (NHMC) were collected at least twice per day using whole vial and sorbent cartridges, followed by GC-FID and GC-MS analysis. The gas/oil field samples (Red Wash) found significantly higher CH4 levels (2.71±0.32 ppm) compared to the Vernal samples (1.82±0.14 ppm). The NMHC were likewise higher at the Red Wash location. Calculation of the maximum incremental reactivity (MIR) estimated that methane, ethane, propane, acetylene, remaining alkanes, alkenes, and aromatics accounted for 7.9%, 18.5%, 4.7%, 1.0%, 20.6%, 46.7%, and 0.6%, respectively, of the Vernal ozone formation potential. For the Red Wash site, the equivalent MIRs were 7.0%, 10.9%, 4.7%, 0.5%, 32.4%, 39.6%, and 4.8%. Five collocated AirMetrics MiniVol samplers measured 23-hr average PM2.5 concentrations at each site. Collocation allowed various analyses for compositional determination. The PM2.5 levels averaged 16.4±3.9 at Vernal and 8.9±0.3 μg/m3 Red Wash. At both sites, carbonaceous material made up around 80% of the PM2.5. Elemental carbon accounted for 13.4% and 12.8% of the PM2.5 and organic carbon contributed 64.1% and 69.6%, at Vernal and Red Wash, respectively. Vertical meteorology was examined through the use of tethersondes. The period was characterized by a stagnant high pressure system until the final day of the study when an active storm system moved through the area. Vertical temperature profiles showed strong temperature inversions from the ground to >350 m agl and a very stable atmosphere throughout the study. Winds were almost always light (≤2 m/s) and changed direction through the vertical profile. Diurnal variation in the height of the surface layer was observed varied from 20-80 m agl.

Regulation of vernal migration in Gambel's white-crowned sparrows: Role of thyroxine and triiodothyronine.

PubMed

Pérez, Jonathan H; Furlow, J David; Wingfield, John C; Ramenofsky, Marilyn

2016-08-01

Appropriate timing of migratory behavior is critical for migrant species. For many temperate zone birds in the spring, lengthening photoperiod is the initial cue leading to morphological, physiological and behavior changes that are necessary for vernal migration and breeding. Strong evidence has emerged in recent years linking thyroid hormone signaling to the photoinduction of breeding in birds while more limited information suggest a potential role in the regulation of vernal migration in photoperiodic songbirds. Here we investigate the development and expression of the vernal migratory life history stage in captive Gambel's white-crowned sparrows (Zonotrichia leucophrys gambelii) in a hypothyroidic state, induced by chemical inhibition of thyroid hormone production. To explore possible variations in the effects of the two thyroid hormones, triiodothyronine and thyroxine, we subsequently performed a thyroid inhibition coupled with replacement therapy. We found that chemical inhibition of thyroid hormones resulted in complete abolishment of mass gain, fattening, and muscle hypertrophy associated with migratory preparation as well as resulting in failure to display nocturnal restlessness behavior. Replacement of thyroxine rescued all of these elements to near control levels while triiodothyronine replacement displayed partial or delayed rescue. Our findings support thyroid hormones as being necessary for the expression of changes in morphology and physiology associated with migration as well as migratory behavior itself. Copyright © 2016 Elsevier Inc. All rights reserved.

Teasing Apart the Effects of Atmospheric Nitrogen Deposition from Grazing and Drought in Vernal Pool Wetlands and Adjacent Grassland

NASA Astrophysics Data System (ADS)

Fogel, M. L.; Araiza, D. N.; Nakamoto, B. J.; Vega, M. C.; Bradley, C. J.; Swarth, C. W.

2014-12-01

The remaining vernal pools flanking California's Central Valley may be protected from development, but they are not pristine environments. At UC Merced's Vernal Pools and Grassland Reserve, dairy cattle grazing is a fact of life, needed to keep non-native grasses from encroaching on and dominating these low lying, ephemeral pools. In addition to grazing, atmospheric deposition of nitrogen from adjacent agricultural farms and dairies has affected the biogeochemical cycling here, in particular because the area has never been ploughed and is essentially a terminal, interior catchment with almost no outputs. For the past two years, the region has been subjected to extreme drought resulting in altered patterns in vernal pool development and nutrient exchange. We are using stable nitrogen, carbon, and hydrogen isotopes in organic and inorganic reservoirs to understand which of the three stressors (e.g. N loading, grazing, or drought) affects the ecosystem functioning the most. Simple measurements of residual dry matter (the rancher's standard) coupled with soil analyses and plant distribution, isotopic composition, and productivity will be presented at a landscape scale. Atmospheric deposition, as rain in winter and early spring and as dust in summer and fall, delivers substantial ammonium and nitrate to the Reserve and could be traced back to nearby hotspots, as well as from major storm systems. Concentrations and compositions of N in precipitation were highly variable depending on when the last storm event had occurred. Ammonia/ammonium in rainwater ranged from δ15N= -24 to +7‰, probably explaining the large range in the δ15N of plant tissues collected in winter/spring (-4.3 to +10.9‰,) and that of extractable ammonium from surface soils (δ15N = -7 to +13‰). Interior grassland and vernal pool ecosystems, with substantial inputs and little to no outputs, host biogeochemical processes that amplify heterogeneity on relative small scales.

Vernal Point and Anthropocene

NASA Astrophysics Data System (ADS)

Chavez-Campos, Teodosio; Chavez S, Nadia; Chavez-Sumarriva, Israel

2014-05-01

The time scale was based on the internationally recognized formal chronostratigraphical /geochronological subdivisions of time: The Phanerozoic Eonathem/Eon; the Cenozoic Erathem/Era; the Quaternary System/Period; the Pleistocene and Holocene Series/Epoch. The Quaternary was divided into: (1) The Pleistocene that was characterized by cycles of glaciations (intervals between 40,000 and 100,000 years). (2) The Holocene that was an interglacial period that began about 12,000 years ago. It was believed that the Milankovitch cycles (eccentricity, axial tilt and the precession of the equinoxes) were responsible for the glacial and interglacial Holocene periods. The magnetostratigraphic units have been widely used for global correlations valid for Quaternary. The gravitational influence of the sun and moon on the equatorial bulges of the mantle of the rotating earth causes the precession of the earth. The retrograde motion of the vernal point through the zodiacal band is 26,000 years. The Vernal point passes through each constellation in an average of 2000 years and this period of time was correlated to Bond events that were North Atlantic climate fluctuations occurring every ≡1,470 ± 500 years throughout the Holocene. The vernal point retrogrades one precessional degree approximately in 72 years (Gleissberg-cycle) and approximately enters into the Aquarius constellation on March 20, 1940. On earth this entry was verify through: a) stability of the magnetic equator in the south central zone of Peru and in the north zone of Bolivia, b) the greater intensity of equatorial electrojet (EEJ) in Peru and Bolivia since 1940. With the completion of the Holocene and the beginning of the Anthropocene (widely popularized by Paul Crutzen) it was proposed the date of March 20, 1940 as the beginning of the Anthropocene. The date proposed was correlated to the work presented in IUGG (Italy 2007) with the title "Cusco base meridian for the study of geophysical data"; Cusco was proposed as a prime meridian that was based on: (1) the new prime meridian (72º W == 0º) was parallel to the Andes and its projection the meridian (108° E == 180º) intersects the Tibetan plate (Asia). (2) On earth these two areas present the greatest thickness of the crust with an average depth of 70 kilometers. The aim was to synchronize the earth sciences phenomena (e.g. geology, geophysics, etc.). During the Holocene the vernal point retrograde 12,000 years and enters into the Aquarius constellation on March 20, 1940. That date was proposed as the beginning of the Anthropocene because on that date proposed the vernal point passes from the Pisces constellation to Aquarius constellation, besides that event around the date proposed, the Second World War begun. This event was a global change in the earth. The base of the Anthropocene was defined by the passage of the vernal point from the Pisces Constellation to the Aquarius constellation.

Monitoring the vernal advancement and retrogradation (green wave effect) of natural vegetation

NASA Technical Reports Server (NTRS)

Rouse, J. W., Jr. (Principal Investigator)

1973-01-01

The author has identified the following significant results. A comprehensive review of ERTS-1 MSS color composite imagery, obtained during the autumnal and vernal phases over the Great Plains Corridor test sites, shows that temporal changes in rangeland vegetation can be manually interpreted. The degree to which manual interpretations can be made from the MSS color composites appears to be limited primarily by variations in image reproduction quality. The vernal advancement and other phenophase related phenomena are observable from cycle to cycle and within a single frame for rangeland vegetation. Vegetation changes due to environmental conditions among the test sites and among grazing treatments within test sites are readily observable. An investigation has been initiated which will evaluate band-to-band ratios as an index of rangeland vegetation condition. Data currently available from August 1972 through April 1973 for the five southern test sites are being used to characterize band-to-band ratios as a function of quantity and quality of rangeland vegetation at each of the test sites.

Supra-tarsal injection of dexamethasone in the treatment of patients with refractory vernal keratoconjunctivitis.

PubMed

Lisanework, Mulu

2003-01-01

The response to supratarsal injection of dexamethasone in severe refractory vernal keratoconjunctivitis was studied in 20 patients (14 males and 6 females) at the ophthalmology department of Menelik II Hospital, Addis Ababa in 1997. Majority of the patients were in the age range of 11-20 years with mean age of 14.6 years. Although all patients experienced relief of symptoms in the first 2 days of dexamethasone injection, symptoms recurred in the majority 16 (80%) of the patients. Cobble stone papillae and limbal signs disappeared in 2 (11%) and 5 (38%) of the patients respectively. Resolution of limbal form of the disease is more dramatic when compared to the palpebral form. This study showed that supratarsal injection of dexamethasone in severe vernal keratoconjunctivitis is effective in few, partially effective in some and ineffective in many of our patients. Further studies, particularly a randomized controlled trial is recommended prior to utilization of this new therapeutic modality as a standard form of treatment in Ethiopian patients.

Uranium hydrogeochemical and stream sediment reconnaissance data release for the Red Creek quartzite special study area, Vernal NTMS Quadrangle, Utah/Colorado, including concentrations of forty-six additional elements

DOE Office of Scientific and Technical Information (OSTI.GOV)

Goff, S.; George, W.E.; Apel, C.T.

1981-04-01

Totals of 22 water and 140 sediment samples were collected from 148 locations in the study area. The study area, in the north-central portion of the Vernal NTMS quadrangle, is covered by four 7-1/2' topographic maps: Dutch John, Goslin Mountain, and Clav Basin, Utah; and Willow Creek Butte, Utah/Colorado. Additional HSSR data are available for the entire Vernal quadrangle (Purson, 1980). All field and analytical data are presented in Appendix I. Figure 1 is an index and sample location map that can be used in conjunction with the 1:250,000-scale topographic map of the Vernal quadrangle (USGS, 1954). Standarized field, analytical,more » and data base management procedures were followed in all phases of the study. These procedures are described briefly in Appendix II-A and in reports by Sharp (1977), Hues et al (1977), Sharp and Aamodt (1978), Cheadle (1977), and Kosiewicz (1979). The data presented in Appendix I are available on magnetic tape from GJOIS Project, Union Carbide Corporation (UCC-ND), Computer Applications Department, 4500 North Building, Oak Ridge National Laboratory, P.O. Box X, Oak Ridge, Tennessee 37830. Because this is simply a data release, intended to make the data available to the DOE and the public as quickly as possible, no discussion of the geology of the region, uranium occurrences, or data evaluation is included.« less

Morphology, Carbohydrate Composition and Vernalization Response in a Genetically Diverse Collection of Asian and European Turnips (Brassica rapa subsp. rapa)

PubMed Central

Zhang, Ningwen; Zhao, Jianjun; Lens, Frederic; de Visser, Joan; Menamo, Temesgen; Fang, Wen; Xiao, Dong; Bucher, Johan; Basnet, Ram Kumar; Lin, Ke; Cheng, Feng; Wang, Xiaowu; Bonnema, Guusje

2014-01-01

Brassica rapa displays enormous morphological diversity, with leafy vegetables, turnips and oil crops. Turnips (Brassica rapa subsp. rapa) represent one of the morphotypes, which form tubers and can be used to study the genetics underlying storage organ formation. In the present study we investigated several characteristics of an extensive turnip collection comprising 56 accessions from both Asia (mainly Japanese origin) and Europe. Population structure was calculated using data from 280 evenly distributed SNP markers over 56 turnip accessions. We studied the anatomy of turnip tubers and measured carbohydrate composition of the mature turnip tubers of a subset of the collection. The variation in 16 leaf traits, 12 tuber traits and flowering time was evaluated in five independent experiments for the entire collection. The effect of vernalization on flowering and tuber formation was also investigated. SNP marker profiling basically divided the turnip accessions into two subpopulations, with admixture, generally corresponding with geographical origin (Europe or Asia). The enlarged turnip tuber consists of both hypocotyl and root tissue, but the proportion of the two tissues differs between accessions. The ratio of sucrose to fructose and glucose differed among accessions, while generally starch content was low. The evaluated traits segregated in both subpopulations, with leaf shape, tuber colour and number of shoots per tuber explaining most variation between the two subpopulations. Vernalization resulted in reduced flowering time and smaller tubers for the Asian turnips whereas the European turnips were less affected by vernalization. PMID:25474111

The role of cold cues at different life stages on germination and flowering phenology.

PubMed

Rubin, Matthew J; Friedman, Jannice

2018-04-23

The timing of major phenological transitions is critical to lifetime fitness, and life history theory predicts differences for annual and perennial plants. To correctly time these transitions, many plants rely on environmental cues such as exposure to extended periods of cold, which may occur at different stages throughout their lifetime. We studied the role of cold at different life stages, by jointly exposing seed (stratification) and rosettes (vernalization) to cold. We used 23 populations of Mimulus guttatus, which vary from annuals to perennials, and investigated how cold at one or both stages affected germination, flowering, growth, and biomass. We found that stratification and vernalization interact to affect life cycle transitions, and that cold at either stage could synchronize flowering phenology. For perennials, either stratification or vernalization is necessary for maximum flowering. We also found that germination timing covaried with later traits. Moreover, plants from environments with dissimilar climates displayed different phenological responses to stratification or vernalization. In general, cold is more important for seed germination in annuals and plants from environments with warm temperatures and variable precipitation. In contrast, cold is more important for flowering in perennials: it accelerates flowering in plants from lower precipitation environments, and it increases flowering proportion in plants from cooler, more stable precipitation environments. We discuss our findings in the context of the variable environments plants experience within a population and the variation encountered across the biogeographic native range of the species. © 2018 Botanical Society of America.

Improving management of small natural features on private lands by negotiating the science-policy boundary for Maine vernal pools.

PubMed

Calhoun, Aram J K; Jansujwicz, Jessica S; Bell, Kathleen P; Hunter, Malcolm L

2014-07-29

Vernal pools are far more important for providing ecosystem services than one would predict based on their small size. However, prevailing resource-management strategies are not effectively conserving pools and other small natural features on private lands. Solutions are complicated by tensions between private property and societal rights, uncertainties over resource location and function, diverse stakeholders, and fragmented regulatory authority. The development and testing of new conservation approaches that link scientific knowledge, stakeholder decision-making, and conservation outcomes are important responses to this conservation dilemma. Drawing from a 15-y history of vernal pool conservation efforts in Maine, we describe the coevolution of pool conservation and research approaches, focusing on how research-based knowledge was produced and used in support of management decisions. As management shifted from reactive, top-down approaches to proactive and flexible approaches, research shifted from an ecology-focused program to an interdisciplinary program based on social-ecological systems. The most effective strategies for linking scientific knowledge with action changed as the decision-makers, knowledge needs, and context for vernal pool management advanced. Interactions among stakeholders increased the extent to which knowledge was coproduced and shifted the objective of stakeholder engagement from outreach to research collaboration and development of innovative conservation approaches. New conservation strategies were possible because of the flexible, solutions-oriented collaborations and trust between scientists and decision-makers (fostered over 15 y) and interdisciplinary, engaged research. Solutions to the dilemma of conserving small natural features on private lands, and analogous sustainability science challenges, will benefit from repeated negotiations of the science-policy boundary.

The promoter of the cereal VERNALIZATION1 gene is sufficient for transcriptional induction by prolonged cold.

PubMed

Alonso-Peral, Maria M; Oliver, Sandra N; Casao, M Cristina; Greenup, Aaron A; Trevaskis, Ben

2011-01-01

The VERNALIZATION1 (VRN1) gene of temperate cereals is transcriptionally activated by prolonged cold during winter (vernalization) to promote flowering. To investigate the mechanisms controlling induction of VRN1 by prolonged cold, different regions of the VRN1 gene were fused to the GREEN FLUORESCENT PROTEIN (GFP) reporter and expression of the resulting gene constructs was assayed in transgenic barley (Hordeum vulgare). A 2 kb segment of the promoter of VRN1 was sufficient for GFP expression in the leaves and shoot apex of transgenic barley plants. Fluorescence increased at the shoot apex prior to inflorescence initiation and was subsequently maintained in the developing inflorescence. The promoter was also sufficient for low-temperature induction of GFP expression. A naturally occurring insertion in the proximal promoter, which is associated with elevated VRN1 expression and early flowering in some spring wheats, did not abolish induction of VRN1 transcription by prolonged cold, however. A translational fusion of the promoter and transcribed regions of VRN1 to GFP, VRN1::GFP, was localised to nuclei of cells at the shoot apex of transgenic barley plants. The distribution of VRN1::GFP at the shoot apex was similar to the expression pattern of the VRN1 promoter-GFP reporter gene. Fluorescence from the VRN1::GFP fusion protein increased in the developing leaves after prolonged cold treatment. These observations suggest that the promoter of VRN1 is targeted by mechanisms that trigger vernalization-induced flowering in economically important temperate cereal crops.

Epigenomics and bolting tolerance in sugar beet genotypes.

PubMed

Hébrard, Claire; Peterson, Daniel G; Willems, Glenda; Delaunay, Alain; Jesson, Béline; Lefèbvre, Marc; Barnes, Steve; Maury, Stéphane

2016-01-01

In sugar beet (Beta vulgaris altissima), bolting tolerance is an essential agronomic trait reflecting the bolting response of genotypes after vernalization. Genes involved in induction of sugar beet bolting have now been identified, and evidence suggests that epigenetic factors are involved in their control. Indeed, the time course and amplitude of DNA methylation variations in the shoot apical meristem have been shown to be critical in inducing sugar beet bolting, and a few functional targets of DNA methylation during vernalization have been identified. However, molecular mechanisms controlling bolting tolerance levels among genotypes are still poorly understood. Here, gene expression and DNA methylation profiles were compared in shoot apical meristems of three bolting-resistant and three bolting-sensitive genotypes after vernalization. Using Cot fractionation followed by 454 sequencing of the isolated low-copy DNA, 6231 contigs were obtained that were used along with public sugar beet DNA sequences to design custom Agilent microarrays for expression (56k) and methylation (244k) analyses. A total of 169 differentially expressed genes and 111 differentially methylated regions were identified between resistant and sensitive vernalized genotypes. Fourteen sequences were both differentially expressed and differentially methylated, with a negative correlation between their methylation and expression levels. Genes involved in cold perception, phytohormone signalling, and flowering induction were over-represented and collectively represent an integrative gene network from environmental perception to bolting induction. Altogether, the data suggest that the genotype-dependent control of DNA methylation and expression of an integrative gene network participate in bolting tolerance in sugar beet, opening up perspectives for crop improvement. © The Author 2015. Published by Oxford University Press on behalf of the Society for Experimental Biology.

The effect of day-neutral mutations in barley and wheat on the interaction between photoperiod and vernalization.

PubMed

Turner, Adrian S; Faure, Sébastien; Zhang, Yang; Laurie, David A

2013-09-01

Vernalization-2 (Vrn-2) is the major flowering repressor in temperate cereals. It is only expressed under long days in wild-type plants. We used two day-neutral (photoperiod insensitive) mutations that allow rapid flowering in short or long days to investigate the day length control of Vrn-2. The barley (Hordeum vulgare) early maturity8 (eam8) mutation affects the barley ELF3 gene. eam8 mutants disrupt the circadian clock resulting in elevated expression of Ppd-H1 and the floral activator HvFT1 under short or long days. When eam8 was crossed into a genetic background with a vernalization requirement Vrn-2 was expressed under all photoperiods and the early flowering phenotype was partially repressed in unvernalized (UV) plants, likely due to competition between the constitutively active photoperiod pathway and the repressing effect of Vrn-2. We also investigated the wheat (Triticum aestivum) Ppd-D1a mutation. This differs from eam8 in causing elevated levels of Ppd-1 and TaFT1 expression without affecting the circadian clock. We used genotypes that differed in "short-day vernalization". Short days were effective in promoting flowering in individuals wild type at Ppd-D1, but not in individuals that carry the Ppd-D1a mutation. The latter showed Vrn-2 expression in short days. In summary, eam8 and Ppd-D1a mimic long days in terms of photoperiod response, causing Vrn-2 to become aberrantly expressed (in short days). As Ppd-D1a does not affect the circadian clock, this also shows that clock regulation of Vrn-2 operates indirectly through one or more downstream genes, one of which may be Ppd-1.

Improving management of small natural features on private lands by negotiating the science–policy boundary for Maine vernal pools

PubMed Central

Calhoun, Aram J. K.; Jansujwicz, Jessica S.; Bell, Kathleen P.; Hunter, Malcolm L.

2014-01-01

Vernal pools are far more important for providing ecosystem services than one would predict based on their small size. However, prevailing resource-management strategies are not effectively conserving pools and other small natural features on private lands. Solutions are complicated by tensions between private property and societal rights, uncertainties over resource location and function, diverse stakeholders, and fragmented regulatory authority. The development and testing of new conservation approaches that link scientific knowledge, stakeholder decision-making, and conservation outcomes are important responses to this conservation dilemma. Drawing from a 15-y history of vernal pool conservation efforts in Maine, we describe the coevolution of pool conservation and research approaches, focusing on how research-based knowledge was produced and used in support of management decisions. As management shifted from reactive, top-down approaches to proactive and flexible approaches, research shifted from an ecology-focused program to an interdisciplinary program based on social–ecological systems. The most effective strategies for linking scientific knowledge with action changed as the decision-makers, knowledge needs, and context for vernal pool management advanced. Interactions among stakeholders increased the extent to which knowledge was coproduced and shifted the objective of stakeholder engagement from outreach to research collaboration and development of innovative conservation approaches. New conservation strategies were possible because of the flexible, solutions-oriented collaborations and trust between scientists and decision-makers (fostered over 15 y) and interdisciplinary, engaged research. Solutions to the dilemma of conserving small natural features on private lands, and analogous sustainability science challenges, will benefit from repeated negotiations of the science–policy boundary. PMID:25002496

The VERRUN and VERNAL software systems for steady-state visual evoked response experimentation

NASA Technical Reports Server (NTRS)

Levison, W. H.; Zacharias, G. L.

1984-01-01

Two digital computer programs were developed for use in experiments involving steady-state visual evoked response (VER): VERRUN, whose primary functions are to generate a sum-of-sines (SOS) stimulus and to digitize and store electro-cortical response; and VERNAL, which provides both time- and frequency-domain metrics of the evoked response. These programs were coded in FORTRAN for operation on the PDP-11/34, using the RSX-11 Operating System, and the PDP-11/23, using the RT-11 Operating System. Users' and programmers' guides to these programs are provided, and guidelines for model analysis of VER data are suggested.

Livestock Grazing as a Driver of Vernal Pool Ecohydrology

NASA Astrophysics Data System (ADS)

Michaels, J.; McCarten, N. F.

2017-12-01

Vernal pools are seasonal wetlands that host rare plant communities of high conservation priority. Plant community composition is largely driven by pool hydroperiod. A previous study found that vernal pools grazed by livestock had longer hydroperiods compared with pools excluded from grazing for 10 years, and suggests that livestock grazing can be used to protect plant diversity. It is important to assess whether observed differences are due to the grazing or due to water balance variables including upland discharge into or out of the pools since no a priori measurements were made of the hydrology prior to grazing. To address this question, in 2016 we compared 15 pools that have been grazed continuously and 15 pools that have been fenced off for over 40 years at a site in Sacramento County. We paired pools based on abiotic characteristics (size, shape, slope, soil type) to minimize natural variation. We sampled vegetation and water depth using Solinst level loggers. We found that plant diversity and average hydroperiod was significantly higher in the grazed pools. We are currently measuring groundwater connectivity and upland inputs in order to compare the relative strength of livestock grazing as a driver of hydroperiod to these other drivers.

Traveling ionospheric disturbances observed by Kharkiv and Millstone Hill incoherent scatter radars near vernal equinox and summer solstice

NASA Astrophysics Data System (ADS)

Panasenko, Sergii V.; Goncharenko, Larisa P.; Erickson, Philip J.; Aksonova, Kateryna D.; Domnin, Igor F.

2018-07-01

We present the results of comparative study of traveling ionospheric disturbances (TIDs) obtained at middle latitudes of different longitudinal sectors during two coordinated observational campaigns. The joint measurements were conducted near the vernal equinox and summer solstice in 2016 using Kharkiv (49.6 N, 36.3 E) and Millstone Hill (42.6 N, 288.5 E) incoherent scatter radars. The same methods and software were used for analysis of both data sets to ensure consistency. We found that TIDs with periods of 40-80 min are observed during all measurements and concentrated predominantly near the sunrise and sunset terminators over both sites. There is no obvious relationship between the observed wave processes and variations in the auroral electrojet. Absolute and relative amplitudes, time of appearance, durations and phase differences of TIDs show strong height and seasonal variability. Relative amplitudes are substantially greater over Millstone Hill, whereas higher absolute amplitudes are observed over Kharkiv. During the summer solstice, the overall wave activity is smaller than during vernal equinox. Additional joint observations are needed to identify the seasonal and longitudinal dependences of TID characteristics.

Molecular analysis of FRIGIDA, a major determinant of natural variation in Arabidopsis flowering time.

PubMed

Johanson, U; West, J; Lister, C; Michaels, S; Amasino, R; Dean, C

2000-10-13

Vernalization, the acceleration of flowering by a long period of cold temperature, ensures that many plants overwinter vegetatively and flower in spring. In Arabidopsis, allelic variation at the FRIGIDA (FRI) locus is a major determinant of natural variation in flowering time. Dominant alleles of FRI confer late flowering, which is reversed to earliness by vernalization. We cloned FRI and analyzed the molecular basis of the allelic variation. Most of the early-flowering ecotypes analyzed carry FRI alleles containing one of two different deletions that disrupt the open reading frame. Loss-of-function mutations at FRI have thus provided the basis for the evolution of many early-flowering ecotypes.

Genetic Architecture of Flowering-Time Variation in Brachypodium distachyon

DOE Office of Scientific and Technical Information (OSTI.GOV)

Woods, Daniel P.; Bednarek, Ryland; Bouché, Frédéric

The transition to reproductive development is a crucial step in the plant life cycle, and the timing of this transition is an important factor in crop yields. Here, we report new insights into the genetic control of natural variation in flowering time in Brachypodium distachyon, a nondomesticated pooid grass closely related to cereals such as wheat (Triticum spp.) and barley (Hordeum vulgare L.). A recombinant inbred line population derived from a cross between the rapid-flowering accession Bd21 and the delayed-flowering accession Bd1-1 were grown in a variety of environmental conditions to enable exploration of the genetic architecture of flowering time.more » A genotyping-by-sequencing approach was used to develop SNP markers for genetic map construction, and quantitative trait loci (QTLs) that control differences in flowering time were identified. Many of the flowering-time QTLs are detected across a range of photoperiod and vernalization conditions, suggesting that the genetic control of flowering within this population is robust. The two major QTLs identified in undomesticated B. distachyon colocalize with VERNALIZATION1/PHYTOCHROME C and VERNALIZATION2, loci identified as flowering regulators in the domesticated crops wheat and barley. This suggests that variation in flowering time is controlled in part by a set of genes broadly conserved within pooid grasses.« less

Genetic Architecture of Flowering-Time Variation in Brachypodium distachyon

DOE PAGES

Woods, Daniel P.; Bednarek, Ryland; Bouché, Frédéric; ...

2016-10-14

The transition to reproductive development is a crucial step in the plant life cycle, and the timing of this transition is an important factor in crop yields. Here, we report new insights into the genetic control of natural variation in flowering time in Brachypodium distachyon, a nondomesticated pooid grass closely related to cereals such as wheat (Triticum spp.) and barley (Hordeum vulgare L.). A recombinant inbred line population derived from a cross between the rapid-flowering accession Bd21 and the delayed-flowering accession Bd1-1 were grown in a variety of environmental conditions to enable exploration of the genetic architecture of flowering time.more » A genotyping-by-sequencing approach was used to develop SNP markers for genetic map construction, and quantitative trait loci (QTLs) that control differences in flowering time were identified. Many of the flowering-time QTLs are detected across a range of photoperiod and vernalization conditions, suggesting that the genetic control of flowering within this population is robust. The two major QTLs identified in undomesticated B. distachyon colocalize with VERNALIZATION1/PHYTOCHROME C and VERNALIZATION2, loci identified as flowering regulators in the domesticated crops wheat and barley. This suggests that variation in flowering time is controlled in part by a set of genes broadly conserved within pooid grasses.« less

Vernalizing cold is registered digitally at FLC.

PubMed

Angel, Andrew; Song, Jie; Yang, Hongchun; Questa, Julia I; Dean, Caroline; Howard, Martin

2015-03-31

A fundamental property of many organisms is an ability to sense, evaluate, and respond to environmental signals. In some situations, generation of an appropriate response requires long-term information storage. A classic example is vernalization, where plants quantitatively sense long-term cold and epigenetically store this cold-exposure information to regulate flowering time. In Arabidopsis thaliana, stable epigenetic memory of cold is digital: following long-term cold exposure, cells respond autonomously in an all-or-nothing fashion, with the fraction of cells that stably silence the floral repressor flowering locus C (FLC) increasing with the cold exposure duration. However, during cold exposure itself it is unknown whether vernalizing cold is registered at FLC in individual cells in an all-or-nothing (digital) manner or is continuously varying (analog). Using mathematical modeling, we found that analog registration of cold temperature is problematic due to impaired analog-to-digital conversion into stable memory. This disadvantage is particularly acute when responding to short cold periods, but is absent when cold temperatures are registered digitally at FLC. We tested this prediction experimentally, exposing plants to short periods of cold interrupted with even shorter warm breaks. For FLC expression, we found that the system responds similarly to both interrupted and uninterrupted cold, arguing for a digital mechanism integrating long-term temperature exposure.

Vernalizing cold is registered digitally at FLC

PubMed Central

Angel, Andrew; Song, Jie; Yang, Hongchun; Questa, Julia I.; Dean, Caroline; Howard, Martin

2015-01-01

A fundamental property of many organisms is an ability to sense, evaluate, and respond to environmental signals. In some situations, generation of an appropriate response requires long-term information storage. A classic example is vernalization, where plants quantitatively sense long-term cold and epigenetically store this cold-exposure information to regulate flowering time. In Arabidopsis thaliana, stable epigenetic memory of cold is digital: following long-term cold exposure, cells respond autonomously in an all-or-nothing fashion, with the fraction of cells that stably silence the floral repressor FLOWERING LOCUS C (FLC) increasing with the cold exposure duration. However, during cold exposure itself it is unknown whether vernalizing cold is registered at FLC in individual cells in an all-or-nothing (digital) manner or is continuously varying (analog). Using mathematical modeling, we found that analog registration of cold temperature is problematic due to impaired analog-to-digital conversion into stable memory. This disadvantage is particularly acute when responding to short cold periods, but is absent when cold temperatures are registered digitally at FLC. We tested this prediction experimentally, exposing plants to short periods of cold interrupted with even shorter warm breaks. For FLC expression, we found that the system responds similarly to both interrupted and uninterrupted cold, arguing for a digital mechanism integrating long-term temperature exposure. PMID:25775579

Tuning growth cycles of Brassica crops via natural antisense transcripts of BrFLC.

PubMed

Li, Xiaorong; Zhang, Shaofeng; Bai, Jinjuan; He, Yuke

2016-03-01

Several oilseed and vegetable crops of Brassica are biennials that require a prolonged winter cold for flowering, a process called vernalization. FLOWERING LOCUS C (FLC) is a central repressor of flowering. Here, we report that the overexpression of natural antisense transcripts (NATs) of Brassica rapa FLC (BrFLC) greatly shortens plant growth cycles. In rapid-, medium- and slow-cycling crop types, there are four copies of the BrFLC genes, which show extensive variation in sequences and expression levels. In Bre, a biennial crop type that requires vernalization, five NATs derived from the BrFLC2 locus are rapidly induced under cold conditions, while all four BrFLC genes are gradually down-regulated. The transgenic Bre lines overexpressing a long NAT of BrFLC2 do not require vernalization, resulting in a gradient of shortened growth cycles. Among them, a subset of lines both flower and set seeds as early as Yellow sarson, an annual crop type in which all four BrFLC genes have non-sense mutations and are nonfunctional in flowering repression. Our results demonstrate that the growth cycles of biennial crops of Brassica can be altered by changing the expression levels of BrFLC2 NATs. Thus, BrFLC2 NATs and their transgenic lines are useful for the genetic manipulation of crop growth cycles. © 2015 Society for Experimental Biology, Association of Applied Biologists and John Wiley & Sons Ltd.

Copy Number Variation Affecting the Photoperiod-B1 and Vernalization-A1 Genes Is Associated with Altered Flowering Time in Wheat (Triticum aestivum)

PubMed Central

Isaac, Peter; Laurie, David A.

2012-01-01

The timing of flowering during the year is an important adaptive character affecting reproductive success in plants and is critical to crop yield. Flowering time has been extensively manipulated in crops such as wheat (Triticum aestivum L.) during domestication, and this enables them to grow productively in a wide range of environments. Several major genes controlling flowering time have been identified in wheat with mutant alleles having sequence changes such as insertions, deletions or point mutations. We investigated genetic variants in commercial varieties of wheat that regulate flowering by altering photoperiod response (Ppd-B1 alleles) or vernalization requirement (Vrn-A1 alleles) and for which no candidate mutation was found within the gene sequence. Genetic and genomic approaches showed that in both cases alleles conferring altered flowering time had an increased copy number of the gene and altered gene expression. Alleles with an increased copy number of Ppd-B1 confer an early flowering day neutral phenotype and have arisen independently at least twice. Plants with an increased copy number of Vrn-A1 have an increased requirement for vernalization so that longer periods of cold are required to potentiate flowering. The results suggest that copy number variation (CNV) plays a significant role in wheat adaptation. PMID:22457747

Hydric soils in a southeastern Oregon vernal pool

USGS Publications Warehouse

Clausnitzer, D.; Huddleston, J.H.; Horn, E.; Keller, Michael; Leet, C.

2003-01-01

Vernal pools on the High Lava Plain of the northern Great Basin become ponded in most years, but their soils exhibit weak redoximorphic features indicative of hydric conditions. We studied the hydrology, temperature, redox potentials, soil chemistry, and soil morphology of a vernal pool to determine if the soils are hydric, and to evaluate hydric soil field indicators. We collected data for 3 yr from piezometers, Pt electrodes, and thermocouples. Soil and water samples were analyzed for pH, organic C, and extractable Fe and Mn. Soils were ponded from January through April or May, but subsurface saturation was never detected. Soil temperatures 50 cm below the surface rose above 5??C by March. Clayey Bt horizons perched water and limited saturation to the upper 10 cm. Redox potentials at a 5-cm depth were often between 200 and 300 mV, indicating anaerobic conditions, but producing soluble Fe2+ concentrations <1 mg L-1. Extractable soil Fe contents indicated Fe depletion from pool surface horizons and accumulation at or near the upper Bt1 horizon. Depletions and concentrations did not satisfy the criteria of any current hydric soil indicators. We recommend development of new indicators based on acceptance of fewer, less distinct redox concentrations for recognition of a depleted A horizon, and on presence of a thin zone containing redox concentrations located in the upper part of the near-surface perching horizon.

Expression, purification and preliminary X-ray diffraction studies of VERNALIZATION1208–341 from Arabidopsis thaliana

PubMed Central

King, Gordon; Hill, Justine M.; Martin, Jennifer L.; Mylne, Joshua S.

2009-01-01

VERNALIZATION1 (VRN1) is required in the model plant Arabidopsis thaliana for the epigenetic suppression of the floral repressor FLC by prolonged cold treatment. Stable suppression of FLC accelerates flowering, a physiological process known as vernalization. VRN1 is a 341-residue DNA-binding protein that contains two plant-specific B3 domains (B3a and B3b), a putative nuclear localization sequence (NLS) and two putative PEST domains. VRN1208–341 includes the second B3 domain and a region upstream that is highly conserved in the VRN1 orthologues of other dicotyledonous plants. VRN1208–341 was crystallized by the hanging-drop method in 0.05 M sodium acetate pH 6.0 containing 1.0 M NaCl and 18%(w/v) PEG 3350. Preliminary X-ray diffraction data analysis revealed that the VRN1208–341 crystal diffracted to 2.1 Å and belonged to space group C2, with unit-cell parameters a = 105.2, b = 47.9, c = 61.2 Å, α = 90.0, β = 115.4, γ = 90.0°. Assuming that two molecules occupy the asymmetric unit, a Matthews coefficient of 2.05 Å3 Da−1 and a solvent content of 40.1% were calculated. PMID:19255487

The potential use of tar sand bitumen as paving asphalt

DOE Office of Scientific and Technical Information (OSTI.GOV)

Petersen, J.C.

1988-01-01

In this paper several research reports describing the preparation of potential paving asphalts from tar sand bitumen are reviewed and the results of the studies compared. The tar sand asphalts described in the studies were prepared from 1) hot water-recovered bitumen from deposits near San Luis Obispo, California (Edna deposits), and deposits near Vernal and Sunnyside, Utah; and 2) bitumen recovered from the Northwest Asphalt Ridge deposits near Vernal, Utah, by both in situ steamflood and in situ combustion recovery processes. Important properties of the tar sand asphalts compare favorably with those of specification petroleum asphalts. Laboratory data suggest thatmore » some tar sand asphalts may have superior aging characteristics and produce more water-resistant paving mixtures than typical petroleum asphalts.« less

76 FR 23787 - Ashley Resource Advisory Committee

Federal Register 2010, 2011, 2012, 2013, 2014

2011-04-28

... Resource Advisory Committee AGENCY: Forest Service, USDA. ACTION: Notice of meeting. SUMMARY: The Ashley Resource Advisory Committee will meet in Vernal, Utah. The committee is meeting as authorized under the...

78 FR 54658 - Allergenic Products Advisory Committee; Notice of Meeting

Federal Register 2010, 2011, 2012, 2013, 2014

2013-09-05

... Vernal Grass, Perennial Ryegrass, Timothy Grass, Orchard Grass, and Kentucky Bluegrass Mixed Pollens... Grastek, a Timothy Grass Pollen Allergen Extract tablet for sublingual use, manufactured by Merck. FDA...

Cell wall composition and biomass recalcitrance differences within a genotypically diverse set of Brachypodium distachyon inbred lines

DOE PAGES

Cass, Cynthia L.; Lavell, Anastasiya A.; Santoro, Nicholas; ...

2016-05-26

Brachypodium distachyon ( Brachypodium) has emerged as a useful model system for studying traits unique to graminaceous species including bioenergy crop grasses owing to its amenability to laboratory experimentation and the availability of extensive genetic and germplasm resources. Considerable natural variation has been uncovered for a variety of traits including flowering time, vernalization responsiveness, and above-ground growth characteristics. However, cell wall composition differences remain underexplored. Therefore, we assessed cell wall-related traits relevant to biomass conversion to biofuels in seven Brachypodium inbred lines that were chosen based on their high level of genotypic diversity as well as available genome sequences andmore » recombinant inbred line (RIL) populations. Senesced stems plus leaf sheaths from these lines exhibited significant differences in acetyl bromide soluble lignin (ABSL), cell wall polysaccharide-derived sugars, hydroxycinnamates content, and syringyl:guaiacyl:p-hydroxyphenyl (S:G:H) lignin ratios. Free glucose, sucrose, and starch content also differed significantly in senesced stems, as did the amounts of sugars released from cell wall polysaccharides (digestibility) upon exposure to a panel of thermochemical pretreatments followed by hydrolytic enzymatic digestion. Correlations were identified between inbred line lignin compositions and plant growth characteristics such as biomass accumulation and heading date (HD), and between amounts of cell wall polysaccharides and biomass digestibility. Finally, stem cell wall p-coumarate and ferulate contents and free-sugars content changed significantly with increased duration of vernalization for some inbred lines. Taken together, these results show that Brachypodium displays substantial phenotypic variation with respect to cell wall composition and biomass digestibility, with some compositional differences correlating with growth characteristics. Moreover, besides influencing HD and biomass accumulation, vernalization was found to affect cell wall composition and free sugars accumulation in some Brachypodium inbred lines, suggesting genetic differences in how vernalization affects carbon flux to polysaccharides. Lastly, the availability of related RIL populations will allow for the genetic and molecular dissection of this natural variation, the knowledge of which may inform ways to genetically improve bioenergy crop grasses.« less

Cell wall composition and biomass recalcitrance differences within a genotypically diverse set of Brachypodium distachyon inbred lines

DOE Office of Scientific and Technical Information (OSTI.GOV)

Cass, Cynthia L.; Lavell, Anastasiya A.; Santoro, Nicholas

Brachypodium distachyon ( Brachypodium) has emerged as a useful model system for studying traits unique to graminaceous species including bioenergy crop grasses owing to its amenability to laboratory experimentation and the availability of extensive genetic and germplasm resources. Considerable natural variation has been uncovered for a variety of traits including flowering time, vernalization responsiveness, and above-ground growth characteristics. However, cell wall composition differences remain underexplored. Therefore, we assessed cell wall-related traits relevant to biomass conversion to biofuels in seven Brachypodium inbred lines that were chosen based on their high level of genotypic diversity as well as available genome sequences andmore » recombinant inbred line (RIL) populations. Senesced stems plus leaf sheaths from these lines exhibited significant differences in acetyl bromide soluble lignin (ABSL), cell wall polysaccharide-derived sugars, hydroxycinnamates content, and syringyl:guaiacyl:p-hydroxyphenyl (S:G:H) lignin ratios. Free glucose, sucrose, and starch content also differed significantly in senesced stems, as did the amounts of sugars released from cell wall polysaccharides (digestibility) upon exposure to a panel of thermochemical pretreatments followed by hydrolytic enzymatic digestion. Correlations were identified between inbred line lignin compositions and plant growth characteristics such as biomass accumulation and heading date (HD), and between amounts of cell wall polysaccharides and biomass digestibility. Finally, stem cell wall p-coumarate and ferulate contents and free-sugars content changed significantly with increased duration of vernalization for some inbred lines. Taken together, these results show that Brachypodium displays substantial phenotypic variation with respect to cell wall composition and biomass digestibility, with some compositional differences correlating with growth characteristics. Moreover, besides influencing HD and biomass accumulation, vernalization was found to affect cell wall composition and free sugars accumulation in some Brachypodium inbred lines, suggesting genetic differences in how vernalization affects carbon flux to polysaccharides. Lastly, the availability of related RIL populations will allow for the genetic and molecular dissection of this natural variation, the knowledge of which may inform ways to genetically improve bioenergy crop grasses.« less

78 FR 66011 - Allergenic Products Advisory Committee; Notice of Meeting

Federal Register 2010, 2011, 2012, 2013, 2014

2013-11-04

... vernal, orchard, perennial rye, Timothy, and Kentucky bluegrass mixed pollens allergen extract tablet for... to discuss and make recommendations on the safety and efficacy of Grastek, a Timothy grass pollen...

Monitoring the vernal advancement and retrogradation (green wave effect) of natural vegetation

NASA Technical Reports Server (NTRS)

Rouse, J. W., Jr. (Principal Investigator)

1973-01-01

The author has identified the following significant results. Continued evaluation of autumnal phase and early vernal phase data indicate that the quality of ERTS-1 imagery over the Great Plains Corridor test sites are adequate to show relatively small temporal changes in the condition and quantity of vegetation at the several test sites. Vegetation changes measured from August through April are observable in reflectance changes recorded by ERTS-1. Vegetation changes due to grazing treatment and environmental conditions at the test sites are being monitored with ground data and ERTS-1 data, and appear adequate to complete all phases of the Great Plains Corridor investigation. NASA high flight aerial photography proved to be an indispensable tool for locating the Great Plains Corridor test sites on the computer derived grey maps of ERTS-1 digital data.

The occurrence of glyphosate, atrazine, and other pesticides in vernal pools and adjacent streams in Washington, DC, Maryland, Iowa, and Wyoming, 2005-2006

USGS Publications Warehouse

Battaglin, William A.; Rice, Karen C.; Focazio, Michael J.; Salmons, Sue; Barry, Robert X.

2009-01-01

Vernal pools are sensitive environments that provide critical habitat for many species, including amphibians. These small water bodies are not always protected by pesticide label requirements for no-spray buffer zones, and the occurrence of pesticides in them is poorly documented. In this study, we investigated the occurrence of glyphosate, its primary degradation product aminomethylphosphonic acid, and additional pesticides in vernal pools and adjacent flowing waters. Most sampling sites were chosen to be in areas where glyphosate was being used either in production agriculture or for nonindigenous plant control. The four site locations were in otherwise protected areas (e.g., in a National Park). When possible, water samples were collected both before and after glyphosate application in 2005 and 2006. Twenty-eight pesticides or pesticide degradation products were detected in the study, and as many as 11 were identified in individual samples. Atrazine was detected most frequently and concentrations exceeded the freshwater aquatic life standard of 1.8 micrograms per liter (μg/l) in samples from Rands Ditch and Browns Ditch in DeSoto National Wildlife Refuge. Glyphosate was measured at the highest concentration (328 μg/l) in a sample from Riley Spring Pond in Rock Creek National Park. This concentration exceeded the freshwater aquatic life standard for glyphosate of 65 μg/l. Aminomethylphosphonic acid, triclopyr, and nicosulfuron also were detected at concentrations greater than 3.0 μg/l.

Corneal Complications And Visual Impairment In Vernal Keratoconjunctivitis Patients.

PubMed

Arif, Abdus Salam; Aaqil, Bushra; Siddiqui, Afsheen; Nazneen, Zainab; Farooq, Umer

2017-01-01

Vernal kerato-conjunctivitis (VKC) is an infrequent but serious form of allergic conjunctivitis common in warm and humid areas where air is rich in allergens. It affects both eyes asymmetrically. Although VKC is a self-limiting disease but visions affecting corneal complications influence the quality of life in school children. The aim of this study was to list the corneal complications due to this condition and to find out the extent of visual impairment among VKC patients. This cross-sectional study was conducted in the department of Ophthalmology, Benazir Bhutto Shaheed Hospital on 290 eyes of diagnosed cases of VKC. The diagnosis of VKC was made on the basis of history and examination. Visual acuity was recorded using Snellen's notation and visual impairment was classified according to World Health Organization classification for visual disabilities. The mean age of presentation was 10.83±6.13 years. There were 207 (71.4%) males and 83 (28.6%) females. Corneal scarring was observed in 59 (20.3%) eyes. Keratoconus was found to be in 17 (5.9%) eyes. Shield ulcer was detected in 09 (3.1%) eyes while 07 (2.4%) eyes had corneal neovascularization. Majority of the patients with visual loss had corneal scarring and the complication that led to severe visual loss in most of the eyes was Keratoconus. Vernal kerato-conjunctivitis in the presence of corneal complications is a sight threatening disease and can lead to severe visual impairment.

Conjunctivitis and Total IgE in Lacrimal Fluid: Lacrytest Screening

PubMed Central

Monzón, Susana; Arrondo, Elena; Bartra, Joan; Torres, Ferran; Basagaña, María; San Miguel, M. del Mar; Alonso, Rosario; Cisteró-Bahima, Anna

2009-01-01

Total tear IgE has been considered to play an important role in allergic conjunctivitis, and measurement has been considered useful for diagnosis. The aim of this study was to ascertain whether Lacrytest®, a new commercialised method to detect IgE levels in lacrimal fluid, could constitute a screening test for the diagnosis of allergic conjunctivitis. This was a cross-sectional study. Patients with seasonal and perennial allergic conjunctivitis, vernal keratoconjunctivitis and a control group were included. Clinical history, ophthalmic examination, skin prick test and conjunctival provocation test were obtained. Lacrytest® was later performed in all groups. Fifty-four patients were enrolled: thirty with IgE-mediated conjunctivitis and, nine with vernal keratoconjunctivitis and fifteen controls. Lacrytest® was negative in all controls, positive in 20% of the IgE-mediated conjunctivitis group and in 88.9% of the vernal keratoconjunctivitis group. Global statistically-significant differences were found among the three groups (P = .003). Sensitivity of the test in the IgE-mediated conjunctivitis group was 20%, specificity 100%, positive predictive value 100%, and negative predictive value 38.46%, while in VKC sensitivity was 88.88%, specificity 100%, positive predictive value 100%, and negative predictive value 93.75%. Our data confirm that this test is not useful for screening allergic conjunctivitis. Lacrytest®, while not providing any useful information to an allergist, could be helpful for ophthalmologists to confirm an IgE-mediated or VKC conjunctivitis. PMID:20975798

76 FR 63910 - Intent To Prepare a Draft Environmental Impact Statement for the Proposed Excelsior Estates...

Federal Register 2010, 2011, 2012, 2013, 2014

2011-10-14

... (Branchinecta lynchi), vernal pool tadpole shrimp (Lepidurus packardi), Sacramento Orcutt grass (Orcuttia viscida) and slender Orcutt grass (Orcuttia tenuis). The EIS will include alternatives to the Proposed...

Modeling the effects of isolated wetlands on downstream hydrology at the watershed scale

EPA Science Inventory

Geographically-isolated wetlands, wetlands completely surrounded by uplands (e.g., prairie potholes, vernal pools and cypress domes), are depressional landscape features. They provide numerous ecological functions including biogeochemical cycling and water storage and recharge an...

77 FR 45330 - Ashley Resource Advisory Committee

Federal Register 2010, 2011, 2012, 2013, 2014

2012-07-31

... DEPARTMENT OF AGRICULTURE Forest Service Ashley Resource Advisory Committee AGENCY: Forest Service, USDA. ACTION: Notice of meeting. SUMMARY: The Ashley Resource Advisory Committee will meet in Vernal, Utah. The committee is meeting as authorized under the Secure Rural Schools and Community Self...

76 FR 8333 - Ashley Resource Advisory Committee

Federal Register 2010, 2011, 2012, 2013, 2014

2011-02-14

... DEPARTMENT OF AGRICULTURE Forest Service Ashley Resource Advisory Committee AGENCY: Forest Service, USDA. ACTION: Notice of meeting. SUMMARY: The Ashley Resource Advisory Committee will meet in Vernal, Utah. The committee is meeting as authorized under the Secure Rural Schools and Community Self...

77 FR 53842 - Ashley Resource Advisory Committee

Federal Register 2010, 2011, 2012, 2013, 2014

2012-09-04

... DEPARTMENT OF AGRICULTURE Forest Service Ashley Resource Advisory Committee AGENCY: Forest Service, USDA. ACTION: Notice of meeting. SUMMARY: The Ashley Resource Advisory Committee will meet in Vernal, Utah. The committee is meeting as authorized under the Secure Rural Schools and Community Self...

75 FR 70712 - Ashley Resource Advisory Committee

Federal Register 2010, 2011, 2012, 2013, 2014

2010-11-18

... DEPARTMENT OF AGRICULTURE Forest Service Ashley Resource Advisory Committee AGENCY: Forest Service, USDA. ACTION: Notice of meeting. SUMMARY: The Ashley Resource Advisory Committee will meet in Vernal, Utah. The committee is meeting as authorized under the Secure Rural Schools and Community Self...

78 FR 70531 - Ashley Resource Advisory Committee

Federal Register 2010, 2011, 2012, 2013, 2014

2013-11-26

... DEPARTMENT OF AGRICULTURE Forest Service Ashley Resource Advisory Committee AGENCY: Forest Service, USDA. ACTION: Notice of meeting cancellation. SUMMARY: The Ashley Resource Advisory Committee (RAC) meeting scheduled on the date below is cancelled. The meeting was scheduled to meet in Vernal, Utah. The...

76 FR 37773 - Ashley Resource Advisory Committee

Federal Register 2010, 2011, 2012, 2013, 2014

2011-06-28

... DEPARTMENT OF AGRICULTURE Forest Service Ashley Resource Advisory Committee AGENCY: Forest Service. ACTION: Notice of meeting. SUMMARY: The Ashley Resource Advisory Committee will meet in Vernal, Utah. The committee is meeting as authorized under the Secure Rural Schools and Community Self-Determination Act (Pub...

Intracellular IL-4, IL-5, and IFN-γ as the main characteristic of CD4+CD30+ T cells after allergen stimulation in patients with vernal keratoconjunctivitis

PubMed Central

Magaña, Diana; Aguilar, Gustavo; Linares, Marisela; Ayala-Balboa, Julio; Santacruz, Concepción; Chávez, Raúl; Estrada-Parra, Sergio; Garfias, Yonathan; Lascurain, Ricardo; Jiménez-Martínez, Maria C.

2015-01-01

Background Vernal keratoconjunctivitis (VKC) is a severe form of allergic conjunctivitis, in which inflammatory infiltrates of the conjunctiva are characterized by CD3+ and CD30+ cells. Until today, the functional involvement of CD30+ T cells in VKC was unclear. Our aim was to evaluate the functional characteristics of CD30+ T cells after allergen stimulation in peripheral blood mononuclear cells obtained from patients with VKC. Methods Seventeen consecutive patients at the Institute of Ophthalmology with active forms of VKC were included. Results After allergen stimulation, we observed the frequency of CD30+ T cells increased compared with non-stimulated cells (p<0.0001). The CD30+ T cells responded to the specific allergen-inducing expression of intracellular interleukin-4 (IL-4), IL-5, and interferon-gamma (IFN-γ) compared with the CD30- T cells (p<0.0001). Increased early secretion of soluble CD30 was observed in the supernatant of the cultured cells from patients with keratoconjunctivitis, compared with healthy controls (p=0.03). Blockage with IL-4 significantly diminished CD30 frequency in the allergen-stimulated cells. Conclusions Our results suggest that after allergenic stimulation, CD4+CD30+ cells are the most important source of IL-4, IL-5, and IFN-γ. IL-4 acts as an activation loop that increases CD30 expression on T cells after specific stimulation. These findings suggest that CD4+CD30+ T cells are effector cells and play a significant role in the immune pathogenic response in patients with vernal keratoconjunctivitis. PMID:25999672

The role of BoFLC2 in cauliflower (Brassica oleracea var. botrytis L.) reproductive development.

PubMed

Ridge, Stephen; Brown, Philip H; Hecht, Valérie; Driessen, Ronald G; Weller, James L

2015-01-01

In agricultural species that are sexually propagated or whose marketable organ is a reproductive structure, management of the flowering process is critical. Inflorescence development in cauliflower is particularly complex, presenting unique challenges for those seeking to predict and manage flowering time. In this study, an integrated physiological and molecular approach was used to clarify the environmental control of cauliflower reproductive development at the molecular level. A functional allele of BoFLC2 was identified for the first time in an annual brassica, along with an allele disrupted by a frameshift mutation (boflc2). In a segregating F₂ population derived from a cross between late-flowering (BoFLC2) and early-flowering (boflc2) lines, this gene behaved in a dosage-dependent manner and accounted for up to 65% of flowering time variation. Transcription of BoFLC genes was reduced by vernalization, with the floral integrator BoFT responding inversely. Overall expression of BoFT was significantly higher in early-flowering boflc2 lines, supporting the idea that BoFLC2 plays a key role in maintaining the vegetative state. A homologue of Arabidopsis VIN3 was isolated for the first time in a brassica crop species and was up-regulated by two days of vernalization, in contrast to findings in Arabidopsis where prolonged exposure to cold was required to elicit up-regulation. The correlations observed between gene expression and flowering time in controlled-environment experiments were validated with gene expression analyses of cauliflowers grown outdoors under 'natural' vernalizing conditions, indicating potential for transcript levels of flowering genes to form the basis of predictive assays for curd initiation and flowering time. © The Author 2014. Published by Oxford University Press on behalf of the Society for Experimental Biology.

A Novel Retrotransposon Inserted in the Dominant Vrn-B1 Allele Confers Spring Growth Habit in Tetraploid Wheat (Triticum turgidum L.).

PubMed

Chu, C-G; Tan, C T; Yu, G-T; Zhong, S; Xu, S S; Yan, L

2011-12-01

Vernalization genes determine winter/spring growth habit in temperate cereals and play important roles in plant development and environmental adaptation. In wheat (Triticum L. sp.), it was previously shown that allelic variation in the vernalization gene VRN1 was due to deletions or insertions either in the promoter or in the first intron. Here, we report a novel Vrn-B1 allele that has a retrotransposon in its promoter conferring spring growth habit. The VRN-B1 gene was mapped in a doubled haploid population that segregated for winter-spring growth habit but was derived from two spring tetraploid wheat genotypes, the durum wheat (T. turgidum subsp. durum) variety 'Lebsock' and T. turgidum subsp. carthlicum accession PI 94749. Genetic analysis revealed that Lebsock carried the dominant Vrn-A1 and recessive vrn-B1 alleles, whereas PI 94749 had the recessive vrn-A1 and dominant Vrn-B1 alleles. The Vrn-A1 allele in Lebsock was the same as the Vrn-A1c allele previously reported in hexaploid wheat. No differences existed between the vrn-B1 and Vrn-B1 alleles, except that a 5463-bp insertion was detected in the 5'-UTR region of the Vrn-B1 allele. This insertion was a novel retrotransposon (designated as retrotrans_VRN), which was flanked by a 5-bp target site duplication and contained primer binding site and polypurine tract motifs, a 325-bp long terminal repeat, and an open reading frame encoding 1231 amino acids. The insertion of retrotrans_VRN resulted in expression of Vrn-B1 without vernalization. Retrotrans_VRN is prevalent among T. turgidum subsp. carthlicum accessions, less prevalent among T. turgidum subsp. dicoccum accessions, and rarely found in other tetraploid wheat subspecies.

The role of BoFLC2 in cauliflower (Brassica oleracea var. botrytis L.) reproductive development

PubMed Central

Ridge, Stephen; Brown, Philip H.; Hecht, Valérie; Driessen, Ronald G.; Weller, James L.

2015-01-01

In agricultural species that are sexually propagated or whose marketable organ is a reproductive structure, management of the flowering process is critical. Inflorescence development in cauliflower is particularly complex, presenting unique challenges for those seeking to predict and manage flowering time. In this study, an integrated physiological and molecular approach was used to clarify the environmental control of cauliflower reproductive development at the molecular level. A functional allele of BoFLC2 was identified for the first time in an annual brassica, along with an allele disrupted by a frameshift mutation (boflc2). In a segregating F2 population derived from a cross between late-flowering (BoFLC2) and early-flowering (boflc2) lines, this gene behaved in a dosage-dependent manner and accounted for up to 65% of flowering time variation. Transcription of BoFLC genes was reduced by vernalization, with the floral integrator BoFT responding inversely. Overall expression of BoFT was significantly higher in early-flowering boflc2 lines, supporting the idea that BoFLC2 plays a key role in maintaining the vegetative state. A homologue of Arabidopsis VIN3 was isolated for the first time in a brassica crop species and was up-regulated by two days of vernalization, in contrast to findings in Arabidopsis where prolonged exposure to cold was required to elicit up-regulation. The correlations observed between gene expression and flowering time in controlled-environment experiments were validated with gene expression analyses of cauliflowers grown outdoors under ‘natural’ vernalizing conditions, indicating potential for transcript levels of flowering genes to form the basis of predictive assays for curd initiation and flowering time. PMID:25355864

Water-quality and amphibian population data for Maryland, Washington, D.C., and Virginia, 2001-2004

USGS Publications Warehouse

Rice, K.C.; Jung, R.E.

2004-01-01

Data on the chemical composition of water and on amphibian populations were collected at least annually from vernal pool and stream sites in Maryland, Washington, D.C., and Virginia, from 2001 through 2004. The data were collected as part of long-term monitoring projects of the Northeast Region of the Amphibian Research and Monitoring Initiative (ARMI) of the U.S. Geological Survey. Water samples were analyzed for temperature, specific conductance, pH, dissolved-oxygen concentration, acid-neutralizing capacity, and concentrations of total Kjeldahl nitrogen and total phosphorus; in 2004, samples also were analyzed for nitrite plus nitrate concentrations and total nitrogen concentrations. Field and laboratory analytical results of water samples and quality-assurance information are presented. Amphibian population data include the presence of amphibian species and the maximum number of egg masses of wood frogs and spotted salamanders at vernal pools, and counts of amphibians made during stream transect and stream quadrat surveys.

Vernal keratoconjunctivitis in school children in Rwanda and its association with socio-economic status: a population-based survey.

PubMed

Smedt, Stefan De; Nkurikiye, John; Fonteyne, Yannick; Hogewoning, Arjan; Esbroeck, Marjan Van; Bacquer, Dirk De; Tuft, Stephen; Gilbert, Clare; Delanghe, Joris; Kestelyn, Philippe

2011-10-01

Vernal keratoconjunctivitis (VKC) is an allergic eye disease and an important cause of hospital referral among children in Africa and Asia. Hospital-based studies have suggested a role for parasites in its pathogenesis. To determine the prevalence and risk factors for VKC in Central Africa, we conducted a nested population-based case control study in Rwanda, involving randomly selected primary schools from different environments (rural/urban) and climate. A prevalence of VKC of 4.0% (95% confidence interval 3.3-4.7%) was found among 3,041 children studied (participation rate 94.7%). The intestinal parasitic burden was not related to VKC. Besides hot dry climate (odds ratio [OR] = 1.5, P = 0.05) and male gender (OR = 1.7, P = 0.005), multivariate analysis identified higher economic status as a risk for VKC (OR = 1.4, P = 0.005). The effect on VKC of higher economic status appears not to act through differences in parasitic intestinal load.

Vernal Keratoconjunctivitis in School Children in Rwanda and Its Association with Socio-Economic Status: A Population-Based Survey

PubMed Central

Smedt, Stefan De; Nkurikiye, John; Fonteyne, Yannick; Hogewoning, Arjan; Esbroeck, Marjan Van; Bacquer, Dirk De; Tuft, Stephen; Gilbert, Clare; Delanghe, Joris; Kestelyn, Philippe

2011-01-01

Vernal keratoconjunctivitis (VKC) is an allergic eye disease and an important cause of hospital referral among children in Africa and Asia. Hospital-based studies have suggested a role for parasites in its pathogenesis. To determine the prevalence and risk factors for VKC in Central Africa, we conducted a nested population-based case control study in Rwanda, involving randomly selected primary schools from different environments (rural/urban) and climate. A prevalence of VKC of 4.0% (95% confidence interval 3.3–4.7%) was found among 3,041 children studied (participation rate 94.7%). The intestinal parasitic burden was not related to VKC. Besides hot dry climate (odds ratio [OR] = 1.5, P = 0.05) and male gender (OR = 1.7, P = 0.005), multivariate analysis identified higher economic status as a risk for VKC (OR = 1.4, P = 0.005). The effect on VKC of higher economic status appears not to act through differences in parasitic intestinal load. PMID:21976577

Population Change, Community Viability, and Migration Intentions in Selected Utah Communities. Research Report 51.

ERIC Educational Resources Information Center

Kim, Yun; And Others

The first phase of a longitudinal research project, "Assessing Rural Communities' Viability and Associated Factors Under Conditions of Population Change," was conducted in 1975 in eight Utah communities (Panguitch, Richfield, Salina, Delta, Moab, Duchesne, Roosevelt, and Vernal) to provide useful information for planners, researchers,…

Genes affecting heading date in cocksfoot (Dactylis glomerata)

USDA-ARS?s Scientific Manuscript database

Several genes cause well known effects on heading date in cool-season forages: Vrn1, Constans, and FloweringTime. Vrn1 is a MADs box transcription factor that is induced upon vernalization and necessary for flowering. Constans genes are induced upon long days in cool-season grasses and induce exp...

The Effects of Temperature, Photoperiod, and Vernalization on Regrowth and Flowering Competence in Euphorbia Esula (Euphorbiaceae) Crown Buds

USDA-ARS?s Scientific Manuscript database

The herbaceous perennial weed Euphorbia esula (Euphorbiaceae) reproduces by vegetative and sexual means; characteristics that are key to its persistence and survival. In this study, we examined environmental effects on dormancy and flowering under controlled conditions to further validate field obse...

Dehydration and vernalization treatments identify overlapping molecular networks impacting endodormancy maintenance in leafy spurge crown buds

USDA-ARS?s Scientific Manuscript database

Leafy spurge (Euphorbia esula L.) is an herbaceous perennial weed that reproduces vegetatively from an abundance of underground adventitious buds (UABs), which undergo well-defined phases of seasonal dormancy (para-, endo- and eco-dormancy). In this study, the effects of dehydration-stress on vegeta...

Salamander Saver

ERIC Educational Resources Information Center

Ilseman, Kelly; Hoffmann, Kristine

2016-01-01

On a spring morning in Maine, traps made of nets rise above vernal pools in a small wetland, ready to collect salamanders. The traps were designed by groups of rural and urban high school students from Maine and Massachusetts participating in the University of Maine Upward Bound Math Science Program (UBMS) at the university campus in Orono, Maine.…

Quantitative trait loci mapping of heat tolerance in a doubled haploid population of broccoli using genotyping-by-sequencing

USDA-ARS?s Scientific Manuscript database

Broccoli is a cool weather vegetable crop with a vernalization requirement to initiate and maintain floral development. Breeding for heat tolerance in broccoli has the potential to both expand viable production areas and extend the growing season. A doubled haploid (DH) population of broccoli (Bras...

INSTALLATION OF A 10-ELEMENT SHALLOW-BURIED ARRAY AT THE UINTA BASIN SEISMOLOGICAL OBSERVATORY, VERNAL, UTAH

DTIC Science & Technology

the array are buried to a depth of approximately 200 feet. This report outlines, in some detail, the installation of a buried array at the Uinta ... Basin Seismological Observatory. Major considerations in such an undertaking included the selection of the most effective array pattern and the most

WEREWOLF, a Regulator of Root Hair Pattern Formation, Controls Flowering Time through the Regulation of FT mRNA Stability1[C][W][OA

PubMed Central

Seo, Eunjoo; Yu, Jihyeon; Ryu, Kook Hui; Lee, Myeong Min; Lee, Ilha

2011-01-01

A key floral activator, FT, integrates stimuli from long-day, vernalization, and autonomous pathways and triggers flowering by directly regulating floral meristem identity genes in Arabidopsis (Arabidopsis thaliana). Since a small amount of FT transcript is sufficient for flowering, the FT level is strictly regulated by diverse genes. In this study, we show that WEREWOLF (WER), a MYB transcription factor regulating root hair pattern, is another regulator of FT. The mutant wer flowers late in long days but normal in short days and shows a weak sensitivity to vernalization, which indicates that WER controls flowering time through the photoperiod pathway. The expression and double mutant analyses showed that WER modulates FT transcript level independent of CONSTANS and FLOWERING LOCUS C. The histological analysis of WER shows that it is expressed in the epidermis of leaves, where FT is not expressed. Consistently, WER regulates not the transcription but the stability of FT mRNA. Our results reveal a novel regulatory mechanism of FT that is non cell autonomous. PMID:21653190

WEREWOLF, a regulator of root hair pattern formation, controls flowering time through the regulation of FT mRNA stability.

PubMed

Seo, Eunjoo; Yu, Jihyeon; Ryu, Kook Hui; Lee, Myeong Min; Lee, Ilha

2011-08-01

A key floral activator, FT, integrates stimuli from long-day, vernalization, and autonomous pathways and triggers flowering by directly regulating floral meristem identity genes in Arabidopsis (Arabidopsis thaliana). Since a small amount of FT transcript is sufficient for flowering, the FT level is strictly regulated by diverse genes. In this study, we show that WEREWOLF (WER), a MYB transcription factor regulating root hair pattern, is another regulator of FT. The mutant wer flowers late in long days but normal in short days and shows a weak sensitivity to vernalization, which indicates that WER controls flowering time through the photoperiod pathway. The expression and double mutant analyses showed that WER modulates FT transcript level independent of CONSTANS and FLOWERING LOCUS C. The histological analysis of WER shows that it is expressed in the epidermis of leaves, where FT is not expressed. Consistently, WER regulates not the transcription but the stability of FT mRNA. Our results reveal a novel regulatory mechanism of FT that is non cell autonomous.

Corneal complications of vernal keratoconjunctivitis.

PubMed

Solomon, Abraham

2015-10-01

Vernal keratoconjunctivitis (VKC) is a severe bilateral chronic allergic inflammatory disease of the ocular surface. In most of the cases, the disease is limited to the tarsal conjunctiva and to the limbus. However, in the more severe cases, the cornea may be involved, leading to potentially sight threatening complications. Prompt recognition of these complications is crucial in the management of VKC, which is one of the most severe ocular allergic diseases. A vicious cycle of inflammation occurs as a result of a set of reciprocal interactions between the conjunctiva and the cornea, which results in damage to the corneal epithelium and corneal stoma, and to the formation of shield ulcers and plaques, infectious keratitis, keratoconus, scarring, and limbal stem cell deficiency. These corneal complications can cause permanent decrease or loss of vision in children suffering from VKC. Corneal complications in VKC are the result of an on-going process of uncontrolled inflammation. Proper recognition of the corneal complications in VKC is crucial, as most of these can be managed or prevented by a combination of medical and surgical measures.

Structural insight into the role of VAL1 B3 domain for targeting to FLC locus in Arabidopsis thaliana.

PubMed

Wu, Baixing; Zhang, Mengmeng; Su, Shichen; Liu, Hehua; Gan, Jianhua; Ma, Jinbiao

2018-06-22

Vernalization is a pivotal stage for some plants involving many epigenetic changes during cold exposure. In Arabidopsis, an essential step in vernalization for further flowering is successful silence the potent floral repressor Flowering Locus C (FLC) by repressing histone mark. AtVal1 is a multi-function protein containing five domains that participate into many recognition processes and is validated to recruit the repress histone modifier PHD-PRC2 complex and interact with components of the ASAP complex target to the FLC nucleation region through recognizing a cis element known as CME (cold memory element) by its plant-specific B3 domain. Here, we determine the crystal structure of the B3 domain in complex with Sph/RY motif in CME. Our structural analysis reveals the specific DNA recognition by B3 domain, combined with our in vitro experiments, we provide the structural insight into the important implication of AtVAL1-B3 domain in flowering process. Copyright © 2018 Elsevier Inc. All rights reserved.

Epigenetic regulation of bud dormancy events in perennial plants

PubMed Central

Ríos, Gabino; Leida, Carmen; Conejero, Ana; Badenes, María Luisa

2014-01-01

Release of bud dormancy in perennial plants resembles vernalization in Arabidopsis thaliana and cereals. In both cases, a certain period of chilling is required for accomplishing the reproductive phase, and several transcription factors with the MADS-box domain perform a central regulatory role in these processes. The expression of DORMANCY-ASSOCIATED MADS-box (DAM)-related genes has been found to be up-regulated in dormant buds of numerous plant species, such as poplar, raspberry, leafy spurge, blackcurrant, Japanese apricot, and peach. Moreover, functional evidence suggests the involvement of DAM genes in the regulation of seasonal dormancy in peach. Recent findings highlight the presence of genome-wide epigenetic modifications related to dormancy events, and more specifically the epigenetic regulation of DAM-related genes in a similar way to FLOWERING LOCUS C, a key integrator of vernalization effectors on flowering initiation in Arabidopsis. We revise the most relevant molecular and genomic contributions in the field of bud dormancy, and discuss the increasing evidence for chromatin modification involvement in the epigenetic regulation of seasonal dormancy cycles in perennial plants. PMID:24917873

Hyporheic Interfaces Serve as Ecological Control Points for Mountainous Landscape Biological Productivity

NASA Astrophysics Data System (ADS)

Newcomer, M. E.; Dwivedi, D.; Raberg, J.; Fox, P. M.; Nico, P. S.; Wainwright, H. M.; Conrad, M. E.; Bill, M.; Bouskill, N.; Williams, K. H.; Hubbard, S.; Steefel, C. I.

2017-12-01

Riverine systems in snow-dominated mountainous regions often express complex biogeochemistry and river nutrient indicators as a function of hydrologic variability. In early spring, meltwater infiltration from a ripened snowpack creates a hydrological gradient through hillslopes, floodplains, and hyporheic zones. During this time, these systems are more-or-less a passive filter that allows the rising limb of the hydrograph to display chemo-dynamic relationships (inversely proportional) with solutes and nutrients. During the growing season, temperatures, plants, microbes, and hydrologic gradients shift dramatically and activate hyporheic-zone biogeochemistry as a major control on water nutrient degradation. Hyporheic biogeochemical reliance on the timing of meltwater infiltration and the possibility of a longer vernal window under future climate change indicates the importance of hyporheic cycling as the dominant ecological control point on carbon and nitrogen fluxes and transformations. The objective of our study is to develop a predictive understanding of the subsurface and surface controls on hyporheic biogeochemical behavior through data-model integration. Data from our 2017 field campaign in the East River, Colorado, a pristine, mountainous watershed, were taken at key times during the rising, peak, falling, and dry limb of the hydrograph. Throughout multiple locations across this spatial and temporal gradient, we measured surface and subsurface gases, geochemistry, isotopes, and hydrological flow conditions and used this data to constrain a numerical flow and reactive transport model of the hyporheic zone that included microbial and flow feedback dynamics. Our data coupled with the predictive power of our numerical model reveal that the hyporheic zone serves dual roles throughout the year—as a net source of nutrients and solutes during the early vernal phase, shifting to a net sink of nutrients during the summer dry season. The possibility of a future lengthened vernal window motivates a better understanding of the role each ecological control point plays in processing landscape biological productivity and for understanding biogeochemical cycling in riverine systems.

76 FR 78942 - Draft Environmental Impact Statement and Proposed Vernal Pool Habitat Conservation Plan for the...

Federal Register 2010, 2011, 2012, 2013, 2014

2011-12-20

... behavioral patterns, including breeding, feeding, or sheltering (50 CFR 17.3). The term ``harass'' is defined... annoying it to such an extent as to significantly disrupt normal behavioral patterns, which include, but... be included in the VPHCP in recognition of the conservation benefits to be provided for them under...

A novel retrotransposon inserted in the dominant Vm-B1 allele confers spring growth habit in tetraploid wheat (Triticum turgidum L.)

USDA-ARS?s Scientific Manuscript database

Wheat is traditionally divided into winter and spring wheat that either has or lacks a vernalization requirement. In this study, a doubled haploid (DH) population derived from a cross between two spring tetraploid wheat (Triticum turgidum L.) genotypes, durum ‘Lebsock’ and Persian wheat accession PI...

MANAGEMENT OF SMALL MAMMALS IN A RELICT GRASSLAND IN CALIFORNIA'S CENTRAL VALLEY

Treesearch

ANNE POOPATANAPONG; DOUGLAS A. KELT

1999-01-01

land-use patterns over the past century. In California's Central Valley these changes have resulted in replacement of native grassland vegetation by non-native annual grasses. Jepson Prairie is a natural reserve that has been set aside to preserve native vernal pool and bunchgrass habitats. Jepson Prairie also provides habitat for several state and federally...

Hydrology and landscape connectivity of vernal pools. Chapter 3.

Treesearch

Scott G. Liebowitz; Robert T. Brooks

2008-01-01

Hydrology is fundamental to wetland establishment and maintenance of wetland processes (Cole et al. 2002). Hydrology has been shown to affect, if not control, many aspects of wetland ecology, including litter decomposition and the accumulation of organic matter and sediment (Barlocher et al. 1978), the composition and productivity of pool fauna (Paton and Couch 2002),...

76 FR 77008 - Notice of Intent To Prepare Environmental Impact Statements and Supplemental Environmental Impact...

Federal Register 2010, 2011, 2012, 2013, 2014

2011-12-09

...] Vernal RMP (2008) [cir] Uinta National Forest Revised Forest Plan (2003) (FS) Wyoming (please note that...] Bighorn Basin RMP revision [cir] Buffalo RMP revision (and existing 1985 Buffalo RMP) [cir] Casper RMP...] Thunder Basin National Grassland LMP (not included in BLM Wyoming Notice of Intent above) (FS) Within the...

Induction of DREB2A pathway with repression of E2F, Jasmonic acid biosynthetic and photosynthesis pathways in cold acclimation specific freeze resistant wheat crown

USDA-ARS?s Scientific Manuscript database

Winter wheat lines can achieve cold acclimation (development of tolerance to freezing temperatures) and vernalization (delay in transition from vegetative to reproductive phase) in response to low non-freezing temperatures. To describe cold acclimation specific processes and pathways, we utilized co...

A resistant-kernel model of connectivity for amphibians that breed in vernal pools

Treesearch

Bradley W. Compton; Kevin McGarigal; Samuel A. Cushman; Lloyd R. Gamble

2007-01-01

Pool-breeding amphibian populations operate at multiple scales, from the individual pool to surrounding upland habitat to clusters of pools. When metapopulation dynamics play a role in long-term viability, conservation efforts limited to the protection of individual pools or even pools with associated upland habitat may be ineffective over the long term if connectivity...

Taurus

NASA Astrophysics Data System (ADS)

Murdin, P.

2000-11-01

(the Bull; abbrev. Tau, gen. Tauri; area 797 sq. deg.) A northern zodiacal constellation which lies between Aries and Orion, and culminates at midnight in late November. It is one of the oldest constellations, dating back to when the Sun was in that part of the sky at the vernal (spring) equinox, between about 4000 and 1800 BC. Later, in Greek mythology, it was identified with the form assumed by...

Biodiversity of mycorrhizas on Garry oak (Quercus garryana) in a southern Oregon savanna

Treesearch

Lori L. Valentine; Tina L. Fiedler; Stephen R. Haney; Harold K. Berninghausen; Darlene Southworth

2002-01-01

Garry oak or Oregon white oak (Quercus garryana) is the dominant vegetation on the Whetstone Savanna in Jackson County, Oregon. The site is located on the western edge of the Agate Desert, an alluvial fan capped with shallow clay loam over a cemented hardpan. The landform exhibits patterned ground with mounds and vernal pools. The oaks are associated...

Public Participation and Natural Habitat Preservation Along Arcade Creek, Del Paso Regional Park, Sacramento, California

Treesearch

Timothy J. Vendlinski; Steven N. Talley

1989-01-01

Thirty-six hectares (90 acres) of riparian forest, high terrace oak woodland-savanna, and upland vernal pools were preserved along Arcade Creek in Sacramento, California as a result of citizen involvement in a city-sponsored master plan process for Del Paso Regional Park. Citizens formed an organization and called for a comprehensive Environmental Impact Report to...

National Plant Genome Initiative

DTIC Science & Technology

2005-01-01

lines that do not require vernalization to fl ower. The capacity of temperate cereals like wheat and barley to generate spring forms through...the potential to modify fl owering time of different cereals for specifi c climates. 10 Progress Reported in 2004 • Bioinformatics The NPGI...developing an open source genome annotation pipeline as well as tools to present and manage information about natural variation in cereal varieties

Joint microwave and infrared studies for soil moisture determination

NASA Technical Reports Server (NTRS)

Njoku, E. G.; Schieldge, J. P.; Kahle, A. B. (Principal Investigator)

1980-01-01

The feasibility of using a combined microwave-thermal infrared system to determine soil moisture content is addressed. Of particular concern are bare soils. The theoretical basis for microwave emission from soils and the transport of heat and moisture in soils is presented. Also, a description is given of the results of two field experiments held during vernal months in the San Joaquin Valley of California.

Transcript Profile of Flowering Regulatory Genes in VcFT-Overexpressing Blueberry Plants

PubMed Central

Walworth, Aaron E.; Chai, Benli; Song, Guo-qing

2016-01-01

In order to identify genetic components in flowering pathways of highbush blueberry (Vaccinium corymbosum L.), a transcriptome reference composed of 254,396 transcripts and 179,853 gene contigs was developed by assembly of 72.7 million reads using Trinity. Using this transcriptome reference and a query of flowering pathway genes of herbaceous plants, we identified potential flowering pathway genes/transcripts of blueberry. Transcriptome analysis of flowering pathway genes was then conducted on leaf tissue samples of transgenic blueberry cv. Aurora (‘VcFT-Aurora’), which overexpresses a blueberry FLOWERING LOCUS T-like gene (VcFT). Sixty-one blueberry transcripts of 40 genes showed high similarities to 33 known flowering-related genes of herbaceous plants, of which 17 down-regulated and 16 up-regulated genes were identified in ‘VcFT-Aurora’. All down-regulated genes encoded transcription factors/enzymes upstream in the signaling pathway containing VcFT. A blueberry CONSTANS-LIKE 5-like (VcCOL5) gene was down-regulated and associated with five other differentially expressed (DE) genes in the photoperiod-mediated flowering pathway. Three down-regulated genes, i.e., a MADS-AFFECTING FLOWERING 2-like gene (VcMAF2), a MADS-AFFECTING FLOWERING 5-like gene (VcMAF5), and a VERNALIZATION1-like gene (VcVRN1), may function as integrators in place of FLOWERING LOCUS C (FLC) in the vernalization pathway. Because no CONSTAN1-like or FLOWERING LOCUS C-like genes were found in blueberry, VcCOL5 and VcMAF2/VcMAF5 or VRN1 might be the major integrator(s) in the photoperiod- and vernalization-mediated flowering pathway, respectively. The major down-stream genes of VcFT, i.e., SUPPRESSOR of Overexpression of Constans 1-like (VcSOC1), LEAFY-like (VcLFY), APETALA1-like (VcAP1), CAULIFLOWER 1-like (VcCAL1), and FRUITFULL-like (VcFUL) genes were present and showed high similarity to their orthologues in herbaceous plants. Moreover, overexpression of VcFT promoted expression of all of these VcFT downstream genes. These results suggest that VcFT’s down-stream genes appear conserved in blueberry. PMID:27271296

Transcript Profile of Flowering Regulatory Genes in VcFT-Overexpressing Blueberry Plants.

PubMed

Walworth, Aaron E; Chai, Benli; Song, Guo-Qing

2016-01-01

In order to identify genetic components in flowering pathways of highbush blueberry (Vaccinium corymbosum L.), a transcriptome reference composed of 254,396 transcripts and 179,853 gene contigs was developed by assembly of 72.7 million reads using Trinity. Using this transcriptome reference and a query of flowering pathway genes of herbaceous plants, we identified potential flowering pathway genes/transcripts of blueberry. Transcriptome analysis of flowering pathway genes was then conducted on leaf tissue samples of transgenic blueberry cv. Aurora ('VcFT-Aurora'), which overexpresses a blueberry FLOWERING LOCUS T-like gene (VcFT). Sixty-one blueberry transcripts of 40 genes showed high similarities to 33 known flowering-related genes of herbaceous plants, of which 17 down-regulated and 16 up-regulated genes were identified in 'VcFT-Aurora'. All down-regulated genes encoded transcription factors/enzymes upstream in the signaling pathway containing VcFT. A blueberry CONSTANS-LIKE 5-like (VcCOL5) gene was down-regulated and associated with five other differentially expressed (DE) genes in the photoperiod-mediated flowering pathway. Three down-regulated genes, i.e., a MADS-AFFECTING FLOWERING 2-like gene (VcMAF2), a MADS-AFFECTING FLOWERING 5-like gene (VcMAF5), and a VERNALIZATION1-like gene (VcVRN1), may function as integrators in place of FLOWERING LOCUS C (FLC) in the vernalization pathway. Because no CONSTAN1-like or FLOWERING LOCUS C-like genes were found in blueberry, VcCOL5 and VcMAF2/VcMAF5 or VRN1 might be the major integrator(s) in the photoperiod- and vernalization-mediated flowering pathway, respectively. The major down-stream genes of VcFT, i.e., SUPPRESSOR of Overexpression of Constans 1-like (VcSOC1), LEAFY-like (VcLFY), APETALA1-like (VcAP1), CAULIFLOWER 1-like (VcCAL1), and FRUITFULL-like (VcFUL) genes were present and showed high similarity to their orthologues in herbaceous plants. Moreover, overexpression of VcFT promoted expression of all of these VcFT downstream genes. These results suggest that VcFT's down-stream genes appear conserved in blueberry.

HvFT1 polymorphism and effect—survey of barley germplasm and expression analysis

PubMed Central

Loscos, Jorge; Igartua, Ernesto; Contreras-Moreira, Bruno; Gracia, M. Pilar; Casas, Ana M.

2014-01-01

Flowering time in plants is a tightly regulated process. In barley (Hordeum vulgare L.), HvFT1, ortholog of FLOWERING LOCUS T, is the main integrator of the photoperiod and vernalization signals leading to the transition from vegetative to reproductive state of the plant. This gene presents sequence polymorphisms affecting flowering time in the first intron and in the promoter. Recently, copy number variation (CNV) has been described for this gene. An allele with more than one copy was linked to higher gene expression, earlier flowering, and an overriding effect of the vernalization mechanism. This study aims at (1) surveying the distribution of HvFT1 polymorphisms across barley germplasm and (2) assessing gene expression and phenotypic effects of HvFT1 alleles. We analyzed HvFT1 CNV in 109 winter, spring, and facultative barley lines. There was more than one copy of the gene (2–5) only in spring or facultative barleys without a functional vernalization VrnH2 allele. CNV was investigated in several regions inside and around HvFT1. Two models of the gene were found: one with the same number of promoters and transcribed regions, and another with one promoter and variable number of transcribed regions. This last model was found in Nordic barleys only. Analysis of HvFT1 expression showed that association between known polymorphisms at the HvFT1 locus and the expression of the gene was highly dependent on the genetic background. Under long day conditions the earliest flowering lines carried a sensitive PpdH1 allele. Among spring cultivars with different number of copies, no clear relation was found between CNV, gene expression and flowering time. This was confirmed in a set of doubled haploid lines of a population segregating for HvFT1 CNV. Earlier flowering in the presence of several copies of HvFT1 was only seen in cultivar Tammi, which carries one promoter, suggesting a relation of gene structure with its regulation. HvCEN also affected to a large extent flowering time. PMID:24936204

Potential Natural Vegetation of the Mississippi Alluvial Valley: Bayou Meto Basin, Arkansas, Field Atlas

DTIC Science & Technology

2012-09-01

most sites and overcup oak is the principal species in vernal pools. RB7 Frequently flooded lowlands Dominants: Overcup oak Bitter pecan ...controlled by extended periods of backwater flooding in most years. The characteristic community is dominated by overcup oak, bitter pecan , and a limited...stream: Dominants: Overcup oak Water locust Bitter pecan Associates: Nuttall oak Water elm Swamp privet Side slopes of abandoned

Environmental Assessment: Combat Information Transport System Upgrade Vandenberg Air Force Base, California

DTIC Science & Technology

2006-07-21

William C. Sturtevant, general editor. Smithsonian Institution, Washington , D.C. 1978b Eastern Coastal Chumash. In California, edited by Robert F...for reducing this burden, to Washington Headquarters Services, Directorate for Information Operations and Reports, 1215 Jefferson Davis Highway, Suite...the near vicinity of suitable vernal pool fairy shrimp habitat (i.e. Red Road, Tangair Road, and 13th Street). ~ If feasible, construction equipment

Increased incidence of thyroid dysfunction and autoimmunity in patients with vernal keratoconjunctivitis.

PubMed

Stagi, Stefano; Pucci, Neri; Di Grande, Laura; de Libero, Cinzia; Caputo, Roberto; Pantano, Stefano; Mattei, Ivan; Mori, Francesca; de Martino, Maurizio; Novembre, Elio

2014-01-01

Hormones may play a role in the pathophysiology of vernal keratoconjunctivitis (VKC). An increased incidence of thyroid autoantibodies was recently observed in VKC, although there were no data on thyroid function. Two hundred and eighty-eight patients (202 males, 86 females; range 5.5 to 16.9 years) with VKC were evaluated and compared with 188 normal age- and sex-matched subjects. In all subjects, serum concentrations of free T4, TSH, thyroperoxidase, thyroglobulin, and TSHr autoantibodies were evaluated. In VKC, the family history of thyroid diseases showed no significant differences compared to the controls (9.4 versus 8.6%), whereas the family history of autoimmune diseases was significantly higher (13.2% versus 6.3%; P<0.05). Subclinical hypothyroidism was diagnosed in 6.6% (versus 1.6% of the controls; P<0.05) and overt hypothyroidism in 0.7% (versus 0.0% of the controls; P = NS). Finally, 5.2% of patients were positive for thyroid autoantibodies, which were significantly higher with respect to the controls (0.5%, P<0.05). In the patients positive for thyroid autoantibodies, 80% showed a sonography pattern that suggested autoimmune thyroiditis. Thyroid function and autoimmunity abnormalities are frequently present in children with VKC. Children with VKC should be screened for thyroid function and evaluated for thyroid autoimmunity.

Increased Incidence of Thyroid Dysfunction and Autoimmunity in Patients with Vernal Keratoconjunctivitis

PubMed Central

Stagi, Stefano; Pucci, Neri; Di Grande, Laura; de Libero, Cinzia; Caputo, Roberto; Pantano, Stefano; Mattei, Ivan; Mori, Francesca; de Martino, Maurizio; Novembre, Elio

2014-01-01

Hormones may play a role in the pathophysiology of vernal keratoconjunctivitis (VKC). An increased incidence of thyroid autoantibodies was recently observed in VKC, although there were no data on thyroid function. Two hundred and eighty-eight patients (202 males, 86 females; range 5.5 to 16.9 years) with VKC were evaluated and compared with 188 normal age- and sex-matched subjects. In all subjects, serum concentrations of free T4, TSH, thyroperoxidase, thyroglobulin, and TSHr autoantibodies were evaluated. In VKC, the family history of thyroid diseases showed no significant differences compared to the controls (9.4 versus 8.6%), whereas the family history of autoimmune diseases was significantly higher (13.2% versus 6.3%; P<0.05). Subclinical hypothyroidism was diagnosed in 6.6% (versus 1.6% of the controls; P<0.05) and overt hypothyroidism in 0.7% (versus 0.0% of the controls; P = NS). Finally, 5.2% of patients were positive for thyroid autoantibodies, which were significantly higher with respect to the controls (0.5%, P<0.05). In the patients positive for thyroid autoantibodies, 80% showed a sonography pattern that suggested autoimmune thyroiditis. Thyroid function and autoimmunity abnormalities are frequently present in children with VKC. Children with VKC should be screened for thyroid function and evaluated for thyroid autoimmunity. PMID:25140177

Incorporating incorporating economic models into seasonal pool conservation planning

USGS Publications Warehouse

Freeman, Robert C.; Bell, Kathleen P.; Calhoun, Aram J.K.; Loftin, Cyndy

2012-01-01

Massachusetts, New Jersey, Connecticut, and Maine have adopted regulatory zones around seasonal (vernal) pools to conserve terrestrial habitat for pool-breeding amphibians. Most amphibians require access to distinct seasonal habitats in both terrestrial and aquatic ecosystems because of their complex life histories. These habitat requirements make them particularly vulnerable to land uses that destroy habitat or limit connectivity (or permeability) among habitats. Regulatory efforts focusing on breeding pools without consideration of terrestrial habitat needs will not ensure the persistence of pool-breeding amphibians. We used GIS to combine a discrete-choice, parcel-scale economic model of land conversion with a landscape permeability model based on known habitat requirements of wood frogs (Lithobates sylvaticus) in Maine (USA) to examine permeability among habitat elements for alternative future scenarios. The economic model predicts future landscapes under different subdivision open space and vernal pool regulatory requirements. Our model showed that even “no build” permit zones extending 76 m (250 ft) outward from the pool edge were insufficient to assure permeability among required habitat elements. Furthermore, effectiveness of permit zones may be inconsistent due to interactions with other growth management policies, highlighting the need for local and state planning for the long-term persistence of pool-breeding amphibians in developing landscapes.

Strengthening the Scientific Capacity Available to Serve the Nation

DTIC Science & Technology

2009-03-01

motivating and engaging ways. In 2005, the JASON Project traveled to the Panamanian rainforest and Mr. Phillips introduced his class to the project by reading...The Great Kapok Tree.22 Mr. Phillips had his students compare the rainforest in Panama with their local forest in Plymouth and discussions and debate...filled cover about the project.25 Mr. Phillips’ students then constructed a web page and populated it with rainforest and Plymouth vernal pool

Ritonavir and Topical Ocular Corticosteroid Induced Cushing's Syndrome in an Adolescent With HIV-1 Infection.

PubMed

Rainsbury, Paul G; Sharp, Jessica; Tappin, Alison; Hussey, Martin; Lenko, Alexandra; Foster, Caroline

2017-05-01

Cushing's syndrome after topical ocular corticosteroid use is extremely rare. We describe a case of symptomatic Cushing's syndrome in an adolescent male with sight-threatening vernal keratoconjunctivitis on antiretroviral therapy for HIV-1 infection that included ritonavir, a potent cytochrome p450 CYP3A4 inhibitor. CYP3A4 inhibition reduces the metabolism of exogenous corticosteroids leading to suppression of endogenous steroid production and Cushing's syndrome.

Military Geodesy and Geospace Science Unit One

DTIC Science & Technology

1981-02-01

present section. The Coordinate Systems - The two fundamental planes for the definition of stellar and earth-fixed coordinate sys- tems are the...night are of equal length. The vernal eguinox .is taken as the fundamental direction (x-axis) for the space-fixed system . The plane of the equator is...GEOPHYSICS LABORATORY 4 AIR FORCE SYSTEMS COMMAND UNITED STATES AIR FORCE D HANSCOM AFB, MASSACHUSETTS 01731 81 9 10 038 BLANK PAGES IN THIS DOCUMENT WERE

Regional Supplement to the Corps of Engineers Wetland Delineation Manual: Arid West Region (Version 2.0)

DTIC Science & Technology

2008-09-01

23 Table 5. Example of the Prevalence Index using the same data as in Table 4. .................................25 Table 6. Proportion of fibers ...Mountains in Washington, Oregon, and southern Idaho. Much of the subregion is covered by deposits of loess, volcanic ash, and basalt . The climate is semi...usually underlain by an impermeable layer such as a hardpan, claypan, or basalt . Vernal pools often fill and empty several times during the rainy

Interpretation of Hydrographic Features Using Landsat Images,

DTIC Science & Technology

1981-06-01

photograph, Western Atlantic Ocean Figure B-2. Apollo 7, Oblique 146 photograph, Gulf of California (October 13, 1968) Figure B-3. Solar elevation 147 angle...of Land,,it imagery uises the the Hotine Oblique Mercator (HOM) map low-gain Linear setting where signals projection. on all four Iiainnels 1lave...Inclination to ecliptic =23.44 ° eliminate sunglint and enhance the A = Sun’s apparent position (00 at water color is to subtract an IR vernal equinox

Sweet vernal grasses (Anthoxanthum) colonized African mountains along two fronts in the Late Pliocene, followed by secondary contact, polyploidization and local extinction in the Pleistocene.

PubMed

Tusiime, Felly Mugizi; Gizaw, Abel; Wondimu, Tigist; Masao, Catherine Aloyce; Abdi, Ahmed Abdikadir; Muwanika, Vincent; Trávníček, Pavel; Nemomissa, Sileshi; Popp, Magnus; Eilu, Gerald; Brochmann, Christian; Pimentel, Manuel

2017-07-01

High tropical mountains harbour remarkable and fragmented biodiversity thought to a large degree to have been shaped by multiple dispersals of cold-adapted lineages from remote areas. Few dated phylogenetic/phylogeographic analyses are however available. Here, we address the hypotheses that the sub-Saharan African sweet vernal grasses have a dual colonization history and that lineages of independent origins have established secondary contact. We carried out rangewide sampling across the eastern African high mountains, inferred dated phylogenies from nuclear ribosomal and plastid DNA using Bayesian methods, and performed flow cytometry and AFLP (amplified fragment length polymorphism) analyses. We inferred a single Late Pliocene western Eurasian origin of the eastern African taxa, whose high-ploid populations in one mountain group formed a distinct phylogeographic group and carried plastids that diverged from those of the currently allopatric southern African lineage in the Mid- to Late Pleistocene. We show that Anthoxanthum has an intriguing history in sub-Saharan Africa, including Late Pliocene colonization from southeast and north, followed by secondary contact, hybridization, allopolyploidization and local extinction during one of the last glacial cycles. Our results add to a growing body of evidence showing that isolated tropical high mountain habitats have a dynamic recent history involving niche conservatism and recruitment from remote sources, repeated dispersals, diversification, hybridization and local extinction. © 2017 John Wiley & Sons Ltd.

Effects of vernal and allergic conjunctivitis on severity of keratoconus

PubMed Central

Cingu, Abdullah Kursat; Cinar, Yasin; Turkcu, Fatih Mehmet; Sahin, Alparslan; Ari, Seyhmus; Yuksel, Harun; Sahin, Muhammed; Caca, Ihsan

2013-01-01

AIM To demonstrate the effects of two different types of allergic conjunctivitis on severity of keratoconus (KC). METHODS We retrospectively reviewed the medical records of 171 KC patients referred between June 2010 and June 2011. The KC patients were divided into 3 groups as KC (group A), KC with vernal keratoconjunctivitis (VKC) (group B) and KC with allergic conjunctivitis (AC) (group C). Main outcome measures were demographic and ocular clinical features including age at presentation, gender, spherical equivalent (SE), best spectacle corrected visual acuity (BCVA), mean keratometric measurement (Km), central corneal thickness (CCT), and intraocular pressure (IOP). Groups were compared in term of study variables. RESULTS The median age at presentation was significantly lower in group B (P<0.001). According to the median SE (P=0.003), BCVA (P=0.022), Km (P<0.001), CCT (P=0.015) and Amsler–Krumeich classification (P<0.001), KC was more severe in group B. There was no significant difference in terms of IOP and corrected IOP among the groups (P=0.44), however there were 4 patients who had increased corrected IOP developed after topical corticosteroid use in group B. The differences among the groups persisted even after controlling for age and gender. CONCLUSION Our findings demonstrated a more severe KC in VKC patients despite their younger age which suggests evaluation of VKC patients as a separate group in keratoconus disease. PMID:23826535

Effects of vernal and allergic conjunctivitis on severity of keratoconus.

PubMed

Cingu, Abdullah Kursat; Cinar, Yasin; Turkcu, Fatih Mehmet; Sahin, Alparslan; Ari, Seyhmus; Yuksel, Harun; Sahin, Muhammed; Caca, Ihsan

2013-01-01

To demonstrate the effects of two different types of allergic conjunctivitis on severity of keratoconus (KC). We retrospectively reviewed the medical records of 171 KC patients referred between June 2010 and June 2011. The KC patients were divided into 3 groups as KC (group A), KC with vernal keratoconjunctivitis (VKC) (group B) and KC with allergic conjunctivitis (AC) (group C). Main outcome measures were demographic and ocular clinical features including age at presentation, gender, spherical equivalent (SE), best spectacle corrected visual acuity (BCVA), mean keratometric measurement (Km), central corneal thickness (CCT), and intraocular pressure (IOP). Groups were compared in term of study variables. The median age at presentation was significantly lower in group B (P<0.001). According to the median SE (P=0.003), BCVA (P=0.022), Km (P<0.001), CCT (P=0.015) and Amsler-Krumeich classification (P<0.001), KC was more severe in group B. There was no significant difference in terms of IOP and corrected IOP among the groups (P=0.44), however there were 4 patients who had increased corrected IOP developed after topical corticosteroid use in group B. The differences among the groups persisted even after controlling for age and gender. Our findings demonstrated a more severe KC in VKC patients despite their younger age which suggests evaluation of VKC patients as a separate group in keratoconus disease.

Effect of vernal keratoconjunctivitis on vitreous depth in patients with keratoconus.

PubMed

Cingü, Abdullah Kürşat; Kaya, Savaş; Çınar, Yasin; Şahin, Muhammed; Türkçü, Fatih Mehmet; Yüksel, Harun; Murat, Mehmet; Çaça, İhsan

2015-05-01

The aim of this study was to comparatively evaluate the vitreous depth (VD) of keratoconic eyes in patients with or without vernal keratoconjunctivitis (VKC). Eighty eyes of 80 consecutive keratoconus (KC) patients and 40 emmetropic control subjects were enrolled. KC patients were divided into two groups according to accompanying VKC (VKC-KC group and KC group). Mean outcome measures were best-corrected visual acuity (BCVA), spherical equivalent (SE), mean keratometry (Km), intraocular pressure (IOP), and axial length (AL) and its components. The eyes with the highest Km were selected for statistical analysis for each participant. There were 50, 30, and 40 patients in the VKC-KC group, KC group, and control group respectively. The KC group and VKC-KC group were similar in BCVA, SE, Km, CCT, ACD, LT, and IOP (p>0.05). The mean ACD was significantly lower in the control group when compared with the KC group and VKC-KC group. The mean AL and VD were significantly higher in VKC-KC group than those of KC group and the control group, whereas similar in KC and control groups (p>0.05). In the current study we showed that VKC-associated KC patients have significantly longer AL and VD when compared with KC patients without VKC. Posterior segment elongation in VKC-KC group may be associated with the type IV collagen destruction due to chronic longstanding inflammation in VKC patients.

Lack of adaptation from standing genetic variation despite the presence of putatively adaptive alleles in introduced sweet vernal grass (Anthoxanthum odoratum).

PubMed

Gould, B; Geber, M

2016-01-01

Population genetic theory predicts that the availability of appropriate standing genetic variation should facilitate rapid evolution when species are introduced to new environments. However, few tests of rapid evolution have been paired with empirical surveys for the presence of previously identified adaptive genetic variants in natural populations. In this study, we examined local adaptation to soil Al toxicity in the introduced range of sweet vernal grass (Anthoxanthum odoratum), and we genotyped populations for the presence of Al tolerance alleles previously identified at the long-term ecological Park Grass Experiment (PGE, Harpenden, UK) in the species native range. We found that markers associated with Al tolerance at the PGE were present at appreciable frequency in introduced populations. Despite this, there was no strong evidence of local adaptation to soil Al toxicity among populations. Populations demonstrated significantly different intrinsic root growth rates in the absence of Al. This suggests that selection on correlated root growth traits may constrain the ability of populations to evolve significantly different root growth responses to Al. Our results demonstrate that genotype-phenotype associations may differ substantially between the native and introduced parts of a species range and that adaptive alleles from a native species range may not necessarily promote phenotypic differentiation in the introduced range. © 2015 European Society For Evolutionary Biology. Journal of Evolutionary Biology © 2015 European Society For Evolutionary Biology.

Building a Better Model: A Personalized Breast Cancer Risk Model Incorporating Breast Density to Stratify Risk and Improve Application of Resources

DTIC Science & Technology

2015-12-01

and edits by the study team, CSR conducted a second round of focus groups in early 2013, designed as group self-administered pre- tests followed by...the group early on . Bi-weekly conference calls were held on Tuesdays at noon. An agenda preceded each call by at least one day. Quarterly Team...not use Twitter. However, Vernal Branch, one of our advocates, posted tweets about the project through the Virginia Breast Cancer Foundation. The

Supplemental Environmental Assessment (EA) for the Vernal Pool Restoration Project in Wing Infrastructure Development Outlook (WINDO) Implementation Plan EA, Volume 2 Beale Air Force Base, California

DTIC Science & Technology

2010-09-01

Mineral resources include metals, industrial minerals (e.g., aggregate, sand and gravel), oil and gas, and geothermal resources that would be of value...the elderberry shrub ( Sambucus sp.), is not present within the project action area. The proposed project is not likely to adversely affect the bald...impairing essential behavioral patterns, including breeding, feeding, or sheltering. Harass is defined by the Service as an action that creates the

Seasonal variations in daily rhythms of activity in athletic horses.

PubMed

Bertolucci, C; Giannetto, C; Fazio, F; Piccione, G

2008-07-01

Circadian rhythms reflect extensive programming of biological activity that meets and exploits the challenges and opportunities offered by the periodic nature of the environment. In the present investigation, we recorded the total activity of athletic horses kept at four different times of the year (vernal equinox, summer solstice, autumn equinox and winter solstice), to evaluate the presence of seasonal variations of daily activity rhythms. Athletic Thoroughbred horses were kept in individual boxes with paddock. Digitally integrated measure of total activity of each mare was continuously recorded by actigraphy-based data loggers. Horse total activities were not evenly distributed over the day, but they were mainly diurnal during the year. Daily activity rhythms showed clear seasonal variations, with the highest daily amount of activity during the vernal equinox and the lowest during the winter solstice. Interestingly, the amount of activity during either photophase or scotophase changed significantly throughout the year. Circadian analysis of horse activities showed that the acrophase, the estimated time at which the peak of the rhythm occurs, did not change during the year, it always occurred in the middle of the photoperiod. Analysing the time structure of long-term and continuously measured activity and feeding could be a useful method to critically evaluate athletic horse management systems in which spontaneous locomotor activity and feeding are severely limited. Circadian rhythms are present in several elements of sensory motor and psychomotor functions and these would be taken into consideration to plan the training schedules and competitions in athletic horses.

Nucleotide polymorphism affecting FLC expression underpins heading date variation in horticultural brassicas.

PubMed

Irwin, Judith A; Soumpourou, Eleni; Lister, Clare; Ligthart, Jan-Dick; Kennedy, Sue; Dean, Caroline

2016-09-01

Variation in flowering time and response to overwintering has been exploited to breed brassica vegetables that can be harvested year-round. Our knowledge of flowering time control now enables the investigation of the molecular basis of this important variation. Here, we show that a major determinant of heading date variation in Brassica oleracea is from variation in vernalization response through allelic variation at FLOWERING LOCUS C.C2 (BoFLC4). We characterize two alleles of BoFLC.C2 that are both functional and confer a requirement for vernalization, but they show distinct expression dynamics in response to cold. Complementation experiments in Arabidopsis thaliana revealed that the allelic variation results from cis polymorphism at BoFLC.C2, which quantitatively influences the degree of cold-induced epigenetic silencing. This results in one allelic variant conferring consistently later heading under both glasshouse and field conditions through reduced environmental sensitivity. Our results suggest that breeding of brassica varieties for commercially valuable variation in heading date has been achieved through the selection of cis polymorphism at FLC, similar to that underpinning natural variation in A. thaliana. This understanding will allow for the selection of alleles with distinct sensitivities to cold and robust heading dates under variable climatic conditions, and will facilitate the breeding of varieties more resistant to climate change. © 2016 The Authors. The Plant Journal published by Society for Experimental Biology and John Wiley & Sons Ltd.

Expansion of the phosphatidylethanolamine binding protein family in legumes: a case study of Lupinus angustifolius L. FLOWERING LOCUS T homologs, LanFTc1 and LanFTc2.

PubMed

Książkiewicz, Michał; Rychel, Sandra; Nelson, Matthew N; Wyrwa, Katarzyna; Naganowska, Barbara; Wolko, Bogdan

2016-10-21

The Arabidopsis FLOWERING LOCUS T (FT) gene, a member of the phosphatidylethanolamine binding protein (PEBP) family, is a major controller of flowering in response to photoperiod, vernalization and light quality. In legumes, FT evolved into three, functionally diversified clades, FTa, FTb and FTc. A milestone achievement in narrow-leafed lupin (Lupinus angustifolius L.) domestication was the loss of vernalization responsiveness at the Ku locus. Recently, one of two existing L. angustifolius homologs of FTc, LanFTc1, was revealed to be the gene underlying Ku. It is the first recorded involvement of an FTc homologue in vernalization. The evolutionary basis of this phenomenon in lupin has not yet been deciphered. Bacterial artificial chromosome (BAC) clones carrying LanFTc1 and LanFTc2 genes were localized in different mitotic chromosomes and constituted sequence-specific landmarks for linkage groups NLL-10 and NLL-17. BAC-derived superscaffolds containing LanFTc genes revealed clear microsyntenic patterns to genome sequences of nine legume species. Superscaffold-1 carrying LanFTc1 aligned to regions encoding one or more FT-like genes whereas superscaffold-2 mapped to a region lacking such a homolog. Comparative mapping of the L. angustifolius genome assembly anchored to linkage map localized superscaffold-1 in the middle of a 15 cM conserved, collinear region. In contrast, superscaffold-2 was found at the edge of a 20 cM syntenic block containing highly disrupted collinearity at the LanFTc2 locus. 118 PEBP-family full-length homologs were identified in 10 legume genomes. Bayesian phylogenetic inference provided novel evidence supporting the hypothesis that whole-genome and tandem duplications contributed to expansion of PEBP-family genes in legumes. Duplicated genes were subjected to strong purifying selection. Promoter analysis of FT genes revealed no statistically significant sequence similarity between duplicated copies; only RE-alpha and CCAAT-box motifs were found at conserved positions and orientations. Numerous lineage-specific duplications occurred during the evolution of legume PEBP-family genes. Whole-genome duplications resulted in the origin of subclades FTa, FTb and FTc and in the multiplication of FTa and FTb copy number. LanFTc1 is located in the region conserved among all main lineages of Papilionoideae. LanFTc1 is a direct descendant of ancestral FTc, whereas LanFTc2 appeared by subsequent duplication.

A Tourist-like MITE insertion in the upstream region of the BnFLC.A10 gene is associated with vernalization requirement in rapeseed (Brassica napus L.)

PubMed Central

2012-01-01

Background Rapeseed (Brassica napus L.) has spring and winter genotypes adapted to different growing seasons. Winter genotypes do not flower before the onset of winter, thus leading to a longer vegetative growth period that promotes the accumulation and allocation of more resources to seed production. The development of winter genotypes enabled the rapeseed to spread rapidly from southern to northern Europe and other temperate regions of the world. The molecular basis underlying the evolutionary transition from spring- to winter- type rapeseed is not known, however, and needs to be elucidated. Results We fine-mapped the spring environment specific quantitative trait locus (QTL) for flowering time, qFT10-4,in a doubled haploid (DH) mapping population of rapeseed derived from a cross between Tapidor (winter-type) and Ningyou7 (semi-winter) and delimited the qFT10-4 to an 80-kb region on chromosome A10 of B. napus. The BnFLC.A10 gene, an ortholog of FLOWERING LOCUS C (FLC) in Arabidopsis, was cloned from the QTL. We identified 12 polymorphic sites between BnFLC.A10 parental alleles of the TN-DH population in the upstream region and in intron 1. Expression of both BnFLC.A10 alleles decreased during vernalization, but decreased more slowly in the winter parent Tapidor. Haplotyping and association analysis showed that one of the polymorphic sites upstream of BnFLC.A10 is strongly associated with the vernalization requirement of rapeseed (r2 = 0.93, χ2 = 0.50). This polymorphic site is derived from a Tourist-like miniature inverted-repeat transposable element (MITE) insertion/deletion in the upstream region of BnFLC.A10. The MITE sequence was not present in the BnFLC.A10 gene in spring-type rapeseed, nor in ancestral ‘A’ genome species B. rapa genotypes. Our results suggest that the insertion may have occurred in winter rapeseed after B. napus speciation. Conclusions Our findings strongly suggest that (i) BnFLC.A10 is the gene underlying qFT10-4, the QTL for phenotypic diversity of flowering time in the TN-DH population, (ii) the allelic diversity caused by MITE insertion/deletion upstream of BnFLC.A10 is one of the major causes of differentiation of winter and spring genotypes in rapeseed and (iii) winter rapeseed has evolved from spring genotypes through selection pressure at the BnFLC.A10 locus, enabling expanded cultivation of rapeseed along the route of Brassica domestication. PMID:23241244

A Tourist-like MITE insertion in the upstream region of the BnFLC.A10 gene is associated with vernalization requirement in rapeseed (Brassica napus L.).

PubMed

Hou, Jinna; Long, Yan; Raman, Harsh; Zou, Xiaoxiao; Wang, Jing; Dai, Shutao; Xiao, Qinqin; Li, Cong; Fan, Longjiang; Liu, Bin; Meng, Jinling

2012-12-15

Rapeseed (Brassica napus L.) has spring and winter genotypes adapted to different growing seasons. Winter genotypes do not flower before the onset of winter, thus leading to a longer vegetative growth period that promotes the accumulation and allocation of more resources to seed production. The development of winter genotypes enabled the rapeseed to spread rapidly from southern to northern Europe and other temperate regions of the world. The molecular basis underlying the evolutionary transition from spring- to winter- type rapeseed is not known, however, and needs to be elucidated. We fine-mapped the spring environment specific quantitative trait locus (QTL) for flowering time, qFT10-4,in a doubled haploid (DH) mapping population of rapeseed derived from a cross between Tapidor (winter-type) and Ningyou7 (semi-winter) and delimited the qFT10-4 to an 80-kb region on chromosome A10 of B. napus. The BnFLC.A10 gene, an ortholog of FLOWERING LOCUS C (FLC) in Arabidopsis, was cloned from the QTL. We identified 12 polymorphic sites between BnFLC.A10 parental alleles of the TN-DH population in the upstream region and in intron 1. Expression of both BnFLC.A10 alleles decreased during vernalization, but decreased more slowly in the winter parent Tapidor. Haplotyping and association analysis showed that one of the polymorphic sites upstream of BnFLC.A10 is strongly associated with the vernalization requirement of rapeseed (r2 = 0.93, χ2 = 0.50). This polymorphic site is derived from a Tourist-like miniature inverted-repeat transposable element (MITE) insertion/deletion in the upstream region of BnFLC.A10. The MITE sequence was not present in the BnFLC.A10 gene in spring-type rapeseed, nor in ancestral 'A' genome species B. rapa genotypes. Our results suggest that the insertion may have occurred in winter rapeseed after B. napus speciation. Our findings strongly suggest that (i) BnFLC.A10 is the gene underlying qFT10-4, the QTL for phenotypic diversity of flowering time in the TN-DH population, (ii) the allelic diversity caused by MITE insertion/deletion upstream of BnFLC.A10 is one of the major causes of differentiation of winter and spring genotypes in rapeseed and (iii) winter rapeseed has evolved from spring genotypes through selection pressure at the BnFLC.A10 locus, enabling expanded cultivation of rapeseed along the route of Brassica domestication.

A Survey of Geosynchronous Satellite Glints

NASA Astrophysics Data System (ADS)

Vrba, F.; Hutter, D.; Shankland, P.; Armstrong, J.; Schmitt, H.; Hindsley, R.; Divittorio, M.; Benson, J.

Artificial satellites have characteristic diffuse reflected-light signatures as they are illuminated at varying phase angles by the Sun and are viewed at differing orientations by an observer. At times of favorable alignment between the satellite, observer and Sun, specular reflection off of relatively flat surfaces, such as solar panels, can cause brief increases in reflected light of several hundred times that of the nominal diffuse signature. Such events are commonly referred to as "glints". In the case of geosynchronous satellites, favorable glint alignments are due to changes in the Sun-Vehicle-Observer angle which are primarily due to the apparent motion of the Sun as the observer-satellite vector remains nearly stationary. These occur near in time to the vernal and autumnal equinoxes. While the most favorable geosynchronous satellite glint alignments are precluded by the fact that the satellites are at that time most likely to be in Earth shadow, observations of several glints have been reported in the literature. While such studies note the peak brightnesses, durations, and phase angles of individual glints, to our knowledge, no extended study of geosynchronous glint characteristics exists. Beginning with the autumnal equinox glint season of 2007 we have built on our earlier studies using the U.S. Naval Observatory, Flagstaff Station 40-inch Ritchey telescope to provide near-real-time astrometric and photometric information for use by the Navy Prototype Optical Interferometer (NPOI) team in its efforts to obtain interferometric fringes of geosynchronous satellites during a glint episode. The combined observations culminated in successful fringe measurements of DirecTV-9S during the vernal equinox 2008 and 2009 seasons (see Armstrong, et al. 2009, this conference). For our 40-inch telescope observations we used an LN2-cooled 2048x2048 CCD with standard R-band and H-alpha photometric filters, covering an area of the sky of approximately 22x22 arcmin with each integration. Observations typically were initiated well before a predicted potential glint and continued through the glint occurrence (if any) for our secondary goal of estimating peak glint brightnesses. As we were using photometric equipment, took care to obtain photometric calibrations, and were fortunate to have observed on several photometric nights, we have calibrated, time-resolved observations of numerous glint episodes, dominated by the GE2/GE4/DTV4S/DTV9S constellation. In particular, we will discuss systematic differences between glints from different satellites, comparison of glints from the same satellite during different epochs, and the time evolution of glints from DirecTV-9S during the 2009 vernal equinox observing season.

A Mathematical Description of the PULSAR Doppler Satellite Tracking Data Editor.

DTIC Science & Technology

1982-09-01

D .2.2 Position Derivatives of the Atmospheric Drag Acceleration:9r (con’t) v ( X r (i 1,2,3) (29) j=1’ k=1 re c. is the Levi - Civita density defined...obliquity of the ecliptic. The ecliptic intersects the celestial equator at two points called the vernal equinox and the autumnal equinox, i.e. the...direction to the earth’s rotation and has a period of approximately 26,000 years. , This conical motion is usually treated as the sum of two components

Three Dimensional Orbital Stability About the Earth-Moon Equilateral Libration Points.

DTIC Science & Technology

1980-12-01

need to be rotated to the ecliptic . If e is the obliquity of the ecliptic , then the transformation matrix for this is: t F e, ’ C]u 11E -12 IF I) I...the use of the above transformation matrix. The frame for the analysis of the problem will be an Earth-centered ecliptic nonrotating rectangular system...The X-axis will point toward the vernal equinox and the Z-axis will be perpendicular to the ecliptic having the XY-plane coincident with the ecliptic

Capturing sequence variation among flowering-time regulatory gene homologs in the allopolyploid crop species Brassica napus

PubMed Central

Schiessl, Sarah; Samans, Birgit; Hüttel, Bruno; Reinhard, Richard; Snowdon, Rod J.

2014-01-01

Flowering, the transition from the vegetative to the generative phase, is a decisive time point in the lifecycle of a plant. Flowering is controlled by a complex network of transcription factors, photoreceptors, enzymes and miRNAs. In recent years, several studies gave rise to the hypothesis that this network is also strongly involved in the regulation of other important lifecycle processes ranging from germination and seed development through to fundamental developmental and yield-related traits. In the allopolyploid crop species Brassica napus, (genome AACC), homoeologous copies of flowering time regulatory genes are implicated in major phenological variation within the species, however the extent and control of intraspecific and intergenomic variation among flowering-time regulators is still unclear. To investigate differences among B. napus morphotypes in relation to flowering-time gene variation, we performed targeted deep sequencing of 29 regulatory flowering-time genes in four genetically and phenologically diverse B. napus accessions. The genotype panel included a winter-type oilseed rape, a winter fodder rape, a spring-type oilseed rape (all B. napus ssp. napus) and a swede (B. napus ssp. napobrassica), which show extreme differences in winter-hardiness, vernalization requirement and flowering behavior. A broad range of genetic variation was detected in the targeted genes for the different morphotypes, including non-synonymous SNPs, copy number variation and presence-absence variation. The results suggest that this broad variation in vernalization, clock and signaling genes could be a key driver of morphological differentiation for flowering-related traits in this recent allopolyploid crop species. PMID:25202314

Characteristics of Equatorial and Low-Latitude Plasma Irregularities as Investigated Using a Meridional Chain of Radio Experiments Over India

NASA Astrophysics Data System (ADS)

Sripathi, S.; Sreekumar, Sreeba; Banola, S.

2018-05-01

The characteristics of equatorial and low-latitude plasma irregularities are studied using a meridional chain of ionosondes located at Tirunelveli, Hyderabad, and Allahabad and Global Positioning System (GPS) receivers located at Tirunelveli, Mumbai, and Nagpur during the year 2015. The observations suggest that while stronger and longer duration of equatorial spread F irregularities occur in the postsunset sector during equinoxes and winter, they occur mostly in the postmidnight sector during summer, while being weaker in strength and shorter in duration. Further, the postsunset spread F occurs first at the equator followed by their occurrence at low latitudes during equinoxes and winter, while the postmidnight spread F during summer are found to be stronger and earlier at low latitudes followed by their occurrence at the equator. While plasma irregularities are observed by both the ionosondes and GPS receivers during both equinoxes and winter, it is observed mostly by the ionosondes during summer. The results further strengthen the view that while postsunset spread F in equinoxes and winter are generated by the equatorial processes, postmidnight spread F in the summer may be linked to the nonequatorial processes. The results also reemphasize the asymmetric distribution of plasma irregularities or scintillations during equinoxes wherein vernal (autumn) equinox shows more intense plasma irregularities than autumn (vernal) equinox during certain years. Also, using a larger data set of simultaneous GPS and ionosonde observations, the relationship of prereversal enhancement and strength of L-band scintillations with solar flux, Kp index, and equatorial electrojet strength are examined.

Sex and age differences in hibernation patterns of common hamsters: adult females hibernate for shorter periods than males.

PubMed

Siutz, Carina; Franceschini, Claudia; Millesi, Eva

2016-08-01

In this study, we investigated the timing and duration of hibernation as well as body temperature patterns in free-ranging common hamsters (Cricetus cricetus) with regard to sex and age differences. Body temperature was recorded using subcutaneously implanted data loggers. The results demonstrate that although immergence and vernal emergence sequences of sex and age groups resembled those of most hibernators, particularly adult females delayed hibernation onset until up to early January. Thus, in contrast to other hibernators, female common hamsters hibernated for shorter periods than males and correspondingly spent less time in torpor. These sex differences were absent in juvenile hamsters. The period between the termination of hibernation and vernal emergence varied among individuals but did not differ between the sex and age groups. This period of preemergence euthermy was related to emergence body mass: individuals that terminated hibernation earlier in spring and had longer euthermic phases prior to emergence started the active season in a better condition. In addition, males with longer periods of preemergence euthermy had larger testes at emergence. In conclusion, females have to rely on sufficient food stores but may adjust the use of torpor in relation to the available external energy reserves, whereas males show a more pronounced energy-saving strategy by hibernating for longer periods. Nonetheless, food caches seem to be important for both males and females as indicated by the euthermic preemergence phase and the fact that some individuals, mainly yearlings, emerged with a higher body mass than shortly before immergence in autumn.

Environmental Assessment for Improvements to Irrigation System and Land Application of Treated Wastewater Effluent at Existing Golf Course, Mountain Home AFB, Idaho

DTIC Science & Technology

2003-08-01

wilh !he National Environmental Polley Act, tOe CO\\moil on En \\oronmental Qu•hty r<gulatlons, and A!r force Instrucl!on .12-7001, tmplementrng the...d and further analysis under an En \\’lfOnmental lrnpact Statement is not required_ -Q"""’U~" Date Cornn:tander. 366~ Ftght~r Wmg FmalEA...originally conducted in 1990 and revised in 1995, indicated nine playas or vernal pools on Mountain Home AFB. Playas are areas of seasonal water

Environmental Impact Analysis Process. Final Environmental Impact Statement Supersonic Flight Operations in the Valentine Military Operations Area

DTIC Science & Technology

1983-11-04

Arizona, and the Uinta Basin Seismological Observatory near Vernal, Utah. The seismometer locations at Edwards AFB were on a quartz monzonite outcrop and a...sandstone and limestone section covered the seismometer array area. The array area at the Uinta Basin site consisted of fluviatile, friable, cross...ONuSU"a 00121� SUSCOMIMM oil &MMN OOllTVlCl OqMCA OSM A O&O T U.&L COal .a n od - pNOW I" ""I564-746- Congress of the ’United * atets C P*C•TO

Association of barley photoperiod and vernalization genes with QTLs for flowering time and agronomic traits in a BC2DH population and a set of wild barley introgression lines

PubMed Central

Wang, Gongwei; Schmalenbach, Inga; von Korff, Maria; Léon, Jens; Kilian, Benjamin; Rode, Jeannette

2010-01-01

The control of flowering time has important impacts on crop yield. The variation in response to day length (photoperiod) and low temperature (vernalization) has been selected in barley to provide adaptation to different environments and farming practices. As a further step towards unraveling the genetic mechanisms underlying flowering time control in barley, we investigated the allelic variation of ten known or putative photoperiod and vernalization pathway genes between two genotypes, the spring barley elite cultivar ‘Scarlett’ (Hordeum vulgare ssp. vulgare) and the wild barley accession ‘ISR42-8’ (Hordeum vulgare ssp. spontaneum). The genes studied are Ppd-H1, VRN-H1, VRN-H2, VRN-H3, HvCO1, HvCO2, HvGI, HvFT2, HvFT3 and HvFT4. ‘Scarlett’ and ‘ISR42-8’ are the parents of the BC2DH advanced backcross population S42 and a set of wild barley introgression lines (S42ILs). The latter are derived from S42 after backcrossing and marker-assisted selection. The genotypes and phenotypes in S42 and S42ILs were utilized to determine the genetic map location of the candidate genes and to test if these genes may exert quantitative trait locus (QTL) effects on flowering time, yield and yield-related traits in the two populations studied. By sequencing the characteristic regions of the genes and genotyping with diagnostic markers, the contrasting allelic constitutions of four known flowering regulation genes were identified as ppd-H1, Vrn-H1, vrn-H2 and vrn-H3 in ‘Scarlett’ and as Ppd-H1, vrn-H1, Vrn-H2 and a novel allele of VRN-H3 in ‘ISR42-8’. All candidate genes could be placed on a barley simple sequence repeat (SSR) map. Seven candidate genes (Ppd-H1, VRN-H2, VRN-H3, HvGI, HvFT2, HvFT3 and HvFT4) were associated with flowering time QTLs in population S42. Four exotic alleles (Ppd-H1, Vrn-H2, vrn-H3 and HvCO1) possibly exhibited significant effects on flowering time in S42ILs. In both populations, the QTL showing the strongest effect corresponded to Ppd-H1. Here, the exotic allele was associated with a reduction of number of days until flowering by 8.0 and 12.7%, respectively. Our data suggest that Ppd-H1, Vrn-H2 and Vrn-H3 may also exert pleiotropic effects on yield and yield-related traits. PMID:20155245

A seasonal study on the role of h'F/meridional winds in influencing the development of ESF irregularities over Indian sector

NASA Astrophysics Data System (ADS)

Sreekumar, Sreeba; Sripathi, S.

2017-08-01

In this paper, we present the seasonal variation of nighttime thermospheric meridional winds over Hyderabad as derived using dual ionosonde observations located at Tirunelveli (8.7°N, 77.7°E, Dip Lat = 0.3°N), an equatorial station and Hyderabad (17.38°N, 78.45°E, Dip Lat = 12°N), a low latitude station, respectively, over the period of April-December 2013 using h'F data as discussed in (Sreekumar and Sripathi, 2016). The calculated winds has been compared with HWM14 wind model. The results show that trends of the derived winds from the ionosonde h'F data matches well with model wind near to midnight hours in all the seasons. However, some dissimilarities were observed during early night hours. Especially, the poleward winds during early night hours for different seasons were not well reproduced by the model. Later, the study is extended to understand the role of meridional winds in causing the variability of ESF occurrence vis a vis h'F. The histogram analysis of h'F vs wind values just before ESF onset reveals that the most probable combination of wind and h'F on the ESF days are centered around 350 km and 50 m/s. Additionally, we also performed Superposed Epoch Analysis (SEA) based on longer and shorter duration ESF events. The analysis reveals the distinct differences in the longer and shorter duration ESF events of Summer and Autumn equinox where the values of h'F as well as meridional winds where such that a steep change in reduction of poleward winds prior to ESF onset supported the longer duration ESF events in both seasons. However, this steep reduction is not so significant for the shorter duration ESF events indicating that meridional winds could play a crucial role in extending the spread F durations in longer duration events. The observations clearly demonstrate the reduction of poleward wind velocities during vernal equinox as compared to Autumn equinox, where larger poleward winds were present around ESF onset times. These observations are consistent with the equinoctial asymmetry as seen during year 2013 where more number of ESF occurrences were observed during vernal equinox as compared to Autumn equinox. Additionally on seasonal basis, analysis of the significance of meridional wind magnitudes during scintillation and non scintillation days were performed. The result suggests that non scintillation days were characterized with larger poleward wind magnitudes than scintillation days during vernal equinox and summer season. However, such a trend was not seen in the Autumn equinox season. This might indicate the possible role of poleward meridional wind in reducing the number of scintillation occurences during this season in addition to weakening of PRE height.

Ecohydrology of seepage springs in an urban National Park

NASA Astrophysics Data System (ADS)

Knee, K.; Melone, J.; Friedel, B.; Fong, D.

2014-12-01

Shallow groundwater-fed seepage springs, also known as hypotelminorheic habitats, are found around the Washington, DC area, including in the George Washington Parkway, a National Park unit in northern Virginia. These springs differ from better-known vernal pools both in their hydrology and their ecology: because they are groundwater-fed, they are more resistant to drying out than vernal pools, and they harbor cave-adapted arthropod species including amphipods of the genus Stygobroumus. This project seeks to understand the ecohydrology of the hypotelminorheic habitats that support these species, some of which are endangered, and which comprise an important but underappreciated component of biodiversity in DC-area National Parks. Our study focuses on two hypotelminorheic habitats in the GW Parkway area and consists of three main components: (1) a weekly population census of Stygobroumus using multiple mark-recapture methodology, (2) weekly monitoring of dissolved radon, a tracer of groundwater discharge, as well as conductivity, dissolved oxygen, and pH, and (3) continuous logging of spring water temperature. This poster presents preliminary data from the Stygobroumus population census and explores how these animals may be affected by spring hydrology. Specifically, we use temperature, conductivity, radon activity and precipitation data from a nearby weather station to understand how the springs respond to episodic and seasonal variation in temperature, precipitation and groundwater seepage and how this affects Stygobromus populations. We also explore whether variations in Stygobromus counts reflect (1) active migration between the surficial spring and the larger subterranean habitat, or (2) passive flushing driven by groundwater discharge. Our results provide basic hydrologic data about a little-understood habitat type and will help managers protect Stygobromus in the urban park environment.

Arabidopsis thaliana VOZ (Vascular plant One-Zinc finger) transcription factors are required for proper regulation of flowering time

PubMed Central

Celesnik, Helena; Ali, Gul S.; Robison, Faith M.; Reddy, Anireddy S. N.

2013-01-01

Summary Transition to flowering in plants is tightly controlled by environmental cues, which regulate the photoperiod and vernalization pathways, and endogenous signals, which mediate the autonomous and gibberellin pathways. In this work, we investigated the role of two Zn2+-finger transcription factors, the paralogues AtVOZ1 and AtVOZ2, in Arabidopsis thaliana flowering. Single atvoz1-1 and atvoz2-1 mutants showed no significant phenotypes as compared to wild type. However, atvoz1-1 atvoz2-1 double mutant plants exhibited several phenotypes characteristic of flowering-time mutants. The double mutant displayed a severe delay in flowering, together with additional pleiotropic phenotypes. Late flowering correlated with elevated expression of FLOWERING LOCUS C (FLC), which encodes a potent floral repressor, and decreased expression of its target, the floral promoter FD. Vernalization rescued delayed flowering of atvoz1-1 atvoz2-1 and reversed elevated FLC levels. Accumulation of FLC transcripts in atvoz1-1 atvoz2-1 correlated with increased expression of several FLC activators, including components of the PAF1 and SWR1 chromatin-modifying complexes. Additionally, AtVOZs were shown to bind the promoter of MOS3/SAR3 and directly regulate expression of this nuclear pore protein, which is known to participate in the regulation of flowering time, suggesting that AtVOZs exert at least some of their flowering regulation by influencing the nuclear pore function. Complementation of atvoz1-1 atvoz2-1 with AtVOZ2 reversed all double mutant phenotypes, confirming that the observed morphological and molecular changes arise from the absence of functional AtVOZ proteins, and validating the functional redundancy between AtVOZ1 and AtVOZ2. PMID:23616927

The Genetic Control of Reproductive Development under High Ambient Temperature.

PubMed

Ejaz, Mahwish; von Korff, Maria

2017-01-01

Ambient temperature has a large impact on reproductive development and grain yield in temperate cereals. However, little is known about the genetic control of development under different ambient temperatures. Here, we demonstrate that in barley (Hordeum vulgare), high ambient temperatures accelerate or delay reproductive development depending on the photoperiod response gene PHOTOPERIOD1 (Ppd-H1) and its upstream regulator EARLY FLOWERING3 (HvELF3). A natural mutation in Ppd-H1 prevalent in spring barley delayed floral development and reduced the number of florets and seeds per spike, while the wild-type Ppd-H1 or a mutant Hvelf3 allele accelerated floral development and maintained the seed number under high ambient temperatures. High ambient temperature delayed the expression phase and reduced the amplitude of clock genes and repressed the floral integrator gene FLOWERING LOCUS T1 independently of the genotype. Ppd-H1-dependent variation in flowering time under different ambient temperatures correlated with relative expression levels of the BARLEY MADS-box genes VERNALIZATION1 (HvVRN1), HvBM3, and HvBM8 in the leaf. Finally, we show that Ppd-H1 interacts with regulatory variation at HvVRN1. Ppd-H1 only accelerated floral development in the background of a spring HvVRN1 allele with a deletion in the regulatory intron. The full-length winter Hvvrn1 allele was strongly down-regulated, and flowering was delayed by high temperatures irrespective of Ppd-H1 Our findings demonstrate that the photoperiodic and vernalization pathways interact to control flowering time and floret fertility in response to ambient temperature in barley. © 2017 American Society of Plant Biologists. All Rights Reserved.

The Genetic Control of Reproductive Development under High Ambient Temperature1[OPEN

PubMed Central

2017-01-01

Ambient temperature has a large impact on reproductive development and grain yield in temperate cereals. However, little is known about the genetic control of development under different ambient temperatures. Here, we demonstrate that in barley (Hordeum vulgare), high ambient temperatures accelerate or delay reproductive development depending on the photoperiod response gene PHOTOPERIOD1 (Ppd-H1) and its upstream regulator EARLY FLOWERING3 (HvELF3). A natural mutation in Ppd-H1 prevalent in spring barley delayed floral development and reduced the number of florets and seeds per spike, while the wild-type Ppd-H1 or a mutant Hvelf3 allele accelerated floral development and maintained the seed number under high ambient temperatures. High ambient temperature delayed the expression phase and reduced the amplitude of clock genes and repressed the floral integrator gene FLOWERING LOCUS T1 independently of the genotype. Ppd-H1-dependent variation in flowering time under different ambient temperatures correlated with relative expression levels of the BARLEY MADS-box genes VERNALIZATION1 (HvVRN1), HvBM3, and HvBM8 in the leaf. Finally, we show that Ppd-H1 interacts with regulatory variation at HvVRN1. Ppd-H1 only accelerated floral development in the background of a spring HvVRN1 allele with a deletion in the regulatory intron. The full-length winter Hvvrn1 allele was strongly down-regulated, and flowering was delayed by high temperatures irrespective of Ppd-H1. Our findings demonstrate that the photoperiodic and vernalization pathways interact to control flowering time and floret fertility in response to ambient temperature in barley. PMID:28049855

Corneal staining patterns in vernal keratoconjunctivitis: the new VKC-CLEK scoring scale.

PubMed

Leonardi, Andrea; Lazzarini, Daniela; La Gloria Valerio, Alvise; Scalora, Tania; Fregona, Iva

2018-01-24

To propose a new scoring system in the assessment of ocular surface epithelial damage in vernal keratoconjunctivitis (VKC). 25 consecutive patients with VKC (50 eyes) were evaluated using the Quality of Life in children with VKC (QUICK) questionnaire and objective clinical measures: fluorescein and lissamine green staining and cornea confocal microscopy (Heidelberg Retina Tomography 3). Oxford, Van Bljsterweld and a new system, the VKC-Collaborative Longitudinal Evaluation of Keratoconus study (CLEK) (VKC-CLEK) scores, were used to evaluate the epithelial damage after staining. Mean Oxford and VKC-CLEK scores were significantly different after fluorescein staining (P<0.001), but significantly correlated (P<0.001; r=0.649). The same data were obtained comparing Van Bljsterweld and VKC-CLEK after lissamine green staining (P<0.001; r=0.760). In patient with limbal VKC, a statistically significant difference was found comparing new VKC-CLEK scores and Oxford or Van Bljsterweld scores (P<0.001), but not in tarsal VKC. A statistically superior concordance was found between QUICK and VKC-CLEK scores compared with standard staining scores values (P<0.001). Oxford and Van Bijsterveld scores are not adequate for the evaluation of the epithelial damage in patients with limbal VKC because the staining patterns considered for these tests do not correspond to the staining patterns in patients with VKC. We propose a new scoring system, VKC-CLEK, to better evaluate both limbal and tarsal epithelial damage in patients with VKC. © Article author(s) (or their employer(s) unless otherwise stated in the text of the article) 2018. All rights reserved. No commercial use is permitted unless otherwise expressly granted.

Climatology of GW-TIDs in the magnetic equatorial upper thermosphere over India

NASA Astrophysics Data System (ADS)

Manju, G.; Aswathy, R. P.

2017-11-01

An analysis of Gravity wave induced travelling ionospheric disturbances (GW-TIDs) in the thermosphere during high and low solar epochs is undertaken using ionosonde data at Trivandrum (8.50N, 770E). Wavelet analysis is performed on the temporal variations of foF2 and the amplitudes of waves present in two period bands of (0.5-1.5) h and (2-4) h are extracted. The real height profiles are generated at 15 min internal for the whole day (for sample days) during high and low solar activity years. The study reveals that the GW-TID activity is significantly greater for solar minimum compared to solar maximum for the period 8.5-17.5 h. Diurnally the GW-TID activity in the (2-4) h period band peaks in the post sunset hours for both high and low solar epochs. For the 0.5-1.5 h period band, the diurnal maximum in GW-TID is occurring in the post sunset hours for high solar epoch while it occurs in the morning hours around 10 h LT for low solar epoch. Seasonally the day time GW-TID activity maximizes (minimizes) for winter (vernal equinox). The post sunset time GW-TID maximizes (minimizes) either for summer/winter (vernal equinox). The other interesting observation is the anti correlation of GW-TID in upper thermosphere with solar activity for day time and the correlation of the same with solar activity in the post sunset hours. The present results for daytime are in agreement with the equatorial daytime GW-TID behaviour reported from CHAMP satellite observations. The GW-TID activity during post sunset time for equatorial region upper thermosphere has not been reported so far.

Anthropogenic Mercury Accumulation in Watersheds of the Northern Appalachian Mountains

NASA Astrophysics Data System (ADS)

Boyer, E. W.; Drohan, P. J.; Lawler, D.; Grimm, J.; Grant, C.; Eklof, K. J.; Bennett, J.; Naber, M. D.

2014-12-01

Atmospheric deposition of mercury (Hg) is a critical environmental stress that affects ecosystems and human health. Mercury emissions to the atmosphere from coal-fired power plants and other sources such as waste incineration can be deposited over large geographic areas to downwind landscapes in precipitation and in dry fallout. The northern Appalachian Mountains are downwind of major atmospheric mercury emissions sources. Some mercury reaches watersheds and streams, where it can accumulate in sediments and biota. Human exposure to mercury occurs primarily through fish consumption, and currently mercury fish eating advisories are in place for many of the streams and lakes in the region. Here, we explored mercury accumulation in forested landscapes - in air, soils, water, and biota. To quantify atmospheric mercury deposition, we measured both wet and dry mercury deposition at 10 forested locations, from which we present variation in mercury deposition and initial assessments of factors affecting the patterns. To quantify mercury accumulation in terrestrial environments, we measured soil mercury concentrations within and surrounding 12 vernal pools spanning various physiographic settings in the region. Given that vernal pools have large inputs of water via precipitation yet do not have any stream discharge outflow, they are likely spots within the forested landscape to accumulate pollutants that enter via wet atmospheric deposition. To quantify mercury accumulation in aquatic environments, we sampled mercury concentrations in streams draining 35 forested watersheds, spanning gradients of atmospheric deposition, climate and geology. Mercury concentrations were measured in stream water under base-flow conditions, in streambed sediments, aquatic mosses, and in fish tissues from brook trout. Results indicate that wet and dry atmospheric deposition is a primary source of mercury that is accumulating in watersheds of the Northern Appalachian Mountains.

Aquarius-Pisces Constellation Boundary Update

NASA Astrophysics Data System (ADS)

Durst, Steve

2017-06-01

Observation, mapping and study of Galaxy Stars has provided humanity direction, foundation, clarity and understanding through the ages.Human civilization advances itself using increasing intelligence and knowledge to develop tools and know how, the science of constellation star maps included: All that has been created by humanity, is to serve humanity.When people continue to use constellation star maps that no longer serve people effectively, the maps are updated, as is now the Aquarius-Pisces Constellation Boundary Update (APCBU), which marks 2000 as the year the Sun is in Aquarius at the vernal equinox.The 21st Century APCBU accounts for and incorporates science factors of precession, relativity and galacticity for professional astronomers, and social imperatives of increasing freedom, liberation and egalitarian culture for the 7.5 billion people of Earth.Twenty years into this first century of a new millennium and a new age is an effective time for an APCBU of such elegant simplicity that it changes less than 0.1% of the area of the IAU 1930 official constellation map, which marks 2597 about the year the Sun is in Aquarius at the time of the vernal equinox.The 21st Century APCBU results provide clarity and direction for humanity's next 2,000 years, if not 10,000 or 12,000 years, and advance the official astronomy / science start of the Aquarius Age -- long anticipated, desired, and imperative, especially in America -- by some 600 years.How much attention is increasingly focused on this region of the sky -- such as the recent discovery of 7 Earth-like worlds orbiting the Trappist-1 star in the Aquarius constellation -- will be an epochal 21st Century phenomenon of human science, society, and starlife.

Induction of DREB2A pathway with repression of E2F, jasmonic acid biosynthetic and photosynthesis pathways in cold acclimation-specific freeze-resistant wheat crown.

PubMed

Karki, Amrit; Horvath, David P; Sutton, Fedora

2013-03-01

Winter wheat lines can achieve cold acclimation (development of tolerance to freezing temperatures) and vernalization (delay in transition from vegetative to reproductive phase) in response to low non-freezing temperatures. To describe cold-acclimation-specific processes and pathways, we utilized cold acclimation transcriptomic data from two lines varying in freeze survival but not vernalization. These lines, designated freeze-resistant (FR) and freeze-susceptible (FS), were the source of crown tissue RNA. Well-annotated differentially expressed genes (p ≤ 0.005 and fold change ≥ 2 in response to 4 weeks cold acclimation) were used for gene ontology and pathway analysis. "Abiotic stimuli" was identified as the most enriched and unique for FR. Unique to FS was "cytoplasmic components." Pathway analysis revealed the "triacylglycerol degradation" pathway as significantly downregulated and common to both FR and FS. The most enriched of FR pathways was "neighbors of DREB2A," with the highest positive median fold change. The "13-LOX and 13-HPL" and the "E2F" pathways were enriched in FR only with a negative median fold change. The "jasmonic acid biosynthesis" pathway and four "photosynthetic-associated" pathways were enriched in both FR and FS but with a more negative median fold change in FR than in FS. A pathway unique to FS was "binding partners of LHCA1," which was enriched only in FS with a significant negative median fold change. We propose that the DREB2A, E2F, jasmonic acid biosynthesis, and photosynthetic pathways are critical for discrimination between cold-acclimated lines varying in freeze survival.

Use of transcriptome sequencing to understand the pistillate flowering in hickory (Carya cathayensis Sarg.).

PubMed

Huang, You-Jun; Liu, Li-Li; Huang, Jian-Qin; Wang, Zheng-Jia; Chen, Fang-Fang; Zhang, Qi-Xiang; Zheng, Bing-Song; Chen, Ming

2013-10-10

Different from herbaceous plants, the woody plants undergo a long-period vegetative stage to achieve floral transition. They then turn into seasonal plants, flowering annually. In this study, a preliminary model of gene regulations for seasonal pistillate flowering in hickory (Carya cathayensis) was proposed. The genome-wide dynamic transcriptome was characterized via the joint-approach of RNA sequencing and microarray analysis. Differential transcript abundance analysis uncovered the dynamic transcript abundance patterns of flowering correlated genes and their major functions based on Gene Ontology (GO) analysis. To explore pistillate flowering mechanism in hickory, a comprehensive flowering gene regulatory network based on Arabidopsis thaliana was constructed by additional literature mining. A total of 114 putative flowering or floral genes including 31 with differential transcript abundance were identified in hickory. The locations, functions and dynamic transcript abundances were analyzed in the gene regulatory networks. A genome-wide co-expression network for the putative flowering or floral genes shows three flowering regulatory modules corresponding to response to light abiotic stimulus, cold stress, and reproductive development process, respectively. Totally 27 potential flowering or floral genes were recruited which are meaningful to understand the hickory specific seasonal flowering mechanism better. Flowering event of pistillate flower bud in hickory is triggered by several pathways synchronously including the photoperiod, autonomous, vernalization, gibberellin, and sucrose pathway. Totally 27 potential flowering or floral genes were recruited from the genome-wide co-expression network function module analysis. Moreover, the analysis provides a potential FLC-like gene based vernalization pathway and an 'AC' model for pistillate flower development in hickory. This work provides an available framework for pistillate flower development in hickory, which is significant for insight into regulation of flowering and floral development of woody plants.

Use of transcriptome sequencing to understand the pistillate flowering in hickory (Carya cathayensis Sarg.)

PubMed Central

2013-01-01

Background Different from herbaceous plants, the woody plants undergo a long-period vegetative stage to achieve floral transition. They then turn into seasonal plants, flowering annually. In this study, a preliminary model of gene regulations for seasonal pistillate flowering in hickory (Carya cathayensis) was proposed. The genome-wide dynamic transcriptome was characterized via the joint-approach of RNA sequencing and microarray analysis. Results Differential transcript abundance analysis uncovered the dynamic transcript abundance patterns of flowering correlated genes and their major functions based on Gene Ontology (GO) analysis. To explore pistillate flowering mechanism in hickory, a comprehensive flowering gene regulatory network based on Arabidopsis thaliana was constructed by additional literature mining. A total of 114 putative flowering or floral genes including 31 with differential transcript abundance were identified in hickory. The locations, functions and dynamic transcript abundances were analyzed in the gene regulatory networks. A genome-wide co-expression network for the putative flowering or floral genes shows three flowering regulatory modules corresponding to response to light abiotic stimulus, cold stress, and reproductive development process, respectively. Totally 27 potential flowering or floral genes were recruited which are meaningful to understand the hickory specific seasonal flowering mechanism better. Conclusions Flowering event of pistillate flower bud in hickory is triggered by several pathways synchronously including the photoperiod, autonomous, vernalization, gibberellin, and sucrose pathway. Totally 27 potential flowering or floral genes were recruited from the genome-wide co-expression network function module analysis. Moreover, the analysis provides a potential FLC-like gene based vernalization pathway and an 'AC’ model for pistillate flower development in hickory. This work provides an available framework for pistillate flower development in hickory, which is significant for insight into regulation of flowering and floral development of woody plants. PMID:24106755

Microarray-based IgE detection in tears of patients with vernal keratoconjunctivitis.

PubMed

Leonardi, Andrea; Borghesan, Franco; Faggian, Diego; Plebani, Mario

2015-11-01

A specific allergen sensitization can be demonstrated in approximately half of the vernal keratoconjunctivitis (VKC) patients by conventional allergic tests. The measurement of specific IgE in tears using a multiplex allergen microarray may offer advantages to identify local sensitization to a specific allergen. In spring-summer 2011, serum and tears samples were collected from 10 active VKC patients (three females, seven males) and 10 age-matched normal subjects. Skin prick test, symptoms score and full ophthalmological examination were performed. Specific serum and tear IgE were assayed using ImmunoCAP ISAC, a microarray containing 103 components derived from 47 allergens. Normal subjects resulted negative for the presence of specific IgE both in serum and in tears. Of the 10 VKC patients, six resulted positive to specific IgE in serum and/or tears. In three of these six patients, specific IgE was found positive only in tears. Cross-reactivity between specific markers was found in three patients. Grass, tree, mites, animal but also food allergen-specific IgE were found in tears. Conjunctival provocation test performed out of season confirmed the specific local conjunctival reactivity. Multiple specific IgE measurements with single protein allergens using a microarray technique in tear samples are a useful, simple and non-invasive diagnostic tool. ImmunoCAP ISAC detects allergen sensitization at component level and adds important information by defining both cross- and co-sensitization to a large variety of allergen molecules. The presence of specific IgE only in tears of VKC patients reinforces the concept of possible local sensitization. © 2015 John Wiley & Sons A/S. Published by John Wiley & Sons Ltd.

The high-quality genome of Brassica napus cultivar 'ZS11' reveals the introgression history in semi-winter morphotype.

PubMed

Sun, Fengming; Fan, Guangyi; Hu, Qiong; Zhou, Yongming; Guan, Mei; Tong, Chaobo; Li, Jiana; Du, Dezhi; Qi, Cunkou; Jiang, Liangcai; Liu, Weiqing; Huang, Shunmou; Chen, Wenbin; Yu, Jingyin; Mei, Desheng; Meng, Jinling; Zeng, Peng; Shi, Jiaqin; Liu, Kede; Wang, Xi; Wang, Xinfa; Long, Yan; Liang, Xinming; Hu, Zhiyong; Huang, Guodong; Dong, Caihua; Zhang, He; Li, Jun; Zhang, Yaolei; Li, Liangwei; Shi, Chengcheng; Wang, Jiahao; Lee, Simon Ming-Yuen; Guan, Chunyun; Xu, Xun; Liu, Shengyi; Liu, Xin; Chalhoub, Boulos; Hua, Wei; Wang, Hanzhong

2017-11-01

Allotetraploid oilseed rape (Brassica napus L.) is an agriculturally important crop. Cultivation and breeding of B. napus by humans has resulted in numerous genetically diverse morphotypes with optimized agronomic traits and ecophysiological adaptation. To further understand the genetic basis of diversification and adaptation, we report a draft genome of an Asian semi-winter oilseed rape cultivar 'ZS11' and its comprehensive genomic comparison with the genomes of the winter-type cultivar 'Darmor-bzh' as well as two progenitors. The integrated BAC-to-BAC and whole-genome shotgun sequencing strategies were effective in the assembly of repetitive regions (especially young long terminal repeats) and resulted in a high-quality genome assembly of B. napus 'ZS11'. Within a short evolutionary period (~6700 years ago), semi-winter-type 'ZS11' and the winter-type 'Darmor-bzh' maintained highly genomic collinearity. Even so, certain genetic differences were also detected in two morphotypes. Relative to 'Darmor-bzh', both two subgenomes of 'ZS11' are closely related to its progenitors, and the 'ZS11' genome harbored several specific segmental homoeologous exchanges (HEs). Furthermore, the semi-winter-type 'ZS11' underwent potential genomic introgressions with B. rapa (A r ). Some of these genetic differences were associated with key agronomic traits. A key gene of A03.FLC3 regulating vernalization-responsive flowering time in 'ZS11' was first experienced HE, and then underwent genomic introgression event with A r , which potentially has led to genetic differences in controlling vernalization in the semi-winter types. Our observations improved our understanding of the genetic diversity of different B. napus morphotypes and the cultivation history of semi-winter oilseed rape in Asia. © 2017 The Authors The Plant Journal © 2017 John Wiley & Sons Ltd.

Stomatal vs. genome size in angiosperms: the somatic tail wagging the genomic dog?

PubMed Central

Hodgson, J. G.; Sharafi, M.; Jalili, A.; Díaz, S.; Montserrat-Martí, G.; Palmer, C.; Cerabolini, B.; Pierce, S.; Hamzehee, B.; Asri, Y.; Jamzad, Z.; Wilson, P.; Raven, J. A.; Band, S. R.; Basconcelo, S.; Bogard, A.; Carter, G.; Charles, M.; Castro-Díez, P.; Cornelissen, J. H. C.; Funes, G.; Jones, G.; Khoshnevis, M.; Pérez-Harguindeguy, N.; Pérez-Rontomé, M. C.; Shirvany, F. A.; Vendramini, F.; Yazdani, S.; Abbas-Azimi, R.; Boustani, S.; Dehghan, M.; Guerrero-Campo, J.; Hynd, A.; Kowsary, E.; Kazemi-Saeed, F.; Siavash, B.; Villar-Salvador, P.; Craigie, R.; Naqinezhad, A.; Romo-Díez, A.; de Torres Espuny, L.; Simmons, E.

2010-01-01

Background and Aims Genome size is a function, and the product, of cell volume. As such it is contingent on ecological circumstance. The nature of ‘this ecological circumstance’ is, however, hotly debated. Here, we investigate for angiosperms whether stomatal size may be this ‘missing link’: the primary determinant of genome size. Stomata are crucial for photosynthesis and their size affects functional efficiency. Methods Stomatal and leaf characteristics were measured for 1442 species from Argentina, Iran, Spain and the UK and, using PCA, some emergent ecological and taxonomic patterns identified. Subsequently, an assessment of the relationship between genome-size values obtained from the Plant DNA C-values database and measurements of stomatal size was carried out. Key Results Stomatal size is an ecologically important attribute. It varies with life-history (woody species < herbaceous species < vernal geophytes) and contributes to ecologically and physiologically important axes of leaf specialization. Moreover, it is positively correlated with genome size across a wide range of major taxa. Conclusions Stomatal size predicts genome size within angiosperms. Correlation is not, however, proof of causality and here our interpretation is hampered by unexpected deficiencies in the scientific literature. Firstly, there are discrepancies between our own observations and established ideas about the ecological significance of stomatal size; very large stomata, theoretically facilitating photosynthesis in deep shade, were, in this study (and in other studies), primarily associated with vernal geophytes of unshaded habitats. Secondly, the lower size limit at which stomata can function efficiently, and the ecological circumstances under which these minute stomata might occur, have not been satisfactorally resolved. Thus, our hypothesis, that the optimization of stomatal size for functional efficiency is a major ecological determinant of genome size, remains unproven. PMID:20375204

Developmental transcriptome analysis of floral transition in Rosa odorata var. gigantea.

PubMed

Guo, Xuelian; Yu, Chao; Luo, Le; Wan, Huihua; Zhen, Ni; Li, Yushu; Cheng, Tangren; Wang, Jia; Pan, Huitang; Zhang, Qixiang

2018-05-07

Expression analyses revealed that floral transition of Rosa odorata var. gigantea is mainly regulated by VRN1, COLs, DELLA and KSN, with contributions by the effects of phytohormone and starch metabolism. Seasonal plants utilize changing environmental and developmental cues to control the transition from vegetative growth to flowering at the correct time of year. This study investigated global gene expression profiles at different developmental stages of Rosa odorata var. gigantea by RNA-sequencing, combined with phenotypic characterization and physiological changes. Gene ontology enrichment analysis of the differentially expressed genes (DEGs) between four different developmental stages (vegetative meristem, pre-floral meristem, floral meristem and secondary axillary buds) indicated that DNA methylation and the light reaction played a large role in inducing the rose floral transition. The expression of SUF and FLC, which are known to play a role in delaying flowering until vernalization, was down-regulated from the vegetative to the pre-floral meristem stage. In contrast, the expression of VRN1, which promotes flowering by repressing FLC expression, increased. The expression of DELLA proteins, which function as central nodes in hormone signaling pathways, and probably involve interactions between GA, auxin, and ABA to promote the floral transition, was well correlated with the expression of floral integrators, such as AGL24, COL4. We also identified DEGs associated with starch metabolism correlated with SOC1, AGL15, SPL3, AGL24, respectively. Taken together, our results suggest that vernalization and photoperiod are prominent cues to induce the rose floral transition, and that DELLA proteins also act as key regulators. The results summarized in the study on the floral transition of the seasonal rose lay a foundation for further functional demonstration, and have profound economic and ornamental values.

Evaluation of retinal nerve fiber layer thickness in vernal keratoconjunctivitis patients under long-term topical corticosteroid therapy.

PubMed

Cingu, Abdullah Kursat; Cinar, Yasin; Turkcu, Fatih Mehmet; Sahinoglu-Keskek, Nedime; Sahin, Alparslan; Sahin, Muhammed; Yuksel, Harun; Caca, Ihsan

2014-09-01

The aim of this study was to evaluate the retinal nerve fiber layer (RNFL) thickness in vernal keratoconjunctivitis (VKC) patients who were under long-term topical corticosteroid therapy. Thirty-six eyes of 36 VKC patients with clear cornea and normal videokeratography and 40 eyes of 40 age- and gender-matched normal children were included in the study. Clinical and demographic characteristics of the patients were noted and detailed ophthalmological examination was performed. Visual acuity (VA), spherical equivalent (SE), axial length (AL) and RNFL thickness measurements were compared between the groups. To correct ocular magnification effect on RNFL, we used Littmann's formula. All VKC patients had history of topical corticosteroid use and the mean duration of the topical corticosteroid use was 23.8 ± 9.09 months. There was no significant difference between the groups in terms of intraocular pressure (IOP). VKC group had significantly worse VA, greater SE and AL and thinner mean global, superior and inferior RNFL thickness. There were significant negative correlations between the duration of topical corticosteroid use and the mean global, superior and temporal RNFL thickness in VKC group. After correction of magnification effect, VKC group still had thinner mean global, superior and inferior RNFL thickness, and significant difference between the groups in inferior RNFL thickness did not disappear. Significant RNFL thickness difference between the groups suggests a possible effect of long-term corticosteroid use in VKC patients. Because visual field (VF) analysis in pediatric patients is difficult to perform and IOP may be illusive, RNFL thickness measurements in addition to routine examinations in VKC patients may help clinicians in their practice.

A single haplotype hyposensitive to light and requiring strong vernalization dominates Arabidopsis thaliana populations in Patagonia, Argentina.

PubMed

Kasulin, Luciana; Rowan, Beth A; León, Rolando J C; Schuenemann, Verena J; Weigel, Detlef; Botto, Javier F

2017-07-01

The growing collection of sequenced or genotyped Arabidopsis thaliana accessions includes mostly individuals from the native Eurasian and N. African range and introduced North American populations. Here, we describe the genetic and phenotypic diversity, along with habitats and life history, of A. thaliana plants collected at the southernmost end of its worldwide distribution. Seed samples were harvested from plants growing in four sites within a ~3500-km 2 -area in Patagonia, Argentina, and represent the first germplasm to be collected in South America for this species. Whole-genome resequencing revealed that plants from the four sites and a Patagonia herbarium specimen collected in 1967 formed a single haplogroup (Pat), indicating that the phenotypic variation observed in the field reflected plastic responses to the environment. admixture and principal components analyses suggest that the ancestor of the Pat haplogroup either came from Italy or the Balkan/Caucasus regions of Eurasia. In the laboratory, plants from the Pat haplogroup were hyposensitive to continuous red (Rc) and shade light, with corresponding changes in the expression of phytochrome signalling genes. Pat had higher PIF3 and PIF5 and lower HY5 expression under Rc light; and lower expression of PIL1, ATHB2 and HFR1 under shade compared to Col-0. In addition, Pat plants had a strong vernalization requirement associated with high levels of FLC expression. We conclude that including Pat in studies of natural variation and in comparison with other introduced populations will provide additional information for association studies and allow for a more detailed assessment of the demographic events following colonization. © 2017 John Wiley & Sons Ltd.

Epigenetic Regulation in Plant Responses to the Environment

PubMed Central

Baulcombe, David C.; Dean, Caroline

2014-01-01

In this article, we review environmentally mediated epigenetic regulation in plants using two case histories. One of these, vernalization, mediates adaptation of plants to different environments and it exemplifies processes that are reset in each generation. The other, virus-induced silencing, involves transgenerationally inherited epigenetic modifications. Heritable epigenetic marks may result in heritable phenotypic variation, influencing fitness, and so be subject to natural selection. However, unlike genetic inheritance, the epigenetic modifications show instability and are influenced by the environment. These two case histories are then compared with other phenomena in plant biology that are likely to represent epigenetic regulation in response to the environment. PMID:25183832

LED and Semiconductor Photo-effects on Living Things

NASA Astrophysics Data System (ADS)

Fujiyasu, Hiroshi; Ishigaki, Takemitsu; Fujiyasu, Kentarou; Ujihara, Shirou; Watanabe, Naoharu; Sunayama, Shunji; Ikoma, Shuuji

We have studied LED irradiation effects on plants and animals in the visible to UV region of light from GaN LEDs. The results are as follows. Blue light considers to be effective for pearl cultivation or for attraction of small fishes living in near the surface of sea such as Pompano or Sardine, white light radiation is effective for cultivation of botanical plankton for shells. Other experiments of UV light irradiation attracting effect on baby sea turtle and the germination UV effect of mushroom, green light weight enhance effect on baby pigs, light vernalization effect of vegitable and Ge far infrared therapic effect on human body are also given.

Applied regional monitoring of the vernal advancement and retrogradation (Green wave effect) of natural vegetation in the Great Plains corridor. [Texas and Oklahoma

NASA Technical Reports Server (NTRS)

Rouse, J. W., Jr. (Principal Investigator)

1976-01-01

The author has identified the following significant results. A TV16 isoline map at the 6.25 million hectare extended test site area in north central Texas and southern Oklahoma was produced. The map was compared to a published USDA Statistical Reporting Service map, which shows pasture and range feed conditions, as reported by rancher respondents. Both maps show similar areas of drought stress and good to excellent forage conditions, but preliminary indications are that the LANDSAT-derived map more accurately depicts the areal extent of each condition class.

Cyclosporine A delivery to the eye: A comprehensive review of academic and industrial efforts.

PubMed

Lallemand, Frédéric; Schmitt, Mathieu; Bourges, Jean-Louis; Gurny, Robert; Benita, Simon; Garrigue, Jean-Sébastien

2017-08-01

Local ocular delivery of cyclosporine A (CsA) is the preferred method for CsA delivery as a treatment for ocular inflammatory diseases such as uveitis, corneal healing, vernal keratoconjunctivitis and dry eye disease. However, due to the large molecular weight and hydrophobic nature of CsA and the natural protective mechanisms of the eye, achieving therapeutic levels of CsA in ocular tissues can be difficult. This review gives a comprehensive overview of the current products available to clinicians as well as emerging drug delivery solutions that have been developed at both the academic and industry levels. Copyright © 2017 The Authors. Published by Elsevier B.V. All rights reserved.

Allergic conjunctivitis: a comprehensive review of the literature

PubMed Central

2013-01-01

Ocular allergy represents one of the most common conditions encountered by allergists and ophthalmologists. Allergic conjunctivitis is often underdiagnosed and consequently undertreated. Basic and clinical research has provided a better understanding of the cells, mediators, and immunologic events, which occur in ocular allergy. New pharmacological agents have improved the efficacy and safety of ocular allergy treatment. An understanding of the immunologic mechanisms, clinical features, differential diagnosis, and treatment of ocular allergy may be useful to all specialists who deal with these patients. The purpose of this review is to systematically review literature underlining all the forms classified as ocular allergy: seasonal allergic conjunctivitis, perennial allergic conjunctivitis, vernal keratoconjunctivitis, atopic keratocongiuntivitis, contact allergy, and giant papillary conjunctivitis. PMID:23497516

Titan's seasonal weather patterns, associated surface modification, and geological implications

NASA Astrophysics Data System (ADS)

Turtle, E. P.; Perry, J. E.; Barnes, J. W.; McEwen, A. S.; Barbara, J. M.; Del Genio, A. D.; Hayes, A. G.; West, R. A.; Lorenz, R. D.; Schaller, E. L.; Lunine, J. I.; Ray, T. L.; Lopes, R. M. C.; Stofan, E. R.

2013-09-01

Model predictions [e.g., 1-3] and observations [e.g., 4,5] illustrate changes in Titan's weather patterns related to the seasons (Fig. 1). In two cases, surface changes were documented following large cloud outbursts (Figs. 2, 3): the first in Arrakis Planitia at high southern latitudes in Fall 2004, during Titan's late southern summer [6]; and the second at lows southern latitudes in Concordia and Hetpet Regiones, Yalaing Terra (Fig. 3), and Adiri, in Fall 2010, just over a year after Titan's northern vernal equinox [4, 7, 8]. Not only do these storms demonstrate Titan's atmospheric conditions and processes, they also have important implications for Titan's surface process, its methane cycle, and its geologic history.

Monitoring the Vernal Advancement and Retrogradation (Green Wave Effect) of Natural Vegetation. [Great Plains Corridor

NASA Technical Reports Server (NTRS)

Rouse, J. W., Jr. (Principal Investigator); Haas, R. H.; Deering, D. W.; Schell, J. A.; Harlan, J. C.

1974-01-01

The author has identified the following significant results. The Great Plains Corridor rangeland project successfully utilized natural vegetation systems as phenological indicators of seasonal development and climatic effects upon regional growth conditions. An effective method was developed for quantitative measurement of vegetation conditions, including green biomass estimates, recorded in bands 5 and 6, corrected for sun angle, were used to compute a ratio parameter (TV16) which is shown to be highly correlated with green biomass and vegatation moisture content. Analyses results of ERTS-1 digital data and correlated ground data are summarized. Attention was given to analyzing weather influences and test site variables on vegetation condition measurements with ERTS-1 data.

Lunar ephemeris selenographic coordinates of the earth and sun for 1975 and 1976

NASA Technical Reports Server (NTRS)

Hartung, A. D.

1972-01-01

Ephemeris data are presented for 1975 and 1976 to provide a time history of lunar coordinates and related geometric information. A Manned Spacecraft Center modification of the Jet Propulsion Laboratory ephemeris tape was used to calculate and plot coordinates of the earth, moon, and sun. The ephemeris is referenced to the mean vernal equinox at the nearest beginning of a Besselian year. Therefore the reference equinox changes from one year to the next between 30 June and 1 July. The apparent discontinuity in the data is not noticeable in the graphical presentation, but can be observed in the digital output. The mean equator of epoch is used in all cases.

Atopy and serum eosinophil cationic protein in 110 white children with vernal keratoconjunctivitis: differences between tarsal and limbal forms.

PubMed

Pucci, N; Novembre, E; Lombardi, E; Cianferoni, A; Bernardini, R; Massai, C; Caputo, R; Campa, L; Vierucci, A

2003-03-01

A predominance of Th2 response has been suggested in vernal keratoconjunctivitis (VKC), and a high prevalence of IgE-sensitized (IgE-S) patients has been reported (positive skin prick test or serum-specific-IgE). Palpebral and bulbar VKC are considered to be expressions of the same disease and only occasional racial and histopathological differences are described between the two forms. Tear levels of eosinophil cationic proteins have been correlated with the severity of ocular symptoms; however, there is no published study that demonstrates the presence of serum markers of disease activity. This study was performed to evaluate the prevalence of IgE-sensitization in palpebral, bulbar and mixed VKC and to determine possible useful markers of disease activity in peripheral circulation. A total of 110 white VKC patients (mean age 8.3 years, range 3.2-18 years) were evaluated for ocular score in the active phase of the disease. Skin prick tests and serum-specific IgE for common allergens, serum-total IgE, peripheral blood eosinophil counts (PBECs) and serum eosinophil cationic protein (s-ECP) were determined. Fifteen age-matched non-IgE-S control children underwent the same determinations. s-ECP, PBECs and s-total IgE were significantly higher in IgE-S than in non-IgE-S VKC patients and in non-IgE-S VKC patients than in controls. A lower prevalence of IgE-S patients was found in bulbar vs. tarsal (P = 0. 050) or mixed forms (P = 0.002). The score of giant papillae was strongly correlated with s-ECP levels (P < 0.001) and with PBECs (P = 0.001). Our data suggest that an overall eosinophilic response is present in VKC independently of IgE-sensitization; bulbar forms, unlike tarsal and mixed forms, were associated with a low prevalence of IgE-sensitization. Serum ECP was a useful marker of disease activity in tarsal and mixed forms.

Genetic variation of temperature-regulated curd induction in cauliflower: elucidation of floral transition by genome-wide association mapping and gene expression analysis

PubMed Central

Matschegewski, Claudia; Zetzsche, Holger; Hasan, Yaser; Leibeguth, Lena; Briggs, William; Ordon, Frank; Uptmoor, Ralf

2015-01-01

Cauliflower (Brassica oleracea var. botrytis) is a vernalization-responsive crop. High ambient temperatures delay harvest time. The elucidation of the genetic regulation of floral transition is highly interesting for a precise harvest scheduling and to ensure stable market supply. This study aims at genetic dissection of temperature-dependent curd induction in cauliflower by genome-wide association studies and gene expression analysis. To assess temperature-dependent curd induction, two greenhouse trials under distinct temperature regimes were conducted on a diversity panel consisting of 111 cauliflower commercial parent lines, genotyped with 14,385 SNPs. Broad phenotypic variation and high heritability (0.93) were observed for temperature-related curd induction within the cauliflower population. GWA mapping identified a total of 18 QTL localized on chromosomes O1, O2, O3, O4, O6, O8, and O9 for curding time under two distinct temperature regimes. Among those, several QTL are localized within regions of promising candidate flowering genes. Inferring population structure and genetic relatedness among the diversity set assigned three main genetic clusters. Linkage disequilibrium (LD) patterns estimated global LD extent of r2 = 0.06 and a maximum physical distance of 400 kb for genetic linkage. Transcriptional profiling of flowering genes FLOWERING LOCUS C (BoFLC) and VERNALIZATION 2 (BoVRN2) was performed, showing increased expression levels of BoVRN2 in genotypes with faster curding. However, functional relevance of BoVRN2 and BoFLC2 could not consistently be supported, which probably suggests to act facultative and/or might evidence for BoVRN2/BoFLC-independent mechanisms in temperature-regulated floral transition in cauliflower. Genetic insights in temperature-regulated curd induction can underpin genetically informed phenology models and benefit molecular breeding strategies toward the development of thermo-tolerant cultivars. PMID:26442034

Heterologous expression of wheat VERNALIZATION 2 (TaVRN2) gene in Arabidopsis delays flowering and enhances freezing tolerance.

PubMed

Diallo, Amadou; Kane, Ndjido; Agharbaoui, Zahra; Badawi, Mohamed; Sarhan, Fathey

2010-01-13

The vernalization gene 2 (VRN2), is a major flowering repressor in temperate cereals that is regulated by low temperature and photoperiod. Here we show that the gene from Triticum aestivum (TaVRN2) is also regulated by salt, heat shock, dehydration, wounding and abscissic acid. Promoter analysis indicates that TaVRN2 regulatory region possesses all the specific responsive elements to these stresses. This suggests pleiotropic effects of TaVRN2 in wheat development and adaptability to the environment. To test if TaVRN2 can act as a flowering repressor in species different from the temperate cereals, the gene was ectopically expressed in the model plant Arabidopsis. Transgenic plants showed no alteration in morphology, but their flowering time was significantly delayed compared to controls plants, indicating that TaVRN2, although having no ortholog in Brassicaceae, can act as a flowering repressor in these species. To identify the possible mechanism by which TaVRN2 gene delays flowering in Arabidopsis, the expression level of several genes involved in flowering time regulation was determined. The analysis indicates that the late flowering of the 35S::TaVRN2 plants was associated with a complex pattern of expression of the major flowering control genes, FCA, FLC, FT, FVE and SOC1. This suggests that heterologous expression of TaVRN2 in Arabidopsis can delay flowering by modulating several floral inductive pathways. Furthermore, transgenic plants showed higher freezing tolerance, likely due to the accumulation of CBF2, CBF3 and the COR genes. Overall, our data suggests that TaVRN2 gene could modulate a common regulator of the two interacting pathways that regulate flowering time and the induction of cold tolerance. The results also demonstrate that TaVRN2 could be used to manipulate flowering time and improve cold tolerance in other species.

Copy number and haplotype variation at the VRN-A1 and central FR-A2 loci are associated with frost tolerance in hexaploid wheat.

PubMed

Zhu, Jie; Pearce, Stephen; Burke, Adrienne; See, Deven Robert; Skinner, Daniel Z; Dubcovsky, Jorge; Garland-Campbell, Kimberly

2014-05-01

The interaction between VRN - A1 and FR - A2 largely affect the frost tolerance of hexaploid wheat. Frost tolerance is critical for wheat survival during cold winters. Natural variation for this trait is mainly associated with allelic differences at the VERNALIZATION 1 (VRN1) and FROST RESISTANCE 2 (FR2) loci. VRN1 regulates the transition between vegetative and reproductive stages and FR2, a locus including several tandemly duplicated C-REPEAT BINDING FACTOR (CBF) transcription factors, regulates the expression of Cold-regulated genes. We identified sequence and copy number variation at these two loci among winter and spring wheat varieties and characterized their association with frost tolerance. We identified two FR-A2 haplotypes-'FR-A2-S' and 'FR-A2-T'-distinguished by two insertion/deletions and ten single nucleotide polymorphisms within the CBF-A12 and CBF-A15 genes. Increased copy number of CBF-A14 was frequently associated with the FR-A2-T haplotype and with higher CBF14 transcript levels in response to cold. Factorial ANOVAs revealed significant interactions between VRN1 and FR-A2 for frost tolerance in both winter and spring panels suggesting a crosstalk between vernalization and cold acclimation pathways. The model including these two loci and their interaction explained 32.0 and 20.7 % of the variation in frost tolerance in the winter and spring panels, respectively. The interaction was validated in a winter wheat F 4:5 population segregating for both genes. Increased VRN-A1 copy number was associated with improved frost tolerance among varieties carrying the FR-A2-T allele but not among those carrying the FR-A2-S allele. These results suggest that selection of varieties carrying the FR-A2-T allele and three copies of the recessive vrn-A1 allele would be a good strategy to improve frost tolerance in wheat.

Reproductive performance of donor mares subsequent to eFSH treatment in early vernal transition: Comparison between the first, second, and mid-season estrous cycles of the breeding season.

PubMed

Raz, Tal; Hunter, Barbara; Carley, Sylvia; Card, Claire

2009-11-01

The objective was to compare the reproductive performances associated with the first (Cycle-1), second (Cycle-2), and mid-season (MS-Cycle) ovulations of the breeding season in donor mares that were treated with equine-FSH (eFSH) in the early vernal transition. Mares (n=15) kept under ambient light were examined ultrasonographically per-rectum starting January 30. When an ovarian follicle > or =25mm in diameter was detected, twice daily eFSH treatments were initiated. The eFSH treatments ceased when a follicle > or =35mm was detected, and 36h later hCG was administered. Thereafter, mares were artificially inseminated every 48h until ovulation (Day 0). Trans-cervical embryo recovery attempts were performed on Day 8, and subsequently PGF2alpha was administered. Equine FSH was not administered in the subsequent estrous cycles. In Cycle-2 and in the MS-Cycle, hCG was administered when a follicle > or =35mm was detected; breeding, embryo recovery, and PGF2alpha administration, were similar to Cycle-1. Mares had an untreated estrous cycle (no treatment or breeding) between Cycle-2 and the MS-Cycle. All mares developed follicle(s) > or =35mm after 4.9+/-0.6 days of eFSH treatment, and subsequently ovulations occurred; mean (95% CI) interval from treatment initiation to ovulation was 7.9 (6.5-9.3) days. The number of preovulatory follicles (> or =30mm) at the time of hCG administration (Cycle-1: 2.2+/-0.3 compared with Cycle-2: 1.0+/-0 compared with MS-Cycle: 1.1+/-0.1 follicles), and the number of ovulations (2.5+/-0.4 compared with 1.0+/-0 compared with 1.1+/-0.1 ovulations) were greater (p<0.05) in Cycle-1. Nevertheless, mean embryo numbers did not differ among cycles (0.8+/-0.2 compared with 0.5+/-0.1 compared with 0.5+/-0.1 embryo/mare). On average, embryo morphology grade was less (p<0.05) in Cycle-1 as compared to non-eFSH cycles (combined Cycle-2 and MS-Cycle). This impaired embryo quality could be due to a seasonal effect, or negative effect of the eFSH treatment, which was possibly related to alterations in the hormonal environment (estradiol-17beta and progesterone). A prolonged IOI (>21 days) was recorded in 7 of 15 mares following the Cycle-1 ovulation, but not subsequently. In conclusion, eFSH treatment of vernal transitional donor mares stimulated ovulation within only few days of treatment, and the following embryo recovery rate was at least as good as in the subsequent estrous cycles; however, on average, embryos were morphologically impaired. In subsequent estrous cycles in the breeding season, ovulations, embryo recovery rates, and embryo variables did not appear to be negatively affected; however, the first inter-ovulatory interval of the breeding season was prolonged in approximately half of the mares.

The ice age cycle and the deglaciations: an application of nonlinear regression modelling

NASA Astrophysics Data System (ADS)

Dalgleish, A. N.; Boulton, G. S.; Renshaw, E.

2000-03-01

We have applied the nonlinear regression technique known as additivity and variance stabilisation (AVAS) to time series which reflect Earth's climate over the last 600 ka. AVAS estimates a smooth, nonlinear transform for each variable, under the assumption of an additive model. The Earth's orbital parameters and insolation variations have been used as regression variables. Analysis of the contribution of each variable shows that the deglaciations are characterised by periods of increasing obliquity and perihelion approaching the vernal equinox, but not by any systematic change in eccentricity. The magnitude of insolation changes also plays no role. By approximating the transforms we can obtain a future prediction, with a glacial maximum at 60 ka AP, and a subsequent obliquity and precession forced deglaciation.

Water-quality data at amphibian research sites in Maryland, Washington, D.C., and Virginia, 2005-2007

USGS Publications Warehouse

Rice, Karen C.

2008-01-01

Data on the chemical composition of water were collected at least once from 47 amphibian research sites in Maryland, Washington, D.C., and Virginia, from 2005 through 2007. One hundred twenty-five water samples were collected from vernal pools and streams and analyzed as part of long-term monitoring projects of the U.S. Geological Survey Amphibian Research and Monitoring Initiative in the Northeast Region. Field measurements of water temperature, specific conductance, and pH were made. Laboratory analyses of the water samples included acid-neutralizing capacity, total Kjeldahl nitrogen (ammonium plus organic nitrogen), nitrite plus nitrate, total nitrogen, and total phosphorus concentrations. Field and laboratory analytical results of water samples and quality-assurance data are presented.

Lunar ephemeris and selenographic coordinates of the earth and sun for 1971 and 1972

NASA Technical Reports Server (NTRS)

Hartung, A. D.

1972-01-01

Ephemeris data are presented for each month of 1971 and 1972 to provide a time history of lunar coordinates and related geometric information. A NASA Manned Spacecraft Center modification of the Jet Propulsion Laboratory ephemeris tape was used to calculate and plot coordinates of the earth, moon, and sun. The ephemeris is referenced to the mean vernal equinox at the nearest beginning of a Besselian year. Therefore, the reference equinox changes from one year to the next between 30 June and 1 July. The apparent discontinuity in the data is not noticeable in the graphical presentation, but can be observed in the digital output. The mean equator of epoch is used in all cases. The computer program used to compute and plot the ephemeris data is described.

Lunar ephemeris and selenographic coordinates of the earth and sun for 1979 and 1980

NASA Technical Reports Server (NTRS)

Hartung, A. D.

1972-01-01

Ephemeris data are presented in sections for each month for 1979 and 1980 to provide a time history of lunar coordinates and related geometric information. A NASA Manned Spacecraft Center modification of an ephemeris tape was used to calculate and plot coordinates of the earth, moon, and sun. The ephemeris is referenced to the mean vernal equinox at the nearest beginning of a Besselian year. Therefore, the reference equinox changes from one year to the next between 30 June and 1 July. The apparent discontinuity in the data is not noticeable in the graphical presentation, but can be observed in the digital output. The mean equator of epoch is used in all cases. The computer program used to compute and plot the ephemeris data is described in the appendix.

VizieR Online Data Catalog: 33 RR Lyrae observed in Pisces with K2-E2 (Molnar+, 2015)

NASA Astrophysics Data System (ADS)

Molnar, L.; Szabo, R.; Moskalik, P. A.; Nemec, J. M.; Guggenberger, E.; Smolec, R.; Poleski, R.; Plachy, E.; Kolenberg, K.; Kollath, Z.

2016-03-01

Kepler observed a stellar field around the vernal equinox point in Pisces (centre coordinates: RA=359°, DE=-2°) between 2014 February 04 and 13. The primary goal of this K2 Two-Wheel Concept Engineering Test (hereafter K2-E2) was to test the performance of the telescope in fine guidance mode. As well, the observations of nearly 2000 targets were made available for the scientific community. We identified 33 potential RR Lyrae stars in the K2-E2 sample and extracted their photometric data with the pyke software, developed for the Kepler mission by the Kepler Guest Observer Office (Still & Barclay, 2012, Astrophysics Source Code Library record ascl:1208.004). (6 data files).

Lunar ephemeris and selenographic coordinates of the earth and sun for 1983 and 1984

NASA Technical Reports Server (NTRS)

Hartung, A. D.

1972-01-01

Ephemeris data are presented in sections for each month for 1983 and 1984 to provide a time history of lunar coordinates and related geometric information. A NASA Manned Spacecraft Center modification of an ephemeris tape was used to calculate and plot coordinates of the earth, moon, and sun. The ephemeris is referenced to the mean vernal equinox at the nearest beginning of a Besselian year. Therefore, the reference equinox changes from one year to the next between 30 June and 1 July. The apparent discontinuity in the data is not noticeable in the graphical presentation, but can be observed in the digital output. The mean equator of epoch is used in all cases. The computer program used to compute and plot the ephemeris data is described in the appendix.

Lunar ephemeris and selenographic coordinates of the earth and sun for 1977 and 1978

NASA Technical Reports Server (NTRS)

Hartung, A. D.

1972-01-01

Ephemeris data are presented in sections for each month for 1977 and 1978 to provide a time history of lunar coordinates and related geometric information. A NASA Manned Spacecraft Center modification of an ephmeris tape was used to calculate and plot coordinates of the earth, moon, and sun. The ephemeris is referenced to the mean vernal equinox at the nearest beginning of a Besselian year. Therefore, the reference equinox changes from one year to the next between June 30 and July 1. The apparent discontinuity in the data is not noticeable in the graphical presentation, but can be observed in the digital output. The mean equator of epoch is used in all cases. The computer program used to compute and plot the ephemeris data is described in the appendix.

Lunar ephemeris and selenographic coordinates of the earth and sun for 1973 and 1974

NASA Technical Reports Server (NTRS)

Hartung, A. D.

1972-01-01

Ephemeris data are presented for each month of 1973 and 1974 to provide a time history of lunar coordinates and related geometric information. A NASA Manned Spacecraft Center modification of the Jet Propulsion Laboratory ephemeris tape was used to calculate and plot coordinates of the earth, moon, and sun. The ephemeris is referenced to the mean vernal equinox at the nearest beginning of a Besselian year. Therefore, the reference equinox changes from one year to the next between 30 June and 1 July. The apparent discontinuity in the data is not noticeable in the graphical presentation, but can be observed in the digital output. The mean equator of epoch is used in all cases. The computer program used to compute and plot the ephemeris data is described.

Increased prevalence of growth hormone deficiency in patients with vernal keratoconjuntivitis; an interesting new association.

PubMed

Stagi, Stefano; Pucci, Neri; di Grande, Laura; de Libero, Cinzia; Caputo, Roberto; Pantano, Stefano; Seminara, Salvatore; de Martino, Maurizio; Novembre, Elio

2014-01-01

Vernal keratoconjunctivitis (VKC) is a chronic conjunctivitis that mainly affects children living in temperate areas. The notable difference between genders and VKC's resolution with puberty have persistently suggested a role of hormonal factors in VKC development. To describe six cases of males with VKC and growth hormone deficiency (GHD) reported as a long-term follow-up during rhGH treatment. Six consecutive male patients (median age at GHD diagnosis 9.7, range 7.9 to 13.1 years) with VKC, were recruited from July 2005 to July 2013 at the Paediatric Endocrinology Unit of Anna Meyer Children's Hospital in Florence, Italy. In these patients, anthropometric data were collected periodically. In three of these patients, data were collected to near-adult or adult height. Familial history was uneventful for all patients. The target height was normal, ranging from 0.65 standard deviation scores (SDS) to 2.01 SDS. The patients showed a normal birth-weight (from -1.21 to 1.35 SDS) and birth-length (from -0.93 to 1.21 SDS). At GHD diagnosis, all of the patients exhibited demonstrated important growth retardation (from -2.05 to -2.78 SDS). Plasmatic concentrations of IGF-1 and IGFBP-3 were low (from -1.85 to -3 SDS and from -1.81 to -2.76 SDS, respectively). GH stimulation tests showed classic GHD symptoms in all of the patients. Pubertal onset was normal. All of the patients treated with rhGH responded well to rhGH treatment. Adult height, evaluated in three patients, was in accordance with their target height. To our current knowledge, we have described for the first time six patients affected by VKC with GH deficiency, in some of whom we performed a long-term follow-up to adult height. Further studies will be needed to establish whether GHD may be a common feature of VKC patients. Nevertheless, it appears to be useful to carefully follow statural growth of VKC patients, while the possibility of a GH deficiency must to be taken into account in the presence of growth failure.

Acute sensitivity of the vernal pool fairy shrimp, Branchinecta lynchi (Anostraca; Branchinectidae), and surrogate species to 10 chemicals

USGS Publications Warehouse

Ivey, Chris D.; Besser, John M.; Ingersoll, Christopher G.; Wang, Ning; Rogers, Christopher; Raimondo, Sandy; Bauer, Candice R.; Hammer, Edward J.

2017-01-01

Vernal pool fairy shrimp, Branchinecta lynchi, (Branchiopoda; Anostraca) and other fairy shrimp species have been listed as threatened or endangered under the US Endangered Species Act. Because few data exist about the sensitivity of Branchinecta spp. to toxic effects of contaminants, it is difficult to determine whether they are adequately protected by water quality criteria. A series of acute (24-h) lethality/immobilization tests was conducted with 3 species of fairy shrimp (B. lynchi, Branchinecta lindahli, and Thamnocephalus platyurus) and 10 chemicals with varying modes of toxic action: ammonia, potassium, chloride, sulfate, chromium(VI), copper, nickel, zinc, alachlor, and metolachlor. The same chemicals were tested in 48-h tests with other branchiopods (the cladocerans Daphnia magna and Ceriodaphnia dubia) and an amphipod (Hyalella azteca), and in 96-h tests with snails (Physa gyrina and Lymnaea stagnalis). Median effect concentrations (EC50s) for B. lynchi were strongly correlated (r2 = 0.975) with EC50s for the commercially available fairy shrimp species T. platyurus for most chemicals tested. Comparison of EC50s for fairy shrimp and EC50s for invertebrate taxa tested concurrently and with other published toxicity data indicated that fairy shrimp were relatively sensitive to potassium and several trace metals compared with other invertebrate taxa, although cladocerans, amphipods, and mussels had similar broad toxicant sensitivity. Interspecies correlation estimation models for predicting toxicity to fairy shrimp from surrogate species indicated that models with cladocerans and freshwater mussels as surrogates produced the best predictions of the sensitivity of fairy shrimp to contaminants. The results of these studies indicate that fairy shrimp are relatively sensitive to a range of toxicants, but Endangered Species Act-listed fairy shrimp of the genus Branchinecta were not consistently more sensitive than other fairy shrimp taxa. Environ Toxicol Chem 2017;36:797–806. Published 2016 Wiley Periodicals Inc. on behalf of SETAC. This article is a US government work and, as such, is in the public domain in the United States of America.

Expression conservation within the circadian clock of a monocot: natural variation at barley Ppd-H1 affects circadian expression of flowering time genes, but not clock orthologs.

PubMed

Campoli, Chiara; Shtaya, Munqez; Davis, Seth J; von Korff, Maria

2012-06-21

The circadian clock is an endogenous mechanism that coordinates biological processes with daily changes in the environment. In plants, circadian rhythms contribute to both agricultural productivity and evolutionary fitness. In barley, the photoperiod response regulator and flowering-time gene Ppd-H1 is orthologous to the Arabidopsis core-clock gene PRR7. However, relatively little is known about the role of Ppd-H1 and other components of the circadian clock in temperate crop species. In this study, we identified barley clock orthologs and tested the effects of natural genetic variation at Ppd-H1 on diurnal and circadian expression of clock and output genes from the photoperiod-response pathway. Barley clock orthologs HvCCA1, HvGI, HvPRR1, HvPRR37 (Ppd-H1), HvPRR73, HvPRR59 and HvPRR95 showed a high level of sequence similarity and conservation of diurnal and circadian expression patterns, when compared to Arabidopsis. The natural mutation at Ppd-H1 did not affect diurnal or circadian cycling of barley clock genes. However, the Ppd-H1 mutant was found to be arrhythmic under free-running conditions for the photoperiod-response genes HvCO1, HvCO2, and the MADS-box transcription factor and vernalization responsive gene Vrn-H1. We suggest that the described eudicot clock is largely conserved in the monocot barley. However, genetic differentiation within gene families and differences in the function of Ppd-H1 suggest evolutionary modification in the angiosperm clock. Our data indicates that natural variation at Ppd-H1 does not affect the expression level of clock genes, but controls photoperiodic output genes. Circadian control of Vrn-H1 in barley suggests that this vernalization responsive gene is also controlled by the photoperiod-response pathway. Structural and functional characterization of the barley circadian clock will set the basis for future studies of the adaptive significance of the circadian clock in Triticeae species.

Allelic Variation in Developmental Genes and Effects on Winter Wheat Heading Date in the U.S. Great Plains

PubMed Central

Brown-Guedira, Gina; Haley, Scott D.; McMaster, Gregory S.; Reid, Scott D.; Smith, Jared; Byrne, Patrick F.

2016-01-01

Heading date in wheat (Triticum aestivum L.) and other small grain cereals is affected by the vernalization and photoperiod pathways. The reduced-height loci also have an effect on growth and development. Heading date, which occurs just prior to anthesis, was evaluated in a population of 299 hard winter wheat entries representative of the U.S. Great Plains region, grown in nine environments during 2011–2012 and 2012–2013. The germplasm was evaluated for candidate genes at vernalization (Vrn-A1, Vrn-B1, and Vrn-D1), photoperiod (Ppd-A1, Ppd-B1 and Ppd-D1), and reduced-height (Rht-B1 and Rht-D1) loci using polymerase chain reaction (PCR) and Kompetitive Allele Specific PCR (KASP) assays. Our objectives were to determine allelic variants known to affect flowering time, assess the effect of allelic variants on heading date, and investigate changes in the geographic and temporal distribution of alleles and haplotypes. Our analyses enhanced understanding of the roles developmental genes have on the timing of heading date in wheat under varying environmental conditions, which could be used by breeding programs to improve breeding strategies under current and future climate scenarios. The significant main effects and two-way interactions between the candidate genes explained an average of 44% of variability in heading date at each environment. Among the loci we evaluated, most of the variation in heading date was explained by Ppd-D1, Ppd-B1, and their interaction. The prevalence of the photoperiod sensitive alleles Ppd-A1b, Ppd-B1b, and Ppd-D1b has gradually decreased in U.S. Great Plains germplasm over the past century. There is also geographic variation for photoperiod sensitive and reduced-height alleles, with germplasm from breeding programs in the northern Great Plains having greater incidences of the photoperiod sensitive alleles and lower incidence of the semi-dwarf alleles than germplasm from breeding programs in the central or southern plains. PMID:27058239

Influence of habitat heterogeneity on anuran diversity in Restinga landscapes of the Parnaíba River delta, northeastern Brazil

PubMed Central

Araújo, Kássio C.; Guzzi, Anderson; Ávila, Robson W.

2018-01-01

Abstract Anurans have close associations with environmental conditions and therefore represent an interesting vertebrate group for examining how resource availability and environmental variables influence species diversity. Associations between habitat heterogeneity and anuran species diversity were tested in the Restinga landscapes of the Parnaíba River delta in northeastern Brazil. Twenty-one anuran species were sampled in the rainy season during monthly excursions (December 2015 to June 2016) into areas of Restinga on two islands in the Parnaíba River delta. The fourth highest anuran diversity was found in this type of environment in Brazil and is the third in northeastern Brazil. Microenvironments, characterized by a combination of vernal pools with different vegetational and physical structures, better explained anuran species composition in the Parnaíba River delta. PMID:29780267

Powassan virus: vernal spread during 1965.

PubMed

McLean, D M; Smith, P A; Livingstone, S E; Wilson, W E; Wilson, A G

1966-03-12

Powassan virus was isolated from seven pools of Ixodes cookei ticks removed from groundhogs (Marmota monax) collected near North Bay, Ontario, between May and August 1965, including five pools obtained during spring. Tick pools, each comprising one to nine ticks, contained 2.0 to 5.5 log(10) TCD(50) of virus upon titration in monolayer cultures of primary swine kidney cells. Powassan virus neutralizing antibody prevalence in sera of the current season's groundhogs increased steadily from zero during May to 25% during August but remained relatively unchanged (42% to 58%) in the previous season's groundhogs, thereby confirming that active infection had occurred particularly amongst juvenile groundhogs mainly during spring 1965. Isolation of one strain of Silverwater virus from Haemaphysalis leporis-palustris ticks and detection of neutralizing antibody in three of nine snowshoe hares (Lepus americanus) confirmed the active spread of this agent during 1965.

Influence of habitat heterogeneity on anuran diversity in Restinga landscapes of the Parnaíba River delta, northeastern Brazil.

PubMed

Araújo, Kássio C; Guzzi, Anderson; Ávila, Robson W

2018-01-01

Anurans have close associations with environmental conditions and therefore represent an interesting vertebrate group for examining how resource availability and environmental variables influence species diversity. Associations between habitat heterogeneity and anuran species diversity were tested in the Restinga landscapes of the Parnaíba River delta in northeastern Brazil. Twenty-one anuran species were sampled in the rainy season during monthly excursions (December 2015 to June 2016) into areas of Restinga on two islands in the Parnaíba River delta. The fourth highest anuran diversity was found in this type of environment in Brazil and is the third in northeastern Brazil. Microenvironments, characterized by a combination of vernal pools with different vegetational and physical structures, better explained anuran species composition in the Parnaíba River delta.

The control net of Mars - May 1977. [from Viking lander spacecraft radio tracking data

NASA Technical Reports Server (NTRS)

Davies, M. E.

1978-01-01

The development of planet-wide control nets of Mars is reviewed, and the May 1977 update is described. This updated control net was computed by means of a large single-block analytical triangulation incorporating the new direction of the spin axis and the new rotation rate of Mars, as determined from radio tracking data provided by the Viking lander spacecraft. The analytical triangulation adjusts for planimetric control only (areocentric latitude and longitude) and for the camera orientation angles. Most of the areocentric radii at the control points were interpolated from radio occultation measurements, but a few were determined photogrammetically, and a substantial number were derived from elevation contours on the 1976 USGS topographic series of Mars maps. A value of V, measured from Mars' vernal equinox along the equator to the prime meridian (Airy-0) is presented.

Effect of local and global geomagnetic activity on human cardiovascular homeostasis.

PubMed

Dimitrova, Svetla; Stoilova, Irina; Yanev, Toni; Cholakov, Ilia

2004-02-01

The authors investigated the effects of local and planetary geomagnetic activity on human physiology. They collected data in Sofia, Bulgaria, from a group of 86 volunteers during the periods of the autumnal and vernal equinoxes. They used the factors local/planetary geomagnetic activity, day of measurement, gender, and medication use to apply a four-factor multiple analysis of variance. They also used a post hoc analysis to establish the statistical significance of the differences between the average values of the measured physiological parameters in the separate factor levels. In addition, the authors performed correlation analysis between the physiological parameters examined and geophysical factors. The results revealed that geomagnetic changes had a statistically significant influence on arterial blood pressure. Participants expressed this reaction with weak local geomagnetic changes and when major and severe global geomagnetic storms took place.

Growth of L-band scintillation at anomaly crest station in association with strong TEC gradient: A study covering wide solar activity period

NASA Astrophysics Data System (ADS)

Pathak, K.; Devi, M.; Barbara, A. K.; Zahan, Y.

2018-01-01

The paper aims at to study the sources associated with growth of L band scintillation over Guwahati, an Appleton anomaly region. Starting with the analysis of diurnal and seasonal characteristic features of scintillation from a minimum sunspot number (Rz) of 10 to a maximum of 140, the paper shows that scintillations are more likely to develop during high solar activity period. It also highlights the explosive increase in occurrence of scintillation from post sunset to pre midnight hours in vernal equinoctial months when the background TEC is 50% more than on a normal day, accompanied by enhanced TEC decay rate. The role of equatorial anomaly effects through EXB drift processes are brought into discussion as possible sources on the growth of small scale irregularities leading to such scintillations.

Growth of L-band scintillation at anomaly crest station in association with strong TEC gradient: A study covering wide solar activity period

NASA Astrophysics Data System (ADS)

Pathak, K.; Devi, M.; Barbara, A. K.; Zahan, Y.

2018-07-01

The paper aims at to study the sources associated with growth of L band scintillation over Guwahati, an Appleton anomaly region. Starting with the analysis of diurnal and seasonal characteristic features of scintillation from a minimum sunspot number (Rz) of 10 to a maximum of 140, the paper shows that scintillations are more likely to develop during high solar activity period. It also highlights the explosive increase in occurrence of scintillation from post sunset to pre midnight hours in vernal equinoctial months when the background TEC is 50% more than on a normal day, accompanied by enhanced TEC decay rate. The role of equatorial anomaly effects through EXB drift processes are brought into discussion as possible sources on the growth of small scale irregularities leading to such scintillations.

PREFACE: Ocean and climate changes in polar and sub-polar environments: proceedings from the 2010 IODP-Canada/ECORD summer school

NASA Astrophysics Data System (ADS)

St-Onge, Guillaume; Veiga-Pires, Cristina; Solignac, Sandrine

2011-05-01

IODP logoECORD logo The European Consortium for Ocean Drilling Program (ECORD), the Canadian Consortium for Ocean Drilling (CCOD), the Network of the Universités du Québec (UQ), the Université du Québec à Montréal (UQAM) and GEOTOP sponsored, in 2010, a summer school entitled 'Ocean and climate changes in polar and sub-polar environments'. This summer school took place from 27 June to 12 July in Rimouski, Québec city and Montréal (Quebec, Canada) and was attended by nineteen students and postdoctoral fellows from seven countries: Canada, France, Germany, UK, Serbia, Portugal and the USA. Lectures, hands-on laboratory exercises and laboratory visits were conducted at the Institut des Sciences de la Mer de Rimouski (ISMER), Institut National de la Recherche Scientifique - Centre Eau Terre Environnement (INRS-ETE) and UQAM, in addition to two field trips and a short geological and geophysical cruise on board the R/V Coriolis II in the St Lawrence Estuary and Saguenay Fjord. During the summer school, more than twenty researchers gave lectures on the use of several paleoceanographic and geophysical techniques to reconstruct ocean and climate changes in polar and sub-polar environments. Some of these lectures are presented as short review papers in this volume. They are intended to portray a brief, but state-of-the-art overview of an array of techniques applied to Arctic and sub-Arctic environments, as well as the geological background information needed by the summer school participants to put the scientific expedition and fieldwork into context. The volume begins with a view on the great challenges and key issues to be addressed in the Arctic Ocean (Stein) in the forthcoming years and is followed by a review (O'Regan) on Late Cenozoic paleoceanography of the Central Arctic. The two subsequent papers (St-Onge et al and de Vernal et al) deal with the oceanographic, paleoceanographic and geological context of the Saguenay Fjord, and St Lawrence Estuary and Gulf. The subsequent set of papers review the use of planktonic foraminifers (Eynaud), diatoms (Crosta) and dinocysts (de Vernal and Rochon) in polar or sub-polar environments. These articles are followed by a paper on transfer functions (Guiot) summarizing the different approaches used to reconstruct past environmental conditions from micropaleontological proxy data. Two papers on geochemical and isotopic proxies are then presented and related to either foraminifera isotopic records (Hillaire-Marcel) in high northern latitudes or changes in ocean circulation and weathering inputs derived from radiogenic isotopes (Frank). The volume concludes with a paper on the application of visible/near infrared derivative spectroscopy to Arctic sediments (Ortiz). All the papers published in this volume benefited from the reviews of at least two reviewers, whom we thank for their valuable time and comments. We also thank the crew of the Coriolis II, and the many scientists, participants and volunteers who contributed to the summer school and made it a great success. In addition to GEOTOP and UQAM, the following institutions contributed to the organization of the summer school: ISMER, INRS-ETE, the Geological Survey of Canada, and REFORMAR. Finally, we thank Hélène Gaonac'h (UQAM) for coordinating the summer school and Anne de Vernal (UQAM) for her leadership throughout the summer school. Editors Guillaume St-Onge Canada Research Chair in Marine Geology, Institut des sciences de la mer de Rimouski (ISMER) & GEOTOP Research Center, 310 allée des Ursulines, Rimouski, Québec, Canada, G5L 3A1 Cristina Veiga-Pires FCMA - CIMA, Universidade do Algarve, Campus de Gambelas, 8000-117 Faro, Portugal Sandrine Solignac GEOTOP, Université du Québec à Montréal, PO Box 8888, succursale 'centre ville' Montréal, QC, H3C 3P8 Canada Scientists who contributed to the summer school: Hans Asnong (UQAM/GEOTOP, Canada) Gilles Bellefleur (Geological Survey of Canada-Ottawa, Canada) Anne de Vernal (UQAM/GEOTOP, Canada) Mathieu Duchesne (Geological Survey of Canada-Québec, Canada) Frédérique Eynaud (EPOC/Universite Bordeaux I, France) Pierre Francus (INRS-ETE/GEOTOP, Canada) Martin Frank (IFM-GEOMAR, Germany) Yves Gélinas (Concordia/GEOTOP, Canada) Joël Guiot (CEREGE, France) Claude Hillaire-Marcel (UQAM/GEOTOP, Canada) Patrick Lajeunesse (University Laval, Canada) Jean-François Lemieux (Courant Institute of Mathematical Sciences, New York University, USA) Guillaume Massé (LOCEAN/Institut Pierre-Simon Laplace, France) Matt O'Regan (Cardiff University, UK) Joseph Ortiz (Kent State University, USA) Frank Rack (University Nebraska-Lincoln, USA/ANDRILL Science Management Office) Taoufik Radi (UQAM/GEOTOP, Canada) André Rochon (ISMER-UQAR/GEOTOP, Canada) Ruediger Stein (Alfred Wegener Institute, Germany) Guillaume St-Onge (ISMER-UQAR/GEOTOP, Canada) Bjorn Sundby (ISMER-UQAR, Canada) GEOTOP logoUQAM UQAR logoINRS logo Universite de Quebec logoGeological Survey of Canada logo

Ten Years of Vegetation Change in Northern California Marshlands Detected using Landsat Satellite Image Analysis

NASA Technical Reports Server (NTRS)

Potter, Christopher

2013-01-01

The Landsat Ecosystem Disturbance Adaptive Processing System (LEDAPS) methodology was applied to detected changes in perennial vegetation cover at marshland sites in Northern California reported to have undergone restoration between 1999 and 2009. Results showed extensive contiguous areas of restored marshland plant cover at 10 of the 14 sites selected. Gains in either woody shrub cover and/or from recovery of herbaceous cover that remains productive and evergreen on a year-round basis could be mapped out from the image results. However, LEDAPS may not be highly sensitive changes in wetlands that have been restored mainly with seasonal herbaceous cover (e.g., vernal pools), due to the ephemeral nature of the plant greenness signal. Based on this evaluation, the LEDAPS methodology would be capable of fulfilling a pressing need for consistent, continual, low-cost monitoring of changes in marshland ecosystems of the Pacific Flyway.

Recent Patents and Emerging Therapeutics in the Treatment of Allergic Conjunctivitis

PubMed Central

Mishra, Gyan P.; Tamboli, Viral; Jwala, Jwala; Mitra, Ashim K.

2011-01-01

Ocular allergy is an inflammatory response of the conjunctival mucosa that also affects the cornea and eyelids. Allergic conjunctivitis includes seasonal allergic conjunctivitis (SAC), perennial allergic conjunctivitis (PAC), vernal keratoconjunctivitis (VKC), atopic keratoconjunctivitis (AKC) and giant papillary conjunctivitis (GPC). In general, allergic conditions involve mast cell degranulation that leads to release of inflammatory mediators and activation of enzymatic cascades generating pro-inflammatory mediators. In chronic ocular inflammatory disorders associated with mast cell activation such as VKC and AKC constant inflammatory response is observed due to predominance of inflammatory mediators such as eosinophils and Th2-generated cytokines. Antihistamines, mast-cell stabilizers, non-steroidal anti-inflammatory agents, corticosteroids and immunomodulatory agents are commonly indicated for the treatment of acute and chronic allergic conjunctivitis. In recent years newer drug molecules have been introduced in the treatment of allergic conjunctivitis. This article reviews recent patents and emerging therapeutics in the treatment of allergic conjunctivitis. PMID:21171952

Serologic evidence of exposure of raptors to influenza A virus.

PubMed

Redig, Patrick T; Goyal, Sagar M

2012-06-01

Serum or plasma samples from raptors that prey or scavenge upon aquatic birds were tested by a commercially available blocking enzyme-linked immunosorbent assay for the evidence of antibodies to influenza A virus. Samples were taken from birds (n = 616) admitted to two rehabilitation centers in the United States. In addition, samples from 472 migrating peregrine falcons (Falco peregrinus) trapped on autumnal and vernal migrations for banding purposes were also tested. Only bald eagles were notably seropositive (22/406). One each of peregrine falcon, great horned owl (Bubo virginianus), and Cooper's hawk (Accipiter cooperi) from a total of 472, 81, and 100, respectively, were also positive. None of the turkey vultures (n = 21) or black vultures (n = 8) was positive. No clinical signs referable to avian influenza were seen in any bird at the time of capture. These data indicate that, among raptors, bald eagles do have exposure to influenza A viruses.

Monitoring the vernal advancement and retrogradation (green wave effect) of natural vegetation. [Great Plains Corridor

NASA Technical Reports Server (NTRS)

Rouse, J. W., Jr. (Principal Investigator); Haas, R. H.; Deering, D. W.; Schell, J. A.

1973-01-01

The author has identified the following significant results. The Great Plains Corridor rangeland project utilizes natural vegetation systems as phenological indicators of seasonal development and climatic effects upon regional growth conditions. A method has been developed for quantitative measurement of vegetation conditions over broad regions using ERTS-1 MSS data. Radiance values recorded in ERTS-1 spectral bands 5 and 7, corrected for sun angle, are used to compute a band ratio parameter which is shown to be correlated with green biomass and vegetation moisture content. This report details the progress being made toward determining factors associated with the transformed vegetation index (TVI) and limitations on the method. During the first year of ERTS-1 operation (cycles 1-20), an average of 50% usable ERTS-1 data was obtained for the ten Great Plains Corridor test sites.

Trajectories of inner and outer heliospheric spacecraft: Predicted through 1999

NASA Technical Reports Server (NTRS)

Parthasarathy, R.; King, Joseph H.

1991-01-01

Information is presented in tabular and graphical form on the trajectories of the international fleet of spacecraft that will be probing the far reaches of the heliosphere during the 1990s. In particular, the following spacecraft are addressed: Pioneer 10 and 11, Pioneer Venus Orbiter (PVO), Voyager 1 and 2, Galileo, Ulysses, Suisei, Sakigake, Giotto, International Cometary Explorer (ICE), and Interplanetary Monitoring Platform 8 (IMP 8). Yearly resolution listing of position information in inertial space are given for Pioneer and Voyager spacecraft from the times of their launches in the 1970s. One series of plots shows the radial distances, latitudes, and longitudes of the Pioneers and Voyagers. The solar ecliptic inertial coordinate system is used. In this system, the Z axis is normal to the ecliptic plane and the X axis is towards the first point of Aries (from Sun to Earth on the vernal equinox).

Powassan Virus: Vernal Spread During 1965

PubMed Central

McLean, D. M.; Smith, Patricia A.; Livingstone, Sandra E.; Wilson, W. E.; Wilson, A. G.

1966-01-01

Powassan virus was isolated from seven pools of Ixodes cookei ticks removed from groundhogs (Marmota monax) collected near North Bay, Ontario, between May and August 1965, including five pools obtained during spring. Tick pools, each comprising one to nine ticks, contained 2.0 to 5.5 log10 TCD50 of virus upon titration in monolayer cultures of primary swine kidney cells. Powassan virus neutralizing antibody prevalence in sera of the current season's groundhogs increased steadily from zero during May to 25% during August but remained relatively unchanged (42% to 58%) in the previous season's groundhogs, thereby confirming that active infection had occurred particularly amongst juvenile groundhogs mainly during spring 1965. Isolation of one strain of Silverwater virus from Haemaphysalis leporis-palustris ticks and detection of neutralizing antibody in three of nine snowshoe hares (Lepus americanus) confirmed the active spread of this agent during 1965. PMID:5904925

Applied regional monitoring of the vernal advancement and retrogradation (green wave effect) of natural vegetation in the Great Plains corridor. [Southwest Texas

NASA Technical Reports Server (NTRS)

Harlan, J. C.; Deering, D. W. (Principal Investigator)

1979-01-01

The author has identified the following significant results. Rangelands in southwest Texas were used to establish threshold values and limitations on measuring herbaceous biomass under typical arid and semi-arid range conditions. Previous regression relationships established between ND6 and green biomass for two different ecosystems were similar. The west Texas data set for brush-free sites was too small to be statistically conclusive. It appears that a line with a third (and steeper) slope would be best for the west Texas data, and that line would intersect the other two. Results show that similar relationships exist between ND6 and green biomass under low brush canopy cover conditions, but local variations require a calibration to determine the best fit for an ecosystem. The brush canopy has a detrimental effect on the ND6 vs. herbaceous green biomass relationship.

Effects of the equatorial ionosphere on L-band Earth-space transmissions

NASA Technical Reports Server (NTRS)

Smith, Ernest K.; Flock, Warren L.

1993-01-01

Ionosphere scintillation can effect satellite telecommunication up to Ku-band. Nighttime scintillation can be attributed to large-scale inhomogeneity in the F-region of the ionosphere predominantly between heights of 200 and 600 km. Daytime scintillation has been attributed to sporadic E. It can be thought of as occurring in three belts: equatorial, high-latitude, and mid-latitude, in order of severity. Equatorial scintillation occurs between magnetic latitudes +/- 25 degrees, peaking near +/- 10 degrees. It commonly starts abruptly near 2000 local time and dies out shortly after midnight. There is a strong solar cycle dependence and a seasonal preference for the equinoxes, particularly the vernal one. Equatorial scintillation occurs more frequently on magnetically quiet than on magnetically disturbed days in most longitudes. At the peak of the sunspot cycle scintillation depths as great as 20 dB were observed at L-band.

On the occurrence of F region irregularities over Haikou retrieved from COSMIC GPS radio occultation and ground-based ionospheric scintillation monitor observations

NASA Astrophysics Data System (ADS)

Yu, Xiao; Yue, Xinan; Zhen, Weimin; Xu, Jisheng; Liu, Dun; Guo, Shan

2017-01-01

In this paper, the amplitude scintillation index (s4) derived from COSMIC (Constellation Observing System for Meteorology, Ionosphere, and Climate) radio occultation (RO) technique and ground-based Ionospheric Scintillation Monitor (ISM) at Haikou station (geographic latitude: 20.0°N, geographic longitude: 110.3°E, and geomagnetic latitude: 10.02°N) is used to investigate the morphology of F region irregularities in the low latitudes of China. The RO events of tangent point within the range of 10-30°N latitude, 70-160°E longitude, and 150-500 km altitude are adopted to analyze the ionospheric scintillation characteristics. The percentage of ionospheric scintillation occurrence is computed to obtain its diurnal variations, seasonal trends, and the dependence on solar and geomagnetic activities. Based on a statistical analysis of a long-term period data set (years 2007 to 2013), we found that the ionospheric scintillation occurrence from both techniques show similar variations. After sunset (18 LT), the scintillation occurrence increases rapidly and reaches the maximum 3 h later. Then it decreases rapidly till 04 LT and remains low level during the daytime. The ionospheric scintillation tends to occur more frequently during vernal and autumnal equinoxes, especially in March-April and September-October. The equinoctial asymmetry could be seen clearly from the ground-based ISM observations. The peak ionospheric scintillation occurrence time varies with seasons. It is reached latest in summer, while in spring it is very close to that in autumn. The nighttime ionospheric scintillation occurrence tends to increase with increasing solar activities. The increasing tendency is more prominent in vernal and autumnal equinoxes than that in summer and winter. In general, the control of geomagnetic activities is apt to inhibit ionospheric scintillation at equinox nighttime. In summer and winter, the geomagnetic activities could either trigger or inhibit the generation of ionospheric irregularities in a much more complicated way. Thus, it can be concluded that the tangent point location does accurately represent the scattering region, at least in an average sense. The RO technique is demonstrated to be a useful tool for remotely sensing the terrestrial ionosphere on a global scale down to the regional scale in terms of scintillation occurrence.

Acute sensitivity of the vernal pool fairy shrimp, Branchinecta lynchi (Anostraca; Branchinectidae), and surrogate species to 10 chemicals.

PubMed

Ivey, Chris D; Besser, John M; Ingersoll, Chris G; Wang, Ning; Rogers, D Christopher; Raimondo, Sandy; Bauer, Candice R; Hammer, Edward J

2017-03-01

Vernal pool fairy shrimp, Branchinecta lynchi, (Branchiopoda; Anostraca) and other fairy shrimp species have been listed as threatened or endangered under the US Endangered Species Act. Because few data exist about the sensitivity of Branchinecta spp. to toxic effects of contaminants, it is difficult to determine whether they are adequately protected by water quality criteria. A series of acute (24-h) lethality/immobilization tests was conducted with 3 species of fairy shrimp (B. lynchi, Branchinecta lindahli, and Thamnocephalus platyurus) and 10 chemicals with varying modes of toxic action: ammonia, potassium, chloride, sulfate, chromium(VI), copper, nickel, zinc, alachlor, and metolachlor. The same chemicals were tested in 48-h tests with other branchiopods (the cladocerans Daphnia magna and Ceriodaphnia dubia) and an amphipod (Hyalella azteca), and in 96-h tests with snails (Physa gyrina and Lymnaea stagnalis). Median effect concentrations (EC50s) for B. lynchi were strongly correlated (r 2  = 0.975) with EC50s for the commercially available fairy shrimp species T. platyurus for most chemicals tested. Comparison of EC50s for fairy shrimp and EC50s for invertebrate taxa tested concurrently and with other published toxicity data indicated that fairy shrimp were relatively sensitive to potassium and several trace metals compared with other invertebrate taxa, although cladocerans, amphipods, and mussels had similar broad toxicant sensitivity. Interspecies correlation estimation models for predicting toxicity to fairy shrimp from surrogate species indicated that models with cladocerans and freshwater mussels as surrogates produced the best predictions of the sensitivity of fairy shrimp to contaminants. The results of these studies indicate that fairy shrimp are relatively sensitive to a range of toxicants, but Endangered Species Act-listed fairy shrimp of the genus Branchinecta were not consistently more sensitive than other fairy shrimp taxa. Environ Toxicol Chem 2017;36:797-806. Published 2016 Wiley Periodicals Inc. on behalf of SETAC. This article is a US government work and, as such, is in the public domain in the United States of America. Published 2016 Wiley Periodicals Inc. on behalf of SETAC. This article is a US government work and, as such, is in the public domain in the United States of America.

Quipus and System of Coordinated Precession

NASA Astrophysics Data System (ADS)

Campos, T. C.

2004-05-01

The Incas of ancient Peru possessed no writing. Instead, they developed a unique system expressed on spatial arrays of colored knotted cords called Quipus to record and transmit information throughout their vast empire. In their thorough description of quipus, Ascher & Ascher observed that in two cases the numbers registered in their strings have a very special relationship to each other. For this to occur the numbers must have been obtained through the multiplication of whole numbers by fractions or decimals, operations apparently beyond the arithmetic knowledge of the Incas. The quipus AS120 and AS143, coming from Ica (Peru) and conserved in the Museum of Berlin has the suitable characteristics previously. In the AS143 there is a the relationship with the systems of coordinated precession (tilt of Earth's spin axis (40036); eccentricity of Earth's orbit (97357); and precession of equinoxes (between 18504 and 23098)). For the history of the Earth are necessary an chronometer natural to coordinate and to classify the observations and this chronometer comes to be the vernal point, defining the vernal point as" a sensitive axis of maximum conductivity" as itdemonstrates it the stability of the geomagnetic equator (inclination of the field is zero grades), in the year 1939 calculated with the IGRF from the year 1900 up to the 2004 and that it is confirmed with tabulated data of the Geophysical Institute of Huancayo (Peru),from that date until this year (2004) and this fluctuating between the 12-14 South.,on the other hand in the area of Brazil it has advanced very quickly toward the north, and above to 108 km. approximately it is located the equatorial electrojet that is but intense in the equinoxes in South America. And this stability from the point of view of the precession of the equinoxes this coinciding with the entrance of the apparent sun for the constellation of Aquarius, being this mechanism the base to establish a system of coordinated precession where it is also considered tilt of Earth's spin axis; eccentricity of Earth's orbit; and precession of equinoxes:Together these, yield a complex curve for the solar constant at different latitudes,as first suggested by Croll( 1875) y Milankovitch (1920, 1930), Zeuner ( e. g. 1945), and other.

Delineation of Waters of the United States for Lawrence Livermore National Laboratory, Site 300

DOE Office of Scientific and Technical Information (OSTI.GOV)

Preston, R E

2006-09-25

This report presents the results of a delineation of waters of the United States, including wetlands, for Lawrence Livermore National Laboratory's Site 300 in Alameda and San Joaquin Counties, California. Jones & Stokes mapped vegetation at Site 300 in August, 2001, using Global Positioning System (GPS) data recorders to collect point locations and to record linear features and map unit polygons. We identified wetlands boundaries in the field on the basis of the plant community present. We returned to collect additional information on wetland soils on July 3, 2002. Forty-six wetlands were identified, with a total area of 3.482 hectaresmore » (8.605 acres). The wetlands include vernal pools, freshwater seeps, and seasonal ponds. Wetlands appearing to meet the criteria for federal jurisdictional total 1.776 hectares (4.388 acres). A delineation map is presented and a table is provided with information on the type, size, characteristic plant species of each wetland, and a preliminary jurisdictional assessment.« less

Atmospheric chemical and thermal structure evolution after one Titanian year

NASA Astrophysics Data System (ADS)

Coustenis, A.; Bampasidis, G.; Vinatier, S.; Achterberg, R.; Lavvas, P.; Nixon, C.; Jennings, D.; Teanby, N.; Flasar, F. M.; Carlson, R.; Orton, G.; Romani, P.; Guandique, E. A.

2012-09-01

We analyze Cassini Composite Infrared Spectrometer (CIRS) data taken during the numerous Titan flybys from 2004-2010 and compare them to the 1980 Voyager 1 flyby values inferred from the re-analysis of the Infrared Radiometer Spectrometer (IRIS) spectra. Seven years after Cassini's Saturn orbit insertion, we look at the evolution of the chemical composition by combining these recordings and the intervening ground- and space- based observations, we have in hand almost a complete picture of the stratospheric evolution within a Titan year. The fulfillment of one Titanian year of observations provides us for the first time with the opportunity to evaluate the relative role of different physical processes in the long-term evolution of this complex environment. By comparing V1 (1980), ISO (1997) and Cassini (2010) we find that a reversal of composition near the equator from autumnal equinox to vernal equinox (1996 min -2009 max, half a year), as well as some differences in polar enhancement at the same era as Voyager.

Seasonal variations of the ionospheric total electron content in Asian equatorial anomaly regions

NASA Astrophysics Data System (ADS)

Tsai, Ho-Fang; Liu, Jann-Yenq; Tsai, Wei-Hsiung; Liu, Chao-Han; Tseng, Ching-Liang; Wu, Chin-Chun

2001-12-01

The ionospheric total electron contents (TEC) in both northern and southern equatorial anomaly regions are examined by using the Global Positioning System (GPS) in Asian area. The TEC contour charts obtained at YMSM (25.2°N, 121.6°E 14.0°N geomagnetic) and DGAR (7.3°S, 72.4°E 16.2°S geomagnetic) stations in 1997, solar minimum, are investigated. It is found that the ionospheric crests manifest remarkable seasonal variations. The TEC values on both northern and southern equatorial anomaly crests yield their maximum values during the vernal and autumnal months, but the winter anomaly does not appear in the southern region. Results show that both crests are fully developed around midday in winter, postnoon in equinoxes and late afternoon in summer, and the two crests move significantly equatorward in winter but slightly poleward in summer and autumn. These phenomena can be fully explained by a combined theory of the transequatorial neutral wind, the subsolar point, and the auroral equatorward wind.

Applied regional monitoring of the vernal advancement and retrogradation (Green wave effect) of natural vegetation in the Great Plains corridor

NASA Technical Reports Server (NTRS)

Rouse, J. W., Jr. (Principal Investigator); Deering, D. W.; Haas, R. H.; Welch, R. I.; Harlan, J. C.; Whitney, P. R.

1977-01-01

The author has identified the following significant results. LANDSAT 2 has shown that digital data products can be effectively employed on a regional basis to monitor changes in vegetation conditions. The TV16 was successfully applied to an extended test site and the Great Plains Corridor in tests of the ability to assess green forage biomass on rangelands as an index to vegetation condition. A strategy for using TV16 on a regional basis was developed and tested. These studies have shown that: (1) for rangelands with good vegetative cover, such as most of the Great Plains, and which are not heavily infested with brush or undesirable weed species, the LANDSAT digital data can provide a good estimate (within 250 kg/ha) of the quantity of green forage biomass, and (2) at least five levels of pasture and range feed conditions can be adequately mapped for extended regions.

Optimized DNA extraction methods for encysted embryos of the endangered fairy shrimp, Branchinecta sandiegonensis

USGS Publications Warehouse

Steele, A.N.; Simovich, M.A.; Pepino, D.; Schroeder, K.M.; Vandergast, A.G.; Bohonak, A.J.

2009-01-01

The San Diego fairy shrimp Branchinecta sandiegonensis is a federally endangered species endemic to vernal pools in southern California, USA. Filling events in these habitats are highly variable, with some pools failing to hold water long enough for reproduction over many successive years. Studies of this species are thus hindered by the relatively rare appearance of aquatically active life history phases. Because diapausing cysts are abundant and present at all times, they provide an underutilized opportunity for both species identification and genetic studies. However, methods for extracting DNA from cysts are technically challenging because of their structure and size. Here we present a protocol for extracting DNA from B. sandiegonensis cysts in sufficient quantities for "DNA Barcoding", microsatellite analysis and other genotyping and sequencing applications. The technique will aid in population genetic studies and species identification (since taxonomic keys only distinguish among adults), and will be applicable to other crustaceans with similar diapausing cysts. ?? Springer Science+Business Media B.V. 2008.

Monitoring the vernal advancement and retrogradation (green wave effect) of natural vegetation

NASA Technical Reports Server (NTRS)

Rouse, J. W., Jr. (Principal Investigator)

1973-01-01

The author has identified the following significant results. Preliminary evaluation of autumnal phase ground truth data suggests that the sampling procedures at the Great Plains Corridor network test sites are adequate to show relatively small temporal changes in above-ground vegetation biomass and vegetation condition. Vegetation changes measured August through December, reflect grazing intensity and environmental conditions at the test sites. Preliminary analysis of black and white imagery suggests that detail in vegetation patterns is much greater than originally anticipated. A first look analysis of single band imagery and digital data at two locations shows that woodland, grassland, and cropland areas are easily delineated. Computer derived grey-scale maps from MSS digital data were shown to be useful in identifying the location of small fields and features of the natural and cultivated lands. Single band imagery and digital data are believed to have important application for synoptic land use mapping and inventory. Initial ratio analysis, using band 5 and 7 data, suggests the applicability in the greenness of a vegetative scene.

Lunar ephemeris and selenographic coordinates of the earth and sun for 1981 and 1982

NASA Technical Reports Server (NTRS)

Hartung, A. D.

1972-01-01

Ephemeris data are presented in sections for each month for 1981 and 1982 to provide a time history of lunar coordinates and related geometric information. A NASA Manned Spacecraft Center (MSC) modification of the Jet Propulsion Laboratory ephemeris tape was used to calculate and plot coordinates of the earth, moon, and sun. The ephemeris is referenced to the mean vernal equinox at the nearest beginning of a Besselian year. Therefore, the reference equinox changes from one year to the next between June 30 and July 1. The apparent discontinuity in the data is not noticeable in the graphical presentation, but can be observed in the digital output. The mean equator of epoch is used in all cases. For 1966 to 1970, the same type of data presentation has been prepared in informal MSC documents. The data for 1971 to 1980 and 1983 and 1984 are presented. The computer program used to compute and plot the ephemeris data is described.

A proposed model for the flowering signaling pathway of sugarcane under photoperiodic control.

PubMed

Coelho, C P; Costa Netto, A P; Colasanti, J; Chalfun-Júnior, A

2013-04-25

Molecular analysis of floral induction in Arabidopsis has identified several flowering time genes related to 4 response networks defined by the autonomous, gibberellin, photoperiod, and vernalization pathways. Although grass flowering processes include ancestral functions shared by both mono- and dicots, they have developed their own mechanisms to transmit floral induction signals. Despite its high production capacity and its important role in biofuel production, almost no information is available about the flowering process in sugarcane. We searched the Sugarcane Expressed Sequence Tags database to look for elements of the flowering signaling pathway under photoperiodic control. Sequences showing significant similarity to flowering time genes of other species were clustered, annotated, and analyzed for conserved domains. Multiple alignments comparing the sequences found in the sugarcane database and those from other species were performed and their phylogenetic relationship assessed using the MEGA 4.0 software. Electronic Northerns were run with Cluster and TreeView programs, allowing us to identify putative members of the photoperiod-controlled flowering pathway of sugarcane.

210 Study on the Sensitization Rates to Airbone Pollen and Mold in Children

PubMed Central

Park, So Hyun; Lim, Dae Hyun; Son, Byong Kwan; Kim, Jeong Hee; Oh, In Bo; Kim, Yang Ho; Lee, Keun Hwa; Kim, Su Young; Hong, Sung Chul

2012-01-01

Background Aeroallergens are important causative factors for allergies such as allergic rhinitis, allergic conjunctivitis and asthma. Previous studies for the sensitization rate to aeroallergen were based on those patient groups who had visited the pediatric allergy clinic. Compared to that, we inquired into the sensitization rates based on general school aged student population group in the city of Incheon, Jeju and Ulsan. Methods With informed consent, skin prick tests were performed on 5,094 students between April and June, 2010. Common 21 aeroallergens were used on elementary school student while middle and high school students were tested upon 28 allergens. 28 allergen list as positive control (1%Histamine), negative control (Normal saline), D.pteronyssinus, D.farinae, Citrus red mite, pollen (Birch, Alder, Oak, Japanese cedar, Pine, Willow, Elm, Maple, Bermuda grass, Timothy grass, Rye grass, Orchard, Meadow grass, Vernal grass, Mugwort, Japanese hop, Fat hen, Ragweed, Plantain), mold (Penicillatum, Asperugillus, Cladosporium, Alternaria) and 21 kinds of allergens that were used on elementary school students count as same as above except Elm, Rye grass, Orchard, Meadow grass, Vernal grass, Fat hen, Plantain. Results If arranged in rates of higher sensitization were D. pteronyssinus (25.79%), D. farinae (18.66%), Mugwort (6.20%), Willow (4.07%) in Incheon, D. pteronyssinus (33.35%), D. farinae (24.78%), Japanese cedar (15.36%), Alternaria (7.33%) in Jeju, D. pteronyssinus (32.79%), D. farinae (30.27%), Alder (10.13%), Birch (8.68%) in Ulsan respectively. The sensitization rate of Japanese cedar was statistically significantly higher in Jeju. The sensitization rate of Birch, Alder, Oak was higher in Ulsan. The sensitization rate of Ragweed was 0.99% in Incheon, 1.07% in Jeju, 0.81% in Ulsan. The sensitization rate of Mugwort in Incheon was 6.20% which was meaningfully higher in comparison to 2.32% of Jeju and 2.73% of Ulsan. The sensitization rate of Alternaria was 2.98% in Incheon, 7.33% in Jeju, 2.39% in Ulsan and as we can see it was higher in Jeju. The sensitization rate of Dermatophagoides had an increasing tendency with increasing age. Conclusions Changes in exposure rate to allergens with increasing ages brings changes in sensitization rates. And because there are changes in sensitization rates due to different regional living environmental status and discrepancies of surrounding biologic species, this would leave us there lies needs for subsequent studies and nationwide researches.

In the Shadows of Ice and Sand: International Collaboration between Scientists and Students in the High Desert

NASA Astrophysics Data System (ADS)

Haste, T.; Baker, A.; Spindler, P.; McGann, M.

2008-12-01

Two middle school students in Albuquerque, New Mexico collaborated with staff of Amundsen-Scott South Pole and Palmer stations and the US Geological Survey to measure sun shadows. Students tested the phrase: "a location will experience longer shadows in winter and a shorter shadow in summer" through a collection of international data demonstrating seasonal solar angle variation. Measurements of the length of the sun's shadow were taken weekly at solar noon as cast from a one-meter stick placed at 90° from a flat surface. Students focused initially comparing their measurements taken between November and winter solstice to those taken concurrently by Antarctic station personnel. Viewing websites, blogs, sending e-mails, and placing a call to the team at the Amundsen-Scott South Pole Station, students learned about the different contributing locations. During the call, the shadow teams discussed the students' data summary, experimental problems, personal motivations for the team members to be at the pole, how they got started in their particular field, and their opinions on Climate Change. Winter solstice measurements ranged from 158 to 231 cm between the latitudes of 35 and 42° N. Southern latitudes reported a range of 87 to 202 cm between 64 and 90° S. The project expanded with international collaboration on vernal equinox and summer solstice. Project partners submitted data from locations in seven countries spanning both hemispheres. On the vernal equinox, measurements ranged from 29.8 cm near the Equator (American Samoa 14° S) to 0 cm at the South Pole. Northern measurements were taken in Egypt (30° N) of 64.7 cm, Norway (59° N) 164 cm and Russia (59° N) of 158 cm. One partner stated that he originally didn't expect much of a difference between Russia and Norway as they were not quite a degree apart, and was surprised by the data. Reflecting on what he learned, he commented, "I now understand the differences in a few degrees can make in the amount of sunlight a location receives." Representing their school in the regional science fair, one of the students commented that she didn't think the judges understood their project. "It wasn't a cure for cancer, or some new invention, it was examining a misconception we had through measurement. The best part of the project was talking to people who do science and getting their feedback. They were so nice to help and it was fun to ask them questions, especially when we called them."

Allele frequencies in the VRN-A1, VRN-B1 and VRN-D1 vernalization response and PPD-B1 and PPD-D1 photoperiod sensitivity genes, and their effects on heading in a diverse set of wheat cultivars (Triticum aestivum L.).

PubMed

Kiss, Tibor; Balla, Krisztina; Veisz, Ottó; Láng, László; Bedő, Zoltán; Griffiths, Simon; Isaac, Peter; Karsai, Ildikó

2014-01-01

Heading of cereals is determined by complex genetic and environmental factors in which genes responsible for vernalization and photoperiod sensitivity play a decisive role. Our aim was to use diagnostic molecular markers to determine the main allele types in VRN - A1 , VRN - B1 , VRN - D1 , PPD - B1 and PPD - D1 in a worldwide wheat collection of 683 genotypes and to investigate the effect of these alleles on heading in the field. The dominant VRN - A1 , VRN - B1 and VRN - D1 alleles were present at a low frequency. The PPD - D1a photoperiod-insensitive allele was carried by 57 % of the cultivars and was most frequent in Asian and European cultivars. The PPD - B1 photoperiod-insensitive allele was carried by 22 % of the genotypes from Asia, America and Europe. Nine versions of the PPD - B1 -insensitive allele were identified based on gene copy number and intercopy structure. The allele compositions in PPD - D1 , PPD - B1 and VRN - D1 significantly influenced heading and together explained 37.5 % of the phenotypic variance. The role of gene model increased to 39.1 % when PPD - B1 intercopy structure was taken into account instead of overall PPD - B1 type (sensitive vs. insensitive). As a single component, PPD - D1 had the most important role (28.0 % of the phenotypic variance), followed by PPD - B1 (12.3 % for PPD - B1 _overall, and 15.1 % for PPD - B1 _intercopy) and VRN - D1 (2.2 %). Significant gene interactions were identified between the marker alleles within PPD - B1 and between VRN - D1 and the two PPD1 genes. The earliest heading genotypes were those with the photoperiod-insensitive allele in PPD - D1 and PPD - B1 , and with the spring allele for VRN - D1 and the winter alleles for VRN - A1 and VRN - B1 . This combination could only be detected in genotypes from Southern Europe and Asia. Late-heading genotypes had the sensitivity alleles for both PPD1 genes, regardless of the allelic composition of the VRN1 genes. There was a 10-day difference in heading between the earliest and latest groups under field conditions.

Ancient Hydrothermal Springs in Arabia Terra, Mars

NASA Technical Reports Server (NTRS)

Oehler, Dorothy Z.; Allen, Carlton C.

2008-01-01

Hydrothermal springs are important astrobiological sites for several reasons: 1) On Earth, molecular phylogeny suggests that many of the most primitive organisms are hyperthermophiles, implying that life on this planet may have arisen in hydrothermal settings; 2) on Mars, similar settings would have supplied energy- and nutrient-rich waters in which early martian life may have evolved; 3) such regions on Mars would have constituted oases of continued habitability providing warm, liquid water to primitive life forms as the planet became colder and drier; and 4) mineralization associated with hydrothermal settings could have preserved biosignatures from those martian life forms. Accordingly, if life ever developed on Mars, then hydrothermal spring deposits would be excellent localities in which to search for morphological or chemical remnants of that life. Previous attempts to identify martian spring deposits from orbit have been general or limited by resolution of available data. However, new satellite imagery from HiRISE has a resolution of 28 cm/pixel which allows detailed analysis of geologic structure and geomorphology. Based on these new data, we report several features in Vernal Crater, Arabia Terra that we interpret as ancient hydrothermal springs.

The Variation of Hydrocarbon Abundances with Latitude and Season in Saturn's Stratosphere

NASA Technical Reports Server (NTRS)

Moses, J. I.; Greathouse, T. K.

2005-01-01

We have developed a realistic, time-variable, one-dimensional, seasonal model for stratospheric photochemistry on Saturn using the Caltech/ JPL KINETICS code [1,2,3]. The model accounts for variations in ultraviolet flux due to orbital position, solar-cycle variations, and ring-shadowing effects. The results for two Saturnian years, starting at Ls = 0 in 1950 and running until the upcoming northern vernal equinox in 2009, are presented for numerous latitudes. The same two model years are run over and over again until the model convergences to make sure that high-altitude effects have had a chance to propagate down through the atmosphere. We use the SOLAR2000 model [4,5], in combination with the spectra presented in [6], to predict the ultraviolet flux at any wavelength and any point in time during the simulation. Saturn's orbital position during the simulation was taken from the ephemeris calculator at http://ssd.jpl.nasa.gov/horizons.html [7]. The photochemical model is derived from "Model C" of [8] and uses a hydrocarbon reaction list that has been extensively updated from that presented in [3].

Cross-genome map based dissection of a nitrogen use efficiency ortho-metaQTL in bread wheat unravels concerted cereal genome evolution.

PubMed

Quraishi, Umar Masood; Abrouk, Michael; Murat, Florent; Pont, Caroline; Foucrier, Séverine; Desmaizieres, Gregory; Confolent, Carole; Rivière, Nathalie; Charmet, Gilles; Paux, Etienne; Murigneux, Alain; Guerreiro, Laurent; Lafarge, Stéphane; Le Gouis, Jacques; Feuillet, Catherine; Salse, Jerome

2011-03-01

Monitoring nitrogen use efficiency (NUE) in plants is becoming essential to maintain yield while reducing fertilizer usage. Optimized NUE application in major crops is essential for long-term sustainability of agriculture production. Here, we report the precise identification of 11 major chromosomal regions controlling NUE in wheat that co-localise with key developmental genes such as Ppd (photoperiod sensitivity), Vrn (vernalization requirement), Rht (reduced height) and can be considered as robust markers from a molecular breeding perspective. Physical mapping, sequencing, annotation and candidate gene validation of an NUE metaQTL on wheat chromosome 3B allowed us to propose that a glutamate synthase (GoGAT) gene that is conserved structurally and functionally at orthologous positions in rice, sorghum and maize genomes may contribute to NUE in wheat and other cereals. We propose an evolutionary model for the NUE locus in cereals from a common ancestral region, involving species specific shuffling events such as gene deletion, inversion, transposition and the invasion of repetitive elements. © 2011 The Authors. The Plant Journal © 2011 Blackwell Publishing Ltd.

Hindcasting of Equatorial Spread F Using Seasonal Empirical Models

NASA Astrophysics Data System (ADS)

Aswathy, R. P.; Manju, G.

2018-02-01

The role of gravity waves in modulating equatorial spread F (ESF) day-to-day variability is investigated using ionosonde data at Trivandrum (geographic coordinates, 8.5°N, 77°E; mean geomagnetic latitude -0.3°N) a magnetic equatorial location. A novel empirical model that incorporates the combined effects of electrodynamics and gravity waves in modulating ESF occurrence during autumnal equinox season was presented by Aswathy and Manju (2017). In the present study, the height variations of the requisite gravity wave seed perturbations for ESF are examined for the vernal equinoxes, summer solstices, and winter solstices of different years. Subsequently, the empirical model, incorporating the electrodynamical effects and the gravity wave modulation, valid for each of the seasons is developed. Accordingly, for each season, the threshold curve may be demarcated provided the solar flux index (F10.7) is known. The empirical models are validated using the data for high, moderate, and low solar activity years corresponding to each season. In the next stage, this model is to be fine tuned to facilitate the prediction of ESF well before its onset.

Effects of vernal equinox solar eclipse on temperature and wind direction in Switzerland

NASA Astrophysics Data System (ADS)

Eugster, Werner; Emmel, Carmen; Wolf, Sebastian; Buchmann, Nina; McFadden, Joseph P.; Whiteman, Charles David

2017-12-01

The vernal equinox total solar eclipse of 20 March 2015 produced a maximum occultation of 65.8-70.1 % over Switzerland during the morning hours (09:22 to 11:48 CET). Skies were generally clear over the Swiss Alps due to a persistent high-pressure band between the UK and Russia associated with a rather weak pressure gradient over the continent. To assess the effects of penumbral shading on near-surface meteorology across Switzerland, air temperature data measured at 10 min intervals at 184 MeteoSwiss weather stations were used. Wind speed and direction data were available from 165 of these stations. Additionally, six Swiss FluxNet eddy covariance flux (ECF) sites provided turbulent measurements at 20 Hz resolution. During maximum occultation, the temperature drop was up to 5.8 K at a mountain site where cold air can pool in a topographic depression. The bootstrapped average of the maximum temperature drops of all 184 MeteoSwiss sites during the solar eclipse was 1.51 ± 0.02 K (mean ± SE). A detailed comparison with literature values since 1834 showed a temperature decrease of 2.6 ± 1.7 K (average of all reports), with extreme values up to 11 K. On fair weather days under weak larger-scale pressure gradients, local thermo-topographic wind systems develop that are driven by small-scale pressure and temperature gradients. At one ECF site, the penumbral shading delayed the morning transition from down-valley to up-valley wind conditions. At another site, it prevented this transition from occurring at all. Data from the 165 MeteoSwiss sites measuring wind direction did not show a consistent pattern of wind direction response to the passing of the penumbral shadow. These results suggest that the local topographic setting had an important influence on the temperature drop and the wind flow patterns during the eclipse. A significant cyclonic effect of the passing penumbral shadow was found in the elevation range ≈ 1700-2700 m a. s. l., but not at lower elevations of the Swiss Plateau. This contrasts with an earlier theory that the anticyclonic outflow should reach as far as ≈ 2400 km from the center of the eclipse, which would have included all of Switzerland during the 2015 eclipse. Thus, measurable effects of penumbral shading on the local wind system could be even found at ≈ 2000 km from the path of the eclipse (that is, Switzerland during the 2015 eclipse), and our results tend to lend support to a newer theory that the anticyclonic cold-air outflow from the center of the eclipse only extends ≈ 1600 km outwards, with cyclonic flow beyond that distance.

Low temperature sensing in tulip (Tulipa gesneriana L.) is mediated through an increased response to auxin.

PubMed

Rietveld, P L; Wilkinson, C; Franssen, H M; Balk, P A; van der Plas, L H; Weisbeek, P J; Douwe de Boer, A

2000-03-01

Tulip (Tulipa gesneriana L.) is a bulbous plant species that requires a period of low temperature for proper growth and flowering. The mechanism of sensing the low temperature period is unknown. The study presented in this paper shows that the essential developmental change in tulip bulbs during cold treatment is an increase in sensitivity to the phytohormone auxin. This is demonstrated using a model system consisting of isolated internodes grown on tissue culture medium containing different combinations of the phytohormones auxin and gibberellin. Using mathematical modelling, equations taken from the field of enzyme kinetics were fitted through the data. By doing so it became apparent that longer periods of low temperature resulted in an increased maximum response at a lower auxin concentration. Besides the cold treatment, gibberellin also enhances the response to auxin in the internodes in this in vitro system. A working model describing the relationship between the cold requirement, gibberellin action and auxin sensitivity is put forward. Possible analogies with other cold-requiring processes such as vernalization and stratification, and the interaction of auxin and gibberellin in the stalk elongation process in other plant species are discussed.

Epidemiology of allergic conjunctivitis: clinical appearance and treatment patterns in a population-based study.

PubMed

Leonardi, Andrea; Castegnaro, Angela; Valerio, Alvise La Gloria; Lazzarini, Daniela

2015-10-01

To analyse the most recently published studies on the prevalence of allergic conjunctivitis alone or in association with allergic rhinitis, and the clinical and demographic aspects of the disease. Allergic conjunctivitis or conjunctival symptoms are present in 30-71% of patients with allergic rhinitis. Allergic conjunctivitis alone has been estimated in 6-30% of the general population and in up to 30% in children alone or in association with allergic rhinitis. Seasonal allergic conjunctivitis is the most frequent form; however, studies from tertiary, ophthalmology referral centers report that the chronic forms, such as vernal and atopic keratoconjunctivitis, are the most frequently seen by ophthalmologists. A recent large survey performed at a national level involving 304 ophthalmologists showed that the majority of patients with allergic conjunctivitis suffer annually of few episodes of mild ,intermittent conjunctivitis. However, 30% of patients are affected by frequent episodes with intense and persistent symptoms. Treatment is frequently not appropriate. Even though allergic conjunctivitis is often associated to allergic rhinitis, epidemiology studies frequently do not include specific ophthalmological evaluations. An understanding of allergic conjunctivitis disease, its prevalence, demographics and treatment paradigms will provide important information towards understanding its pharmacoeconomics and burden on the national health systems.

Descriptive risk assessment of the effects of acidic deposition on Rocky Mountain amphibians

USGS Publications Warehouse

Corn, Paul Stephen; Vertucci, Frank A.

1992-01-01

We evaluated the risk of habitat acidification to the six species of amphibians that occur in the mountains of Colorado and Wyoming. Our evaluation included extrinsic environmental factors (habitat sensitivity and amount of acidic atmospheric deposition) and species-specific intrinsic factors (sensitivity to acid conditions, habitat preferences, and timing of breeding). Only one of 57 surveyed localities had both acid neutralizing capacity μeq/L and sulfate deposition >10 kg/ha/yr, extrinsic conditions with a possible risk of acidification. Amphibian breeding habitats in the Rocky Mountains do not appear to be sufficiently acidic to kill amphibian embryos. Some species breed in high-elevation vernal pools during snowmelt, and an acidic pulse during snowmelt may pose a risk to embryos of these species. However, the acidic pulse, if present, probably occurs before open water appears and before breeding begins. Although inherent variability of amphibian population size may make detection of declines from anthropogenic effects difficult, acidic deposition is unlikely to have caused the observed declines of Bufo boreas and Rana pipiens in Colorado and Wyoming. Amphibians in the Rocky Mountains are not likely to be at risk with acidification inputs at present levels.

Temporary wetlands: Challenges and solutions to conserving a ‘disappearing’ ecosystem

USGS Publications Warehouse

Calhoun, Aram J.K.; Mushet, David M.; Bell, Kathleen P.; Boix, Dani; Fitzsimons, James A.; Isselin-Nondedeu, Francis

2017-01-01

Frequent drying of ponded water, and support of unique, highly specialized assemblages of often rare species, characterize temporary wetlands, such as vernal pools, gilgais, and prairie potholes. As small aquatic features embedded in a terrestrial landscape, temporary wetlands enhance biodiversity and provide aesthetic, biogeochemical, and hydrologic functions. Challenges to conserving temporary wetlands include the need to: (1) integrate freshwater and terrestrial biodiversity priorities; (2) conserve entire ‘pondscapes’ defined by connections to other aquatic and terrestrial systems; (3) maintain natural heterogeneity in environmental gradients across and within wetlands, especially gradients in hydroperiod; (4) address economic impact on landowners and developers; (5) act without complete inventories of these wetlands; and (6) work within limited or non-existent regulatory protections. Because temporary wetlands function as integral landscape components, not singly as isolated entities, their cumulative loss is ecologically detrimental yet not currently part of the conservation calculus. We highlight approaches that use strategies for conserving temporary wetlands in increasingly human-dominated landscapes that integrate top-down management and bottom-up collaborative approaches. Diverse conservation activities (including education, inventory, protection, sustainable management, and restoration) that reduce landowner and manager costs while achieving desired ecological objectives will have the greatest probability of success in meeting conservation goals.

Congenital keratoglobus with multiple cardiac anomalies: a case presentation and literature review.

PubMed

Ozer, Pinar A; Yalniz-Akkaya, Zuleyha

2015-07-01

Keratoglobus is a rare condition of bilateral corneal ectasia, which results in high myopia, irregular astigmatism, scarring, and rarely spontaneous globe rupture. Globoid protrusion of a clear, diffusely thin cornea is the pathology. The congenital form has been associated with blue sclera in which there is a systemic connective tissue disorder with abnormal collagen synthesis like Ehlers-Danlos syndrome, Marfan syndrome, and osteogenesis imperfecta. Some concomitant abnormalities reported with kertoglobus include joint hypermobility, dental and skeletal abnormalities, osteal fragility, and deafness. Acquired forms have been reported to be associated with vernal keratoconjunctivitis and thyroid ophthalmopathy. We report the case of a 16-year-old boy with keratoglobus who presented with a history of photophobia and a low vision in both eyes since birth. He has been followed up by our pediatric cardiology department due to multiple cardiac anomalies. He had hypermobility of large joints, easy bruising, thin and hyperextensible skin with visible veins, which were also described in his elder brother. We aimed to discuss the etiology and the association of keratoglobus with some systemic abnormalities caused by collogen tissue disturbance, and make a brief review about the recent literature concerning the management of keratoglobus patients.

Functional FRIGIDA allele enhances drought tolerance by regulating the P5CS1 pathway in Arabidopsis thaliana.

PubMed

Chen, Qian; Zheng, Yan; Luo, Landi; Yang, Yongping; Hu, Xiangyang; Kong, Xiangxiang

2018-01-01

Flowering at the right time is important for the reproductive success of plants and their response to environmental stress. In Arabidopsis, a major determinant of natural variation in flowering time is FRIGIDA (FRI). In the present study, we show that overexpression of the functional FRIGIDA gene in wild-type Col background (ColFRI) positively enhances the drought tolerance by activating P5CS1 expression and promoting proline accumulation during water stress. Furthermore, no significant changes in FRI gene and protein expression levels were observed with drought treatment, whereas P5CS1 protein expression significantly increased. In contrast, vernalization treatment efficiently reduced P5CS1 expression levels and resulted in a decrease in drought tolerance in the ColFRI plants. The flc mutants with a functional FRI background also relieved FRI-mediated activation of P5CS1 during drought tolerance. Taken together, our findings reveal the novel function of FRI in enhancing drought resistance through its downstream P5CS1 pathway during water-deficit stress, which is dependent on its target, the FLC gene. Copyright © 2017 Elsevier Inc. All rights reserved.

Monitoring the vernal advancement and retrogradation (green wave effect) of natural vegetation

NASA Technical Reports Server (NTRS)

Rouse, J. W., Jr. (Principal Investigator)

1973-01-01

The author has identified the following significant results. Emphasis has been given to an inventory of land resource types and land use at the ten Great Plains Corridor test sites. A resource and land use classification system was developed which uses available soil survey information and interpretations from NASA obtained high flight aerial photography to locate discrete areas of similar rangeland vegetation. Existing classification systems, even those developed for use with remote sensor data, were found to be inadequate for this project. This system is expected to be of general use for remote sensing related to land use and management. It has specific applicability to any effort aimed at regional use of ERTS-1 MSS digital data products. A preliminary assessment of the relative importance of rangelands in the Great Plains Corridor states indicates that the value of the livestock industry supported by this resource exceeds 23 billion dollars. The development of a Rangeland Feed Conditions index for this region could be used by more than 400,000 farm and ranch operators involved in the production of more than 40% of the nation's beef and much of the country's grain.

Thermal Emission Spectrometer Results: Mars Atmospheric Thermal Structure and Aerosol Distribution

NASA Technical Reports Server (NTRS)

Smith, Michael D.; Pearl, John C.; Conrath, Barney J.; Christensen, Philip R.; Vondrak, Richard R. (Technical Monitor)

2001-01-01

Infrared spectra returned by the Thermal Emission Spectrometer (TES) are well suited for retrieval of the thermal structure and the distribution of aerosols in the Martian atmosphere. Combined nadir- and limb-viewing spectra allow global monitoring of the atmosphere up to 0.01 mbar (65 km). We report here on the atmospheric thermal structure and the distribution of aerosols as observed thus far during the mapping phase of the Mars Global Surveyor mission. Zonal and temporal mean cross sections are used to examine the seasonal evolution of atmospheric temperatures and zonal winds during a period extending from northern hemisphere mid-summer through vernal equinox (L(sub s) = 104-360 deg). Temperature maps at selected pressure levels provide a characterization of planetary-scale waves. Retrieved atmospheric infrared dust opacity maps show the formation and evolution of regional dust storms during southern hemisphere summer. Response of the atmospheric thermal structure to the changing dust loading is observed. Maps of water-ice clouds as viewed in the thermal infrared are presented along with seasonal trends of infrared water-ice opacity. Uses of these observations for diagnostic studies of the dynamics of the atmosphere are discussed.

Numerical simulation of the 6 day wave effects on the ionosphere: Dynamo modulation

NASA Astrophysics Data System (ADS)

Gan, Quan; Wang, Wenbing; Yue, Jia; Liu, Hanli; Chang, Loren C.; Zhang, Shaodong; Burns, Alan; Du, Jian

2016-10-01

The Thermosphere-Ionosphere-Mesosphere Electrodynamics General Circulation Model (TIME-GCM) is used to theoretically study the 6 day wave effects on the ionosphere. By introducing a 6 day perturbation with zonal wave number 1 at the model lower boundary, the TIME-GCM reasonably reproduces the 6 day wave in temperature and horizontal winds in the mesosphere and lower thermosphere region during the vernal equinox. The E region wind dynamo exhibits a prominent 6 day oscillation that is directly modulated by the 6 day wave. Meanwhile, significant local time variability (diurnal and semidiurnal) is also seen in wind dynamo as a result of altered tides due to the nonlinear interaction between the 6 day wave and migrating tides. More importantly, the perturbations in the E region neutral winds (both the 6 day oscillation and tidal-induced short-term variability) modulate the polarization electric fields, thus leading to the perturbations in vertical ion drifts and ionospheric F2 region peak electron density (NmF2). Our modeling work shows that the 6 day wave couples with the ionosphere via both the direct neutral wind modulation and the interaction with atmospheric tides.

Micropropagation of onion (Allium cepa L.) from immature inflorescences.

PubMed

Marinangeli, Pablo

2013-01-01

In vitro plant production by direct organogenesis from immature flower heads is an ideal approach for clonal propagation of onions (Allium cepa L.). This technique ensures genetic stability, high propagation rate, and maintains donor plant of explants with an advantage over other means of in vitro regeneration. Onion micropropagation is usually applied in breeding programs, maintenance, and multiplication of cytoplasmic-male sterile lines for hybrid production, germplasm conservation, and as a tool for the application of other biotechnologies. For in vitro culture, mature onion bulbs are induced to reproductive phase by vernalization and forced to inflorescence initiation. Immature umbels are dissected from bulbs or cut directly when they appear from the pseudostem among the leaves. Disinfected inflorescences are cultivated in BDS basal medium supplemented with 30 g/L sucrose, 0.1 mg/L naphthalene acetic acid, 1 mg/L N (6)-benzyladenine, and 8 g/L agar, pH 5.5, under 16 h photoperiod white fluorescent light (PPD: 50-70 μmol/m(2)s) for 35 days. The regenerated shoot clumps are divided and subculture under the same conditions. For bulbification phase, the individual shoots are cultured in BDS basal medium containing 90 g/L sucrose, without plant growth regulators, pH 5.5, under 16 h photoperiod. Microbulbs can be directly cultivated ex vitro without acclimation.

Abrupt stop of deep water turnover with lake warming: Drastic consequences for algal primary producers.

PubMed

Yankova, Yana; Neuenschwander, Stefan; Köster, Oliver; Posch, Thomas

2017-10-23

After strong fertilization in the 20 th century, many deep lakes in Central Europe are again nutrient poor due to long-lasting restoration (re-oligotrophication). In line with reduced phosphorus and nitrogen loadings, total organismic productivity decreased and lakes have now historically low nutrient and biomass concentrations. This caused speculations that restoration was overdone and intended fertilizations are needed to ensure ecological functionality. Here we show that recent re-oligotrophication processes indeed accelerated, however caused by lake warming. Rising air temperatures strengthen thermal stabilization of water columns which prevents thorough turnover (holomixis). Reduced mixis impedes down-welling of oxygen rich epilimnetic (surface) and up-welling of phosphorus and nitrogen rich hypolimnetic (deep) water. However, nutrient inputs are essential for algal spring blooms acting as boost for annual food web successions. We show that repeated lack (since 1977) and complete stop (since 2013) of holomixis caused drastic epilimnetic phosphorus depletions and an absence of phytoplankton spring blooms in Lake Zurich (Switzerland). By simulating holomixis in experiments, we could induce significant vernal algal blooms, confirming that there would be sufficient hypolimnetic phosphorus which presently accumulates due to reduced export. Thus, intended fertilizations are highly questionable, as hypolimnetic nutrients will become available during future natural or artificial turnovers.

Evaluation of reference genes for gene expression studies in radish (Raphanus sativus L.) using quantitative real-time PCR.

PubMed

Xu, Yuanyuan; Zhu, Xianwen; Gong, Yiqin; Xu, Liang; Wang, Yan; Liu, Liwang

2012-08-03

Real-time quantitative reverse transcription PCR (RT-qPCR) is a rapid and reliable method for gene expression studies. Normalization based on reference genes can increase the reliability of this technique; however, recent studies have shown that almost no single reference gene is universal for all possible experimental conditions. In this study, eight frequently used reference genes were investigated, including Glyceraldehyde-3-phosphate dehydrogenase (GAPDH), Actin2/7 (ACT), Tubulin alpha-5 (TUA), Tubulin beta-1 (TUB), 18S ribosomal RNA (18SrRNA), RNA polymerase-II transcription factor (RPII), Elongation factor 1-b (EF-1b) and Translation elongation factor 2 (TEF2). Expression stability of candidate reference genes was examined across 27 radish samples, representing a range of tissue types, cultivars, photoperiodic and vernalization treatments, and developmental stages. The eight genes in these sample pools displayed a wide range of Ct values and were variably expressed. Two statistical software packages, geNorm and NormFinder showed that TEF2, RPII and ACT appeared to be relatively stable and therefore the most suitable for use as reference genes. These results facilitate selection of desirable reference genes for accurate gene expression studies in radish. Copyright © 2012 Elsevier Inc. All rights reserved.

Sample Return from Ancient Hydrothermal Springs

NASA Technical Reports Server (NTRS)

Allen, Carlton C.; Oehler, Dorothy Z.

2008-01-01

Hydrothermal spring deposits on Mars would make excellent candidates for sample return. Molecular phylogeny suggests that that life on Earth may have arisen in hydrothermal settings [1-3], and on Mars, such settings not only would have supplied energy-rich waters in which martian life may have evolved [4-7] but also would have provided warm, liquid water to martian life forms as the climate became colder and drier [8]. Since silica, sulfates, and clays associated with hydrothermal settings are known to preserve geochemical and morphological remains of ancient terrestrial life [9-11], such settings on Mars might similarly preserve evidence of martian life. Finally, because formation of hydrothermal springs includes surface and subsurface processes, martian spring deposits would offer the potential to assess astrobiological potential and hydrological history in a variety of settings, including surface mineralized terraces, associated stream deposits, and subsurface environments where organic remains may have been well protected from oxidation. Previous attempts to identify martian spring deposits from orbit have been general or limited by resolution of available data [12-14]. However, new satellite imagery from HiRISE has a resolution of 28 cm/pixel, and based on these new data, we have interpreted several features in Vernal Crater, Arabia Terra as ancient hydrothermal springs [15, 16].

Allergic conjunctivitis in Asia.

PubMed

Thong, Bernard Yu-Hor

2017-04-01

Allergic conjunctivitis (AC), which may be acute or chronic, is associated with rhinitis in 30%-70% of affected individuals, hence the term allergic rhinoconjunctivitis (AR/C). Seasonal and perennial AC is generally milder than the more chronic and persistent atopic and vernal keratoconjunctivitis. Natural allergens like house dust mites (HDM), temperate and subtropical grass and tree pollen are important triggers that drive allergic inflammation in AC in the Asia-Pacific region. Climate change, environmental tobacco smoke, pollutants derived from fuel combustion, Asian dust storms originating from central/north Asia and phthalates may also exacerbate AR/C. The Allergies in Asia Pacific study and International Study of Asthma and Allergies in Childhood provide epidemiological data on regional differences in AR/C within the region. AC significantly impacts the quality of life of both children and adults, and these can be measured by validated quality of life questionnaires on AR/C. Management guidelines for AC involve a stepped approach depending on the severity of disease, similar to that for allergic rhinitis and asthma. Topical calcineurin inhibitors are effective in certain types of persistent AC, and sublingual immunotherapy is emerging as an effective treatment option in AR/C to grass pollen and HDM. Translational research predominantly from Japan and Korea involving animal models are important for the potential development of targeted pharmacotherapies for AC.

Genetic utility of natural history museum specimens: endangered fairy shrimp (Branchiopoda, Anostraca)

PubMed Central

Wall, Adam R.; Campo, Daniel; Wetzer, Regina

2014-01-01

Abstract We examined the potential utility of museum specimens as a source for genetic analysis of fairy shrimp. Because of loss of their vernal pool habitat, some fairy shrimp (including Branchinecta sandiegonensis and Branchinecta lynchi) are listed as threatened or endangered in Southern California by the United States Fish and Wildlife Service. Management of those species requires extensive population genetics studies and the resolution of important genetic complexity (e.g. possible hybridization between endangered and non-endangered species). Regulations mandating deposition of specimens of listed species have resulted in thousands of specimens accessioned into the Natural History Museum of Los Angeles County that have been preserved in a variety of solutions. We subsampled those specimens, as well as other Anostraca with known collection and preservation histories, to test their potential for genetic analysis by attempting DNA extraction and amplification for mt16SrDNA. Fixation and preservation in not denatured ethanol had a far greater sequencing success rate than other (and unknown) fixatives and preservatives. To maximize scientific value we recommend field preservation in 95% not denatured ethanol (or, if pure ethanol is unavailable, high-proof drinking spirits, e.g. Everclear™, or 151 proof white rum), followed by storage in 95% not denatured ethanol. PMID:25561827

Ecological Processes of Isolated Wetlands: Ecosystem Services and the Significant Nexus (Invited)

NASA Astrophysics Data System (ADS)

Lane, C.; Autrey, B.; D'Amico, E.

2013-12-01

Geographically isolated wetlands occur throughout the US and are characterized by a wetland system completely surrounded by uplands. Examples include prairie potholes, woodland seasonal (i.e., vernal) pools, cypress domes, playas, and other such systems. Decisions by the US Supreme Court in 2001 and 2006 have affected the jurisdictional status of geographically isolated wetlands such that those failing to have a demonstrable 'significant nexus' to navigable waters may have no federal protection under the Clean Water Act. These systems are typically small and, as such, may be under-counted in assessments of area and abundance. Areal extent is a portion of the information required to characterize the functions associated with geographically isolated wetlands and understanding both site-specific and larger-scale processes are also required to better quantify those functions. In addition, quantifying anthropogenic effects on system processing informs our understanding of the contributions and the connectivity of geographically isolated wetlands to other waters. This presentation focuses on both efforts to quantify the contribution of geographically isolated wetlands to system-scale processes, focusing on nutrient assimilation and hydrologic storage, as well as concurrent research to identify their locations at multiple scales. Findings from this research may help elucidate the link between geographically isolated wetlands and other systems, and may inform discussions on ecosystem services provided by geographically isolated wetlands.

Transgenic Russian wildrye (Psathyrostachys juncea) plants obtained by biolistic transformation of embryogenic suspension cells.

PubMed

Wang, Z-Y; Bell, J; Lehmann, D

2004-07-01

Russian wildrye (Psathyrostachys juncea (Fisch.) Nevski) is a cool-season forage species well adapted to semi-arid climates. We are interested in developing biotechnological methods to improve this monocot forage species. Single genotype-derived embryogenic suspension cultures were established from the Russian wildrye cultivar Bozoisky-Select, and were used as target cells for biolistic transformation. A chimeric hygromycin phosphotransferase gene (hph) was used as the selectable marker, and a chimeric beta-glucuronidase (gusA) gene was co-transformed with hph. Resistant calli were obtained from 29% of the bombarded dishes after selection with 200 mg/l hygromycin. Plants were regenerated from 45% of the hygromycin resistant calli. Thirty-six transgenic Russian wildrye plants were recovered after microprojectile bombardment of suspension cells and subsequent hygromycin selection. The transgenic nature of the regenerated plants was demonstrated by Southern hybridization analysis using undigested and digested genomic DNA samples. When a second gene (gusA) was co-transformed with hph, a reasonably high co-transformation frequency of 78% was observed. Transgenic expression of gusA was confirmed by GUS staining of shoot and leaf tissues. Fertile transgenic plants were obtained after two winters of vernalization under field conditions. This is the first report on the generation of transgenic plants in Russian wildrye.

Fremont Lake, Wyoming - Preliminary survey of a large mountain lake: A section in Geological Survey research 1972, Chapter D

USGS Publications Warehouse

Rickert, David A.; Leopold, Luna Bergere

1972-01-01

Fremont Lake, at an altitude of 2,261 m, has an area of 20.61 km2 and a volume of 1.69 km3. The maximum depth is 185 m, which makes it the seventh deepest natural lake in the conterminous United States. Theoretical renewal time is 11.1 years. Temperature data for 1971 indicate that vernal circulation extended to a depth of less than 90 m. The summer heat income was 19,450 cal/cm2. The dissolved-oxygen curve is orthograde, with a slight metalimnetic maximum, and a tendency toward decreasing concentrations at depth. At 180 m, oxygen was at 80 percent of saturation in late July 1970. The lake has a remarkably low dissolved-solids content of 12.8 mg/l, making it one of the most dilute medium-sized lakes in the world. Detailed chemical data are given for the water column at three sites in the lake and for the influent and effluent streams. Net plankton included representatives of seven genera of phytoplankters and three genera of zooplankters. A reconnaissance indicated substantially no bacteriological contamination in the lake, but there was an appreciable amount in two minor streams in the vicinity of a summer-home colony.

Developmental responses of bread wheat to changes in ambient temperature following deletion of a locus that includes FLOWERING LOCUS T1.

PubMed

Dixon, Laura E; Farré, Alba; Finnegan, E Jean; Orford, Simon; Griffiths, Simon; Boden, Scott A

2018-01-04

FLOWERING LOCUS T (FT) is a central integrator of environmental signals that regulates the timing of vegetative to reproductive transition in flowering plants. In model plants, these environmental signals have been shown to include photoperiod, vernalization, and ambient temperature pathways, and in crop species, the integration of the ambient temperature pathway remains less well understood. In hexaploid wheat, at least 5 FT-like genes have been identified, each with a copy on the A, B, and D genomes. Here, we report the characterization of FT-B1 through analysis of FT-B1 null and overexpression genotypes under different ambient temperature conditions. This analysis has identified that the FT-B1 alleles perform differently under diverse environmental conditions; most notably, the FT-B1 null produces an increase in spikelet and tiller number when grown at lower temperature conditions. Additionally, absence of FT-B1 facilitates more rapid germination under both light and dark conditions. These results provide an opportunity to understand the FT-dependent pathways that underpin key responses of wheat development to changes in ambient temperature. This is particularly important for wheat, for which development and grain productivity are sensitive to changes in temperature. © 2018 The Authors Plant, Cell & Environment Published by John Wiley & Sons Ltd.

Study of the Light Received Characteristics of a Plant-Shoot-Light-Condensing System with Simple Leaves or Lobed Leaves

NASA Astrophysics Data System (ADS)

Obara, Shin'ya

Plant shoot configurations evolve so that maximum sunlight may be obtained. The objective of this study is to develop a compact light-condensing system mimicking a plant shoot configuration that is applicable to a light source from a large area. In this paper, the relationship between the position of a light source (the sun) and the rate at which light is absorbed by each leaf was investigated in detail for plant shoot models of a dogwood (simple leaf) and a ginkgo tree (lobed leaf). The rate of light quantum received in each leaf model is reported to an analysis program that uses cross entropy (CE). The analyses showed that the peak amount of light received in the plant-shoot-light-condensing system was during February (vernal equinox) and October (autumnal equinox). Similarly, the rate of light quantum received in each leaf was measured with the CE. The results found that the plant-shoot-light-condensing system that maximizes the amount of light received has differences in the light received in each leaf. Furthermore, the light-condensing characteristics of the ginkgo biloba model are better than the dogwood model. The light-condensing characteristics of a leaf are influenced by the size, a lobe, shape, and the length of the branch.

Ectopic Expression of a WRKY Homolog from Glycine soja Alters Flowering Time in Arabidopsis

PubMed Central

Liu, Baohui; Zhu, Dan; Bai, Xi; Cai, Hua; Ji, Wei; Cao, Lei; Wu, Jing; Wang, Mingchao; Ding, Xiaodong; Zhu, Yanming

2013-01-01

Flowering is a critical event in the life cycle of plants; the WRKY-type transcription factors are reported to be involved in many developmental processes sunch as trichome development and epicuticular wax loading, but whether they are involved in flowering time regulation is still unknown. Within this study, we provide clear evidence that GsWRKY20, a member of WRKY gene family from wild soybean, is involved in controlling plant flowering time. Expression of GsWRKY20 was abundant in the shoot tips and inflorescence meristems of wild soybean. Phenotypic analysis showed that GsWRKY20 over-expression lines flowered earlier than the wild-type plants under all conditions: long-day and short-day photoperiods, vernalization, or exogenous GA3 application, indicating that GsWRKY20 may mainly be involved in an autonomous flowering pathway. Further analyses by qRT-PCR and microarray suggests that GsWRKY20 accelerating plant flowering might primarily be through the regulation of flowering-related genes (i.e., FLC, FT, SOC1 and CO) and floral meristem identity genes (i.e., AP1, SEP3, AP3, PI and AG). Our results provide the evidence demonstrating the effectiveness of manipulating GsWRKY20 for altering plant flowering time. PMID:23991184

Correlations Between Allergen-Specific IgE Serum Levels in Patients With Ocular Allergy.

PubMed

Polido, Júlia Gomes Fernandes; Cabral, Thiago; Perini, Paula de Resende Campos; Fernandes, Maria de Fátima Marcelos; de Freitas, Denise; dos Santos Araújo, Maria Emília Xavier; Serracarbassa, Pedro Durães

2015-09-01

To evaluate ocular allergies in patients at the Hospital do Servidor Publico Estadual de Sao Paulo (HSPE) and the correlations with serum allergen-specific immunoglobulin E levels. We performed a longitudinal study of patients with ocular allergies who were treated at the Cornea and Immunology and Allergy Department. Patients underwent an ophthalmologic examination to identify their primary presenting signs and symptoms. The allergy types were divided into 4 groups. We conducted the following laboratory tests and measurements: blood count, eosinophil count, total serum IgE, and specific IgE. Among 61 patients, 16 (26.2%) had a clinical diagnosis of seasonal allergic conjunctivitis, 23 (37.7%) had perennial allergic conjunctivitis, 19 (31.1%) had vernal keratoconjunctivitis, and 3 (4.9%) had atopic keratoconjunctivitis. Mixed dust mites were positive in 94.9% of patients. Dermatophagoides pteronyssinus (dp) and Dermatophagoides farinae (df) antigens were positive in 93.2% of patients followed by Blattella germanica, Blomia tropicalis, and mixed animal epithelia (81%, 75.9%, and 25.8%, respectively). Perennial allergic conjunctivitis was the most prevalent disorder and demonstrated higher positivity in class V/VI for specific antigens (mixed dust mites, dp, and df), indicating high antigenicity. Dust mites, D. pteronyssinus, D. farinae, B. germanica, and B. tropicalis were the primary triggers of the studied ocular allergies.

Growth habit determination by the balance of histone methylation activities in Arabidopsis

PubMed Central

Ko, Jong-Hyun; Mitina, Irina; Tamada, Yosuke; Hyun, Youbong; Choi, Yeonhee; Amasino, Richard M; Noh, Bosl; Noh, Yoo-Sun

2010-01-01

In Arabidopsis, the rapid-flowering summer-annual versus the vernalization-requiring winter-annual growth habit is determined by natural variation in FRIGIDA (FRI) and FLOWERING LOCUS C (FLC). However, the biochemical basis of how FRI confers a winter-annual habit remains elusive. Here, we show that FRI elevates FLC expression by enhancement of histone methyltransferase (HMT) activity. EARLY FLOWERING IN SHORT DAYS (EFS), which is essential for FRI function, is demonstrated to be a novel dual substrate (histone H3 lysine 4 (H3K4) and H3K36)-specific HMT. FRI is recruited into FLC chromatin through EFS and in turn enhances EFS activity and engages additional HMTs. At FLC, the HMT activity of EFS is balanced by the H3K4/H3K36- and H3K4-specific histone demethylase (HDM) activities of autonomous-pathway components, RELATIVE OF EARLY FLOWERING 6 and FLOWERING LOCUS D, respectively. Loss of HDM activity in summer annuals results in dominant HMT activity, leading to conversion to a winter-annual habit in the absence of FRI. Thus, our study provides a model of how growth habit is determined through the balance of the H3K4/H3K36-specific HMT and HDM activities. PMID:20711170

Distribution and effects of acidic deposition on wildlife and ecosystems

USGS Publications Warehouse

Stromborg, K.L.; Longcore, J.R.; Kaemar, Peter; Legath, J.

1987-01-01

Acidic deposition occurs over most of the United States and the deposition patterns and theoretical vulnerabilities of aquatic ecosystems to chemical changes can be delineated, but few data exist on concomitant biological effects. Hypothetical direct effects are limited primarily to toxicity of various heavy metals mobilized at reduced pH. Results of studies in Scandinavia suggest that aluminum interferes with avian reproduction near acidified lakes. Some amphibian populations located on acid-vulnerable substrates may be adversely affected by reduced pH in the vernal pools used for egg laying and larval growth. Indirect effects on populations are difficult to detect because few historical data exist for wildlife populations and trophic relationships in vulnerable areas. Current research in the U.S.A. focuses on measuring habitat characteristics, food availability, and avian use of vulnerable wetland habitats. Results of Scandinavian studies suggest that some species of waterfowl may prefer acidified, I fish-free habitats because invertebrates essential for meeting nutritional requirements are more easily obtained in the absence of competition from fish. However, avian species dependent on fish would be absent from these habitats. Alteration of either the vegetative structure or primary productivity of wetlands might indirectly affect avian populations by causing decreased invertebrate productivity and consequent food limitations for birds.

Aplication of giberelins on flowering and yield of two varieties of shallot in lowland

NASA Astrophysics Data System (ADS)

Triharyanto, E.; Nyoto, S.; Yusrifani, I.

2018-03-01

Shallot is one of horticultural commodities which has difficulties in flowering and producing seeds. Flowering of shallot generally occurs in highlands at 9-12° C. Flowering in lowland can be supported with vernalization or replace cold temperature with gibberelin (GA3). This research is aimed to determine the effect of varieties, the concentration of GA3 applied and their interaction on flowering and yield of shallots grown in the lowlands, 98 m altitude with Vertisol-type soil. The research was conducted in a randomized complete block design (RCBD) with two factors, which were varieties (V): Bima and Mentes and concentration of GA3 (C) 0 ppm, 50 ppm, 100 ppm, 150 ppm and 200 ppm and repeated three times. Varieties have significant effect (P<0.05) on plant height, leaf number, the number of bulbs per clumps, weight of fresh bulbs per clumps, and percentage of small and large bulbs produced. Bima varieties were able to flower and produced seeds, while Mentes varieties could not produce flowers and seeds. GA3 concentration have no significant effect in all of the observed component. GA3 can’t replace cold temperature for supported flowering in varieties Mentes which were planted in lowlands. There was interaction between varieties and GA3 concentration occurs in variable percentage of small and large bulbs.

Getting back to nature: a reality check for experiments in controlled environments.

PubMed

Annunziata, Maria Grazia; Apelt, Federico; Carillo, Petronia; Krause, Ursula; Feil, Regina; Mengin, Virginie; Lauxmann, Martin A; Köhl, Karin; Nikoloski, Zoran; Stitt, Mark; Lunn, John E; Raines, Christine

2017-07-20

Irradiance from sunlight changes in a sinusoidal manner during the day, with irregular fluctuations due to clouds, and light-dark shifts at dawn and dusk are gradual. Experiments in controlled environments typically expose plants to constant irradiance during the day and abrupt light-dark transitions. To compare the effects on metabolism of sunlight versus artificial light regimes, Arabidopsis thaliana plants were grown in a naturally illuminated greenhouse around the vernal equinox, and in controlled environment chambers with a 12-h photoperiod and either constant or sinusoidal light profiles, using either white fluorescent tubes or light-emitting diodes (LEDs) tuned to a sunlight-like spectrum as the light source. Rosettes were sampled throughout a 24-h diurnal cycle for metabolite analysis. The diurnal metabolite profiles revealed that carbon and nitrogen metabolism differed significantly between sunlight and artificial light conditions. The variability of sunlight within and between days could be a factor underlying these differences. Pairwise comparisons of the artificial light sources (fluorescent versus LED) or the light profiles (constant versus sinusoidal) showed much smaller differences. The data indicate that energy-efficient LED lighting is an acceptable alternative to fluorescent lights, but results obtained from plants grown with either type of artificial lighting might not be representative of natural conditions. © The Author 2017. Published by Oxford University Press on behalf of the Society for Experimental Biology.

Double-observer approach to estimating egg mass abundance of vernal pool breeding amphibians

USGS Publications Warehouse

Grant, E.H.C.; Jung, R.E.; Nichols, J.D.; Hines, J.E.

2005-01-01

Interest in seasonally flooded pools, and the status of associated amphibian populations, has initiated programs in the northeastern United States to document and monitor these habitats. Counting egg masses is an effective way to determine the population size of pool-breeding amphibians, such as wood frogs (Rana sylvatica) and spotted salamanders (Ambystoma maculatum). However, bias is associated with counts if egg masses are missed. Counts unadjusted for the proportion missed (i.e., without adjustment for detection probability) could lead to false assessments of population trends. We used a dependent double-observer method in 2002-2003 to estimate numbers of wood frog and spotted salamander egg masses at seasonal forest pools in 13 National Wildlife Refuges, 1 National Park, 1 National Seashore, and 1 State Park in the northeastern United States. We calculated detection probabilities for egg masses and examined whether detection probabilities varied by species, observers, pools, and in relation to pool characteristics (pool area, pool maximum depth, within-pool vegetation). For the 2 years, model selection indicated that no consistent set of variables explained the variation in data sets from individual Refuges and Parks. Because our results indicated that egg mass detection probabilities vary spatially and temporally, we conclude that it is essential to use estimation procedures, such as double-observer methods with egg mass surveys, to determine population sizes and trends of these species.

Stratification by cyanobacteria in lakes: a dynamic buoyancy model indicates size limitations met by Planktothrix rubescens filaments.

PubMed

Walsby, Anthony E

2005-11-01

The ability of the Planktothrix rubescens to stratify in Lake Zürich is related to the size and shape of the cyanobacterial filaments. Detailed measurements made in the lake are used in a dynamic computer model of buoyancy regulation to investigate the vertical movements of filaments tracking the depth at which the irradiance would support neutral buoyancy. The movement of the filament lags behind the constantly changing target depth owing to (a) the time taken for the filament to respond to the irradiance by changing its density and (b) the time it takes to move by sinking down or floating up through the water column. The model simulates the stratification depth over a 5-month period of the summer from the continuous measurements of irradiance and weekly measurements of light attenuation and temperature, without any further adjustment over the period. Models using filaments of the size observed in Lake Zürich explain several details of the observed depth changes: smaller planktonic cyanobacteria (e.g. Limnothrix sp.) are unable to migrate fast enough and larger ones (e.g. Anabaena spp.) will overshoot and become entrained in the epilimnion. The model can be used to simulate recruitment of Planktothrix filaments from different depths after vernal stratification. Recruitment of filaments from depths down to 45 m will contribute to the metalimnetic population increase in early July.

An Arabidopsis mutation in translation elongation factor 2 causes superinduction of CBF/DREB1 transcription factor genes but blocks the induction of their downstream targets under low temperatures.

PubMed

Guo, Yan; Xiong, Liming; Ishitani, Manabu; Zhu, Jian-Kang

2002-05-28

Low temperature regulates gene expression in bacteria, yeast, and animals as well as in plants. However, the signal transduction cascades mediating the low temperature responses are not well understood in any organism. To identify components in low temperature signaling genetically, we isolated Arabidopsis thaliana mutants in which cold-responsive genes are no longer induced by low temperatures. One of these mutations, los1-1, specifically blocks low temperature-induced transcription of cold-responsive genes. Surprisingly, cold-induced expression of the early response transcriptional activators, C-repeat/dehydration responsive element binding factors (CBF/DREB1s), is enhanced by the los1-1 mutation. The los1-1 mutation also reduces the capacity of plants to develop freezing tolerance but does not impair the vernalization response. Genetic analysis indicated that los1-1 is a recessive mutation in a single nuclear gene. The LOS1 gene encodes a translation elongation factor 2-like protein. Protein labeling studies show that new protein synthesis is blocked in los1-1 mutant plants specifically in the cold. These results reveal a critical role of new protein synthesis in the proper transduction of low temperature signals. Our results also suggest that cold-induced transcription of CBF/DREB1s is feedback inhibited by their gene products or by products of their downstream target genes.

An Evaluation of Putative Sympatric Speciation within Limnanthes (Limnanthaceae)

PubMed Central

Meyers, Stephen C.; Liston, Aaron; Meinke, Robert

2012-01-01

Limnanthes floccosa ssp. floccosa and L. floccosa ssp. grandiflora are two of five subspecies within Limnanthes floccosa endemic to vernal pools in southern Oregon and northern California. Three seasons of monitoring natural populations have quantified that L. floccosa ssp. grandiflora is always found growing sympatrically with L. floccosa ssp. floccosa and that their flowering times overlap considerably. Despite their subspecific rank within the same species crossing experiments have confirmed that their F1 hybrids are sterile. An analysis of twelve microsatellite markers, with unique alleles in each taxon, also shows exceedingly low levels of gene flow between populations of the two subspecies. Due to the lack of previous phylogenetic resolution among L. floccosa subspecies, we used Illumina next generation sequencing to identify single nucleotide polymorphisms from genomic DNA libraries of L. floccosa ssp. floccosa and L. floccosa ssp. grandiflora. These data were used to identify single nucleotide polymorphisms in the chloroplast, mitochondrial, and nuclear genomes. From these variable loci, a total of 2772 bp was obtained using Sanger sequencing of ten individuals representing all subspecies of L. floccosa and an outgroup. The resulting phylogenetic reconstruction was fully resolved. Our results indicate that although L. floccosa ssp. floccosa and L. floccosa ssp. grandiflora are closely related, they are not sister taxa and therefore likely did not diverge as a result of a sympatric speciation event. PMID:22563502

PORPHOBILINOGEN DEAMINASE Deficiency Alters Vegetative and Reproductive Development and Causes Lesions in Arabidopsis

PubMed Central

Quesada, Víctor; Hricová, Andrea; Ponce, María Rosa; Micol, José Luis

2013-01-01

The Arabidopsis rugosa1 (rug1) mutant has irregularly shaped leaves and reduced growth. In the absence of pathogens, leaves of rug1 plants have spontaneous lesions reminiscent of those seen in lesion-mimic mutants; rug1 plants also express cytological and molecular markers associated with defence against pathogens. These rug1 phenotypes are made stronger by dark/light transitions. The rug1 mutant also has delayed flowering time, upregulation of the floral repressor FLOWERING LOCUS C (FLC) and downregulation of the flowering promoters FT and SOC1/AGL20. Vernalization suppresses the late flowering phenotype of rug1 by repressing FLC. Microarray analysis revealed that 280 nuclear genes are differentially expressed between rug1 and wild type; almost a quarter of these genes are involved in plant defence. In rug1, the auxin response is also affected and several auxin-responsive genes are downregulated. We identified the RUG1 gene by map-based cloning and found that it encodes porphobilinogen deaminase (PBGD), also known as hydroxymethylbilane synthase, an enzyme of the tetrapyrrole biosynthesis pathway, which produces chlorophyll, heme, siroheme and phytochromobilin in plants. PBGD activity is reduced in rug1 plants, which accumulate porphobilinogen. Our results indicate that Arabidopsis PBGD deficiency impairs the porphyrin pathway and triggers constitutive activation of plant defence mechanisms leading to leaf lesions and affecting vegetative and reproductive development. PMID:23308205

A Novel Role for Banana MaASR in the Regulation of Flowering Time in Transgenic Arabidopsis

PubMed Central

Yu, Xiaomeng; Jia, Caihong; Liu, Juhua; Zhang, Jianbin; Wang, Jingyi; Wang, Zhuo; Wang, Anbang; Xu, Biyu; Jin, Zhiqiang

2016-01-01

The abscisic acid (ABA)-, stress-, and ripening-induced (ASR) protein is a plant-specific hydrophilic transcriptional factor involved in fruit ripening and the abiotic stress response. To date, there have been no studies on the role of ASR genes in delayed flowering time. Here, we found that the ASR from banana, designated as MaASR, was preferentially expressed in the banana female flowers from the eighth, fourth, and first cluster of the inflorescence. MaASR transgenic lines (L14 and L38) had a clear delayed-flowering phenotype. The number of rosette leaves, sepals, and pedicel trichomes in L14 and L38 was greater than in the wild type (WT) under long day (LD) conditions. The period of buds, mid-flowers, and full bloom of L14 and L38 appeared later than the WT. cDNA microarray and quantitative real-time PCR (qRT-PCR) analyses revealed that overexpression of MaASR delays flowering through reduced expression of several genes, including photoperiod pathway genes, vernalization pathway genes, gibberellic acid pathway genes, and floral integrator genes, under short days (SD) for 28 d (from vegetative to reproductive transition stage); however, the expression of the autonomous pathway genes was not affected. This study provides the first evidence of a role for ASR genes in delayed flowering time in plants. PMID:27486844

A Novel Role for Banana MaASR in the Regulation of Flowering Time in Transgenic Arabidopsis.

PubMed

Sun, Peiguang; Miao, Hongxia; Yu, Xiaomeng; Jia, Caihong; Liu, Juhua; Zhang, Jianbin; Wang, Jingyi; Wang, Zhuo; Wang, Anbang; Xu, Biyu; Jin, Zhiqiang

2016-01-01

The abscisic acid (ABA)-, stress-, and ripening-induced (ASR) protein is a plant-specific hydrophilic transcriptional factor involved in fruit ripening and the abiotic stress response. To date, there have been no studies on the role of ASR genes in delayed flowering time. Here, we found that the ASR from banana, designated as MaASR, was preferentially expressed in the banana female flowers from the eighth, fourth, and first cluster of the inflorescence. MaASR transgenic lines (L14 and L38) had a clear delayed-flowering phenotype. The number of rosette leaves, sepals, and pedicel trichomes in L14 and L38 was greater than in the wild type (WT) under long day (LD) conditions. The period of buds, mid-flowers, and full bloom of L14 and L38 appeared later than the WT. cDNA microarray and quantitative real-time PCR (qRT-PCR) analyses revealed that overexpression of MaASR delays flowering through reduced expression of several genes, including photoperiod pathway genes, vernalization pathway genes, gibberellic acid pathway genes, and floral integrator genes, under short days (SD) for 28 d (from vegetative to reproductive transition stage); however, the expression of the autonomous pathway genes was not affected. This study provides the first evidence of a role for ASR genes in delayed flowering time in plants.

Liquid nitrogen cryotherapy for surface eye disease (an AOS thesis).

PubMed

Fraunfelder, Frederick Web

2008-01-01

To evaluate the effects of new treatments with liquid nitrogen cryotherapy on some external eye conditions. In this retrospective case study, 6 separate series from a single tertiary care referral center practice are described. Liquid nitrogen cryotherapy was used to treat conjunctival amyloidosis, primary pterygia, recurrent pterygia, advancing wavelike epitheliopathy (AWLE), superior limbic keratoconjunctivitis (SLK), and palpebral vernal keratoconjunctivitis (VKC). The main outcome measure was the resolution of the disease process after treatment. Four patients with primary localized conjunctival amyloidosis were treated with liquid nitrogen cryotherapy. Two of them had recurrence of the amyloidosis, which cleared with subsequent treatment. Eighteen patients with primary pterygia had excision and cryotherapy with 1 recurrence. Of 6 subjects who presented with recurrent pterygia, 4 had a second recurrence after excision and cryotherapy. In 5 patients with AWLE, the condition resolved within 2 weeks without recurrence or the need for subsequent cryotherapy. Four patients with SLK were treated with liquid nitrogen cryotherapy. Disease recurred in 2 patients and 3 of 7 eyes, although subsequent cryotherapy eradicated SLK in all cases. Two patients and 3 eyelids with palpebral VKC were treated with liquid nitrogen cryotherapy. VKC recurred in all cases. Liquid nitrogen cryotherapy to the surface of the eye is effective in treating AWLE, and SLK. Excision followed by cryotherapy is successful in treating conjunctival amyloidosis and primary pterygia Liquid nitrogen cryotherapy is unsuccessful in the treatment of recurrent pterygia and VKC.

Pore-Scale X-ray Micro-CT Imaging and Analysis of Oil Shales

NASA Astrophysics Data System (ADS)

Saif, T.

2015-12-01

The pore structure and the connectivity of the pore space during the pyrolysis of oil shales are important characteristics which determine hydrocarbon flow behaviour and ultimate recovery. We study the effect of temperature on the evolution of pore space and subsequent permeability on five oil shale samples: (1) Vernal Utah United States, (2) El Lajjun Al Karak Jordan, (3) Gladstone Queensland Australia (4) Fushun China and (5) Kimmerdige United Kingdom. Oil Shale cores of 5mm in diameter were pyrolized at 300, 400 and 500 °C. 3D imaging of 5mm diameter core samples was performed at 1μm voxel resolution using X-ray micro computed tomography (CT) and the evolution of the pore structures were characterized. The experimental results indicate that the thermal decomposition of kerogen at high temperatures is a major factor causing micro-scale changes in the internal structure of oil shales. At the early stage of pyrolysis, micron-scale heterogeneous pores were formed and with a further increase in temperature, the pores expanded and became interconnected by fractures. Permeability for each oil shale sample at each temperature was computed by simulation directly on the image voxels and by pore network extraction and simulation. Future work will investigate different samples and pursue insitu micro-CT imaging of oil shale pyrolysis to characterize the time evolution of the pore space.

Solar activity variations of nocturnal thermospheric meridional winds over Indian longitude sector

NASA Astrophysics Data System (ADS)

Madhav Haridas, M. K.; Manju, G.; Arunamani, T.

2016-09-01

The night time F-layer base height information from ionosondes located at two equatorial stations Trivandrum (TRV 8.5°N, 77°E) and Sriharikota (SHAR 13.7°N, 80.2°E) spanning over two decades are used to derive the climatology of equatorial nocturnal Thermospheric Meridional Winds (TMWs) prevailing during High Solar Activity (HSA) and Low Solar Activity (LSA) epochs. The important inferences from the analysis are 1) Increase in mean equatorward winds observed during LSA compared to HSA during pre midnight hours; 25 m/s for VE (Vernal Equinox) and 20 m/s for SS (Summer Solstice), AE (autumnal Equinox) and WS (Winter Solstice). 2) Mean wind response to Solar Flux Unit (SFU) is established quantitatively for all seasons for pre-midnight hours; rate of increase is 0.25 m/s/SFU for VE, 0.2 m/s/SFU for SS and WS and 0.08 m/s/SFU for AE. 3) Theoretical estimates of winds for the two epochs are performed and indicate the role of ion drag forcing as a major factor influencing TMWs. 4) Observed magnitude of winds and rate of flux dependencies are compared to thermospheric wind models. 5) Equinoctial asymmetry in TMWs is observed for HSA at certain times, with more equatorward winds during AE. These observations lend a potential to parameterize the wind components and effectively model the winds, catering to solar activity variations.

New Tether Ozonesonde System Developed for Uintah Basin Ozone Study in February, 2012

NASA Astrophysics Data System (ADS)

Johnson, B. J.; Cullis, P.; Wendell, J.; Hall, E.; Jordan, A.; Albee, R.; Schnell, R. C.

2012-12-01

NOAA/ESRL/GMD participated in the February, 2012 UINTAH basin air quality campaign to measure ozone concentrations from surface to 300 meters above ground level. The study region, southwest of Vernal, Utah, is an active oil and gas production and exploration area. During the previous winter in 2011, an air quality study led by state and local agencies and Utah State University measured very high ozone at several sites, exceeding 140 ppbv centered near Ouray, Utah under shallow boundary layer with surface snow-cover conditions. The high ozone conditions never developed during the 2012 campaign. The weather remained dry and warm with typical ozone mixing rations ranging from 20 to 60 ppbv. In order to provide near continuous ozone profiles without consuming a balloon and ozonesonde for each sounding, a tether system was developed by the Global Monitoring Division based upon a motorized deep sea fishing rod and reel with 50 pound line. The lightweight system was shown to be rugged and reliable and capable of conducting an ascending and descending profile to 300 m within 90 minutes. Communication software and data loggers continuously monitor the radiosonde pressure to control the ascent/descent rates and altitude. The system can operate unmanned as it will ascend, descend and hold an altitude as controlled from a laptop computer located up to 30 m distant.

Doppler lidar characterization of the boundary layer for aircraft mass-balance estimates of greenhouse gas emissions

NASA Astrophysics Data System (ADS)

Hardesty, R.; Brewer, A.; Banta, R. M.; Senff, C. J.; Sandberg, S. P.; Alvarez, R. J.; Weickmann, A. M.; Sweeney, C.; Karion, A.; Petron, G.; Frost, G. J.; Trainer, M.

2012-12-01

Aircraft-based mass balance approaches are often used to estimate greenhouse gas emissions from distributed sources such as urban areas and oil and gas fields. A scanning Doppler lidar, which measures range-resolved wind and aerosol backscatter information, can provide important information on mixing and transport processes in the planetary boundary layer for these studies. As part of the Uintah Basin Winter Ozone Study, we deployed a high resolution Doppler lidar to characterize winds and turbulence, atmospheric mixing, and mixing layer depth in the oil and gas fields near Vernal, Utah. The lidar observations showed evolution of the horizontal wind field, vertical mixing and aerosol structure for each day during the 5-week deployment. This information was used in conjunction with airborne in situ observations of methane and carbon dioxide to compute methane fluxes and estimate basin-wide methane emissions. A similar experiment incorporating a lidar along with a radar wind profiler and instrumented aircraft was subsequently carried out in the vicinity of the Denver-Julesburg Basin in Colorado. Using examples from these two studies we discuss the use of Doppler lidar in conjunction with other sources of wind information and boundary layer structure for mass-balance type studies. Plans for a one-year deployment of a Doppler lidar as part of the Indianapolis Flux experiment to estimate urban-scale greenhouse gas emissions near are also presented.

Structural basis of DNA target recognition by the B3 domain of Arabidopsis epigenome reader VAL1

PubMed Central

Sasnauskas, Giedrius; Kauneckaitė, Kotryna; Siksnys, Virginijus

2018-01-01

Abstract Arabidopsis thaliana requires a prolonged period of cold exposure during winter to initiate flowering in a process termed vernalization. Exposure to cold induces epigenetic silencing of the FLOWERING LOCUS C (FLC) gene by Polycomb group (PcG) proteins. A key role in this epigenetic switch is played by transcriptional repressors VAL1 and VAL2, which specifically recognize Sph/RY DNA sequences within FLC via B3 DNA binding domains, and mediate recruitment of PcG silencing machinery. To understand the structural mechanism of site-specific DNA recognition by VAL1, we have solved the crystal structure of VAL1 B3 domain (VAL1-B3) bound to a 12 bp oligoduplex containing the canonical Sph/RY DNA sequence 5′-CATGCA-3′/5′-TGCATG-3′. We find that VAL1-B3 makes H-bonds and van der Waals contacts to DNA bases of all six positions of the canonical Sph/RY element. In agreement with the structure, in vitro DNA binding studies show that VAL1-B3 does not tolerate substitutions at any position of the 5′-TGCATG-3′ sequence. The VAL1-B3–DNA structure presented here provides a structural model for understanding the specificity of plant B3 domains interacting with the Sph/RY and other DNA sequences. PMID:29660015

Characterisation of sites of astrobiology interest for Mars landers and sample return missions

NASA Astrophysics Data System (ADS)

Wills, D. E. S.; Monaghan, E. P.; Foing, B. H.

2009-04-01

Introduction: The aim of this work is to nominate and assess candidate landing sites for missions of astrobiological interest to Mars. We report in particular on science and technical criteria and our data analysis for sites suitable for an ExoMars-class mission. This includes information from previous missions (such as Mars Express, MGS, Odyssey, MRO and MER rovers) on mineralogical composition, geomorphology, evidence from past water history from imaging and spectroscopic data, and existence of in-situ prior information from landers and rovers (concerning evidences for volatiles, organics and habitability conditions). Science Goals and Objectives: Firstly, we look for morphological evidence of hydrological activity, including sedimentary deposits (deltas, valley networks), areas of ancient hydrothermal activity (spring deposits). Secondly, we look for mineralogical evidence of hydrological activity, such as phyllosilicates (formed by alteration due to water, indicate prolonged exposure to standing water), hydrated sulphates (formed by alteration due to water, not necessarily standing water), other water-containing minerals. Thirdly, we prioritise Noachian terrain (during this epoch, ~3.5 billion years ago, the Martian climate may have been warmer, and liquid water may have been stable on the surface). Finally, we look for sites where the potential for preservation of biosignatures is high (exposed bedrock, subsurface regions, spring sinters). Engineering Constraints: We consider the engineering constraints placed on the ExoMars misson. These include latitude (sufficient insolation for power), landing altitude (sufficient atmosphere for EDL), horizontal winds, shear, and wind turbulence (airbag free fall), radar altimeter reflectivity (for descent and landing control), obstacles and rock distribution (airbag landing), slopes (airbag landing), rover egress, and rover locomotion. The Priority Sites: Out of a short-list of ten proposed locations, we select two top priority sites and a safe-haven. The sites chosen are Mawrth Vallis (21.6°N, 344.0°E) and Vernal Crater (5.9°N, 355.3°E), and a safe-haven in Eastern Meridiani (0° N, 3.7°E). The entire length of Mawrth Vallis is of interest, not least because the source is unknown. It doesn't begin in chaotic terrain like the majority of outflow channels. Weathered phyllosilicates are prevalent and their variety, concentration and surface area are currently unmatched compared to anywhere on Mars. They exist in layered outcrops. Structures in Vernal Crater are strongly suggestive of spring deposits, which would have a high potential for preservation of biosignatures. Other key features of interest at this site include probable lake-shore and regional fluvial deposits, lacustrine layers and evidence of methane activity. Eastern Meridiani has been nominated as a potential safe-haven. The science interest of this site includes many diverse layers, evidence of phyllosilicates, and excavation of underlying material by cratering. General references: G. Neukum, R. Jaumann et al., HRSC: The High Resolution Stereo Camera of Mars Express, in Mars Express: The scientific payload, edited by A. Wilson, pp. 17-35, ESA, Noordwijk, The Netherlands, 2004; R. Jaumann, G. Neukum, T. Behnke, T.C. Duxburry, K. Eichentopf, S. van Gasselt, B. Giese, K. Gwinner, E. Hauber, H. Hoffmann, A. Hoffmeister, U. Köhler, K.D; Matz, T.B. McCord, V. Mertens, J. Oberst, R. Pischel, D. Reiß, E. Ress, T. Roatsch, P. Saiger, F. Scholten, G. Schwarz, K. Stephan, M. Wählisch, and the HRSC; Co-Investigator Team: The High Resolution Stereo Camera (HRSC) Experiment on Mars Express: Instrument Aspects and Experiment Conduct from Interplanetary; Cruise through Nominal Mission, Planetary and Space Science, 55, 928-952, 2007.

Corneal blindness: a global perspective.

PubMed Central

Whitcher, J. P.; Srinivasan, M.; Upadhyay, M. P.

2001-01-01

Diseases affecting the cornea are a major cause of blindness worldwide, second only to cataract in overall importance. The epidemiology of corneal blindness is complicated and encompasses a wide variety of infectious and inflammatory eye diseses that cause corneal scarring, which ultimately leads to functional blindness. In addition, the prevalence of corneal disease varies from country to country and even from one population to another. While cataract is responsible for nearly 20 million of the 45 million blind people in the world, the next major cause is trachoma which blinds 4.9 million individuals, mainly as a result of corneal scarring and vascularization. Ocular trauma and corneal ulceration are significant causes of corneal blindness that are often underreported but may be responsible for 1.5-2.0 million new cases of monocular blindness every year. Causes of childhood blindness (about 1.5 million worldwide with 5 million visually disabled) include xerophthalmia (350,000 cases annually), ophthalmia neonatorum, and less frequently seen ocular diseases such as herpes simplex virus infections and vernal keratoconjunctivitis. Even though the control of onchocerciasis and leprosy are public health success stories, these diseases are still significant causes of blindness--affecting a quarter of a million individuals each. Traditional eye medicines have also been implicated as a major risk factor in the current epidemic of corneal ulceration in developing countries. Because of the difficulty of treating corneal blindness once it has occurred, public health prevention programmes are the most cost-effective means of decreasing the global burden of corneal blindness. PMID:11285665

Representing winter wheat in the Community Land Model (version 4.5)

DOE Office of Scientific and Technical Information (OSTI.GOV)

Lu, Yaqiong; Williams, Ian N.; Bagley, Justin E.

Winter wheat is a staple crop for global food security, and is the dominant vegetation cover for a significant fraction of Earth's croplands. As such, it plays an important role in carbon cycling and land–atmosphere interactions in these key regions. Accurate simulation of winter wheat growth is not only crucial for future yield prediction under a changing climate, but also for accurately predicting the energy and water cycles for winter wheat dominated regions. We modified the winter wheat model in the Community Land Model (CLM) to better simulate winter wheat leaf area index, latent heat flux, net ecosystem exchange ofmore » CO 2, and grain yield. These included schemes to represent vernalization as well as frost tolerance and damage. We calibrated three key parameters (minimum planting temperature, maximum crop growth days, and initial value of leaf carbon allocation coefficient) and modified the grain carbon allocation algorithm for simulations at the US Southern Great Plains ARM site (US-ARM), and validated the model performance at eight additional sites across North America. We found that the new winter wheat model improved the prediction of monthly variation in leaf area index, reduced latent heat flux, and net ecosystem exchange root mean square error (RMSE) by 41 and 35 % during the spring growing season. The model accurately simulated the interannual variation in yield at the US-ARM site, but underestimated yield at sites and in regions (northwestern and southeastern US) with historically greater yields by 35 %.« less

[Characteristics of allergic conjunctivitis with positive skin prick test].

PubMed

Yang, S; Jiang, Y; Jin, Y M; Zhang, J Y; Li, Y

2017-09-11

Objective: To observe the clinical characteristics of allergic conjunctivitis, and the correlations with skin prick test results. Methods: A retrospective study. Forty patients with positive skin prick test result were included. Patients underwent an ophthalmologic examination to identify their primary presenting signs and symptoms. The allergy types were divided into 5 groups. All dates were analyzed for the dependence, normality and homogeneity of variance. Chi-square test, Mann-Whitney U test, Kruskal-Wallis H test and Spearman correlation analysis were performed accordingly. Results: Among 40 patients, 18(45.0%) had a clinical diagnosis of seasonal allergic conjunctivitis, 14(35.0%) had perennial allergic conjunctivitis, 5(12.5%) had vernal keratoconjunctivitis, and 2(5.0%) had atopic keratoconjunctivits, and 1(2.5%) had giant papillary conjunctivitis. There was no significant difference in the number of symptoms and signs score among different types of allergic conjunctivitis, the score of itching and hyperemia had a positive relationship with the number of positive allergens ( r =0.74, P< 0.05. r =0.96, P< 0.05). The primary symptoms and signs are itching and hyperemia; dust and pollens are the most common allergens. The more positive result of the test of the allergen, the more symptoms and signs encountered in terms of severity. Conclusion: Seasonal allergic conjunctivitis was the most prevalent disorder, the most important clinical characteristics of allergic conjunctivitis are itching and conjunctival congestion, the main allergens are dust and pollens, patients may be sensitive to multiple allergens. (Chin J Ophthalmol, 2017, 53: 689-693) .

Representing winter wheat in the Community Land Model (version 4.5)

NASA Astrophysics Data System (ADS)

Lu, Yaqiong; Williams, Ian N.; Bagley, Justin E.; Torn, Margaret S.; Kueppers, Lara M.

2017-05-01

Winter wheat is a staple crop for global food security, and is the dominant vegetation cover for a significant fraction of Earth's croplands. As such, it plays an important role in carbon cycling and land-atmosphere interactions in these key regions. Accurate simulation of winter wheat growth is not only crucial for future yield prediction under a changing climate, but also for accurately predicting the energy and water cycles for winter wheat dominated regions. We modified the winter wheat model in the Community Land Model (CLM) to better simulate winter wheat leaf area index, latent heat flux, net ecosystem exchange of CO2, and grain yield. These included schemes to represent vernalization as well as frost tolerance and damage. We calibrated three key parameters (minimum planting temperature, maximum crop growth days, and initial value of leaf carbon allocation coefficient) and modified the grain carbon allocation algorithm for simulations at the US Southern Great Plains ARM site (US-ARM), and validated the model performance at eight additional sites across North America. We found that the new winter wheat model improved the prediction of monthly variation in leaf area index, reduced latent heat flux, and net ecosystem exchange root mean square error (RMSE) by 41 and 35 % during the spring growing season. The model accurately simulated the interannual variation in yield at the US-ARM site, but underestimated yield at sites and in regions (northwestern and southeastern US) with historically greater yields by 35 %.

BdBRD1, a brassinosteroid C-6 oxidase homolog in Brachypodium distachyon L., is required for multiple organ development.

PubMed

Xu, Yi; Zhang, Xia; Li, Qi; Cheng, Zhiyuan; Lou, Haijuan; Ge, Lei; An, Hailong

2015-01-01

Brassinosteroids (BRs), known as a kind of phytohormones, play essential roles in plant growth and development. Although the studies on the BR biosynthesis and signaling are extensive in Arabidopsis, little is known in temperate cereals. In this study, bdbrd1-1, a T-DNA insertion mutant from Brachypodium distachyon, was isolated and characterized in details. The bdbrd1-1 mutant showed lots of cellular and morphogenetic defects, including shortened cell shapes, severe dwarfing, twisted leaves and sterile spikes. Sequencing the flanking fragment of the T-DNA and complementation by genomic DNA in the mutant, confirmed that the developmental defects are caused by the T-DNA insertion in BdBRD1, a possible brassinosteroid C-6 oxidase gene. Application of 24-epicastasterone could partly rescue the bdbrd1-1 dwarfing phenotype. Expression analysis of BdBRD1 suggested that bdbrd1-1 is probably a null mutant and its wild type transcript is expressed in various tissues and highest in the leaf sheaths. Meanwhile, measurements on leaf numbers of the main stems or days to the emergence of the inflorescences suggested that bdbrd1-1 is late-flowering. The late-flowering phenotype could be converted by vernalization treatment, although there lacks a typical FLC gene in B. distachyon. The current data provide an insight into the relationship between BRs biosynthesis and individual development in B. distachyon, an emerging model plant for the temperate cereals. Copyright © 2014 Elsevier Masson SAS. All rights reserved.

Bamboo Flowering from the Perspective of Comparative Genomics and Transcriptomics

PubMed Central

Biswas, Prasun; Chakraborty, Sukanya; Dutta, Smritikana; Pal, Amita; Das, Malay

2016-01-01

Bamboos are an important member of the subfamily Bambusoideae, family Poaceae. The plant group exhibits wide variation with respect to the timing (1–120 years) and nature (sporadic vs. gregarious) of flowering among species. Usually flowering in woody bamboos is synchronous across culms growing over a large area, known as gregarious flowering. In many monocarpic bamboos this is followed by mass death and seed setting. While in sporadic flowering an isolated wild clump may flower, set little or no seed and remain alive. Such wide variation in flowering time and extent means that the plant group serves as repositories for genes and expression patterns that are unique to bamboo. Due to the dearth of available genomic and transcriptomic resources, limited studies have been undertaken to identify the potential molecular players in bamboo flowering. The public release of the first bamboo genome sequence Phyllostachys heterocycla, availability of related genomes Brachypodium distachyon and Oryza sativa provide us the opportunity to study this long-standing biological problem in a comparative and functional genomics framework. We identified bamboo genes homologous to those of Oryza and Brachypodium that are involved in established pathways such as vernalization, photoperiod, autonomous, and hormonal regulation of flowering. Additionally, we investigated triggers like stress (drought), physiological maturity and micro RNAs that may play crucial roles in flowering. We also analyzed available transcriptome datasets of different bamboo species to identify genes and their involvement in bamboo flowering. Finally, we summarize potential research hurdles that need to be addressed in future research. PMID:28018419

Representing winter wheat in the Community Land Model (version 4.5)

DOE PAGES

Lu, Yaqiong; Williams, Ian N.; Bagley, Justin E.; ...

2017-05-05

Winter wheat is a staple crop for global food security, and is the dominant vegetation cover for a significant fraction of Earth's croplands. As such, it plays an important role in carbon cycling and land–atmosphere interactions in these key regions. Accurate simulation of winter wheat growth is not only crucial for future yield prediction under a changing climate, but also for accurately predicting the energy and water cycles for winter wheat dominated regions. We modified the winter wheat model in the Community Land Model (CLM) to better simulate winter wheat leaf area index, latent heat flux, net ecosystem exchange ofmore » CO 2, and grain yield. These included schemes to represent vernalization as well as frost tolerance and damage. We calibrated three key parameters (minimum planting temperature, maximum crop growth days, and initial value of leaf carbon allocation coefficient) and modified the grain carbon allocation algorithm for simulations at the US Southern Great Plains ARM site (US-ARM), and validated the model performance at eight additional sites across North America. We found that the new winter wheat model improved the prediction of monthly variation in leaf area index, reduced latent heat flux, and net ecosystem exchange root mean square error (RMSE) by 41 and 35 % during the spring growing season. The model accurately simulated the interannual variation in yield at the US-ARM site, but underestimated yield at sites and in regions (northwestern and southeastern US) with historically greater yields by 35 %.« less

The RNA Polymerase-Associated Factor 1 Complex Is Required for Plant Touch Responses

PubMed Central

Jensen, Gregory S.; Fal, Kateryna; Hamant, Olivier

2017-01-01

Abstract Thigmomorphogenesis is a stereotypical developmental alteration in the plant body plan that can be induced by repeatedly touching plant organs. To unravel how plants sense and record multiple touch stimuli we performed a novel forward genetic screen based on the development of a shorter stem in response to repetitive touch. The touch insensitive (ths1) mutant identified in this screen is defective in some aspects of shoot and root thigmomorphogenesis. The ths1 mutant is an intermediate loss-of-function allele of VERNALIZATION INDEPENDENCE 3 (VIP3), a previously characterized gene whose product is part of the RNA polymerase II-associated factor 1 (Paf1) complex. The Paf1 complex is found in yeast, plants and animals, and has been implicated in histone modification and RNA processing. Several components of the Paf1 complex are required for reduced stem height in response to touch and normal root slanting and coiling responses. Global levels of histone H3K36 trimethylation are reduced in VIP3 mutants. In addition, THS1/VIP3 is required for wild type histone H3K36 trimethylation at the TOUCH3 (TCH3) and TOUCH4 (TCH4) loci and for rapid touch-induced upregulation of TCH3 and TCH4 transcripts. Thus, an evolutionarily conserved chromatin-modifying complex is required for both short- and long-term responses to mechanical stimulation, providing insight into how plants record mechanical signals for thigmomorphogenesis. PMID:28204553

Divergent responses to spring and winter warming drive community level flowering trends

PubMed Central

Cook, Benjamin I.; Wolkovich, Elizabeth M.; Parmesan, Camille

2012-01-01

Analyses of datasets throughout the temperate midlatitude regions show a widespread tendency for species to advance their springtime phenology, consistent with warming trends over the past 20–50 y. Within these general trends toward earlier spring, however, are species that either have insignificant trends or have delayed their timing. Various explanations have been offered to explain this apparent nonresponsiveness to warming, including the influence of other abiotic cues (e.g., photoperiod) or reductions in fall/winter chilling (vernalization). Few studies, however, have explicitly attributed the historical trends of nonresponding species to any specific factor. Here, we analyzed long-term data on phenology and seasonal temperatures from 490 species on two continents and demonstrate that (i) apparent nonresponders are indeed responding to warming, but their responses to fall/winter and spring warming are opposite in sign and of similar magnitude; (ii) observed trends in first flowering date depend strongly on the magnitude of a given species’ response to fall/winter vs. spring warming; and (iii) inclusion of fall/winter temperature cues strongly improves hindcast model predictions of long-term flowering trends compared with models with spring warming only. With a few notable exceptions, climate change research has focused on the overall mean trend toward phenological advance, minimizing discussion of apparently nonresponding species. Our results illuminate an understudied source of complexity in wild species responses and support the need for models incorporating diverse environmental cues to improve predictability of community level responses to anthropogenic climate change. PMID:22615406

An Arabidopsis mutation in translation elongation factor 2 causes superinduction of CBF/DREB1 transcription factor genes but blocks the induction of their downstream targets under low temperatures

PubMed Central

Guo, Yan; Xiong, Liming; Ishitani, Manabu; Zhu, Jian-Kang

2002-01-01

Low temperature regulates gene expression in bacteria, yeast, and animals as well as in plants. However, the signal transduction cascades mediating the low temperature responses are not well understood in any organism. To identify components in low temperature signaling genetically, we isolated Arabidopsis thaliana mutants in which cold-responsive genes are no longer induced by low temperatures. One of these mutations, los1–1, specifically blocks low temperature-induced transcription of cold-responsive genes. Surprisingly, cold-induced expression of the early response transcriptional activators, C-repeat/dehydration responsive element binding factors (CBF/DREB1s), is enhanced by the los1–1 mutation. The los1–1 mutation also reduces the capacity of plants to develop freezing tolerance but does not impair the vernalization response. Genetic analysis indicated that los1–1 is a recessive mutation in a single nuclear gene. The LOS1 gene encodes a translation elongation factor 2-like protein. Protein labeling studies show that new protein synthesis is blocked in los1–1 mutant plants specifically in the cold. These results reveal a critical role of new protein synthesis in the proper transduction of low temperature signals. Our results also suggest that cold-induced transcription of CBF/DREB1s is feedback inhibited by their gene products or by products of their downstream target genes. PMID:12032361

Pollinator-mediated competition between two congeners, Limnanthes douglasii subsp. rosea and L. alba (Limnanthaceae).

PubMed

Briscoe Runquist, Ryan D

2012-07-01

Pollinator visits are essential for reproduction in many plants, yet interspecific movements of pollinators can also lead to competitive interactions between coflowering species. Pollination-mediated reductions in fertility could potentially lead to exclusion of competing plant species, and may generate spatial variation in the associations among coflowering species across a landscape. I documented the potential for heterospecific pollen transfer to cause competitive interactions between two annual grassland species native to California, Limnanthes douglasii subsp. rosea and L. alba, two reproductively incompatible species that have broadly overlapping geographic ranges in the foothills of the Sierra Nevada. I observed pollinator movement in constructed arrays and controlled crosses in the greenhouse and field to investigate the consequences of heterospecific pollen transfer. Pollinators move readily between species when they are presented together in experimental arrays. In the greenhouse, deposition of heterospecific pollen decreased fertility in both species. The decrease in seeds produced per flower was much more pronounced in L. d. rosea (90.6% reduction) than in L. alba (40.8% reduction). In field experiments, L. d. rosea plants that received pollen from heterospecific neighbors first showed >50% reduction in per-flower fertility. Under natural pollination conditions, heterospecific pollen transfer has the ability to decrease the fertility of L. d. rosea when it occurs at low frequency in mixed stands. Accordingly, pollinator-mediated competition may contribute to the locally disjunct distributions of these two species. It may also influence important restoration decisions in vernal pool habitats.

Liquid Nitrogen Cryotherapy for Surface Eye Disease (An AOS Thesis)

PubMed Central

Fraunfelder, Frederick Web

2008-01-01

Purpose To evaluate the effects of new treatments with liquid nitrogen cryotherapy on some external eye conditions. Methods In this retrospective case study, 6 separate series from a single tertiary care referral center practice are described. Liquid nitrogen cryotherapy was used to treat conjunctival amyloidosis, primary pterygia, recurrent pterygia, advancing wavelike epitheliopathy (AWLE), superior limbic keratoconjunctivitis (SLK), and palpebral vernal keratoconjunctivitis (VKC). The main outcome measure was the resolution of the disease process after treatment. Results Four patients with primary localized conjunctival amyloidosis were treated with liquid nitrogen cryotherapy. Two of them had recurrence of the amyloidosis, which cleared with subsequent treatment. Eighteen patients with primary pterygia had excision and cryotherapy with 1 recurrence. Of 6 subjects who presented with recurrent pterygia, 4 had a second recurrence after excision and cryotherapy. In 5 patients with AWLE, the condition resolved within 2 weeks without recurrence or the need for subsequent cryotherapy. Four patients with SLK were treated with liquid nitrogen cryotherapy. Disease recurred in 2 patients and 3 of 7 eyes, although subsequent cryotherapy eradicated SLK in all cases. Two patients and 3 eyelids with palpebral VKC were treated with liquid nitrogen cryotherapy. VKC recurred in all cases. Conclusions Liquid nitrogen cryotherapy to the surface of the eye is effective in treating AWLE, and SLK. Excision followed by cryotherapy is successful in treating conjunctival amyloidosis and primary pterygia Liquid nitrogen cryotherapy is unsuccessful in the treatment of recurrent pterygia and VKC. PMID:19277243

Using Bayesian Population Viability Analysis to Define Relevant Conservation Objectives.

PubMed

Green, Adam W; Bailey, Larissa L

2015-01-01

Adaptive management provides a useful framework for managing natural resources in the face of uncertainty. An important component of adaptive management is identifying clear, measurable conservation objectives that reflect the desired outcomes of stakeholders. A common objective is to have a sustainable population, or metapopulation, but it can be difficult to quantify a threshold above which such a population is likely to persist. We performed a Bayesian metapopulation viability analysis (BMPVA) using a dynamic occupancy model to quantify the characteristics of two wood frog (Lithobates sylvatica) metapopulations resulting in sustainable populations, and we demonstrate how the results could be used to define meaningful objectives that serve as the basis of adaptive management. We explored scenarios involving metapopulations with different numbers of patches (pools) using estimates of breeding occurrence and successful metamorphosis from two study areas to estimate the probability of quasi-extinction and calculate the proportion of vernal pools producing metamorphs. Our results suggest that ≥50 pools are required to ensure long-term persistence with approximately 16% of pools producing metamorphs in stable metapopulations. We demonstrate one way to incorporate the BMPVA results into a utility function that balances the trade-offs between ecological and financial objectives, which can be used in an adaptive management framework to make optimal, transparent decisions. Our approach provides a framework for using a standard method (i.e., PVA) and available information to inform a formal decision process to determine optimal and timely management policies.

Adaptation to seasonality and the winter freeze

PubMed Central

Preston, Jill C.; Sandve, Simen R.

2013-01-01

Flowering plants initially diversified during the Mesozoic era at least 140 million years ago in regions of the world where temperate seasonal environments were not encountered. Since then several cooling events resulted in the contraction of warm and wet environments and the establishment of novel temperate zones in both hemispheres. In response, less than half of modern angiosperm families have members that evolved specific adaptations to cold seasonal climates, including cold acclimation, freezing tolerance, endodormancy, and vernalization responsiveness. Despite compelling evidence for multiple independent origins, the level of genetic constraint on the evolution of adaptations to seasonal cold is not well understood. However, the recent increase in molecular genetic studies examining the response of model and crop species to seasonal cold offers new insight into the evolutionary lability of these traits. This insight has major implications for our understanding of complex trait evolution, and the potential role of local adaptation in response to past and future climate change. In this review, we discuss the biochemical, morphological, and developmental basis of adaptations to seasonal cold, and synthesize recent literature on the genetic basis of these traits in a phylogenomic context. We find evidence for multiple genetic links between distinct physiological responses to cold, possibly reinforcing the coordinated expression of these traits. Furthermore, repeated recruitment of the same or similar ancestral pathways suggests that land plants might be somewhat pre-adapted to dealing with temperature stress, perhaps making inducible cold traits relatively easy to evolve. PMID:23761798

Solar Orientation of Irish Early Christian Oratories

NASA Astrophysics Data System (ADS)

Tiede, V. R.

2001-12-01

The Hiberno-Latin literary metaphor of "Xpistus sol verus" (Christ the True Sun) finds an architectural analogue in the orientation of the single eastern window of Irish monastic stone chapels or oratories. The author's field surveys in Ireland, Hebrides, Orkney and Shetlands revealed that the window of Irish rectangular dry stone oratories framed the rising solar disk on the Feast Days of selected saints of the Celtic Early Christian Church, AD 800-1100. The most frequent target skyline declinations were to sunrise on the Feast Days of St. Patrick (March 17th) and St. Aidan of Lindisfarne (August 31st). During the Early Christian period, St. Patrick's Day coincided with the Vernal Equinox, and heralded the Paschal Full Moon (i.e., Passover crucifixion) and Easter Sunday as proclaimed by Emperor Constantine at the Council of Nicaea (AD 325). St. Aidan of Lindisfarne (d. AD 651) inspired the Irish monks who, at the Synod of Whitby (AD 664), remained loyal to the Jewish 84-year cycle determining Passover and refused to replace it with the new orthodox 19-year computus for Easter adopted by the Roman Catholic Church (AD 527). Hypothetical affiliation between monastic communities whose oratories share common solar orientation, interior length/width ratios (e.g., 4:3 and 3:2) and units of measurement (e.g., Scottish ell, Coptic cubit, or Roman pes) is discussed. Grateful acknowledgement is made to the Michael D. Coe Fund and Augusta Hazard Fund of Yale University for research grant support in 1999.

Projecting the impact of climate change on phenology of winter wheat in northern Lithuania

NASA Astrophysics Data System (ADS)

Juknys, Romualdas; Velička, Rimantas; Kanapickas, Arvydas; Kriaučiūnienė, Zita; Masilionytė, Laura; Vagusevičienė, Ilona; Pupalienė, Rita; Klepeckas, Martynas; Sujetovienė, Gintarė

2017-10-01

Climate warming and a shift in the timing of phenological phases, which lead to changes in the duration of the vegetation period may have an essential impact on the productivity of winter crops. The main purpose of this study is to examine climate change-related long-term (1961-2015) changes in the duration of both initial (pre-winter) and main (post-winter) winter wheat vegetation seasons and to present the projection of future phenological changes until the end of this century. Delay and shortening of pre-winter vegetation period, as well as the advancement and slight extension of the post-winter vegetation period, resulted in the reduction of whole winter wheat vegetation period by more than 1 week over the investigated 55 years. Projected changes in the timing of phenological phases which define limits of a main vegetation period differ essentially from the observed period. According to pessimistic (Representative Concentration Pathways 8.5) scenario, the advancement of winter wheat maturity phase by almost 30 days and the shortening of post-winter vegetation season by 15 days are foreseen for a far (2071-2100) projection. An increase in the available chilling amount is specific not only to the investigated historical period (1960-2015) but also to the projected period according to the climate change scenarios of climate warming for all three projection periods. Consequently, the projected climate warming does not pose a threat of plant vernalization shortage in the investigated geographical latitudes.

Multiply to conquer: Copy number variations at Ppd-B1 and Vrn-A1 facilitate global adaptation in wheat.

PubMed

Würschum, Tobias; Boeven, Philipp H G; Langer, Simon M; Longin, C Friedrich H; Leiser, Willmar L

2015-07-29

Copy number variation was found to be a frequent type of DNA polymorphism in the human genome often associated with diseases but its importance in crops and the effects on agronomic traits are still largely unknown. Here, we employed a large worldwide panel of 1110 winter wheat varieties to assess the frequency and the geographic distribution of copy number variants at the Photoperiod-B1 (Ppd-B1) and the Vernalization-A1 (Vrn-A1) loci as well as their effects on flowering time under field conditions. We identified a novel four copy variant of Vrn-A1 and based on the phylogenetic relationships among the lines show that the higher copy variants at both loci are likely to have arisen independently multiple times. In addition, we found that the frequency of the different copy number variants at both loci reflects the environmental conditions in the varieties' region of origin and based on multi-location field trials show that Ppd-B1 copy number has a substantial effect on the fine-tuning of flowering time. In conclusion, our results show the importance of copy number variation at Ppd-B1 and Vrn-A1 for the global adaptation of wheat making it a key factor for wheat success in a broad range of environments and in a wider context substantiate the significant role of copy number variation in crops.

Vernal distribution and turnover of dimethylsulfide (DMS) in the surface water of the Yellow Sea

NASA Astrophysics Data System (ADS)

Li, Cheng-Xuan; Yang, Gui-Peng; Wang, Bao-Dong; Xu, Zong-Jun

2016-10-01

The spatial and interannual variations of dimethylsulfide (DMS) and its precursors, dissolved and particulate dimethylsulfoniopropionate (DMSP), were discussed on the basis of field observations in the surface waters of the Yellow Sea during spring 2007. Maxima of dimethylated sulfur compounds and low chlorophyll a concentrations were found in the central southern Yellow Sea, whereas low concentrations of DMS and DMSP were detected at the boundary between the northern and southern parts of the Yellow Sea. This frontal region is influenced by active water currents, air-sea interface exchanges, and biological turnover. The horizontal variations in DMS production and consumption rates showed a decreasing tendency from the coastal to offshore areas mainly due to the complicated biological features. DMS positively correlated with dissolved CH4 and CO2 but negatively correlated with nutrients (nitrite and phosphate). Particulate DMSP concentrations and DMS production rates positively correlated with dinoflagellate abundances but negatively correlated with diatom cell densities. DMS and DMSP concentrations, as well as DMS production and consumption rates, exhibited approximately 2.0-2.8 fold increases from 2005 to 2012. This finding was likely caused by shifts in the phytoplankton communities from diatoms to dinoflagellates and the increases in abundances of zooplankton and bacteria. Average sea-to-air DMS fluxes were estimated to be 8.12 ± 1.24 µmol·(m-2·d-1), and DMS microbial consumption was approximately 1.68 times faster than the DMS sea-air exchange. These findings imply that biological consumption, relative to ventilation, is a predominant mechanism in DMS removal from the surface water.

Usefulness of a new therapy using rebamipide eyedrops in patients with VKC/AKC refractory to conventional anti-allergic treatments.

PubMed

Ueta, Mayumi; Sotozono, Chie; Koga, Ayaka; Yokoi, Norihiko; Kinoshita, Shigeru

2014-03-01

Rebamipide, a gastroprotective drug, has been reported to suppress gastric mucosal inflammation. In Japan, rebamipide eyedrops have recently been approved for the treatment of dry eye disease. Some patients with allergic conjunctival diseases such as vernal keratoconjunctivitis (VKC) or atopic keratoconjunctivitis (AKC) manifest dry eye with decreased tear break-up time only. We report patients with VKC/AKC refractory to anti-allergic treatments who responded to the combination of rebamipide eyedrops and conventional anti-allergic treatments with anti-allergic- and/or immunosuppressive/steroid eyedrops. Four patients with allergic conjunctival diseases with giant papillae (VKC or AKC) instilled rebamipide eyedrops three or four times a day for varying periods. All had dry eye with decreased tear break-up time. We evaluated changes in the size of their giant papillae using Image J software. We observed attenuation of the giant papillae in all 4 patients. In 2 patients with severe disease, whose giant papillae had become larger despite the administration of tacrolimus and steroids, the addition of rebamipide contributed to their attenuation. In 2 patients with mild disease, the giant papillae had become larger or remained the same size despite the administration of anti-allergy drugs; the addition of rebamipide eyedrops also resulted in the attenuation of their giant papillae. Our findings suggest that rebamipide eyedrops might attenuate giant papillae in patients with allergic conjunctival diseases and that these eyedrops may be useful for the treatment of not only dry eye but also of allergic conjunctival diseases.

RECONNAISSANCE FOR URANIUM IN ASPHALT-BEARING ROCKS IN THE WESTERN UNITED STATES

DOE Office of Scientific and Technical Information (OSTI.GOV)

Hail, W.J. Jr.

1957-01-01

An appraisal of asphait-bearing rocks as potential sources of uranium was made during 1953 and 1954 in 45 areas in Calif., Utah, Wyo., Mont., N. Mex., Tex., Okla., and Mo. A total of 202 samples from these areas was analyzed for uranium. The oldest rocks sampled are Ordovician in age, and the youngest are Recent. Although none of the deposits are of value at this time as a source of U, some of the deposits may constitute a low-grade U resource, but recovery of the U will depend upon the primary use of the asphalt. Significant amounts of U lnmore » the ash of oil extracted from these rocks were found in samples from 7 of the 45 areas examined. These areas are Chalome Creek, McKittrick, Edna, and Los Alamos Calif.; Vernal, Utah; Sulphur, Okla.; and Ellis, Mo. The average U content in the ash of the extracted oil of samples from these 7 areas ranges from 0.028 to 0.376%. All except the Chalone Creek area contain large estimated reserves of asphalt-bearing rock, ranging from 15 million to almost 2 billion tons. The average U content of samples from 13 additiomal areas ranges from 0.020 to 0.06B% in the ash of the extracted oil. Many of these areas contain very large reserves of asphalt-bearing rocks. It is believed that most of the asphalt deposits are oil residues, and that the U was introduced during or after the late stages of oil movement and loss of the lighter oil fractions. (auth)« less

Twenty-first century mast cell stabilizers

PubMed Central

Finn, D F; Walsh, J J

2013-01-01

Mast cell stabilizing drugs inhibit the release of allergic mediators from mast cells and are used clinically to prevent allergic reactions to common allergens. Despite the relative success of the most commonly prescribed mast cell stabilizer, disodium cromoglycate, in use for the preventative treatment of bronchial asthma, allergic conjunctivitis and vernal keratoconjunctivitis, there still remains an urgent need to design new substances that are less expensive and require less frequent dosing schedules. In this regard, recent developments towards the discovery of the next generation of mast cell stabilizing drugs has included studies on substances isolated from natural sources, biological, newly synthesized compounds and drugs licensed for other indications. The diversity of natural products evaluated range from simple phenols, alkaloids, terpenes to simple amino acids. While in some cases their precise mode of action remains unknown it has nevertheless sparked interest in the development of synthetic derivatives with improved pharmacological properties. Within the purely synthetic class of inhibitors, particular attention has been devoted to the inhibition of important signalling molecules including spleen TK and JAK3. The statin class of cholesterol-lowering drugs as well as nilotinib, a TK inhibitor, are just some examples of clinically used drugs that have been evaluated for their anti-allergic properties. Here, we examine each approach under investigation, summarize the test data generated and offer suggestions for further preclinical evaluation before their therapeutic potential can be realized. Linked Articles This article is part of a themed issue on Histamine Pharmacology Update. To view the other articles in this issue visit http://dx.doi.org/10.1111/bph.2013.170.issue-1 PMID:23441583

Advanced seasonal reproductive development in a male urban bird is reflected in earlier plasma luteinizing hormone rise but not energetic status.

PubMed

Davies, Scott; Behbahaninia, Hirbod; Giraudeau, Mathieu; Meddle, Simone L; Waites, Kyle; Deviche, Pierre

2015-12-01

Urban animals inhabit an environment considerably different than do their non-urban conspecifics, and to persist urban animals must adjust to these novel environments. The timing of seasonal reproductive development (i.e., growth of gonads and secondary sex organs) is a fundamental determinant of the breeding period and is frequently advanced in urban bird populations. However, the underlying mechanism(s) by which birds adjust the timing of reproductive development to urban areas remain(s) largely unknown. Here, we compared the timing of vernal reproductive development in free-ranging urban and non-urban male Abert's Towhees, Melozone aberti, in Phoenix, Arizona, USA, and tested the non-mutually exclusive hypotheses that earlier reproductive development is due to improved energetic status and/or earlier increase in endocrine activity of the reproductive system. We found that urban birds initiated testicular development earlier than non-urban birds, but this disparity was not associated with differences in body condition, fat stores, or innate immune performance. These results provide no support for the hypothesis that energetic constraints are responsible for delayed reproductive development of non-urban relative to urban male Abert's Towhees. Urban birds did, however, increase their plasma luteinizing hormone, but not plasma testosterone, earlier than non-urban birds. These findings suggest that adjustment to urban areas by Abert's Towhees involves increases in the endocrine activity of the anterior pituitary gland and/or hypothalamus earlier than non-urban towhees. Copyright © 2015 The Authors. Published by Elsevier Inc. All rights reserved.

The roles of genetic drift and natural selection in quantitative trait divergence along an altitudinal gradient in Arabidopsis thaliana

PubMed Central

Luo, Y; Widmer, A; Karrenberg, S

2015-01-01

Understanding how natural selection and genetic drift shape biological variation is a central topic in biology, yet our understanding of the agents of natural selection and their target traits is limited. We investigated to what extent selection along an altitudinal gradient or genetic drift contributed to variation in ecologically relevant traits in Arabidopsis thaliana. We collected seeds from 8 to 14 individuals from each of 14 A. thaliana populations originating from sites between 800 and 2700 m above sea level in the Swiss Alps. Seed families were grown with and without vernalization, corresponding to winter-annual and summer-annual life histories, respectively. We analyzed putatively neutral genetic divergence between these populations using 24 simple sequence repeat markers. We measured seven traits related to growth, phenology and leaf morphology that are rarely reported in A. thaliana and performed analyses of altitudinal clines, as well as overall QST-FST comparisons and correlation analyses among pair-wise QST, FST and altitude of origin differences. Multivariate analyses suggested adaptive differentiation along altitude in the entire suite of traits, particularly when expressed in the summer-annual life history. Of the individual traits, a decrease in rosette leaf number in the vegetative state and an increase in leaf succulence with increasing altitude could be attributed to adaptive divergence. Interestingly, these patterns relate well to common within- and between-species trends of smaller plant size and thicker leaves at high altitude. Our results thus offer exciting possibilities to unravel the underlying mechanisms for these conspicuous trends using the model species A. thaliana. PMID:25293874

Predictions of heading date in bread wheat (Triticum aestivum L.) using QTL-based parameters of an ecophysiological model

PubMed Central

Bogard, Matthieu; Ravel, Catherine; Paux, Etienne; Bordes, Jacques; Balfourier, François; Chapman, Scott C.; Le Gouis, Jacques; Allard, Vincent

2014-01-01

Prediction of wheat phenology facilitates the selection of cultivars with specific adaptations to a particular environment. However, while QTL analysis for heading date can identify major genes controlling phenology, the results are limited to the environments and genotypes tested. Moreover, while ecophysiological models allow accurate predictions in new environments, they may require substantial phenotypic data to parameterize each genotype. Also, the model parameters are rarely related to all underlying genes, and all the possible allelic combinations that could be obtained by breeding cannot be tested with models. In this study, a QTL-based model is proposed to predict heading date in bread wheat (Triticum aestivum L.). Two parameters of an ecophysiological model (V sat and P base, representing genotype vernalization requirements and photoperiod sensitivity, respectively) were optimized for 210 genotypes grown in 10 contrasting location × sowing date combinations. Multiple linear regression models predicting V sat and P base with 11 and 12 associated genetic markers accounted for 71 and 68% of the variance of these parameters, respectively. QTL-based V sat and P base estimates were able to predict heading date of an independent validation data set (88 genotypes in six location × sowing date combinations) with a root mean square error of prediction of 5 to 8.6 days, explaining 48 to 63% of the variation for heading date. The QTL-based model proposed in this study may be used for agronomic purposes and to assist breeders in suggesting locally adapted ideotypes for wheat phenology. PMID:25148833

Same concept…Different terms

NASA Astrophysics Data System (ADS)

Heafner, Joe

2018-03-01

Most introductory physics courses begin with the concept of an object (usually a particle) having a precise position or location in space (I will not address spacetime here) relative to something else, the origin of a three-dimensional coordinate system perhaps. My experience has been that physics students are inherently at home with this concept. In astronomy, we often begin by thinking about the sky. For the purposes of this article, I will simply define it as that which we see when we look away from Earth's surface. It appears almost as a two-dimensional plane, perhaps even a curved surface. When we look at something in the sky, we really have no sense of distance. Indeed, when astronomers need the "position" of a star or planet in the sky, the quantity is two dimensional. Because the sky appears to wrap around Earth, celestial positions can be given entirely by angular quantities. Astronomers use right ascension and declination, respectively, as analogs of terrestrial longitude and latitude. Right ascension is the angular distance eastward around the celestial equator (the projection of Earth's equator onto the celestial sphere) from the vernal equinox (where the celestial equator and the ecliptic intersect such that the Sun is moving from the Southern Hemisphere to the Northern Hemisphere) to the object and declination is the object's angular distance north or south of the celestial equator. So to an astronomer, for the purposes of aiming a telescope, position refers to a two-dimensional quantity because in the sky there is no direct sense of depth or distance.

Identification of High-Temperature-Responsive Genes in Cereals1[C][W

PubMed Central

Hemming, Megan N.; Walford, Sally A.; Fieg, Sarah; Dennis, Elizabeth S.; Trevaskis, Ben

2012-01-01

High temperature influences plant development and can reduce crop yields. We examined how ambient temperature influences reproductive development in the temperate cereals wheat (Triticum aestivum) and barley (Hordeum vulgare). High temperature resulted in rapid progression through reproductive development in long days, but inhibited early stages of reproductive development in short days. Activation of the long-day flowering response pathway through day-length-insensitive alleles of the PHOTOPERIOD1 gene, which result in high FLOWERING LOCUS T-like1 transcript levels, did not allow rapid early reproductive development at high temperature in short days. Furthermore, high temperature did not increase transcript levels of FLOWERING LOCUS T-like genes. These data suggest that genes or pathways other than the long-day response pathway mediate developmental responses to high temperature in cereals. Transcriptome analyses suggested a possible role for vernalization-responsive genes in the developmental response to high temperature. The MADS-box floral repressor HvODDSOC2 is expressed at elevated levels at high temperature in short days, and might contribute to the inhibition of early reproductive development under these conditions. FLOWERING PROMOTING FACTOR1-like, RNase-S-like genes, and VER2-like genes were also identified as candidates for high-temperature-responsive developmental regulators. Overall, these data suggest that rising temperatures might elicit different developmental responses in cereal crops at different latitudes or times of year, due to the interaction between temperature and day length. Additionally, we suggest that different developmental regulators might mediate the response to high temperature in cereals compared to Arabidopsis (Arabidopsis thaliana). PMID:22279145

Phosphorylation of SPT5 by CDKD;2 Is Required for VIP5 Recruitment and Normal Flowering in Arabidopsis thaliana[OPEN

PubMed Central

Lu, Chengyuan; Tian, Yongke; Wang, Shiliang; Su, Yanhua; Mao, Ting; Chen, Qingqing; Xu, Zuntao

2017-01-01

The elongation factor suppressor of Ty 5 homolog (Spt5) is a regulator of transcription and histone methylation. In humans, phosphorylation of SPT5 by P-TEFb, a protein kinase composed of Cyclin-dependent kinase 9 (CDK9) and cyclin T, interacts with the RNA polymerase II-associated factor1 (PAF1) complex. However, the mechanism of SPT5 phosphorylation is not well understood in plants. Here, we examine the function of SPT5 in Arabidopsis thaliana and find that spt5 mutant flowers early under long-day and short-day conditions. SPT5 interacts with the CDK-activating kinase 4 (CAK4; CDKD;2) and is specifically phosphorylated by CDKD;2 at threonines. The phosphorylated SPT5 binds VERNALIZATION INDEPENDENCE5 (VIP5), a subunit of the PAF1 complex. Genetic analysis showed that VIP5 acts downstream of SPT5 and CDKD;2. Loss of SPT5 or CDKD;2 function results in early flowering because of decreased amounts of FLOWERING LOCUS C (FLC) transcript. Importantly, CDKD;2 and SPT5 are required for the deposition of VIP5 and the enhancement of trimethylation of histone 3 lysine 4 in the chromatin of the FLC locus. Together, our results provide insight into the mechanism by which the Arabidopsis elongation factor SPT5 recruits the PAF1 complex via the posttranslational modification of proteins and suggest that the phosphorylation of SPT5 by CDKD;2 enables it to recruit VIP5 to regulate chromatin and transcription in Arabidopsis. PMID:28188267

Solar activity variations of equatorial spread F occurrence and sustenance during different seasons over Indian longitudes: Empirical model and causative mechanisms

NASA Astrophysics Data System (ADS)

Madhav Haridas, M. K.; Manju, G.; Arunamani, T.

2018-05-01

A comprehensive analysis using nearly two decades of ionosonde data is carried out on the seasonal and solar cycle variations of Equatorial Spread F (ESF) irregularities over magnetic equatorial location Trivandrum (8.5°N, 77°E). The corresponding Rayleigh Taylor (RT) instability growth rates (γ) are also estimated. A seasonal pattern of ESF occurrence and the corresponding γ is established for low solar (LSA), medium solar (MSA) and high solar (HSA) activity periods. For LSA, it is seen that the γ maximizes during post sunset time with comparable magnitudes for autumnal equinox (AE), vernal equinox (VE) and winter solstice (WS), while for summer solstice (SS) it maximizes in the post-midnight period. Concurrent responses are seen in the ESF occurrence pattern. For MSA, γ maximizes during post-sunset for VE followed by WS and AE while SS maximises during post-midnight period. The ESF occurrence for MSA is highest for VE (80%), followed by AE (70%), WS (60%) and SS (50%). In case of HSA, maximum γ occurs for VE followed by AE, WS and SS. The concurrent ESF occurrence maximizes for VE and AE (90%), WS and SS at 70%. The solar cycle variation of γ is examined. γ shows a linear variation with F10.7 cm flux. Further, ESF percentage occurrence and duration show an exponential and linear variation respectively with γ. An empirical model on the solar activity dependence of ESF occurrence and sustenance time over Indian longitudes is arrived at using the database spanning two solar cycles for the first time.

Calendar motifs on Getashen hydria

NASA Astrophysics Data System (ADS)

Vrtanesyan, Garegin

2015-07-01

Getashen hydria was found in the tombs of the middle bronze age (the first third of the second Millennium B.C.) in Armenia (Lake Sevan). It shows a scene consisting of three friezes. On the lower frieze depicts six zoomorphic figures, on an average six frieze waterfowl, and on top, is the graphic signs. Calendar motives of this composition have a numeric expression, six zoomorphic figures on the lower and middle friezes. Division of the annual cycle into two parts is known in the calendars of the ancient Indo-Iranian ("great summer" and "the great winter"). Animals on the lower frieze of the second mark, "winter" road of the Sun, because in this period are the most important events, ensuring the reproduction of the economy of the society. This rut ungulates - wild (deer) and domestic (goats). Moreover, the gon goats end in December, almost coinciding with the onset of the winter solstice. A couple of dogs on the lower frieze marks the version of the myth, imprisoned in the rock hero - the Sun (Mihr - Artavazd), to which his dogs have to chew the chains, anticipating his exit at the winter solstice. This is indicated by the direction of their movement, the Sun moves from left to right for an observer, only when located on the South side of the sky (i.e., beginning with the autumnal equinox). The most important event of the period of "summer road" of the Sun is the vernal equinox, which coincide with the arrival of waterfowl (ducks, geese). Their direction on the second frieze (left to right) corresponds to the position of the observer, facing North.

Sublimation of icy aggregates in the coma of comet 67P/Churyumov-Gerasimenko detected with the OSIRIS cameras on board Rosetta

NASA Astrophysics Data System (ADS)

Gicquel, A.; Vincent, J.-B.; Agarwal, J.; A'Hearn, M. F.; Bertini, I.; Bodewits, D.; Sierks, H.; Lin, Z.-Y.; Barbieri, C.; Lamy, P. L.; Rodrigo, R.; Koschny, D.; Rickman, H.; Keller, H. U.; Barucci, M. A.; Bertaux, J.-L.; Besse, S.; Cremonese, G.; Da Deppo, V.; Davidsson, B.; Debei, S.; Deller, J.; De Cecco, M.; Frattin, E.; El-Maarry, M. R.; Fornasier, S.; Fulle, M.; Groussin, O.; Gutiérrez, P. J.; Gutiérrez-Marquez, P.; Güttler, C.; Höfner, S.; Hofmann, M.; Hu, X.; Hviid, S. F.; Ip, W.-H.; Jorda, L.; Knollenberg, J.; Kovacs, G.; Kramm, J.-R.; Kührt, E.; Küppers, M.; Lara, L. M.; Lazzarin, M.; Moreno, J. J. Lopez; Lowry, S.; Marzari, F.; Masoumzadeh, N.; Massironi, M.; Moreno, F.; Mottola, S.; Naletto, G.; Oklay, N.; Pajola, M.; Pommerol, A.; Preusker, F.; Scholten, F.; Shi, X.; Thomas, N.; Toth, I.; Tubiana, C.

2016-11-01

Beginning in 2014 March, the OSIRIS (Optical, Spectroscopic, and Infrared Remote Imaging System) cameras began capturing images of the nucleus and coma (gas and dust) of comet 67P/Churyumov-Gerasimenko using both the wide angle camera (WAC) and the narrow angle camera (NAC). The many observations taken since July of 2014 have been used to study the morphology, location, and temporal variation of the comet's dust jets. We analysed the dust monitoring observations shortly after the southern vernal equinox on 2015 May 30 and 31 with the WAC at the heliocentric distance Rh = 1.53 AU, where it is possible to observe that the jet rotates with the nucleus. We found that the decline of brightness as a function of the distance of the jet is much steeper than the background coma, which is a first indication of sublimation. We adapted a model of sublimation of icy aggregates and studied the effect as a function of the physical properties of the aggregates (composition and size). The major finding of this paper was that through the sublimation of the aggregates of dirty grains (radius a between 5 and 50 μm) we were able to completely reproduce the radial brightness profile of a jet beyond 4 km from the nucleus. To reproduce the data, we needed to inject a number of aggregates between 8.5 × 1013 and 8.5 × 1010 for a = 5 and 50 μm, respectively, or an initial mass of H2O ice around 22 kg.

Candidate Landing Site for the Mars Science Laboratory: Vernal Crater, S.W. ARabia Terra

NASA Technical Reports Server (NTRS)

Paris, K. N.; Allen, C. C.; Oehler, D. Z.

2007-01-01

In the fall of 2009, the Mars Science Laboratory (MSL) will be launched to Mars. The purpose of this mission is to assess biologic potential and geology and to investigate planetary processes of relevance to past habitability. MSL will be able to provide visual, chemical, radiation, and environmental data with its suite of instruments [1]. In order to be selected for the MSL landing site, certain engineering requirements must be met [1] and the area should contain geologic features suggestive of past habitability, so that the overriding science goal of the mission will be attained. There are a total of 33 proposed landing sites as of the first MSL Landing Site Workshop held in Pasadena, CA from May 31st to June 2nd, 2006 [1]. There will be an opportunity to gather high resolution visual and hyperspectral data on all proposed landing sites from the now-orbiting Mars Reconnaissance Orbiter (MRO) which entered martian orbit and began its main science phase in November of 2006 [2]. The data being gathered are from: the high resolution imaging science experiment (HiRISE), the context (CTX) camera and the compact reconnaissance imaging spectrometer (CRISM) onboard the spacecraft. The footprints of these instruments are centered on a single point, and each proposer must submit these coordinates, along with the coordinates of the proposed landing ellipse. Data from these instruments, along with new MOC images and THEMIS mosaics, will be used to enhance our understanding of the geologic and engineering parameters of each site.

Wintertime Secondary Organic Aerosol (SOA) Formation from Oxidation of Volatile Organic Compounds (VOCs) Associated with Oil and Gas Extraction

NASA Astrophysics Data System (ADS)

Murphy, S. M.; Soltis, J.; Field, R. A.; Bates, T. S.; Quinn, P.; De Gouw, J. A.; Veres, P. R.; Warneke, C.; Graus, M.; Gilman, J.; Lerner, B. M.; Koss, A.

2013-12-01

The Uintah Basin is located in a lightly populated area of Northeastern Utah near Dinosaur National Monument. Oil and gas extraction activities in the basin have dramatically increased in recent years due to the application of hydraulic fracturing. The Uintah Basin has experienced numerous high-ozone events during the past several winters with concentrations often exceeding 100 ppb. PM 2.5 monitoring by the city of Vernal, located at the edge of the basin, have shown wintertime concentrations in excess of the EPA 8-hour national standard, though the source and composition of particulates during these events is unclear. The Energy and Environment - Uintah Basin Winter Ozone Study (E&E UBWOS) was conducted during the winters of 2012 and 2013. During the study, intensive measurements of aerosol composition and speciated VOCs were made at a monitoring site near oil and gas extraction activities. Organic aerosol was found to be a major component of PM 2.5 and organic aerosol formation was highly correlated with the production of secondary VOC's. This correlation suggests that the organic aerosol is secondary in nature even though O:C ratios suggest a less oxidized aerosol than often observed in summertime SOA. The ozone levels and organic aerosol mass during 2012 were much lower than those observed in 2013. Calculations of the aerosol yield during both years will be presented along with an analysis of how well observed yields match predictions based on smog-chamber data. The potential for additional aerosol formation in the system will also be discussed.

ISKANDARnet IOMOS: Near real-time equatorial space weather monitoring and alert system in Peninsular Malaysia

NASA Astrophysics Data System (ADS)

Musa, Tajul Ariffin; Leong, Shien Kwun; Abdullah, Khairul Anuar; Othman, Rusli

2012-11-01

This work proposes ISKANDARnet Ionospheric Outburst MOnitoring and alert System (IOMOS), along with Ionospheric Outburst Index (IOX) to develop an operational near real-time space weather service for Malaysia. The IOMOS is based on Global Positioning System (GPS) Network-based Real-Time Kinematic (NRTK) concept which is by nature for atmospheric (ionosphere and troposphere) modeling within the network coverage. The elegance of this solution lies in the fact that IOMOS utilize differential ionospheric residual from network of GPS baselines which incur no additional cost for operation. Users will be informed about the ionospheric perturbation through Short Message Service (SMS), email or Twitter®. This approach will ultimately beneficial for the navigation and satellite positioning communities, particularly during the coming Solar Cycle 24. In addition, a combination of local and global GPS network has been employed to study the equatorial ionosphere geomorphology and climatology in the Malaysian sector. Equatorial Total Electron Content (TEC) over Malaysia shows semi-annual, annual, and seasonal variations with maximum values appearing during equinoctial months and minimum during solstices months. The TEC value during vernal equinox is about 21% higher than autumnal equinox, and December solstice exceeds that at the June solstice by around 14%. It is also found that semi-annual variation is present at all levels of solar activity, whereas June solstice predominates December solstice during high solar activity for annual and seasonal variations. In near future, a near real-time TEC derivation system will be developed to support equatorial ionosphere modeling to enhance space weather service for Malaysia.

Travelling Ionospheric Disturbances Observed During Sudden Stratospheric Warming, Equinox and Solstice Periods with Kharkiv and Millstone Hill Incoherent Scatter Radars

NASA Astrophysics Data System (ADS)

Goncharenko, L. P.; Panasenko, S.; Aksonova, K.; Erickson, P. J.; Domnin, I. F.

2016-12-01

Travelling ionospheric disturbances (TIDs) play a key role in the coupling of different ionospheric regions through momentum an energy transfer. They are thought to be mostly associated with atmospheric gravity waves and are known to strongly affect radio propagation conditions. The incoherent scatter (IS) method enables TIDs detection in such ionospheric parameters as electron density, ion and electron temperatures, and plasma velocity along radar beam, thus providing critical information needed to examine different hypothesis about association of TIDs with their sources. In 2016, several joint measuring campaigns were conducted using Kharkiv (49.6 N, 36.4 E) and Millstone Hill (42.6 N, 288.5 E) IS radars. These campaigns covered the periods of sudden stratospheric warnings (SSW) in February, vernal equinox and summer solstice. For consistency, the data acquired by radars were processed using the same data analysis methods. The results obtained show the TIDs to be detected throughout all observation intervals in February measurements. The differences found in the behavior of TIDs over Kharkiv and Millstone Hill sites may be partially explained by variations in stratospheric wind velocity vectors during SSW period. As for March equinox and June solstice, the prevailing TIDs are observed near solar terminators. Their periods vary mostly in the range of 40 - 80 minutes, relative amplitudes are about 0.05 - 0.3 of the background electron density, and the maximum values are observed at the heights of 200 - 250 km. Systematic long-term observations of wave processes in the ionosphere with multiple IS facilities can reveal interhemispheric variability in TID parameters, give better understanding the mechanisms of TID generation and propagation, and improve regional and global ionospheric models.

Annual cycle of plasma luteinizing hormone and sex hormones in male and female mallards (Anas platyrhynchos)

USGS Publications Warehouse

Donham, R.S.

1979-01-01

Comparisons between 'wild'and 'game farm' mallards (Anas platyrhynchos) were made to assess the differences in the temporal changes of plasma hormones. Seasonal variation in the levels of immunoreactive luteinizing hormone (LH), testosterone, 5 -dihydrotestosterone (DHT), estrone, estradiol-17i?? and progesterone were measured in male and female mallards. In all birds there was a vernal increase in the concentrations of LH and testosterone in plasma which were correlated with the development of the testes and ovaries prior to and during the nesting season. The concentrations of estrogens in the plasma of the females were, in general, slightly higher during the nesting season but were much lower than the levels of testosterone. The highest levels of LH and testosterone in the females coincided precisely with the period of egg laying which occurred approximately one month earlier in game farm females than in wild females. The concentrations of LH and testosterone in the plasma of females decreased rapidly during incubation. In wild males, the decline in levels of these hormones temporally coincided with that of females. In contrast, plasma levels of LH and testosterone of males of the game farm stock remained elevated after the beginning of incubation in females to which they were paired. On the basis of these results and an examination of the literature, it appears that domestication results in: 1) increased reproductive potential through earlier initiation of nesting and by delay of the termination of reproduction until later in the summer; and 2) a decrease in the synchronization of the hormonal events supporting reproduction between the male and female of a pair. Testicular weights and plasma levels of testosterone become higher in game farm and domestic males than in the wild stock but levels of LH are similar.

A High-Altitude Search for Vulcanoids: Progress Report

NASA Astrophysics Data System (ADS)

Durda, D. D.; Stern, S. A.; Terrell, D. C.; Weidenschilling, S. J.

2002-09-01

We are conducting a unique, high-altitude observing campaign to search for vulcanoids, a population of small, asteroid-like bodies hypothesized to reside in the dynamically stable region interior to Mercury's orbit (i.e., orbits with aphelia <0.21 AU). This airborne search campaign utilizes our versatile and highly capable SWUIS-A (Southwest Universal Imaging System - Airborne) instrument flown with the flight astronomer (SAS and DDD) to an altitude of 49,000 MSL aboard NASA F/A-18B aircraft in order to obtain darker twilight conditions for near-Sun observing than are possible from the ground. The first observing run was successfully completed at NASA's Dryden Flight Research Center during the March/April 2002 vernal equinox observing opportunity. On each of the three evening flights we recorded image data covering 250 square degrees of sky centered on the ecliptic from solar elongations of 6-18 deg. Initial reduction of portions of the Mar/Apr 2002 data set demonstrates that we are reliably detecting objects to magnitude V = 9.5 at 15 degrees solar elongation. This is at least a magnitude fainter than the best previous ground-based searches and comparable to the faintest stars visible in our space-based SOHO LASCO C3 coronagraph vulcanoids search. The SWUIS-A instrument itself is capable of imaging objects as faint as magnitude V = 13, corresponding to vulcanoids less than 10 km across, with a sufficiently dark sky background; we are working to mitigate sky background brightness to reach these deeper magnitude limits for a second F/A-18B observing run during the September 2002 autumnal equinox observing opportunity. We thank NASA research pilots Rick Searfoss, Dana Purifoy, and Craig Bomben. This research is supported by the NASA Planetary Astronomy program, NASA's Dryden Flight Research Center, and the National Geographic Society.

Evaluation of novel scoring system named 5-5-5 exacerbation grading scale for allergic conjunctivitis disease.

PubMed

Shoji, Jun; Inada, Noriko; Sawa, Mitsuru

2009-12-01

The objective of this study is to evaluate the practical usefulness of a scoring system using the 5-5-5 exacerbation grading scale for allergic conjunctivitis disease (ACD). Subjects were 103 patients with ACD including 40 patients with vernal keratoconjunctivitis (VKC), 20 patients with atopic keratoconjunctivitis (AKC), and 43 patients with allergic conjunctivitis (AC). The 5-5-5 exacerbation grading scale consists of the following 3 graded groups of clinical observations: the 100-point-grade group (100 points for each observation) includes active giant papillae, gelatinous infiltrates of the limbus, exfoliative epithelial keratopathy, shield ulcer and papillary proliferation at lower palpebral conjunctiva; the 10-point-grade group (10 points for each observation) includes blepharitis, papillary proliferation with velvety appearance, Horner-Trantas spots, edema of bulbal conjunctiva, and superficial punctate keratopathy; and the 1-point-grade group (1 point for each observation) includes papillae at upper palpebral conjunctiva, follicular lesion at lower palpebral conjunctiva, hyperemia of palpebral conjunctiva, hyperemia of bulbal conjunctiva, and lacrimal effusion. The total points in each grade group were determined as the severity score of the 5-5-5 exacerbation grading scale. The median severity scores of the 5-5-5 exacerbation grading scale in VKC, AKC and AC were 243 (range: 12-444), 32.5 (11-344), and 13 (2-33), respectively. The severity score of each ACD disease type was significantly different (P < 0.001, Kruskal-Wallis test). The severity of each type of ACD was classified as severe, moderate, or mild according to the severity score. The 5-5-5 exacerbation grading scale is a useful clinical tool for grading the severity of each type of ACD.

Population structure in the model grass Brachypodium distachyon is highly correlated with flowering differences across broad geographic areas

DOE Office of Scientific and Technical Information (OSTI.GOV)

Tyler, Ludmila; Lee, Scott J.; Young, Nelson D.

The small, annual grass Brachypodium distachyon (L.) Beauv., a close relative of wheat ( Triticum aestivum L.) and barley ( Hordeum vulgare L.), is a powerful model system for cereals and bioenergy grasses. Genome-wide association studies (GWAS) of natural variation can elucidate the genetic basis of complex traits but have been so far limited in B. distachyon by the lack of large numbers of well-characterized and sufficiently diverse accessions. Here, we report on genotyping-by-sequencing (GBS) of 84 B. distachyon, seven B. hybridum, and three B. stacei accessions with diverse geographic origins including Albania, Armenia, Georgia, Italy, Spain, and Turkey. Overmore » 90,000 high-quality single-nucleotide polymorphisms (SNPs) distributed across the Bd21 reference genome were identified. Our results confirm the hybrid nature of the B. hybridum genome, which appears as a mosaic of B. distachyon-like and B. stacei-like sequences. Analysis of more than 50,000 SNPs for the B. distachyon accessions revealed three distinct, genetically defined populations. Surprisingly, these genomic profiles are associated with differences in flowering time rather than with broad geographic origin. High levels of differentiation in loci associated with floral development support the differences in flowering phenology between B. distachyon populations. Genome-wide association studies combining genotypic and phenotypic data also suggest the presence of one or more photoperiodism, circadian clock, and vernalization genes in loci associated with flowering time variation within B. distachyon populations. As a result, our characterization elucidates genes underlying population differences, expands the germplasm resources available for Brachypodium, and illustrates the feasibility and limitations of GWAS in this model grass.« less

Seasonal change of topology and resilience of ecological networks in wetlandscapes

NASA Astrophysics Data System (ADS)

Bin, Kim; Park, Jeryang

2017-04-01

Wetlands distributed in a landscape provide various ecosystem services including habitat for flora and fauna, hydrologic controls, and biogeochemical processes. Hydrologic regime of each wetland at a given landscape varies by hydro-climatic and geological conditions as well as the bathymetry, forming a certain pattern in the wetland area distribution and spatial organization. However, its large-scale pattern also changes over time as this wetland complex is subject to stochastic hydro-climatic forcing in various temporal scales. Consequently, temporal variation in the spatial structure of wetlands inevitably affects the dispersal ability of species depending on those wetlands as habitat. Here, we numerically show (1) the spatiotemporal variation of wetlandscapes by forcing seasonally changing stochastic rainfall and (2) the corresponding ecological networks which either deterministically or stochastically forming the dispersal ranges. We selected four vernal pool regions with distinct climate conditions in California. The results indicate that the spatial structure of wetlands in a landscape by measuring the wetland area frequency distribution changes by seasonal hydro-climatic condition but eventually recovers to the initial state. However, the corresponding ecological networks, which the structure and function change by the change of distances between wetlands, and measured by degree distribution and network efficiency, may not recover to the initial state especially in the regions with high seasonal dryness index. Moreover, we observed that the changes in both the spatial structure of wetlands in a landscape and the corresponding ecological networks exhibit hysteresis over seasons. Our analysis indicates that the hydrologic and ecological resilience of a wetlandcape may be low in a dry region with seasonal hydro-climatic forcing. Implications of these results for modelling ecological networks depending on hydrologic systems especially for conservation purposes are discussed.

Altitudinal and climatic adaptation is mediated by flowering traits and FRI, FLC, and PHYC genes in Arabidopsis.

PubMed

Méndez-Vigo, Belén; Picó, F Xavier; Ramiro, Mercedes; Martínez-Zapater, José M; Alonso-Blanco, Carlos

2011-12-01

Extensive natural variation has been described for the timing of flowering initiation in many annual plants, including the model wild species Arabidopsis (Arabidopsis thaliana), which is presumed to be involved in adaptation to different climates. However, the environmental factors that might shape this genetic variation, as well as the molecular bases of climatic adaptation by modifications of flowering time, remain mostly unknown. To approach both goals, we characterized the flowering behavior in relation to vernalization of 182 Arabidopsis wild genotypes collected in a native region spanning a broad climatic range. Phenotype-environment association analyses identified strong altitudinal clines (0-2600 m) in seven out of nine flowering-related traits. Altitudinal clines were dissected in terms of minimum winter temperature and precipitation, indicating that these are the main climatic factors that might act as selective pressures on flowering traits. In addition, we used an association analysis approach with four candidate genes, FRIGIDA (FRI), FLOWERING LOCUS C (FLC), PHYTOCHROME C (PHYC), and CRYPTOCHROME2, to decipher the genetic bases of this variation. Eleven different loss-of-function FRI alleles of low frequency accounted for up to 16% of the variation for most traits. Furthermore, an FLC allelic series of six novel putative loss- and change-of-function alleles, with low to moderate frequency, revealed that a broader FLC functional diversification might contribute to flowering variation. Finally, environment-genotype association analyses showed that the spatial patterns of FRI, FLC, and PHYC polymorphisms are significantly associated with winter temperatures and spring and winter precipitations, respectively. These results support that allelic variation in these genes is involved in climatic adaptation.

The Vaccinium corymbosum FLOWERING LOCUS T-like gene (VcFT): a flowering activator reverses photoperiodic and chilling requirements in blueberry.

PubMed

Song, Guo-qing; Walworth, Aaron; Zhao, Dongyan; Jiang, Ning; Hancock, James F

2013-11-01

The blueberry FLOWERING LOCUS T ( FT )-like gene ( VcFT ) cloned from the cDNA of a tetraploid, northern highbush blueberry ( Vaccinium corymbosum L.) is able to reverse the photoperiodic and chilling requirements and drive early and continuous flowering. Blueberry is a woody perennial bush with a longer juvenile period than annual crops, requiring vernalization to flower normally. Few studies have been reported on the molecular mechanism of flowering in blueberry or other woody plants. Because FLOWERING LOCUS T (FT) from Arabidopsis thaliana plays a multifaceted role in generating mobile molecular signals to regulate plant flowering time, isolation and functional analysis of the blueberry (Vaccinium corymbosum L.) FT-like gene (VcFT) will facilitate the elucidation of molecular mechanisms of flowering in woody plants. Based on EST sequences, a 525-bpVcFT was identified and cloned from the cDNA of a tetraploid, northern highbush blueberry cultivar, Bluecrop. Ectopic expression of 35S:VcFT in tobacco induced flowering an average of 28 days earlier than wild-type plants. Expression of the 35S:VcFT in the blueberry cultivar Aurora resulted in an extremely early flowering phenotype, which flowered not only during in vitro culture, a growth stage when nontransgenic shoots had not yet flowered, but also in 6-10-week old, soil-grown transgenic plants, in contrast to the fact that at least 1 year and 800 chilling hours are required for the appearance of the first flower of both nontransgenic 'Aurora' and transgenic controls with the gusA. These results demonstrate that the VcFT is a functional floral activator and overexpression of the VcFT is able to reverse the photoperiodic and chilling requirements and drive early and continuous flowering.

An introduction to mid-Atlantic seasonal pools

USGS Publications Warehouse

Brown, L.J.; Jung, R.E.

2005-01-01

Seasonal pools, also known as vernal ponds, provide important ecological services to the mid-Atlantic region. This publication serves as an introduction to seasonal pool ecology and management; it also provides tools for exploring seasonal pools, including a full-color field guide to wildlife. Seasonal pools are defined as having four distinctive features: surface water isolation, periodic drying, small size and shallow depth, and support of a characteristic biological community. Seasonal pools experience regular drying that excludes populations of predatory fish. Thus, pools in the mid-Atlantic region provide critical breeding habitat for amphibian and invertebrate species (e.g., spotted salamander (Ambystoma maculatum), wood frog (Rana sylvatica), and fairy shrimp (Order Anostraca)) that would be at increased risk of predation in more permanent waters. The distinctive features of seasonal pools also make them vulnerable to human disturbance. In the mid-Atlantic region, land-use changes pose the greatest challenges to seasonal pool conservation. Seasonal pools are threatened by direct loss (e.g., filling or draining of the pool) as well as by destruction and fragmentation of adjoining terrestrial habitat. Many of the species that depend on seasonal pools for breeding spend the majority of their lives in the surrounding lands that extend a radius of 1000 feet or more from the pools; these vital habitats are being transected by roads and converted to other land uses. Other threats to seasonal pools include biological introductions and removals, mosquito control practices, amphibian diseases, atmospheric deposition, and climate change. The authors recommend a three-pronged strategy for seasonal pool conservation and management in the mid-Atlantic region: education and research, inventory and monitoring of seasonal pools, and landscape-level planning and management.

Characteristics of the equatorial plasma drifts as obtained by using Canadian Doppler ionosonde over southern tip of India

NASA Astrophysics Data System (ADS)

Sripathi, S.; Singh, Ram; Banola, S.; Sreekumar, Sreeba; Emperumal, K.; Selvaraj, C.

2016-08-01

We present here characteristics of the Doppler drift measurements over Tirunelveli (8.73°N, 77.70°E; dip 0.5°N), an equatorial site over Southern India using Doppler interferometry technique of Canadian ionosonde. Three-dimensional bulk motions of the scatterers as reflected from the ionosphere are derived by using Doppler interferometry technique at selected frequencies using spaced receivers arranged in magnetic E-W and N-S directions. After having compared with Lowell's digisonde drifts at Trivandrum, we studied the temporal and seasonal variabilities of quiet time drifts for the year 2012. The observations showed higher vertical drifts during post sunset in the equinox followed by winter and summer seasons. The comparison of Doppler vertical drifts with the drifts obtained from (a) virtual height and (b) Fejer drift model suggests that Doppler vertical drifts are relatively higher as compared to the drifts obtained from model and virtual height methods. Further, it is seen that vertical drifts exhibited equinoctial asymmetry in prereversal enhancement quite similar to such asymmetry observed in the spread F in the ionograms and GPS L band scintillations. The zonal drifts, on the other hand, showed westward during daytime with mean drifts of ~150-200 m/s and correlated well with equatorial electrojet strength indicating the role of E region dynamo during daytime, while they are eastward during nighttime with mean drifts of ~100 m/s resembling F region dynamo process. Also, zonal drifts showed large westward prior to the spread F onset during autumn equinox than vernal equinox, suggesting strong zonal shears which might cause equinoctial asymmetry in spread F.

A novel high efficiency, low maintenance, hydroponic system for synchronous growth and flowering of Arabidopsis thaliana

PubMed Central

Tocquin, Pierre; Corbesier, Laurent; Havelange, Andrée; Pieltain, Alexandra; Kurtem, Emile; Bernier, Georges; Périlleux, Claire

2003-01-01

Background Arabidopsis thaliana is now the model organism for genetic and molecular plant studies, but growing conditions may still impair the significance and reproducibility of the experimental strategies developed. Besides the use of phytotronic cabinets, controlling plant nutrition may be critical and could be achieved in hydroponics. The availability of such a system would also greatly facilitate studies dealing with root development. However, because of its small size and rosette growth habit, Arabidopsis is hardly grown in standard hydroponic devices and the systems described in the last years are still difficult to transpose at a large scale. Our aim was to design and optimize an up-scalable device that would be adaptable to any experimental conditions. Results An hydroponic system was designed for Arabidopsis, which is based on two units: a seed-holder and a 1-L tank with its cover. The original agar-containing seed-holder allows the plants to grow from sowing to seed set, without transplanting step and with minimal waste. The optimum nitrate supply was determined for vegetative growth, and the flowering response to photoperiod and vernalization was characterized to show the feasibility and reproducibility of experiments extending over the whole life cycle. How this equipment allowed to overcome experimental problems is illustrated by the analysis of developmental effects of nitrate reductase deficiency in nia1nia2 mutants. Conclusion The hydroponic device described in this paper allows to drive small and large scale cultures of homogeneously growing Arabidopsis plants. Its major advantages are its flexibility, easy handling, fast maintenance and low cost. It should be suitable for many experimental purposes. PMID:12556248

Population structure in the model grass Brachypodium distachyon is highly correlated with flowering differences across broad geographic areas

DOE PAGES

Tyler, Ludmila; Lee, Scott J.; Young, Nelson D.; ...

2016-04-29

The small, annual grass Brachypodium distachyon (L.) Beauv., a close relative of wheat ( Triticum aestivum L.) and barley ( Hordeum vulgare L.), is a powerful model system for cereals and bioenergy grasses. Genome-wide association studies (GWAS) of natural variation can elucidate the genetic basis of complex traits but have been so far limited in B. distachyon by the lack of large numbers of well-characterized and sufficiently diverse accessions. Here, we report on genotyping-by-sequencing (GBS) of 84 B. distachyon, seven B. hybridum, and three B. stacei accessions with diverse geographic origins including Albania, Armenia, Georgia, Italy, Spain, and Turkey. Overmore » 90,000 high-quality single-nucleotide polymorphisms (SNPs) distributed across the Bd21 reference genome were identified. Our results confirm the hybrid nature of the B. hybridum genome, which appears as a mosaic of B. distachyon-like and B. stacei-like sequences. Analysis of more than 50,000 SNPs for the B. distachyon accessions revealed three distinct, genetically defined populations. Surprisingly, these genomic profiles are associated with differences in flowering time rather than with broad geographic origin. High levels of differentiation in loci associated with floral development support the differences in flowering phenology between B. distachyon populations. Genome-wide association studies combining genotypic and phenotypic data also suggest the presence of one or more photoperiodism, circadian clock, and vernalization genes in loci associated with flowering time variation within B. distachyon populations. As a result, our characterization elucidates genes underlying population differences, expands the germplasm resources available for Brachypodium, and illustrates the feasibility and limitations of GWAS in this model grass.« less

Clinical evaluation of total IgE in tears of patients with allergic conjunctivitis disease using a novel application of the immunochromatography method.

PubMed

Inada, Noriko; Shoji, Jun; Kato, Hiroshi; Kiely, Surayah; Mulyanto; Sawa, Mitsuru

2009-12-01

The determination of total IgE in tears is useful as a diagnostic tool in allergic conjunctivitis disease (ACD). We evaluated the efficacy of this diagnostic tool for ACD, which is a clinically applicable novel immunochromagraphic method to determine total IgE in tears. The subjects comprised 4 groups: 15 patients with vernal keratoconjunctivitis (VKC group), 8 patients with atopic keratoconjunctivitis (AKC group), 18 patients with allergic conjunctivitis (AC group), and 7 normal healthy volunteers as a control (control group). Tears were sampled using filter paper, and the total IgE in tears was determined by immunochromatography assay. Semiquantitative determination was carried out by examining the intensity of the colored line using an immunochromatoreader (IgE index). The relationship between IgE indices in tears and total IgE levels in serum or between IgE indices and the clinical scores of ACD was examined. The positive ratio obtained by this novel application of the immunochromatography assay was 38 of the 41 in the patients with ACD and none in the 7 controls. IgE indices for the VKC group, AKC group and AC group were 27.5 +/- 15.6, 19.8 +/- 15.8, and 4.0 +/- 3.1 (mean +/- SD), respectively. IgE indices in tears showed significant correlation with both total IgE levels in serum (P < 0.001, r = 0.76) and clinical scores of ACD (P < 0.001, r = 0.57). The novel application of the immunochromatography assay to assess the total IgE in tears is a useful clinical tool to investigate ACD.

The sweet cherry (Prunus avium) FLOWERING LOCUS T gene is expressed during floral bud determination and can promote flowering in a winter-annual Arabidopsis accession.

PubMed

Yarur, Antonia; Soto, Esteban; León, Gabriel; Almeida, Andrea Miyasaka

2016-12-01

FT gene is expressed in leaves and buds and is involved in floral meristem determination and bud development in sweet cherry. In woody fruit perennial trees, floral determination, dormancy and bloom, depends on perception of different environmental and endogenous cues which converge to a systemic signaling gene known as FLOWERING LOCUS T (FT). In long-day flowering plants, FT is expressed in the leaves on long days. The protein travels through the phloem to the shoot apical meristem, where it induces flower determination. In perennial plants, meristem determination and flowering are separated by a dormancy period. Meristem determination takes place in summer, but flowering occurs only after a dormancy period and cold accumulation during winter. The roles of FT are not completely clear in meristem determination, dormancy release, and flowering in perennial plants. We cloned FT from sweet cherry (Prunus avium) and analyzed its expression pattern in leaves and floral buds during spring and summer. Phylogenetic analysis shows high identity of the FT cloned sequence with orthologous genes from other Rosaceae species. Our results show that FT is expressed in both leaves and floral buds and increases when the daylight reached 12 h. The peak in FT expression was coincident with floral meristem identity genes expression and morphological changes typical of floral meristem determination. The Edi-0 Arabidopsis ecotype, which requires vernalization to flower, was transformed with a construct for overexpression of PavFT. These transgenic plants showed an early-flowering phenotype without cold treatment. Our results suggest that FT is involved in floral meristem determination and bud development in sweet cherry. Moreover, we show that FT is expressed in both leaves and floral buds in this species, in contrast to annual plants.

Soil Biogeochemistry in a Changing Climate: Effect of Snow Removal

NASA Astrophysics Data System (ADS)

Patel, K.; Tatariw, C.; Fernandez, I. J.; Macrae, J. D.; Ohno, T.

2016-12-01

Winter snowpack plays an important role in ecosystem functioning, thermally insulating the subnivean soil from freezing temperatures. Wintertime microbial mineralization of organic material results in accumulation of nutrients under the snowpack, which are available post-melt for plant root uptake. The northeastern United States has experienced declining snow accumulation, and climate models project this trend will continue in the future. Intermittent and reduced snow cover increases soil freezing and frost damage, which can have implications on spring nutrient availability and forest productivity. We conducted a 2-year snow removal experiment in the Dwight B. DeMeritt Forest at the University of Maine to study subnivean winter processes, and to examine the effect of a decreased snowpack on soil winter and spring biogeochemistry. Surface organic soils were collected during winter and spring of 2015 and 2016, years with sharply contrasting snow accumulation, to track temporal changes in nutrient dynamics as the system evolved from under the snowpack. Laboratory extractions and incubations were performed to quantify the inorganic available nitrogen, dissolved organic carbon (DOC), and potential net N-mineralization (PNNM) in field moist soils. Snow removal resulted in decreased winter soil temperatures (2-8°C colder than the reference plots). There was an increased incidence of rain-on-soil events in the winter, forming concrete frost. Freeze-thaw cycles in the treatment plots resulted in higher NH4-N and DOC concentrations, but lower PNNM, compared to the reference plots. Treatment effects on DOC and NH4-N concentrations were not seen in the spring, although the effects on PNNM persisted. Our findings demonstrated that freeze-thaw cycles play an important role in the timing and magnitude of soil nutrient availability during the vernal transition. Understanding these processes becomes increasingly important when defining forest ecosystem response to a changing climate.

Orbit characteristics of the tristatic EISCAT UHF meteors

NASA Astrophysics Data System (ADS)

Szasz, C.; Kero, J.; Meisel, D. D.; Pellinen-Wannberg, A.; Wannberg, G.; Westman, A.

2008-07-01

The tristatic EISCAT 930-MHz UHF system is used to determine the absolute geocentric velocities of meteors detected with all three receivers simultaneously at 96 km, the height of the common radar volume. The data used in this study were taken between 2002 and 2005, during four 24-h runs at summer/winter solstice and vernal/autumnal equinox to observe the largest seasonal difference. The observed velocities of 410 tristatic meteors are integrated back through the Earth atmosphere to find their atmospheric entry velocities using an ablation model. Orbit calculations are performed by taking zenith attraction, Earth rotation as well as obliquity of the ecliptic into account. The results are presented in the form of different orbital characteristics. None of the observed meteors appears to be of extrasolar or asteroidal origin; comets, particularly short-period (<200 yr) ones, may be the dominant source for the particles observed. About 40 per cent of the radiants can be associated with the north apex sporadic meteor source and 58 per cent of the orbits are retrograde. There is evidence of resonance gaps at semimajor axis values corresponding to commensurabilities with Jupiter, which may be the first convincing evidence of Jupiter's gravitational influence on the population of small sporadic meteoroids surveyed by radar. The geocentric velocity distribution is bimodal with a prograde population centred around 38 kms-1 and a retrograde population peaking at 59 kms-1. The EISCAT radar system is located close to the Arctic Circle, which means that the North Ecliptic Pole (NEP) is near zenith once every 24 h, i.e. during each observational period. In this particular geometry, the local horizon coincides with the ecliptic plane. The meteoroid influx should therefore be directly comparable throughout the year.

Transcriptomic Insights into Phenological Development and Cold Tolerance of Wheat Grown in the Field1[OPEN

PubMed Central

Li, Qiang; Byrns, Brook; Badawi, Mohamed A.; Diallo, Abdoulaye Banire; Danyluk, Jean; Sarhan, Fathey; Zou, Jitao

2018-01-01

Cold acclimation and winter survival in cereal species is determined by complicated environmentally regulated gene expression. However, studies investigating these complex cold responses are mostly conducted in controlled environments that only consider the responses to single environmental variables. In this study, we have comprehensively profiled global transcriptional responses in crowns of field-grown spring and winter wheat (Triticum aestivum) genotypes and their near-isogenic lines with the VRN-A1 alleles swapped. This in-depth analysis revealed multiple signaling, interactive pathways that influence cold tolerance and phenological development to optimize plant growth and development in preparation for a wide range of over-winter stresses. Investigation of genetic differences at the VRN-A1 locus revealed that a vernalization requirement maintained a higher level of cold response pathways while VRN-A1 genetically promoted floral development. Our results also demonstrated the influence of genetic background on the expression of cold and flowering pathways. The link between delayed shoot apex development and the induction of cold tolerance was reflected by the gradual up-regulation of abscisic acid-dependent and C-REPEAT-BINDING FACTOR pathways. This was accompanied by the down-regulation of key genes involved in meristem development as the autumn progressed. The chromosome location of differentially expressed genes between the winter and spring wheat genetic backgrounds showed a striking pattern of biased gene expression on chromosomes 6A and 6D, indicating a transcriptional regulation at the genome level. This finding adds to the complexity of the genetic cascades and gene interactions that determine the evolutionary patterns of both phenological development and cold tolerance traits in wheat. PMID:29259104

Genetic analyses of bolting in bulb onion (Allium cepa L.).

PubMed

Baldwin, Samantha; Revanna, Roopashree; Pither-Joyce, Meeghan; Shaw, Martin; Wright, Kathryn; Thomson, Susan; Moya, Leire; Lee, Robyn; Macknight, Richard; McCallum, John

2014-03-01

We present the first evidence for a QTL conditioning an adaptive trait in bulb onion, and the first linkage and population genetics analyses of candidate genes involved in photoperiod and vernalization physiology. Economic production of bulb onion (Allium cepa L.) requires adaptation to photoperiod and temperature such that a bulb is formed in the first year and a flowering umbel in the second. 'Bolting', or premature flowering before bulb maturation, is an undesirable trait strongly selected against by breeders during adaptation of germplasm. To identify genome regions associated with adaptive traits we conducted linkage mapping and population genetic analyses of candidate genes, and QTL analysis of bolting using a low-density linkage map. We performed tagged amplicon sequencing of ten candidate genes, including the FT-like gene family, in eight diverse populations to identify polymorphisms and seek evidence of differentiation. Low nucleotide diversity and negative estimates of Tajima's D were observed for most genes, consistent with purifying selection. Significant population differentiation was observed only in AcFT2 and AcSOC1. Selective genotyping in a large 'Nasik Red × CUDH2150' F2 family revealed genome regions on chromosomes 1, 3 and 6 associated (LOD > 3) with bolting. Validation genotyping of two F2 families grown in two environments confirmed that a QTL on chromosome 1, which we designate AcBlt1, consistently conditions bolting susceptibility in this cross. The chromosome 3 region, which coincides with a functionally characterised acid invertase, was not associated with bolting in other environments, but showed significant association with bulb sucrose content in this and other mapping pedigrees. These putative QTL and candidate genes were placed on the onion map, enabling future comparative studies of adaptive traits.

Functional characterization of DnSIZ1, a SIZ/PIAS-type SUMO E3 ligase from Dendrobium.

PubMed

Liu, Feng; Wang, Xiao; Su, Mengying; Yu, Mengyuan; Zhang, Shengchun; Lai, Jianbin; Yang, Chengwei; Wang, Yaqin

2015-09-17

SUMOylation is an important post-translational modification of eukaryotic proteins that involves the reversible conjugation of a small ubiquitin-related modifier (SUMO) polypeptide to its specific protein substrates, thereby regulating numerous complex cellular processes. The PIAS (protein inhibitor of activated signal transducers and activators of transcription [STAT]) and SIZ (scaffold attachment factor A/B/acinus/PIAS [SAP] and MIZ) proteins are SUMO E3 ligases that modulate SUMO conjugation. The characteristic features and SUMOylation mechanisms of SIZ1 protein in monocotyledon are poorly understood. Here, we examined the functions of a homolog of Arabidopsis SIZ1, a functional SIZ/PIAS-type SUMO E3 ligase from Dendrobium. In Dendrobium, the predicted DnSIZ1 protein has domains that are highly conserved among SIZ/PIAS-type proteins. DnSIZ1 is widely expressed in Dendrobium organs and has a up-regulated trend by treatment with cold, high temperature and wounding. The DnSIZ1 protein localizes to the nucleus and shows SUMO E3 ligase activity when expressed in an Escherichia coli reconstitution system. Moreover, ectopic expression of DnSIZ1 in the Arabidopsis siz1-2 mutant partially complements several phenotypes and results in enhanced levels of SUMO conjugates in plants exposed to heat shock conditions. We observed that DnSIZ1 acts as a negative regulator of flowering transition which may be via a vernalization-induced pathway. In addition, ABA-hypersensitivity of siz1-2 seed germination can be partially suppressed by DnSIZ1. Our results suggest that DnSIZ1 is a functional homolog of the Arabidopsis SIZ1 with SUMO E3 ligase activity and may play an important role in the regulation of Dendrobium stress responses, flowering and development.

Spatial Distribution of Ozone Precursors in the Uinta Basin

NASA Astrophysics Data System (ADS)

Mangum, C. D.; Lyman, S. N.

2012-12-01

Wintertime ozone mixing ratios in the Uinta Basin of Utah exceeding the EPA National Ambient Air Quality Standards measured during 2010 and 2011 led to a large campaign carried out in 2012 that included a study of the spatial distribution of ozone precursors in the Basin. In this study, speciated hydrocarbon mixing ratios (compounds with 6-11 carbon atoms) were measure at 10 sites around the Uinta Basin with Radiello passive samplers, and NO2, NO, and NOx (NO2 + NO) mixing ratios were measured at 16 sites with Ogawa passive sampler and active sampling instruments. Analysis of the Radiello passive samplers was carried out by CS2 desorption and analyzed on a Shimadzu QP-2010 GCMS. Analysis of the Ogawa passive samplers was done via 18.2 megohm water extraction and analyzed with a Dionex ICS-3000 ion chromatography system. February average hydrocarbon mixing ratios were highest in the area of maximum gas production (64.5 ppb as C3), lower in areas of oil production (24.3-30.0 ppb as C3), and lowest in urban areas and on the Basin rim (1.7-17.0 ppb as C3). February average for NOx was highest in the most densely populated urban area, Vernal (11.2 ppb), lower in in the area of maximum gas production (6.1 ppb), and lower still in areas of oil production and on the Basin Rim (0.6-2.7 ppb). Hydrocarbon speciation showed significant differences in spatial distribution around the Basin. Higher mixing ratios of toluene and other aromatics were much more prevalent in gas producing areas than oil producing areas. Similar mixing ratios of straight-chain alkane were observed in both areas. Higher mixing ratios of cycloalkanes were slightly more prevalent in gas producing than oil producing areas.

Prediction of gene-phenotype associations in humans, mice, and plants using phenologs.

PubMed

Woods, John O; Singh-Blom, Ulf Martin; Laurent, Jon M; McGary, Kriston L; Marcotte, Edward M

2013-06-21

Phenotypes and diseases may be related to seemingly dissimilar phenotypes in other species by means of the orthology of underlying genes. Such "orthologous phenotypes," or "phenologs," are examples of deep homology, and may be used to predict additional candidate disease genes. In this work, we develop an unsupervised algorithm for ranking phenolog-based candidate disease genes through the integration of predictions from the k nearest neighbor phenologs, comparing classifiers and weighting functions by cross-validation. We also improve upon the original method by extending the theory to paralogous phenotypes. Our algorithm makes use of additional phenotype data--from chicken, zebrafish, and E. coli, as well as new datasets for C. elegans--establishing that several types of annotations may be treated as phenotypes. We demonstrate the use of our algorithm to predict novel candidate genes for human atrial fibrillation (such as HRH2, ATP4A, ATP4B, and HOPX) and epilepsy (e.g., PAX6 and NKX2-1). We suggest gene candidates for pharmacologically-induced seizures in mouse, solely based on orthologous phenotypes from E. coli. We also explore the prediction of plant gene-phenotype associations, as for the Arabidopsis response to vernalization phenotype. We are able to rank gene predictions for a significant portion of the diseases in the Online Mendelian Inheritance in Man database. Additionally, our method suggests candidate genes for mammalian seizures based only on bacterial phenotypes and gene orthology. We demonstrate that phenotype information may come from diverse sources, including drug sensitivities, gene ontology biological processes, and in situ hybridization annotations. Finally, we offer testable candidates for a variety of human diseases, plant traits, and other classes of phenotypes across a wide array of species.

Seasonal/Latitudinal Models of Stratospheric Photochemistry on Saturn

NASA Astrophysics Data System (ADS)

Moses, J. I.; Greathouse, T. K.

2004-11-01

To date, most investigations of stratospheric photochemistry on the outer planets have involved one-dimensional (1-D) ``global-average'' or single-latitude models for a single season. With Cassini CIRS poised to map hydrocarbon distributions across Saturn, and with advances in detector technology and telescope size for Earth-based observations allowing composition and temperatures to be derived as a function of latitude, we are now in a position to evaluate the effectiveness of 1-D models in describing the stratospheric composition. Are 2-D models that include meridional transport necessary to reproduce the observed hydrocarbon latitudinal distributions, or can 1-D seasonal models provide an accurate description? In order to evaluate these questions, we have developed a realistic, time-variable, 1-D seasonal model for stratospheric photochemistry on Saturn. The model accounts for variations in orbital position and in ultraviolet flux due to solar-cycle variations and ring-shadow effects. The results for one Saturnian year, starting at Ls = 0o in 1980 and running until the next vernal equinox in 2009, are presented for numerous latitudes. Due to the long vertical diffusion time scale at pressures greater than ˜1 mbar, we find that seasonal effects are more pronounced at high altitudes. In addition, a phase lag between insolation and chemical response increases with increasing pressure. In the summer hemisphere, hydrocarbon abundances do not exhibit much variation with latitude because the increase in the length of the day with increasing latitude counterbalances the increasing solar zenith angle, causing the daily-averaged insolation to remain nearly constant over a wide range of latitudes. Latitudinal variations are more pronounced during other seasons. We compare our model results with various observations.

Land-Sea relationships of climate-related records: example of the Holocene in the eastern Canadian Arctic and Greenland

NASA Astrophysics Data System (ADS)

de Vernal, Anne; Fréchette, Bianca; Hillaire-Marcel, Claude

2017-04-01

Anne de Vernal, Bianca Fréchette, Claude Hillaire-Marcel Important progresses have been made to reconstruct climate and ocean changes through time. However, there is often a hiatus between the land-based climate reconstructions and paleoceanographical data. The reconstructed parameters are not the same (e.g. surface air temperature vs. sea-surface temperature). Moreover, the spatial (local to regional) and temporal dimensions (seasonal, annual to multi-decadal) of proxy-data are often inconsistent, thus preventing direct correlation of time series and often leading to uncertainties in multi-site, multi-proxy compilations. Here, we address the issue of land-sea relationships in the eastern Canadian Arctic-Baffin Bay-Labrador Sea-western Greenland based on the examination of different climate-related information from marine cores (dinocysts) collected nearshore vs. offshore, ice cores (isotopes), fjord and lake data (pollen). The combined information tends to indicate that "climate" changes are not easily neither adequately captured by temperature and temperature shifts. However, the seasonal contrast of temperatures seems to be a key parameter. Whereas it is often attenuated offshore, it is generally easy to reconstruct nearshore, where water stratification is usually stronger. The confrontation of data also shows a relationship between ice core data and sea-ice cover and/or sea-surface salinity, suggesting that air-sea exchanges in basins surrounding ice sheets play a significant role with respect to their isotopic composition. On the whole, combined onshore-offshore data consistently suggest a two-step shift towards optimal summer and winter conditions the circum Baffin Bay and northern Labrador Sea at 7.5 and 6 ka BP. These delayed optimal conditions seem to result from ice-meltwater discharges maintaining low salinity conditions in marine surface waters and thus a strong seasonality.

The effect of lunarlike satellites on the orbital infrared light curves of Earth-analog planets.

PubMed

Moskovitz, Nicholas A; Gaidos, Eric; Williams, Darren M

2009-04-01

We have investigated the influence of lunarlike satellites on the infrared orbital light curves of Earth-analog extrasolar planets. Such light curves will be obtained by NASA's Terrestrial Planet Finder (TPF) and ESA's Darwin missions as a consequence of repeat observations to confirm the companion status of a putative planet and determine its orbit. We used an energy balance model to calculate disk-averaged infrared (bolometric) fluxes from planet-satellite systems over a full orbital period (one year). The satellites are assumed to lack an atmosphere, have a low thermal inertia like that of the Moon, and span a range of plausible radii. The planets are assumed to have thermal and orbital properties that mimic those of Earth, while their obliquities and orbital longitudes of inferior conjunction remain free parameters. Even if the gross thermal properties of the planet can be independently constrained (e.g., via spectroscopy or visible-wavelength detection of specular glint from a surface ocean), only the largest (approximately Mars-sized) lunarlike satellites can be detected by light curve data from a TPF-like instrument (i.e., one that achieves a photometric signal-to-noise ratio of 10 to 20 at infrared wavelengths). Nondetection of a lunarlike satellite can obfuscate the interpretation of a given system's infrared light curve so that it may resemble a single planet with high obliquity, different orbital longitude of vernal equinox relative to inferior conjunction, and in some cases drastically different thermal characteristics. If the thermal properties of the planet are not independently established, then the presence of a lunarlike satellite cannot be inferred from infrared data, which would thus demonstrate that photometric light curves alone can only be used for preliminary study, and the addition of spectroscopic data will be necessary.

[Morphological characteristics of cornea in patients with vernal keratoconjunctivitis by in vivo laser scanning confocal microscopy].

PubMed

Le, Qi-hua; Hong, Jia-xu; Zhu, Wen-qing; Sun, Xing-huai; Xu, Jian-jiang

2011-05-01

To explore the morphological characteristics on cornea in patients with vernal keratoconjunctivitis (VKC) by the application of in vivo laser scanning confocal microscopy (LSCM). The experimental design was retrospective observation case series (case control study). Twenty-six patients, each diagnosed as bilateral VKC, were enrolled in the study, among which 13 were tarsal form, 5 were bulbar form and the rest were mixed form. Nine patients had the clinical course less than one year, eight subjects longer than three years, and the rest between them. Another twenty-six healthy volunteers with matching age and gender were selected as normal control. All participants had their right eyes examined with the in vivo confocal microscopy (HRT II/RCM). Central cornea and superior peripheral cornea were chosen as the examination points. The images were recorded automatically and cellular density of each layer was analyzed by installed software. Software ImageJ was utilized to analyze the density, diameter, branch number and tortuosity of subbasal nerve fiber in VKC patients. Independent t test was performed to assess the differences on cellular density between VKC patients and normal control, as well as those between central and peripheral cornea in VKC patients. Fisher chi-square test was used to compare the infiltration rate of Langerhans cells in corneal epithelium between VKC patients and controls. ANOVA was applied to assess the differences in cellular density among three subtypes, as well as among different duration of VKC. Independent t-test and chi-square test were applied to analyze the parameters of subbasal nerve fiber. The morphological changes in cornea included the absence of superficial hyperreflective polygonal epithelial cells, infiltration of Langerhans cells in and(or) underneath corneal epithelium and activation of keratocytes in anterior stroma. Corneal epithelium conjunctivalization and stromal neovascularization could be identified in patients with corneal neovascular epithelium. Longitudinal or oblique dark striae could be found in the posterior stroma in patients with complicated keratoconus. The density of epithelial cells at central and peripheral cornea in healthy controls were (6033.1 ± 998.7) cells/mm(2) and (6098.4 ± 298.3) cells/mm(2), while that in VKC patients were (5972.2 ± 1148.2) cells/mm(2) and (6178.5 ± 318.9) cells/mm(2) respectively, the differences being no statistical significant between them (t = 1.191, 1.011; P = 0.238, 0.318). However, it's found in VKC patients that cellular density at peripheral cornea was significantly higher than that at central area (t = 2.249, P = 0.03). The density of anterior stromal cells at central and peripheral cornea in healthy controls was (1001.4 ± 125.3) cells/mm(2) and (924.6 ± 201.4) cells/mm(2), while that in VKC patients was (1184.5 ± 115.3) cells/mm(2) and (1101.4 ± 151.1) cells/mm(2), the difference bearing no statistical significance (t = 6.617, 3.439; P = 0.001). The density of posterior stromal cells in normal subjects and VKC patients was (537.7 ± 42.6) cells/mm(2) and (548.7 ± 79.8) cells/mm(2), that of endothelial cells was (2985.7 ± 401.2) cells/mm(2) and (3021.5 ± 383.3) cells/mm(2), respectively, neither difference had statistical significance (t = 0.174, 1.112; P = 0.864, 0.282). Langerhans cell infiltration could be identified in 61.5% (16 cases) VKC patients, which was significantly higher than normal control (2 cases, 7.7%) (χ(2) = 12.49, P = 0.001). Furthermore, much intense Langerhans cells infiltration was found in bulbar form and mix form than tarsal form. (t = 6.617, P = 0.001). The density and diameter of subbasal nerve fiber in VKC patients decreased significantly than those in normal subjects, whereas the tortuosity increased significantly. The morphological changes of cornea in VKC patients mainly involve corneal epithelium, subbasal nerve fiber and anterior stroma. In vivo LSCM is helpful in discriminating the subtypes of VKC.

Population Dynamics of Aphids on Cereals: Digging in the Time-Series Data to Reveal Population Regulation Caused by Temperature

PubMed Central

Brabec, Marek; Honěk, Alois; Pekár, Stano; Martinková, Zdenka

2014-01-01

Aphid populations show periodic fluctuations and many causes are attributed to their dynamic. We investigated the regulation by temperature of the aphid populations composed of Metopolophium dirhodum, Sitobion avenae, and Rhopalosiphum padi on winter wheat using a 24 years long time series data. We computed the sum of daily temperatures above 5°C, the threshold temperature for aphid development, and the sum of daily temperatures within the [0(threshold for wheat development),5] °C interval. Applying Generalised Additive Model framework we tested influences of temperature history expressed via degree days before the start of the aphid immigration on the length of their occurrence. We aimed to estimate the magnitude and direction of this influence, and how far to the past before the start of the aphid season the temperature effect goes and then identify processes responsible for the effect. We fitted four models that differed in the way of correcting for abundance in the previous year and in specification of temperature effects. Abundance in the previous year did not affect the length of period of aphid population growth on wheat. The temperature effect on the period length increased up to 123 days before the start of the current season, i.e. when wheat completed vernalization. Increased sum of daily temperatures above 5°C and the sum of daily temperatures within the [0,5] °C interval both shortened the length of period of aphid population growth. Stronger effect of the latter suggests that wheat can escape from aphid attacks if during winter temperatures range from 0 to 5°C. The temperature influence was not homogeneous in time. The strongest effect of past temperature was about 50 to 80 and 90 to 110 days before the beginning of the current aphid season indicating important role of termination of aphid egg dormancy and egg hatching. PMID:25184219

Estimating inter-annual variability in winter wheat sowing dates from satellite time series in Camargue, France

NASA Astrophysics Data System (ADS)

Manfron, Giacinto; Delmotte, Sylvestre; Busetto, Lorenzo; Hossard, Laure; Ranghetti, Luigi; Brivio, Pietro Alessandro; Boschetti, Mirco

2017-05-01

Crop simulation models are commonly used to forecast the performance of cropping systems under different hypotheses of change. Their use on a regional scale is generally constrained, however, by a lack of information on the spatial and temporal variability of environment-related input variables (e.g., soil) and agricultural practices (e.g., sowing dates) that influence crop yields. Satellite remote sensing data can shed light on such variability by providing timely information on crop dynamics and conditions over large areas. This paper proposes a method for analyzing time series of MODIS satellite data in order to estimate the inter-annual variability of winter wheat sowing dates. A rule-based method was developed to automatically identify a reliable sample of winter wheat field time series, and to infer the corresponding sowing dates. The method was designed for a case study in the Camargue region (France), where winter wheat is characterized by vernalization, as in other temperate regions. The detection criteria were chosen on the grounds of agronomic expertise and by analyzing high-confidence time-series vegetation index profiles for winter wheat. This automatic method identified the target crop on more than 56% (four-year average) of the cultivated areas, with low commission errors (11%). It also captured the seasonal variability in sowing dates with errors of ±8 and ±16 days in 46% and 66% of cases, respectively. Extending the analysis to the years 2002-2012 showed that sowing in the Camargue was usually done on or around November 1st (±4 days). Comparing inter-annual sowing date variability with the main local agro-climatic drivers showed that the type of preceding crop and the weather conditions during the summer season before the wheat sowing had a prominent role in influencing winter wheat sowing dates.

Exploring drivers of wetland hydrologic fluxes across parameters and space

NASA Astrophysics Data System (ADS)

Jones, C. N.; Cheng, F. Y.; Mclaughlin, D. L.; Basu, N. B.; Lang, M.; Alexander, L. C.

2017-12-01

Depressional wetlands provide diverse ecosystem services, ranging from critical habitat to the regulation of landscape hydrology. The latter is of particular interest, because while hydrologic connectivity between depressional wetlands and downstream waters has been a focus of both scientific research and policy, it remains difficult to quantify the mode, magnitude, and timing of this connectivity at varying spatial and temporary scales. To do so requires robust empirical and modeling tools that accurately represent surface and subsurface flowpaths between depressional wetlands and other landscape elements. Here, we utilize a parsimonious wetland hydrology model to explore drivers of wetland water fluxes in different archetypal wetland-rich landscapes. We validated the model using instrumented sites from regions that span North America: Prairie Pothole Region (south-central Canada), Delmarva Peninsula (Mid-Atlantic Coastal Plain), and Big Cypress Swamp (southern Florida). Then, using several national scale datasets (e.g., National Wetlands Inventory, USFWS; National Hydrography Dataset, USGS; Soil Survey Geographic Database, NRCS), we conducted a global sensitivity analysis to elucidate dominant drivers of simulated fluxes. Finally, we simulated and compared wetland hydrology in five contrasting landscapes dominated by depressional wetlands: prairie potholes, Carolina and Delmarva bays, pocosins, western vernal pools, and Texas coastal prairie wetlands. Results highlight specific drivers that vary across these regions. Largely, hydroclimatic variables (e.g., PET/P ratios) controlled the timing and magnitude of wetland connectivity, whereas both wetland morphology (e.g., storage capacity and watershed size) and soil characteristics (e.g., ksat and confining layer depth) controlled the duration and mode (surface vs. subsurface) of wetland connectivity. Improved understanding of the drivers of wetland hydrologic connectivity supports enhanced, region-specific management and conservation of these critical ecosystems through more informed decision-making. Findings and conclusions expressed in this article are those of the authors and do not necessarily reflect the views or policies of the US EPA or USFWS.

Main Ionospheric Trough and Equatorial Ionization Anomaly During Substorms With the Different UT Onset Moments

NASA Astrophysics Data System (ADS)

Klimenko, M. V.; Klimenko, V. V.; Bryukhanov, V. V.

2007-05-01

In the given work the numerical calculation results of ionospheric effects of four modeling substorms which have begun in 00, 06, 12 and 18 UT are presented. Calculations are executed on the basis of Global Self-consistent Model of the Thermosphere, Ionosphere and Protonosphere (GSM TIP), developed in WD IZMIRAN, added by the new block of calculation of electric fields in the ionosphere of the Earth for vernal equinox conditions in the minimum of solar activity. In calculations we considered superposition of magnetospheric convection electric field (at set potential differences through polar caps and field aligned currents of the second zone with taking into account of particle precipitation) and dynamo field generated by thermospheric winds without taking into account the tides. It is shown, that in the given statement of problem the substorms cause strong positive disturbances in F-region of ionosphere in night sector. Negative disturbances are much less and arise, mainly, at night in the middle and low latitudes. During substorms longitudinal extent of main ionospheric trough increases. The substorm beginning in 18 UT, causes negative disturbances in high latitudes except for a southern polar cap. Besides there is "stratification" of the main ionospheric trough. As a result in southern hemisphere the additional high-latitude trough which is absent in quiet conditions is formed. "Stratification" of the main ionospheric trough occurs in northern hemisphere at 6 hours after the beginning of the substorm. These "stratifications" are consequence non-stationary magnetospheric convection. Distinction between these events consists that "stratification" in a southern hemisphere occurs in active phase of substorm, and in northern hemisphere in recovery phase. During a substorm beginning in 00 UT, foF2 increases in all northern polar cap. Positive disturbances of foF2 in the equatorial anomaly region cause all presented substorms, except for a substorm beginning in 18 UT. This substorm causes small negative disturbances in the equatorial anomaly region in the Indian longitudinal sector.

Observations of Thermospheric Horizontal Winds at Watson Lake, Yukon Territory (lambda=65 Deg N)

NASA Technical Reports Server (NTRS)

Niciejewski, R. J.; Killeen, T. L.; Solomon, Stanley C.

1996-01-01

Fabry-Perot interferometer observations of the thermospheric O I (6300 A) emission have been conducted from an airglow observatory at a dark field site in the southeastern Yukon Territory, Canada, for the period November 1991 to April 1993. The experiment operated in unattended, remote fashion, has resulted in a substantial data set from which mean neutral winds have been determined. Dependent upon geomagnetic activity, the nocturnal location of the site is either equatorward of the auroral oval or within oval boundaries. The data set is rich enough to permit hourly binning of neutral winds based upon the K(sub p) geomagnetic disturbance index as well as the season. For cases of low geomagnetic activity the averaged vector horizontal neutral wind exhibits the characteristics of a midlatitude site displaying antisunward pressure-gradient-driven winds. As the geomagnetic activity rises in the late afternoon and evening winds slowly rotate sunward in an anticlockwise direction, initially remaining near 100 m/s in speed but eventually increasing to 300 m/s for K(sub p) greater than 5. For the higher levels of activity the observed neutral wind flow pattern resembles a higher-latitude polar cap pattern characterized by ion drag forcing of thermospheric neutral gases. In addition, rotational Coriolis forcing on the dusk side enhances the ion drag forcing, resulting in dusk winds which trace out the clockwise dusk cell plasma flow. On the dawn side the neutral winds also rotate in an anticlockwise direction as the strength of geomagnetic disturbances increase. Since the site is located at a transition latitude between the midlatitude and the polar cap the data set provides a sensitive test for general circulation models which attempt to parameterize the contribution of magnetospheric processes. A comparison with the Vector Spherical Harmonic (VSH) model indicates several regions of poor correspondence for December solstice conditions but reasonable agreement for the vernal equinox.

Evolutionary and Taxonomic Implications of Variation in Nuclear Genome Size: Lesson from the Grass Genus Anthoxanthum (Poaceae)

PubMed Central

Chumová, Zuzana; Krejčíková, Jana; Mandáková, Terezie; Suda, Jan; Trávníček, Pavel

2015-01-01

The genus Anthoxanthum (sweet vernal grass, Poaceae) represents a taxonomically intricate polyploid complex with large phenotypic variation and its evolutionary relationships still poorly resolved. In order to get insight into the geographic distribution of ploidy levels and assess the taxonomic value of genome size data, we determined C- and Cx-values in 628 plants representing all currently recognized European species collected from 197 populations in 29 European countries. The flow cytometric estimates were supplemented by conventional chromosome counts. In addition to diploids, we found two low (rare 3x and common 4x) and one high (~16x–18x) polyploid levels. Mean holoploid genome sizes ranged from 5.52 pg in diploid A. alpinum to 44.75 pg in highly polyploid A. amarum, while the size of monoploid genomes ranged from 2.75 pg in tetraploid A. alpinum to 9.19 pg in diploid A. gracile. In contrast to Central and Northern Europe, which harboured only limited cytological variation, a much more complex pattern of genome sizes was revealed in the Mediterranean, particularly in Corsica. Eight taxonomic groups that partly corresponded to traditionally recognized species were delimited based on genome size values and phenotypic variation. Whereas our data supported the merger of A. aristatum and A. ovatum, eastern Mediterranean populations traditionally referred to as diploid A. odoratum were shown to be cytologically distinct, and may represent a new taxon. Autopolyploid origin was suggested for 4x A. alpinum. In contrast, 4x A. odoratum seems to be an allopolyploid, based on the amounts of nuclear DNA. Intraspecific variation in genome size was observed in all recognized species, the most striking example being the A. aristatum/ovatum complex. Altogether, our study showed that genome size can be a useful taxonomic marker in Anthoxathum to not only guide taxonomic decisions but also help resolve evolutionary relationships in this challenging grass genus. PMID:26207824

Salzmann's nodular degeneration of the cornea: a review and case series.

PubMed

Das, Sujata; Link, Barbara; Seitz, Berthold

2005-10-01

Salzmann's nodular degeneration is a rare, noninflammatory, slowly progressive, degenerative condition. Bluish-white nodules raised above the surface of the cornea characterize it. It has usually developed in corneas with a history of phlyctenulosis, trachoma, vernal keratoconjunctivitis, measles, scarlet fever, and various other viral diseases. However, today the majority of cases have been seen without recognized previous keratitis. It is composed of dense irregularly arranged collagen tissue with hyalinization between epithelium and Bowman's layer or beyond. Manual removal, phototherapeutic keratectomy (PTK) with or without the use of topical mitomycin-C, lamellar or penetrating keratoplasty have been used in the treatment of this disease. Salzmann's nodular degeneration does not seem to consist of one clinical entity. In some cases, elevated and pannus-like tissue can be separated easily from the corneal surface leaving Bowman's layer almost untouched. In these eyes, subsequent PTK may be necessary to smooth the surface. Recurrences are rare in these eyes. In contrast, some eyes (often with major peripheral vascularization) are left with deep defects in Bowman's layer and superficial stroma after difficult mechanical removal of nodules. In these eyes, multiple masking/laser ablation procedures are mandatory to acquire a homogenous surface. In our experience, the required laser ablation depth is significantly greater and the best-corrected visual acuity to be expected is reduced in contrast to the eyes with easy removal of the nodules. In these eyes recurrences seem to occur more frequently after treatment. Of 35 eyes documented to have Salzmann's nodular degeneration during the last 15 years in our department, 22 needed PTK treatment. Visual acuity increased from 0.4 to 0.7 on average. As a routine, laser ablation should be combined with previous conventional removal of nodules and excessive pannus tissue. By doing so, lamellar and penetrating keratoplasty techniques are hardly ever required in those eyes.

Response of planktonic cladocerans (Class: Branchiopoda) to short-term changes in environmental variables in the surface waters of the Bay of Biscay

NASA Astrophysics Data System (ADS)

d'Elbée, Jean; Lalanne, Yann; Castège, Iker; Bru, Noelle; D'Amico, Frank

2014-08-01

From January 2001 to December 2008, 73 surface plankton samples and 45 vertical profiles of sea temperature, salinity, dissolved oxygen and pH were collected on a monthly basis from a single sampling station located in the Bay of Biscay (43°37N; 1°43W) (North-East Atlantic). Two types of North Atlantic Oscillation (NAO) indexes were included in the data set and submitted to a Canonical Correspondence Analysis and Spearman non-parametric test. Significant breaks and levels in time series were tested using a data segmentation method. The temperature range varies from 11 °C to 25 °C. It begins to rise from April until August and then decline. Low salinity values occur in mid-spring (<34 PSU) and high values (>36 PSU) in autumn. Dissolved oxygen mean values were around 8 mg/l. In summer, when temperature and salinity are high, surface water layer is always accompanied with a significant deoxygenation, and the process reverses in winter. pH mean values range was 7.78-8.33. Seasonal and inter-annual variations of the two NAO indexes are strongly correlated to one another, but do not correlate with any hydrological or biological variable. Five of the seven cladocerans species which are present in the Bay of Biscay were found in this study. There is a strong pattern in species succession throughout the year: Evadne nordmanni is a vernal species, while Penilia avirostris and Pseudevadne tergestina occur mainly in summer and autumn. Evadne spinifera has a maximum abundance in spring, Podon intermedius in autumn, but they both occur throughout the year. However, for some thirty years, the presence of species has tended to become significantly extended throughout the year. During the 2001-2008 period, there was a noticeable decline and even a disappearance of the categories involved in sexual reproduction as well as those involved in parthenogenesis, in favor of non-breeding individuals.

ARABIDOPSIS TRITHORAX-RELATED3/SET DOMAIN GROUP2 is Required for the Winter-Annual Habit of Arabidopsis thaliana

PubMed Central

Yun, Jae-Young; Tamada, Yosuke; Kang, Ye Eun; Amasino, Richard M.

2012-01-01

The winter-annual habit of Arabidopsis thaliana requires active alleles of FLOWERING LOCUS C (FLC), which encodes a potent flowering repressor, and FRIGIDA (FRI), an activator of FLC. FLC activation by FRI is accompanied by an increase in specific histone modifications, such as tri-methylation of histone H3 at lysine 4 (H3K4me3), and requires three H3K4 methyltransferases, the Drosophila Trithorax-class ARABIDOPSIS TRITHORAX1 (ATX1) and ATX2, and yeast Set1-class ATX-RELATED7/SET DOMAIN GROUP25 (ATXR7/SDG25). However, lesions in all of these genes failed to suppress the enhanced FLC expression caused by FRI completely, suggesting that another H3K4 methyltransferase may participate in the FLC activation. Here, we show that ATXR3/SDG2, which is a member of a novel class of H3K4 methyltransferases, also contributes to FLC activation. An ATXR3 lesion suppressed the enhanced FLC expression and delayed flowering caused by an active allele of FRI in non-vernalized plants. The decrease in FLC expression in atxr3 mutants was accompanied by reduced H3K4me3 levels at FLC chromatin. We also found that the rapid flowering of atxr3 was epistatic to that of atxr7, suggesting that ATXR3 functions in FLC activation in sequence with ATXR7. Our results indicate that the novel-class H3K4 methyltransferase, ATXR3, is a transcriptional activator that plays a role in the FLC activation and establishing the winter-annual habit. In addition, ATXR3 also contributes to the activation of other FLC clade members, such as FLOWERING LOCUS M/MADS AFFECTING FLOWERING1 (FLM/MAF1) and MAF5, at least partially explaining the ATXR3 function in delayed flowering caused by non-inductive photoperiods. PMID:22378382

Atmospheric Nitrogen Deposition Threatens Biodiversity: Development of Novel Mitigation Policies in California

NASA Astrophysics Data System (ADS)

Weiss, S. B.

2011-12-01

Atmospheric nitrogen deposition threatens biodiversity in many parts of the world. In California, 20% of the land surface receives > 5 kg-N ha-1 year-1, with hotspots receiving > 50 kg-N ha-1 year-1. Documented impacts of N-deposition include increased growth of annual grass and other invasives in coastal sage scrub, serpentine grasslands, vernal pools, and deserts, altered nutrient cycling and fuel accumulation of montane forests, enhanced fire cycles, nitrate leaching into surface and groundwater, and eutrophication of montane lakes such as Lake Tahoe. 40% of listed threatened and endangered plants are exposed to > 5 kg-N ha-1 year-1, and N-deposition is arguably a greater immediate threat to biodiversity than is climate change. Appropriate policy responses are lagging, because the magnitude of N-deposition impacts on biodiversity is poorly known in the broader conservation/regulatory community and the general public. Policies to decrease emissions and deposition are clearly the ultimate solution on a decadal time scale. In the interim, habitat management is critical to preventing extinction of many species. This presentation reviews recent policies and regulatory actions in California that address N-deposition impacts on biodiversity. The immediate and long-term needs for invasive weed management are overwhelming and require long-term endowment funding. Mitigation requirements under the US Endangered Species Act have been used to secure land and management resources. The on-going story of the threatened Bay checkerspot butterfly, from the first precedent setting mitigation in 2001 through a regional Habitat Conservation Plan (HCP), illustrates the development of these novel policies based on science, regulatory authority, grassroots activism, public education, habitat restoration, and legal actions. The 50-year HCP will ultimately result in a network of conserved lands with management endowments. Eventually N-deposition may be reduced below critical loads through other regulatory avenues. This model has potential to be applied to other endangered species in California and elsewhere in the world.

Quantification of Massive Seasonal Aggregations of Blacktip Sharks (Carcharhinus limbatus) in Southeast Florida

PubMed Central

Kajiura, Stephen M.; Tellman, Shari L.

2016-01-01

Southeast Florida witnesses an enormous seasonal influx of upper trophic level marine predators each year as massive aggregations of migrating blacktip sharks (Carcharhinus limbatus) overwinter in nearshore waters. The narrow shelf and close proximity of the Gulf Stream current to the Palm Beach County shoreline drive tens of thousands of sharks to the shallow, coastal environment. This natural bottleneck provides a unique opportunity to estimate relative abundance. Over a four year period from 2011–2014, an aerial survey was flown approximately biweekly along the length of Palm Beach County. A high definition video camera and digital still camera mounted out of the airplane window provided a continuous record of the belt transect which extended 200 m seaward from the shoreline between Boca Raton Inlet and Jupiter Inlet. The number of sharks within the survey transect was directly counted from the video. Shark abundance peaked in the winter (January-March) with a maximum in 2011 of 12,128 individuals counted within the 75.6 km-2 belt transect. This resulted in a maximum density of 803.2 sharks km-2. By the late spring (April-May), shark abundance had sharply declined to 1.1% of its peak, where it remained until spiking again in January of the following year. Shark abundance was inversely correlated with water temperature and large numbers of sharks were found only when water temperatures were less than 25°C. Shark abundance was also correlated with day of the year but not with barometric pressure. Although shark abundance was not correlated with photoperiod, the departure of the sharks from southeast Florida occurred around the vernal equinox. The shark migration along the United States eastern seaboard corresponds spatially and temporally with the spawning aggregations of various baitfish species. These baseline abundance data can be compared to future studies to determine if shark population size is changing and if sharks are restricting their southward migration as global water temperatures increase. PMID:27027502

Quantification of Massive Seasonal Aggregations of Blacktip Sharks (Carcharhinus limbatus) in Southeast Florida.

PubMed

Kajiura, Stephen M; Tellman, Shari L

2016-01-01

Southeast Florida witnesses an enormous seasonal influx of upper trophic level marine predators each year as massive aggregations of migrating blacktip sharks (Carcharhinus limbatus) overwinter in nearshore waters. The narrow shelf and close proximity of the Gulf Stream current to the Palm Beach County shoreline drive tens of thousands of sharks to the shallow, coastal environment. This natural bottleneck provides a unique opportunity to estimate relative abundance. Over a four year period from 2011-2014, an aerial survey was flown approximately biweekly along the length of Palm Beach County. A high definition video camera and digital still camera mounted out of the airplane window provided a continuous record of the belt transect which extended 200 m seaward from the shoreline between Boca Raton Inlet and Jupiter Inlet. The number of sharks within the survey transect was directly counted from the video. Shark abundance peaked in the winter (January-March) with a maximum in 2011 of 12,128 individuals counted within the 75.6 km(-2) belt transect. This resulted in a maximum density of 803.2 sharks km(-2). By the late spring (April-May), shark abundance had sharply declined to 1.1% of its peak, where it remained until spiking again in January of the following year. Shark abundance was inversely correlated with water temperature and large numbers of sharks were found only when water temperatures were less than 25 °C. Shark abundance was also correlated with day of the year but not with barometric pressure. Although shark abundance was not correlated with photoperiod, the departure of the sharks from southeast Florida occurred around the vernal equinox. The shark migration along the United States eastern seaboard corresponds spatially and temporally with the spawning aggregations of various baitfish species. These baseline abundance data can be compared to future studies to determine if shark population size is changing and if sharks are restricting their southward migration as global water temperatures increase.

Surface layer and bloom dynamics observed with the Prince William Sound Autonomous Profiler

NASA Astrophysics Data System (ADS)

Campbell, R. W.

2016-02-01

As part of a recent long term monitoring effort, deployments of a WETLabs Autonomous Moored Profiler (AMP) began Prince William Sound (PWS) in 2013. The PWS AMP consists of a positively buoyant instrument frame, with a winch and associated electronics that profiles the frame from a park depth (usually 55 m) to the surface by releasing and retrieving a thin UHMWPE tether; it generally conducts a daily cast and measures temperature, salinity, chlorophyll-a fluorescence, turbidity, and oxygen and nitrate concentrations. Upward and downward looking ADCPs are mounted on a float below the profiler, and an in situ plankton imager is in development and will be installed in 2016. Autonomous profilers are a relatively new technology, and early deployments experienced a number of failures from which valuable lessons may be learned. Nevertheless, an unprecedented time series of the seasonal biogeochemical procession in the surface waters coastal Gulf of Alaska was collected in 2014 and 2015. The northern Gulf of Alaska has experienced a widespread warm anomaly since early 2014, and surface layer temperature anomalies in PWS were strongly positive during winter 2014. The spring bloom observed by the profiler began 2-3 weeks earlier than average, with surface nitrate depleted by late April. Although surface temperatures were still above average in 2015, bloom timing was much later, with a short vigorous bloom in late April and a subsurface bloom in late May that coincided with significant nitrate drawdown. As well as the vernal blooms, wind-driven upwelling events lead to several small productivity pulses that were evident in changes in nitrate and oxygen concentrations, and chlorophyll-a fluorescence. As well as providing a mechanistic understanding of surface layer biogeochemistry, high frequency observations such as these put historical observations in context, and provide new insights into the scales of variability in the annual cycles of the surface ocean in the North Pacific.

Snow in northeastern United States

NASA Image and Video Library

2014-03-11

Snow covered the northeastern United States on last day of meteorological winter, 2014. Climatologists and meteorologists break seasons down into three-month groups, based on annual temperature and our calendar. This method is helpful for weather observing and forecasting, and for planning consistent agricultural dates, such as expected first frosts or best planting date. Meteorological winter – the season where temperatures are, on average, coldest and when snow is most likely to fall – runs from December 1 to February 28 in the United States and Canada. Winter can also be defined by the astronomical calendar, which is based on the rotation of the Earth around the sun. In this method, the seasons are defined by two solstices (times when the sun’s path is furthest from the Earth’s equator) and two equinoxes (the times when the sun passes directly above the equator). In the Northern Hemisphere, winter begins on the winter solstice, which falls on or around December 22 and ends on or around March 21, at the vernal (spring) equinox. On February 28, 2014, the Moderate Resolution Imaging Spectroradiometer aboard NASA’s Aqua satellite captured this true-color image of a sunny winter day in the northeastern United States. Snow stretches from Maine west to Indiana and south along the ridges of the Appalachian Mountains well into West Virginia. In Canada, the landscape appears greener, primarily because snow lies on conifers (evergreen) trees in the boreal forest regions. The Great Lakes, with the exception of Lake Ontario, are almost completely covered with ice. Credit: NASA/GSFC/Jeff Schmaltz/MODIS Land Rapid Response Team NASA image use policy. NASA Goddard Space Flight Center enables NASA’s mission through four scientific endeavors: Earth Science, Heliophysics, Solar System Exploration, and Astrophysics. Goddard plays a leading role in NASA’s accomplishments by contributing compelling scientific knowledge to advance the Agency’s mission. Follow us on Twitter Like us on Facebook Find us on Instagram

Estimating occupancy dynamics for large-scale monitoring networks: amphibian breeding occupancy across protected areas in the northeast United States

USGS Publications Warehouse

Miller, David A.W.; Grant, Evan H. Campbell

2015-01-01

Regional monitoring strategies frequently employ a nested sampling design where a finite set of study areas from throughout a region are selected within which intensive sub-sampling occurs. This sampling protocol naturally lends itself to a hierarchical analysis to account for dependence among sub-samples. Implementing such an analysis within a classic likelihood framework is computationally prohibitive with species occurrence data when accounting for detection probabilities. Bayesian methods offer an alternative framework to make this analysis feasible. We demonstrate a general approach for estimating occupancy when data come from a nested sampling design. Using data from a regional monitoring program of wood frogs (Lithobates sylvaticus) and spotted salamanders (Ambystoma maculatum) in vernal pools, we analyzed data using static and dynamic occupancy frameworks. We analyzed observations from 2004-2013collected within 14 protected areas located throughout the northeast United States . We use the data set to estimate trends in occupancy at both the regional and individual protected area level. We show that occupancy at the regional level was relatively stable for both species. Much more variation occurred within individual study areas, with some populations declining and some increasing for both species. We found some evidence for a latitudinal gradient in trends among protected areas. However, support for this pattern is overestimated when the hierarchical nature of the data collection is not controlled for in the analysis. For both species, occupancy appeared to be declining in the most southern areas, while occupancy was stable or increasing in more northern areas. These results shed light on the range-level population status of these pond-breeding amphibians and our approach provides a framework that can be used to examine drivers of change including among-year and among-site variation in occurrence dynamics, while properly accounting for nested structure of data collection.

Quantification of the effects of VRN1 and Ppd-D1 to predict spring wheat (Triticum aestivum) heading time across diverse environments

PubMed Central

Zheng, Bangyou; Biddulph, Ben; Li, Dora; Kuchel, Haydn; Chapman, Scott

2013-01-01

Heading time is a major determinant of the adaptation of wheat to different environments, and is critical in minimizing risks of frost, heat, and drought on reproductive development. Given that major developmental genes are known in wheat, a process-based model, APSIM, was modified to incorporate gene effects into estimation of heading time, while minimizing degradation in the predictive capability of the model. Model parameters describing environment responses were replaced with functions of the number of winter and photoperiod (PPD)-sensitive alleles at the three VRN1 loci and the Ppd-D1 locus, respectively. Two years of vernalization and PPD trials of 210 lines (spring wheats) at a single location were used to estimate the effects of the VRN1 and Ppd-D1 alleles, with validation against 190 trials (~4400 observations) across the Australian wheatbelt. Compared with spring genotypes, winter genotypes for Vrn-A1 (i.e. with two winter alleles) had a delay of 76.8 degree days (°Cd) in time to heading, which was double the effect of the Vrn-B1 or Vrn-D1 winter genotypes. Of the three VRN1 loci, winter alleles at Vrn-B1 had the strongest interaction with PPD, delaying heading time by 99.0 °Cd under long days. The gene-based model had root mean square error of 3.2 and 4.3 d for calibration and validation datasets, respectively. Virtual genotypes were created to examine heading time in comparison with frost and heat events and showed that new longer-season varieties could be heading later (with potential increased yield) when sown early in season. This gene-based model allows breeders to consider how to target gene combinations to current and future production environments using parameters determined from a small set of phenotyping treatments. PMID:23873997

Quantification of the effects of VRN1 and Ppd-D1 to predict spring wheat (Triticum aestivum) heading time across diverse environments.

PubMed

Zheng, Bangyou; Biddulph, Ben; Li, Dora; Kuchel, Haydn; Chapman, Scott

2013-09-01

Heading time is a major determinant of the adaptation of wheat to different environments, and is critical in minimizing risks of frost, heat, and drought on reproductive development. Given that major developmental genes are known in wheat, a process-based model, APSIM, was modified to incorporate gene effects into estimation of heading time, while minimizing degradation in the predictive capability of the model. Model parameters describing environment responses were replaced with functions of the number of winter and photoperiod (PPD)-sensitive alleles at the three VRN1 loci and the Ppd-D1 locus, respectively. Two years of vernalization and PPD trials of 210 lines (spring wheats) at a single location were used to estimate the effects of the VRN1 and Ppd-D1 alleles, with validation against 190 trials (~4400 observations) across the Australian wheatbelt. Compared with spring genotypes, winter genotypes for Vrn-A1 (i.e. with two winter alleles) had a delay of 76.8 degree days (°Cd) in time to heading, which was double the effect of the Vrn-B1 or Vrn-D1 winter genotypes. Of the three VRN1 loci, winter alleles at Vrn-B1 had the strongest interaction with PPD, delaying heading time by 99.0 °Cd under long days. The gene-based model had root mean square error of 3.2 and 4.3 d for calibration and validation datasets, respectively. Virtual genotypes were created to examine heading time in comparison with frost and heat events and showed that new longer-season varieties could be heading later (with potential increased yield) when sown early in season. This gene-based model allows breeders to consider how to target gene combinations to current and future production environments using parameters determined from a small set of phenotyping treatments.

Evolutionary and Taxonomic Implications of Variation in Nuclear Genome Size: Lesson from the Grass Genus Anthoxanthum (Poaceae).

PubMed

Chumová, Zuzana; Krejčíková, Jana; Mandáková, Terezie; Suda, Jan; Trávníček, Pavel

2015-01-01

The genus Anthoxanthum (sweet vernal grass, Poaceae) represents a taxonomically intricate polyploid complex with large phenotypic variation and its evolutionary relationships still poorly resolved. In order to get insight into the geographic distribution of ploidy levels and assess the taxonomic value of genome size data, we determined C- and Cx-values in 628 plants representing all currently recognized European species collected from 197 populations in 29 European countries. The flow cytometric estimates were supplemented by conventional chromosome counts. In addition to diploids, we found two low (rare 3x and common 4x) and one high (~16x-18x) polyploid levels. Mean holoploid genome sizes ranged from 5.52 pg in diploid A. alpinum to 44.75 pg in highly polyploid A. amarum, while the size of monoploid genomes ranged from 2.75 pg in tetraploid A. alpinum to 9.19 pg in diploid A. gracile. In contrast to Central and Northern Europe, which harboured only limited cytological variation, a much more complex pattern of genome sizes was revealed in the Mediterranean, particularly in Corsica. Eight taxonomic groups that partly corresponded to traditionally recognized species were delimited based on genome size values and phenotypic variation. Whereas our data supported the merger of A. aristatum and A. ovatum, eastern Mediterranean populations traditionally referred to as diploid A. odoratum were shown to be cytologically distinct, and may represent a new taxon. Autopolyploid origin was suggested for 4x A. alpinum. In contrast, 4x A. odoratum seems to be an allopolyploid, based on the amounts of nuclear DNA. Intraspecific variation in genome size was observed in all recognized species, the most striking example being the A. aristatum/ovatum complex. Altogether, our study showed that genome size can be a useful taxonomic marker in Anthoxathum to not only guide taxonomic decisions but also help resolve evolutionary relationships in this challenging grass genus.

Nitrogen Limitation of Pond Ecosystems on the Plains of Eastern Colorado

PubMed Central

Mischler, John A.; Taylor, Philip G.; Townsend, Alan R.

2014-01-01

Primary production in freshwater ecosystems is often limited by the availability of phosphorus (P), nitrogen (N), or a combination of both (NP co-limitation). While N fixation via heterocystous cyanobacteria can supply additional N, no comparable mechanism for P exists; hence P is commonly considered to be the predominant and ultimate limiting nutrient in freshwater ecosystems. However, N limitation can be maintained if P is supplied in stoichiometric excess of N (including N fixation). The main objective of this study was to examine patterns in nutrient limitation across a series of 21 vernal ponds in Eastern Colorado where high P fluxes are common. Across all ponds, water column dissolved inorganic N steadily decreased throughout the growth season due to biological demand while total dissolved P remained stable. The water column dissolved inorganic N to total dissolved P ratios suggested a transition from NP co-limitation to N limitation across the growth season. Periphyton and phytoplankton %C was strongly correlated with %N while %P was assimilated in excess of %N and %C in many ponds. Similarly, in nutrient addition bottle assays algae responded more strongly to N additions (11 out of 18 water bodies) than P additions (2 out of 18 water bodies) and responded most strongly when N and P were added in concert (12 out of 18 water bodies). Of the ponds that responded to nutrient addition, 92% exhibited some sort of N limitation while less than 8% were limited by P alone. Despite multiple lines of evidence for N limitation or NP co-limitation, N fixation rates were uniformly low across most ponds, most likely due to inhibition by water column nitrate. Within this set of 18 water bodies, N limitation or NP co-limitation is widespread due to the combination high anthropogenic P inputs and constrained N fixation rates. PMID:24824838

Comparative analysis of the cold acclimation and freezing tolerance capacities of seven diploid Brachypodium distachyon accessions

PubMed Central

Colton-Gagnon, Katia; Ali-Benali, Mohamed Ali; Mayer, Boris F.; Dionne, Rachel; Bertrand, Annick; Do Carmo, Sonia; Charron, Jean-Benoit

2014-01-01

Background and Aims Cold is a major constraint for cereal cultivation under temperate climates. Winter-hardy plants interpret seasonal changes and can acquire the ability to resist sub-zero temperatures. This cold acclimation process is associated with physiological, biochemical and molecular alterations in cereals. Brachypodium distachyon is considered a powerful model system to study the response of temperate cereals to adverse environmental conditions. To date, little is known about the cold acclimation and freezing tolerance capacities of Brachypodium. The main objective of this study was to evaluate the cold hardiness of seven diploid Brachypodium accessions. Methods An integrated approach, involving monitoring of phenological indicators along with expression profiling of the major vernalization regulator VRN1 orthologue, was followed. In parallel, soluble sugars and proline contents were determined along with expression profiles of two COR genes in plants exposed to low temperatures. Finally, whole-plant freezing tests were performed to evaluate the freezing tolerance capacity of Brachypodium. Key Results Cold treatment accelerated the transition from the vegetative to the reproductive phase in all diploid Brachypodium accessions tested. In addition, low temperature exposure triggered the gradual accumulation of BradiVRN1 transcripts in all accessions tested. These accessions exhibited a clear cold acclimation response by progressively accumulating proline, sugars and COR gene transcripts. However, whole-plant freezing tests revealed that these seven diploid accessions only have a limited capacity to develop freezing tolerance when compared with winter varieties of temperate cereals such as wheat and barley. Furthermore, little difference in terms of survival was observed among the accessions tested despite their previous classification as either spring or winter genotypes. Conclusions This study is the first to characterize the freezing tolerance capacities of B. distachyon and provides strong evidence that some diploid accessions such as Bd21 have a facultative growth habit. PMID:24323247

Quantification of massive seasonal aggregations of blacktip sharks ( Carcharhinus limbatus) in Southeast Florida

DOE PAGES

Kajiura, Stephen M.; Tellman, Shari L.; Patterson, Heather M.

2016-03-30

Southeast Florida witnesses an enormous seasonal influx of upper trophic level marine predators each year as massive aggregations of migrating blacktip sharks ( Carcharhinus limbatus) overwinter in nearshore waters. The narrow shelf and close proximity of the Gulf Stream current to the Palm Beach County shoreline drive tens of thousands of sharks to the shallow, coastal environment. This natural bottleneck provides a unique opportunity to estimate relative abundance. Over a four year period from 2011–2014, an aerial survey was flown approximately biweekly along the length of Palm Beach County. A high definition video camera and digital still camera mounted outmore » of the airplane window provided a continuous record of the belt transect which extended 200 m seaward from the shoreline between Boca Raton Inlet and Jupiter Inlet. The number of sharks within the survey transect was directly counted from the video. Shark abundance peaked in the winter (January-March) with a maximum in 2011 of 12,128 individuals counted within the 75.6 km -2 belt transect. This resulted in a maximum density of 803.2 sharks km -2. By the late spring (April-May), shark abundance had sharply declined to 1.1% of its peak, where it remained until spiking again in January of the following year. Shark abundance was inversely correlated with water temperature and large numbers of sharks were found only when water temperatures were less than 25°C. Shark abundance was also correlated with day of the year but not with barometric pressure. Although shark abundance was not correlated with photoperiod, the departure of the sharks from southeast Florida occurred around the vernal equinox. The shark migration along the United States eastern seaboard corresponds spatially and temporally with the spawning aggregations of various baitfish species. As a result, these baseline abundance data can be compared to future studies to determine if shark population size is changing and if sharks are restricting their southward migration as global water temperatures increase.« less

Delimitation of the Earliness per se D1 (Eps-D1) flowering gene to a subtelomeric chromosomal deletion in bread wheat (Triticum aestivum).

PubMed

Zikhali, Meluleki; Wingen, Luzie U; Griffiths, Simon

2016-01-01

Earliness per se (Eps) genes account for the variation in flowering time when vernalization and photoperiod requirements are satisfied. Genomics and bioinformatics approaches were used to describe allelic variation for 40 Triticum aestivum genes predicted, by synteny with Brachypodium distachyon, to be in the 1DL Eps region. Re-sequencing 1DL genes revealed that varieties carrying early heading alleles at this locus, Spark and Cadenza, carry a subtelomeric deletion including several genes. The equivalent region in Rialto and Avalon is intact. A bimodal distribution in the segregating Spark X Rialto single seed descent (SSD) populations enabled the 1DL QTL to be defined as a discrete Mendelian factor, which we named Eps-D1. Near isogenic lines (NILs) and NIL derived key recombinants between markers flanking Eps-D1 suggest that the 1DL deletion contains the gene(s) underlying Eps-D1. The deletion spans the equivalent of the Triticum monoccocum Eps-A (m) 1 locus, and hence includes MODIFIER OF TRANSCRIPTION 1 (MOT1) and FTSH PROTEASE 4 (FTSH4), the candidates for Eps-A (m) 1. The deletion also contains T. aestivum EARLY FLOWERING 3-D1 (TaELF3-D1) a homologue of the Arabidopsis thaliana circadian clock gene EARLY FLOWERING 3. Eps-D1 is possibly a homologue of Eps-B1 on chromosome 1BL. NILs carrying the Eps-D1 deletion have significantly reduced total TaELF3 expression and altered TaGIGANTEA (TaGI) expression compared with wild type. Altered TaGI expression is consistent with an ELF3 mutant, hence we propose TaELF3-D1 as the more likely candidate for Eps-D1. This is the first direct fine mapping of Eps effect in bread wheat. © The Author 2015. Published by Oxford University Press on behalf of the Society for Experimental Biology.

Quantification of massive seasonal aggregations of blacktip sharks ( Carcharhinus limbatus) in Southeast Florida

DOE Office of Scientific and Technical Information (OSTI.GOV)

Kajiura, Stephen M.; Tellman, Shari L.; Patterson, Heather M.

Southeast Florida witnesses an enormous seasonal influx of upper trophic level marine predators each year as massive aggregations of migrating blacktip sharks ( Carcharhinus limbatus) overwinter in nearshore waters. The narrow shelf and close proximity of the Gulf Stream current to the Palm Beach County shoreline drive tens of thousands of sharks to the shallow, coastal environment. This natural bottleneck provides a unique opportunity to estimate relative abundance. Over a four year period from 2011–2014, an aerial survey was flown approximately biweekly along the length of Palm Beach County. A high definition video camera and digital still camera mounted outmore » of the airplane window provided a continuous record of the belt transect which extended 200 m seaward from the shoreline between Boca Raton Inlet and Jupiter Inlet. The number of sharks within the survey transect was directly counted from the video. Shark abundance peaked in the winter (January-March) with a maximum in 2011 of 12,128 individuals counted within the 75.6 km -2 belt transect. This resulted in a maximum density of 803.2 sharks km -2. By the late spring (April-May), shark abundance had sharply declined to 1.1% of its peak, where it remained until spiking again in January of the following year. Shark abundance was inversely correlated with water temperature and large numbers of sharks were found only when water temperatures were less than 25°C. Shark abundance was also correlated with day of the year but not with barometric pressure. Although shark abundance was not correlated with photoperiod, the departure of the sharks from southeast Florida occurred around the vernal equinox. The shark migration along the United States eastern seaboard corresponds spatially and temporally with the spawning aggregations of various baitfish species. As a result, these baseline abundance data can be compared to future studies to determine if shark population size is changing and if sharks are restricting their southward migration as global water temperatures increase.« less

Winter severity determines functional trait composition of phytoplankton in seasonally ice-covered lakes.

PubMed

Özkundakci, Deniz; Gsell, Alena S; Hintze, Thomas; Täuscher, Helgard; Adrian, Rita

2016-01-01

How climate change will affect the community dynamics and functionality of lake ecosystems during winter is still little understood. This is also true for phytoplankton in seasonally ice-covered temperate lakes which are particularly vulnerable to the presence or absence of ice. We examined changes in pelagic phytoplankton winter community structure in a north temperate lake (Müggelsee, Germany), covering 18 winters between 1995 and 2013. We tested how phytoplankton taxa composition varied along a winter-severity gradient and to what extent winter severity shaped the functional trait composition of overwintering phytoplankton communities using multivariate statistical analyses and a functional trait-based approach. We hypothesized that overwintering phytoplankton communities are dominated by taxa with trait combinations corresponding to the prevailing winter water column conditions, using ice thickness measurements as a winter-severity indicator. Winter severity had little effect on univariate diversity indicators (taxon richness and evenness), but a strong relationship was found between the phytoplankton community structure and winter severity when taxon trait identity was taken into account. Species responses to winter severity were mediated by the key functional traits: motility, nutritional mode, and the ability to form resting stages. Accordingly, one or the other of two functional groups dominated the phytoplankton biomass during mild winters (i.e., thin or no ice cover; phototrophic taxa) or severe winters (i.e., thick ice cover; exclusively motile taxa). Based on predicted milder winters for temperate regions and a reduction in ice-cover durations, phytoplankton communities during winter can be expected to comprise taxa that have a relative advantage when the water column is well mixed (i.e., need not be motile) and light is less limiting (i.e., need not be mixotrophic). A potential implication of this result is that winter severity promotes different communities at the vernal equinox, which may have different nutritional quality for the next trophic level and ecosystem-scale effects. © 2015 John Wiley & Sons Ltd.

Seasonal Variation and Impact of Waste-Water Lagoons as Larval Habitat on the Population Dynamics of Culicoides sonorensis (Diptera:Ceratpogonidae) at Two Dairy Farms in Northern California

PubMed Central

Mayo, Christie E.; Osborne, Cameron J.; Mullens, Bradley A.; Gerry, Alec C.; Gardner, Ian A.; Reisen, William K.; Barker, Christopher M.; MacLachlan, N. James

2014-01-01

The Sacramento (northern Central) Valley of California (CA) has a hot Mediterranean climate and a diverse ecological landscape that is impacted extensively by human activities, which include the intensive farming of crops and livestock. Waste-water ponds, marshes, and irrigated fields associated with these agricultural activities provide abundant larval habitats for C. sonorensis midges, in addition to those sites that exist in the natural environment. Within this region, C. sonorensis is an important vector of bluetongue (BTV) and related viruses that adversely affect the international trade and movement of livestock, the economics of livestock production, and animal welfare. To characterize the seasonal dynamics of immature and adult C. sonorensis populations, abundance was monitored intensively on two dairy farms in the Sacramento Valley from August 2012– to July 2013. Adults were sampled every two weeks for 52 weeks by trapping (CDC style traps without light and baited with dry-ice) along N-S and E-W transects on each farm. One farm had large operational waste-water lagoons, whereas the lagoon on the other farm was drained and remained dry during the study. Spring emergence and seasonal abundance of adult C. sonorensis on both farms coincided with rising vernal temperature. Paradoxically, the abundance of midges on the farm without a functioning waste-water lagoon was increased as compared to abundance on the farm with a waste-water lagoon system, indicating that this infrastructure may not serve as the sole, or even the primary larval habitat. Adult midges disappeared from both farms from late November until May; however, low numbers of parous female midges were detected in traps set during daylight in the inter-seasonal winter period. This latter finding is especially critical as it provides a potential mechanism for the “overwintering” of BTV in temperate regions such as northern CA. Precise documentation of temporal changes in the annual abundance and dispersal of Culicoides midges is essential for the creation of models to predict BTV infection of livestock and to develop sound abatement strategies. PMID:24586925

High-altitude searches for vulcanoids: Observations from F/A-18B aircraft

NASA Astrophysics Data System (ADS)

Durda, D. D.; Stern, S. A.

2003-05-01

We have conducted a high-altitude observing campaign to search for vulcanoids, a population of small, asteroid-like bodies hypothesized to reside in the dynamically stable region interior to Mercury's orbit (i.e., orbits with aphelia <0.21 AU). This airborne search campaign utilized our versatile and highly capable SWUIS-A (Southwest Universal Imaging System - Airborne) instrument flown with SwRI flight astronomers to an altitude of 49,000 ft MSL aboard NASA F/A-18B aircraft in order to obtain darker twilight conditions for near-Sun observing than are possible from the ground. The first observing run (3 nights) was successfully completed at NASA's Dryden Flight Research Center during the March/April 2002 vernal equinox observing opportunity; the second observing run (3 nights) was completed during the September 2002 autumnal equinox observing opportunity. On each of the three evening and three morning twilight flights we recorded image data covering 250 square degrees of sky centered on the ecliptic from solar elongations of 6-18 deg. Reduction of the Mar/Apr and Sep 2002 data sets demonstrates that we are reliably detecting objects to magnitude V = 9.5-11 at 15-20 degrees solar elongation. This is significantly fainter than the instrument would have performed from the ground and comparable to the faintest stars visible in our space-based SOHO LASCO C3 coronagraph vulcanoids search (Durda et al. 2000; Icarus 148, 312-315). The SWUIS-A instrument itself is capable of imaging objects as faint as magnitude V = 13, corresponding to vulcanoids less than 10 km across, with a sufficiently dark sky background. For reference, V = 10 corresponds to a 18-km diameter object 1 AU from Earth and 0.15 AU from the sun with a Mercury-like geometric albedo of 14%. No vulcanoid candidates have been detected in the 49,000-ft altitude airborne observations to date. We thank NASA research pilots Rick Searfoss, Frank Batteas, Craig Bomben, and Dana Purifoy. This research is supported by the NASA Planetary Astronomy program, NASA's Dryden Flight Research Center, and the National Geographic Society.

Functional alleles of the flowering time regulator FRIGIDA in the Brassica oleracea genome

PubMed Central

2012-01-01

Background Plants adopt different reproductive strategies as an adaptation to growth in a range of climates. In Arabidopsis thaliana FRIGIDA (FRI) confers a vernalization requirement and thus winter annual habit by increasing the expression of the MADS box transcriptional repressor FLOWERING LOCUS C (FLC). Variation at FRI plays a major role in A. thaliana life history strategy, as independent loss-of-function alleles that result in a rapid-cycling habit in different accessions, appear to have evolved many times. The aim of this study was to identify and characterize orthologues of FRI in Brassica oleracea. Results We describe the characterization of FRI from Brassica oleracea and identify the two B. oleracea FRI orthologues (BolC.FRI.a and BolC.FRI.b). These show extensive amino acid conservation in the central and C-terminal regions to FRI from other Brassicaceae, including A. thaliana, but have a diverged N-terminus. The genes map to two of the three regions of B. oleracea chromosomes syntenic to part of A. thaliana chromosome 5 suggesting that one of the FRI copies has been lost since the ancient triplication event that formed the B. oleracea genome. This genomic position is not syntenic with FRI in A. thaliana and comparative analysis revealed a recombination event within the A. thaliana FRI promoter. This relocated A. thaliana FRI to chromosome 4, very close to the nucleolar organizer region, leaving a fragment of FRI in the syntenic location on A. thaliana chromosome 5. Our data show this rearrangement occurred after the divergence from A. lyrata. We explored the allelic variation at BolC.FRI.a within cultivated B. oleracea germplasm and identified two major alleles, which appear equally functional both to each other and A. thaliana FRI, when expressed as fusions in A. thaliana. Conclusions We identify the two Brassica oleracea FRI genes, one of which we show through A. thaliana complementation experiments is functional, and show their genomic location is not syntenic with A. thaliana FRI due to an ancient recombination event. This has complicated previous association analyses of FRI with variation in life history strategy in the Brassica genus. PMID:22333192

Building a Genetic Manipulation Tool Box for Orchid Biology: Identification of Constitutive Promoters and Application of CRISPR/Cas9 in the Orchid, Dendrobium officinale

PubMed Central

Kui, Ling; Chen, Haitao; Zhang, Weixiong; He, Simei; Xiong, Zijun; Zhang, Yesheng; Yan, Liang; Zhong, Chaofang; He, Fengmei; Chen, Junwen; Zeng, Peng; Zhang, Guanghui; Yang, Shengchao; Dong, Yang; Wang, Wen; Cai, Jing

2017-01-01

Orchidaceae is the second largest family of flowering plants, which is highly valued for its ornamental purposes and medicinal uses. Dendrobium officinale is a special orchid species that can grow without seed vernalization. Because the whole-genome sequence of D. officinale is publicly available, this species is poised to become a convenient research model for the evolutionary, developmental, and genetic studies of Orchidaceae. Despite these advantages, the methods of genetic manipulation are poorly developed in D. officinale. In this study, based on the previously developed Agrobacterium-mediated gene transformation system, we identified several highly efficient promoters for exogenous gene expression and successfully applied the CRISPR/Cas9 system for editing endogenous genes in the genome of D. officinale. These two basic techniques contribute to the genetic manipulation toolbox of Orchidaceae. The pCambia-1301-35SN vector containing the CaMV 35S promoter and the β-glucuronidase (GUS) and Superfolder green fluorescence protein (SG) as reporter genes were introduced into the plant tissues by the Agrobacterium-mediated transformation system. Fluorescence emission from the transformed plants confirmed the successful transcription and translation of SG genes into functional proteins. We compared the GUS activity under different promoters including four commonly used promoters (MtHP, CVMV, MMV and PCISV) with CaMV 35S promoter and found that MMV, CVMV, and PCISV were as effective as the 35S promoter. Furthermore, we applied the CRISPR/Cas9-mediated genome editing system successfully in D. officinale. By selecting five target genes (C3H, C4H, 4CL, CCR, and IRX) in the lignocellulose biosynthesis pathway, we showed that, for a given target, this system can generate edits (insertions, deletions, or substitutions) at a rate of 10 to 100%. These results showed that our two genetic manipulation tools can efficiently express exogenous genes and edit endogenous genes in D. officinale. These efficient research tools will not only help create novel D. officinale varieties, but will also facilitate the molecular genetic investigation of orchid biology. PMID:28127299

Dosage-Sensitive Function of RETINOBLASTOMA RELATED and Convergent Epigenetic Control Are Required during the Arabidopsis Life Cycle

PubMed Central

Johnston, Amal J.; Kirioukhova, Olga; Barrell, Philippa J.; Rutten, Twan; Moore, James M.; Baskar, Ramamurthy; Grossniklaus, Ueli; Gruissem, Wilhelm

2010-01-01

The plant life cycle alternates between two distinct multi-cellular generations, the reduced gametophytes and the dominant sporophyte. Little is known about how generation-specific cell fate, differentiation, and development are controlled by the core regulators of the cell cycle. In Arabidopsis, RETINOBLASTOMA RELATED (RBR), an evolutionarily ancient cell cycle regulator, controls cell proliferation, differentiation, and regulation of a subset of Polycomb Repressive Complex 2 (PRC2) genes and METHYLTRANSFERASE 1 (MET1) in the male and female gametophytes, as well as cell fate establishment in the male gametophyte. Here we demonstrate that RBR is also essential for cell fate determination in the female gametophyte, as revealed by loss of cell-specific marker expression in all the gametophytic cells that lack RBR. Maintenance of genome integrity also requires RBR, because diploid plants heterozygous for rbr (rbr/RBR) produce an abnormal portion of triploid offspring, likely due to gametic genome duplication. While the sporophyte of the diploid mutant plants phenocopied wild type due to the haplosufficiency of RBR, genetic analysis of tetraploid plants triplex for rbr (rbr/rbr/rbr/RBR) revealed that RBR has a dosage-dependent pleiotropic effect on sporophytic development, trichome differentiation, and regulation of PRC2 subunit genes CURLY LEAF (CLF) and VERNALIZATION 2 (VRN2), and MET1 in leaves. There were, however, no obvious cell cycle and cell proliferation defects in these plant tissues, suggesting that a single functional RBR copy in tetraploids is capable of maintaining normal cell division but is not sufficient for distinct differentiation and developmental processes. Conversely, in leaves of mutants in sporophytic PRC2 subunits, trichome differentiation was also affected and expression of RBR and MET1 was reduced, providing evidence for a RBR-PRC2-MET1 regulatory feedback loop involved in sporophyte development. Together, dosage-sensitive RBR function and its genetic interaction with PRC2 genes and MET1 must have been recruited during plant evolution to control distinct generation-specific cell fate, differentiation, and development. PMID:20585548

Making Intercontinental Burning Influences Quantitative: Lessons on Transport and Geochemistry From the 3-D Simulation of CO in PEM-T A and TRACE-A

NASA Technical Reports Server (NTRS)

Chatfield, Robert; Houben, Howard; Sachse, Glenn; Hipskind, R. Stephen (Technical Monitor)

1998-01-01

We report on two aspects of the simulation of global transport of plumes originating from subtropical biomass fires. We use of meteorological assimilation (MM5) at 2-degree resolution with a Grail cloud parameterization and a Blackadar-based planetary boundary layer parameterization. Ames's GRACES model provides emissions, transport, and an appropriate level of simulated chemical transformation. We have worked with passive-tracer CO or linear chemistry. This is appropriate since we find major work to be done in evaluating CO source strengths and transport mechanisms before chemical integrations could be meaningful. First, we present mechanisms by which CO and other pollutants are introduced into the free troposphere, and are then transported with hate dilution from approx. 0 to approx. 180 degrees longitude. One principal conduit for these plumes is the vernal subtropical jet; however the plumes appear at various altitudes and latitudes as they influenced by frontal motions and (most likely) radiative processes. A common, repeated pattern of transport has pollutant plumes arriving in the distant Pacific Ocean from Africa and South America at 25 degrees south and 14 km altitude. Following this, there is then a general appearance of pollution at extending down to 5 kin at more equatorial (10 S) and polar latitudes (to 45 S). Second, we evaluate the quantitative success of our simulation. (Such success requires efforts considerably beyond trajectory analyses, and is necessary for our community to claim an understanding of the effects of biomass burning on global atmospheric chemistry and the planet's trend in oxidizing capacity.) We find that we simulate most pollution episodes sampled by Glenn Sachse's CO instrument and the Blake hydrocarbon analyses during PENT A. We will present our current ideas on why our general levels appear satisfactory when the observations are within 20 ppb of background levels, but substantially miss the variability associated with the most intense biomass burning plumes. As time allows, we will speculate on the origins of a class of plumes that appear in the mid-troposphere, but are missing from our simulations.

Artificial asymmetric warming reduces nectar yield in a Tibetan alpine species of Asteraceae

PubMed Central

Mu, Junpeng; Peng, Youhong; Xi, Xinqiang; Wu, Xinwei; Li, Guoyong; Niklas, Karl J.; Sun, Shucun

2015-01-01

Background and Aims Asymmetric warming is one of the distinguishing features of global climate change, in which winter and night-time temperatures are predicted to increase more than summer and diurnal temperatures. Winter warming weakens vernalization and hence decreases the potential to flower for some perennial herbs, and night warming can reduce carbohydrate concentrations in storage organs. This study therefore hypothesized that asymmetric warming should act to reduce flower number and nectar production per flower in a perennial herb, Saussurea nigrescens, a key nectar plant for pollinators in Tibetan alpine meadows. Methods A long-term (6 years) warming experiment was conducted using open-top chambers placed in a natural meadow and manipulated to achieve asymmetric increases in temperature, as follows: a mean annual increase of 0·7 and 2·7 °C during the growing and non-growing seasons, respectively, combined with an increase of 1·6 and 2·8 °C in the daytime and night-time, respectively, from June to August. Measurements were taken of nectar volume and concentration (sucrose content), and also of leaf non-structural carbohydrate content and plant morphology. Key Results Six years of experimental warming resulted in reductions in nectar volume per floret (64·7 % of control), floret number per capitulum (8·7 %) and capitulum number per plant (32·5 %), whereas nectar concentration remained unchanged. Depletion of leaf non-structural carbohydrates was significantly higher in the warmed than in the ambient condition. Overall plant density was also reduced by warming, which, when combined with reductions in flower development and nectar volumes, led to a reduction of ∼90 % in nectar production per unit area. Conclusions The negative effect of asymmetric warming on nectar yields in S. nigrescens may be explained by a concomitant depletion of leaf non-structural carbohydrates. The results thus highlight a novel aspect of how climate change might affect plant–pollinator interactions and plant reproduction via induction of allocation shifts for plants growing in communities subject to asymmetric warming. PMID:25921787

Artificial asymmetric warming reduces nectar yield in a Tibetan alpine species of Asteraceae.

PubMed

Mu, Junpeng; Peng, Youhong; Xi, Xinqiang; Wu, Xinwei; Li, Guoyong; Niklas, Karl J; Sun, Shucun

2015-11-01

Asymmetric warming is one of the distinguishing features of global climate change, in which winter and night-time temperatures are predicted to increase more than summer and diurnal temperatures. Winter warming weakens vernalization and hence decreases the potential to flower for some perennial herbs, and night warming can reduce carbohydrate concentrations in storage organs. This study therefore hypothesized that asymmetric warming should act to reduce flower number and nectar production per flower in a perennial herb, Saussurea nigrescens, a key nectar plant for pollinators in Tibetan alpine meadows. A long-term (6 years) warming experiment was conducted using open-top chambers placed in a natural meadow and manipulated to achieve asymmetric increases in temperature, as follows: a mean annual increase of 0·7 and 2·7 °C during the growing and non-growing seasons, respectively, combined with an increase of 1·6 and 2·8 °C in the daytime and night-time, respectively, from June to August. Measurements were taken of nectar volume and concentration (sucrose content), and also of leaf non-structural carbohydrate content and plant morphology. Six years of experimental warming resulted in reductions in nectar volume per floret (64·7 % of control), floret number per capitulum (8·7 %) and capitulum number per plant (32·5 %), whereas nectar concentration remained unchanged. Depletion of leaf non-structural carbohydrates was significantly higher in the warmed than in the ambient condition. Overall plant density was also reduced by warming, which, when combined with reductions in flower development and nectar volumes, led to a reduction of ∼90 % in nectar production per unit area. The negative effect of asymmetric warming on nectar yields in S. nigrescens may be explained by a concomitant depletion of leaf non-structural carbohydrates. The results thus highlight a novel aspect of how climate change might affect plant-pollinator interactions and plant reproduction via induction of allocation shifts for plants growing in communities subject to asymmetric warming. © The Author 2015. Published by Oxford University Press on behalf of the Annals of Botany Company. All rights reserved. For Permissions, please email: journals.permissions@oup.com.

Biomarker signature of Greenland sediments: from modern rivers and soils to MIS 5e and 11 records

NASA Astrophysics Data System (ADS)

Lupker, M.; Anspach, J.; Haghipour, N.; Eglinton, T. I.

2016-12-01

Better constraining the evolution of the Greenland Ice Sheet (GrIS) is crucial for a broader understanding of past and future climate changes. Previous studies reported that the GrIS was significantly smaller during interglacial periods MIS 5e and MIS 11 than at present [1,2], which suggests that a bigger fraction of Greenland was covered by vegetation and soils. To investigate whether terrestrial biomarkers provide new constraints on the dynamics of the GrIS over the past interglacials, we characterised the biomarker composition (GDGTs and n-alkanes), as well as the bulk geochemistry (TOC, δ13C, C-14), of modern sediments from southwestern Greenland and of Eirik Drift core IODP-303-U1305 over MIS5e and 11. Rivers in southwestern Greenland constitute the main link between the Greenland Ice Sheet (GrIS) and the ocean. Understanding the composition of suspended river sediments gives insights into the source of organic carbon that is mobilised and further exported to the ocean. To address these questions, biomarkers in suspended sediments and soils coming from Kangerlussuaq, southwestern Greenland, were measured. Kangerlussuaq is located in the most sensitive region of Greenland with regard to climate change, and is a good analogue for interglacials. Preliminary results (e.g. biomarker concentrations, MAT, CPI, ACL) show that soils or lakes are not the only source of organic matter in these rivers, and suggest that part of the biomarker signature is inherited from older, presently subglacial, organic pools. The Eirik Drift accumulates material that is eroded from the eastern and southern Greenland margin, and it has been shown to record significant environmental changes of the GrIS over MIS 5e and MIS 11 [1,2,3]. However, the GDGT and n-alkane characterisation of drift sediments from IODP-303-U1305 do not show a significant response of the biomarker record to these interglacials. [1] Colville, E. J., et al., 2011 - Science 333, 620-623. [2] Reyes, A. V., et al., 2014 - Nature 510, 525-528. [3] de Vernal, A., & Hillaire-Marcel, C., 2008 - Science, 320 (5883), 1622-1625.

Glyphosate and AMPA in U.S. streams, groundwater, precipitation and soils

USGS Publications Warehouse

Battaglin, William A.; Meyer, Michael T.; Kuivila, Kathryn; Dietze, Julie E.

2014-01-01

Herbicides containing glyphosate are used in more than 130 countries on more than 100 crops. In the United States (U.S.), agricultural use of glyphosate [N-(phosphonomethyl)glycine] has increased from less than 10,000 metric tons per year (active ingredient) in 1993 to more than 70,000 metric tons per year in 2006. In 2006, glyphosate accounted for about 20 percent of all herbicide use (by weight of active ingredient). Glyphosate formulations such as Roundup® are used in homes and in agriculture. Part of the reason for the popularity of glyphosate is the perception that it is an “environmentally benign” herbicide that has low toxicity and little mobility or persistence in the environment. The U.S. Geological Survey developed an analytical method using liquid chromatography/tandem mass spectrometry that can detect small amounts of glyphosate and its primary degradation product aminomethylphosphonic acid (AMPA) in water and sediment. Results from more than 2,000 samples collected from locations distributed across the U.S. indicate that glyphosate is more mobile and occurs more widely in the environment than was previously thought. Glyphosate and AMPA were detected (reporting limits between 0.1 and 0.02 micrograms per liter) in samples collected from surface water, groundwater, rainfall, soil water, and soil, at concentrations from less than 0.1 to more than 100 micrograms per liter. Glyphosate was detected more frequently in rain (86%), ditches and drains (71%), and soil (63%); and less frequently in groundwater (3%) and large rivers (18%). AMPA was detected more frequently in rain (86%), soil (82%), and large rivers (78%); and less frequently in groundwater (8%) and wetlands or vernal pools (37%). Most observed concentrations of glyphosate were well below levels of concern for humans or wildlife, and none exceeded the U.S. Environmental Protection Agency’s Maximum Contaminant Level of 700 micrograms per liter. However, the ecosystem effects of chronic low-level exposures to mixtures of pesticides are uncertain, and some studies have attributed toxic effects on biota to the surfactants or other adjuvants that are included in common glyphosate formulations.

Seasonal variation in human reproduction: environmental factors.

PubMed

Bronson, F H

1995-06-01

Almost all human populations exhibit seasonal variation in births, owing mostly to seasonal variation in the frequency of conception. This review focuses on the degree to which environmental factors like nutrition, temperature and photoperiod contribute to these seasonal patterns by acting directly on the reproductive axis. The reproductive strategy of humans is basically that of the apes: Humans have the capacity to reproduce continuously, albeit slowly, unless inhibited by environmental influences. Two, and perhaps three, environmental factors probably act routinely as seasonal inhibitors in some human populations. First, it seems likely that ovulation is regulated seasonally in populations experiencing seasonal variation in food availability. More specifically, it seems likely that inadequate food intake or the increased energy expenditure required to obtain food, or both, can delay menarche, suppress the frequency of ovulation in the nonlactating adult, and prolong lactational amenorrhea in these populations on a seasonal basis. This action is most easily seen in tropical subsistence societies where food availability often varies greatly owing to seasonal variation in rainfall; hence births in these populations often correlate with rainfall. Second, it seems likely that seasonally high temperatures suppress spermatogenesis enough to influence the incidence of fertilization in hotter latitudes, but possibly only in males wearing clothing that diminishes scrotal cooling. Since most of our knowledge about this phenomenon comes from temperate latitudes, the sensitivity of spermatogenesis in both human and nonhuman primates to heat in the tropics needs further study. It is quite possible that high temperatures suppress ovulation and early embryo survival seasonally in some of these same populations. Since we know less than desired about the effect of heat stress on ovulation and early pregnancy in nonhuman mammals, and nothing at all about it in humans or any of the other primates, this is an important area for future research. Third, correlational data suggest that there may be some degree of regulation of reproduction by photoperiod in humans at middle to higher latitudes. Populations at these latitudes often show a peak in presumed conceptions associated with the vernal equinox. On the other hand, evidence gathered by neuroendocrinologists tends to argue against reproductive photoresponsiveness in humans.

Haplotype Variation of Flowering Time Genes of Sugar Beet and Its Wild Relatives and the Impact on Life Cycle Regimes.

PubMed

Höft, Nadine; Dally, Nadine; Hasler, Mario; Jung, Christian

2017-01-01

The species Beta vulgaris encompasses wild and cultivated members with a broad range of phenological development. The annual life cycle is commonly found in sea beets (ssp. maritima ) from Mediterranean environments which germinate, bolt, and flower within one season under long day conditions. Biennials such as the cultivated sugar beet ( B. vulgaris ssp. vulgaris ) as well as sea beets from northern latitudes require prolonged exposure to cold temperature over winter to acquire floral competence. Sugar beet is mainly cultivated for sugar production in Europe and is likely to have originated from sea beet. Flowering time strongly affects seed yield and yield potential and is thus a trait of high agronomic relevance. Besides environmental cues, there are complex genetic networks known to impact life cycle switch in flowering plants. In sugar beet, BTC1, BvBBX19, BvFT1 , and BvFT2 are major flowering time regulators. In this study, we phenotyped plants from a diversity Beta panel encompassing cultivated and wild species from different geographical origin. Plants were grown under different day length regimes with and without vernalization. Haplotype analysis of BTC1, BvBBX19, BvFT1 , and BvFT2 was performed to identify natural diversity of these genes and their impact on flowering. We found that accessions from northern latitudes flowered significantly later than those from southern latitudes. Some plants did not flower at all, indicating a strong impact of latitude of origin on life cycle. Haplotype analysis revealed a high conservation of the CCT-, REC-, BBX-, and PEBP-domains with regard to SNP occurrence. We identified sequence variation which may impact life cycle adaptation in beet. Our data endorse the importance of BTC1 in the domestication process of cultivated beets and contribute to the understanding of distribution and adaption of Beta species to different life cycle regimes in response to different environments. Moreover, our data provide a resource for haplotypes identified for the major floral regulators in beet.

Anterior segment and external ocular disorders associated with HIV infections in the era of HAART in Chiang Mai University Hospital, a prospective descriptive cross sectional study.

PubMed

Singalavanija, Tassapol; Ausayakhun, Somsanguan; Tangmonkongvoragul, Chulaluck

2018-01-01

Human immunodeficiency virus (HIV) causes impairment to the human immune system which leads to immunocompromised conditions, including ocular complications. Several important HIV-associated disorders may involve the anterior segment, ocular surface, and adnexae organ such as dry eye, blepharitis which reduce quality of life of patients. In present, potent antiretroviral therapies HAART (highly active antiretroviral therapy) has improved the length and quality of life which may lead to an increased prevalence of anterior segment ocular disorders. Hence, this study has been undertaken to identify the prevalence and associated factors of anterior segment and external ocular disorder in HIV infected patients in the era of HAART. A prospective descriptive cross sectional study was carried out in HIV positive patients conducted at the Department of Ophthalmology, Chiang Mai University Hospital, from February 2014 to October 2015. Detail history and ocular examination was carried out to examine for anterior segment and external ocular disorders. A total number of 363 patients were included for this prospective cross-sectional study. From the total of 363 patients, 123 patients had an anterior segment and external ocular disorder which account as the prevalence of 33.9%. The most common anterior segment manifestations was dry eye seen in 36 patients (9.9%), followed by posterior blepharitis (Meibomian gland dysfunction) seen in 23 patients (6.3%) and anterior blepharitis seen in 12 patients (3.3%). Other ocular complications included microvasculopathy, immune recovery uveitis, conjunctivitis, papilloma, anterior uveitis, corneal ulcer, nevus, trichiasis, molluscum contangiosum, Kaposi sarcoma, interstitial keratitis, conjunctival lymphangiectasia, dacryocystitis, vernal keratoconjunctivitis and eyelid penicilosis. In this study, the prevalance of anterior segment disorders was higher than in the preHAART era. Dry eye, blepharitis and uveitis were the top three most common anterior segment disorders in the HAART era. The statistical analysis showed no association between age, sex, CD4 count, duration of infection or receiving HAART and anterior segment disorders. Anterior segment abnormalities reduce the quality of life of patients, so ophthalmologists have to be aware and complete ocular examination should be performed in all HIV infected patients.

Anterior segment and external ocular disorders associated with HIV infections in the era of HAART in Chiang Mai University Hospital, a prospective descriptive cross sectional study

PubMed Central

Ausayakhun, Somsanguan

2018-01-01

Human immunodeficiency virus (HIV) causes impairment to the human immune system which leads to immunocompromised conditions, including ocular complications. Several important HIV-associated disorders may involve the anterior segment, ocular surface, and adnexae organ such as dry eye, blepharitis which reduce quality of life of patients. In present, potent antiretroviral therapies HAART (highly active antiretroviral therapy) has improved the length and quality of life which may lead to an increased prevalence of anterior segment ocular disorders. Hence, this study has been undertaken to identify the prevalence and associated factors of anterior segment and external ocular disorder in HIV infected patients in the era of HAART. A prospective descriptive cross sectional study was carried out in HIV positive patients conducted at the Department of Ophthalmology, Chiang Mai University Hospital, from February 2014 to October 2015. Detail history and ocular examination was carried out to examine for anterior segment and external ocular disorders. A total number of 363 patients were included for this prospective cross-sectional study. From the total of 363 patients, 123 patients had an anterior segment and external ocular disorder which account as the prevalence of 33.9%. The most common anterior segment manifestations was dry eye seen in 36 patients (9.9%), followed by posterior blepharitis (Meibomian gland dysfunction) seen in 23 patients (6.3%) and anterior blepharitis seen in 12 patients (3.3%). Other ocular complications included microvasculopathy, immune recovery uveitis, conjunctivitis, papilloma, anterior uveitis, corneal ulcer, nevus, trichiasis, molluscum contangiosum, Kaposi sarcoma, interstitial keratitis, conjunctival lymphangiectasia, dacryocystitis, vernal keratoconjunctivitis and eyelid penicilosis. In this study, the prevalance of anterior segment disorders was higher than in the preHAART era. Dry eye, blepharitis and uveitis were the top three most common anterior segment disorders in the HAART era. The statistical analysis showed no association between age, sex, CD4 count, duration of infection or receiving HAART and anterior segment disorders. Anterior segment abnormalities reduce the quality of life of patients, so ophthalmologists have to be aware and complete ocular examination should be performed in all HIV infected patients. PMID:29466424

Impact of diagenesis on the environmental magnetic record from a Holocene sedimentary sequence from the Chukchi-Alaskan margin, Arctic Ocean

NASA Astrophysics Data System (ADS)

Brachfeld, Stefanie; Barletta, Francesco; St-Onge, Guillaume; Darby, Dennis; Ortiz, Joseph D.

2009-07-01

We present a high-resolution Holocene sedimentary record of environmental variability from the eastern Chukchi Sea. An ice-rafted debris bearing silty-clay marks the deglacial to post-glacial Holocene transition at this site and is dated at 9.7 ka. An interval of oscillating magnetic parameters from 9.5 to 8.7 ka coincides with the Holocene Thermal Maximum in the western Arctic, and is manifested at the study area as pulses of fine-grained magnetite input every 180-230 years, possibly from increased river discharge or stronger currents flowing over the core site. The magnetic mineral assemblage is very uniform over the last 8.2 ka and consists of a mixture of magnetite, titanomagnetite, and a magnetic phase that we tentatively identify as the magnetic iron sulfide greigite. The amount of magnetic iron sulfides increases up through the Holocene, a trend that is controlled by the amount of marine organic matter available to fuel bacterial sulfate reduction. The median destructive field of the Natural Remanent Magnetization (MDF NRM) displays centennial to millennial scale cycles with significant variance at periods of 900-1300 and 1700-2700 years, with intervals of high MDF NRM values coinciding with indicators of greater sea ice cover [McKay, J., de Vernal, A., Hillaire-Marcel, C., Not, C., Polyak, L., Darby, D., 2008. Holocene fluctuations in Arctic sea-ice cover: Dinocyst-based reconstructions for the eastern Chukchi Sea. Can. J. Earth Sci. 45, 1399-1415]. The MDF NRM is controlled by the variable abundance of iron sulfides formed during early diagenesis. We interpret intervals of high MDF NRM values as times of stronger water column stratification, during which the pyritization process was interrupted by the lack of marine organic matter and lack of reactive iron. Intervals of low MDF NRM values, which coincide with indicators of reduced sea ice cover, are interpreted as times of stronger vertical mixing of the water column, which allows fresh marine organic matter and reactive iron to reach the seafloor, driving the pyritization process to completion.

When Will It Be... USNO Seasons and Apsides Calculator

NASA Astrophysics Data System (ADS)

Chizek Frouard, Malynda; Bartlett, Jennifer Lynn

2018-01-01

The turning of the Earth’s seasons (solstices and equinoxes) and apsides (perihelions and aphelions) are times often used in observational astronomy and also of interest to the public. To avoid tedious calculations, the U.S. Naval Observatory (USNO) has developed an on-line interactive calculator, Earth’s Seasons and Apsides to provide information about events between 1600 and 2200. The new data service uses an Application Programming Interface (API), which returns values in JavaScript Object Notation (JSON) that can be incorporated into third-party websites or applications. For a requested year, the Earth’s Seasons and Apsides API provides the Gregorian calendar date and time of the Vernal Equinox, Summer Solstice, Autumnal Equinox, Winter Solstice, Aphelion, and Perihelion. The user may specify the time zone for their results, including the optional addition of U.S. daylight saving time for years after 1966.On-line documentation for using the API-enabled Earth’s Seasons and Apsides is available, including sample calls (http://aa.usno.navy.mil/data/docs/api.php). A traditional forms-based interface is available as well (http://aa.usno.navy.mil/data/docs/EarthSeasons.php). This data service replaces the popular Earth's Seasons: Equinoxes, Solstices, Perihelion, and Aphelion page that provided a static list of events for 2000–2025. The USNO also provides API-enabled data services for Complete Sun and Moon Data for One Day (http://aa.usno.navy.mil/data/docs/RS_OneDay.php), Dates of the Primary Phases of the Moon (http://aa.usno.navy.mil/data/docs/MoonPhase.php), Selected Christian Observances (http://aa.usno.navy.mil/data/docs/easter.php), Selected Islamic Observances (http://aa.usno.navy.mil/data/docs/islamic.php), Selected Jewish Observances (http://aa.usno.navy.mil/data/docs/passover.php), Julian Date Conversion (http://aa.usno.navy.mil/data/docs/JulianDate.php), and Sidereal Time (http://aa.usno.navy.mil/data/docs/siderealtime.php) as well as its Solar Eclipse Computer (http://aa.usno.navy.mil/data/docs/SolarEclipses.php).

Early Dynamics of the Moon's Core

NASA Astrophysics Data System (ADS)

Cuk, Matija; Hamilton, Douglas; Stewart, Sarah T.

2018-04-01

The Moon has a small molten iron core (Williams et al. 2006). Remanent magnetization in lunar rocks likely derives from a past lunar dynamo (Wieczorek 2018 and references therein), which may have been powered by differential precession between the mantle and the core. The rotations of the lunar mantle and core were largely decoupled for much of lunar history, with a large mutual offset during the Cassini State Transition (Meyer and Wisdom, 2011). It is likely that the past work underestimated lunar obliquities, and therefore core offsets, during early lunar history (Cuk et al. 2016). Here we investigate the dynamics of the lunar core and mantle using a Lie-Poisson numerical integrator (Touma and Wisdom 2001) which includes interactions between triaxial core and mantle, as well as all gravitational and tidal effects included in the model of Cuk et al. (2016). Since we assume a rigid triaxial mantle, this model is applicable to the Moon only once it has acquired its current shape, which probably happened before the Moon reached 25 Earth radii. While some details of the core dynamics depend on our assumptions about the shape of the lunar core-mantle boundary, we can report some robust preliminary findings. The presence of the core does not change significantly the evolutionary scenario of Cuk et al. (2016). The core and mantle are indeed decoupled, with the core having a much smaller obliquity to the ecliptic than the mantle for almost all of the lunar history. The core was largely in an equivalent of Cassini State 2, with the vernal equinoxes (wrt the ecliptic) of the core and the mantle being anti-aligned. The core-mantle spin axis offset has been very large during the Moon's first billion years (this is true both in canonical and high-inclination tidal evolution), causing the lunar core to be sub-synchronous. If the ancient lunar magnetic dipole was rotating around the core axis that was inclined to the Moon's spin axis, then the magnetic poles would move across the lunar surface as the mantle rotates independently. This relative motion would dilute the average dipole field over much of the lunar surface, and would would restrict meaningful average fields to low lunar latitudes.

Cloudy with a Chance of Ice: The Stratification of Titan's Vernal Ponds and Formation of Ethane Ice

NASA Astrophysics Data System (ADS)

Soderblom, J. M.; Steckloff, J. K.

2017-12-01

Cassini ISS observations revealed regions on Saturn's moon Titan that become significantly darker (lower albedo) following storm events [1]. These regions are observed to be topographically low [2], indicating that liquid (predominantly methane-ethane-nitrogen) is pooling on Titan after these storm events. These dark ponds, however, are then observed to significantly brighten (higher albedo relative to pre-storm albedo), before fading to their pre-storm albedos [2-3]. We interpret these data to indicate ethane ice formation, which cools from evaporation of methane. The formation of ethane ices results from a unique sequence of thermophysical and thermochemical phenomena. Initially, the methane in the mixture evaporates, cooling the pond. Nitrogen, dissolved primarily in the methane, exsolves, further cooling the liquid. However, because nitrogen is significantly more soluble in cooler methane-hydrocarbon mixtures, relatively more methane than nitrogen leaves the fluid, increasing the relative fraction of nitrogen. This increased nitrogen fraction increases the density of the liquid, as nitrogen is significantly denser than methane or ethane (pure ethane's density is intermediate to that of methane and nitrogen). At around 85 K the mixture is as dense as pure liquid ethane. Thus, further evaporative methane loss and cooling at the pond's surface leads to a chemical stratification, with an increasingly ethane rich epilimnion (surface layer) overlying a methane rich hypolimnion (subsurface layer). Further evaporation of methane from the ethane-rich epilimnion drives its temperature and composition toward the methane-ethane-nitrogen liquidus curve, causing pure ethane ice to precipitate out of solution and settle to the bottom of the pool. This settling would obscure the ethane ice from Cassini VIMS and ISS, which would instead continue to appear as a dark pond on the surface. As the ethane precipitates out completely, a binary methane-nitrogen liquid mixture remains. Eventually, this residual liquid evaporates away, exposing the submerged ethane ice, which Cassini VIMS and ISS would observe as a dramatic brightening of the surface, consistent with observations. [1] Turtle et al. 2009, GRL; 2011, Science; [2] Soderblom et al. 2014, DPS; [3] Barnes et al. 2013 Planet. Sci

Effects of two long-term mowing regimes on vegetation

USGS Publications Warehouse

Perry, M.C.; Deller, A.S.

2000-01-01

Wildlife managers have for many years been interested in the role of mowing as a management technique to benefit wildlife. Two long-term mowing regimes (60 years of similar management) were evaluated at Patuxent Research Refuge during the summer of 1997 to better understand the influence of mowing on vegetation communities. Mowing ceased in 1997 due to reduction in maintenance funds, which facilitated the identification of mature grasses. The previous mowing regimes included (1) lawn areas that had been mowed with rotary mowers approximately every 24 weeks and (2) meadow areas that had been mowed approximately once a year with a brushhog. Each regime had two replications. Vegetation was sampled in 20, 1 m2 plots per area (n=80) and percent cover visually estimated by species. The percent ground cover of the dominant vegetation on the lawn area was 40.0% red fescue (Festuca rubra), 26.5% white clover (Trifolium repens), and 18.0% Kentucky blue grass (Poa pratensis). The percent ground cover of the dominant vegetation in the meadow area was 33.2% meadow fescue (Festuca elatior), 9.9% sweet vernal grass (Anthoxanthum odoratum), 9.2% orchard grass (Dactylis glomerata), 6.3% Japanese honeysuckle (Lonicera japonica), and 5.2% red fescue. The sites were sampled again in 1999 with the major difference being the absence of white clover in the lawn areas, believed to be a result of the drought conditions in recent years. All percent ground covers for the dominant vegetation were significantly different (P<0.01) between the two mowing regimes. Species richness was higher in both years in the meadow regime (74, 62) versus the lawn regime (33, 23). Frequently mowed lawn areas may provide better grazing forage for herbivores, such as geese, rabbits, and deer, however, meadow areas may provide greater plant biomass (232 vs. 63 g/m2) and greater diversity of plant species. The meadow regime also appeared to have greater seed production and cover, which is favored by a wider variety of wildlife species, especially passerine birds and small mammals.

Building a Genetic Manipulation Tool Box for Orchid Biology: Identification of Constitutive Promoters and Application of CRISPR/Cas9 in the Orchid, Dendrobium officinale.

PubMed

Kui, Ling; Chen, Haitao; Zhang, Weixiong; He, Simei; Xiong, Zijun; Zhang, Yesheng; Yan, Liang; Zhong, Chaofang; He, Fengmei; Chen, Junwen; Zeng, Peng; Zhang, Guanghui; Yang, Shengchao; Dong, Yang; Wang, Wen; Cai, Jing

2016-01-01

Orchidaceae is the second largest family of flowering plants, which is highly valued for its ornamental purposes and medicinal uses. Dendrobium officinale is a special orchid species that can grow without seed vernalization. Because the whole-genome sequence of D. officinale is publicly available, this species is poised to become a convenient research model for the evolutionary, developmental, and genetic studies of Orchidaceae. Despite these advantages, the methods of genetic manipulation are poorly developed in D. officinale . In this study, based on the previously developed Agrobacterium -mediated gene transformation system, we identified several highly efficient promoters for exogenous gene expression and successfully applied the CRISPR/Cas9 system for editing endogenous genes in the genome of D. officinale . These two basic techniques contribute to the genetic manipulation toolbox of Orchidaceae. The pCambia-1301-35SN vector containing the CaMV 35S promoter and the β-glucuronidase ( GUS ) and Superfolder green fluorescence protein (SG) as reporter genes were introduced into the plant tissues by the Agrobacterium -mediated transformation system. Fluorescence emission from the transformed plants confirmed the successful transcription and translation of SG genes into functional proteins. We compared the GUS activity under different promoters including four commonly used promoters (MtHP, CVMV, MMV and PCISV) with CaMV 35S promoter and found that MMV, CVMV, and PCISV were as effective as the 35S promoter. Furthermore, we applied the CRISPR/Cas9-mediated genome editing system successfully in D. officinale . By selecting five target genes ( C3H, C4H, 4CL, CCR, and IRX ) in the lignocellulose biosynthesis pathway, we showed that, for a given target, this system can generate edits (insertions, deletions, or substitutions) at a rate of 10 to 100%. These results showed that our two genetic manipulation tools can efficiently express exogenous genes and edit endogenous genes in D. officinale . These efficient research tools will not only help create novel D. officinale varieties, but will also facilitate the molecular genetic investigation of orchid biology.

Effect of Ppd-1 on the expression of flowering-time genes in vegetative and reproductive growth stages of wheat.

PubMed

Kitagawa, Satoshi; Shimada, Sanae; Murai, Koji

2012-01-01

The photoperiod sensitivity gene Ppd-1 influences the timing of flowering in temperate cereals such as wheat and barley. The effect of Ppd-1 on the expression of flowering-time genes was assessed by examining the expression levels of the vernalization genes VRN1 and VRN3/WFT and of two CONSTANS-like genes, WCO1 and TaHd1, during vegetative and reproductive growth stages. Two near-isogenic lines (NILs) were used: the first carried a photoperiod-insensitive allele of Ppd-1 (Ppd-1a-NIL), the other, a photoperiod-sensitive allele (Ppd-1b-NIL). We found that the expression pattern of VRN1 was similar in Ppd-1a-NIL and Ppd-1b-NIL plants, suggesting that VRN1 is not regulated by Ppd-1. Under long day conditions, VRN3/WFT showed similar expression patterns in Ppd-1a-NIL and Ppd-1b-NIL plants. However, expression differed greatly under short day conditions: VRN3/WFT expression was detected in Ppd-1a-NIL plants at the 5-leaf stage when they transited from vegetative to reproductive growth; very low expression was present in Ppd-1b-NIL throughout all growth stages. Thus, the Ppd-1b allele acts to down-regulate VRN3/WFT under short day conditions. WCO1 showed high levels of expression at the vegetative stage, which decreased during the phase transition and reproductive growth stages in both Ppd-1a-NIL and Ppd-1b-NIL plants under short day conditions. By contrast to WCO1, TaHd1 was up-regulated during the reproductive stage. The level of TaHd1 expression was much higher in Ppd-1a-NIL than the Ppd-1b-NIL plants, suggesting that the Ppd-1b allele down-regulates TaHd1 under short day conditions. The present study indicates that down-regulation of VRN3/WFT together with TaHd1 is the cause of late flowering in the Ppd-1b-NIL plants under short day conditions.

The Mediterranean: the cradle of Anthoxanthum (Poaceae) diploid diversity.

PubMed

Chumová, Zuzana; Záveská, Eliška; Mandáková, Terezie; Krak, Karol; Trávnícek, Pavel

2017-08-01

Knowledge of diploid phylogeny and ecogeography provide a foundation for understanding plant evolutionary history, diversification patterns and taxonomy. The genus Anthoxanthum (vernal grasses, Poaceae) represents a taxonomically intricate polyploid complex with large phenotypic variation and poorly resolved evolutionary relationships. The aims of the study were to reveal: (1) evolutionary lineages of the diploid taxa and their genetic differentiation; (2) the past distribution of the rediscovered 'Mediterranean diploid'; and (3) possible migration routes of diploids in the Mediterranean. A combined approach involving sequencing of two plastid regions ( trnL-trnF and rpl32-trnL ), nrDNA ITS, rDNA FISH analyses, climatic niche characterization and spatio-temporal modelling was used. Among the examined diploid species, only two well-differentiated evolutionary lineages were recognized: Anthoxanthum gracile and A. alpinum . The other taxa - A. aristatum, A. ovatum, A. maderense and the 'Mediterranean diploid' - form a rather intermixed group based on the examined molecular data. In situ rDNA localization enabled identification of the ancestral Anthoxanthum karyotype, shared by A. gracile and two taxa from the crown group. For the studied taxa, ancestral location probabilities for six discrete geographical regions in the Mediterranean were proposed and likely scenarios of gradual expansion from them were suggested. Modelling past and present distributions shows that the 'Mediterranean diploid' has already been occurring in the same localities for 120 000 years. Highly congruent results were obtained and dated the origin and first diversification of Anthoxanthum to the Miocene. The later divergence probably took place in the Pleistocene and started polyploid evolution within the genus. The most recent diversification event is still occurring, and incomplete lineage sorting prevents full diversification of taxa at the molecular level, despite clear separation based on climatic niches. The 'Mediterranean diploid' is hypothesized to be a possible relic of the most recent common ancestor of Anthoxanthum due to their sharing of ancestral features. © The Author 2017. Published by Oxford University Press on behalf of the Annals of Botany Company. All rights reserved. For Permissions, please email: journals.permissions@oup.com

Seasonal variation and impact of waste-water lagoons as larval habitat on the population dynamics of Culicoides sonorensis (Diptera:Ceratpogonidae) at two dairy farms in northern California.

PubMed

Mayo, Christie E; Osborne, Cameron J; Mullens, Bradley A; Gerry, Alec C; Gardner, Ian A; Reisen, William K; Barker, Christopher M; Maclachlan, N James

2014-01-01

The Sacramento (northern Central) Valley of California (CA) has a hot Mediterranean climate and a diverse ecological landscape that is impacted extensively by human activities, which include the intensive farming of crops and livestock. Waste-water ponds, marshes, and irrigated fields associated with these agricultural activities provide abundant larval habitats for C. sonorensis midges, in addition to those sites that exist in the natural environment. Within this region, C. sonorensis is an important vector of bluetongue (BTV) and related viruses that adversely affect the international trade and movement of livestock, the economics of livestock production, and animal welfare. To characterize the seasonal dynamics of immature and adult C. sonorensis populations, abundance was monitored intensively on two dairy farms in the Sacramento Valley from August 2012- to July 2013. Adults were sampled every two weeks for 52 weeks by trapping (CDC style traps without light and baited with dry-ice) along N-S and E-W transects on each farm. One farm had large operational waste-water lagoons, whereas the lagoon on the other farm was drained and remained dry during the study. Spring emergence and seasonal abundance of adult C. sonorensis on both farms coincided with rising vernal temperature. Paradoxically, the abundance of midges on the farm without a functioning waste-water lagoon was increased as compared to abundance on the farm with a waste-water lagoon system, indicating that this infrastructure may not serve as the sole, or even the primary larval habitat. Adult midges disappeared from both farms from late November until May; however, low numbers of parous female midges were detected in traps set during daylight in the inter-seasonal winter period. This latter finding is especially critical as it provides a potential mechanism for the "overwintering" of BTV in temperate regions such as northern CA. Precise documentation of temporal changes in the annual abundance and dispersal of Culicoides midges is essential for the creation of models to predict BTV infection of livestock and to develop sound abatement strategies.

Ecological risks of shale oil and gas development to wildlife, aquatic resources and their habitats

USGS Publications Warehouse

Brittingham, Margaret C.; Maloney, Kelly O.; Farag, Aïda M.; Harper, David D.; Bowen, Zachary H.

2014-01-01

Technological advances in hydraulic fracturing and horizontal drilling have led to the exploration and exploitation of shale oil and gas both nationally and internationally. Extensive development of shale resources has occurred within the United States over the past decade, yet full build out is not expected to occur for years. Moreover, countries across the globe have large shale resources and are beginning to explore extraction of these resources. Extraction of shale resources is a multistep process that includes site identification, well pad and infrastructure development, well drilling, high-volume hydraulic fracturing and production; each with its own propensity to affect associated ecosystems. Some potential effects, for example from well pad, road and pipeline development, will likely be similar to other anthropogenic activities like conventional gas drilling, land clearing, exurban and agricultural development and surface mining (e.g., habitat fragmentation and sedimentation). Therefore, we can use the large body of literature available on the ecological effects of these activities to estimate potential effects from shale development on nearby ecosystems. However, other effects, such as accidental release of wastewaters, are novel to the shale gas extraction process making it harder to predict potential outcomes. Here, we review current knowledge of the effects of high-volume hydraulic fracturing coupled with horizontal drilling on terrestrial and aquatic ecosystems in the contiguous United States, an area that includes 20 shale plays many of which have experienced extensive development over the past decade. We conclude that species and habitats most at risk are ones where there is an extensive overlap between a species range or habitat type and one of the shale plays (leading to high vulnerability) coupled with intrinsic characteristics such as limited range, small population size, specialized habitat requirements, and high sensitivity to disturbance. Examples include core forest habitat and forest specialists, sagebrush habitat and specialists, vernal pond inhabitants and stream biota. We suggest five general areas of research and monitoring that could aid in development of effective guidelines and policies to minimize negative impacts and protect vulnerable species and ecosystems: (1) spatial analyses, (2) species-based modeling, (3) vulnerability assessments, (4) ecoregional assessments, and (5) threshold and toxicity evaluations.

Ecological risks of shale oil and gas development to wildlife, aquatic resources and their habitats.

PubMed

Brittingham, Margaret C; Maloney, Kelly O; Farag, Aïda M; Harper, David D; Bowen, Zachary H

2014-10-07

Technological advances in hydraulic fracturing and horizontal drilling have led to the exploration and exploitation of shale oil and gas both nationally and internationally. Extensive development of shale resources has occurred within the United States over the past decade, yet full build out is not expected to occur for years. Moreover, countries across the globe have large shale resources and are beginning to explore extraction of these resources. Extraction of shale resources is a multistep process that includes site identification, well pad and infrastructure development, well drilling, high-volume hydraulic fracturing and production; each with its own propensity to affect associated ecosystems. Some potential effects, for example from well pad, road and pipeline development, will likely be similar to other anthropogenic activities like conventional gas drilling, land clearing, exurban and agricultural development and surface mining (e.g., habitat fragmentation and sedimentation). Therefore, we can use the large body of literature available on the ecological effects of these activities to estimate potential effects from shale development on nearby ecosystems. However, other effects, such as accidental release of wastewaters, are novel to the shale gas extraction process making it harder to predict potential outcomes. Here, we review current knowledge of the effects of high-volume hydraulic fracturing coupled with horizontal drilling on terrestrial and aquatic ecosystems in the contiguous United States, an area that includes 20 shale plays many of which have experienced extensive development over the past decade. We conclude that species and habitats most at risk are ones where there is an extensive overlap between a species range or habitat type and one of the shale plays (leading to high vulnerability) coupled with intrinsic characteristics such as limited range, small population size, specialized habitat requirements, and high sensitivity to disturbance. Examples include core forest habitat and forest specialists, sagebrush habitat and specialists, vernal pond inhabitants and stream biota. We suggest five general areas of research and monitoring that could aid in development of effective guidelines and policies to minimize negative impacts and protect vulnerable species and ecosystems: (1) spatial analyses, (2) species-based modeling, (3) vulnerability assessments, (4) ecoregional assessments, and (5) threshold and toxicity evaluations.

Uncertainty and sensitivity assessments of an agricultural-hydrological model (RZWQM2) using the GLUE method

NASA Astrophysics Data System (ADS)

Sun, Mei; Zhang, Xiaolin; Huo, Zailin; Feng, Shaoyuan; Huang, Guanhua; Mao, Xiaomin

2016-03-01

Quantitatively ascertaining and analyzing the effects of model uncertainty on model reliability is a focal point for agricultural-hydrological models due to more uncertainties of inputs and processes. In this study, the generalized likelihood uncertainty estimation (GLUE) method with Latin hypercube sampling (LHS) was used to evaluate the uncertainty of the RZWQM-DSSAT (RZWQM2) model outputs responses and the sensitivity of 25 parameters related to soil properties, nutrient transport and crop genetics. To avoid the one-sided risk of model prediction caused by using a single calibration criterion, the combined likelihood (CL) function integrated information concerning water, nitrogen, and crop production was introduced in GLUE analysis for the predictions of the following four model output responses: the total amount of water content (T-SWC) and the nitrate nitrogen (T-NIT) within the 1-m soil profile, the seed yields of waxy maize (Y-Maize) and winter wheat (Y-Wheat). In the process of evaluating RZWQM2, measurements and meteorological data were obtained from a field experiment that involved a winter wheat and waxy maize crop rotation system conducted from 2003 to 2004 in southern Beijing. The calibration and validation results indicated that RZWQM2 model can be used to simulate the crop growth and water-nitrogen migration and transformation in wheat-maize crop rotation planting system. The results of uncertainty analysis using of GLUE method showed T-NIT was sensitive to parameters relative to nitrification coefficient, maize growth characteristics on seedling period, wheat vernalization period, and wheat photoperiod. Parameters on soil saturated hydraulic conductivity, nitrogen nitrification and denitrification, and urea hydrolysis played an important role in crop yield component. The prediction errors for RZWQM2 outputs with CL function were relatively lower and uniform compared with other likelihood functions composed of individual calibration criterion. This new and successful application of the GLUE method for determining the uncertainty and sensitivity of the RZWQM2 could provide a reference for the optimization of model parameters with different emphases according to research interests.

Physical and Chemical Properties of Seasonal Snow and the Impacts on Albedo in New Hampshire, USA

NASA Astrophysics Data System (ADS)

Adolph, A. C.; Albert, M. R.; Amante, J.; Dibb, J. E.

2014-12-01

Snow albedo is critical to surface energy budgets and thus to the timing of mid-winter and vernal melt events in seasonal snow packs. Timing of these melt events is important in predicting flooding, understanding plant and animal phenology, and the availability of winter recreational activity. The state of New Hampshire experiences large spatial and temporal variability in snow albedo as a result of differences in meteorological conditions, physical snow structure, and chemical impurities in the snow, particularly highly absorptive black carbon (BC) and dust particles. This work focuses on the winters of 2012-2013 and 2013-2014, comparing three intensive study sites. Data collected at these sites include sub-hourly meteorological data, near daily measurements of snow depth, snow density, surface IR temperature, specific surface area (SSA) from contact spectroscopy, and spectrally resolved snow albedo using an ASD FieldSpec4 throughout the winter season. Additionally, snow samples were analyzed for black carbon content and other chemical impurities including Cl-, NO3-, NH4 , K , Na , Mg2+ , Ca2+ and SO42-. For each storm event at the three intensive sites, moisture sources and paths were determined using HYPLIT back trajectory modeling to determine potential sources of black carbon and other impurities in the snow. Storms with terrestrial-based paths across the US Midwest and Canada resulted in higher BC content than storms with ocean-based paths and sources. In addition to the variable storm path between sites and between years, the second year of study was on average 2.5°C colder than the first year, impacting duration of snow cover at each site and the SSA of surface snow which is sensitive to frequency of snow events and relies on cold temperatures to reduce grain metamorphism. Combining an understanding of storm frequency and path with physical and chemical attributes of the snow allows us to investigate snow albedo sensitivities with implications for understanding the impacts of future climate change on snow albedo in the Northeastern US.

De novo Transcriptome Assembly of Floral Buds of Pineapple and Identification of Differentially Expressed Genes in Response to Ethephon Induction

PubMed Central

Liu, Chuan-He; Fan, Chao

2016-01-01

A remarkable characteristic of pineapple is its ability to undergo floral induction in response to external ethylene stimulation. However, little information is available regarding the molecular mechanism underlying this process. In this study, the differentially expressed genes (DEGs) in plants exposed to 1.80 mL·L−1 (T1) or 2.40 mL·L−1 ethephon (T2) compared with Ct plants (control, cleaning water) were identified using RNA-seq and gene expression profiling. Illumina sequencing generated 65,825,224 high-quality reads that were assembled into 129,594 unigenes with an average sequence length of 1173 bp. Of these unigenes, 24,775 were assigned to specific KEGG pathways, of which metabolic pathways and biosynthesis of secondary metabolites were the most highly represented. Gene Ontology (GO) analysis of the annotated unigenes revealed that the majority were involved in metabolic and cellular processes, cell and cell part, catalytic activity and binding. Gene expression profiling analysis revealed 3788, 3062, and 758 DEGs in the comparisons of T1 with Ct, T2 with Ct, and T2 with T1, respectively. GO analysis indicated that these DEGs were predominantly annotated to metabolic and cellular processes, cell and cell part, catalytic activity, and binding. KEGG pathway analysis revealed the enrichment of several important pathways among the DEGs, including metabolic pathways, biosynthesis of secondary metabolites and plant hormone signal transduction. Thirteen DEGs were identified as candidate genes associated with the process of floral induction by ethephon, including three ERF-like genes, one ETR-like gene, one LTI-like gene, one FT-like gene, one VRN1-like gene, three FRI-like genes, one AP1-like gene, one CAL-like gene, and one AG-like gene. qPCR analysis indicated that the changes in the expression of these 13 candidate genes were consistent with the alterations in the corresponding RPKM values, confirming the accuracy and credibility of the RNA-seq and gene expression profiling results. Ethephon-mediated induction likely mimics the process of vernalization in the floral transition in pineapple by increasing LTI, FT, and VRN1 expression and promoting the up-regulation of floral meristem identity genes involved in flower development. The candidate genes screened can be used in investigations of the molecular mechanisms of the flowering pathway and of various other biological mechanisms in pineapple. PMID:26955375

Hybridization and long-distance colonization at different time scales: towards resolution of long-term controversies in the sweet vernal grasses (Anthoxanthum)

PubMed Central

Pimentel, Manuel; Sahuquillo, Elvira; Torrecilla, Zeltia; Popp, Magnus; Catalán, Pilar; Brochmann, Christian

2013-01-01

Background and Aims Repeated hybridization and/or polyploidization confound classification and phylogenetic inference, and multiple colonizations at different time scales complicate biogeographical reconstructions. This study investigates whether such processes can explain long-term controversies in Anthoxanthum, and in particular its debated relationship to the genus Hierochloë, the evolution of its conspicuously diverse floral morphology, and the origins of its strikingly disjunct occurrences. A hypothesis for recurrent polyploid formation is proposed. Methods Three plastid (trnH-psbA, trnT-L and trnL-F) and two nuclear (ITS, ETS) DNA regions were sequenced in 57 accessions of 17 taxa (including 161 ETS clones) and Bayesian phylogenetic analyses were conducted. Divergence times were inferred in *BEAST using a strict molecular clock. Key Results Anthoxanthum was inferred as monophyletic and sister to one species of Hierochloë based on the plastid data, whereas the nuclear data suggested that one section (Anthoxanthum section Anthoxanthum) is sister to a clade including the other section (Anthoxanthum section Ataxia) as sister to the genus Hierochloë. This could explain the variation in floral morphology; the aberrant characters in Ataxia seem to result from a Miocene hybridization event between one lineage with one fertile and two sterile florets (the Anthoxanthum lineage) and one which probably had three fertile florets as in extant Hierochloë. The distinct diploid A. gracile lineage originated in the Miocene; all other speciation events, many of them involving polyploidy, were dated to the Late Pliocene to Late Pleistocene. Africa was apparently colonized twice in the Late Pliocene (from the north to afro-alpine eastern Africa, and from south-east Asia to southern Africa), whereas Macaronesia was colonized much later (Late Pleistocene) by a diploid Mediterranean lineage. The widespread European tetraploid A. odoratum originated at least twice. Conclusions Many of the controversies in Anthoxanthum can be explained by recurring hybridization and/or polyploidization on time scales ranging from the Miocene to the Late Pleistocene. All but one of the extant species shared most recent common ancestors in the Late Pliocene to the Late Pleistocene. The disjunct occurrences in Africa originated in the Late Pliocene via independent immigrations, whereas Macaronesia was colonized in the Late Pleistocene. PMID:23912698

Validation of measured poleward TEC gradient using multi-station GPS with Artificial Neural Network based TEC model in low latitude region for developing predictive capability of ionospheric scintillation

NASA Astrophysics Data System (ADS)

Sur, D.; Paul, A.

2017-12-01

The equatorial ionosphere shows sharp diurnal and latitudinal Total Electron Content (TEC) variations over a major part of the day. Equatorial ionosphere also exhibits intense post-sunset ionospheric irregularities. Accurate prediction of TEC in these low latitudes is not possible from standard ionospheric models. An Artificial Neural Network (ANN) based Vertical TEC (VTEC) model has been designed using TEC data in low latitude Indian longitude sector for accurate prediction of VTEC. GPS TEC data from the stations Calcutta (22.58°N, 88.38°E geographic, magnetic dip 32°), Baharampore (24.09°N, 88.25°E geographic, magnetic dip 35°) and Siliguri (26.72°N, 88.39°E geographic; magnetic dip 40°) are used as training dataset for the duration of January 2007-September 2011. Poleward VTEC gradients from northern EIA crest to region beyond EIA crest have been calculated from measured VTEC and compared with that obtained from ANN based VTEC model. TEC data from Calcutta and Siliguri are used to compute VTEC gradients during April 2013 and August-September 2013. It has been observed that poleward VTEC gradient computed from ANN based TEC model has shown good correlation with measured values during vernal and autumnal equinoxes of high solar activity periods of 2013. Possible correlation between measured poleward TEC gradients and post-sunset scintillations (S4 ≥ 0.4) from northern crest of EIA has been observed in this paper. From the observation, a suitable threshold poleward VTEC gradient has been proposed for possible occurrence of post-sunset scintillations at northern crest of EIA along 88°E longitude. Poleward VTEC gradients obtained from ANN based VTEC model are used to forecast possible ionospheric scintillation after post-sunset period using the threshold value. It has been observed that these predicted VTEC gradients obtained from ANN based VTEC model can forecast post-sunset L-band scintillation with an accuracy of 67% to 82% in this dynamic low latitude region. The use of VTEC gradients from ANN based VTEC model removes the necessity of continuous operation of multi-station ground based TEC receivers in this low latitude region.

36Cl, 10Be and 26Al analyses from the GISP2 bedrock core and the stability of the Greenland Ice Sheet

NASA Astrophysics Data System (ADS)

Schaefer, J. M.; Finkel, R. C.; Fifield, L. K.; Balco, G.; Caffee, M.; Alley, R. B.; Briner, J. P.; Young, N. E.; Gow, A. J.; Schwartz, R.

2017-12-01

The Greenland Ice Sheet (GIS) contains the equivalent of 7.4 meters (24 feet) of global sea-level rise. Its stability in our warming climate is therefore a pressing concern. However, the scarcity of proxy evidence of the palaeo-stability of the GIS means that its history remains controversial (for example 1 vs. 2). Current model simulations of the past GIS configuration during warm periods remain ambiguous but do show that both the magnitude and the duration of warmth are critical to ice-sheet stability. Much of this uncertainty reflects the fact that the direct evidence, if it exists, is buried beneath the present ice sheet. Here we attempt to overcome this obstacle via cosmogenic nuclide analysis of sub-GIS bedrock. Cosmogenic nuclides directly monitor periods of surface exposure to cosmic ray bombardment and thus ice-free conditions, and the ratios between cosmogenic nuclides of differing half-lives are diagnostic for periods the GIS shielded the bedrock. We focus on the bedrock underneath the 3042 m long GISP2 ice core, retrieved in 1993, and recently published the 10Be (half-life 1.4 Myr) and 26Al (half-life 0.7 Myr) analyses from quartz of this bedrock core 3. The published results show that Greenland was nearly ice-free for extended periods during the Pleistocene (2.6 Myr -11.7 kyr ago) and narrow the spectrum of possible GIS histories: the longest period of stability of the present ice sheet that is consistent with the 10Be and 26Al measurements is 1.1 Myr, assuming that this was preceded by more than 280 kyr of ice-free conditions. More dynamic scenarios, in which Greenland was ice-free during any or all Pleistocene interglacials, would be also consistent with the 10Be and 26Al data. We now present 36Cl (half-life 0.3 Myr) data from feldspars separated from this bedrock core. The measured 36Cl depth profile is consistent with the 10Be and 26Al data, indicating that most of the analyzed 36Cl was produced by neutron spallation during periods of nearly ice-free Greenland. We discuss the implications of these new, direct evidence from the GISP2 bedrock core for the past, present and future GIS stability. References 1 de Vernal, A. & Hillaire-Marcel, C. Science 320, 1622-1625 (2008). 2 Bierman, P. R., et al. Nature 540, 256-258 (2016). 3 Schaefer, J. M. et al. Nature 540, 252-255 (2016).

Effects of Water-Management Strategies on Water Resources in the Pawcatuck River Basin, Southwestern Rhode Island and Southeastern Connecticut

USGS Publications Warehouse

Breault, Robert F.; Zarriello, Phillip J.; Bent, Gardner C.; Masterson, John P.; Granato, Gregory E.; Scherer, J. Eric; Crawley, Kathleen M.

2009-01-01

The Pawcatuck River Basin in southwestern Rhode Island and southeastern Connecticut is an important high-quality water resource for domestic and public supplies, irrigation, recreation, and the aquatic ecosystem. Concerns about the effects of water withdrawals on aquatic habitat in the basin have prompted local, State, and Federal agencies to explore water-management strategies that minimize the effects of withdrawals on the aquatic habitat. As part of this process, the U.S. Geological Survey in cooperation with the U.S. Department of Agriculture Natural Resources Conservation Service and the Rhode Island Water Resources Board completed a study to assess the effects of current (2000-04) and potential water withdrawals on streamflows and groundwater levels using hydrologic simulation models developed for the basin. The major findings of the model simulations are: *Moving highly variable seasonal irrigation withdrawals from streams to groundwater wells away from streams reduces short-term fluctuations in streamflow and increases streamflow in the summer when flows are lowest. This occurs because of the inherent time lag between when water is withdrawn from the aquifer and when it affects streamflow. *A pumped well in the vicinity of small streams indicates that if withdrawals exceed available streamflow, groundwater levels drop substantially as a consequence of water lost from aquifer storage, which may reduce the time wetlands and vernal pools are saturated, affecting the animal and plant life that depend on these habitats. *The effects of pumping on water resources such as ponds, streams, and wetlands can be minimized by relocating pumping wells, implementing seasonal pumping schemes that utilize different wells and pumping rates, or both. *The effects of projected land-use change, mostly from forest to low- and medium density housing, indicate only minor changes in streamflow at the subbasin scale examined; however, at a local scale, high flows could increase, and low flows could decrease as a result of increased impervious area. In some instances, low flows could increase slightly as a result of decreased evapotranspiration from the loss of deeprooted vegetation (forest) associated with development. *In some subbasins where large areas of agricultural lands were converted to low- and medium-density housing, low flows increase because the consumptive domestic water use was projected to be less than consumptive agricultural water use. All agricultural water use was for irrigation purposes and was assumed to be lost from the basin through evapotranspiration.

Seasonal variations of temperature, acetylene and ethane in Saturn's atmosphere from 2005 to 2010, as observed by Cassini-CIRS

NASA Astrophysics Data System (ADS)

Sinclair, J. A.; Irwin, P. G. J.; Fletcher, L. N.; Moses, J. I.; Greathouse, T. K.; Friedson, A. J.; Hesman, B.; Hurley, J.; Merlet, C.

2013-07-01

Acetylene (C2H2) and ethane (C2H6) are by-products of complex photochemistry in the stratosphere of Saturn. Both hydrocarbons are important to the thermal balance of Saturn's stratosphere and serve as tracers of vertical motion in the lower stratosphere. Earlier studies of Saturn's hydrocarbons using Cassini-CIRS observations have provided only a snapshot of their behaviour. Following the vernal equinox in August 2009, Saturn's northern and southern hemispheres have entered spring and autumn, respectively, however the response of Saturn's hydrocarbons to this seasonal shift remains to be determined. In this paper, we investigate how the thermal structure and concentrations of acetylene and ethane have evolved with the changing season on Saturn. We retrieve the vertical temperature profiles and acetylene and ethane volume mixing ratios from Δν˜=15.5cm-1 Cassini-CIRS observations. In comparing 2005 (solar longitude, Ls ˜ 308°), 2009 (Ls ˜ 3°) and 2010 (Ls ˜ 15°) results, we observe the disappearance of Saturn's warm southern polar hood with cooling of up to 17.1 K ± 0.8 K at 1.1 mbar at high-southern latitudes. Comparison of the derived temperature trend in this region with a radiative climate model (Section 4 of Fletcher et al., 2010 and Greathouse et al. (2013, in preparation)) indicates that this cooling is radiative although dynamical changes in this region cannot be ruled out. We observe a 21 ± 12% enrichment of acetylene and a 29 ± 11% enrichment of ethane at 25°N from 2005 to 2009, suggesting downwelling at this latitude. At 15°S, both acetylene and ethane exhibit a decrease in concentration of 6 ± 11% and 17 ± 9% from 2005 to 2010, respectively, which suggests upwelling at this latitude (though a statistically significant change is only exhibited by ethane). These implied vertical motions at 15°S and 25°N are consistent with a recently-developed global circulation model of Saturn's tropopause and stratosphere(Friedson and Moses, 2012), which predicts this pattern of upwelling and downwelling as a result of a seasonally-reversing Hadley circulation. Ethane exhibits a general enrichment at mid-northern latitudes from 2005 to 2009. As the northern hemisphere approaches summer solstice in 2017, this feature might indicate an onset of a meridional enrichment of ethane, as has been observed in the southern hemisphere during/after southern summer solstice.

Discovery of Prehistoric Skies

NASA Astrophysics Data System (ADS)

Gurshtein, A. A.

1995-12-01

It was Charles Francois Dupui, of France, who two centuries ago in his twelve-volume "Origine de tous les cults" (1795) worked out a proposition that all the different religious customs, stories, and dogmas will be found upon examination to have a cradle as one or another aspect of the natural, mainly, astronomical phenomena. It is absolutely correct but he and his spirited followers failed to develop a basic scientific quantitative argument focused on astronomy - chronological distribution of events. It is the first time that a combination of the up-to-date knowledge in archaic symbology and the professional astronomical data for precession and other regular astronomical events constitutes conditions for an absolutely new approach. An astronomical reconstruction of the evolution of the Zodiacal constellations was made, based on the Indo-european and Sumero-Akkadian religio-cultural data, including artifacts such as cult statuettes, cuneiform tablets, cylinder seals and boundary stones. It was argued that the development of 12 houses of the Zodiac in 3 groups of 4 over some six millennia was dictated by the changes made by precession in the positions of the vernal and autumnal equinoxes and the summer and winter solstices. The first quartet of the Zodiacal constellations (Gemini, Virgo, Sagittarius, Pisces) was recognized by the first agriculturists from the Fertile Crescent to learn the four most important Sun positions and to predict the ongoing seasons; it was done as far back as 5,600 B.C. (with a formal error of this determination about +/- 150 years). The second one (Taurus, Leo, Scorpio, Aquarius) was introduced in 2,700 +/- 250 years B.C. by Egyptians with their own animal symbolism that was the etymological root for the term the Zodiac (a circle of animals). This event was followed with the acquaintance of the new calendar and erection of the great pyramids as an eternal sanctuary for their mental triumph. In the first half of 14 century B.C. the Egyptian pharaoh Ekhnaton (Amenhotep 1V) attempted to inaugurate a new four constellation set to fixate the Sun track. The attempt was in vain but it seems the knowledge to go via Moses and the tribes left Egypt for Canaan. According our precessional dating the final design of the Zodiac with 12 houses appeared at 1,200 +/- 400 years B.C. In opposite to the figure 7 which was from the Paleolithic, the first great opus where figure 12 appeared as a sacred one was the Holy Bible. Many other details of the concept proposed are discussed.

VRN1 genes variability in tetraploid wheat species with a spring growth habit.

PubMed

Konopatskaia, Irina; Vavilova, Valeriya; Kondratenko, Elena Ya; Blinov, Alexandr; Goncharov, Nikolay P

2016-11-16

Vernalization genes VRN1 play a major role in the transition from vegetative to reproductive growth in wheat. In di-, tetra- and hexaploid wheats the presence of a dominant allele of at least one VRN1 gene homologue (Vrn-A1, Vrn-B1, Vrn-G1 or Vrn-D1) determines the spring growth habit. Allelic variation between the Vrn-1 and vrn-1 alleles relies on mutations in the promoter region or the first intron. The origin and variability of the dominant VRN1 alleles, determining the spring growth habit in tetraploid wheat species have been poorly studied. Here we analyzed the growth habit of 228 tetraploid wheat species accessions and 25 % of them were spring type. We analyzed the promoter and first intron regions of VRN1 genes in 57 spring accessions of tetraploid wheats. The spring growth habit of most studied spring accessions was determined by previously identified dominant alleles of VRN1 genes. Genetic experiments proof the dominant inheritance of Vrn-A1d allele which was widely distributed across the accessions of Triticum dicoccoides. Two novel alleles were discovered and designated as Vrn-A1b.7 and Vrn-B1dic. Vrn-A1b.7 had deletions of 20 bp located 137 bp upstream of the start codon and mutations within the VRN-box when compared to the recessive allele of vrn-A1. So far the Vrn-A1d allele was identified only in spring accessions of the T. dicoccoides and T. turgidum species. Vrn-B1dic was identified in T. dicoccoides IG46225 and had 11 % sequence dissimilarity in comparison to the promoter of vrn-B1. The presence of Vrn-A1b.7 and Vrn-B1dic alleles is a predicted cause of the spring growth habit of studied accessions of tetraploid species. Three spring accessions T. aethiopicum K-19059, T. turanicum K-31693 and T. turgidum cv. Blancal possess recessive alleles of both VRN-A1 and VRN-B1 genes. Further investigations are required to determine the source of spring growth habit of these accessions. New allelic variants of the VRN-A1 and VRN-B1 genes were identified in spring accessions of tetraploid wheats. The origin and evolution of VRN-A1 alleles in di- and tetraploid wheat species was discussed.

Evidence for biologic response to pedogenesis along the Merced River chronosequence, Central Valley, California

NASA Astrophysics Data System (ADS)

Reed, S. E.; Amundson, R.

2010-12-01

Long-term soil weathering results in accumulations of clay and reduced hydraulic conductivity. How biology responds to these changes in the physical environment and how the response, in turn, influences landscape development are crucial questions in the effort to elucidate the links between the biologic and physical earth surface domains. Mima mounds are small, circular half-domes of soil that are suspected of being formed by burrowing rodents, as an adaption to saturated soil conditions. In the swales between the mounds, ephemeral wetlands called vernal pools, support a suite of endemic and endangered plant and animal species. Mima mounds, then, may provide a useful model by which to examine the complex feedbacks between landscape and life. In this study, changes in mound characteristics and in biological activity (pocket gopher, Thomomys bottae) are investigated across the Merced River chronosequence, a series of alluvial terraces which have been shown to exhibit an increasing degree of soil and hardpan development with landform age. Mound morphology (size, slope, curvature, concentration, elongation, dispersion) and relation to environmental parameters were analyzed using airborne LIDAR (light detection and ranging) imagery of the mounds. The high-resolution (1m) LIDAR surveys (conducted in 2006 and 2010) cover 65km2 and comprise seven different-aged landforms, ranging from several hundred years to several million years. Minimal filtering was performed on the dataset given the absence of large vegetation or other obstructions. A 20x20m moving window filter was used to smooth out the low frequency signals and accentuate mounded features. To test how and whether the subterranean mammals modify their burrowing habits in response to soil age, biotic sediment transport was measured monthly on 0.01, 0.5, and 2 m.y.o. terraces using RFID (radio frequency identification) technology. Half-liter portions of soil containing five RFID tags were implanted in active gopher tunnels on several size classes of mounds and at three positions on each mound (base, mid, and top). Within two weeks of insertion, tags were located using an RFID reader, and displacement was measured using a differential GPS. The surveys show distinct differences in mound and burrow form and biotic activity across the terraces. These results enhance our understanding of the rates at which landscapes are biotically transformed, and, when applied to sediment transport models, provide further evidence that Mima mounds are likely created and maintained by pocket gophers.

A Deep Search for Biomarker Gases on Mars in 2009 - 2010: The Campaign and a Few Preliminary Results

NASA Astrophysics Data System (ADS)

Mumma, M. J.; Villanueva, G. L.; Novak, R.; Radeva, Y. L.; Kaufl, H.; Smette, A.; Hartogh, P.; Encrenaz, T.

2010-12-01

We searched for possible biomarker gases on Mars in the 2009-2010 observing season, emphasizing nine molecules (H2_O, CH_4_, C2_H_6_, C2_H_4_, CH3_OH, H_2_CO, H2_S, and N_2_O) of fundamental astrobiological importance along with HDO and CO2_. Our search utilized Earth’s most advanced ground-based infrared spectroscopic facilities in a campaign of several dozen observing runs spanning the period 19 August 2009 to 10 June 2010. Over this interval (L_s_ = 324 - 103 degrees), the season in Mars’ Northern hemisphere progressed from mid-winter, through vernal equinox and spring, and into early summer. We used long-slit high-resolution infrared spectrometers at the Keck and NASA-IRTF observatories in Hawaii, and the European Southern Observatory in Chile (VLT, Paranal). The spectral resolving powers ranged from ~ 35,000 (NIRSPEC/Keck and CSHELL/IRTF) to ~ 90,000 (CRIRES, VLT). At the sub-Earth point, the spatial resolution in non-AO mode ranged from ~600 km (FWHM) to ~ 400 km at Keck and IRTF. Using the adaptive optics (AO) mode at Keck and at VLT, we achieved an improved resolution of ~250 km (FWHM). We mapped the planet over the Earth-facing hemisphere by orienting the slit North-South in longitude and stepping it East-West across the planet, and we acquired deep searches over restricted longitude ranges by holding the slit fixed in position and taking sequential spectra as Mars rotated under it. Spectral lines of CO2_, H_2_O, HDO, and O2_ (a^1^Δg_) are obvious, even in the raw data. In the methane region near 3.3µm, removal of terrestrial and solar spectral lines revealed multiple lines of Mars H_2_O and CO2_, from which we extracted 2-D (lat-long) maps of Martian water vapor, atmospheric surface pressure and temperature. Subtraction of these features provided highly sensitive searches for trace gases. Preliminary results of searches for CH_4_, C2_H_4_, and C2_H_6_ will be presented in this paper. Radeva et al. (this meeting) will present preliminary results for ozone (derived from O2_ (^1^Δg_) near 1.27 µm). Villanueva et al. (this meeting) will present results for HDO (near 3.7 µm) and H_2_O (near 3.3 µm). Acknowledgements: This work was funded by NASA’s R&A Programs in Astrobiology (344-53-51), Planetary Astronomy (344-32-51-96), and Planetary Atmospheres (NNX09AB65G). We gratefully acknowledge the Director and staff of the European Southern Observatory, the Keck observatory and the NASA-IRTF observatory for supporting these observations.

K-12 Professional Development at the Harvard Forest LTER

NASA Astrophysics Data System (ADS)

Bennett, K.

2012-12-01

As part of the Long Term Ecological Research (LTER) program, the Harvard Forest in Petersham, Massachusetts seeks to train the next generation of researchers, by involving K-12 grade students and their teachers in hands-on, field-based, ecological research in their own schoolyard and community. Students learn to collect data on important long-term ecological issues and processes. Student data are then shared on the Harvard Forest website. To prepare teachers for project protocols, teachers are given direct access to Harvard ecologists with professional development workshops and on-line resources. With the Harvard Forest Schoolyard LTER program, students can participate in three different research projects focusing on phenology, invasive insects, and vernal pools. Teachers attend the Summer Institute for Teachers to learn project content and methods. They return in fall to participate in one of three levels of data workshops to learn how to input, manage, and analyze project data. In the spring, teachers again meet with the Harvard ecologists about project protocols, and to share, through a series of teacher presentations, the ways these project themes are being integrated into class curricula. These professional development opportunities result in long term collaborative partnerships with local schools and the Harvard Forest LTER. In addition to the LTER Schoolyard Ecology Program, the Harvard Forest has supported a successful Research Experience for Teachers (RET) program for the last six years. Throughout the summer, teachers work on research projects alongside Harvard Forest and affiliated scientists, post-docs, graduate students, and REU's (Research Experience for Undergraduates). The RET program provides teachers with the opportunity to build scientific knowledge, develop an understanding of research methods, and translate their new knowledge and experiences into cutting edge classroom lessons. The past two summers I have worked with Dr. Andrew Richardson's Phenocam project, a network of near remote sensing digital phenology cameras that send images of forest, shrub, and grassland vegetation cover at more than 130 diverse sites in North America to the digital archives at the University of New Hampshire. Our school district is now part of this network providing a digital image every half hour of the mixed deciduous/ coniferous forest canopy due north from Overlook Middle School in Ashburnham, Massachusetts. As a part of the Phenocam network, students at the K-12 level have expanded the scope of phenological monitoring that is part of the Harvard Forest LTER Schoolyard Ecology Program protocol, Buds, Leaves, and Global Warming. I have developed a series of lessons comparing student data to phenology data derived from Phenocam network images and Modis satellites. The Phenocam Project and the RET program is supported by NASA.

The Mars Plant Growth Experiment and Implications for Planetary Protection

NASA Astrophysics Data System (ADS)

Smith, Heather

Plants are the ultimate and necessary solution for O2 production at a human base on Mars. Currently it is unknown if seeds can germinate on the Martian surface. The Mars Plant growth experiment (MPX) is a proposal for the first step in the development of a plant- based O2 production system by demonstrating plant germination and growth on the Martian surface. There is currently no planetary protection policy in place that covers plants on the Martian surface. We describe a planetary protection plan in compliance with NASA and COSPAR policy for a closed plant growth chamber on a Mars rover. We divide the plant growth chamber into two categories for planetary protection, the Outside: the outside of the chamber exposed to the Martian environment, and the Inside: the inside of the chamber which is sealed off from Mars atmosphere and contains the plant seeds and ancillary components for seed growth. We will treat outside surfaces of the chamber as other outside surfaces on the rover, wiped with a mixture of isopropyl alcohol and water as per Category IVb planetary protection requirements. All internal components of the MPX except the seeds and camera (including the water system, the plant growth stage and interior surface walls) will be sterilized by autoclave and subjected to sterilizing dry heat at a temperature of 125°C at an absolute humidity corresponding to a relative humidity of less than 25 percent referenced to the standard conditions of 0°C and 760 torr pressure. The seeds and internal compartments of the MPX in contact with the growth media will be assembled and tested to be free of viable microbes. MPX, once assembled, cannot survive Dry Heat Microbial Reduction. The camera with the radiation and CO2 sensors will be sealed in their own container and vented through HEPA filters. The seeds will be vernalized (microbe free) as per current Space Station methods described by Paul et al. 2001. Documentation of the lack of viable microbes on representative seeds from the same seed lot as used in the flight unit and lack of viable microbes in the interior of the MPX will be confirmed by the assay methods outlined in NASA HDBK 6022. In this method surfaces are swabbed and the cells collected on the swabs are extracted and then cultured following a standard protocol. All operations involving the manipulation of sterile items and sample processing shall be performed in laminar flow environments meeting Class 100 air cleanliness requirements of Federal Standard 209B. The entire MPX will be assembled in a sterile environment within a month of launch if possible, but could withstand an earlier assembly if required.

Ionospheric manifestations of acoustic-gravity waves under quiet and disturbed conditions

NASA Astrophysics Data System (ADS)

Barabash, Vladimir; Chernogor, Leonid; Panasenko, Sergii; Domnin, Igor

2014-05-01

We present the observation results of wave disturbances in the ionosphere, which are known to be manifestations of atmospheric acoustic-gravity waves (AGWs). The observations have been conducted under quiet and naturally or artificially disturbed conditions by ionosonde and incoherent scatter radar located near Kharkiv, Ukraine. Wave disturbance parameters under quiet conditions were obtained and analysed during geophysical periods including vernal and autumn equinoxes as well as summer and winter solstices. The prevailing oscillation in ionospheric F2- layer had the period of 140 - 200 min and relative amplitude of 0.1 - 0.2. The duration of this oscillation changed from 5 - 7 to 24 hours, depending on a season. The amplitude of fluctuations with other periods was noticeably smaller. The time intervals at which the intensity of incoherent scatter signals varied quasi-periodically in the altitude range from 150 to 300 km were detected. The parameters of these variations were estimated using statistical analysis and bandpass filtering. The periods of wave processes were shown to be of 30 - 120 min, there durations did not exceed of 2 - 6 periods and relative amplitudes usually ranged from 0.03 to 0.15. The phase of oscillations was detected to propagate downwards. The vertical phase velocity of travelling ionospheric disturbances (TIDs) was estimated to be in the range from 50 to 200 m/s and increased with altitude. The observations of the partial solar eclipse on January, 4, 2011 near Kharkiv were used to study the ionospheric parameters in naturally disturbed conditions. The F2-layer critical frequency dropped by a factor of 2.1. The time delay of these variations with respect to the main magnitude of the solar disk obscuration was equal to about 16 minutes. The virtual height of signal reflection near the maximum of the F2-layer ionization increased by 70 km, and the height of the model parabolic layer increased by 10 km. Some decrease in electron density and growth of quasi-periodic variations with periods of about 30 and 60 min were detected at all observable heights during this solar eclipse. The diagnostics of wave processes has been performed during ionospheric modification experiments with EISCAT heater. This heater is at a distance of about 2400 km from Kharkiv incoherent scatter radar. We have detected the TIDs over Kharkiv with periods of 40 - 80 min. The duration of these disturbances has not exceeded 120 - 180 min. The relative amplitudes of the TIDs in electron density ranged from 0.05 to 0.15 and those in electron and ion temperatures were about 0.02 - 0.05. The possible mechanisms for the generation of AGWs and TIDs by high power HF radio waves are sharp thermal gradients at the edge of the heated region and modulation of the ionospheric current systems by periodic high power radio transmission.

Calcium Carbonate Phosphate Binding Ion Exchange Filtration and Accelerated Denitrification Improve Public Health Standards and Combat Eutrophication in Aquatic Ecosystems

PubMed Central

Yanamadala, Vijay

2010-01-01

Cultural eutrophication, the process by which a lake becomes rich in dissolved nutrients as a result of point and nonpoint pollutant sources, is a major cause of the loss of natural lake ecosystems throughout the world. The process occurs naturally in all lakes, but phosphate-rich nutrient runoff from sources such as storm drains and agricultural runoff is a major cause of excess phosphate-induced eutrophication. Especially in Madrona Marsh, one of the last remaining vernal marshes in the greater Los Angeles area, California, cultural eutrophication has become a major problem. In this study, calcium carbonate was found to be an excellent phosphate binder, reducing up to 70% of the phosphates in a given sample of water, and it posed relatively negligent ecological repercussions. This study involved the testing of this principle in both the laboratory and the real ecosystem. A calcium carbonate lacing procedure was first carried out to determine its efficacy in Madrona Marsh. Through this, ammonia was found to interfere with the solubility of calcium carbonate and therefore to be a hindrance to the reduction of phosphate. Therefore, various approaches for reduction of ammonia were tested, including aeration, use of fiber growth media, and plants, mainly Caulerpa verticellata, chosen for it hardiness, primarily in an attempt to increase population of Nitrobacter and Nitrosomonas. All were successful in moderately reducing ammonia levels. In addition, soil sampling, sediment analysis, microscopic plant analysis, microorganism and macroinvertebrate identification, and rate law formulations were conducted. The effect of phosphate and ammonia reduction on the populations of enterobacteria was also an important focus of this experiment. Varying concentrations of phosphate, ammonia, and calcium carbonate in conjunction with phosphate were tested in Madrona Marsh to determine their effects on the populations of enteropathogens on nonspecific blood agar, MacConkey agar, and Hektoen agar. Initial analyses suggest a strong correlation between phosphate concentrations and bacterial populations; a 66% decrease in phosphate resulted in a 35% reduction in bacterial populations and a 45% reduction in enteropathogenic populations. Likewise, a strong correlation was shown between calcium carbonate concentrations and bacterial reduction greater than that which can be attributed to the phosphate reduction alone. This was followed by the construction of various phosphate binding calcium carbonate filters, which used the ion exchange principle, including a spring loading filter, PVC pipe filter, and a galvanized filter. All were tested with the aid of Stoke's law formulation. The experiment was extremely successful in designing a working phosphate-binding and ammonia-reducing filter, and a large-scale agitator-clarifier filter system is currently being planned for construction in Madrona Marsh; this filter will reduce phosphate and ammonia levels substantially in the following years, bringing ecological, economical, and health-related improvements to the overall ecosystem and habitat. PMID:16381147

Dark Skies Awareness Cornerstone Project for the International Year of Astronomy

NASA Astrophysics Data System (ADS)

Walker, C. E.; Pompea, S. M.; Iya Dark Skies Awareness Working Group

2010-12-01

Programs that were part of the International Year of Astronomy 2009 (IYA2009) Dark Skies Awareness (DSA) Cornerstone Project have been successfully implemented around the world to promote social awareness of the effects of light pollution on public health, economic issues, ecological consequences, energy conservation, safety and security, nightscape aesthetics and especially astronomy. In developing the programs, DSA Cornerstone Project found that to influence cultural change effectively — to make people literally look up and see the light — we must make children a main focus, use approaches that offer involvement on many levels, from cursory to committed, and offer involvement via many venues. We must make the programs and resources as turn-key as possible, especially for educators — and provide ways to visualize the problem with simple, easily grasped demonstrations. The programs spanned a wide range; from new media technology for the younger generation, to an event in the arts, to various types of educational materials, to the promotion of dark skies communities, to national and international events and to global citizen science programs. The DSA Cornerstone Project is continuing most all of these programs beyond IYA2009. The International Dark-Sky Association as well as the Starlight Initiative is endorsing and helping to continue with some of the most successful programs from the DSA. The GLOBE at Night campaign is adding a research component that examines light pollution’s affects on wildlife. Dark Skies Rangers activities are being implemented in Europe through the Galileo Teacher Training Program. The new “One Star at a Time” will engage people to protect the night sky through personal pledges and registration of public stargazing areas or StarParks, like the newest one in Italy. The Starlight Initiative’s World Night in Defence of the Starlight will take place on the Vernal Equinox. DSA will again oversee the Dark Skies portion of Global Astronomy Month, in which the International Dark Sky Week will be celebrated. DSA will be collaborating with Belgium’s “Night of Darkness” to endeavor to make that lights out event a more global event. DSA will endeavor to support dark skies education worldwide, as in Northern Ireland. DSA will seek to expand light pollution prevention campaigns like Austria’s. People whose homes meet the criteria of good lighting are invited to put a sticker from Austria’s biggest newspaper in their front window to show their support. DSA also seeks to collaborate with the IAU Office for Astronomy Development. The presentation will focus on the DSA programs during IYA and the sustainability of the DSA programs after IYA, as well as the expansion to other programs worldwide, with particular emphasis in communicating dark skies awareness with the public and its educational value in attracting young people to study science and technology. See www.darkskiesawareness.org for more information on the programs.

A 3D Visualization and Analysis Model of the Earth Orbit, Milankovitch Cycles and Insolation.

NASA Astrophysics Data System (ADS)

Kostadinov, Tihomir; Gilb, Roy

2013-04-01

Milankovitch theory postulates that periodic variability of Earth's orbital elements is a major climate forcing mechanism. Although controversies remain, ample geologic evidence supports the major role of the Milankovitch cycles in climate, e.g. glacial-interglacial cycles. There are three Milankovitch orbital parameters: orbital eccentricity (main periodicities of ~100,000 and ~400,000 years), precession (quantified as the longitude of perihelion, main periodicities 19,000-24,000 years) and obliquity of the ecliptic (Earth's axial tilt, main periodicity 41,000 years). The combination of these parameters controls the spatio-temporal patterns of incoming solar radiation (insolation) and the timing of the seasons with respect to perihelion, as well as season duration. The complex interplay of the Milankovitch orbital parameters on various time scales makes assessment and visualization of Earth's orbit and insolation variability challenging. It is difficult to appreciate the pivotal importance of Kepler's laws of planetary motion in controlling the effects of Milankovitch cycles on insolation patterns. These factors also make Earth-Sun geometry and Milankovitch theory difficult to teach effectively. Here, an astronomically precise and accurate Earth orbit visualization model is presented. The model offers 3D visualizations of Earth's orbital geometry, Milankovitch parameters and the ensuing insolation forcings. Both research and educational uses are envisioned for the model, which is developed in Matlab® as a user-friendly graphical user interface (GUI). We present the user with a choice between the Berger et al. (1978) and Laskar et al. (2004) astronomical solutions for eccentricity, obliquity and precession. A "demo" mode is also available, which allows the three Milankovitch parameters to be varied independently of each other (and over much larger ranges than the naturally occurring ones), so the user can isolate the effects of each parameter on orbital geometry, the seasons, and insolation. Users select a calendar date and the Earth is placed in its orbit using Kepler's laws; the calendar can be started on either vernal equinox (March 20) or perihelion (Jan. 3). Global insolation is computed as a function of latitude and day of year, using the chosen Milankovitch parameters. 3D surface plots of insolation and insolation anomalies (with respect to J2000) are then produced. Insolation computations use the model's own orbital geometry with no additional a-priori input other than the Milankovitch parameter solutions. Insolation computations are successfully validated against Laskar et al. (2004) values. The model outputs other relevant parameters as well, e.g. Earth's radius-vector length, solar declination and day length for the chosen date and latitude. Time-series plots of the Milankovitch parameters and EPICA ice core CO2 and temperature data can be produced. Envisioned future developments include computational efficiency improvements, more options for insolation plots on user-chosen spatio-temporal scales, and overlaying additional paleoclimatological proxy data.

METHANE AND WATER ON MARS: MAPS OF ACTIVE REGIONS AND THEIR SEASONAL VARIABILITY

NASA Astrophysics Data System (ADS)

Villanueva, G. L.; Mumma, M. J.; Novak, R. E.

2009-12-01

We have detected methane on Mars, and measured it simultaneously with water using powerful ground-based telescopes [1, 2]. Its presence in such a strongly oxidized atmosphere (CO2: 95.3%) requires recent release; the ultimate origin of this methane is uncertain, but it could either be abiotic or biotic. On Earth, methane is produced primarily by biology, with a small fraction produced by abiotic means. The sources and sinks of hydrogen-bearing species (e.g., H2O and CH4) on Mars are still poorly known. In particular, the roles of the regolith and the sub-surface hydrogen reservoirs in the Martian water cycle have been broadly studied, but have not been conclusively quantified. If water is being released from the sub-surface or shares a common source with other H-bearing species, we might see correlations among them. Previous searches for such correlations have been precluded because of the lack of simultaneity of the measurements and the intrinsic variability of water on Mars, which is a condensable whose total local abundance is partitioned among several competing phases controlled largely by temperature (ensuring its variability on a variety of time scales, from diurnal to seasonal to epochal). We sampled multiple spectral lines of methane and water vapor on Mars in a campaign spanning seven years (three Mars years; 1999-2006) and sampling three seasons on Mars. Data were ac-quired using long-slit infrared spectrometers: CSHELL (Cryogenic Echelle Spectrograph) at NASA-IRTF (Infrared Telescope Facility) and NIRSPEC (Near Infrared Spectrograph) at Keck 2. These instruments offer spatially-resolved spectra with the high spectral resolving power (λ/δλ ~ 40,000) needed to reduce confusion among telluric, Martian, and Fraunhofer lines (in reflected solar radiation). Since 2005, we greatly improved our data processing algorithms and increased the sensitivity of our measurements by an order of magnitude. Using these new techniques, we detected multiple lines of methane on Mars [1] and discovered two new band sys-tems of isotopic CO2 (at 3.3 and 3.7 μm) that can interfere with signatures of CH4 and HDO [3, 4]. The spectral signatures of these isotopic CO2 transitions may affect searches based on low spectral resolution methods, but they do not affect the searches reported herein. We present the spatial distributions of methane and water-vapor on Mars extracted from our seven-year spectral database, and we compare these with geological parameters. Both gases are depleted at vernal equinox but are enhanced in warm seasons (spring/summer), though often with dissimilar spatial distributions. In Northern Summer we observe a polar outburst of water but no methane, while in Southern Spring we observe release of abundant methane but little water. Regions of methane release appear mainly over ancient terrain (Noachian/Hesperian, older than 3 billion years) known to have a rich hydration history. [1] Mumma et al. (2009) Science 323:1041-1045. [2] Villanueva et al. (2009), submitted. [3] Villanueva et al. (2008) Icarus 195(1):34-44. [4] Villanueva et al. (2008) JQSRT 109(6):883-894.

Monitoring Mars with the Hubble Space Telescope: 1990-1991 observations

NASA Technical Reports Server (NTRS)

James, Philip B.; Clancy, R. Todd; Lee, Steven W.; Martin, Leonard J.; Singer, Robert B.; Smith, ED; Kahn, Ralph A.; Zurek, Richard W.

1994-01-01

Images of Mars obtained using the Planetary Camera on the Hubble Space Telescope during 1990 and 1991 are described and analyzed. Multispectral images of Mars record the martian season between L(sub s) = 348 deg and 60 deg corresponding to late winter and spring in the northern hemisphere. The wavelengths of these observations varied between 230 nm in the ultraviolet and 890 nm in the near infrared. We use these images to discuss atmospheric and polar phenomena, to constrain the aerosols and ozone in the martian atmosphere, and to compare surface albedo features within this data set as well as with previous observations. Two methods are used to constrain the opacity of the martian atmosphere: comparisons of ultraviolet images with atmospheric scattering models and examination of contrast changes of surface features observed at visible wavelengths. Our observations are consistent with a Mars which was quite different from the planet when it was viewed by Viking; we estimate an upper limit of 0.1 for equatorial dust opacity near vernal equinox, compared to values of 0.4 to 0.5 measured in Chryse by Viking Lander 1. Later, at L(sub s) = 60 deg, and upper limit of 0.2 was found for dust in the southern hemisphere. Except for suggestions of local dust activity near the north polar cap in late spring, there was no visual evidence of dust storms on the planet. The Hartley band of ozone is within the F230W filter bandpass, and the 230W/336W ratio is therefore sensitive to ozone. High latitude ozone is observed at a concentration similar to that observed by Mariner 9; a seasonal dependence in ozone concentration was observed with concentration decreasing at northern arctic latitudes and increasing at southern midlatitudes as L(sub s) increases from 350 deg to 60 deg. Despite the difference in dust loading, the behavior of condensate clouds and the recession of the north polar cap are consistent with those observed during Viking years. Late winter images of the north polar region reveal an active north polar hood with a maximum (UV) opacity of about 0.25 near 50 deg latitude; the hood seems to have an annular form, with the central, polar regions having smaller opacity. Clouds observed in the northern hemisphere to the south of the hood boundary are suggestive of fronts similar to those observed during the Mariner 9 mission. A diurnal variation in the hood clouds which is (anti) correlated with the amount of water vapor in the atmosphere is noted. Images were deconvolved using the Richardson-Lucy iterative algorithm to remove the defocussing effects of the spherical aberration of the HST primary. Even when Mars subtended less than 5 arcsec, in May 1991, the images were scientifically useful and comparable to photographic images obtained at opposition. Although the data are subject to the solar pointing constraint for HST, the relatively slow movement of the allowed observation window, which is more than one half martian year, with respect to the martian seasons will permit us to address the question of major variations in the martian atmosphere.

Acoustic insights into the zooplankton dynamics of the eastern Weddell Sea

NASA Astrophysics Data System (ADS)

Cisewski, Boris; Strass, Volker H.

2016-05-01

The success of any efforts to determine the effects of climate change on marine ecosystems depends on understanding in the first instance the natural variations, which contemporarily occur on the interannual and shorter time scales. Here we present results on the environmental controls of zooplankton distribution patterns and behaviour in the eastern Weddell Sea, Southern Ocean. Zooplankton abundance and vertical migration are derived from the mean volume backscattering strength (MVBS) and the vertical velocity measured by moored acoustic Doppler current profilers (ADCPs), which were deployed simultaneously at 64°S, 66.5°S and 69°S along the Greenwich Meridian from February, 2005, until March, 2008. While these time series span a period of full three years they resolve hourly changes. A highly persistent behavioural pattern found at all three mooring locations is the synchronous diel vertical migration (DVM) of two distinct groups of zooplankton that migrate between a deep residence depth during daytime and a shallow depth during nighttime. The DVM was closely coupled to the astronomical daylight cycles. However, while the DVM was symmetric around local noon, the annual modulation of the DVM was clearly asymmetric around winter solstice or summer solstice, respectively, at all three mooring sites. DVM at our observation sites persisted throughout winter, even at the highest latitude exposed to the polar night. Since the magnitude as well as the relative rate of change of illumination is minimal at this time, we propose that the ultimate causes of DVM separated from the light-mediated proximal cue that coordinates it. In all three years, a marked change in the migration behaviour occurred in late spring (late October/early November), when DVM ceased. The complete suspension of DVM after early November is possibly caused by the combination of two factors: (1) increased availability of food in the surface mixed layer provided by the phytoplankton spring bloom, and (2) vanishing diurnal enhancement of the threat from visually oriented predators when the illumination is quasi-continuous during the polar and subpolar summer. Zooplankton abundance in the water column, estimated as the mean MVBS in the depth range 50-300 m, was highest end of summer and lowest mid to end winter on the average annual cycle. However, zooplankton abundance varied several-fold between years and between locations. Based on satellite and in situ data of chlorophyll and sea ice as well as on hydrographic measurements, the interannual and spatial variations of zooplankton mean abundance can be explained by differences in the magnitude of the phytoplankton spring bloom, which develops during the seasonal sea ice retreat. Whereas the vernal ice melt appears necessary to stimulate the blooming of phytoplankton, it is not the determinator of the blooms magnitude, its areal extent and duration. A possible explanation for the limitation of the phytoplankton bloom in some years is top-down control. We hypothesise that the phytoplankton spring development can be curbed by grazing when the zooplankton had attained high abundance by growth during the preceding summer.

Preliminary geologic map of the Murrieta 7.5' quadrangle, Riverside County, California

USGS Publications Warehouse

Kennedy, Michael P.; Morton, Douglas M.

2003-01-01

The Murrieta quadrangle is located in the northern part of the Peninsular Ranges Province and includes parts of two structural blocks, or structural subdivisions of the province. The quadrangle is diagonally crossed by the active Elsinore fault zone, a major fault zone of the San Andreas fault system, and separates the Santa Ana Mountains block to the west from the Perris block to the east. Both blocks are relatively stable internally and within the quadrangle are characterized by the presence of widespread erosional surfaces of low relief. The Santa Ana Mountains block, in the Murrieta quadrangle, is underlain by undifferentiated, thick-layered, granular, impure quartzite and well-layered, fissile, phyllitic metamorphic rock of low metamorphic grade. Both quartzite and phyllitic rocks are Mesozoic. Unconformably overlying the metamorphic rocks are remnants of basalt flows having relatively unmodified flow surfaces. The age of the basalt is about 7-8Ma. Large shallow depressions on the surface of the larger basalt remnants form vernal ponds that contain an endemic flora. Beneath the basalt the upper part of the metamorphic rocks is deeply weathered. The weathering appears to be the same as the regional Paleocene saprolitic weathering in southern California. West of the quadrangle a variable thickness sedimentary rock, physically resembling Paleogene rocks, occurs between the basalt and metamorphic rock. Where not protected by the basalt, the weathered rock has been removed by erosion. The dominant feature on the Perris block in the Murrieta quadrangle is the south half of the Paloma Valley ring complex, part of the composite Peninsular Ranges batholith. The complex is elliptical in plan view and consists of an older ring-dike with two subsidiary short-arced dikes that were emplaced into gabbro by magmatic stoping. Small to large stoped blocks of gabbro are common within the ring-dikes. A younger ring-set of hundreds of thin pegmatite dikes occur largely within the central part of the complex. These pegmatite dikes were emplaced into a domal fracture system, apparently produced by cauldron subsidence, and include in the center of the complex, a number of flat-floored granophyre bodies. The granophyre is interpreted to be the result of pressure quenching of pegmatite magma. Along the eastern edge of the quadrangle is the western part of a large septum of medium metamorphic grade Mesozoic schist. A dissected basalt flow caps the Hogbacks northeast of Temecula, and represents remnants of a channel filling flow. Beneath the basalt is a thin deposit of stream gravel. Having an age of about 10Ma, this basalt is about 2-3Ma older than the basalt flows in the Santa Ana Mountains. The Elsinore fault zone forms a complex of pull-apart basins. The west edge of the fault zone, the Willard Fault, is marked by the high, steep eastern face of the Santa Ana Mountains. The east side of the zone, the Wildomar Fault, forms a less pronounced physiographic step. In the center of the quadrangle a major splay of the fault zone, the Murrieta Hot Springs Fault, strikes east. Branching of the fault zone causes the development of a broad alluvial valley between the Willard Fault and the Murrieta Hot Springs Fault. All but the axial part of the zone between the Willard and Wildomar Faults consist of dissected Pleistocene sedimentary units. The axial part of the zone is underlain by Holocene and latest Pleistocene sedimentary units.

Bright Perseids 2007-2012 statistics. Estimation of collision risks in circumterrestrial space

NASA Astrophysics Data System (ADS)

Murtazov, A.

2013-09-01

Bright meteors are of serious hazard for space vehicles. In the Persieds shower these are the meteors brighter than 0m [2]. During 2007-2012 we conducted wide-angle CCD observations of bright Perseids [3-5]. Observations were performed near Ryazan, Russia, (= 54.467 N, λ=39.750 E, H=200 m) using a Watec 902H camera and a Computar T2314FICS lens with the effective FOV of 140×100 arc degrees directed towards the local zenith. The sky control and meteor detection were provided using a Pinnacle Media Center EN or the Contrast as a grabber and an Intel Core.2 CPU processor, 1.83GHz, 500Mb RAM. Our results as compared to the visual meteors total number (IMO) are shown in Fig. 1. The averaged Perseids maximum lies within the solar longitudes 140.00-140.25 and here the average total shower spatial density is (80±6)·10-9km-3. The bright Perseids average spatial density maximum is about (6±2) 10-9km-3. The bright Perseids average percentage in the shower is calculated as the integrals ratio under the curves in Fig. 1 and is equal to 5% for the presented range of solar longitudes. It is natural to expect that the space densities of meteoroids decrease exponentially from the maximum [1]: D = D0exp{-B|λ-λ0|}, (1) where: D0 is the maximum meteor spatial density near the solar longitude λ0 and B - the factor determined empirically from observations. The meteoroid flux F is equal to the number of particles passing through the elementary area per time unit: F(λ) = D(λ)·v, (2) where: v - is the meteor shower velocity. During the Perseids' maximum (D0=6·10-9km-3 and v=59km/s) the bright meteoroid flux was equal to F (3.8±1.1)10-7km-2s-1, which corresponds to the hour rate HR15 for our camera FOV. The collision risk R here amounted to one collision per month on average with a 1 sq. km plane located normal to the meteor shower. An artificial space object rotating around the Earth constantly changes its orientation relative to the meteor shower, the Sun, and a ground-based observer. From time to time, the Earth occults the satellite from meteoroids. The number of collisions between this meteor shower's dangerous meteoroids and the satellite during the time Т of its flight around the Earth is 6]: N = K1·K2·K3·S·F (λ)·T. (3) Here К1 accounts for the Earth's geliocentric position in the current season relative to the meteor shower radiant. К2 accounts for the satellite's plane surfaces relative to the meteor shower radiant. К3 is defined by the satellite's orbit parameters. Calculations are done in the ecliptic reference system (Fig. 2), wherein a satellite can be considered located in the ecliptic plane. In this figure: N is the normal to the satellite's surface; , , Е - directions to the vernal equinoctial point, the Sun and the Earth; λR, λ, - ecliptic longitudes of the meteor radiant and the Sun; λE - the ecliptic satellitecentric Earth longitude; bR and bE - consequent ecliptic latitudes of meteor shower radiant and the Earth.

The occurrence of spring forms in tetraploid Timopheevi wheat is associated with variation in the first intron of the VRN-A1 gene.

PubMed

Shcherban, Andrey Borisovich; Schichkina, Aleksandra Aleksandrovna; Salina, Elena Artemovna

2016-11-16

Triticum araraticum and Triticum timopheevii are tetraploid species of the Timopheevi group. The former includes both winter and spring forms with a predominance of winter forms, whereas T. timopheevii is considered a spring species. In order to clarify the origin of the spring growth habit in T. timopheevii, allelic variability of the VRN-1 gene was investigated in a set of accessions of both tetraploid species, together with the diploid species Ae. speltoides, presumed donor of the G genome to these tetraploids. The promoter region of the VRN-A1 locus in all studied tetraploid accessions of both T. araraticum and T. timopheevii represents the previously described allele VRN-A1f with a 50 bp deletion near the start codon. Three additional alleles were identified namely, VRN-A1f-del, VRN-A1f-ins and VRN-A1f-del/ins, which contained large mutations in the first (1 st ) intron of VRN-A1. The first allele, carrying a deletion of 2.7 kb in a central part of intron 1, occurred in a few accessions of T. araraticum and no accessions of T. timopheevii. The VRN-A1f-ins allele, containing the insertion of a 0.4 kb MITE element about 0.4 kb upstream from the start of intron 1, and allele VRN-A1f-del/ins having this insertion coupled with a deletion of 2.7 kb are characteristic only for T. timopheevii. Allelic variation at the VRN-G1 locus includes the previously described allele VRN-G1a (with the insertion of a 0.2 kb MITE in the promoter) found in a few accessions of both tetraploid species. We showed that alleles VRN-A1f-del and VRN-G1a have no association with the spring growth habit, while in all accessions of T. timopheevii this habit was associated with the dominant VRN-A1f-ins and VRN-A1f-del/ins alleles. None of the Ae. speltoides accessions included in this study had changes in the promoter or 1 st intron regions of VRN-1 which might confer a spring growth habit. The VRN-1 promoter sequences analyzed herein and downloaded from databases have been used to construct a phylogram to assess the time of divergence of Ae. speltoides in relation to other wheat species. Among accessions of T. araraticum, the preferentially winter predecessor of T. timopheevii, two large mutations were found in both VRN-A1 and VRN-G1 loci (VRN-A1f-del and VRN-G1a) that were found to have no effect on vernalization requirements. Spring tetraploid T. timopheevii had one VRN-1 allele in common for two species (VRN-G1a), and two that were specific (VRN-A1f-ins, VRN-A1f-del/ins). The latter alleles include mutations in the 1 st intron of VRN-A1 and also share a 0.4 kb MITE insertion near the start of intron 1. We suggested that this insertion resulted in a spring growth habit in a progenitor of T. timopheevii which has probably been selected during subsequent domestication. The phylogram constructed on the basis of the VRN-1 promoter sequences confirmed the early divergence (~3.5 MYA) of the ancestor(s) of the B/G genomes from Ae. speltoides.

Land development in Massachusetts: Its effect on the environment within Essex and Middlesex counties from 1990 to 2007

NASA Astrophysics Data System (ADS)

Tardie, Peter Sean

Since the 1970's urban centers in and surrounding Essex and Middlesex Counties in Massachusetts have expanded and proliferated into adjacent communities. This expansion has led to the conversion of land for housing, businesses, schools, recreation, and parks, placing significant strain on existing land cover, land use, and available natural resources. Mounting growth pressures and a reduction of undeveloped land have raised serious concerns as cropland and forest fragmentation, wetland destruction, protected open-space infringement, pollution, and systematic losses of rural conditions have become obvious. To monitor development, the post-classification change detection method was applied to Landsat Thematic Mapper (TM) satellite data and GIS was used to detect, quantity, and document the extent of development and its effect on the environment and to assess and quantify the demographic changes that occurred within the counties from 1990 to 2007. Classification of the 1990 image resulted in 217 clusters and 214 clusters for the 2007 image The overall accuracy achieved for the 1990 image classification was 87.3% with a KHAT value of 0.848, and the overall accuracy for the 2007 classification was 86.27% with a KHAT value of 0.840. From 1990 to 2007 land cover change occurred primarily along major transportation corridors. The post-classification change detection results indicate that Essex and Middlesex County combined gained 23,435.66 "new" acres of land development from 1990 to 2007 through a loss and change in acreage from the Bareland, Forest, Grassland, Water, and Wetland land cover class categories. Results indicate that there was an approximate 0.56% overall (net) increase of newly developed land areas within the 1990 and 2007 image classifications from 415.46 acres or 0.64 square miles. In addition, there was a substantial decrease (-40.0%) within the grassland category. Land development was responsible for a portion of the decrease of grasslands (-13.63%), which occurred mostly within Middlesex County. Results also indicate that "new" land development occurred within several Commonwealth of Massachusetts designated environmentally-sensitive areas: 722 acres in areas of critical environmental concern, 670 acres in priority habitats of rare species, 1,092 acres in living waters core habitats and critical supporting watersheds, 1,318 acres in protected and recreational open spaces, and within 0-1000 feet of 600 certified vernal pools. In addition, several rare or imperiled species inhabiting these areas may have been adversely affected by land development through habitat loss, change, or fragmentation, and/or passage corridor disruptions. A GIS comparison of the "new" land development acreages and census demographic statistics within Essex and Middlesex County cities and towns during this period indicate that communities with more families with children exhibited more land development, and communities with higher median household income exhibited less land development. Land change detection over the 17-year period indicated encroachment of development in areas of environmental concern, but level of development varied by socio-demographic factors. This study also illustrated that the combined use of remotely sensed data, Geographic Information Systems (GIS) technology, and demographic data are effective for use as a diagnostic tool and/or base to be built upon to explore associations, indicators, or drivers which may influence land cover change and its effects on existing environmental conditions in areas exhibiting change. In addition, this study provided awareness to ancillary research where scientific guidelines were derived for the protection of specific wildlife habitats and resident species. Lastly, this study presented several land cover modeling and web deployed data dissemination tools for the dissertation results as well as provided a conceptual framework for the successful adoption and implementation of these tools for organizations engaged in natural resource planning and management.

Obituary: Seth L. Tuttle (1931-2011)

NASA Astrophysics Data System (ADS)

Eriksson, Samantha

2011-12-01

Seth L. Tuttle, 80, a retired physicist who worked 25 years at the National Science Foundation (NSF) died on August 8, 2011, at the Dove House hospice in Westminster, MD, from complications of a fall that he suffered while visiting his son in Denver, in December, 2010 and that left him a quadriplegic. Seth was a native of Spokane, Washington. In High School he was student body president, "Thespian of the Year," played football, basketball and tennis and graduated as the valedictorian, winning several scholarships, including one from the National Honor Society. He attended the University of Idaho but dropped out and in 1951 enlisted in the Army. He graduated from the Infantry Candidate School and Paratrooper Jump School and served during the Korean War, a tour of duty he was very proud of and of which he had many memories that he liked to share. At the end of the Korean War he got out of the Army, and went back to school, finishing with a degree in Math in 1955 at the University of Washington. He next attended graduate school at the U of Michigan, majoring in astronomy, but interrupted his studies once again and went to work for the Michigan Institute of Science and Technology (MIST). At MIST he headed the Launch Phase Analysis group of the Ballistic Missile Radiation Analysis Center, analyzing models of radiation from ballistic missiles for the US Early Warning System. Later he became Deputy Director of a project that designed, built and operated an observatory on Maui, Hawaii, dedicated to track missiles and satellites. In 1971 Seth moved to Washington, DC with his family, to work at the Institute for Defense Analysis on missile defense and optical and infrared physics matters of interest to the Defense Department. In 1974, in a complete turnaround from defense oriented work, he went to the NSF as Program Manager for Energy Conservation and Energy Systems research. A few years later when the Department of Energy (DoE) was established, NSF's energy related programs were transferred to DoE. Seth chose to stay at the NSF, where he spent the rest of his working life. Staying at the NSF allowed him to return to his first scientific interest, astronomy. He became a Program Manager in NSF's Division of Astronomical Sciences (AST), serving at various times as Program Manager for the National Radio Astronomy Observatory (NRAO), the National Astronomy and Ionosphere Center (NAIC- Arecibo Obs.) and the National Optical Astronomy Observatory (NOAO). Seth liked to say that in order to show that managers have to make changes to show that they manage, regardless if this is necessary or not. His own management philosophy ran exactly opposite to this statement, however, intervening only minimally in the affairs of the National Centers and only when he thought that it was absolutely necessary to do so. Seth was an extremely sociable and gregarious person, well known to many and much liked throughout the Foundation. He put a lot of effort and enthusiasm into organizing AST's vernal equinox party for many years, and he invariably acted as Master of Ceremonies, distributing various awards to those who worked with and helped AST during the year. The most coveted of these, that Seth made famous, was the VLA mashed penny award that consisted of a penny mashed flat by one of the VLA antennas, attached to a certificate mentioning the good work of the recipient in favor of astronomy. He kept a good supply of these in his office in preparation for the party! Seth also loved to act as Santa Claus, and at one memorable NSF Christmas Party, he, along with a couple of other NSF staff members, performed a musical number in drag to great success! Seth was a lifelong tennis player and started a group at the Carderock Springs Tennis and Swim club, with strange rules, called "Kabuki Tennis" that played under all weather conditions. He was a cigar aficionado and loved wine, beer and good food. Seth's political views tended to be liberal and he enjoyed teasing his more conservative colleagues about their views, but did so always in a good natured manner. He was a great story teller and loved a good joke, especially a dirty one. In retirement, he organized a monthly lunch for retired men in his neighborhood. Whenever he found himself close to the NSF he liked to have lunch with his former colleagues, enjoying the latest astronomy related gossip. Seth was very close to his children and grandchildren. He is survived by a son, Russell Tuttle of Lakewood, CO and a daughter, Samantha Eriksson of New Windsor, MD and four grandchildren. His wife of 49 years, the former Dorothea Leonard, died in 2007.

PREFACE: 1st METECH workshop - From deep-sea to coastal zones: Methods and Techniques for studying Palaeoenvironments

NASA Astrophysics Data System (ADS)

Veiga-Pires, C.; St-Onge, G.

2008-10-01

Reconstructing past climate and past ocean circulation demands the highest possible precision and accuracy which urges the scientific community to look at different sediment records such as the ones from coastal zones to deep-sea with a more complete set of technical and methodological tools. However, the information given by each tool varies in precision, accuracy and in significance according to their environmental settings. It is therefore essential to compare tools. With that in mind, and as part of the International year of Planet Earth, a workshop entitled `From deep-sea to coastal zones: Methods and Techniques for studying palaeoenvironments' took place in Faro (Portugal), from 25-29 February 2008 in order to: present several methods and techniques that can be used for studying sediments from deep-sea to coastal zones, namely for reconstructing palaeoenvironments in order to document past climatic changes and short to long-term environmental processes; allow cross experience between different fields and specialties, either from deep-sea to coastal zones or from micropaleontology to geochemistry; give the opportunity to students from different universities and countries to attend the workshop; publish a special volume on the presented methods and techniques during the workshop. The workshop was organized in four non-parallel sessions dealing with the use of micropaleontology, isotopes, biogeochemistry and sedimentology, as tools for palaeoenvironmental studies. The present IOP Conference Series: Earth and Environmental Science proceedings reflect this organization and papers are published in each theme. The papers are either short reviews or case studies and are highlighted below. The remains of microorganisms found in sediments are the main proxies used in micropaleontological studies. However, the link between fossilized remains and their living origin is not easy to reconstruct only based on the geologic/sedimentary record. Accordingly, Barbosa presents a review of the actual knowledge of living phytoplankton dynamics and the processes, or environmental conditions, which could contribute to the production of fossilized biogenic remains. In the next paper, de Vernal presents a review, based on several case studies, on how palynological fossils observed in sediments are used in tracing biogenic fluxes, characterizing sedimentary environments, or even reconstructing hydrographical conditions and productivity. The two other papers presented in the micropaleontological proxy section are case studies on the use of dinoflagellates (Rochon) and calcareous plankton remains (Guerreiro et al), respectively, to better understand their local or regional environmental living characteristics ant therefore their specific interpretation for palaeoenvironmental reconstruction at a regional scale. Isotopic proxies can be used either as provenance tracers or as chronometers of different processes. Once again, each study can provide a very specific framework of the proxies' use and it is very important to know and evaluate the limits of these tools in each environment and/or type of analyzed material. Accordingly, the two first articles deal with the study of organic carbon either by carbon and oxygen stable isotopes (Hélie) or by radiocarbon (Mollhenhauer and Rethemeyer) analysis. The two other articles in this section deal with the use of radioisotopes. Ghaleb reviews the methods for measuring short-lived radiosisotopes in sediments, giving examples of their use for estimating recent sedimentary accumulation rates; whereas Hillaire-Marcel reviews the potential use of U-series isotopes as radiochronometers in biogenic carbonates. Geochemistry groups more than one field of expertise. However, in the present section, inorganic geochemistry is not treated and both articles present work on a very specific, and at the same time very complex, compound of the organic matter realm: black carbon. As such, Veilleux et al present a density fractionation method for isolating the small quantities of soot-like and graphitic material usually found in natural samples, whereas González-Vila et al. illustrate the potential of the combined use of analytical pyrolysis and solid state 13C NMR to determine the presence of black carbon and to characterize the refractory organic matter in marine sediments from the Gulf of Cadiz (Spain). In the last section, two papers are presented and discuss sedimentological proxies. In their paper, using diffuse spectral reflectance data, Veiga-Pires and Mestre try to determine if `twinned cores' (or paired cores) can be used as duplicate records to increase the volume of sediments collected in the field, whereas Drago et al discuss the use of fish remains in sediments for the reconstruction of paleoproductivity. Each of the above papers benefited from the constructive comments of at least two reviewers and we wish to sincerely thank the reviewers for their timely evaluation. We also thank the participants, volunteers and organizers of the workshop for their implication, making this first workshop on Methods and Techniques for studying palaeoenvironments (METECH) a success. The workshop and this proceeding would not have been possible without the financial and logistical support of GEOTOP, CIMA, the Portuguese Foundation for Science and Technology (FACC07/1/1315) and IOP Conference Series: Earth and Environmental Science. The second METECH workshop should take place in Canada in the forthcoming year. Conference banner