CERES Monthly Gridded Single Satellite TOA and Surfaces/Clouds (SFC) data in HDF (CER_SFC_TRMM-PFM-VIRS_Beta4)

NASA Technical Reports Server (NTRS)

Wielicki, Bruce A. (Principal Investigator)

The Monthly Gridded TOA/Surface Fluxes and Clouds (SFC) product contains a month of space and time averaged Clouds and the Earth's Radiant Energy System (CERES) data for a single scanner instrument. The SFC is also produced for combinations of scanner instruments. All instantaneous shortwave, longwave, and window fluxes at the Top-of-the-Atmosphere (TOA) and surface from the CERES SSF product for a month are sorted by 1-degree spatial regions and by the local hour of observation. The mean of the instantaneous fluxes for a given region-hour bin is determined and recorded on the SFC along with other flux statistics and scene information. These average fluxes are given for both clear-sky and total-sky scenes. The regional cloud properties are column averaged and are included on the SFC. [Location=GLOBAL] [Temporal_Coverage: Start_Date=1998-01-01; Stop_Date=2000-03-31] [Spatial_Coverage: Southernmost_Latitude=-90; Northernmost_Latitude=90; Westernmost_Longitude=-180; Easternmost_Longitude=100] [Data_Resolution: Latitude_Resolution=1 degree; Longitude_Resolution=1 degree; Horizontal_Resolution_Range=100 km - < 250 km or approximately 1 degree - < 2.5 degrees; Temporal_Resolution=1 hour; Temporal_Resolution_Range=Hourly - < Daily].

TRMM and its Connection to the Global Water Cycle

NASA Technical Reports Server (NTRS)

Kummerow, Christian; Hong, Ye

1999-01-01

The importance of quantitative knowledge of tropical rainfall, its associated latent heating and variability is summarized in the context of the global hydrologic cycle. Much of the tropics is covered by oceans. What land exists, is covered largely by rainforests that are only thinly populated. The only way to adequately measure the global tropical rainfall for climate and general circulation models is from space. The Tropical Rainfall Measuring Mission (TRMM) orbit is inclined 35 degrees leading to good sampling in the tropics and a rapid precession to study the diurnal cycle of precipitation. The precipitation instrument complement consists of the first rain radar to be flown in space (PR), a multi-channel passive microwave sensor (TMI) and a five-channel VIS/IR (VIRS) sensor. The precipitation radar operates at a frequency of 13.6 GHz. The swath width is 220 km, with a horizontal resolution of 4 km and the vertical resolution of 250 m. The minimum detectable signal from the precipitation radar has been measured at - 17 dBZ. The TMI instrument is designed similar to the SSM/I with two important changes. The 22.235 GHz water vapor absorption channel of the SSM/I was moved to 21.3 GHz in order to avoid saturation in the tropics and 10.7 GHz V&H polarized channels were added to expand the dynamic range of rainfall estimates. The resolution of the TMI varies from 4.6 km at 85 GHz to 36 km at 10.7 GHz. The visible and infrared sensor (VIRS) measures radiation at 0.63, 1.6, 3.75, 10.8 and 12.0 microns. The spatial resolution of all five VIRS channels is 2 km at nadir. In addition to the three primary rainfall instruments, TRMM will also carry a Lightning Imaging Sensor (LIS) and a Clouds and the Earth's Radiant Energy System (CERES) instrument. This presentation will focus primarily on the advances in our understanding of tropical rain systems needed to interpret the TRMM data. Global averages, as well as case studies from TRMM radar (PR), the TRMM Microwave Imager (TMI) and Visible and Infrared Sensor (VIRS) will be presented. Comparisons and contrasts among the different sensors will be drawn. Results will also be compared to previous rainfall climatologies generated from the SSM/I instrument. In particular this paper will focus on the synergy between the TRMM radar and passive microwave radiometer and what we have learned from its synergy.

TRMM and Its Connection to the Global Water Cycle

NASA Technical Reports Server (NTRS)

Kummerow, Chiristian

1999-01-01

The importance of quantitative knowledge of tropical rainfall, its associated latent heating and variability is summarized in the context of the global hydrologic cycle. Much of the tropics is covered by oceans. What land exists, is covered largely by rainforests that are only thinly populated. The only way to adequately measure the global tropical rainfall for climate and general circulation models is from space. The TRMM orbit is inclined 35 degrees leading to good sampling in the tropics and a rapid precession to study the diurnal cycle of precipitation. The precipitation instrument complement consists of the first rain radar to be flown in space (PR), a multi-channel passive microwave sensor (TMI) and a five-channel VIS/IR (VIRS) sensor. The precipitation radar operates at a frequency of 13.6 GHz. The swath width is 220 km, with a horizontal resolution of 4 km and the vertical resolution of 250 m. The minimum detectable signal from the precipitation radar has been measured at 17 dBZ. The TMI instrument is designed similar to the SSM/I with two important changes. The 22.235 GHz water vapor absorption channel of the SSM/I was moved to 21.3 GHz in order to avoid saturation in the tropics and 10.7 GHz V&H polarized channels were added to expand the dynamic range of rainfall estimates. The resolution of the TMI varies from 4.6 km at 85 GHz to 36 km at 10.7 GHz. The visible and infrared sensor (VIRS) measures radiation at 0.63, 1.6, 3.75, 10.8 and 12.0 microns. The spatial resolution of all five VIRS channels is 2 km at nadir. In addition to the three primary rainfall instruments, TRMM will also carry a Lightning Imaging Sensor (LIS) and a Clouds and the Earth's Radiant Energy System (CERES) instrument. This presentation will focus primarily on the advances in our understanding of tropical rain systems needed to interpret the TRMM data. Global averages, as well as case studies from TRMM radar (PR), the TRMM Microwave Imager (TMI) and Visible and Infrared Sensor (VIRS) will be presented. Comparisons and contrasts among the different sensors will be drawn. Results will also be compared to previous rainfall climatologies generated from the SSM/I instrument. In particular this paper will focus on the synergy between the TRMM radar and passive microwave radiometer and what we have learned from is synergy.

The Atlas of Vesta Spectral Parameters derived from Dawn/VIR data

NASA Astrophysics Data System (ADS)

Frigeri, A.; De Sanctis, M. C.; Ammannito, E.; Tosi, F.; Zambon, F.; Capaccioni, F.; Capria, M. T.; Palomba, E.; Longobardo, A.; Fonte, S.; Giardino, M.; Magni, G.; Jaumann, R.; Raymond, C. A.; Russell, C. T.

2013-09-01

The Dawn mission mapped Vesta from three different orbital heights during Survey orbit (2700 km altitude), HAMO (High Altitude Mapping Orbit, 700 km altitude), and LAMO (Low Altitude Mapping Orbit, 210 km altitude) [1]. From these orbits the Dawn's Visible and Infrared Mapping Spectrometer (VIR) acquired infrared and visible spectra from 0.2 to 5 microns, sampled in 864 channels with a spatial resolution reaching about 150 m/pixel. Studies of the comparison of spectra from remote sensed data and spectra from laboratory allows to synthesize spectral parameters, which can be combined to identify specific physical and compositional states. VIR spectra of Vesta, stored in about 4300 Planetary Data System (PDS) cubes, have been analyzed to derive spectral parameters, each of which is diagnostic of the associated mineralogy on the surface of the asteroid being observed [2]. Maps of spectral parameters show terrain units compositions in their stratigraphic context. Band centers and band depths are among the most important diagnostic parameters of the mineralogy in a spectrum. In most pyroxenes and in the basaltic achondrites there is a strong correlation between the position of BI center and BII center and the associated mineralogy. For example, orthopyroxene bands shift towards longer wavelengths with increasing amounts of iron, whereas clinopyroxene bands shift towards longer wavelengths with increasing calcium content. Band depth is related to scattering effects, thus can be related to the physical state of the material.

Possible Mg II emission in B stars observed from Copernicus

NASA Technical Reports Server (NTRS)

Kondo, Y.; Whaley, R. S.; Modisette, J. L.; Dufour, R. J.

1976-01-01

Four B stars, Alpha Vir, Beta Cen, Alpha Gru, and Beta Lib, were observed with the Copernicus spectrometer at a resolution of 0.1 A in order to investigate the presence of chromospheric emission. Emission was observed in Beta Cen and Alpha Gru, while the results for Alpha Vir and Beta Lib were inconclusive.

CERES Monthly TOA and SRB Averages (SRBAVG) data in HDF-EOS Grid (CER_SRBAVG_TRMM-PFM-VIRS_Edition2B)

NASA Technical Reports Server (NTRS)

Wielicki, Bruce A. (Principal Investigator)

The Monthly TOA/Surface Averages (SRBAVG) product contains a month of space and time averaged Clouds and the Earth's Radiant Energy System (CERES) data for a single scanner instrument. The SRBAVG is also produced for combinations of scanner instruments. The monthly average regional flux is estimated using diurnal models and the 1-degree regional fluxes at the hour of observation from the CERES SFC product. A second set of monthly average fluxes are estimated using concurrent diurnal information from geostationary satellites. These fluxes are given for both clear-sky and total-sky scenes and are spatially averaged from 1-degree regions to 1-degree zonal averages and a global average. For each region, the SRBAVG also contains hourly average fluxes for the month and an overall monthly average. The cloud properties from SFC are column averaged and are included on the SRBAVG. [Location=GLOBAL] [Temporal_Coverage: Start_Date=1998-02-01; Stop_Date=2000-03-31] [Spatial_Coverage: Southernmost_Latitude=-90; Northernmost_Latitude=90; Westernmost_Longitude=-180; Easternmost_Longitude=180] [Data_Resolution: Latitude_Resolution=1 degree; Longitude_Resolution=1 degree; Horizontal_Resolution_Range=100 km - < 250 km or approximately 1 degree - < 2.5 degrees; Temporal_Resolution=1 month; Temporal_Resolution_Range=Monthly - < Annual].

Possible Mg ii emission in B stars observed from Copernicus

DOE Office of Scientific and Technical Information (OSTI.GOV)

Kondo, Y.; Modisette, J.L.; Dufour, R.J.

1976-05-15

Four B stars, ..cap alpha.. Vir, ..beta.. Cen, ..cap alpha.. Gru, and ..beta.. Lib, were observed with the Copernicus Princeton Telescope Spectrometer at a resolution of 0.1 A in order to investigate the presence of chromospheric emission. Emission was observed in ..beta.. Cen and ..cap alpha.. Gru, while the results for ..cap alpha.. Vir and ..beta.. Lib were inconclusive. (AIP)

CERES Clouds and Radiative Swath (CRS) data in HDF (CER_CRS_TRMM-PFM-VIRS_Edition2C)

NASA Technical Reports Server (NTRS)

Wielicki, Bruce A. (Principal Investigator)

The Clouds and Radiative Swath (CRS) product contains one hour of instantaneous Clouds and the Earth's Radiant Energy System (CERES) data for a single scanner instrument. The CRS contains all of the CERES SSF product data. For each CERES footprint on the SSF the CRS also contains vertical flux profiles evaluated at four levels in the atmosphere: the surface, 500-, 70-, and 1-hPa. The CRS fluxes and cloud parameters are adjusted for consistency with a radiative transfer model and adjusted fluxes are evaluated at the four atmospheric levels for both clear-sky and total-sky. [Location=GLOBAL] [Temporal_Coverage: Start_Date=1998-01-01; Stop_Date=2000-03-31] [Spatial_Coverage: Southernmost_Latitude=-90; Northernmost_Latitude=90; Westernmost_Longitude=-180; Easternmost_Longitude=180] [Data_Resolution: Temporal_Resolution=1 hour; Temporal_Resolution_Range=Hourly - < Daily].

ALMA observation of Ceres' Surface Temperature.

NASA Astrophysics Data System (ADS)

Titus, T. N.; Li, J. Y.; Sykes, M. V.; Ip, W. H.; Lai, I.; Moullet, A.

2016-12-01

Ceres, the largest object in the main asteroid belt, has been mapped by the Dawn spacecraft. The mapping includes measuring surface temperatures using the Visible and Infrared (VIR) spectrometer at high spatial resolution. However, the VIR instrument has a long wavelength cutoff at 5 μm, which prevents the accurate measurement of surface temperatures below 180 K. This restricts temperature determinations to low and mid-latitudes at mid-day. Observations from the Atacama Large Millimeter/submillimeter Array (ALMA) [1], while having lower spatial resolution, are sensitive to the full range of surface temperatures that are expected at Ceres. Forty reconstructed images at 75 km/beam resolution were acquired of Ceres that were consistent with a low thermal inertia surface. The diurnal temperature profiles were compared to the KRC thermal model [2, 3], which has been extensively used for Mars [e.g. 4, 5]. Variations in temperature as a function of local time are observed and are compared to predictions from the KRC model. The model temperatures are converted to radiance (Jy/Steradian) and are corrected for near-surface thermal gradients and limb effects for comparison to observations. Initial analysis is consistent with the presence of near-surface water ice in the north polar region. The edge of the ice table is between 50° and 70° North Latitude, consistent with the enhanced detection of hydrogen by the Dawn GRaND instrument [6]. Further analysis will be presented. This work is supported by the NASA Solar System Observations Program. References: [1] Wootten A. et al. (2015) IAU General Assembly, Meeting #29, #2237199 [2] Kieffer, H. H., et al. (1977) JGR, 82, 4249-4291. [3] Kieffer, Hugh H., (2013) Journal of Geophysical Research: Planets, 118(3), 451-470. [4] Titus, T. N., H. H. Kieffer, and P. N. Christensen (2003) Science, 299, 1048-1051. [5] Fergason, R. L. et al. (2012) Space Sci. Rev, 170, 739-773[6] Prettyman, T. et al. (2016) LPSC 47, #2228.

Spectral modeling of Ceres VIR data from Dawn: Method and Result

NASA Astrophysics Data System (ADS)

Raponi, Andrea; De Sanctis, M. C.; Ciarniello, M.; Carrozzo, F. G.; Ammannito, E.; Capaccioni, F.; Capria, M. T.; Frigeri, A.; Fonte, S.; Giardino, M.; Longobardo, A.; Magni, G.; Marchi, S.; Palomba, E.; Pieters, C. M.; Tosi, F.; Turrini, D.; Zambon, F.; Raymond, C. A.; Russell, C. T.

2015-11-01

The Dawn spacecraft [1] is at Ceres, the closest of the IAU-defined dwarf planets to the Sun. This work focuses on the interpretation of Ceres’ surface composition based on the data from the VIR instrument [2] onboard Dawn. The Visible InfraRed (VIR) mapping spectrometer combines high spectral and spatial resolution in the VIS (0.25-1mm) and IR (1-5mm) spectral ranges. VIR will provide a very good coverage of the surface during its orbital mission at Ceres.In order to model the measured spectra, we have utilized Hapke's radiative transfer model [3], which allows estimation of the mineral composition, the relative abundances of the spectral end-members, and the grain size. Optical constants of the spectral end-members are approximated by applying the methodology described in [4] to IR spectra reflectance obtained from the RELAB database.The observed spectra of Ceres surface are affected by a thermal emission component that prevents direct comparison with laboratory data at longer wavelengths. Thus to model the whole wavelength range measured by VIR, the thermal emission is modeled together with the reflectance. Calibrated spectra are first cleaned by removing artefacts. A best fit is obtained with a least square optimization algorithm. For further details on the method, see reference [5].The range 2.5 - 2.9 μm is severely hindered by Earth's atmosphere, but it contains a strong absorption band that dominates the IR Ceres’ spectrum. Thanks to the VIR instrument we can obtain a compositional model for the whole IR range [6]. We used several different combinations of materials hypothesized to be representative of the Ceres’ surface including phyllosilicates, ices, carbonaceous chondrites and salts. The results will be discussed.Acknowledgements This work is supported by the Italian Space Agencies and NASA. Enabling contributions from the Dawn Instrument, Operations, and Science Teams are gratefully acknowledged.Reference[1] Russell et al., Space Sci. Rev., 163, 3-23, 2011.[2] De Sanctis et al., Space Sci. Rev., 163, 329-369, 2011.[3] Hapke, Cambridge Univ. Press., 1993, 2012.[4] Carli et al., Icarus, 235, 207-219, 2014.[5] Raponi, PhD Thesis, arXiv:1503.08172, 2015.[6] De Sanctis et al., Nature submitted 2015.

Physical Orbit for Lam Vir and Testing of Stellar Evolution Models

NASA Astrophysics Data System (ADS)

Zhao, M.; Monnier, J. D.; Torres, G.; Pedretti, E.; Millan-Gabet, R.; Berger, J.-P.; Traub, W. A.; Schloerb, F. P.

2005-12-01

Lambda Virginis is a well-known double-lined spectroscopic Am binary with the interesting property that both stars are very similar in abundance but one is sharp-lined and the other is broad-lined. The differing rotation rates and the unusual metallic-lined nature of this system presents a unique opportunity to test stellar evolution models. In this poster, we present high resolution observations of Lam Vir, taken with the Infrared-Optical Telescopes Array (IOTA) between 2003 and 2005. By combining our interferometric data with double-lined radial velocity data, we determined for the first time the physical orbit of Lam Vir, as well as the orbital parallax of the system. In addition, the masses of the two components are determined with 1% and 1.5% errors respectively. Our preliminary result from comparison with stellar evolution models suggests a discrepancy between Lam Vir and standard models.

Spectral measurements of howardites in support of the interpretation of the Dawn VIR spectra at Vesta

NASA Astrophysics Data System (ADS)

De Angelis, S.; Ammannito, E.; Di Iorio, T.; De Sanctis, M.; Mittlefehldt, D.

2014-07-01

The howardites, eucrites, and diogenites constitute a suite of meteorite lithologies (HED) known to be related to asteroid Vesta [1]. Howardites are physical mixtures of eucrites and diogenites. Howardites are divided in two subtypes: regolithic howardites are actually linked to the true regolith, while fragmental howardites are simple polymict breccias [2]. Mapping of Vesta's surface, as obtained with data from Visible and Infrared mapping Spectrometer (VIR) on Dawn [3,4], showed that it is mainly howarditic, with few regions of diogenite-rich and eucrite-rich terrains [5, 6]. In order to map quantitatively the distribution of lithologic types on Vesta, we are carrying on a study of a set of well-characterized howardites [7]. Spectra were measured on sample powders sieved to 75 μ m in the laboratories of the Istituto di Astrofisica e Planetologia Spaziali (IAPS-INAF) in Rome (Italy) and Brown University, in Providence (USA). Here we report about the measurements done at IAPS-INAF. The spectra of 33 samples have been acquired with the S.LAB setup, consisting in the FieldSpec Pro spectrometer (range 0.35-2.5 μ m, spatial resolution 0.5 cm^2) coupled with a goniometer (incidence i=30°, emission e=0°) [8]. Some representative spectra of the measured howardites are shown in the figure. The spectra are characterized by the two broad Fe^{2+} absorption bands near 1 and 2 μ m (BI and BII) indicative of pyroxenes. Band parameters relative to BI and BII have been calculated using the algorithm developed to process VIR spectra [4]. This enables us to compare laboratory data directly with the VIR results. Other weaker absorptions also characterize some spectra: the 0.5 μ m feature (Mn^{2+} or Cr^{3+}) and the 1.2 μ m feature possibly due to Fe^{2+} in plagioclases. The PRA04401 sample is characterized by a pyroxene-carbonaceous matter mixture [7].

Thermal measurements of dark and bright surface features on Vesta as derived from Dawn/VIR

USGS Publications Warehouse

Tosi, Federico; Capria, Maria Teresa; De Sanctis, M.C.; Combe, J.-Ph.; Zambon, F.; Nathues, A.; Schröder, S.E.; Li, J.-Y.; Palomba, E.; Longobardo, A.; Blewett, D.T.; Denevi, B.W.; Palmer, E.; Capaccioni, F.; Ammannito, E.; Titus, Timothy N.; Mittlefehldt, D.W.; Sunshine, J.M.; Russell, C.T.; Raymond, C.A.; Dawn/VIR Team,

2014-01-01

Remote sensing data acquired during Dawn’s orbital mission at Vesta showed several local concentrations of high-albedo (bright) and low-albedo (dark) material units, in addition to spectrally distinct meteorite impact ejecta. The thermal behavior of such areas seen at local scale (1-10 km) is related to physical properties that can provide information about the origin of those materials. We use Dawn’s Visible and InfraRed (VIR) mapping spectrometer hyperspectral data to retrieve surface temperatures and emissivities, with high accuracy as long as temperatures are greater than 220 K. Some of the dark and bright features were observed multiple times by VIR in the various mission phases at variable spatial resolution, illumination and observation angles, local solar time, and heliocentric distance. This work presents the first temperature maps and spectral emissivities of several kilometer-scale dark and bright material units on Vesta. Results retrieved from the infrared data acquired by VIR show that bright regions generally correspond to regions with lower temperature, while dark regions correspond to areas with higher temperature. During maximum daily insolation and in the range of heliocentric distances explored by Dawn, i.e. 2.23-2.54 AU, the warmest dark unit found on Vesta rises to a temperature of 273 K, while bright units observed under comparable conditions do not exceed 266 K. Similarly, dark units appear to have higher emissivity on average compared to bright units. Dark-material units show a weak anticorrelation between temperature and albedo, whereas the relation is stronger for bright material units observed under the same conditions. Individual features may show either evanescent or distinct margins in the thermal images, as a consequence of the cohesion of the surface material. Finally, for the two categories of dark and bright materials, we were able to highlight the influence of heliocentric distance on surface temperatures, and estimate an average temperature rate change of 1% following a variation of 0.04 AU in the solar distance.

Towards Calibrating the Vestan Regolith: Correlating the Petrology, Chemistry and Spectroscopy of Howardites

NASA Technical Reports Server (NTRS)

Mittlefehldt, D. W.; Ammannito, E.; Hiroi, T.; De Angelis, S.; Di Iorio, T.; Pieters, C. M.; De Sanctis, C.

2013-01-01

The Dawn spacecraft carries a visible and infrared mapping spectrometer (VIR) [1] that has acquired spectra for the wavelength range 0.25-5.0 µm at various spatial resolutions covering much of the vestan surface [2]. Through comparison of VIR spectra with laboratory spectra of howardite, eucrite and diogenite meteorites, the distribution of more diogenite-rich and more eucrite-rich terranes on Vesta have been mapped [3], but these maps are qualitative in nature. The available laboratory spectra are not well-integrated with detailed sample petrology or composition limiting their utility for lithologic mapping. Importantly, howardites are now recognized to come in two subtypes, regolithic and fragmental [4]. The former are breccias assembled in part from true regolith, while the latter have had much less exposure to the space environment. We are attempting to develop a more quantitative basis for mapping the distribution of lithologic types on Vesta through acquiring laboratory spectra on splits of howardites that have been petrologically and chemically characterized [5]. Noble gas analyses have been done on some allowing identification of those howardites that have been exposed in the true regolith of Vesta [6].

Compositional maps and VIS-IR spectral indicators of Vesta's surface retrieved from VIR hyperspectral data

NASA Astrophysics Data System (ADS)

Filacchione, G.; Ammannito, E.; Coradini, A.; De sanctis, M.; Capaccioni, F.; Tosi, F.; Capria, M. T.; Palomba, E.; Magni, G.; Fonte, S.; Carraro, F.; McSween, H. Y.; Raymond, C. A.; Russell, C. T.; McCord, T. B.; Pieters, C. M.; Sunshine, J. M.; Titus, T. N.; Combe, J.; Dawn Science Team

2011-12-01

In July 2011, VIR-MS, Visible and Infrared Mapping Spectrometer, aboard the Dawn mission has started a systematic exploration of minor planet Vesta from a 5000 km polar orbit (approach phase). Since then, the instrument has returned hyperspectral cubes in the 0.25-5 μm range with both global and regional views of Vesta's surface. Thanks to the high spatial (250 μrad IFOV, corresponding to a 1.25 km/pixel scale from a 5000 km altitude orbit) and spectral resolution (2 nm/band between 0.25-1 μm and 10 nm/band in the 1-5 μm range), VIR has the capabilities to infer the mineralogical composition of the crust, to discriminate among the very different compositional units, to map their distribution across the surface and to correlate composition with geological features. Since the amount of information provided by each VIR pixel is very large (864 channels), we have developed the VIR Mineralogical Tool (VMT) with the scope of measuring some specific spectral quantities which are tuned to identify the different howarditic, eucritic and diogenitic (HED) components of the crust, thanks to laboratory measurements and ground-based observations of HED meteorites. Continuum levels, VIS-IR band ratios, band I-II properties (center, depth, width, asymmetry), spectral slopes and their mutual correlations are among the principal spectral indicators used to infer the crustal basaltic composition. As a general rule for basaltic materials: 1) the ratio of band I/II areas gives the Band Area Ratio (BAR) which is function of the relative abundance of olivine/orthopyroxene; 2) the value of the I Vs. II band depths is an indicator of the composition, allowing to discriminate among HEDs. An alternative method is based on the correlation between band I width and 0.7-1.3 μm slope or the band I depth Vs. the 0.67-0.95 μm slope; 3) the amount of Fs, Wo and Mg is retrieved from the band I center and band II minima wavelengths; 4) the alteration of the surface, induced by weathering processes, is recognizable through the changes on visible and near infrared slopes. Finally, we report about preliminary compositional maps to show the distribution of the different spectral indicators across the surface of Vesta. Dawn's VIR, Visible and Infrared Mapping Spectrometer was provided by ASI, the Italian Space Agency and is managed by INAF, Italy's National Institute for Astrophysics, in collaboration with Selex Galileo, where it was designed and built. Italian coauthors are supported by an ASI grant.

CERES Monthly Gridded Single Satellite Fluxes and Clouds (FSW) in HDF (CER_FSW_TRMM-PFM-VIRS_Beta1)

NASA Technical Reports Server (NTRS)

Wielicki, Bruce A. (Principal Investigator); Barkstrom, Bruce R. (Principal Investigator)

The Monthly Gridded Radiative Fluxes and Clouds (FSW) product contains a month of space and time averaged Clouds and the Earth's Radiant Energy System (CERES) data for a single scanner instrument. The FSW is also produced for combinations of scanner instruments. All instantaneous fluxes from the CERES CRS product for a month are sorted by 1-degree spatial regions and by the Universal Time (UT) hour of observation. The mean of the instantaneous fluxes for a given region-hour bin is determined and recorded on the FSW along with other flux statistics and scene information. The mean adjusted fluxes at the four atmospheric levels defined by CRS are also included for both clear-sky and total-sky scenes. In addition, four cloud height categories are defined by dividing the atmosphere into four intervals with boundaries at the surface, 700-, 500-, 300-hPa, and the Top-of-the-Atmosphere (TOA). The cloud layers from CRS are put into one of the cloud height categories and averaged over the region. The cloud properties are also column averaged and included on the FSW. [Location=GLOBAL] [Temporal_Coverage: Start_Date=1998-01-01; Stop_Date=2000-03-31] [Spatial_Coverage: Southernmost_Latitude=-90; Northernmost_Latitude=90; Westernmost_Longitude=-180; Easternmost_Longitude=180] [Data_Resolution: Latitude_Resolution=1 degree; Longitude_Resolution=1 degree; Horizontal_Resolution_Range=100 km - < 250 km or approximately 1 degree - < 2.5 degrees; Temporal_Resolution=1 month; Temporal_Resolution_Range=Monthly - < Annual].

Global cloud database from VIRS and MODIS for CERES

NASA Astrophysics Data System (ADS)

Minnis, Patrick; Young, David F.; Wielicki, Bruce A.; Sun-Mack, Sunny; Trepte, Qing Z.; Chen, Yan; Heck, Patrick W.; Dong, Xiquan

2003-04-01

The NASA CERES Project has developed a combined radiation and cloud property dataset using the CERES scanners and matched spectral data from high-resolution imagers, the Visible Infrared Scanner (VIRS) on the Tropical Rainfall Measuring Mission (TRMM) satellite and the Moderate Resolution Imaging Spectroradiometer (MODIS) on Terra and Aqua. The diurnal cycle can be well-characterized over most of the globe using the combinations of TRMM, Aqua, and Terra data. The cloud properties are derived from the imagers using state-of-the-art methods and include cloud fraction, height, optical depth, phase, effective particle size, emissivity, and ice or liquid water path. These cloud products are convolved into the matching CERES fields of view to provide simultaneous cloud and radiation data at an unprecedented accuracy. Results are available for at least 3 years of VIRS data and 1 year of Terra MODIS data. The various cloud products are compared with similar quantities from climatological sources and instantaneous active remote sensors. The cloud amounts are very similar to those from surface observer climatologies and are 6-7% less than those from a satellite-based climatology. Optical depths are 2-3 times smaller than those from the satellite climatology, but are within 5% of those from the surface remote sensing. Cloud droplet sizes and liquid water paths are within 10% of the surface results on average for stratus clouds. The VIRS and MODIS retrievals are very consistent with differences that usually can be explained by sampling, calibration, or resolution differences. The results should be extremely valuable for model validation and improvement and for improving our understanding of the relationship between clouds and the radiation budget.

HoloVir: A Workflow for Investigating the Diversity and Function of Viruses in Invertebrate Holobionts

PubMed Central

Laffy, Patrick W.; Wood-Charlson, Elisha M.; Turaev, Dmitrij; Weynberg, Karen D.; Botté, Emmanuelle S.; van Oppen, Madeleine J. H.; Webster, Nicole S.; Rattei, Thomas

2016-01-01

Abundant bioinformatics resources are available for the study of complex microbial metagenomes, however their utility in viral metagenomics is limited. HoloVir is a robust and flexible data analysis pipeline that provides an optimized and validated workflow for taxonomic and functional characterization of viral metagenomes derived from invertebrate holobionts. Simulated viral metagenomes comprising varying levels of viral diversity and abundance were used to determine the optimal assembly and gene prediction strategy, and multiple sequence assembly methods and gene prediction tools were tested in order to optimize our analysis workflow. HoloVir performs pairwise comparisons of single read and predicted gene datasets against the viral RefSeq database to assign taxonomy and additional comparison to phage-specific and cellular markers is undertaken to support the taxonomic assignments and identify potential cellular contamination. Broad functional classification of the predicted genes is provided by assignment of COG microbial functional category classifications using EggNOG and higher resolution functional analysis is achieved by searching for enrichment of specific Swiss-Prot keywords within the viral metagenome. Application of HoloVir to viral metagenomes from the coral Pocillopora damicornis and the sponge Rhopaloeides odorabile demonstrated that HoloVir provides a valuable tool to characterize holobiont viral communities across species, environments, or experiments. PMID:27375564

Arruntia Crater: A Rare Window into Vesta’s Northern Hemisphere

NASA Astrophysics Data System (ADS)

Sunshine, Jessica; Cheek, Leah

2015-11-01

One of the intriguing results of the Dawn mission to Vesta was the discovery that the only deposits containing significant olivine, a key mineralogic indicator of primitive materials, occur in two shallow craters in the northern hemisphere. Numerous investigations into these exposures using either the Framing Camera (FC) or the VIR spectrometer typically find similarities between the olivine outcropping in Bellicia’s wall and in the Arruntia ejecta. Our own investigations - using a hybrid VIR-FC approach -suggest an important distinction between the exposures at the two craters. Specifically, we find that the proximal Arruntia ejecta are dominated not by an olivine-rich component (although isolated examples occur), but instead by a more evolved, eucritic component. These interspersed eucritic materials are similar to olivine-rich materials in FC data because both components pull the 1 um band to longer wavelengths. Ultimately, however, they are distinguished by the position and strength of the 2 um band, which is not covered by FC wavelengths. The Arruntia ejecta also appear olivine-like in some parameterizations of VIR spectra for the area, but closer examination of the full spectra at a fine spatial scale clearly suggests the presence of two different materials. Interestingly, the approach used here also reveals a separate diogenitic component in the distal Arruntia ejecta as well as in isolated locations within Arruntia’s wall. Initial evaluation of stratigraphic relationships in the Arruntia ejecta suggest a pre-impact sequence of eucrite -> olivine-rich -> diogenite grading from depth to the shallowest subsurface (although the small size of Arruntia means that this entire assemblage was excavated from no more than a few of kilometers below the surface). These results illustrate two main points: first, that pyroxene-bearing materials rich in olivine are difficult to distinguish from evolved pyroxenes in the absence of full resolution spectroscopy at a fine spatial scale. Second, we find that Arruntia crater is likely a unique location on Vesta where pervasive mechanical gardening has not yet masked the stratigraphic relationships between endmember diogenitic and eucritic components nor olivine-enhancements.

Halo mass dependence of H I and O VI absorption: evidence for differential kinematics

DOE Office of Scientific and Technical Information (OSTI.GOV)

Mathes, Nigel L.; Churchill, Christopher W.; Nielsen, Nikole M.

2014-09-10

We studied a sample of 14 galaxies (0.1 < z < 0.7) using HST/WFPC2 imaging and high-resolution HST/COS or HST/STIS quasar spectroscopy of Lyα, Lyβ, and O VI λλ1031, 1037 absorption. The galaxies, having 10.8 ≤ log (M {sub h}/M {sub ☉}) ≤ 12.2, lie within D = 300 kpc of quasar sightlines, probing out to D/R {sub vir} = 3. When the full range of M {sub h} and D/R {sub vir} of the sample are examined, ∼40% of the H I absorbing clouds can be inferred to be escaping their host halo. The fraction of bound clouds decreasesmore » as D/R {sub vir} increases such that the escaping fraction is ∼15% for D/R {sub vir} < 1, ∼45% for 1 ≤ D/R {sub vir} < 2, and ∼90% for 2 ≤ D/R {sub vir} < 3. Adopting the median mass log M {sub h}/M {sub ☉} = 11.5 to divide the sample into 'higher' and 'lower' mass galaxies, we find a mass dependency for the hot circumgalactic medium kinematics. To our survey limits, O VI absorption is found in only ∼40% of the H I clouds in and around lower mass halos as compared to ∼85% around higher mass halos. For D/R {sub vir} < 1, lower mass halos have an escape fraction of ∼65%, whereas higher mass halos have an escape fraction of ∼5%. For 1 ≤ D/R {sub vir} < 2, the escape fractions are ∼55% and ∼35% for lower mass and higher mass halos, respectively. For 2 ≤ D/R {sub vir} < 3, the escape fraction for lower mass halos is ∼90%. We show that it is highly likely that the absorbing clouds reside within 4R {sub vir} of their host galaxies and that the kinematics are dominated by outflows. Our finding of 'differential kinematics' is consistent with the scenario of 'differential wind recycling' proposed by Oppenheimer et al. We discuss the implications for galaxy evolution, the stellar to halo mass function, and the mass-metallicity relationship of galaxies.« less

First observations of Ceres by VIR on Dawn mission

NASA Astrophysics Data System (ADS)

De Sanctis, M. Cristina; Ammannito, Eleonora; Fonte, Sergio; Magni, Gianfranco; Capaccioni, Fabrizio; Capria, M. Teresa; Raymond, Carol. A.; Russell, Christopher T.

2015-04-01

The Dawn spacecraft [1] is now approaching Ceres, the second of its targets. Ceres represents the key to understand some important points relative to the role of the protoplanet size and the water content in the evolution of these bodies. Ceres is thought to be differentiated, and hydrated minerals were proposed to exist on its surface [2,3,4]. Its low density [3] associated with the presence of transient water vapour, suggests a high content of ice inside the body and on its surface. Ceres seems to have been subject to differentiation and hydrothermal activity, and might host a liquid subsurface layer even today. Dawn is equipped with a Visible and InfraRed Mapping Spectrometer (VIR-MS) [5]. VIR-MS is an imaging spectrometer coupling high spectral and spatial resolution in the VIS (0.25-1 micron) and IR (0.95-5 micron) spectral ranges. The surface composition of Ceres is poorly understood through its nearly featureless visible spectrum. Its visible reflectance spectrum has a steep UV absorption edge that begins at a relatively short wavelength, around 0.4 micron, unlike many C-type asteroids where the UV drop-off begins around 0.6 to 0.7 micron[6]. The near-IR spectrum has a strong absorption band centered at about 3-micron. The absorption features in the 3-micron region were attributed to structural water in clay minerals [7,8] but could also be ammoniated clays [9]. [10] reported the discovery of carbonates and iron-rich clays from measurements of weak 3-micron features, and the results are consistent with the mid-IR spectra of clay minerals. On approach to Ceres, Dawn will obtain images and hyperspectral . VIR data, with resolution larger than Hubble images will reveal the first details of the Ceres' surface composition. Here we report about the first data obtained by VIR during its approach to Ceres. Acknowledgments VIR is funded by the Italian Space Agency-ASI and was developed under the leadership of INAF-Istituto di Astrofisica e Planetologia Spaziali, Rome-Italy. The instrument was built by Selex-Galileo, Florence-Italy. The authors acknowledge the support of the Dawn Science, Instrument, and Operations Teams. This work was supported by ASI and NASA. A portion of this work was performed at the JPL/NASA. References [1] Russell, C.T. et al., Science, 336, 684, 2012. [2] McCord et al., Space Science Reviews 163:63, 2011 [3] Thomas, P.C., Parker, J.Wm., McFadden, L.A., et al. Nature, 437, 224-226, 2005 [4] Kuppers et al., Nature, 505, 525-527, 2014 [5]De Sanctis M.C. et al., Space Sci. Rev., DOI 10.1007/s11214-010-9668-5 , 2010. [6] Li et al.,Icarus, doi:10.1016/j.icarus.2005.12.012, 2006 [7] Lebofsky, L.A., Feierberg, M.A., Tokunaga, A.T., Larson, H.P., Johnson, J.R.,. Icarus 48, 453-459. 1981 [8] Feierberg, M.A., Lebofsky, L.A., Larson, H.P., Geochim. Cosmochim. Acta 45, 971-981, 1981 [9] King, T.V.V., Clark, R.N., Calvin, W.M., Sherman, D.M., Brown, R.H.,Science 255, 1551- 1553, 1992 [10] Rivkin, A.S., Volquardsen, E.L., Clark, B.E., Icarus 185, 563-567, 2006

Diurnal, Seasonal, and Interannual Variations of Cloud Properties Derived for CERES From Imager Data

NASA Technical Reports Server (NTRS)

Minnis, Patrick; Young, David F.; Sun-Mack, Sunny; Trepte, Qing Z.; Chen, Yan; Brown, Richard R.; Gibson, Sharon; Heck, Patrick W.

2004-01-01

Simultaneous measurement of the radiation and cloud fields on a global basis is a key component in the effort to understand and model the interaction between clouds and radiation at the top of the atmosphere, at the surface, and within the atmosphere. The NASA Clouds and Earth s Radiant Energy System (CERES) Project, begun in 1998, is meeting this need. Broadband shortwave (SW) and longwave radiance measurements taken by the CERES scanners at resolutions between 10 and 20 km on the Tropical Rainfall Measuring Mission (TRMM), Terra, and Aqua satellites are matched to simultaneous retrievals of cloud height, phase, particle size, water path, and optical depth OD from the TRMM Visible Infrared Scanner (VIRS) and the Moderate Resolution Imaging Spectroradiometer (MODIS) on Terra and Aqua. Besides aiding the interpretation of the broadband radiances, the CERES cloud properties are valuable for understanding cloud variations at a variety of scales. In this paper, the resulting CERES cloud data taken to date are averaged at several temporal scales to examine the temporal and spatial variability of the cloud properties on a global scale at a 1 resolution.

Rough-surface model for surface temperature calculations on Vesta

NASA Astrophysics Data System (ADS)

Palmer, E.; Sykes, M.

2014-07-01

We model observations by the Dawn Visual and Infrared spectrometer (VIR) [1] to reproduce the observed surface temperature of Vesta. The VIR instrument has collected over 3,700 spectral cubes of Vesta out to 5.1 microns. The observed surface temperature is derived by matching the irradiance near 5 microns with a grey body, the Planck function after removing a reflected-light component per previous procedures [2--5] with similar results. We noted that the observed surface temperatures are significantly hotter than what simple theoretical models would predict [2]. To better understand this, we used a high-resolution topographic model of Vesta [6] that provided exact phase, incidence, and emission angles for every VIR pixel. We assume an emissivity of 0.9, Bond albedo of between 0.16 and 0.22 [5], and a variety of thermal inertia values for a low-contrast, highly degraded, homogenous crater. We have created a ''rough-surface'' thermal model that takes into account how irregular grains create sub-pixel variations in the thermal spectrum and describe the effect it has on the observed surface temperatures of Vesta. We have applied this method to the VIR observations of Vesta, which produced a high level of agreement with the observed surface temperatures.

Comparison of CERES Cloud Properties Derived from Aqua and Terra MODIS Data and TRMM VIRS Radiances

NASA Astrophysics Data System (ADS)

Minnis, P.; Young, D. F.; Sun-Mack, S.; Trepte, Q. Z.; Chen, Y.; Heck, P. W.; Wielicki, B. A.

2003-12-01

The Clouds and Earth's Radiant Energy System (CERES) Project is obtaining Earth radiation budget measurements of unprecedented accuracy as a result of improved instruments and an analysis system that combines simultaneous, high-resolution cloud property retrievals with the broadband radiance data. The cloud properties are derived from three different satellite imagers: the Visible Infrared Scanner (VIRS) on the Tropical Rainfall Measuring Mission (TRMM) and the Moderate Resolution Imaging Spectroradiometers (MODIS) on the Aqua and Terra satellites. A single set of consistent algorithms using the 0.65, 1.6 or 2.1, 3.7, 10.8, and 12.0-æm channels are applied to all three imagers. The cloud properties include, cloud coverage, height, thickness, temperature, optical depth, phase, effective particle size, and liquid or ice water path. Because each satellite is in a different orbit, the results provide information on the diurnal cycle of cloud properties. Initial intercalibrations show excellent consistency between the three images except for some differences of ~ 1K between the 3.7-æm channel on Terra and those on VIRS and Aqua. The derived cloud properties are consistent with the known diurnal characteristics of clouds in different areas. These datasets should be valuable for exploring the role of clouds in the radiation budget and hydrological cycle.

Geologic Structures in Crater Walls on Vesta

NASA Technical Reports Server (NTRS)

Mittlefehldt, David W.; Beck, A. W.; Ammannito, E.; Carsenty, U.; DeSanctis, M. C.; LeCorre, L.; McCoy, T. J.; Reddy, V.; Schroeder, S. E.

2012-01-01

The Framing Camera (FC) on the Dawn spacecraft has imaged most of the illuminated surface of Vesta with a resolution of apporpx. 20 m/pixel through different wavelength filters that allow for identification of lithologic units. The Visible and Infrared Mapping Spectrometer (VIR) has imaged the surface at lower spatial resolution but high spectral resolution from 0.25 to 5 micron that allows for detailed mineralogical interpretation. The FC has imaged geologic structures in the walls of fresh craters and on scarps on the margin of the Rheasilvia basin that consist of cliff-forming, competent units, either as blocks or semi-continuous layers, hundreds of m to km below the rims. Different units have different albedos, FC color ratios and VIR spectral characteristics, and different units can be juxtaposed in individual craters. We will describe different examples of these competent units and present preliminary interpretations of the structures. A common occurrence is of blocks several hundred m in size of high albedo (bright) and low albedo (dark) materials protruding from crater walls. In many examples, dark material deposits lie below coherent bright material blocks. In FC Clementine color ratios, bright material is green indicating deeper 1 m pyroxene absorption band. VIR spectra show these to have deeper and wider 1 and 2 micron pyroxene absorption bands than the average vestan surface. The associated dark material has subdued pyroxene absorption features compared to the average vestan surface. Some dark material deposits are consistent with mixtures of HED materials with carbonaceous chondrites. This would indicate that some dark material deposits in crater walls are megabreccia blocks. The same would hold for bright material blocks found above them. Thus, these are not intact crustal units. Marcia crater is atypical in that the dark material forms a semi-continuous, thin layer immediately below bright material. Bright material occurs as one or more layers. In one region, there is an apparent angular unconformity between the bright material and the dark material where bright material layers appear to be truncated against the underlying dark layer. One crater within the Rheasilvia basin contains two distinct types of bright materials outcropping on its walls, one like that found elsewhere on Vesta and the other an anomalous block 200 m across. This material has the highest albedo; almost twice that of the vestan average. Unlike all other bright materials, this block has a subdued 1 micron pyroxene absorption band in FC color ratios. These data indicate that this block represents a distinct vestan lithology that is rarely exposed.

Crystal structure of the Agrobacterium virulence complex VirE1-VirE2 reveals a flexible protein that can accommodate different partners.

PubMed

Dym, Orly; Albeck, Shira; Unger, Tamar; Jacobovitch, Jossef; Branzburg, Anna; Michael, Yigal; Frenkiel-Krispin, Daphna; Wolf, Sharon Grayer; Elbaum, Michael

2008-08-12

Agrobacterium tumefaciens infects its plant hosts by a mechanism of horizontal gene transfer. This capability has led to its widespread use in artificial genetic transformation. In addition to DNA, the bacterium delivers an abundant ssDNA binding protein, VirE2, whose roles in the host include protection from cytoplasmic nucleases and adaptation for nuclear import. In Agrobacterium, VirE2 is bound to its acidic chaperone VirE1. When expressed in vitro in the absence of VirE1, VirE2 is prone to oligomerization and forms disordered filamentous aggregates. These filaments adopt an ordered solenoidal form in the presence of ssDNA, which was characterized previously by electron microscopy and three-dimensional image processing. VirE2 coexpressed in vitro with VirE1 forms a soluble heterodimer. VirE1 thus prevents VirE2 oligomerization and competes with its binding to ssDNA. We present here a crystal structure of VirE2 in complex with VirE1, showing that VirE2 is composed of two independent domains presenting a novel fold, joined by a flexible linker. Electrostatic interactions with VirE1 cement the two domains of VirE2 into a locked form. Comparison with the electron microscopy structure indicates that the VirE2 domains adopt different relative orientations. We suggest that the flexible linker between the domains enables VirE2 to accommodate its different binding partners.

Comparison of S-NPP VIIRS land surface temperature with SEVIRI

NASA Astrophysics Data System (ADS)

Ermida, Sofia L.; Trigo, Isabel F.; Liu, Yuling; Yu, Yunyue

2017-04-01

Land surface temperature (LST) is one of the key parameters in the physics of land surface processes. LST can be globally measured from space by infrared radiometers, with a wide range of spatial and temporal resolutions depending on the sensor design and orbit. The Visible Infrared Imaging Radiometer Suite (VIIRS) instrument is the primary sensor onboard the Suomi National Polar-orbiting Partnership (S-NPP) satellite, which was launched in recent years. VIIRS was designed to improve upon the capabilities of the operational AVHRR and provide observation continuity with MODIS. A Split Window approach has been applied to the VIIRS moderate resolution channels M15 and M16 centered at 10.76 µm and 12.01 µm, respectively. VIIRS has a swath of 3000 km and a spatial resolution of 745m (nadir) up to about 1600 m (limb view), leading to relatively high re-visiting frequency. LST is retrieved for a wide range of viewing angles along the VIIRS path, allowing the study of the variability of LST with viewing geometry for various land cover types. Here we present a comparison of VIRS LST data with data provided by the Spinning Enhanced Visible and Infrared Imager (SEVIRI) on-board EUMETSAT's Meteosat Second Generation (MSG). SEVIRI-based LST is available every 15-minute, but at coarser spatial resolution (3-km at nadir) when compared to VIIRS LST. The analysis is performed over 6 areas over the SEVIRI disk characterized by different surface conditions. VIIRS has generally slightly warmer night-time LST compared with SEVIRI, with differences smaller than 2K. Larger differences are found during daytime, with VIIRS presenting overall lower LST values up to 5K. These differences are also analysed taking into account the surface type, view zenith angle (VZA) and topography. As seen in previous comparison studies, high VZA and elevation values are associated to higher discrepancies of the LST products.

Cloud-scale Molecular Gas Properties in 15 Nearby Galaxies

NASA Astrophysics Data System (ADS)

Sun孙, Jiayi嘉懿; Leroy, Adam K.; Schruba, Andreas; Rosolowsky, Erik; Hughes, Annie; Kruijssen, J. M. Diederik; Meidt, Sharon; Schinnerer, Eva; Blanc, Guillermo A.; Bigiel, Frank; Bolatto, Alberto D.; Chevance, Mélanie; Groves, Brent; Herrera, Cinthya N.; Hygate, Alexander P. S.; Pety, Jérôme; Querejeta, Miguel; Usero, Antonio; Utomo, Dyas

2018-06-01

We measure the velocity dispersion, σ, and surface density, Σ, of the molecular gas in nearby galaxies from CO spectral line cubes with spatial resolution 45–120 pc, matched to the size of individual giant molecular clouds. Combining 11 galaxies from the PHANGS-ALMA survey with four targets from the literature, we characterize ∼30,000 independent sightlines where CO is detected at good significance. Σ and σ show a strong positive correlation, with the best-fit power-law slope close to the expected value for resolved, self-gravitating clouds. This indicates only a weak variation in the virial parameter α vir ∝ σ 2/Σ, which is ∼1.5–3.0 for most galaxies. We do, however, observe enormous variation in the internal turbulent pressure P turb ∝ Σσ 2, which spans ∼5 dex across our sample. We find Σ, σ, and P turb to be systematically larger in more massive galaxies. The same quantities appear enhanced in the central kiloparsec of strongly barred galaxies relative to their disks. Based on sensitive maps of M31 and M33, the slope of the σ–Σ relation flattens at Σ ≲ 10 M ⊙ pc‑2, leading to high σ for a given Σ and high apparent α vir. This echoes results found in the Milky Way and likely originates from a combination of lower beam-filling factors and a stronger influence of local environment on the dynamical state of molecular gas in the low-density regime.

The Space Motion of Leo I: The Mass of the Milky Way's Dark Matter Halo

NASA Astrophysics Data System (ADS)

Boylan-Kolchin, Michael; Bullock, James S.; Sohn, Sangmo Tony; Besla, Gurtina; van der Marel, Roeland P.

2013-05-01

We combine our Hubble Space Telescope measurement of the proper motion of the Leo I dwarf spheroidal galaxy (presented in a companion paper) with the highest resolution numerical simulations of Galaxy-size dark matter halos in existence to constrain the mass of the Milky Way's dark matter halo (M vir, MW). Despite Leo I's large Galactocentric space velocity (200 km s-1) and distance (261 kpc), we show that it is extremely unlikely to be unbound if Galactic satellites are associated with dark matter substructure, as 99.9% of subhalos in the simulations are bound to their host. The observed position and velocity of Leo I strongly disfavor a low-mass Milky Way: if we assume that Leo I is the least bound of the Milky Way's classical satellites, then we find that M vir, MW > 1012 M ⊙ at 95% confidence for a variety of Bayesian priors on M vir, MW. In lower mass halos, it is vanishingly rare to find subhalos at 261 kpc moving as fast as Leo I. Should an additional classical satellite be found to be less bound than Leo I, this lower limit on M vir, MW would increase by 30%. Imposing a mass-weighted ΛCDM prior, we find a median Milky Way virial mass of M vir, MW = 1.6 × 1012 M ⊙, with a 90% confidence interval of [1.0-2.4] × 1012 M ⊙. We also confirm a strong correlation between subhalo infall time and orbital energy in the simulations and show that proper motions can aid significantly in interpreting the infall times and orbital histories of satellites.

Detection of Accretion X-Rays from QS Vir: Cataclysmic or a Lot of Hot Air?

NASA Astrophysics Data System (ADS)

Matranga, Marco; Drake, Jeremy J.; Kashyap, Vinay; Steeghs, Danny

2012-03-01

An XMM-Newton observation of the nearby "pre-cataclysmic" short-period (P orb = 3.62 hr) binary QS Vir (EC 13471-1258) revealed regular narrow X-ray eclipses when the white dwarf passed behind its M2-4 dwarf companion. The X-ray emission provides a clear signature of mass transfer and accretion onto the white dwarf. The low-resolution XMM-Newton EPIC spectra are consistent with a cooling flow model and indicate an accretion rate of \\dot{M} = 1.7 \\times 10^{-13} \\,M_\\odot yr-1. At 48 pc distant, QS Vir is then the second nearest accreting cataclysmic variable known, with one of the lowest accretion rates found to date for a non-magnetic system. To feed this accretion through a wind would require a wind mass-loss rate of \\dot{M}\\sim 2\\times 10^{-12}\\,M_\\odot yr-1 if the accretion efficiency is of the order of 10%. Consideration of likely mass-loss rates for M dwarfs suggests this is improbably high and pure wind accretion unlikely. A lack of accretion disk signatures also presents some difficulties for direct Roche lobe overflow. We speculate that QS Vir is on the verge of Roche lobe overflow, and that the observed mass transfer could be supplemented by upward chromospheric flows on the M dwarf, analogous to spicules and mottles on the Sun, that escape the Roche surface to be subsequently swept up into the white dwarf Roche lobe. If so, QS Vir would be in a rare evolutionary phase lasting only a million years. The X-ray luminosity of the M dwarf estimated during primary eclipse is LX = 3 × 1028 erg s-1, which is consistent with that of rapidly rotating "saturated" K and M dwarfs.

Mutants of Agrobacterium tumefaciens with elevated vir gene expression

DOE Office of Scientific and Technical Information (OSTI.GOV)

Pazour, G.J.; Ta, C.N.; Das, A.

1991-08-15

Expression of Agrobacterium tumefaciens virulence (vir) genes requires virA, virG, and a plant-derived inducing compound such as acetosyringone. To identify the critical functional domains of virA and virG, a mutational approach was used. Agrobacterium A136 harboring plasmid pGP159, which contains virA, virG, and a reporter virB:lacZ gene fusion, was mutagenized with UV light or nitrosoguanidine. Survivors that formed blue colonies on a plate containing 5-bromo-4-chloro-3-indolyl beta-D-galactoside were isolated and analyzed. Quantification of beta-galactosidase activity in liquid assays identified nine mutant strains. By plasmid reconstruction and other procedures, all mutations mapped to the virA locus. These mutations caused an 11- tomore » 560-fold increase in the vegetative level of virB:lacZ reporter gene expression. DNA sequence analysis showed that the mutations are located in four regions of VirA: transmembrane domain one, the active site, a glycine-rich region with homology to ATP-binding sites, and a region at the C terminus that has homology to the N terminus of VirG.« less

Genetic evidence for direct sensing of phenolic compounds by the VirA protein of Agrobacterium tumefaciens.

PubMed Central

Lee, Y W; Jin, S; Sim, W S; Nester, E W

1995-01-01

The virulence (vir) genes of Agrobacterium tumefaciens are induced by low-molecular-weight phenolic compounds and monosaccharides through a two-component regulatory system consisting of the VirA and VirG proteins. However, it is not clear how the phenolic compounds are sensed by the VirA/VirG system. We tested the vir-inducing abilities of 15 different phenolic compounds using four wild-type strains of A. tumefaciens--KU12, C58, A6, and Bo542. We analyzed the relationship between structures of the phenolic compounds and levels of vir gene expression in these strains. In strain KU12, vir genes were not induced by phenolic compounds containing 4'-hydroxy, 3'-methoxy, and 5'-methoxy groups, such as acetosyringone, which strongly induced vir genes of the other three strains. On the other hand, vir genes of strain KU12 were induced by phenolic compounds containing only a 4'-hydroxy group, such as 4-hydroxyacetophenone, which did not induce vir genes of the other three strains. The vir genes of strains KU12, A6, and Bo542 were all induced by phenolic compounds containing 4'-hydroxy and 3'-methoxy groups, such as acetovanillone. By transferring different Ti plasmids into isogenic chromosomal backgrounds, we showed that the phenolic-sensing determinant is associated with Ti plasmid. Subcloning of Ti plasmid indicates that the virA locus determines which phenolic compounds can function as vir gene inducers. These results suggest that the VirA protein directly senses the phenolic compounds for vir gene activation. PMID:8618878

The high-resolution spectrum of the pulsating, pre-white dwarf star PG 1159-035 (GW VIR)

NASA Technical Reports Server (NTRS)

Liebert, James; Wesemael, F.; Husfeld, D.; Wehrse, R.; Starrfield, S. G.

1989-01-01

High-resolution and low-resolution UV spectra and a high-resolution optical spectrum were obtained for PG 1159-035, revealing apparent photospheric absorption features with defined cores from N V 1240 A, N IV 1270 A, O V 1371 A, and C IV 1550 A. The photospheric velocity derived using all of these lines except for C IV is about +35 km/s. Equivalent-width measurements determined for all of the features may provide a tighter constraint on the photospheric temperature in a detailed model atmosphere analysis treating the CNO ions.

The putative Agrobacterium transcriptional activator-like virulence protein VirD5 may target T-complex to prevent the degradation of coat proteins in the plant cell nucleus.

PubMed

Wang, Yafei; Peng, Wei; Zhou, Xu; Huang, Fei; Shao, Lingyun; Luo, Meizhong

2014-09-01

Agrobacterium exports at least five virulence proteins (VirE2, VirE3, VirF, VirD2, VirD5) into host cells and hijacks some host plant factors to facilitate its transformation process. Random DNA binding selection assays (RDSAs), electrophoretic mobility shift assays (EMSAs) and yeast one-hybrid systems were used to identify protein-bound DNA elements. Bimolecular fluorescence complementation, glutathione S-transferase pull-down and yeast two-hybrid assays were used to detect protein interactions. Protoplast transformation, coprecipitation, competitive binding and cell-free degradation assays were used to analyze the relationships among proteins. We found that Agrobacterium VirD5 exhibits transcriptional activation activity in yeast, is located in the plant cell nucleus, and forms homodimers. A specific VirD5-bound DNA element designated D5RE (VirD5 response element) was identified. VirD5 interacted directly with Arabidopsis VirE2 Interacting Protein 1 (AtVIP1). However, the ternary complex of VirD5-AtVIP1-VirE2 could be detected, whereas that of VirD5-AtVIP1-VBF (AtVIP1 Binding F-box protein) could not. We demonstrated that VirD5 competes with VBF for binding to AtVIP1 and stabilizes AtVIP1 and VirE2 in the cell-free degradation system. Our results indicated that VirD5 may act as both a transcriptional activator-like effector to regulate host gene expression and a protector preventing the coat proteins of the T-complex from being quickly degraded by the host's ubiquitin proteasome system (UPS). © 2014 The Authors. New Phytologist © 2014 New Phytologist Trust.

VirF-Independent Regulation of Shigella virB Transcription is Mediated by the Small RNA RyhB

PubMed Central

Broach, William H.; Egan, Nicholas; Wing, Helen J.; Payne, Shelley M.; Murphy, Erin R.

2012-01-01

Infection of the human host by Shigella species requires the coordinated production of specific Shigella virulence factors, a process mediated largely by the VirF/VirB regulatory cascade. VirF promotes the transcription of virB, a gene encoding the transcriptional activator of several virulence-associated genes. This study reveals that transcription of virB is also regulated by the small RNA RyhB, and importantly, that this regulation is not achieved indirectly via modulation of VirF activity. These data are the first to demonstrate that the regulation of virB transcription can be uncoupled from the master regulator VirF. It is also established that efficient RyhB-dependent regulation of transcription is facilitated by specific nucleic acid sequences within virB. This study not only reveals RyhB-dependent regulation of virB transcription as a novel point of control in the central regulatory circuit modulating Shigella virulence, but also highlights the versatility of RyhB in controlling bacterial gene expression. PMID:22701677

Assessment of the Visible Channel Calibrations of the TRMM VIRS and MODIS on Aqua and Terra

NASA Technical Reports Server (NTRS)

Minnis, Patrick; Doelling, David R.; Nguyen, Louis; Miller, Walter F.; Chakrapani, Venketesan

2007-01-01

Several recent research satellites carry self-calibrating multispectral imagers that can be used for calibrating operational imagers lacking complete self-calibrating capabilities. In particular, the visible (VIS, 0.65 m) channels on operational meteorological satellites are generally calibrated before launch, but require vicarious calibration techniques to monitor the gains and offsets once they are in orbit. To ensure that the self-calibrating instruments are performing as expected, this paper examines the consistencies between the VIS channel (channel 1) reflectances of the Moderate Resolution Imaging Spectroradiometer (MODIS) instruments on the Terra and Aqua satellites and the Version 5a and 6 reflectances of the Visible Infrared Scanner (VIRS) on the Tropical Rainfall Measuring Mission using a variety of techniques. These include comparisons of Terra and Aqua VIS radiances with coincident broadband shortwave radiances from the well-calibrated Clouds and the Earth s Radiant Energy System (CERES), time series of deep convective cloud (DCC) albedos, and ray-matching intercalibrations between each of the three satellites. Time series of matched Terra and VIRS data, Aqua and VIRS data, and DCC reflected fluxes reveal that an older version (Version 5a, ending in early 2004) of the VIRS calibration produced a highly stable record, while the latest version (Version 6) appears to overestimate the sensor gain change by approx.1%/y as the result of a manually induced gain adjustment. Comparisons with the CERES shortwave radiances unearthed a sudden change in the Terra MODIS calibration that caused a 1.17% decrease in the gain on 19 November 2003 that can be easily reversed. After correction for these manual adjustments, the trends in the VIRS and Terra channels are no greater than 0.1%/y. Although the results were more ambiguous, no statistically significant trends were found in the Aqua MODIS channel-1 gain. The Aqua radiances are 1% greater, on average, than their Terra counterparts, and after normalization are 4.6% greater than VIRS radiances, in agreement with theoretical calculations. The discrepancy between the two MODIS instruments should be taken into account to ensure consistency between parameters derived from them. With the adjustments, any of the three instruments can serve as references for calibrating other satellites. Monitoring of the calibrations continues in near-real-time and the results are available via the world wide web.

Utilizing the Precessing Orbit of TRMM to Produce Hourly Corrections of Geostationary Infrared Imager Data with the VIRS Sensor

NASA Technical Reports Server (NTRS)

Scarino, Benjamin; Doelling, David R.; Haney, Conor; Bedka, Kristopher; Minnis, Patrick; Gopalan, Arun; Bhatt, Rajendra

2017-01-01

Accurate characterization of the Earth's radiant energy is critical for many climate monitoring and weather forecasting applications. For example, groups at the NASA Langley Research Center rely on stable visible- and infrared-channel calibrations in order to understand the temporal/spatial distribution of hazardous storms, as determined from an automated overshooting convective top detection algorithm. Therefore, in order to facilitate reliable, climate-quality retrievals, it is important that consistent calibration coefficients across satellite platforms are made available to the remote sensing community, and that calibration anomalies are recognized and mitigated. One such anomaly is the infrared imager brightness temperature (BT) drift that occurs for some Geostationary Earth Orbit satellite (GEOsat) instruments near local midnight. Currently the Global Space-Based Inter-Calibration System (GSICS) community uses the hyperspectral Infrared Atmospheric Sounding Interferometer (IASI) sensor as a common reference to uniformly calibrate GEOsat IR imagers. However, the combination of IASI, which has a 21:30 local equator crossing time (LECT), and hyperspectral Atmospheric Infrared Sounder (AIRS; 01:30 LECT) observations are unable to completely resolve the GEOsat midnight BT bias. The precessing orbit of the Tropical Rainfall Measuring Mission (TRMM) Visible and Infrared Scanner (VIRS), however, allows sampling of all local hours every 46 days. Thus, VIRS has the capability to quantify the BT midnight effect observed in concurrent GEOsat imagers. First, the VIRS IR measurements are evaluated for long-term temporal stability between 2002 and 2012 by inter-calibrating with Aqua-MODIS. Second, the VIRS IR measurements are assessed for diurnal stability by inter-calibrating with Meteosat-9 (Met-9), a spin-stabilized GEOsat imager that does not manifest any diurnal dependency. In this case, the Met-9 IR imager is first adjusted with the official GSICS calibration coefficients. Then VIRS is used as a diurnal calibration reference transfer to produce hourly corrections of GEOsat IR imager BT. For the 9 three-axis stabilized GEO imagers concurrent with VIRS, the midnight effect increased the BT on average by 0.5 K (11 microns) and 0.4 K (12 microns), with a peak at approx.01:00 local time. As expected, the spin-stabilized GEOsats revealed a smaller diurnal temperature cycle (mostly < 0.2 K) with inconsistent peak hours.

Utilizing the precessing orbit of TRMM to produce hourly corrections of geostationary infrared imager data with the VIRS sensor

NASA Astrophysics Data System (ADS)

Scarino, Benjamin; Doelling, David R.; Haney, Conor; Bedka, Kristopher; Minnis, Patrick; Gopalan, Arun; Bhatt, Rajendra

2017-08-01

Accurate characterization of the Earth's radiant energy is critical for many climate monitoring and weather forecasting applications. For example, groups at the NASA Langley Research Center rely on stable visible- and infraredchannel calibrations in order to understand the temporal/spatial distribution of hazardous storms, as determined from an automated overshooting convective top detection algorithm. Therefore, in order to facilitate reliable, climate-quality retrievals, it is important that consistent calibration coefficients across satellite platforms are made available to the remote sensing community, and that calibration anomalies are recognized and mitigated. One such anomaly is the infrared imager brightness temperature (BT) drift that occurs for some Geostationary Earth Orbit satellite (GEOsat) instruments near local midnight. Currently the Global Space-Based Inter-Calibration System (GSICS) community uses the hyperspectral Infrared Atmospheric Sounding Interferometer (IASI) sensor as a common reference to uniformly calibrate GEOsat IR imagers. However, the combination of IASI, which has a 21:30 local equator crossing time (LECT), and hyperspectral Atmospheric Infrared Sounder (AIRS; 01:30 LECT) observations are unable to completely resolve the GEOsat midnight BT bias. The precessing orbit of the Tropical Rainfall Measuring Mission (TRMM) Visible and Infrared Scanner (VIRS), however, allows sampling of all local hours every 46 days. Thus, VIRS has the capability to quantify the BT midnight effect observed in concurrent GEOsat imagers. First, the VIRS IR measurements are evaluated for long-term temporal stability between 2002 and 2012 by inter-calibrating with Aqua-MODIS. Second, the VIRS IR measurements are assessed for diurnal stability by inter-calibrating with Meteosat-9 (Met-9), a spin-stabilized GEOsat imager that does not manifest any diurnal dependency. In this case, the Met-9 IR imager is first adjusted with the official GSICS calibration coefficients. Then VIRS is used as a diurnal calibration reference transfer to produce hourly corrections of GEOsat IR imager BT. For the 9 three-axis stabilized GEO imagers concurrent with VIRS, the midnight effect increased the BT on average by 0.5 K (11 μm) and 0.4 K (12 μm), with a peak at 01:00 local time. As expected, the spin-stabilized GEOsats revealed a smaller diurnal temperature cycle (mostly < 0.2 K) with inconsistent peak hours.

Diversity of vir Genes in Plasmodium vivax from Endemic Regions in the Republic of Korea: an Initial Evaluation.

PubMed

Son, Ui-Han; Dinzouna-Boutamba, Sylvatrie-Danne; Lee, Sanghyun; Yun, Hae Soo; Kim, Jung-Yeon; Joo, So-Young; Jeong, Sookwan; Rhee, Man Hee; Hong, Yeonchul; Chung, Dong-Il; Kwak, Dongmi; Goo, Youn-Kyoung

2017-04-01

Variant surface antigens (VSAs) encoded by pir families are considered to be the key proteins used by many Plasmodium spp. to escape the host immune system by antigenic variation. This attribute of VSAs is a critical issue in the development of a novel vaccine. In this regard, a population genetic study of vir genes from Plasmodium vivax was performed in the Republic of Korea (ROK). Eighty-five venous blood samples and 4 of the vir genes, namely vir 27, vir 21, vir 12, and vir 4, were selected for study. The number of segregating sites (S), number of haplotypes (H), haplotype diversity (Hd), DNA diversity (π and Θ w ), and Tajima's D test value were conducted. Phylogenetic trees of each gene were constructed. The vir 21 (S=143, H=22, Hd=0.827) was the most genetically diverse gene, and the vir 4 (S=6, H=4, Hd=0.556) was the opposite one. Tajima's D values for vir 27 (1.08530, P >0.1), vir 12 (2.89007, P <0.01), and vir 21 (0.40782, P >0.1) were positive, and that of vir 4 (-1.32162, P >0.1) was negative. All phylogenetic trees showed 2 clades with no particular branching according to the geographical differences and cluster. This study is the first survey on the vir genes in ROK, providing information on the genetic level. The sample sequences from vir 4 showed a clear difference to the Sal-1 reference gene sequence, whereas they were very similar to those from Indian isolates.

Nanoparticle-Based Delivery of Anaplasma marginale Membrane Proteins; VirB9-1 and VirB10 Produced in the Pichia pastoris Expression System.

PubMed

Zhang, Bing; Cavallaro, Antonio S; Mody, Karishma T; Zhang, Jun; Deringer, James R; Brown, Wendy C; Mahony, Timothy J; Yu, Chengzhong; Mitter, Neena

2016-11-05

Bovine anaplasmosis or cattle-tick fever is a tick-borne haemolytic disease caused by the rickettsial haemoparasite Anaplasma marginale in tropical and subtropical areas of the world. While difficult to express, the proteins VirB9-1 and VirB10 are immunogenic components of the outer membrane type IV secretion system that have been identified as candidate antigens for vaccines targeting of A. marginale . Soluble VirB9-1 and VirB10 were successfully expressed using Pichia pastoris . When formulated with the self-adjuvanting silica vesicles, SV-100 (diameter: 50 nm, and pore entrance size: 6 nm), 200 µg of VirB9-1 and VirB10 were adsorbed per milligram of nanoparticle. The VirB9-1 and VirB10, SV-100 formulations were shown to induce higher antibody responses in mice compared to the QuilA formulations. Moreover, intracellular staining of selected cytokines demonstrated that both VirB9-1 and VirB10 formulations induced cell-mediated immune responses in mice. Importantly, the SV-100 VirB9-1 and VirB10 complexes were shown to specifically stimulate bovine T-cell linages derived from calves immunised with A. marginale outer membrane fractions, suggesting formulations will be useful for bovine immunisation and protection studies. Overall this study demonstrates the potential of self-adjuvanting silica vesicle formulations to address current deficiencies in vaccine delivery applications.

Mutational analysis of the transcriptional activator VirG of Agrobacterium tumefaciens.

PubMed Central

Scheeren-Groot, E P; Rodenburg, K W; den Dulk-Ras, A; Turk, S C; Hooykaas, P J

1994-01-01

To find VirG proteins with altered properties, the virG gene was mutagenized. Random chemical mutagenesis of single-stranded DNA containing the Agrobacterium tumefaciens virG gene led with high frequency to the inactivation of the gene. Sequence analysis showed that 29% of the mutants contained a virG gene with one single-base-pair substitution somewhere in the open reading frame. Thirty-nine different mutations that rendered the VirG protein inactive were mapped. Besides these inactive mutants, two mutants in which the vir genes were active even in the absence of acetosyringone were found on indicator plates. A VirG protein with an N54D substitution turned out to be able to induce a virB-lacZ reporter gene to a high level even in the absence of the inducer acetosyringone. A VirG protein with an I77V substitution exhibited almost no induction in the absence of acetosyringone but showed a maximum induction level already at low concentrations of acetosyringone. Images PMID:7961391

Surface plasmon resonance imaging reveals multiple binding modes of Agrobacterium transformation mediator VirE2 to ssDNA.

PubMed

Kim, Sanghyun; Zbaida, David; Elbaum, Michael; Leh, Hervé; Nogues, Claude; Buckle, Malcolm

2015-07-27

VirE2 is the major secreted protein of Agrobacterium tumefaciens in its genetic transformation of plant hosts. It is co-expressed with a small acidic chaperone VirE1, which prevents VirE2 oligomerization. After secretion into the host cell, VirE2 serves functions similar to a viral capsid in protecting the single-stranded transferred DNA en route to the nucleus. Binding of VirE2 to ssDNA is strongly cooperative and depends moreover on protein-protein interactions. In order to isolate the protein-DNA interactions, imaging surface plasmon resonance (SPRi) studies were conducted using surface-immobilized DNA substrates of length comparable to the protein-binding footprint. Binding curves revealed an important influence of substrate rigidity with a notable preference for poly-T sequences and absence of binding to both poly-A and double-stranded DNA fragments. Dissociation at high salt concentration confirmed the electrostatic nature of the interaction. VirE1-VirE2 heterodimers also bound to ssDNA, though by a different mechanism that was insensitive to high salt. Neither VirE2 nor VirE1-VirE2 followed the Langmuir isotherm expected for reversible monomeric binding. The differences reflect the cooperative self-interactions of VirE2 that are suppressed by VirE1. © The Author(s) 2015. Published by Oxford University Press on behalf of Nucleic Acids Research.

Clear-sky narrowband albedos derived from VIRS and MODIS

NASA Astrophysics Data System (ADS)

Sun-Mack, Sunny; Minnis, Patrick; Chen, Yan; Arduini, Robert F.

2004-02-01

The Clouds and Earth"s Radiant Energy System (CERES) project is using multispectral imagers, the Visible Infrared Scanner (VIRS) on the tropical Rainfall Measuring Mission (TRMM) satellite and the Moderate Resolution Imaging Spectroradiometer (MODIS) on Terra, operating since spring 2000, and Aqua, operating since summer 2002, to provide cloud and clear-sky properties at various wavelengths. This paper presents the preliminary results of an analysis of the CERES clear-sky reflectances to derive a set top-of-atmosphere clear sky albedo for 0.65, 0.86, 1.6, 2.13 μm, for all major surface types using the combined MODIS and VIRS datasets. The variability of snow albedo with surface type is examined using MODIS data. Snow albedo was found to depend on the vertical structure of the vegetation. At visible wavelengths, it is least for forested areas and greatest for smooth desert and tundra surfaces. At 1.6 and 2.1-μm, the snow albedos are relatively insensitive to the underlying surface because snow decreases the reflectance. Additional analyses using all of the MODIS results will provide albedo models that should be valuable for many remote sensing, simulation and radiation budget studies.

Immunization with Brucella VirB Proteins Reduces Organ Colonization in Mice through a Th1-Type Immune Response and Elicits a Similar Immune Response in Dogs

PubMed Central

Pollak, Cora N.; Wanke, María Magdalena; Estein, Silvia M.; Delpino, M. Victoria; Monachesi, Norma E.; Comercio, Elida A.; Fossati, Carlos A.

2014-01-01

VirB proteins from Brucella spp. constitute the type IV secretion system, a key virulence factor mediating the intracellular survival of these bacteria. Here, we assessed whether a Th1-type immune response against VirB proteins may protect mice from Brucella infection and whether this response can be induced in the dog, a natural host for Brucella. Splenocytes from mice immunized with VirB7 or VirB9 responded to their respective antigens with significant and specific production of gamma interferon (IFN-γ), whereas interleukin-4 (IL-4) was not detected. Thirty days after an intraperitoneal challenge with live Brucella abortus, the spleen load of bacteria was almost 1 log lower in mice immunized with VirB proteins than in unvaccinated animals. As colonization reduction seemed to correlate with a Th1-type immune response against VirB proteins, we decided to assess whether such a response could be elicited in the dog. Peripheral blood mononuclear cells (PBMCs) from dogs immunized with VirB proteins (three subcutaneous doses in QuilA adjuvant) produced significantly higher levels of IFN-γ than cells from control animals upon in vitro stimulation with VirB proteins. A skin test to assess specific delayed-type hypersensitivity was positive in 4 out of 5 dogs immunized with either VirB7 or VirB9. As both proteins are predicted to locate in the outer membrane of Brucella organisms, the ability of anti-VirB antibodies to mediate complement-dependent bacteriolysis of B. canis was assessed in vitro. Sera from dogs immunized with either VirB7 or VirB9, but not from those receiving phosphate-buffered saline (PBS), produced significant bacteriolysis. These results suggest that VirB-specific responses that reduce organ colonization by Brucella in mice can be also elicited in dogs. PMID:25540276

Immunization with Brucella VirB proteins reduces organ colonization in mice through a Th1-type immune response and elicits a similar immune response in dogs.

PubMed

Pollak, Cora N; Wanke, María Magdalena; Estein, Silvia M; Delpino, M Victoria; Monachesi, Norma E; Comercio, Elida A; Fossati, Carlos A; Baldi, Pablo C

2015-03-01

VirB proteins from Brucella spp. constitute the type IV secretion system, a key virulence factor mediating the intracellular survival of these bacteria. Here, we assessed whether a Th1-type immune response against VirB proteins may protect mice from Brucella infection and whether this response can be induced in the dog, a natural host for Brucella. Splenocytes from mice immunized with VirB7 or VirB9 responded to their respective antigens with significant and specific production of gamma interferon (IFN-γ), whereas interleukin-4 (IL-4) was not detected. Thirty days after an intraperitoneal challenge with live Brucella abortus, the spleen load of bacteria was almost 1 log lower in mice immunized with VirB proteins than in unvaccinated animals. As colonization reduction seemed to correlate with a Th1-type immune response against VirB proteins, we decided to assess whether such a response could be elicited in the dog. Peripheral blood mononuclear cells (PBMCs) from dogs immunized with VirB proteins (three subcutaneous doses in QuilA adjuvant) produced significantly higher levels of IFN-γ than cells from control animals upon in vitro stimulation with VirB proteins. A skin test to assess specific delayed-type hypersensitivity was positive in 4 out of 5 dogs immunized with either VirB7 or VirB9. As both proteins are predicted to locate in the outer membrane of Brucella organisms, the ability of anti-VirB antibodies to mediate complement-dependent bacteriolysis of B. canis was assessed in vitro. Sera from dogs immunized with either VirB7 or VirB9, but not from those receiving phosphate-buffered saline (PBS), produced significant bacteriolysis. These results suggest that VirB-specific responses that reduce organ colonization by Brucella in mice can be also elicited in dogs. Copyright © 2015, American Society for Microbiology. All Rights Reserved.

Groups and the Entropy Floor: XMM-Newton Observations of Two Groups

NASA Technical Reports Server (NTRS)

Mushotzky, R. F.; Figueroa-Feliciano, E.; Loewenstein, M.; Snowden, S. L.

2002-01-01

Using XMM-Newton spatially resolved X-ray imaging spectroscopy we obtain the temperature, density, entropy, gas mass, and total mass profiles for two groups of galaxies out to approximately 0.3 R(sub vir)(R(sub vir), the virial radius). Our density profiles agree well with those derived previously, and the temperature data are broadly consistent with previous results but are considerably more precise. Both of these groups are at the mass scale of 2x10(exp 13) M(solar mass), but have rather different properties. Both have considerably lower gas mass fractions at r < 0.3 R(sub vir), than the rich clusters. NGC2563, one of the least luminous groups for its X-ray temperature, has a very low gas mass fraction of approximately 0.004 inside 0.1 R(sub vir), which increases with radius. NGC4325, one of the most luminous groups at the same average temperature, has a higher gas mass fraction of 0.02. The entropy profiles and the absolute values of the entropy as a function of virial radius also differ, with NGC4325 having a value of approximately 100 keV cm(exp -2) and NGC2563 a value of approximately 300 keV cm(exp -2) at r approximately 0.1 R(sub vir). For both groups the profiles rise monotonically with radius and there is no sign of an entropy 'floor'. These results are inconsistent with pre-heating scenarios that have been developed to explain a possible entropy floor in groups, but are broadly consistent with models of structure formation that include the effects of heating and/or the cooling of the gas. The total entropy in these systems provides a strong constraint on all models of galaxy and group formation, and on the poorly defined feedback process that controls the transformation of gas into stars and thus the formation of structure in the universe.

A Homologue of an Operon Required for DNA Transfer in Agrobacterium Is Required in Brucella abortus for Virulence and Intracellular Multiplication

PubMed Central

Sieira, Rodrigo; Comerci, Diego J.; Sánchez, Daniel O.; Ugalde, Rodolfo A.

2000-01-01

As part of a Brucella abortus 2308 genome project carried out in our laboratory, we identified, cloned, and sequenced a genomic DNA fragment containing a locus (virB) highly homologous to bacterial type IV secretion systems. The B. abortus virB locus is a collinear arrangement of 13 open reading frames (ORFs). Between virB1 and virB2 and downstream of ORF12, two degenerated, palindromic repeat sequences characteristic of Brucella intergenic regions were found. Gene reporter studies demonstrated that the B. abortus virB locus constitutes an operon transcribed from virB1 which is turned on during the stationary phase of growth. A B. abortus polar virB1 mutant failed to replicate in HeLa cells, indicating that the virB operon plays a critical role in intracellular multiplication. Mutants with polar and nonpolar mutations introduced in virB10 showed different behaviors in mice and in the HeLa cell infection assay, suggesting that virB10 per se is necessary for the correct function of this type IV secretion apparatus. Mouse infection assays demonstrated that the virB operon constitutes a major determinant of B. abortus virulence. It is suggested that putative effector molecules secreted by this type IV secretion system determine routing of B. abortus to an endoplasmic reticulum-related replication compartment. PMID:10940027

Gene regulation by the VirS/VirR system in Clostridium perfringens.

PubMed

Ohtani, Kaori

2016-10-01

The Gram-positive anaerobic spore-forming rod, Clostridium perfringens, is widely distributed in nature, especially in soil and the gastrointestinal tract of humans and animals. C. perfringens produces many secreted toxins and enzymes that are involved in the pathogenesis of gas gangrane and gastrointestinal disease. One of the most important systems regulating the production of these proteins in C. perfringens is the VirS/VirR-VR-RNA signal transduction cascade. The Agr system also important for the regulation of toxin genes. VirS appears to sense the peptide produced by the Agr (accessory gene regulator) system. The VirS/VirR-VR-RNA cascade controls the pathogenesis of C. perfringens infections by regulating virulence related genes and genes for energy metabolism. These systems are important for the host cell-induced upregulation of toxin production. Copyright © 2016 Elsevier Ltd. All rights reserved.

From Macrocrystals to Microcrystals: A Strategy for Membrane Protein Serial Crystallography.

PubMed

Dods, Robert; Båth, Petra; Arnlund, David; Beyerlein, Kenneth R; Nelson, Garrett; Liang, Mengling; Harimoorthy, Rajiv; Berntsen, Peter; Malmerberg, Erik; Johansson, Linda; Andersson, Rebecka; Bosman, Robert; Carbajo, Sergio; Claesson, Elin; Conrad, Chelsie E; Dahl, Peter; Hammarin, Greger; Hunter, Mark S; Li, Chufeng; Lisova, Stella; Milathianaki, Despina; Robinson, Joseph; Safari, Cecilia; Sharma, Amit; Williams, Garth; Wickstrand, Cecilia; Yefanov, Oleksandr; Davidsson, Jan; DePonte, Daniel P; Barty, Anton; Brändén, Gisela; Neutze, Richard

2017-09-05

Serial protein crystallography was developed at X-ray free-electron lasers (XFELs) and is now also being applied at storage ring facilities. Robust strategies for the growth and optimization of microcrystals are needed to advance the field. Here we illustrate a generic strategy for recovering high-density homogeneous samples of microcrystals starting from conditions known to yield large (macro) crystals of the photosynthetic reaction center of Blastochloris viridis (RC vir ). We first crushed these crystals prior to multiple rounds of microseeding. Each cycle of microseeding facilitated improvements in the RC vir serial femtosecond crystallography (SFX) structure from 3.3-Å to 2.4-Å resolution. This approach may allow known crystallization conditions for other proteins to be adapted to exploit novel scientific opportunities created by serial crystallography. Copyright © 2017 Elsevier Ltd. All rights reserved.

Ceres composition as inferred by the VIR-Dawn imaging spectrometer

NASA Astrophysics Data System (ADS)

Longobardo, Andrea

2016-07-01

The NASA's Dawn spacecraft [1] is orbiting around Ceres since early 2015. The Dawn mission to Ceres is divided in five stages, characterized by different altitudes above the Ceres mean surface. These five stages correspond with the different phases of the mission,, i.e. Approach, Rotational Characterization, Survey, High Altitude Mapping Orbit (HAMO) and Low Altitude Mapping Orbit (LAMO). Each phase is characterized by an increasing spatial resolution linked with the spacecraft altitude. The VIR imaging spectrometer [2] on board the Dawn spacecraft is providing a huge amount of data and giving an essential contribution to understand the Ceres composition and to give constraint about its evolution. VIR observations revealed that Ceres is a dark body, with an average albedo of 0.08 measured at 1.2 mm [3]. However, specific features seen at the local scale may show substantially higher albedo (i.e. greater than 0.2), especially in Occator, Haulani and Oxo craters [4]. VIR data reveal that the Ceres visible and near-infrared spectra (wavelength range from 0.25 to 5 mm) are mainly characterized by the following absorptions: - 2.7 mm band, ascribed to OH-bearing materials [5] and distributed across the Ceres surface; - 3.05 mm band, ascribed to NH4-bearing materials [5] and also ubiquitous on the Ceres surface; - 3.3-3.5 mm complex and 3.9 mm band, ascribed to carbonates [4] and observed only at some locations [6]. The presence of these features, in particular the 3.05 mm band, indicate widespread occurrence of ammoniated phyllosilicates [5], which could be mixed with carbonates in specific regions. The phyllosilicates composition is basically homogeneous across the Ceres surface, as suggested by the low variation of 2.7 mm and 3.05 mm band centers [7]. The presence of ammonia suggests the presence of outer Solar System materials, which could have been brought in the Main Asteroid Belt and accreted during the Ceres formation [8]. Alternatively, Ceres itself could have been formed in the outer Solar System before to migrate in its actual location [9]. References [1] Russell, C.T. et al., Science, 336, 684, 2012 [2] De Sanctis M.C. et al., Space Sci. Rev., 163, 329-336, 2011 [3] Longobardo, A. et al., LPSC abstract, #2239, 2016 [4] De Sanctis, M.C. et al., LPSC abstract, #1832, 2016 [5] De Sanctis, M.C. et al., Nature, 528, 241-244, 2015 [6] Palomba, E. et al., LPSC abstract, #2166, 2016 [7] Ammannito, E. et al., LPSC abstract, #3020, 2016 [8] Johansen, A. et al., Sci. Adv. 1, 1500109, 2015 [9] McKinnon, W.B. et al., Proc. Conf. Asteroids, Comets, Meteors, # 6475, 2012

Modelling the atmosphere of the carbon-rich Mira RU Virginis

NASA Astrophysics Data System (ADS)

Rau, G.; Paladini, C.; Hron, J.; Aringer, B.; Groenewegen, M. A. T.; Nowotny, W.

2015-11-01

Context. We study the atmosphere of the carbon-rich Mira RU Vir using the mid-infrared high spatial resolution interferometric observations from VLTI/MIDI. Aims: The aim of this work is to analyse the atmosphere of the carbon-rich Mira RU Vir with hydrostatic and dynamic models, in this way deepening the knowledge of the dynamic processes at work in carbon-rich Miras. Methods: We compare spectro-photometric and interferometric measurements of this carbon-rich Mira AGB star with the predictions of different kinds of modelling approaches (hydrostatic model atmospheres plus MOD-More Of Dusty, self-consistent dynamic model atmospheres). A geometric model fitting tool is used for a first interpretation of the interferometric data. Results: The results show that a joint use of different kinds of observations (photometry, spectroscopy, interferometry) is essential for shedding light on the structure of the atmosphere of a carbon-rich Mira. The dynamic model atmospheres fit the ISO spectrum well in the wavelength range λ = [2.9,25.0] μm. Nevertheless, a discrepancy is noticeable both in the SED (visible) and in the interferometric visibilities (shape and level), which is a possible explanation are intra-/inter-cycle variations in the dynamic model atmospheres, as well as in the observations. The presence of a companion star and/or a disk or a decrease in mass loss within the past few hundred years cannot be excluded, but these explanations are considered unlikely. Based on observations made with ESO telescopes at La Silla Paranal Observatory under programme IDs: 085.D-0756 and 093. D-0708.Appendix A is available in electronic form at http://www.aanda.org

The 2.5 Å Structure of the Enterococcus Conjugation Protein TraM resembles VirB8 Type IV Secretion Proteins*

PubMed Central

Goessweiner-Mohr, Nikolaus; Grumet, Lukas; Arends, Karsten; Pavkov-Keller, Tea; Gruber, Christian C.; Gruber, Karl; Birner-Gruenberger, Ruth; Kropec-Huebner, Andrea; Huebner, Johannes; Grohmann, Elisabeth; Keller, Walter

2013-01-01

Conjugative plasmid transfer is the most important means of spreading antibiotic resistance and virulence genes among bacteria and therefore presents a serious threat to human health. The process requires direct cell-cell contact made possible by a multiprotein complex that spans cellular membranes and serves as a channel for macromolecular secretion. Thus far, well studied conjugative type IV secretion systems (T4SS) are of Gram-negative (G−) origin. Although many medically relevant pathogens (e.g., enterococci, staphylococci, and streptococci) are Gram-positive (G+), their conjugation systems have received little attention. This study provides structural information for the transfer protein TraM of the G+ broad host range Enterococcus conjugative plasmid pIP501. Immunolocalization demonstrated that the protein localizes to the cell wall. We then used opsonophagocytosis as a novel tool to verify that TraM was exposed on the cell surface. In these assays, antibodies generated to TraM recruited macrophages and enabled killing of pIP501 harboring Enteroccocus faecalis cells. The crystal structure of the C-terminal, surface-exposed domain of TraM was determined to 2.5 Å resolution. The structure, molecular dynamics, and cross-linking studies indicated that a TraM trimer acts as the biological unit. Despite the absence of sequence-based similarity, TraM unexpectedly displayed a fold similar to the T4SS VirB8 proteins from Agrobacterium tumefaciens and Brucella suis (G−) and to the transfer protein TcpC from Clostridium perfringens plasmid pCW3 (G+). Based on the alignments of secondary structure elements of VirB8-like proteins from mobile genetic elements and chromosomally encoded T4SS from G+ and G− bacteria, we propose a new classification scheme of VirB8-like proteins. PMID:23188825

Nopaline-type Ti plasmid of Agrobacterium encodes a VirF-like functional F-box protein.

PubMed

Lacroix, Benoît; Citovsky, Vitaly

2015-11-20

During Agrobacterium-mediated genetic transformation of plants, several bacterial virulence (Vir) proteins are translocated into the host cell to facilitate infection. One of the most important of such translocated factors is VirF, an F-box protein produced by octopine strains of Agrobacterium, which presumably facilitates proteasomal uncoating of the invading T-DNA from its associated proteins. The presence of VirF also is thought to be involved in differences in host specificity between octopine and nopaline strains of Agrobacterium, with the current dogma being that no functional VirF is encoded by nopaline strains. Here, we show that a protein with homology to octopine VirF is encoded by the Ti plasmid of the nopaline C58 strain of Agrobacterium. This protein, C58VirF, possesses the hallmarks of functional F-box proteins: it contains an active F-box domain and specifically interacts, via its F-box domain, with SKP1-like (ASK) protein components of the plant ubiquitin/proteasome system. Thus, our data suggest that nopaline strains of Agrobacterium have evolved to encode a functional F-box protein VirF.

The VirSR Two-Component Signal Transduction System Regulates NetB Toxin Production in Clostridium perfringens▿

PubMed Central

Cheung, Jackie K.; Keyburn, Anthony L.; Carter, Glen P.; Lanckriet, Anouk L.; Van Immerseel, Filip; Moore, Robert J.; Rood, Julian I.

2010-01-01

Clostridium perfringens causes several diseases in domestic livestock, including necrotic enteritis in chickens, which is of concern to the poultry industry due to its health implications and associated economic cost. The novel pore-forming toxin NetB is a critical virulence factor in the pathogenesis of this disease. In this study, we have examined the regulation of NetB toxin production. In C. perfringens, the quorum sensing-dependent VirSR two-component signal transduction system regulates genes encoding several toxins and extracellular enzymes. Analysis of the sequence upstream of the netB gene revealed the presence of potential DNA binding sites, or VirR boxes, that are recognized by the VirR response regulator. In vitro binding experiments showed that purified VirR was able to recognize and bind to these netB-associated VirR boxes. Furthermore, using a reporter gene assay, the netB VirR boxes were shown to be functional. Mutation of the virR gene in two avian C. perfringens strains was shown to significantly reduce the production of the NetB toxin; culture supernatants derived from these strains were no longer cytotoxic to Leghorn male hepatoma cells. Complementation with the virRS operon restored the toxin phenotypes to wild type. The results also showed that the VirSR two-component system regulates the expression of netB at the level of transcription. We postulate that in the gastrointestinal tract of infected birds, NetB production is upregulated when the population of C. perfringens cells reaches a threshold level that leads to activation of the VirSR system. PMID:20457789

Magnetic field topology of the unique chemically peculiar star CU Virginis

NASA Astrophysics Data System (ADS)

Kochukhov, O.; Lüftinger, T.; Neiner, C.; Alecian, E.; MiMeS Collaboration

2014-05-01

Context. The late-B, magnetic, chemically peculiar star CU Vir is one of the fastest rotators among the intermediate-mass stars with strong fossil magnetic fields. It shows a prominent rotational modulation of the spectral energy distribution and absorption line profiles due to chemical spots and exhibits a unique, strongly beamed variable radio emission. Aims: Little is known about the magnetic field topology of CU Vir. In this study, we aim to derive detailed maps of the magnetic field distribution over the surface of this star for the first time. Methods: We use high-resolution spectropolarimetric observations covering the entire rotational period. These data are interpreted using a multi-line technique of least-squares deconvolution (LSD) and a new Zeeman Doppler imaging code, which is based on detailed polarised radiative transfer modelling of the Stokes I and V LSD profiles. This new magnetic inversion approach relies on the spectrum synthesis calculations over the full wavelength range that is covered by observations and does not assume that the LSD profiles behave as a single spectral line with mean parameters. Results: We present magnetic and chemical abundance maps derived from the Si and Fe lines. Mean polarisation profiles of both elements reveal a significant departure of CU Vir's magnetic field topology from the commonly assumed axisymmetric dipolar configuration. The field of CU Vir is dipolar-like but clearly non-axisymmetric, showing a large difference in the field strength between the regions of opposite polarity. The main relative abundance depletion features in both Si and Fe maps coincide with the weak-field region in the magnetic map. Conclusions: The detailed information on the distorted dipolar magnetic field topology of CU Vir provided by our study is essential for understanding chemical spot formation, radio emission, and rotational period variation of this star. Based on observations obtained at the Bernard Lyot Telescope (USR5026) operated by the Observatoire Midi-Pyrénées, Université de Toulouse (Paul Sabatier), Centre National de la Recherche Scientifique of France.

Organic matter on Ceres: spectral analysis of the organic-rich area

NASA Astrophysics Data System (ADS)

Ammannito, E.; De Sanctis, M. C.; Vinogradoff, V.; Ciarniello, M.; Raponi, A.; Carrorro, F. G.; Raymond, C. A.; Russell, C. T.

2017-12-01

VIR, the Visible and InfraRed mapping spectrometer onboard the Dawn mission, has detected the presence of aliphatic carbons with the 3.3-3.5 µm bands, near the Ernutet crater [1]. The origin of this Organic Matter (OM) is likely related to an endogenous source but exogenic delivery cannot be excluded [1,2,6]. After the first identification of this organic rich (OR) area, mainly based on data taken by VIR [3] at a resolution of about 1 km/pixel, here we used VIR data obtained in the following orbital phases, at a resolution of about 400 m/pixel to analyze more closely the Ernutet organic-rich area. We investigated the possible correlation of the OM with other minerals present in the area. These observations can shed new light on the origin of such organic material. Different spectra with signatures of organics, corresponding to different areas around the Ernutet crater, have been extracted from the VIR data. We observed that several small areas are characterized by the presence of OM mixed with other species such as sodium carbonates and ammonium compounds. In particular, there is an area that shows a strong and large absorption at 3.07 µm along with a strong organic band at 3.4 µm and an enhanced carbonate band relative to the average Ceres background. Analyzing the absorption at 3.07 µm, we discovered that the band has several minima, with a strong minimum centered at 2.99-3.0 microns, other minima at 2.96, 3.11, 3.14-3.18 µm, as well as the usual minima at 3.07 µm. Several functional groups are active in the 2.9-3.2 µm region. CH, NH, and OH stretching modes indeed create absorptions at these wavelengths and identifying the molecules responsible for such features is not easy. Nevertheless, the presence of Na-carbonates, yet observed on other regions of Ceres (4,5) and the presence of these additional bands can reinforce the endogenic origin of the organics of Ceres. Their possible formation processes are described in a companion abstract (6). [1] De Sanctis et al., (2017) Science, 355, 719-722. [2] Pieters et al., (2017) submitted. [3] De sanctis et al., SSR, 2011. [4] De Sanctis et al., (2016) Nature 536, 54- 57.[5] Carrozzo et al., 2017, Science ADV.[6] Vinogradoff et al. 2017 AGU.

Differential composition of culture supernatants from wild-type Brucella abortus and its isogenic virB mutants.

PubMed

Delpino, M Victoria; Comerci, Diego J; Wagner, Mary Ann; Eschenbrenner, Michel; Mujer, Cesar V; Ugalde, Rodolfo A; Fossati, Carlos A; Baldi, Pablo C; Delvecchio, Vito G

2009-07-01

The virB genes coding type IV secretion system are necessary for the intracellular survival and replication of Brucella spp. In this study, extracellular proteins from B. abortus 2308 (wild type, WT) and its isogenic virB10 polar mutant were compared. Culture supernatants harvested in the early stationary phase were concentrated and subjected to 2D electrophoresis. Spots present in the WT strain but absent in the virB10 mutant (differential spots) were considered extracellular proteins released in a virB-related manner, and were identified by MALDI-TOF analysis and matching with Brucella genomes. Among the 11 differential proteins identified, DnaK chaperone (Hsp70), choloylglycine hydrolase (CGH) and a peptidyl-prolyl cis-trans isomerase (PPIase) were chosen for further investigation because of their homology with extracellular and/or virulence factors from other bacteria. The three proteins were obtained in recombinant form and specific monoclonal antibodies (mAbs) were prepared. By Western blot with these mAbs, the three proteins were detected in supernatants from the WT but not in those from the virB10 polar mutant or from strains carrying non-polar mutations in virB10 or virB11 genes. These results suggest that the expression of virB genes affects the extracellular release of DnaK, PPIase and CGH, and possibly other proteins from B. abortus.

Epsilon-toxin production by Clostridium perfringens type D strain CN3718 is dependent upon the agr operon but not the VirS/VirR two-component regulatory system.

PubMed

Chen, Jianming; Rood, Julian I; McClane, Bruce A

2011-01-01

Clostridium perfringens type B and D strains cause enterotoxemias and enteritis in livestock after proliferating in the intestines and producing epsilon-toxin (ETX), alpha-toxin (CPA), and, usually, perfringolysin O (PFO). Although ETX is one of the most potent bacterial toxins, the regulation of ETX production by type B or D strains remains poorly understood. The present work determined that the type D strain CN3718 upregulates production of ETX upon close contact with enterocyte-like Caco-2 cells. This host cell-induced upregulation of ETX expression was mediated at the transcriptional level. Using an isogenic agrB null mutant and complemented strain, the agr operon was shown to be required when CN3718 produces ETX in broth culture or, via a secreted signal consistent with a quorum-sensing (QS) effect, upregulates ETX production upon contact with host cells. These findings provide the first insights into the regulation of ETX production, as well as additional evidence that the Agr-like QS system functions as a global regulator of C. perfringens toxin production. Since it was proposed previously that the Agr-like QS system regulates C. perfringens gene expression via the VirS/VirR two-component regulatory system, an isogenic virR null mutant of CN3718 was constructed to evaluate the importance of VirS/VirR for CN3718 toxin production. This mutation affected production of CPA and PFO, but not ETX, by CN3718. These results provide the first indication that C. perfringens toxin expression regulation by the Agr-like quorum-sensing system may not always act via the VirS/VirR two-component system. IMPORTANCE Mechanisms by which Clostridium perfringens type B and D strains regulate production of epsilon-toxin (ETX), a CDC class B select toxin, are poorly understood. Production of several other toxins expressed by C. perfringens is wholly or partially regulated by both the Agr-like quorum-sensing (QS) system and the VirS/VirR two-component regulatory system, so the present study tested whether ETX expression by type D strain CN3718 also requires these regulatory systems. The agr operon was shown to be essential for signaling CN3718 to produce ETX in broth culture or to upregulate ETX production upon close contact with enterocyte-like Caco-2 cells, which may have pathogenic relevance since ETX is produced intestinally. However, ETX production remained at wild-type levels after inactivation of the VirS/VirR system in CN3718. These findings provide the first information regarding regulation of ETX production and suggest Agr-like QS toxin production regulation in C. perfringens does not always require the VirS/VirR system.

Bartonella henselae trimeric autotransporter adhesin BadA expression interferes with effector translocation by the VirB/D4 type IV secretion system.

PubMed

Lu, Yun-Yueh; Franz, Bettina; Truttmann, Matthias C; Riess, Tanja; Gay-Fraret, Jérémie; Faustmann, Marco; Kempf, Volkhard A J; Dehio, Christoph

2013-05-01

The Gram-negative, zoonotic pathogen Bartonella henselae is the aetiological agent of cat scratch disease, bacillary angiomatosis and peliosis hepatis in humans. Two pathogenicity factors of B. henselae - each displaying multiple functions in host cell interaction - have been characterized in greater detail: the trimeric autotransporter Bartonella adhesin A (BadA) and the type IV secretion system VirB/D4 (VirB/D4 T4SS). BadA mediates, e.g. binding to fibronectin (Fn), adherence to endothelial cells (ECs) and secretion of vascular endothelial growth factor (VEGF). VirB/D4 translocates several Bartonella effector proteins (Beps) into the cytoplasm of infected ECs, resulting, e.g. in uptake of bacterial aggregates via the invasome structure, inhibition of apoptosis and activation of a proangiogenic phenotype. Despite this knowledge of the individual activities of BadA or VirB/D4 it is unknown whether these major virulence factors affect each other in their specific activities. In this study, expression and function of BadA and VirB/D4 were analysed in a variety of clinical B. henselae isolates. Data revealed that most isolates have lost expression of either BadA or VirB/D4 during in vitro passages. However, the phenotypic effects of coexpression of both virulence factors was studied in one clinical isolate that was found to stably coexpress BadA and VirB/D4, as well as by ectopic expression of BadA in a strain expressing VirB/D4 but not BadA. BadA, which forms a dense layer on the bacterial surface, negatively affected VirB/D4-dependent Bep translocation and invasome formation by likely preventing close contact between the bacterial cell envelope and the host cell membrane. In contrast, BadA-dependent Fn binding, adhesion to ECs and VEGF secretion were not affected by a functional VirB/D4 T4SS. The obtained data imply that the essential virulence factors BadA and VirB/D4 are likely differentially expressed during different stages of the infection cycle of Bartonella. © 2012 Blackwell Publishing Ltd.

Structural Insight into How Bacteria Prevent Interference between Multiple Divergent Type IV Secretion Systems

PubMed Central

Phan, Isabelle Q. H.; Scheib, Holger; Subramanian, Sandhya; Edwards, Thomas E.; Lehman, Stephanie S.; Piitulainen, Hanna; Sayeedur Rahman, M.; Rennoll-Bankert, Kristen E.; Staker, Bart L.; Taira, Suvi; Stacy, Robin; Myler, Peter J.; Azad, Abdu F.

2015-01-01

ABSTRACT Prokaryotes use type IV secretion systems (T4SSs) to translocate substrates (e.g., nucleoprotein, DNA, and protein) and/or elaborate surface structures (i.e., pili or adhesins). Bacterial genomes may encode multiple T4SSs, e.g., there are three functionally divergent T4SSs in some Bartonella species (vir, vbh, and trw). In a unique case, most rickettsial species encode a T4SS (rvh) enriched with gene duplication. Within single genomes, the evolutionary and functional implications of cross-system interchangeability of analogous T4SS protein components remains poorly understood. To lend insight into cross-system interchangeability, we analyzed the VirB8 family of T4SS channel proteins. Crystal structures of three VirB8 and two TrwG Bartonella proteins revealed highly conserved C-terminal periplasmic domain folds and dimerization interfaces, despite tremendous sequence divergence. This implies remarkable structural constraints for VirB8 components in the assembly of a functional T4SS. VirB8/TrwG heterodimers, determined via bacterial two-hybrid assays and molecular modeling, indicate that differential expression of trw and vir systems is the likely barrier to VirB8-TrwG interchangeability. We also determined the crystal structure of Rickettsia typhi RvhB8-II and modeled its coexpressed divergent paralog RvhB8-I. Remarkably, while RvhB8-I dimerizes and is structurally similar to other VirB8 proteins, the RvhB8-II dimer interface deviates substantially from other VirB8 structures, potentially preventing RvhB8-I/RvhB8-II heterodimerization. For the rvh T4SS, the evolution of divergent VirB8 paralogs implies a functional diversification that is unknown in other T4SSs. Collectively, our data identify two different constraints (spatiotemporal for Bartonella trw and vir T4SSs and structural for rvh T4SSs) that mediate the functionality of multiple divergent T4SSs within a single bacterium. PMID:26646013

A bipartite signal mediates the transfer of type IV secretion substrates of Bartonella henselae into human cells.

PubMed

Schulein, Ralf; Guye, Patrick; Rhomberg, Thomas A; Schmid, Michael C; Schröder, Gunnar; Vergunst, Annette C; Carena, Ilaria; Dehio, Christoph

2005-01-18

Bacterial type IV secretion (T4S) systems mediate the transfer of macromolecular substrates into various target cells, e.g., the conjugative transfer of DNA into bacteria or the transfer of virulence proteins into eukaryotic host cells. The T4S apparatus VirB of the vascular tumor-inducing pathogen Bartonella henselae causes subversion of human endothelial cell (HEC) function. Here we report the identification of multiple protein substrates of VirB, which, upon translocation into HEC, mediate all known VirB-dependent cellular changes. These Bartonella-translocated effector proteins (Beps) A-G are encoded together with the VirB system and the T4S coupling protein VirD4 on a Bartonella-specific pathogenicity island. The Beps display a modular architecture, suggesting an evolution by extensive domain duplication and reshuffling. The C terminus of each Bep harbors at least one copy of the Bep-intracellular delivery domain and a short positively charged tail sequence. This biparte C terminus constitutes a transfer signal that is sufficient to mediate VirB/VirD4-dependent intracellular delivery of reporter protein fusions. The Bep-intracellular delivery domain is also present in conjugative relaxases of bacterial conjugation systems. We exemplarily show that the C terminus of such a conjugative relaxase mediates protein transfer through the Bartonella henselae VirB/VirD4 system into HEC. Conjugative relaxases may thus represent the evolutionary origin of the here defined T4S signal for protein transfer into human cells.

Genetic analysis of a region of the Bordetella pertussis chromosome encoding filamentous hemagglutinin and the pleiotropic regulatory locus vir.

PubMed Central

Stibitz, S; Weiss, A A; Falkow, S

1988-01-01

The vir locus of Bordetella pertussis apparently encodes a trans-acting positive regulator that is required for the coordinate expression of genes associated with virulence: pertussis toxin, filamentous hemagglutinin (FHA), hemolysin, and adenylate cyclase toxin. DNA clones of vir and of genes required for the synthesis of some of the factors under vir control were obtained with DNA probes from the chromosomal DNA surrounding sites of Tn5 insertion mutations that inactivated those genes. Two vir clones were found which also contained genes required for the proper expression of FHA in B. pertussis. The plasmids which contained both the fha and vir genes expressed immunologically reactive FHA in Escherichia coli, as detected by colony blots, whereas plasmids which contained only fha or vir were negative in this assay. The regulation of FHA production in E. coli, as in B. pertussis, was temperature dependent and inhibited by high concentrations of either magnesium ions or nicotinic acid, indicating that the sequences cloned in E. coli contained the information required to preserve the physiological responses seen in B. pertussis. Further characterization of the vir-fha clones by Tn5 mutagenesis in E. coli and by the return of cloned sequences to B. pertussis in trans and to the B. pertussis chromosome led to the localization of the vir locus, the structural gene for FHA, and genes that are possibly required for the synthesis and export of FHA. Images PMID:2898470

A bipartite signal mediates the transfer of type IV secretion substrates of Bartonella henselae into human cells

PubMed Central

Schulein, Ralf; Guye, Patrick; Rhomberg, Thomas A.; Schmid, Michael C.; Schröder, Gunnar; Vergunst, Annette C.; Carena, Ilaria; Dehio, Christoph

2005-01-01

Bacterial type IV secretion (T4S) systems mediate the transfer of macromolecular substrates into various target cells, e.g., the conjugative transfer of DNA into bacteria or the transfer of virulence proteins into eukaryotic host cells. The T4S apparatus VirB of the vascular tumor-inducing pathogen Bartonella henselae causes subversion of human endothelial cell (HEC) function. Here we report the identification of multiple protein substrates of VirB, which, upon translocation into HEC, mediate all known VirB-dependent cellular changes. These Bartonella-translocated effector proteins (Beps) A-G are encoded together with the VirB system and the T4S coupling protein VirD4 on a Bartonella-specific pathogenicity island. The Beps display a modular architecture, suggesting an evolution by extensive domain duplication and reshuffling. The C terminus of each Bep harbors at least one copy of the Bep-intracellular delivery domain and a short positively charged tail sequence. This biparte C terminus constitutes a transfer signal that is sufficient to mediate VirB/VirD4-dependent intracellular delivery of reporter protein fusions. The Bep-intracellular delivery domain is also present in conjugative relaxases of bacterial conjugation systems. We exemplarily show that the C terminus of such a conjugative relaxase mediates protein transfer through the Bartonella henselae VirB/VirD4 system into HEC. Conjugative relaxases may thus represent the evolutionary origin of the here defined T4S signal for protein transfer into human cells. PMID:15642951

Metabolic Control of Virulence Genes in Brucella abortus: HutC Coordinates virB Expression and the Histidine Utilization Pathway by Direct Binding to Both Promoters ▿ †

PubMed Central

Sieira, Rodrigo; Arocena, Gastón M.; Bukata, Lucas; Comerci, Diego J.; Ugalde, Rodolfo A.

2010-01-01

Type IV secretion systems (T4SS) are multicomponent machineries involved in the translocation of effector molecules across the bacterial cell envelope. The virB operon of Brucella abortus codes for a T4SS that is essential for virulence and intracellular multiplication of the bacterium in the host. Previous studies showed that the virB operon of B. abortus is tightly regulated within the host cells. In order to identify factors implicated in the control of virB expression, we searched for proteins of Brucella that directly bind to the virB promoter (PvirB). Using different procedures, we isolated a 27-kDa protein that binds specifically to PvirB. This protein was identified as HutC, the transcriptional repressor of the histidine utilization (hut) genes. Analyses of virB and hut promoter activity revealed that HutC exerts two different roles: it acts as a coactivator of transcription of the virB operon, whereas it represses the hut genes. Such activities were observed both intracellularly and in bacteria incubated under conditions that resemble the intracellular environment. Electrophoresis mobility shift assays (EMSA) and DNase I footprinting experiments revealed the structure, affinity, and localization of the HutC-binding sites and supported the regulatory role of HutC in both hut and virB promoters. Taken together, these results indicate that Brucella coopted the function of HutC to coordinate the Hut pathway with transcriptional regulation of the virB genes, probably as a way to sense its own metabolic state and develop adaptive responses to overcome intracellular host defenses. PMID:19854911

Transcriptome Reprogramming by Plasmid-Encoded Transcriptional Regulators Is Required for Host Niche Adaption of a Macrophage Pathogen

PubMed Central

Coulson, Garry B.; Miranda-CasoLuengo, Aleksandra A.; Miranda-CasoLuengo, Raúl; Wang, Xiaoguang; Oliver, Jenna; Willingham-Lane, Jennifer M.

2015-01-01

Rhodococcus equi is a facultative intracellular pathogen of macrophages, relying on the presence of a conjugative virulence plasmid harboring a 21-kb pathogenicity island (PAI) for growth in host macrophages. The PAI encodes a family of 6 virulence-associated proteins (Vaps) in addition to 20 other proteins. The contribution of these to virulence has remained unclear. We show that the presence of only 3 virulence plasmid genes (of 73 in total) is required and sufficient for intracellular growth. These include a single vap family member, vapA, and two PAI-located transcriptional regulators, virR and virS. Both transcriptional regulators are essential for wild-type-level expression of vapA, yet vapA expression alone is not sufficient to allow intracellular growth. A whole-genome microarray analysis revealed that VirR and VirS substantially integrate themselves into the chromosomal regulatory network, significantly altering the transcription of 18% of all chromosomal genes. This pathoadaptation involved significant enrichment of select gene ontologies, in particular, enrichment of genes involved in transport processes, energy production, and cellular metabolism, suggesting a major change in cell physiology allowing the bacterium to grow in the hostile environment of the host cell. The results suggest that following the acquisition of the virulence plasmid by an avirulent ancestor of R. equi, coevolution between the plasmid and the chromosome took place, allowing VirR and VirS to regulate the transcription of chromosomal genes in a process that ultimately promoted intracellular growth. Our findings suggest a mechanism for cooption of existing chromosomal traits during the evolution of a pathogenic bacterium from an avirulent saprophyte. PMID:26015480

Small-Molecule Inhibitor of the Shigella flexneri Master Virulence Regulator VirF

PubMed Central

Koppolu, Veerendra; Osaka, Ichie; Skredenske, Jeff M.; Kettle, Bria; Hefty, P. Scott; Li, Jiaqin

2013-01-01

VirF is an AraC family transcriptional activator that is required for the expression of virulence genes associated with invasion and cell-to-cell spread by Shigella flexneri, including multiple components of the type three secretion system (T3SS) machinery and effectors. We tested a small-molecule compound, SE-1 (formerly designated OSSL_051168), which we had identified as an effective inhibitor of the AraC family proteins RhaS and RhaR, for its ability to inhibit VirF. Cell-based reporter gene assays with Escherichia coli and Shigella, as well as in vitro DNA binding assays with purified VirF, demonstrated that SE-1 inhibited DNA binding and transcription activation (likely by blocking DNA binding) by VirF. Analysis of mRNA levels using real-time quantitative reverse transcription-PCR (qRT-PCR) further demonstrated that SE-1 reduced the expression of the VirF-dependent virulence genes icsA, virB, icsB, and ipaB in Shigella. We also performed eukaryotic cell invasion assays and found that SE-1 reduced invasion by Shigella. The effect of SE-1 on invasion required preincubation of Shigella with SE-1, in agreement with the hypothesis that SE-1 inhibited the expression of VirF-activated genes required for the formation of the T3SS apparatus and invasion. We found that the same concentrations of SE-1 had no detectable effects on the growth or metabolism of the bacterial cells or the eukaryotic host cells, respectively, indicating that the inhibition of invasion was not due to general toxicity. Overall, SE-1 appears to inhibit transcription activation by VirF, exhibits selectivity toward AraC family proteins, and has the potential to be developed into a novel antibacterial agent. PMID:24002059

Spectrophotometry of Epsilon Aur, 3295-8880 A

NASA Technical Reports Server (NTRS)

Lockwood, G. W.; Thompson, D. T.; Lutz, B. L.; Sowell, J.

1985-01-01

Spectrophotometric scans were obtained at 8 A resolution from 3295 to 8880 A on twenty nights before, during, and after the recent eclipse of epsilon Aurigae, beginning with a pre-eclipse observation on 5 March 1982 U.T. The observations were reduced to absolute flux using the standard stars 109 Vir or xi(2) Ceti. The data confirm that the eclipse is essentially gray over the entire visible spectrum, as others have noted from broadband photometry. High resolution echellograms (450 to 6700 A) made through mid-eclipse and the scans show changes in the equivalent widths of H alpha, Na D, and O I as large as a factor of two.

Dawn 2013-2015 Double-sided Mission Events Calendar

NASA Image and Video Library

2007-01-01

The mosaic of Visible and Infrared Spectrometer (VIR) data shows the location of the data acquired by VIR during the HAMO (high-altitude mapping orbit) phase of NASA's Dawn mission. VIR can image Vesta in a number of different wavelengths of light, ranging from the visible to the infrared part of the electromagnetic spectrum. This mosaic shows the images taken at a wavelength of 550 nanometers, which is in the visible part of the electromagnetic spectrum. During HAMO VIR obtained more than 4.6 million spectra of Vesta. It is clear from this image that the VIR observations are widely distributed across Vesta, which results in a global view of the spectral properties of Vesta's surface. http://photojournal.jpl.nasa.gov/catalog/PIA19368

Search for Olivine Spectral Signatures on the Surface of Vesta

NASA Technical Reports Server (NTRS)

Palomba, E.; De Sanctis, M. C.; Ammannito, E.; Capaccioni, F.; Capria, M. T.; Farina, M.; Frigeri, A.; Longobardo, A.; Tosi, F.; Zambon, F.;

The chimeric VirA-tar receptor protein is locked into a highly responsive state.

PubMed Central

Turk, S C; van Lange, R P; Sonneveld, E; Hooykaas, P J

1993-01-01

The wild-type VirA protein is known to be responsive not only to phenolic compounds but also to sugars via the ChvE protein (G. A. Cangelosi, R. G. Ankenbauer, and E. W. Nester, Proc. Natl. Acad. Sci. USA 87:6708-6712, 1990, and N. Shimoda, A. Toyoda-Yamamoto, J. Nagamine, S. Usami, M. Katayama, Y. Sakagami, and Y. Machida, Proc. Natl. Acad. Sci. USA 87:6684-6688, 1990). It is shown here that the mutant VirA(Ser-44, Arg-45) protein and the chimeric VirA-Tar protein are no longer responsive to sugars and the ChvE protein. However, whereas the chimeric VirA-Tar protein was found to be locked in a highly responsive state, the VirA(Ser-44, Arg-45) mutant protein appeared to be locked in a low responsive state. This difference turned out to be important for tumorigenicity of the host strains in virulence assays on Kalanchoë daigremontiana. Images PMID:8366057

Potential Novel Antibiotics from HTS Targeting the Virulence-regulating Transcription Factor, VirF, from Shigella flexneri

PubMed Central

Emanuele, Anthony A.; Adams, Nancy E.; Chen, Yi-Chen; Maurelli, Anthony T.; Garcia, George A.

2014-01-01

VirF is an AraC-type transcriptional regulator responsible for activating the transcription of virulence genes required for the intracellular invasion and cell-to-cell spread of Shigella flexneri. Gene disruption studies have validated VirF as a potential target for an anti-virulence therapy to treat shigellosis by determining that VirF is necessary for virulence, but not required for bacterial viability. Using a bacteria-based, β-galactosidase reporter assay we completed a high-throughput screening (HTS) campaign monitoring VirF activity in the presence of over 140,000 small molecules. From our screening campaign we identified five lead compounds to pursue in tissue-culture-based invasion and cell-to-cell spread assays and toxicity screens. Our observations of activity in these models for infection have validated our approach of targeting virulence regulation and have allowed us to identify a promising chemical scaffold from our HTS for hit-to-lead development. Interestingly, differential effects on invasion versus cell-to-cell spread suggest that the compounds’ efficacies may depend, in part, on the specific promoter that VirF is recognizing. PMID:24549153

Host cell-induced signaling causes Clostridium perfringens to upregulate production of toxins important for intestinal infections

PubMed Central

Chen, Jianming; Ma, Menglin; Uzal, Francisco A; McClane, Bruce A

2014-01-01

Clostridium perfringens causes enteritis and enterotoxemia in humans and livestock due to prolific toxin production. In broth culture, C. perfringens uses the Agr-like quorum sensing (QS) system to regulate production of toxins important for enteritis/enterotoxemia, including beta toxin (CPB), enterotoxin, and epsilon toxin (ETX). The VirS/VirR two-component regulatory system (TCRS) also controls CPB production in broth cultures. Both the Agr-like QS and VirS/VirR systems are important when C. perfringens senses enterocyte-like Caco-2 cells and responds by upregulating CPB production; however, only the Agr-like QS system is needed for host cell-induced ETX production. These in vitro observations have pathophysiologic relevance since both the VirS/VirR and Agr-like QS signaling systems are required for C. perfringens strain CN3685 to produce CPB in vivo and to cause enteritis or enterotoxemia. Thus, apparently upon sensing its presence in the intestines, C. perfringens utilizes QS and TCRS signaling to produce toxins necessary for intestinal virulence. PMID:24061146

The VirD2 pilot protein of Agrobacterium-transferred DNA interacts with the TATA box-binding protein and a nuclear protein kinase in plants

PubMed Central

Bakó, László; Umeda, Masaaki; Tiburcio, Antonio F.; Schell, Jeff; Koncz, Csaba

2003-01-01

The bacterial virulence protein VirD2 plays an important role in nuclear import and chromosomal integration of Agrobacterium-transferred DNA in fungal, plant, animal, and human cells. Here we show that in nuclei of alfalfa cells, VirD2 interacts with and is phosphorylated by CAK2Ms, a conserved plant ortholog of cyclin-dependent kinase-activating kinases. CAK2Ms binds to and phosphorylates the C-terminal regulatory domain of RNA polymerase II largest subunit, which can recruit the TATA box-binding protein. VirD2 is found in tight association with the TATA box-binding protein in vivo. These results indicate that recognition of VirD2 is mediated by widely conserved nuclear factors in eukaryotes. PMID:12900506

Accuracy evaluation of distance inverse square law in determining virtual electron source location in Siemens Primus linac.

PubMed

Douk, Hamid Shafaei; Aghamiri, Mahmoud Reza; Ghorbani, Mahdi; Farhood, Bagher; Bakhshandeh, Mohsen; Hemmati, Hamid Reza

2018-01-01

The aim of this study is to evaluate the accuracy of the inverse square law (ISL) method for determining location of virtual electron source ( S Vir ) in Siemens Primus linac. So far, different experimental methods have presented for determining virtual and effective electron source location such as Full Width at Half Maximum (FWHM), Multiple Coulomb Scattering (MCS), and Multi Pinhole Camera (MPC) and Inverse Square Law (ISL) methods. Among these methods, Inverse Square Law is the most common used method. Firstly, Siemens Primus linac was simulated using MCNPX Monte Carlo code. Then, by using dose profiles obtained from the Monte Carlo simulations, the location of S Vir was calculated for 5, 7, 8, 10, 12 and 14 MeV electron energies and 10 cm × 10 cm, 15 cm × 15 cm, 20 cm × 20 cm and 25 cm × 25 cm field sizes. Additionally, the location of S Vir was obtained by the ISL method for the mentioned electron energies and field sizes. Finally, the values obtained by the ISL method were compared to the values resulted from Monte Carlo simulation. The findings indicate that the calculated S Vir values depend on beam energy and field size. For a specific energy, with increase of field size, the distance of S Vir increases for most cases. Furthermore, for a special applicator, with increase of electron energy, the distance of S Vir increases for most cases. The variation of S Vir values versus change of field size in a certain energy is more than the variation of S Vir values versus change of electron energy in a certain field size. According to the results, it is concluded that the ISL method can be considered as a good method for calculation of S Vir location in higher electron energies (14 MeV).

“Agrolistic” transformation of plant cells: Integration of T-strands generated in planta

PubMed Central

Hansen, Geneviève; Chilton, Mary-Dell

1996-01-01

We describe a novel plant transformation technique, termed “agrolistic,” that combines the advantages of the Agrobacterium transformation system with the high efficiency of biolistic DNA delivery. Agrolistic transformation allows integration of the gene of interest without undesired vector sequence. The virulence genes virD1 and virD2 from Agrobacterium tumefaciens that are required in bacteria for excision of T-strands from the tumor-inducing plasmid were placed under the control of the CaMV35S promoter and codelivered with a target plasmid containing border sequences flanking the gene of interest. Transient expression assays in tobacco and in maize cells indicated that vir gene products caused strand-specific nicking in planta at the right border sequence, similar to VirD1/VirD2-catalyzed T-strand excision observed in Agrobacterium. Agrolistically transformed tobacco calli were obtained after codelivery of virD1 and virD2 genes together with a selectable marker flanked by border sequences. Some inserts exhibited right junctions with plant DNA that corresponded precisely to the sequence expected for T-DNA (portion of the tumor-inducing plasmid that is transferred to plant cells) insertion events. We designate these as “agrolistic” inserts, as distinguished from “biolistic” inserts. Both types of inserts were found in some transformed lines. The frequency of agrolistic inserts was 20% that of biolistic inserts. PMID:8962167

Agrobacterium-delivered virulence protein VirE2 is trafficked inside host cells via a myosin XI-K–powered ER/actin network

PubMed Central

Yang, Qinghua; Li, Xiaoyang; Tu, Haitao; Pan, Shen Q.

2017-01-01

Agrobacterium tumefaciens causes crown gall tumors on various plants by delivering transferred DNA (T-DNA) and virulence proteins into host plant cells. Under laboratory conditions, the bacterium is widely used as a vector to genetically modify a wide range of organisms, including plants, yeasts, fungi, and algae. Various studies suggest that T-DNA is protected inside host cells by VirE2, one of the virulence proteins. However, it is not clear how Agrobacterium-delivered factors are trafficked through the cytoplasm. In this study, we monitored the movement of Agrobacterium-delivered VirE2 inside plant cells by using a split-GFP approach in real time. Agrobacterium-delivered VirE2 trafficked via the endoplasmic reticulum (ER) and F-actin network inside plant cells. During this process, VirE2 was aggregated as filamentous structures and was present on the cytosolic side of the ER. VirE2 movement was powered by myosin XI-K. Thus, exogenously produced and delivered VirE2 protein can use the endogenous host ER/actin network for movement inside host cells. The A. tumefaciens pathogen hijacks the conserved host infrastructure for virulence trafficking. Well-conserved infrastructure may be useful for Agrobacterium to target a wide range of recipient cells and achieve a high efficiency of transformation. PMID:28242680

Brucella melitensis VirB12 recombinant protein is a potential marker for serodiagnosis of human brucellosis.

PubMed

Mirkalantari, Shiva; Zarnani, Amir-Hassan; Nazari, Mahboobeh; Irajian, Gholam Reza; Amirmozafari, Nour

2017-03-03

The numerous drawbacks of current serological tests for diagnosis of brucellosis which mainly results from cross reactivity with LPS from other gram-negative bacteria have generated an increasing interest to find more specific non-LPS antigens. Previous studies had indicated that Brucella VirB12 protein, a cell surface protein and component of type IV secretion system, induces antibody response during animal infection. However, this protein has not yet been tested as a serological diagnostic marker in human brucellosis. Recombinant VirB12 protein was prepared and evaluated the efficacy of it in an indirect enzyme-linked immunosorbent assay (ELISA) for brucellosis with sera collected from different region of Iran and the results were compared with a commercial ELISA kit. Sera from human brucellosis patients strongly reacted to the purified recombinant VirB12. The sensitivity, specificity, accuracy, negative predictive value and positive predictive value of recombinant VirB12-based ELISA related to the commercial-ELISA method were 87.8, 94, 90, 80 and 96.6% respectively. We concluded that antigenic VirB12 have a property value that can be considered as a candidate for using in serodiagnostic tests for human brucellosis.

Supernova Driving. IV. The Star-formation Rate of Molecular Clouds

NASA Astrophysics Data System (ADS)

Padoan, Paolo; Haugbølle, Troels; Nordlund, Åke; Frimann, Søren

2017-05-01

We compute the star-formation rate (SFR) in molecular clouds (MCs) that originate ab initio in a new, higher-resolution simulation of supernova-driven turbulence. Because of the large number of well-resolved clouds with self-consistent boundary and initial conditions, we obtain a large range of cloud physical parameters with realistic statistical distributions, which is an unprecedented sample of star-forming regions to test SFR models and to interpret observational surveys. We confirm the dependence of the SFR per free-fall time, SFRff, on the virial parameter, α vir, found in previous simulations, and compare a revised version of our turbulent fragmentation model with the numerical results. The dependences on Mach number, { M }, gas to magnetic pressure ratio, β, and compressive to solenoidal power ratio, χ at fixed α vir are not well constrained, because of random scatter due to time and cloud-to-cloud variations in SFRff. We find that SFRff in MCs can take any value in the range of 0 ≤ SFRff ≲ 0.2, and its probability distribution peaks at a value of SFRff ≈ 0.025, consistent with observations. The values of SFRff and the scatter in the SFRff-α vir relation are consistent with recent measurements in nearby MCs and in clouds near the Galactic center. Although not explicitly modeled by the theory, the scatter is consistent with the physical assumptions of our revised model and may also result in part from a lack of statistical equilibrium of the turbulence, due to the transient nature of MCs.

Overview of CERES Cloud Properties Derived From VIRS AND MODIS DATA

NASA Technical Reports Server (NTRS)

Minis, Patrick; Geier, Erika; Wielicki, Bruce A.; Sun-Mack, Sunny; Chen, Yan; Trepte, Qing Z.; Dong, Xiquan; Doelling, David R.; Ayers, J. Kirk; Khaiyer, Mandana M.

2006-01-01

Simultaneous measurement of radiation and cloud fields on a global basis is recognized as a key component in understanding and modeling the interaction between clouds and radiation at the top of the atmosphere, at the surface, and within the atmosphere. The NASA Clouds and Earth s Radiant Energy System (CERES) Project (Wielicki et al., 1998) began addressing this issue in 1998 with its first broadband shortwave and longwave scanner on the Tropical Rainfall Measuring Mission (TRMM). This was followed by the launch of two CERES scanners each on Terra and Aqua during late 1999 and early 2002, respectively. When combined, these satellites should provide the most comprehensive global characterization of clouds and radiation to date. Unfortunately, the TRMM scanner failed during late 1998. The Terra and Aqua scanners continue to operate, however, providing measurements at a minimum of 4 local times each day. CERES was designed to scan in tandem with high resolution imagers so that the cloud conditions could be evaluated for every CERES measurement. The cloud properties are essential for converting CERES radiances shortwave albedo and longwave fluxes needed to define the radiation budget (ERB). They are also needed to unravel the impact of clouds on the ERB. The 5-channel, 2-km Visible Infrared Scanner (VIRS) on the TRMM and the 36-channel 1-km Moderate Resolution Imaging Spectroradiometer (MODIS) on Terra and Aqua are analyzed to define the cloud properties for each CERES footprint. To minimize inter-satellite differences and aid the development of useful climate-scale measurements, it was necessary to ensure that each satellite imager is calibrated in a fashion consistent with its counterpart on the other CERES satellites (Minnis et al., 2006) and that the algorithms are as similar as possible for all of the imagers. Thus, a set of cloud detection and retrieval algorithms were developed that could be applied to all three imagers utilizing as few channels as possible while producing stable and accurate cloud properties. This paper discusses the algorithms and results of applying those techniques to more than 5 years of Terra MODIS, 3 years of Aqua MODIS, and 4 years of TRMM VIRS data.

The OGLE Collection of Variable Stars. Classical, Type II, and Anomalous Cepheids toward the Galactic Center

NASA Astrophysics Data System (ADS)

Soszyński, I.; Udalski, A.; Szymański, M. K.; Wyrzykowski, Ł.; Ulaczyk, K.; Poleski, R.; Pietrukowicz, P.; Kozłowski, S.; Skowron, D. M.; Skowron, J.; Mróz, P.; Pawlak, M.; Rybicki, K.; Jacyszyn-Dobrzeniecka, A.

2017-12-01

We present a collection of classical, typeII, and anomalous Cepheids detected in the OGLE fields toward the Galactic center. The sample contains 87 classical Cepheids pulsating in one, two or three radial modes, 924 type II Cepheids divided into BL Her, W Vir, peculiar W Vir, and RV Tau stars, and 20 anomalous Cepheids - first such objects found in the Galactic bulge. Additionally, we upgrade the OGLE Collection of RR Lyr stars in the Galactic bulge by adding 828 newly identified variables. For all Cepheids and RRLyr stars, we publish time-series VI photometry obtained during the OGLE-IV project, from 2010 through 2017. We discuss basic properties of our classical pulsators: their spatial distribution, light curve morphology, period-luminosity relations, and position in the Petersen diagram. We present the most interesting individual objects in our collection: a typeII Cepheid with additional eclipsing modulation, WVir stars with the period doubling effect and the RVb phenomenon, a mode-switching RR Lyr star, and a triple-mode anomalous RRd star.

Into the Modelling of RU Vir

NASA Astrophysics Data System (ADS)

Rau, G.; Hron, J.; Paladini, C.; Eriksson, K.; Aringer, B.; Groenewegen, M. A. T.; Mečina, M.

2015-08-01

We present an attempt to model the atmosphere of the carbon-rich Mira star RU Vir, using different techniques including spectroscopy, photometry, and interferometry. A radiative transfer code and hydrostatic model atmospheres were used for a preliminary study. To investigate the dynamic processes happening in RU Vir, dynamic model atmospheres were compared to new MIDI/VLTI observations obtained in April 2014, and SiC opacities were added.

Studying the Diurnal Cycle of Convection Using a TRMM-Calibrated Infrared Rain Algorithm

NASA Technical Reports Server (NTRS)

Negri, Andrew J.

2005-01-01

The development of a satellite infrared (IR) technique for estimating convective and stratiform rainfall and its application in studying the diurnal variability of rainfall on a global scale is presented. The Convective-Stratiform Technique (CST), calibrated by coincident, physically retrieved rain rates from the Tropical Rainfall Measuring Mission (TRMM) Precipitation Radar (PR), is applied over the global tropics. The technique makes use of the IR data from the TRMM Visible/Infrared Scanner (VIRS) before application to global geosynchronous satellite data. The calibrated CST technique has the advantages of high spatial resolution (4 km), filtering of nonraining cirrus clouds, and the stratification of the rainfall into its convective and stratiform components, the last being important for the calculation of vertical profiles of latent heating. The diurnal cycle of rainfall, as well as the division between convective and Stratiform rainfall will be presented. The technique is validated using available data sets and compared to other global rainfall products such as Global Precipitation Climatology Project (GPCP) IR product, calibrated with TRMM Microwave Imager (TMI) data. Results from five years of PR data will show the global-tropical partitioning of convective and stratiform rainfall.

Agrobacterium tumefaciens recognizes its host environment using ChvE to bind diverse plant sugars as virulence signals

PubMed Central

Hu, Xiaozhen; Zhao, Jinlei; DeGrado, William F.; Binns, Andrew N.

2013-01-01

Agrobacterium tumefaciens is a broad host range plant pathogen that combinatorially recognizes diverse host molecules including phenolics, low pH, and aldose monosaccharides to activate its pathogenic pathways. Chromosomal virulence gene E (chvE) encodes a periplasmic-binding protein that binds several neutral sugars and sugar acids, and subsequently interacts with the VirA/VirG regulatory system to stimulate virulence (vir) gene expression. Here, a combination of genetics, X-ray crystallography, and isothermal calorimetry reveals how ChvE binds the different monosaccharides and also shows that binding of sugar acids is pH dependent. Moreover, the potency of a sugar for vir gene expression is modulated by a transport system that also relies on ChvE. These two circuits tune the overall system to respond to sugar concentrations encountered in vivo. Finally, using chvE mutants with restricted sugar specificities, we show that there is host variation in regard to the types of sugars that are limiting for vir induction. PMID:23267119

Dawn at Vesta: An overview after the Dawn mission

NASA Astrophysics Data System (ADS)

Zambon, Francesca

2016-07-01

Vesta, the second largest object in the main asteroid belt of our Solar System, was explored by the Dawn mission for over a year [1, 2]. Dawn is equipped with the Framing Camera (FC) [3], which provides geological and compositional analysis, the Visible and InfraRed (VIR) mapping spectrometer [4], which allowed a comprehensive mineralogical mapping of the surface, and the Gamma Ray and Neutron Detector (GRaND) [5], which reveals the elemental composition. A wealth of data acquired by these three instruments allowed for improving the knowledge on the surface and near-surface properties of Vesta. Dawn covered a large fraction of Vesta' surface. Dawn's mission at Vesta has been divided into four different phases based on the spacecraft altitude [1], which resulted in a variety of pixel resolutions, reaching down to ~70 m/pixel for VIR and ~25 m/pixel for the FC. Pyroxene absorptions are the most prominent visible-to-near infrared spectral features of Vesta [6]. The overall mineralogy is consistent with howardite-eucrite-diogenite (HED) meteorites [7, 8]. More specifically, VIR spectra, acquired in the overall range 0.25-5.1 μm at spatial scales ranging from tens of meters to tens of kilometers, are consistent with a surface covered by a howardite-like regolith containing various proportions of eucrite and diogenite at different locations [9, 10]. Diogenite shows up in localized regions and mostly occurs in the southern polar region within the Rheasilvia impact basin [10]. Lithologies other than HEDs were indeed revealed by VIR spectra at the local scale. Olivine-rich deposits have been detected in Bellicia and Arruntia craters as well as in a limited number of other sites [11, 12, 13], while a large number of bright [14] and dark units [15, 16, 17] overlay Vesta'surface. Spectrally distinct, eucrite-rich ejecta have been observed in the Oppia and Octavia ejecta, interpreted to be glassy impact melt [18, 19]. VIR spectral analysis highlights a shallow 2.8-μm band diagnostic of OH-bearing phases [20]. This feature is mostly associated with dark material, which is believed to be exogenous material delivered by carbonaceous asteroids over time [16]. However, OH-rich material has been found to correlate with moderate-reflectance such as small spectrally distinct patches in the Oppia region [18], and a large circular area including Bellicia and Arruntia craters [21]. Compared to dark units, bright material units have a much weaker 2.8-μm band [14]. These units are interpreted to have an endogenous origin, therefore representing the relatively uncontaminated indigenous Vesta basaltic soil [16]. [1] Russell, C.T., Raymond, C.A., Space Sci. Rev. 163, 3-23, 2011. [2] Russell, C.T. et al., Science, 336, 684, 2012. [3] Sierks, H. et al., Space Sci. Rev. 163, 263-327, 2011. [4] De Sanctis et al., Space Sci. Rev. 163, 329-369, 2011. [5] Prettyman, T.H. et al., Space Sci. Rev. 163, 371-459, 2011. [6] McCord, Science 168, 1445-1447, 1970. [7] Drake, University of Arizona Press, 1979. [8] Feierberg and Drake, Science 209, 805-807, 1980. [9] De Sanctis et al., Science 336, 697-700, 2012. [10] Ammannito, E. et al., Maps 48, 2185-2198, 2013. [11] Ammannito, E. et al., Nature 504, 112-125, 2013. [12] Ruesch, O. et al, JGR 119-9, 2078-2108, 2014. [13] Palomba et al., Icarus 258, p. 120-134, 2015. [14] Zambon et al., Icarus 240, p. 73-85, 2014. [15] Jaumann et al., Science, 336 (6082), 687, 2012. [16] McCord et al., Nature 491, 83-86, 2012. [17] Palomba et al., Icarus 240, 58-72, 2014. [18] Le Corre, et al., Icarus, 226-2, 1568-1594, 2013. [19] Tosi et al., Icarus 259, 129-149, 2015. [20] De Sanctis et al., Astrophys. J. Lett. 758, L36, 2012. [21] Combe et al., Icarus 259, 53-71, 2015

Updates in the IR responsivity of VIR, the spectrometer of the Dawn mission.

NASA Astrophysics Data System (ADS)

Ammannito, Eleonora; Mc Cord, Thomas B.; De Sanctis, Maria Cristina.; Combe, Jean-Philippe

VIR-MS (Visual and Infrared Mapping Spectrometer) is the imaging spectrometer of the Dawn mission (1,2). Here, first we describe the computation of a new instrument responsivity based on the internal calibration data acquired during the operations at Vesta, and then we describe its effect on the dataset and on the results published so far. VIR-MS was built in Italy by a scientific-industrial (IAPS/INAF in Rome (Italy) and Selex ES in Campi Bisenzio (Fi, Italy)) consortium financially supported by the Italian Space Agency. VIR-MS is an high spatial resolution spectrometer (FOV of 64mrad, IFOV of 250 µrad) in the 0.25-5 µm range with an IFOV of 250 µrad and a spectral sampling of about 2 nm in the visible range and 10 nm in the IR range. The results of the on-ground calibration held in the Selex calibration facility in September 2005 were already presented and discussed in a paper (2). This version has been used to calibrate the data available on the Planetary Data System (PDS) Small Bodies Node, dataset used in all the papers published so far. However, after the operations at the asteroid Vesta, we have identified some artifacts in the instrument responsivity in the 2.5-3.5 µm region, which is where several absorption bands of OH and H2O occur. Those artifacts were systematic, and therefore they did not prevent the detection of relative spectral variations associated to OH and H2O. Actually, the only paper published in which are discussed spectra in this range (3) used a different calibration method described in the paper itself. This method used a simple correction of the response function based on an empirical calibration correction that is appropriate to recover the signal in that specific range. However, the absolute absorption band depth of OH and H2O could not be calculated. To compute a new instrument responsivity we used the internal lamp of the spectrometer. This lamp, made of a tungsten filament, is characterized by a blackbody-like emission at about 2400K (4). Since the spectrum of the infrared radiation emitted by the tungsten filaments is featureless, a polystyrene filter was inserted for a wavelength calibration of the IR channel. The idea was to use the black body radiation of this lamp to retrieve a relative Instrument Responsivity in the 2.5-3.5 µm region. First we calibrated the signal from internal calibration lamp with the on-ground responsivity, and then we retrieved the equivalent temperature of the radiation fitting a Planck curve. The next step was to compute the Planck function at the equivalent temperature. The new Instrument Responsivity is the result of the ratio between the raw signal of the lamp and the Planck function. This ratio must be multiplied by a factor to take into account the integration time used to acquire the signal, the transmittance of the polystyrene filter, and the viewing geometry. The new instrument responsivity function minimizes most calibration residuals that was showing as artifact peaks between 2.5 and 2.9 µm in the previous calibration. It now allows the use of VIR spectra to identify absorption bands of OH and H2O, without requiring additional empirical corrections. As calibration is always an on-going process, we are looking forward to enable the interpretation of absolute absorption band depths, which is a required step for the calculation of surface material abundances. References: (1) C.T. Russell & C.A. Raymond, Space Sci. Rev., 163, 3 2011 (2) M.C. De Sanctis, A. Coradini, E. Ammannito, E., et al. Space Sci. Rev.,163, 329, 2011 (3) M.C. DeSanctis, J-Ph. Combe et al APJL 758:L36, 2013 (4)R. Melchiorri, G. Piccioni, A. Mazzoni, Rev. Sci. Instrum. 74(8), 3796-3801 2003

Efficient and rapid Agrobacterium-mediated genetic transformation of durum wheat (Triticum turgidum L. var. durum) using additional virulence genes.

PubMed

Wu, Huixia; Doherty, Angela; Jones, Huw D

2008-06-01

Genetic transformation of wheat, using biolistics or Agrobacterium, underpins a range of specific research methods for identifying genes and studying their function in planta. Transgenic approaches to study and modify traits in durum wheat have lagged behind those for bread wheat. Here we report the use of Agrobacterium strain AGL1, with additional vir genes housed in a helper plasmid, to transform and regenerate the durum wheat variety Ofanto. The use of the basic pSoup helper plasmid with no additional vir genes failed to generate transformants, whereas the presence of either virG542 or the 15 kb Komari fragment containing virB, virC and virG542 produced transformation efficiencies of between 0.6 and 9.7%. Of the 42 transgenic plants made, all but one (which set very few seeds) appeared morphologically normal and produced between 100 and 300 viable seeds. The transgene copy number and the segregation ratios were found to be very similar to those previously reported for bread wheat. We believe that this is the first report describing successful genetic transformation of tetraploid durum wheat (Triticum turgidum L. var. durum) mediated by Agrobacterium tumefaciens using immature embryos as the explant.

Clinical study in genital herpes: natural Gene-Eden-VIR/Novirin versus acyclovir, valacyclovir, and famciclovir.

PubMed

Polansky, Hanan; Javaherian, Adrian; Itzkovitz, Edan

2016-01-01

This paper reports the results of a clinical study that tested the effect of suppressive treatment with the botanical product Gene-Eden-VIR/Novirin on the number of genital herpes outbreaks. The results in this study were compared to those published in clinical studies of acyclovir, valacyclovir, and famciclovir. The framework was a retrospective chart review. The population included 139 participants. The treatment was one to four capsules of Gene-Eden-VIR/Novirin per day. The duration of treatment was 2-48 months. The study included three controls recommended by the US Food and Drug Administration (FDA): baseline, no treatment, and dose response. The treatment decreased the number of outbreaks per year in 90.8% of the participants. The treatment also decreased the mean number of outbreaks per year from 7.27 and 5.5 in the control groups to 2.39 (P<0.0001 and P<0.001, respectively). The treated participants reported no adverse experiences. Out of the 15 tests that compared Gene-Eden-VIR/Novirin to the three drugs, Gene-Eden-VIR/Novirin had superior efficacy in eight tests, inferior efficacy in three tests, and comparable efficacy in four tests. Gene-Eden-VIR/Novirin also had superior safety. The clinical study showed that the natural Gene-Eden-VIR/Novirin decreases the number of genital herpes outbreaks without any side effects. The study also showed that the clinical effects reported in this study are mostly better than those reported in the reviewed studies of acyclovir, valacyclovir, and famciclovir.

Reanalysis of the orbital period variations of two DLMR overcontact binaries: FG Hya and GR Vir

NASA Astrophysics Data System (ADS)

Zhang, Xu-Dong; Yu, Yun-Xia; Xiang, Fu-Yuan; Hu, Ke

2017-12-01

We investigate orbital period changes of two deep, low mass ratio (DLMR) overcontact W UMa-type binaries, FG Hya and GR Vir. It is found that the orbital period of FG Hya shows a cyclic change with a period of {P}{mod}=54.44 {yr}. The cyclic oscillation may be due to a third body in an eccentric orbit, while the orbital period of GR Vir shows a periodic variation with a period of {P}{mod}=28.56 {yr} and an amplitude of A = 0.0352 d. The periodic variation of GR Vir can be interpreted as a result of either the light-time effect of an unseen third body or the magnetic activity cycle.

Candida albicans Germ-Tube Antibody: Evaluation of a New Automatic Assay for Diagnosing Invasive Candidiasis in ICU Patients.

PubMed

Parra-Sánchez, Manuel; Zakariya-Yousef Breval, Ismail; Castro Méndez, Carmen; García-Rey, Silvia; Loza Vazquez, Ana; Úbeda Iglesias, Alejandro; Macías Guerrero, Desiree; Romero Mejías, Ana; León Gil, Cristobal; Martín-Mazuelos, Estrella

2017-08-01

Testing for Candida albicans germ-tube antibody IFA IgG assay (CAGTA) is used to detect invasive candidiasis infection. However, most suitable assays lack automation and rapid single-sample testing. The CAGTA assay was adapted in an automatic monotest system (invasive candidiasis [CAGTA] VirClia ® IgG monotest (VirClia ® ), a chemiluminescence assay with ready-to-use reagents that provides a rapid objective result. CAGTA assay was compared with the monotest automatic VirClia ® assay in order to establish the diagnostic reliability, accuracy, and usefulness of this method. A prospective study with 361 samples from 179 non-neutropenic critically ill adults patients was conducted, including 21 patients with candidemia, 18 with intra-abdominal candidiasis, 84 with Candida spp. colonization, and 56 with culture-negative samples, as well as samples from ten healthy subjects. Overall agreement between the two assays (CAGTA and VirCLIA) was 85.3%. These assays were compared with the gold-standard method to determine the sensitivity, specificity as well as positive and negative predictive values. In patients with candidemia, values for CAGTA and VirCLIA assays were 76.2 versus 85.7%, 80.3 versus 75.8%, 55.2 versus 52.9%, and 91.4 versus 94.3%, respectively. The corresponding values in patients with intra-abdominal candidiasis were 61.1 versus 66.7%, 80.3 versus 75.8%, 45.8 versus 42.9%, and 88.3 versus 89.3%, respectively. No differences were found according to the species of Candida isolated in culture, except for Candida albicans and C. parapsilosis, for which VirClia ® was better than CAGTA. According to these results, the automated VirClia ® assay was a reliable, rapid, and very easy to perform technique as tool for the diagnosis invasive candidiasis.

DOE Office of Scientific and Technical Information (OSTI.GOV)

Chae, Kyu-Hyun; Kravtsov, Andrey V.; Frieman, Joshua A.

With SDSS galaxy data and halo data from up-to-date N-body simulations we construct a semi-empirical catalog (SEC) of early-type systems by making a self-consistent bivariate statistical match of stellar mass (M_star) and velocity dispersion (sigma) with halo virial mass (M_vir). We then assign stellar mass profile and velocity dispersion profile parameters to each system in the SEC using their observed correlations with M_star and sigma. Simultaneously, we solve for dark matter density profile of each halo using the spherical Jeans equation. The resulting dark matter density profiles deviate in general from the dissipationless profile of NFW or Einasto and theirmore » mean inner density slope and concentration vary systematically with M_vir. Statistical tests of the distribution of profiles at fixed M_vir rule out the null hypothesis that it follows the distribution predicted by N-body simulations for M_vir ~< 10^{13.5-14.5} M_solar. These dark matter profiles imply that dark matter density is, on average, enhanced significantly in the inner region of halos with M_vir ~< 10^{13.5-14.5} M_solar supporting halo contraction. The main characteristics of halo contraction are: (1) the mean dark matter density within the effective radius has increased by a factor varying systematically up to ~ 3-4 at M_vir = 10^{12} M_solar, and (2) the inner density slope has a mean of ~ 1.3 with rho(r) ~ r^{-alpha} and a halo-to-halo rms scatter of rms(alpha) ~ 0.4-0.5 for 10^{12} M_solar ~< M_vir ~< 10^{13-14} M_solar steeper than the NFW profile (alpha=1). Based on our results we predict that halos of nearby elliptical and lenticular galaxies can, in principle, be promising targets for gamma-ray emission from dark matter annihilation.« less

Roles of the Putative Type IV-like Secretion System Key Component VirD4 and PrsA in Pathogenesis of Streptococcus suis Type 2

PubMed Central

Jiang, Xiaowu; Yang, Yunkai; Zhou, Jingjing; Zhu, Lexin; Gu, Yuanxing; Zhang, Xiaoyan; Li, Xiaoliang; Fang, Weihuan

2016-01-01

Streptococcus suis type 2 (SS2) is a zoonotic pathogen causing septic infection, meningitis and pneumonia in pigs and humans. SS2 may cause streptococcal toxic shock syndrome (STSS) probably due to excessive release of inflammatory cytokines. A previous study indicated that the virD4 gene in the putative type IV-like secretion system (T4SS) within the 89K pathogenicity island specific for recent epidemic strains contributed to the development of STSS. However, the functional basis of VirD4 in STSS remains unclear. Here we show that deletion of virD4 led to reduced virulence as shown by about 65% higher LD50, lower bacterial load in liver and brain, and lower level of expression of inflammatory cytokines in mice and cell lines than its parent strain. The ΔVirD4 mutant was more easily phagocytosed, suggesting its role as an anti-phagocytic factor. Oxidative stress that mimic bacterial exposure to respiratory burst of phagocytes upregulated expression of virD4. Proteomic analysis identified 10 secreted proteins of significant differences between the parent and mutant strains under oxidative stress, including PrsA, a peptidyl-prolyl isomerase. The SS2 PrsA expressed in E. coli caused a dose-dependent cell death and increased expression of proinflammatory IL-1β, IL-6 and TNF-α in murine macrophage cells. Our data provide novel insights into the contribution of the VirD4 factor to STSS pathogenesis, possibly via its anti-phagocytic activity, upregulation of its expression upon oxidative stress and its involvement in increased secretion of PrsA as a cell death inducer and proinflammatory effector. PMID:27995095

Detecting exact breakpoints of deletions with diversity in hepatitis B viral genomic DNA from next-generation sequencing data.

PubMed

Cheng, Ji-Hong; Liu, Wen-Chun; Chang, Ting-Tsung; Hsieh, Sun-Yuan; Tseng, Vincent S

2017-10-01

Many studies have suggested that deletions of Hepatitis B Viral (HBV) are associated with the development of progressive liver diseases, even ultimately resulting in hepatocellular carcinoma (HCC). Among the methods for detecting deletions from next-generation sequencing (NGS) data, few methods considered the characteristics of virus, such as high evolution rates and high divergence among the different HBV genomes. Sequencing high divergence HBV genome sequences using the NGS technology outputs millions of reads. Thus, detecting exact breakpoints of deletions from these big and complex data incurs very high computational cost. We proposed a novel analytical method named VirDelect (Virus Deletion Detect), which uses split read alignment base to detect exact breakpoint and diversity variable to consider high divergence in single-end reads data, such that the computational cost can be reduced without losing accuracy. We use four simulated reads datasets and two real pair-end reads datasets of HBV genome sequence to verify VirDelect accuracy by score functions. The experimental results show that VirDelect outperforms the state-of-the-art method Pindel in terms of accuracy score for all simulated datasets and VirDelect had only two base errors even in real datasets. VirDelect is also shown to deliver high accuracy in analyzing the single-end read data as well as pair-end data. VirDelect can serve as an effective and efficient bioinformatics tool for physiologists with high accuracy and efficient performance and applicable to further analysis with characteristics similar to HBV on genome length and high divergence. The software program of VirDelect can be downloaded at https://sourceforge.net/projects/virdelect/. Copyright © 2017. Published by Elsevier Inc.

Type VI secretion is a major virulence determinant in Burkholderia mallei.

PubMed

Schell, Mark A; Ulrich, Ricky L; Ribot, Wilson J; Brueggemann, Ernst E; Hines, Harry B; Chen, Dan; Lipscomb, Lyla; Kim, H Stanley; Mrázek, Jan; Nierman, William C; Deshazer, David

2007-06-01

Burkholderia mallei is a host-adapted pathogen and a category B biothreat agent. Although the B. mallei VirAG two-component regulatory system is required for virulence in hamsters, the virulence genes it regulates are unknown. Here we show with expression profiling that overexpression of virAG resulted in transcriptional activation of approximately 60 genes, including some involved in capsule production, actin-based intracellular motility, and type VI secretion (T6S). The 15 genes encoding the major sugar component of the homopolymeric capsule were up-expressed > 2.5-fold, but capsule was still produced in the absence of virAG. Actin tail formation required virAG as well as bimB, bimC and bimE, three previously uncharacterized genes that were activated four- to 15-fold when VirAG was overproduced. Surprisingly, actin polymerization was found to be dispensable for virulence in hamsters. In contrast, genes encoding a T6S system were up-expressed as much as 30-fold and mutations in this T6S gene cluster resulted in strains that were avirulent in hamsters. SDS-PAGE and mass spectrometry demonstrated that BMAA0742 was secreted by the T6S system when virAG was overexpressed. Purified His-tagged BMAA0742 was recognized by glanders antiserum from a horse, a human and mice, indicating that this Hcp-family protein is produced in vivo during infection.

Hardware-in-the-Loop Co-simulation of Distribution Grid for Demand Response

DOE Office of Scientific and Technical Information (OSTI.GOV)

Rotger-Griful, Sergi; Chatzivasileiadis, Spyros; Jacobsen, Rune H.

2016-06-20

In modern power systems, co-simulation is proposed as an enabler for analyzing the interactions between disparate systems. This paper introduces the co-simulation platform Virtual Grid Integration Laboratory (VirGIL) including Hardware-in-the-Loop testing, and demonstrates its potential to assess demand response strategies. VirGIL is based on a modular architecture using the Functional Mock-up Interface industrial standard to integrate new simulators. VirGIL combines state-of-the-art simulators in power systems, communications, buildings, and control. In this work, VirGIL is extended with a Hardware-in-the-Loop component to control the ventilation system of a real 12-story building in Denmark. VirGIL capabilities are illustrated in three scenarios: load following,more » primary reserves and load following aggregation. Experimental results show that the system can track one minute changing signals and it can provide primary reserves for up-regulation. Furthermore, the potential of aggregating several ventilation systems is evaluated considering the impact at distribution grid level and the communications protocol effect.« less

Long-term orbital period behaviour of low mass ratio contact binaries GR Vir and FP Boo

NASA Astrophysics Data System (ADS)

Ćetinkaya, Halil; Soydugan, Faruk

2017-02-01

In this study, we investigated orbital period variations of two low mass ratio contact binaries GR Vir and FP Boo based on published minima times. From the O-C analysis, it was found that FP Boo indicates orbital period decrease while the period of GR Vir is increasing. Mass transfer process was used to explain increase and decrease in the orbital periods. In the O-C diagrams of both systems periodic variations also exist. Cyclic changes can be explained as being the result of a light-travel time effect via a third component around the eclipsing binaries. In order to interpret of cyclic orbital period changes for GR Vir, which has late-type components, possible magnetic activity cycles of the components have been also considered.

VirSorter: mining viral signal from microbial genomic data.

PubMed

Roux, Simon; Enault, Francois; Hurwitz, Bonnie L; Sullivan, Matthew B

2015-01-01

Viruses of microbes impact all ecosystems where microbes drive key energy and substrate transformations including the oceans, humans and industrial fermenters. However, despite this recognized importance, our understanding of viral diversity and impacts remains limited by too few model systems and reference genomes. One way to fill these gaps in our knowledge of viral diversity is through the detection of viral signal in microbial genomic data. While multiple approaches have been developed and applied for the detection of prophages (viral genomes integrated in a microbial genome), new types of microbial genomic data are emerging that are more fragmented and larger scale, such as Single-cell Amplified Genomes (SAGs) of uncultivated organisms or genomic fragments assembled from metagenomic sequencing. Here, we present VirSorter, a tool designed to detect viral signal in these different types of microbial sequence data in both a reference-dependent and reference-independent manner, leveraging probabilistic models and extensive virome data to maximize detection of novel viruses. Performance testing shows that VirSorter's prophage prediction capability compares to that of available prophage predictors for complete genomes, but is superior in predicting viral sequences outside of a host genome (i.e., from extrachromosomal prophages, lytic infections, or partially assembled prophages). Furthermore, VirSorter outperforms existing tools for fragmented genomic and metagenomic datasets, and can identify viral signal in assembled sequence (contigs) as short as 3kb, while providing near-perfect identification (>95% Recall and 100% Precision) on contigs of at least 10kb. Because VirSorter scales to large datasets, it can also be used in "reverse" to more confidently identify viral sequence in viral metagenomes by sorting away cellular DNA whether derived from gene transfer agents, generalized transduction or contamination. Finally, VirSorter is made available through the iPlant Cyberinfrastructure that provides a web-based user interface interconnected with the required computing resources. VirSorter thus complements existing prophage prediction softwares to better leverage fragmented, SAG and metagenomic datasets in a way that will scale to modern sequencing. Given these features, VirSorter should enable the discovery of new viruses in microbial datasets, and further our understanding of uncultivated viral communities across diverse ecosystems.

VirSorter: mining viral signal from microbial genomic data

PubMed Central

Roux, Simon; Enault, Francois; Hurwitz, Bonnie L.

2015-01-01

Viruses of microbes impact all ecosystems where microbes drive key energy and substrate transformations including the oceans, humans and industrial fermenters. However, despite this recognized importance, our understanding of viral diversity and impacts remains limited by too few model systems and reference genomes. One way to fill these gaps in our knowledge of viral diversity is through the detection of viral signal in microbial genomic data. While multiple approaches have been developed and applied for the detection of prophages (viral genomes integrated in a microbial genome), new types of microbial genomic data are emerging that are more fragmented and larger scale, such as Single-cell Amplified Genomes (SAGs) of uncultivated organisms or genomic fragments assembled from metagenomic sequencing. Here, we present VirSorter, a tool designed to detect viral signal in these different types of microbial sequence data in both a reference-dependent and reference-independent manner, leveraging probabilistic models and extensive virome data to maximize detection of novel viruses. Performance testing shows that VirSorter’s prophage prediction capability compares to that of available prophage predictors for complete genomes, but is superior in predicting viral sequences outside of a host genome (i.e., from extrachromosomal prophages, lytic infections, or partially assembled prophages). Furthermore, VirSorter outperforms existing tools for fragmented genomic and metagenomic datasets, and can identify viral signal in assembled sequence (contigs) as short as 3kb, while providing near-perfect identification (>95% Recall and 100% Precision) on contigs of at least 10kb. Because VirSorter scales to large datasets, it can also be used in “reverse” to more confidently identify viral sequence in viral metagenomes by sorting away cellular DNA whether derived from gene transfer agents, generalized transduction or contamination. Finally, VirSorter is made available through the iPlant Cyberinfrastructure that provides a web-based user interface interconnected with the required computing resources. VirSorter thus complements existing prophage prediction softwares to better leverage fragmented, SAG and metagenomic datasets in a way that will scale to modern sequencing. Given these features, VirSorter should enable the discovery of new viruses in microbial datasets, and further our understanding of uncultivated viral communities across diverse ecosystems. PMID:26038737

The Circumgalactic Medium of Andromeda

NASA Astrophysics Data System (ADS)

Lehner, Nicolas; Project AMIGA Team

2017-03-01

Our view of galaxies has been transformed in recent years with diffuse halo gas surrounding galaxies that contains at least as many metals and baryons as their disks. While single sight lines through galaxy halos seen in absorption have provided key new constraints, they provide only average properties. Our massive neighbor, the Andromeda (M31) galaxy, provides an unique way to study its circumgalactic medium whereby we can study it using not one or two, but ~36 sightlines thanks to its proximity. With our Large HST program - Project AMIGA (Absorption Maps In the Gas of Andromeda), our goals are to determine the spatial distribution of the halo properties of a L* galaxy using 36 background targets at different radii and azimuths. In this brief paper, I discuss briefly the scientific rationale of Project AMIGA and some early science results. In particular, for the first time we have demonstrated that M31 has a gaseous halo that extends to R vir with as much as metal and baryonic masses than in its disk and has substantial change in its ionization properties with more highly ionized gas found at R ~ R vir than cooler gas found near the disk.

Physical Orbit for λ Virginis and a Test of Stellar Evolution Models

NASA Astrophysics Data System (ADS)

Zhao, M.; Monnier, J. D.; Torres, G.; Boden, A. F.; Claret, A.; Millan-Gabet, R.; Pedretti, E.; Berger, J.-P.; Traub, W. A.; Schloerb, F. P.; Carleton, N. P.; Kern, P.; Lacasse, M. G.; Malbet, F.; Perraut, K.

2007-04-01

The star λ Virginis is a well-known double-lined spectroscopic Am binary with the interesting property that both stars are very similar in abundance but one is sharp-lined and the other is broad-lined. We present combined interferometric and spectroscopic studies of λ Vir. The small scale of the λ Vir orbit (~20 mas) is well resolved by the Infrared Optical Telescope Array (IOTA), allowing us to determine its elements, as well as the physical properties of the components, to high accuracy. The masses of the two stars are determined to be 1.897 and 1.721 Msolar, with 0.7% and 1.5% errors, respectively, and the two stars are found to have the same temperature of 8280+/-200 K. The accurately determined properties of λ Vir allow comparisons between observations and current stellar evolution models, and reasonable matches are found. The best-fit stellar model gives λ Vir a subsolar metallicity of Z=0.0097 and an age of 935 Myr. The orbital and physical parameters of λ Vir also allow us to study its tidal evolution timescales and status. Although atomic diffusion is currently considered to be the most plausible cause of the Am phenomenon, the issue is still being actively debated in the literature. With the present study of the properties and evolutionary status of λ Vir, this system is an ideal candidate for further detailed abundance analyses that might shed more light on the source of the chemical anomalies in these A stars.

Type IV secretion system of Brucella spp. and its effectors

PubMed Central

Ke, Yuehua; Wang, Yufei; Li, Wengfeng; Chen, Zeliang

2015-01-01

Brucella spp. are intracellular bacterial pathogens that cause infection in domestic and wild animals. They are often used as model organisms to study intracellular bacterial infections. Brucella VirB T4SS is a key virulence factor that plays important roles in mediating intracellular survival and manipulating host immune response to infection. In this review, we discuss the roles of Brucella VirB T4SS and 15 effectors that are proposed to be crucial for Brucella pathogenesis. VirB T4SS regulates the inflammation response and manipulates vesicle trafficking inside host cells. VirB T4SS also plays crucial roles in the inhibition of the host immune response and intracellular survival during infection. Here, we list the key molecular events in the intracellular life cycle of Brucella that are potentially targeted by the VirB T4SS effectors. Elucidating the functions of these effectors will help clarify the molecular role of T4SS during infection. Furthermore, studying the effectors secreted by Brucella spp. might provide insights into the mechanisms used by the bacteria to hijack the host signaling pathways and aid in the development of better vaccines and therapies against brucellosis. PMID:26528442

Type IV secretion system of Brucella spp. and its effectors.

PubMed

Ke, Yuehua; Wang, Yufei; Li, Wengfeng; Chen, Zeliang

2015-01-01

Brucella spp. are intracellular bacterial pathogens that cause infection in domestic and wild animals. They are often used as model organisms to study intracellular bacterial infections. Brucella VirB T4SS is a key virulence factor that plays important roles in mediating intracellular survival and manipulating host immune response to infection. In this review, we discuss the roles of Brucella VirB T4SS and 15 effectors that are proposed to be crucial for Brucella pathogenesis. VirB T4SS regulates the inflammation response and manipulates vesicle trafficking inside host cells. VirB T4SS also plays crucial roles in the inhibition of the host immune response and intracellular survival during infection. Here, we list the key molecular events in the intracellular life cycle of Brucella that are potentially targeted by the VirB T4SS effectors. Elucidating the functions of these effectors will help clarify the molecular role of T4SS during infection. Furthermore, studying the effectors secreted by Brucella spp. might provide insights into the mechanisms used by the bacteria to hijack the host signaling pathways and aid in the development of better vaccines and therapies against brucellosis.

On Orbit Measurement of Response vs. Scan Angle for the Infrared Bands on TRMM/VIRS

NASA Technical Reports Server (NTRS)

Barnes, William L.; Lyu, Cheng-Hsuan; Barnes, Robert A.

1999-01-01

The Visible and Infrared Scanner on the Tropical Rainfall Measuring Mission (TRMM/VIRS) is a whiskbroom imaging radiometer with two reflected solar bands and three emissive infrared bands. All five detectors are on a single cooled focal plane. This configuration necessitated the use of a paddlewheel scan mirror to avoid the effects of focal plane rotation that arise when using a scan mirror that is inclined to its axis of rotation. System radiometric requirements led to the need for protected silver as the mirror surface. Unfortunately, the SiO(x) coatings currently used to protect silver from oxidation introduce a change in reflectance with angle of incidence (AOI). This AOI dependence results in a modulation of system level response with scan angle. Measurement of system response vs. scan angle (RVS) was not difficult for the VIRS reflected solar bands, but attaining the required accuracy for the IR bands in the laboratory was not possible without a large vacuum chamber and a considerable amount of custom designed testing apparatus. Therefore, the decision was made to conduct the measurement on-orbit. On three separate occasions, the TRMM spacecraft was rotated about its pitch axis and, after the nadir view passed over the Earth's limb, the VIRS performed several thousand scans while viewing deep space. The resulting data has been analyzed and the RVS curves generated for the three IR bands are being used in the VIRS radiometric calibration algorithm. This, to our knowledge, the first time this measurement has been made on-orbit. Similar measurements are planned for the EOS-AM and EOS-PM MODIS sensors and are being considered for several systems under development. The VIRS on-orbit results will be compared to VIRS and MODIS system level laboratory measurements, MODIS scan mirror witness sample measurements and modeled data.

SU-D-209-03: Radiation Dose Reduction Using Real-Time Image Processing in Interventional Radiology

DOE Office of Scientific and Technical Information (OSTI.GOV)

Kanal, K; Moirano, J; Zamora, D

Purpose: To characterize changes in radiation dose after introducing a new real-time image processing technology in interventional radiology systems. Methods: Interventional radiology (IR) procedures are increasingly complex, at times requiring substantial time and radiation dose. The risk of inducing tissue reactions as well as long-term stochastic effects such as radiation-induced cancer is not trivial. To reduce this risk, IR systems are increasingly equipped with dose reduction technologies.Recently, ClarityIQ (Philips Healthcare) technology was installed in our existing neuroradiology IR (NIR) and vascular IR (VIR) suites respectively. ClarityIQ includes real-time image processing that reduces noise/artifacts, enhances images, and sharpens edges while alsomore » reducing radiation dose rates. We reviewed 412 NIR (175 pre- and 237 post-ClarityIQ) procedures and 329 VIR (156 preand 173 post-ClarityIQ) procedures performed at our institution pre- and post-ClarityIQ implementation. NIR procedures were primarily classified as interventional or diagnostic. VIR procedures included drain port, drain placement, tube change, mesenteric, and implanted venous procedures. Air Kerma (AK in units of mGy) was documented for all the cases using a commercial radiation exposure management system. Results: When considering all NIR procedures, median AK decreased from 1194 mGy to 561 mGy. When considering all VIR procedures, median AK decreased from 49 to 14 mGy. Both NIR and VIR exhibited a decrease in AK exceeding 50% after ClarityIQ implementation, a statistically significant (p<0.05) difference. Of the 5 most common VIR procedures, all median AK values decreased, but significance (p<0.05) was only reached in venous access (N=53), angio mesenteric (N=41), and drain placement procedures (N=31). Conclusion: ClarityIQ can reduce dose significantly for both NIR and VIR procedures. Image quality was not assessed in conjunction with the dose reduction.« less

Metabolic dependent and independent pH-drop shuts down VirSR quorum sensing in Clostridium perfringens.

PubMed

Adachi, Keika; Ohtani, Kaori; Kawano, Michio; Singh, Ravindra Pal; Yousuf, Basit; Sonomoto, Kenji; Shimizu, Tohru; Nakayama, Jiro

2018-05-01

Clostridium perfringens produces various exotoxins and enzymes that cause food poisoning and gas gangrene. The genes involved in virulence are regulated by the agr-like quorum sensing (QS) system, which consists of a QS signal synthesis system and a VirSR two-component regulatory system (VirSR TCS) which is a global regulatory system composed of signal sensor kinase (VirS) and response regulator (VirR). We found that the perfringolysin O gene (pfoA) was transiently expressed during mid-log phase of bacterial growth; its expression was rapidly shut down thereafter, suggesting the existence of a self-quorum quenching (sQQ) system. The sQQ system was induced by the addition of stationary phase culture supernatant (SPCS). Activity of the sQQ system was heat stable, and was present following filtration through the ultrafiltration membrane, suggesting that small molecules acted as sQQ agents. In addition, sQQ was also induced by pure acetic and butyric acids at concentrations equivalent to those in the stationary phase culture, suggesting that organic acids produced by C. perfringens were involved in sQQ. In pH-controlled batch culture, sQQ was greatly diminished; expression level of pfoA extended to late-log growth phase, and was eventually increased by one order of magnitude. Furthermore, hydrochloric acid induced sQQ at the same pH as was used in organic acids. SPCS also suppressed the expression of genes regulated by VirSR TCS. Overall, the expression of virulence factors of C. perfringens was downregulated by the sQQ system, which was mediated by primary acidic metabolites and acidic environments. This suggested the possibility of pH-controlled anti-virulence strategies. Copyright © 2018 The Society for Biotechnology, Japan. Published by Elsevier B.V. All rights reserved.

Validation of the Archived CERES Surface and Atmosphere Radiation Budget (SARB) at SGP

NASA Technical Reports Server (NTRS)

Charlock, Thomas P.; Rose, Fred G.; Rutan, David A.

2003-01-01

The CERES Surface and Atmosphere Radiation Budget (SARB) product (Charlock et al, 2002) includes the vertical profile of broadband SW, broadband LW, and 8-12 micron window (WN) fluxes; upwelling and downwelling at TOA, 70 hPa, 200 hPa, 500 hPa, and the surface; and for all-sky and clear-sky conditions. We test the archived CERES TRMM record of SARB for January-August 1998 and focus on discrepancies with ground-based measurements at SGP. The CERES SARB is generated by a highly modified Fu-Liou radiative transfer code (Fu and Liou, 1993). The most critical inputs for this application are cloud optical properties (fractional area, optical depth, particle size and phase, height of top, and estimate of geometrical thickness Minnis et al., 2002) from the narrowband VIRS imager. Numerous VIRS pixels (approx. 2km resolution at nadir) are matched to each of the large (approx. 20km) CERES broadband footprints (Wielicki et al, 1996). Other inputs include temperature and humidity from ECMWF (Rabier et al, 1998) , NCEP ozone profiles from SBUV and TOVS (Yang et al, 2001), aerosol optical thickness (AOT) from the Model for Atmospheric Transport and Chemistry (MATCH) aerosol assimilation (Collins et al., 2001) or alternately from the VIRS imager (Ignatov and Stowe, 2000). VIRS AOT is available for clear and partly cloudy ocean footprints during daylight; and only when viewing geometry renders a contribution from sunglint as unlikely. For other footprints, AOT is taken from MATCH. AOT is apportioned into fractions of dust (Tegan and Lacis, 1996), sea salt, sulfate, dust, soluble organic, insoluble organic, and soot (Hess et al., 1996) using the 6-hourly MATCH output. Tuned fluxes are retrieved by adjusting inputs to nudge computed TOA fluxes toward CERES observations (Rose et al, 1997). In clear conditions, the fields of humidity, surface skin temperature, surface albedo and AOT are adjusted to produce a closer match of computed and observed fluxes at TOA. When CERES footprints have clouds, the cloud optical thickness, fractional area within the footprint, and temperature of cloud top are adjusted by the tuning algorithm. Both tuned and untuned fluxes are archived, as are the respective adjustments to any parameters at the surface or within the atmosphere.

Continuum definition for Ceres absorption bands at 3.1, 3.4 and 4.0 μm

NASA Astrophysics Data System (ADS)

Galiano, A.; Palomba, E.; Longobardo, A.; Zinzi, A.; De Sanctis, M. C.; Raponi, A.; Carrozzo, F. G.; Ciarniello, M.; Dirri, F.

2017-09-01

The images and hyperspectral data acquired during various Dawn mission phases (e.g. Survey, HAMO and LAMO) allowed identifying regions of different albedo on Ceres surface, where absorption bands located at 3.4 and 4.0 μm can assume different shapes. The 3.1 μm feature is observed on the entire Ceres surface except on Cerealia Facula, the brightest spot located on the dome of Occator crater. To perform a mineralogical investigation, absorption bands in reflectance spectra should be properly isolated by removing spectral continuum; hence, parameters as band centers and band depths must be estimated. The problem in the defining the continuum is in the VIR spectral range, which ends at 5.1 μm even though the reliable data, where the thermal contribution is properly removed, stops at 4.2 μm. Band shoulders located at longer wavelengths cannot be estimated. We defined different continua, with the aim to find the most appropriate to isolate the three spectral bands, whatever the region and the spatial resolution of hyperspectral images. The linear continuum seems to be the most suitable definition for our goals. Then, we performed an error evaluation on band depths and band centers introduced by this continuum definition.

A TRMM-Calibrated Infrared Technique for Global Rainfall Estimation

NASA Technical Reports Server (NTRS)

Negri, Andrew J.; Adler, Robert F.

2002-01-01

The development of a satellite infrared (IR) technique for estimating convective and stratiform rainfall and its application in studying the diurnal variability of rainfall on a global scale is presented. The Convective-Stratiform Technique (CST), calibrated by coincident, physically retrieved rain rates from the Tropical Rainfall Measuring Mission (TRMM) Precipitation Radar (PR), is applied over the global tropics during 2001. The technique is calibrated separately over land and ocean, making ingenious use of the IR data from the TRMM Visible/Infrared Scanner (VIRS) before application to global geosynchronous satellite data. The low sampling rate of TRMM PR imposes limitations on calibrating IR-based techniques; however, our research shows that PR observations can be applied to improve IR-based techniques significantly by selecting adequate calibration areas and calibration length. The diurnal cycle of rainfall, as well as the division between convective and stratiform rainfall will be presented. The technique is validated using available data sets and compared to other global rainfall products such as Global Precipitation Climatology Project (GPCP) IR product, calibrated with TRMM Microwave Imager (TMI) data. The calibrated CST technique has the advantages of high spatial resolution (4 km), filtering of non-raining cirrus clouds, and the stratification of the rainfall into its convective and stratiform components, the latter being important for the calculation of vertical profiles of latent heating.

The expression of Helicobacter pylori tfs plasticity zone cluster is regulated by pH and adherence, and its composition is associated with differential gastric IL-8 secretion.

PubMed

Silva, Bruno; Nunes, Alexandra; Vale, Filipa F; Rocha, Raquel; Gomes, João Paulo; Dias, Ricardo; Oleastro, Mónica

2017-08-01

Helicobacter pylori virulence is associated with different clinical outcomes. The existence of an intact dupA gene from tfs4b cluster has been suggested as a predictor for duodenal ulcer development. However, the role of tfs plasticity zone clusters in the development of ulcers remains unclear. We studied several H. pylori strains to characterize the gene arrangement of tfs3 and tfs4 clusters and their impact in the inflammatory response by infected gastric cells. The genome of 14 H. pylori strains isolated from Western patients, pediatric (n=10) and adult (n=4), was fully sequenced using the Illumina platform MiSeq, in addition to eight pediatric strains previously sequenced. These strains were used to infect human gastric cells, and the secreted interleukin-8 (IL-8) was quantified by ELISA. The expression of virB2, dupA, virB8, virB10, and virB6 was assessed by quantitative PCR in adherent and nonadherent fractions of H. pylori during in vitro co-infection, at different pH values. We have found that cagA-positive H. pylori strains harboring a complete tfs plasticity zone cluster significantly induce increased production of IL-8 from gastric cells. We have also found that the region spanning from virB2 to virB10 genes constitutes an operon, whose expression is increased in the adherent fraction of bacteria during infection, as well as in both adherent and nonadherent fractions at acidic conditions. A complete tfs plasticity zone cluster is a virulence factor that may be important for the colonization of H. pylori and to the development of severe outcomes of the infection with cagA-positive strains. © 2017 John Wiley & Sons Ltd.

Clinical study of Gene-Eden-VIR/Novirin in genital herpes: suppressive treatment safely decreases the duration of outbreaks in both severe and mild cases.

PubMed

Polansky, Hanan; Itzkovitz, Edan; Javaherian, Adrian

2016-12-01

We conducted a clinical study that tested the effect of suppressive treatment with the botanical product Gene-Eden-VIR/Novirin on genital herpes. Our previous paper showed that the treatment decreased the number of genital herpes outbreaks without any side effects. It also showed that the clinical effects of Gene-Eden-VIR/Novirin are mostly better than those reported in the studies that tested acyclovir, valacyclovir, and famciclovir. The current paper reports the effect of suppressive treatment with Gene-Eden-VIR/Novirin on the duration of outbreaks, in severe and mild genital herpes cases. The framework was a retrospective chart review. The population included 137 participants. The treatment was 1-4 capsules per day. The duration of treatment was 2-48 months. The study included three controls: baseline, no-treatment, and dose-response. The treatment decreased the duration of outbreaks in 87 % of participants and decreased the mean duration of outbreaks from 8.77 days and 6.7 days in the control groups to 2.87 days in the treatment group (P < 0.001, both groups). All participants reported no adverse experiences. This paper shows that suppressive treatment with Gene-Eden-VIR/Novirin decreased the duration of genital herpes outbreaks, in both severe and mild cases, without any side effects. Based on the results reported in this and our previous paper, we recommend suppressive treatment with Gene-Eden-VIR/Novirin as a natural alternative to both suppressive and episodic treatments with current drugs, in both severe and mild genital herpes cases. Trial registration ClinicalTrials.gov NCT02715752 Registered 17 March 2016 Retrospectively Registered.

The EOS CERES Global Cloud Mask

NASA Technical Reports Server (NTRS)

Berendes, T. A.; Welch, R. M.; Trepte, Q.; Schaaf, C.; Baum, B. A.

1996-01-01

To detect long-term climate trends, it is essential to produce long-term and consistent data sets from a variety of different satellite platforms. With current global cloud climatology data sets, such as the International Satellite Cloud Climatology Experiment (ISCCP) or CLAVR (Clouds from Advanced Very High Resolution Radiometer), one of the first processing steps is to determine whether an imager pixel is obstructed between the satellite and the surface, i.e., determine a cloud 'mask.' A cloud mask is essential to studies monitoring changes over ocean, land, or snow-covered surfaces. As part of the Earth Observing System (EOS) program, a series of platforms will be flown beginning in 1997 with the Tropical Rainfall Measurement Mission (TRMM) and subsequently the EOS-AM and EOS-PM platforms in following years. The cloud imager on TRMM is the Visible/Infrared Sensor (VIRS), while the Moderate Resolution Imaging Spectroradiometer (MODIS) is the imager on the EOS platforms. To be useful for long term studies, a cloud masking algorithm should produce consistent results between existing (AVHRR) data, and future VIRS and MODIS data. The present work outlines both existing and proposed approaches to detecting cloud using multispectral narrowband radiance data. Clouds generally are characterized by higher albedos and lower temperatures than the underlying surface. However, there are numerous conditions when this characterization is inappropriate, most notably over snow and ice of the cloud types, cirrus, stratocumulus and cumulus are the most difficult to detect. Other problems arise when analyzing data from sun-glint areas over oceans or lakes over deserts or over regions containing numerous fires and smoke. The cloud mask effort builds upon operational experience of several groups that will now be discussed.

Seasonal and interannual variations in CO and BC emissions from open biomass burning in Southern Africa during 1998-2005

NASA Astrophysics Data System (ADS)

Ito, Akinori; Ito, Akihiko; Akimoto, Hajime

2007-06-01

We estimate the emissions of carbon monoxide (CO) and black carbon (BC) from open vegetation fires in the Southern Hemisphere Africa from 1998 to 2005 using satellite information in conjunction with a biogeochemical model. Monthly burned areas at a 0.5-degree resolution are estimated from the Visible InfraRed Scanner (VIRS) fire count product and the MODerate resolution Imaging Spectroradiometer (MODIS) burned area data set associated with the MODIS tree cover imagery in grasslands and woodlands. The monthly fuel load distributions are derived from a 0.5-degree terrestrial carbon cycle model in conjunction with satellite data. The monthly maps of combustion factors and emission factors are estimated using empirical models that predict the effects of fuel conditions on these factors in grasslands and woodlands. Our annually averaged effective CO and BC emissions per area burned are 27 g CO m-2 and 0.17 g BC m-2 which are consistent with the products of fuel consumption and emission factors typically measured in southern Africa. The CO and BC emissions from open vegetation burning in southern Africa range from 45 Tg CO yr-1 and 0.26 Tg BC yr-1 for 2002 to 75 Tg CO yr-1 and 0.42 Tg BC yr-1 for 1998. The monthly averaged burned areas from VIRS fire counts peak earlier than modeled CO emissions. This characteristic delay between burned areas and emissions is mainly explained by significant changes in combustion factors for woodlands in our model. Consequently, the peaks in CO and BC emissions from our bottom-up approach are identical to those from previous top-down estimates using the Measurement Of the Pollution In The Troposphere (MOPITT) and the Total Ozone Mapping Spectrometer (TOMS) Aerosol Index (AI) data.

The Crowded Magnetosphere Of The Post-Common-Envelope Binary QS Virginis

NASA Astrophysics Data System (ADS)

Hill, Colin

2016-06-01

We present high-speed photometry and high-resolution spectroscopy of the short-period (Prot = 3.6 h) eclipsing post-common-envelope binary QS Virginis (QS Vir). Our UVES spectra span in excess of 6 orbits, over more than a year, and reveal the presence of several large prominences passing in front of both the M star and its white dwarf (WD) companion. Despite showing small variations on a time-scale of days, they persist for more than a year and may last decades. Roche tomography reveals a heavily spotted M star, with long-lived spots remaining in fixed locations, preferentially found on the hemisphere facing the WD. We find the 14,220 ± 350 K WD is relatively massive at 0.782 ± 0.013 M(_{odot}),with a radius of0.01068 ± 0.00007 R(_{odot}), consistent with evolutionary models. The tidally distorted M star has a mass of 0.382 ± 0.006 M(_{odot})and a radius of0.381 ± 0.003 R(_{odot}), also consistent with evolutionary models. Since the M star's radius is still within its Roche lobe and there is no evidence that it is overinflated, we conclude that QS Vir is most likely a pre-cataclysmic binary just about to become semidetached.

Galaxy luminosity function and Tully-Fisher relation: reconciled through rotation-curve studies

DOE Office of Scientific and Technical Information (OSTI.GOV)

Cattaneo, Andrea; Salucci, Paolo; Papastergis, Emmanouil, E-mail: andrea.cattaneo@oamp.fr, E-mail: salucci@sissa.it, E-mail: papastergis@astro.cornell.edu

2014-03-10

The relation between galaxy luminosity L and halo virial velocity v {sub vir} required to fit the galaxy luminosity function differs from the observed Tully-Fisher relation between L and disk speed v {sub rot}. Because of this, the problem of reproducing the galaxy luminosity function and the Tully-Fisher relation simultaneously has plagued semianalytic models since their inception. Here we study the relation between v {sub rot} and v {sub vir} by fitting observational average rotation curves of disk galaxies binned in luminosity. We show that the v {sub rot}-v {sub vir} relation that we obtain in this way can fullymore » account for this seeming inconsistency. Therefore, the reconciliation of the luminosity function with the Tully-Fisher relation rests on the complex dependence of v {sub rot} on v {sub vir}, which arises because the ratio of stellar mass to dark matter mass is a strong function of halo mass.« less

Statecraft and expansionary dynamics: A Virú outpost at Huaca Prieta, Chicama Valley, Peru

PubMed Central

Millaire, Jean-François; Prieto, Gabriel; Surette, Flannery; Redmond, Elsa M.; Spencer, Charles S.

2016-01-01

Interpolity interaction and regional control were central features of all early state societies, taking the form of trade—embedded in political processes to varying degrees—or interregional conquest strategies meant to expand the polity’s control or influence over neighboring territories. Cross-cultural analyses of early statecraft suggest that territorial expansion was an integral part of the process of primary state formation, closely associated with the delegation of authority to subordinate administrators and the construction of core outposts of the state in foreign territories. We report here on a potential case of a core outpost, associated with the early Virú state, at the site of Huaca Prieta in the Chicama Valley, located 75 km north of the Virú state heartland on the north coast of Peru. This site is discussed in the context of other possible Virú outposts in the Moche Valley, Pampa La Cruz, and Huaca Las Estrellas, and as part of a broader reflection on expansionary dynamics and statecraft. PMID:27671633

Statecraft and expansionary dynamics: A Virú outpost at Huaca Prieta, Chicama Valley, Peru.

PubMed

Millaire, Jean-François; Prieto, Gabriel; Surette, Flannery; Redmond, Elsa M; Spencer, Charles S

2016-10-11

Interpolity interaction and regional control were central features of all early state societies, taking the form of trade-embedded in political processes to varying degrees-or interregional conquest strategies meant to expand the polity's control or influence over neighboring territories. Cross-cultural analyses of early statecraft suggest that territorial expansion was an integral part of the process of primary state formation, closely associated with the delegation of authority to subordinate administrators and the construction of core outposts of the state in foreign territories. We report here on a potential case of a core outpost, associated with the early Virú state, at the site of Huaca Prieta in the Chicama Valley, located 75 km north of the Virú state heartland on the north coast of Peru. This site is discussed in the context of other possible Virú outposts in the Moche Valley, Pampa La Cruz, and Huaca Las Estrellas, and as part of a broader reflection on expansionary dynamics and statecraft.

VirSSPA- a virtual reality tool for surgical planning workflow.

PubMed

Suárez, C; Acha, B; Serrano, C; Parra, C; Gómez, T

2009-03-01

A virtual reality tool, called VirSSPA, was developed to optimize the planning of surgical processes. Segmentation algorithms for Computed Tomography (CT) images: a region growing procedure was used for soft tissues and a thresholding algorithm was implemented to segment bones. The algorithms operate semiautomati- cally since they only need seed selection with the mouse on each tissue segmented by the user. The novelty of the paper is the adaptation of an enhancement method based on histogram thresholding applied to CT images for surgical planning, which simplifies subsequent segmentation. A substantial improvement of the virtual reality tool VirSSPA was obtained with these algorithms. VirSSPA was used to optimize surgical planning, to decrease the time spent on surgical planning and to improve operative results. The success rate increases due to surgeons being able to see the exact extent of the patient's ailment. This tool can decrease operating room time, thus resulting in reduced costs. Virtual simulation was effective for optimizing surgical planning, which could, consequently, result in improved outcomes with reduced costs.

Adhesion and host cell modulation: critical pathogenicity determinants of Bartonella henselae

PubMed Central

2011-01-01

Bartonella henselae, the agent of cat scratch disease and the vasculoproliferative disorders bacillary angiomatosis and peliosis hepatis, contains to date two groups of described pathogenicity factors: adhesins and type IV secretion systems. Bartonella adhesin A (BadA), the Trw system and possibly filamentous hemagglutinin act as promiscous or specific adhesins, whereas the virulence locus (Vir)B/VirD4 type IV secretion system modulates a variety of host cell functions. BadA mediates bacterial adherence to endothelial cells and extracellular matrix proteins and triggers the induction of angiogenic gene programming. The VirB/VirD4 type IV secretion system is responsible for, e.g., inhibition of host cell apoptosis, bacterial persistence in erythrocytes, and endothelial sprouting. The Trw-conjugation system of Bartonella spp. mediates host-specific adherence to erythrocytes. Filamentous hemagglutinins represent additional potential pathogenicity factors which are not yet characterized. The exact molecular functions of these pathogenicity factors and their contribution to an orchestral interplay need to be analyzed to understand B. henselae pathogenicity in detail. PMID:21489243

CLASH: PRECISE NEW CONSTRAINTS ON THE MASS PROFILE OF THE GALAXY CLUSTER A2261

DOE Office of Scientific and Technical Information (OSTI.GOV)

Coe, Dan; Postman, Marc; Bradley, Larry

2012-09-20

We precisely constrain the inner mass profile of A2261 (z = 0.225) for the first time and determine that this cluster is not 'overconcentrated' as found previously, implying a formation time in agreement with {Lambda}CDM expectations. These results are based on multiple strong-lensing analyses of new 16-band Hubble Space Telescope imaging obtained as part of the Cluster Lensing and Supernova survey with Hubble. Combining this with revised weak-lensing analyses of Subaru wide-field imaging with five-band Subaru + KPNO photometry, we place tight new constraints on the halo virial mass M{sub vir} = (2.2 {+-} 0.2) Multiplication-Sign 10{sup 15} M{sub Sun}more » h {sup -1}{sub 70} (within r{sub vir} Almost-Equal-To 3 Mpc h {sup -1}{sub 70}) and concentration c{sub vir} = 6.2 {+-} 0.3 when assuming a spherical halo. This agrees broadly with average c(M, z) predictions from recent {Lambda}CDM simulations, which span 5 {approx}< (c) {approx}< 8. Our most significant systematic uncertainty is halo elongation along the line of sight (LOS). To estimate this, we also derive a mass profile based on archival Chandra X-ray observations and find it to be {approx}35% lower than our lensing-derived profile at r{sub 2500} {approx} 600 kpc. Agreement can be achieved by a halo elongated with a {approx}2:1 axis ratio along our LOS. For this elongated halo model, we find M{sub vir} = (1.7 {+-} 0.2) Multiplication-Sign 10{sup 15} M{sub Sun} h {sup -1}{sub 70} and c{sub vir} = 4.6 {+-} 0.2, placing rough lower limits on these values. The need for halo elongation can be partially obviated by non-thermal pressure support and, perhaps entirely, by systematic errors in the X-ray mass measurements. We estimate the effect of background structures based on MMT/Hectospec spectroscopic redshifts and find that these tend to lower M{sub vir} further by {approx}7% and increase c{sub vir} by {approx}5%.« less

A Shigella flexneri Virulence Plasmid Encoded Factor Controls Production of Outer Membrane Vesicles

PubMed Central

Sidik, Saima; Kottwitz, Haila; Benjamin, Jeremy; Ryu, Julie; Jarrar, Ameer; Garduno, Rafael; Rohde, John R.

2014-01-01

Shigella spp. use a repertoire of virulence plasmid-encoded factors to cause shigellosis. These include components of a Type III Secretion Apparatus (T3SA) that is required for invasion of epithelial cells and many genes of unknown function. We constructed an array of 99 deletion mutants comprising all genes encoded by the virulence plasmid (excluding those known to be required for plasmid maintenance) of Shigella flexneri. We screened these mutants for their ability to bind the dye Congo red: an indicator of T3SA function. This screen focused our attention on an operon encoding genes that modify the cell envelope including virK, a gene of partially characterized function. We discovered that virK is required for controlled release of proteins to the culture supernatant. Mutations in virK result in a temperature-dependent overproduction of outer membrane vesicles (OMVs). The periplasmic chaperone/protease DegP, a known regulator of OMV production in Escherichia coli (encoded by a chromosomal gene), was found to similarly control OMV production in S. flexneri. Both virK and degP show genetic interactions with mxiD, a structural component of the T3SA. Our results are consistent with a model in which VirK and DegP relieve the periplasmic stress that accompanies assembly of the T3SA. PMID:25378474

Circumbinary Planets Orbiting the Rapidly Pulsating Subdwarf B-type Binary NY Vir

NASA Astrophysics Data System (ADS)

Qian, S.-B.; Zhu, L.-Y.; Dai, Z.-B.; Fernández-Lajús, E.; Xiang, F.-Y.; He, J.-J.

2012-02-01

We report here the tentative discovery of a Jovian planet in orbit around the rapidly pulsating subdwarf B-type (sdB-type) eclipsing binary NY Vir. By using newly determined eclipse times together with those collected from the literature, we detect that the observed-calculated (O - C) curve of NY Vir shows a small-amplitude cyclic variation with a period of 7.9 yr and a semiamplitude of 6.1 s, while it undergoes a downward parabolic change (revealing a period decrease at a rate of \\dot{P}=-9.2\\times {10^{-12}}). The periodic variation was analyzed for the light-travel-time effect via the presence of a third body. The mass of the tertiary companion was determined to be M 3sin i' = 2.3(± 0.3)M Jupiter when a total mass of 0.60 M ⊙ for NY Vir is adopted. This suggests that it is most probably a giant circumbinary planet orbiting NY Vir at a distance of about 3.3 astronomical units (AU). Since the rate of period decrease cannot be explained by true angular momentum loss caused by gravitational radiation or/and magnetic braking, the observed downward parabolic change in the O - C diagram may be only a part of a long-period (longer than 15 years) cyclic variation, which may reveal the presence of another Jovian planet (~2.5 M Jupiter) in the system.

Register of new fruit and nut cultivars list 49

USDA-ARS?s Scientific Manuscript database

Ariana (Soft-seeded VIR-2). Tart-sweet, soft seeded red medium to large pomegranate. Origin: Open pollinated seedling number 31 by A.D. Strebkova. Selected in Turkmenistan by N.I. Zaktreger, O.F. Mizgireva, and A.D. Strebkova, VIR Kara-Kala Experimental Station. Introduced from the Turkmenistan Expe...

Linear Models for Field Trials, Smoothing, and Cross-Validation.

DTIC Science & Technology

1984-01-01

TSR-2?79 UNCLASSIFIED DRAG29-80-C-9841 F /G 12/ 1 NL EhhiuEammhhihhhihhiu iI. U.. III1 11111- 1.2 11111 L.1g 1111IL25 11111J.4 I 6 MICROCOPY RESOLUTION...0 (2.2) where (de Hoog , Speed and Williams, 1985) 60 - 1 V-IR( RT- -1R)-RTV- 1 + (2.3) = I - HI - P R)V(I - P R (23 Here I is the n x n identity matrix...Here the model would be yi = (t ) + ni and one possible penalty function is f (&"(t)) 2dt + E2 1 Natural points of departure for generalizing the least

Neutron Absorption Measurements Constrain Eucrite-Diogenite Mixing in Vesta's Regolith

NASA Technical Reports Server (NTRS)

Prettyman, T. H.; Mittlefehldt, D. W.; Feldman, W. C.; Hendricks, J. S.; Lawrence, D. J.; Peplowski, P. N.; Toplis, M. J.; Yamashita, N.; Beck, A.; LeCorre, L.;

Type-IVC Secretion System: A Novel Subclass of Type IV Secretion System (T4SS) Common Existing in Gram-Positive Genus Streptococcus

PubMed Central

Chen, Chen; Gao, George F.

2012-01-01

A growing number of pathogens are being found to possess specialized secretion systems which they use in various ways to subvert host defenses. Type IV secretion system (T4SS) is one of versatile secretion systems essential for the virulence and even survival of some bacteria species, and they enable the secretion of protein and DNA substrates across the cell envelope. T4SS was once believed to be present only in Gram-negative bacteria. In this study, we present evidence of a new subclass of T4SS, Type-IVC secretion system and indicate its common existence in the Gram-positive bacterial genus Streptococcus. We further identified that VirB1, VirB4, VirB6 and VirD4 are the minimal key components of this system. Using genome comparisons and evolutionary relationship analysis, we proposed that Type-IVC secretion system is movable via transposon factors and mediates the conjugative transfer of DNA, enhances bacterial pathogenicity, and could cause large-scale outbreaks of infections in humans. PMID:23056296

A multifactor regulatory circuit involving H-NS, VirF and an antisense RNA modulates transcription of the virulence gene icsA of Shigella flexneri.

PubMed

Tran, Chi Nhan; Giangrossi, Mara; Prosseda, Gianni; Brandi, Anna; Di Martino, Maria Letizia; Colonna, Bianca; Falconi, Maurizio

2011-10-01

The icsA gene of Shigella encodes a structural protein involved in colonization of the intestinal mucosa by bacteria. This gene is expressed upon invasion of the host and is controlled by a complex regulatory circuit involving the nucleoid protein H-NS, the AraC-like transcriptional activator VirF, and a 450 nt antisense RNA (RnaG) acting as transcriptional attenuator. We investigated on the interplay of these factors at the molecular level. DNase I footprints reveal that both H-NS and VirF bind to a region including the icsA and RnaG promoters. H-NS is shown to repress icsA transcription at 30°C but not at 37°C, suggesting a significant involvement of this protein in the temperature-regulated expression of icsA. We also demonstrate that VirF directly stimulates icsA transcription and is able to alleviate H-NS repression in vitro. According to these results, icsA expression is derepressed in hns- background and overexpressed when VirF is provided in trans. Moreover, we find that RnaG-mediated transcription attenuation depends on 80 nt at its 5'-end, a stretch carrying the antisense region. Bases engaged in the initial contact leading to sense-antisense pairing have been identified using synthetic RNA and DNA oligonucleotides designed to rebuild and mutagenize the two stem-loop motifs of the antisense region.

Plasmodium vivax VIR Proteins Are Targets of Naturally-Acquired Antibody and T Cell Immune Responses to Malaria in Pregnant Women.

PubMed

Requena, Pilar; Rui, Edmilson; Padilla, Norma; Martínez-Espinosa, Flor E; Castellanos, Maria Eugenia; Bôtto-Menezes, Camila; Malheiro, Adriana; Arévalo-Herrera, Myriam; Kochar, Swati; Kochar, Sanjay K; Kochar, Dhanpat K; Umbers, Alexandra J; Ome-Kaius, Maria; Wangnapi, Regina; Hans, Dhiraj; Menegon, Michela; Mateo, Francesca; Sanz, Sergi; Desai, Meghna; Mayor, Alfredo; Chitnis, Chetan C; Bardají, Azucena; Mueller, Ivo; Rogerson, Stephen; Severini, Carlo; Fernández-Becerra, Carmen; Menéndez, Clara; Del Portillo, Hernando; Dobaño, Carlota

2016-10-01

P. vivax infection during pregnancy has been associated with poor outcomes such as anemia, low birth weight and congenital malaria, thus representing an important global health problem. However, no vaccine is currently available for its prevention. Vir genes were the first putative virulent factors associated with P. vivax infections, yet very few studies have examined their potential role as targets of immunity. We investigated the immunogenic properties of five VIR proteins and two long synthetic peptides containing conserved VIR sequences (PvLP1 and PvLP2) in the context of the PregVax cohort study including women from five malaria endemic countries: Brazil, Colombia, Guatemala, India and Papua New Guinea (PNG) at different timepoints during and after pregnancy. Antibody responses against all antigens were detected in all populations, with PNG women presenting the highest levels overall. P. vivax infection at sample collection time was positively associated with antibody levels against PvLP1 (fold-increase: 1.60 at recruitment -first antenatal visit-) and PvLP2 (fold-increase: 1.63 at delivery), and P. falciparum co-infection was found to increase those responses (for PvLP1 at recruitment, fold-increase: 2.25). Levels of IgG against two VIR proteins at delivery were associated with higher birth weight (27 g increase per duplicating antibody levels, p<0.05). Peripheral blood mononuclear cells from PNG uninfected pregnant women had significantly higher antigen-specific IFN-γ TH1 responses (p=0.006) and secreted less pro-inflammatory cytokines TNF and IL-6 after PvLP2 stimulation than P. vivax-infected women (p<0.05). These data demonstrate that VIR antigens induce the natural acquisition of antibody and T cell memory responses that might be important in immunity to P. vivax during pregnancy in very diverse geographical settings.

Interaction of Arabidopsis Trihelix-Domain Transcription Factors VFP3 and VFP5 with Agrobacterium Virulence Protein VirF

PubMed Central

García-Cano, Elena; Magori, Shimpei; Sun, Qi; Ding, Zehong; Lazarowitz, Sondra G.; Citovsky, Vitaly

2015-01-01

Agrobacterium is a natural genetic engineer of plants that exports several virulence proteins into host cells in order to take advantage of the cell machinery to facilitate transformation and support bacterial growth. One of these effectors is the F-box protein VirF, which presumably uses the host ubiquitin/proteasome system (UPS) to uncoat the packaging proteins from the invading bacterial T-DNA. By analogy to several other bacterial effectors, VirF most likely has several functions in the host cell and, therefore, several interacting partners among host proteins. Here we identify one such interactor, an Arabidopsis trihelix-domain transcription factor VFP3, and further show that its very close homolog VFP5 also interacted with VirF. Interestingly, interactions of VirF with either VFP3 or VFP5 did not activate the host UPS, suggesting that VirF might play other UPS-independent roles in bacterial infection. To better understand the potential scope of VFP3 function, we used RNAi to reduce expression of the VFP3 gene. Transcriptome profiling of these VFP3-silenced plants using high-throughput cDNA sequencing (RNA-seq) revealed that VFP3 substantially affected plant gene expression; specifically, 1,118 genes representing approximately 5% of all expressed genes were significantly either up- or down-regulated in the VFP3 RNAi line compared to wild-type Col-0 plants. Among the 507 up-regulated genes were genes implicated in the regulation of transcription, protein degradation, calcium signaling, and hormone metabolism, whereas the 611 down-regulated genes included those involved in redox regulation, light reactions of photosynthesis, and metabolism of lipids, amino acids, and cell wall. Overall, this pattern of changes in gene expression is characteristic of plants under stress. Thus, VFP3 likely plays an important role in controlling plant homeostasis. PMID:26571494

Implication of the VirD4 coupling protein of the Lvh type 4 secretion system in virulence phenotypes of Legionella pneumophila.

PubMed

Bandyopadhyay, Purnima; Lang, Elza A S; Rasaputra, Komal S; Steinman, Howard M

2013-08-01

The genome of the Philadelphia-1 strain of Legionella pneumophila, the causative organism of Legionnaires' disease, encodes two virulence-associated type 4 secretion systems (T4SSs), the Dot/Icm type 4B (T4BSS) and the Lvh type 4A (T4ASS). Broth stationary-phase cultures of most dot/icm mutants are defective in entry and evasion of phagosome acidification. However, those virulence defects can be reversed by incubating broth cultures of dot/icm mutants in water, termed water stress (WS). WS reversal requires the lvh T4ASS locus, suggesting an interaction between the two T4SSs in producing Legionella virulence phenotypes. In the current work, the loss of WS reversal in a dotA Δlvh mutant of strain JR32 was shown to be attributable to loss of the lvh virD4 gene, encoding the putative coupling protein of the T4ASS. Transformation of a dotA Δlvh mutant with virD4 also reversed entry and phagosome acidification defects in broth cultures. In addition, broth cultures of Δlvh and ΔvirD4 mutants, which were dot/icm(+), showed 5-fold and >6-fold increases in translocation of the Dot/Icm translocation substrates, proteins RalF and SidD, respectively. These data demonstrate that the Lvh T4ASS functions in both broth stationary-phase cultures conventionally used for infection and cultures exposed to WS treatment. Our studies in a dotA Δlvh mutant and in a dot/icm(+) background establish that VirD4 and the Lvh T4ASS contribute to virulence phenotypes and are consistent with independent functioning of Dot/Icm and Lvh T4SSs or functional substitution of the Lvh VirD4 protein for a component(s) of the Dot/Icm T4BSS.

Implication of the VirD4 Coupling Protein of the Lvh Type 4 Secretion System in Virulence Phenotypes of Legionella pneumophila

PubMed Central

Bandyopadhyay, Purnima; Lang, Elza A. S.; Rasaputra, Komal S.

2013-01-01

The genome of the Philadelphia-1 strain of Legionella pneumophila, the causative organism of Legionnaires' disease, encodes two virulence-associated type 4 secretion systems (T4SSs), the Dot/Icm type 4B (T4BSS) and the Lvh type 4A (T4ASS). Broth stationary-phase cultures of most dot/icm mutants are defective in entry and evasion of phagosome acidification. However, those virulence defects can be reversed by incubating broth cultures of dot/icm mutants in water, termed water stress (WS). WS reversal requires the lvh T4ASS locus, suggesting an interaction between the two T4SSs in producing Legionella virulence phenotypes. In the current work, the loss of WS reversal in a dotA Δlvh mutant of strain JR32 was shown to be attributable to loss of the lvh virD4 gene, encoding the putative coupling protein of the T4ASS. Transformation of a dotA Δlvh mutant with virD4 also reversed entry and phagosome acidification defects in broth cultures. In addition, broth cultures of Δlvh and ΔvirD4 mutants, which were dot/icm+, showed 5-fold and >6-fold increases in translocation of the Dot/Icm translocation substrates, proteins RalF and SidD, respectively. These data demonstrate that the Lvh T4ASS functions in both broth stationary-phase cultures conventionally used for infection and cultures exposed to WS treatment. Our studies in a dotA Δlvh mutant and in a dot/icm+ background establish that VirD4 and the Lvh T4ASS contribute to virulence phenotypes and are consistent with independent functioning of Dot/Icm and Lvh T4SSs or functional substitution of the Lvh VirD4 protein for a component(s) of the Dot/Icm T4BSS. PMID:23729650

Semi-empirical catalog of early-type galaxy-halo systems: dark matter density profiles, halo contraction and dark matter annihilation strength

DOE Office of Scientific and Technical Information (OSTI.GOV)

Chae, Kyu-Hyun; Kravtsov, Andrey V.; Frieman, Joshua A.

With Sloan Digital Sky Survey galaxy data and halo data from up-to-date N-body simulations within the ΛCDM framework we construct a semi-empirical catalog (SEC) of early-type galaxy-halo systems by making a self-consistent bivariate statistical match of stellar mass (M{sub *}) and velocity dispersion (σ) with halo virial mass (M{sub vir}) as demonstrated here for the first time. We then assign stellar mass profile and velocity dispersion profile parameters to each system in the SEC using their observed correlations with M{sub *} and σ. Simultaneously, we solve for dark matter density profile of each halo using the spherical Jeans equation. Themore » resulting dark matter density profiles deviate in general from the dissipationless profile of Navarro-Frenk-White or Einasto and their mean inner density slope and concentration vary systematically with M{sub vir}. Statistical tests of the distribution of profiles at fixed M{sub vir} rule out the null hypothesis that it follows the distribution predicted by dissipationless N-body simulations for M{sub vir}∼<10{sup 13.5} {sup –} {sup 14.5} M{sub s}un. These dark matter profiles imply that dark matter density is, on average, enhanced significantly in the inner region of halos with M{sub vir}∼<10{sup 13.5} {sup –} {sup 14.5} M{sub s}un supporting halo contraction. The main characteristics of halo contraction are: (1) the mean dark matter density within the effective radius has increased by a factor varying systematically up to ≈ 3–4 at M{sub vir} = 10{sup 12} M{sub s}un, and (2) the inner density slope has a mean of (α) ≈ 1.3 with ρ{sub dm}(r)∝r{sup −α} and a halo-to-halo rms scatter of rms(α) ∼ 0.4–0.5 for 10{sup 12} M{sub s}un∼« less

Spatial downscaling of soil prediction models based on weighted generalized additive models in smallholder farm settings.

PubMed

Xu, Yiming; Smith, Scot E; Grunwald, Sabine; Abd-Elrahman, Amr; Wani, Suhas P; Nair, Vimala D

2017-09-11

Digital soil mapping (DSM) is gaining momentum as a technique to help smallholder farmers secure soil security and food security in developing regions. However, communications of the digital soil mapping information between diverse audiences become problematic due to the inconsistent scale of DSM information. Spatial downscaling can make use of accessible soil information at relatively coarse spatial resolution to provide valuable soil information at relatively fine spatial resolution. The objective of this research was to disaggregate the coarse spatial resolution soil exchangeable potassium (K ex ) and soil total nitrogen (TN) base map into fine spatial resolution soil downscaled map using weighted generalized additive models (GAMs) in two smallholder villages in South India. By incorporating fine spatial resolution spectral indices in the downscaling process, the soil downscaled maps not only conserve the spatial information of coarse spatial resolution soil maps but also depict the spatial details of soil properties at fine spatial resolution. The results of this study demonstrated difference between the fine spatial resolution downscaled maps and fine spatial resolution base maps is smaller than the difference between coarse spatial resolution base maps and fine spatial resolution base maps. The appropriate and economical strategy to promote the DSM technique in smallholder farms is to develop the relatively coarse spatial resolution soil prediction maps or utilize available coarse spatial resolution soil maps at the regional scale and to disaggregate these maps to the fine spatial resolution downscaled soil maps at farm scale.

A TRMM-Calibrated Infrared Technique for Global Rainfall Estimation

NASA Technical Reports Server (NTRS)

Negri, Andrew J.; Adler, Robert F.; Xu, Li-Ming

2003-01-01

This paper presents the development of a satellite infrared (IR) technique for estimating convective and stratiform rainfall and its application in studying the diurnal variability of rainfall on a global scale. The Convective-Stratiform Technique (CST), calibrated by coincident, physically retrieved rain rates from the Tropical Rainfall Measuring Mission (TRMM) Precipitation Radar (PR), is applied over the global tropics during summer 2001. The technique is calibrated separately over land and ocean, making ingenious use of the IR data from the TRMM Visible/Infrared Scanner (VIRS) before application to global geosynchronous satellite data. The low sampling rate of TRMM PR imposes limitations on calibrating IR- based techniques; however, our research shows that PR observations can be applied to improve IR-based techniques significantly by selecting adequate calibration areas and calibration length. The diurnal cycle of rainfall, as well as the division between convective and t i f m rainfall will be presented. The technique is validated using available data sets and compared to other global rainfall products such as Global Precipitation Climatology Project (GPCP) IR product, calibrated with TRMM Microwave Imager (TMI) data. The calibrated CST technique has the advantages of high spatial resolution (4 km), filtering of non-raining cirrus clouds, and the stratification of the rainfall into its convective and stratiform components, the latter being important for the calculation of vertical profiles of latent heating.

Composition of Rheasilvia Basin on Asteroid Vesta

NASA Technical Reports Server (NTRS)

Ammannito, Eleonora; DeSanctis, Maria Christina; Capaccioni, Fabrizio; Capria, Maria Teresa; Combe, Jean Philippe; Frigeri, Alessandro; Jaumann, Ralf; Longobardo, Andrea; Marchi, Somone; McCord, Thomas B.;

Whole-genome sequencing of Borrelia garinii BgVir, isolated from Taiga ticks (Ixodes persulcatus).

PubMed

Brenner, Evgeniy V; Kurilshikov, Alexander M; Stronin, Oleg V; Fomenko, Nataliya V

2012-10-01

Most Lyme borreliosis cases in Russia result from Borrelia garinii NT29 group infection. Borrelias of this group circulate exclusively in Ixodes persulcatus ticks, which are seldom found beyond Russia and the far east. Here we report the whole-genome sequence of Borrelia garinii BgVir isolated from an I. persulcatus female.

The wind of the M-type AGB star RT Virginis probed by VLTI/MIDI

NASA Astrophysics Data System (ADS)

Sacuto, S.; Ramstedt, S.; Höfner, S.; Olofsson, H.; Bladh, S.; Eriksson, K.; Aringer, B.; Klotz, D.; Maercker, M.

2013-03-01

Aims: We study the circumstellar environment of the M-type AGB star RT Vir using mid-infrared high spatial resolution observations from the ESO-VLTI focal instrument MIDI. The aim of this study is to provide observational constraints on theoretical prediction that the winds of M-type AGB objects can be driven by photon scattering on iron-free silicate grains located in the close environment (about 2 to 3 stellar radii) of the star. Methods: We interpreted spectro-interferometric data, first using wavelength-dependent geometric models. We then used a self-consistent dynamic model atmosphere containing a time-dependent description of grain growth for pure forsterite dust particles to reproduce the photometric, spectrometric, and interferometric measurements of RT Vir. Since the hydrodynamic computation needs stellar parameters as input, a considerable effort was first made to determine these parameters. Results: MIDI differential phases reveal the presence of an asymmetry in the stellar vicinity. Results from the geometrical modeling give us clues to the presence of aluminum and silicate dust in the close circumstellar environment (<5 stellar radii). Comparison between spectro-interferometric data and a self-consistent dust-driven wind model reveals that silicate dust has to be present in the region between 2 to 3 stellar radii to reproduce the 59 and 63 m baseline visibility measurements around 9.8 μm. This gives additional observational evidence in favor of winds driven by photon scattering on iron-free silicate grains located in the close vicinity of an M-type star. However, other sources of opacity are clearly missing to reproduce the 10-13 μm visibility measurements for all baselines. Conclusions: This study is a first attempt to understand the wind mechanism of M-type AGB stars by comparing photometric, spectrometric, and interferometric measurements with state-of-the-art, self-consistent dust-driven wind models. The agreement of the dynamic model atmosphere with interferometric measurements in the 8-10 μm spectral region gives additional observational evidence that the winds of M-type stars can be driven by photon scattering on iron-free silicate grains. Finally, a larger statistical study and progress in advanced self-consistent 3D modeling are still required to solve the remaining problems. Based on observations made with the Very Large Telescope Interferometer at Paranal Observatory under programs 083.D-0234 and 086.D-0737 (Open Time Observations).

Analysis of membrane protein genes in a Brazilian isolate of Anaplasma marginale.

PubMed

G Junior, Daniel S; Araújo, Flábio R; Almeida Junior, Nalvo F; Adi, Said S; Cheung, Luciana M; Fragoso, Stenio P; Ramos, Carlos A N; Oliveira, Renato Henrique M de; Santos, Caroline S; Bacanelli, Gisele; Soares, Cleber O; Rosinha, Grácia M S; Fonseca, Adivaldo H

2010-11-01

The sequencing of the complete genome of Anaplasma marginale has enabled the identification of several genes that encode membrane proteins, thereby increasing the chances of identifying candidate immunogens. Little is known regarding the genetic variability of genes that encode membrane proteins in A. marginale isolates. The aim of the present study was to determine the degree of conservation of the predicted amino acid sequences of OMP1, OMP4, OMP5, OMP7, OMP8, OMP10, OMP14, OMP15, SODb, OPAG1, OPAG3, VirB3, VirB9-1, PepA, EF-Tu and AM854 proteins in a Brazilian isolate of A. marginale compared to other isolates. Hence, primers were used to amplify these genes: omp1, omp4, omp5, omp7, omp8, omp10, omp14, omp15, sodb, opag1, opag3, virb3, VirB9-1, pepA, ef-tu and am854. After polimerase chain reaction amplification, the products were cloned and sequenced using the Sanger method and the predicted amino acid sequence were multi-aligned using the CLUSTALW and MEGA 4 programs, comparing the predicted sequences between the Brazilian, Saint Maries, Florida and A. marginale centrale isolates. With the exception of outer membrane protein (OMP) 7, all proteins exhibited 92-100% homology to the other A. marginale isolates. However, only OMP1, OMP5, EF-Tu, VirB3, SODb and VirB9-1 were selected as potential immunogens capable of promoting cross-protection between isolates due to the high degree of homology (over 72%) also found with A. (centrale) marginale.

Technology and Career Preparation: Using Virtual Interview Recordings (VIRs) in an Apparel, Design, and Textiles (ADT) Professional Seminar Course

ERIC Educational Resources Information Center

Eike, Rachel J.; Rowell, Amy; Mihuta, Tiffani

2016-01-01

The purpose of this study was to identify key virtual-recorded interview (VIR) skills that are essential to Apparel, Design, and Textile (ADT) student performance. The virtual, computer-recording interview platform, InterviewStream, was used as the data collection instrument in this qualitative, exploratory case study. Virtual interviews have been…

VirGO: A Visual Browser for the ESO Science Archive Facility

NASA Astrophysics Data System (ADS)

Chéreau, F.

2008-08-01

VirGO is the next generation Visual Browser for the ESO Science Archive Facility developed by the Virtual Observatory (VO) Systems Department. It is a plug-in for the popular open source software Stellarium adding capabilities for browsing professional astronomical data. VirGO gives astronomers the possibility to easily discover and select data from millions of observations in a new visual and intuitive way. Its main feature is to perform real-time access and graphical display of a large number of observations by showing instrumental footprints and image previews, and to allow their selection and filtering for subsequent download from the ESO SAF web interface. It also allows the loading of external FITS files or VOTables, the superimposition of Digitized Sky Survey (DSS) background images, and the visualization of the sky in a `real life' mode as seen from the main ESO sites. All data interfaces are based on Virtual Observatory standards which allow access to images and spectra from external data centers, and interaction with the ESO SAF web interface or any other VO applications supporting the PLASTIC messaging system. The main website for VirGO is at http://archive.eso.org/cms/virgo.

IR photometry and models for the dust shells of two oxygen Mira variables

NASA Astrophysics Data System (ADS)

Bogdanov, M. B.; Taranova, O. G.; Shenavrin, V. I.

2015-05-01

Long-term JHKLM photometric measurements of the oxygen Mira variables RU Her and RS Vir are presented. Variations of the brightnesses and colors of these stars over the observation period are analyzed, and master light curves and color indices of these stars are derived. A linear trend was present in the mean infrared brightness of RS Vir on a time scale of ˜6000 day, possibly related to changes in the dust shell of the Mira. The results of model calculations of spherically symmetric dust shells of stars based on mean-flux data supplemented by observations from the IRAS and AKARI satellites in the intermediate- and far-IR are presented. The visual optical depth of the dust shell of RU Her, which has a temperature at its inner boundary T 1 = 590 K, is quite low: τ V = 0.33. The dust shell of RS Vir is much cooler ( T 1 = 410 K), and has τ V = 0.77. The estimated mass-loss rate of RU Her is 6.2 × 10-7 M ⊙/yr, while the mass-loss rate of RS Vir is 7.1 × 10-7 M ⊙/yr.

Physical Parameters of Components in Close Binary Systems: IV

NASA Astrophysics Data System (ADS)

Gazeas, K. D.; Baran, A.; Niarchos, P.; Zola, S.; Kreiner, J. M.; Ogloza, W.; Rucinski, S. M.; Zakrzewski, B.; Siwak, M.; Pigulski, A.; Drozdz, M.

2005-03-01

The paper presents new geometric, photometric and absolute parameters, derived from combined spectroscopic and photometric solutions, for ten contact binary systems. The analysis shows that three systems (EF Boo, GM Dra and SW Lac) are of W-type with shallow to moderate contact. Seven systems (V417 Aql, AH Aur, YY CrB, UX Eri, DZ Psc, GR Vir and NN Vir) are of A-type in a deep contact configuration. For six systems (V417 Aql, YY CrB, GM Dra, UX Eri, SW Lac and GR Vir) a spot model is introduced to explain the O'Connell effect in their light curves. The photometric and geometric elements of the systems are combined with the spectroscopic data taken at David Dunlap Observatory to yield the absolute parameters of the components.

Comparison of Newly Acquired Lunar Spectra with the Titanium Abundance Maps Derived from Clementine

NASA Technical Reports Server (NTRS)

Holsclaw, G. M.; McClintock, W. E.; Robinson, M. S.

2005-01-01

The Mercury Atmospheric and Surface Composition Spectrometer (MASCS) is one of seven science instruments onboard NASA's MESSENGER mission, currently en-route to the planet Mercury. One of MASCS s components, referred to as the Visible and Near Infrared Spectrograph (VIRS), will record reflectance spectra of the surface in order to characterize the mineralogy of the planet [1]. The lunar highlands and the average mercurian crust are proposed to be compositionally similar [i.e. 2]. In preparation to interpret VIRS reflectance spectra of Mercury to be first obtained in 2008, the Moon has been observed with an engineering model of the VIRS from a ground-based telescope. In this study, the ultraviolet and visible region of the spectrum is compared with titanium content in the lunar regolith.

Toscana virus meningitis case in Switzerland: an example of the ezVIR bioinformatics pipeline utility for the identification of emerging viruses.

PubMed

Cordey, S; Bel, M; Petty, T J; Docquier, M; Sacco, L; Turin, L; Cherpillod, P; Emonet, S; Louis-Simonet, M; Zdobnov, E M; Ambrosioni, J; Kaiser, L

2015-04-01

Toscana virus (TOSV) represents a frequent cause of viral meningitis in the Mediterranean Basin that remains neglected in neighbouring countries. We report a documented TOSV meningitis case in a traveller returning from Tuscany to Switzerland. While routine serological and PCR assays could not discriminate between TOSV and Sandfly fever Naples virus infection, a high-throughput sequencing performed directly on the cerebrospinal fluid specimen and analysed with the ezVIR pipeline provided an unequivocal viral diagnostic. TOSV could be unequivocally considered as the aetiological agent, proving the potential of ezVIR to improve standard diagnostics in cases of infection with uncommon or emerging viruses. Copyright © 2014 European Society of Clinical Microbiology and Infectious Diseases. Published by Elsevier Ltd. All rights reserved.

Enhancing Spatial Resolution of Remotely Sensed Imagery Using Deep Learning

NASA Astrophysics Data System (ADS)

Beck, J. M.; Bridges, S.; Collins, C.; Rushing, J.; Graves, S. J.

2017-12-01

Researchers at the Information Technology and Systems Center at the University of Alabama in Huntsville are using Deep Learning with Convolutional Neural Networks (CNNs) to develop a method for enhancing the spatial resolutions of moderate resolution (10-60m) multispectral satellite imagery. This enhancement will effectively match the resolutions of imagery from multiple sensors to provide increased global temporal-spatial coverage for a variety of Earth science products. Our research is centered on using Deep Learning for automatically generating transformations for increasing the spatial resolution of remotely sensed images with different spatial, spectral, and temporal resolutions. One of the most important steps in using images from multiple sensors is to transform the different image layers into the same spatial resolution, preferably the highest spatial resolution, without compromising the spectral information. Recent advances in Deep Learning have shown that CNNs can be used to effectively and efficiently upscale or enhance the spatial resolution of multispectral images with the use of an auxiliary data source such as a high spatial resolution panchromatic image. In contrast, we are using both the spatial and spectral details inherent in low spatial resolution multispectral images for image enhancement without the use of a panchromatic image. This presentation will discuss how this technology will benefit many Earth Science applications that use remotely sensed images with moderate spatial resolutions.

Vesta and the HED Meteorites: Comparison of Spectral Properties

NASA Technical Reports Server (NTRS)

Ammannito, E.; De Sanctis, M. C.; Fonte, S.; Magni, G.; Capaccioni, F.; Tosi, F.; Capria, M. T.; Blewett, D.; Combe, J. P.; Farina, M.;

The AGORA High-resolution Galaxy Simulations Comparison Project

NASA Astrophysics Data System (ADS)

Kim, Ji-hoon; Abel, Tom; Agertz, Oscar; Bryan, Greg L.; Ceverino, Daniel; Christensen, Charlotte; Conroy, Charlie; Dekel, Avishai; Gnedin, Nickolay Y.; Goldbaum, Nathan J.; Guedes, Javiera; Hahn, Oliver; Hobbs, Alexander; Hopkins, Philip F.; Hummels, Cameron B.; Iannuzzi, Francesca; Keres, Dusan; Klypin, Anatoly; Kravtsov, Andrey V.; Krumholz, Mark R.; Kuhlen, Michael; Leitner, Samuel N.; Madau, Piero; Mayer, Lucio; Moody, Christopher E.; Nagamine, Kentaro; Norman, Michael L.; Onorbe, Jose; O'Shea, Brian W.; Pillepich, Annalisa; Primack, Joel R.; Quinn, Thomas; Read, Justin I.; Robertson, Brant E.; Rocha, Miguel; Rudd, Douglas H.; Shen, Sijing; Smith, Britton D.; Szalay, Alexander S.; Teyssier, Romain; Thompson, Robert; Todoroki, Keita; Turk, Matthew J.; Wadsley, James W.; Wise, John H.; Zolotov, Adi; AGORA Collaboration29,the

2014-01-01

We introduce the Assembling Galaxies Of Resolved Anatomy (AGORA) project, a comprehensive numerical study of well-resolved galaxies within the ΛCDM cosmology. Cosmological hydrodynamic simulations with force resolutions of ~100 proper pc or better will be run with a variety of code platforms to follow the hierarchical growth, star formation history, morphological transformation, and the cycle of baryons in and out of eight galaxies with halo masses M vir ~= 1010, 1011, 1012, and 1013 M ⊙ at z = 0 and two different ("violent" and "quiescent") assembly histories. The numerical techniques and implementations used in this project include the smoothed particle hydrodynamics codes GADGET and GASOLINE, and the adaptive mesh refinement codes ART, ENZO, and RAMSES. The codes share common initial conditions and common astrophysics packages including UV background, metal-dependent radiative cooling, metal and energy yields of supernovae, and stellar initial mass function. These are described in detail in the present paper. Subgrid star formation and feedback prescriptions will be tuned to provide a realistic interstellar and circumgalactic medium using a non-cosmological disk galaxy simulation. Cosmological runs will be systematically compared with each other using a common analysis toolkit and validated against observations to verify that the solutions are robust—i.e., that the astrophysical assumptions are responsible for any success, rather than artifacts of particular implementations. The goals of the AGORA project are, broadly speaking, to raise the realism and predictive power of galaxy simulations and the understanding of the feedback processes that regulate galaxy "metabolism." The initial conditions for the AGORA galaxies as well as simulation outputs at various epochs will be made publicly available to the community. The proof-of-concept dark-matter-only test of the formation of a galactic halo with a z = 0 mass of M vir ~= 1.7 × 1011 M ⊙ by nine different versions of the participating codes is also presented to validate the infrastructure of the project.

Photometric observations and orbital period variations of HS 0705 + 6700 and NY Vir

NASA Astrophysics Data System (ADS)

Çamurdan, C. M.; Zengin Çamurdan, D.; İbanoǧlu, C.

2012-04-01

We present photometric observations of two post-common-envelope stars, NY Vir (=PG 1336-018) and HS 0705 + 6700. The V band CCD observation of NY Vir was performed by a 40 cm telescope at Ege University Observatory and the R band observations of HS 0705 + 6700 were performed by 100 cm telescope at TÜBİTAK National Observatory. The new light curves were analyzed by the WD code and the physical parameters of stars were determined. We obtained new mid-eclipse timings for HS 0705 + 6700 and combined them with those previously published data. The analysis of the O-C residuals yields a period of about 8.06 ± 0.28 yr and an amplitude of 98.5 s for the system HS 0705 + 6700, which is attributed to the third star physically bounded to the evolved eclipsing pair. A mass function of 1.2 × 10 -4 M⊙ for the third star is obtained. The existence of a third star is also confirmed by the light curve analysis, indicating light contribution of about 0.043 at phase 0.25 in R-bandpass of the eclipsing pair. Using mass-luminosity relationship of the low mass stars we estimate a mass of 0.12 M⊙ with an orbital inclination of about 20°. The O-C residuals obtained for the system NY Vir were represented by a downward parabola which indicates orbital period decrease in the system. Using the coefficient of quadratic term we calculate a rate of orbital period decrease of about dP/ dt = -4.09 × 10 -8days yr -1. The period decrease we have measured in NY Vir may be explained by angular momentum loss from the binary system.

Evolutionary Dynamics of Pathoadaptation Revealed by Three Independent Acquisitions of the VirB/D4 Type IV Secretion System in Bartonella

PubMed Central

Harms, Alexander; Segers, Francisca H.I.D.; Quebatte, Maxime; Mistl, Claudia; Manfredi, Pablo; Körner, Jonas; Chomel, Bruno B.; Kosoy, Michael; Maruyama, Soichi; Engel, Philipp

2017-01-01

The α-proteobacterial genus Bartonella comprises a group of ubiquitous mammalian pathogens that are studied as a model for the evolution of bacterial pathogenesis. Vast abundance of two particular phylogenetic lineages of Bartonella had been linked to enhanced host adaptability enabled by lineage-specific acquisition of a VirB/D4 type IV secretion system (T4SS) and parallel evolution of complex effector repertoires. However, the limited availability of genome sequences from one of those lineages as well as other, remote branches of Bartonella has so far hampered comprehensive understanding of how the VirB/D4 T4SS and its effectors called Beps have shaped Bartonella evolution. Here, we report the discovery of a third repertoire of Beps associated with the VirB/D4 T4SS of B. ancashensis, a novel human pathogen that lacks any signs of host adaptability and is only distantly related to the two species-rich lineages encoding a VirB/D4 T4SS. Furthermore, sequencing of ten new Bartonella isolates from under-sampled lineages enabled combined in silico analyses and wet lab experiments that suggest several parallel layers of functional diversification during evolution of the three Bep repertoires from a single ancestral effector. Our analyses show that the Beps of B. ancashensis share many features with the two other repertoires, but may represent a more ancestral state that has not yet unleashed the adaptive potential of such an effector set. We anticipate that the effectors of B. ancashensis will enable future studies to dissect the evolutionary history of Bartonella effectors and help unraveling the evolutionary forces underlying bacterial host adaptation. PMID:28338931

VizieR Online Data Catalog: CaII H&K to CaII IRT echelle spectra (Montes+, 2000)

NASA Astrophysics Data System (ADS)

Montes, D.; Fernandez-Figueroa, M. J.; de Castro, E.; Cornide, M.; Latorre, A.; Sanz-Forcada, J.

2000-11-01

This is the third paper of a series aimed at studying the chromosphere of active binary systems using the information provided for several optical spectroscopic features. High resolution echelle spectra including all the optical chromospheric activity indicators from the CaII H&K to CaII IRT lines are analysed here for 16 systems. The chromospheric contribution in these lines has been determined using the spectral subtraction technique. Very broad wings have been found in the subtracted Hα profile of the very active star HU Vir. These profiles are well matched using a two-component Gaussian fit (narrow and broad) and the broad component can be interpreted as arising from microflaring. Red-shifted absorption features in the Hα line have been detected in several systems and excess emission in the blue wing of FG UMa was also detected. These features indicate that several dynamical processes, or a combination of them, may be involved. Using the EHα/EHβ ratio as a diagnostic we have detected prominence-like extended material viewed off the limb in many stars of the sample, and prominences viewed against the disk at some orbital phases in the dwarfs OU Gem and BF Lyn. The He I D3 line has been detected as an absorption feature in mainly all the giants of the sample. Total filling-in of the He I D3, probably due to microflaring activity, is observed in HU Vir. Self-absorption with red asymmetry is detected in the CaII H&K lines of the giants 12 Cam, FG UMa and BM CVn. All the stars analysed show clear filled-in CaII IRT lines or even notable emission reversal. The small values of the E8542/E8498 ratio we have found indicate CaII IRT emission arises from plage-like regions. Orbital phase modulation of the chromospheric emission has been detected in some systems, in the case of HU Vir evidence of an active longitude area has been found. (5 data files).

Effects of spatial resolution ratio in image fusion

USGS Publications Warehouse

Ling, Y.; Ehlers, M.; Usery, E.L.; Madden, M.

2008-01-01

In image fusion, the spatial resolution ratio can be defined as the ratio between the spatial resolution of the high-resolution panchromatic image and that of the low-resolution multispectral image. This paper attempts to assess the effects of the spatial resolution ratio of the input images on the quality of the fused image. Experimental results indicate that a spatial resolution ratio of 1:10 or higher is desired for optimal multisensor image fusion provided the input panchromatic image is not downsampled to a coarser resolution. Due to the synthetic pixels generated from resampling, the quality of the fused image decreases as the spatial resolution ratio decreases (e.g. from 1:10 to 1:30). However, even with a spatial resolution ratio as small as 1:30, the quality of the fused image is still better than the original multispectral image alone for feature interpretation. In cases where the spatial resolution ratio is too small (e.g. 1:30), to obtain better spectral integrity of the fused image, one may downsample the input high-resolution panchromatic image to a slightly lower resolution before fusing it with the multispectral image.

VirGO: A Visual Browser for the ESO Science Archive Facility

NASA Astrophysics Data System (ADS)

Hatziminaoglou, Evanthia; Chéreau, Fabien

2009-03-01

VirGO is the next generation Visual Browser for the ESO Science Archive Facility (SAF) developed in the Virtual Observatory Project Office. VirGO enables astronomers to discover and select data easily from millions of observations in a visual and intuitive way. It allows real-time access and the graphical display of a large number of observations by showing instrumental footprints and image previews, as well as their selection and filtering for subsequent download from the ESO SAF web interface. It also permits the loading of external FITS files or VOTables, as well as the superposition of Digitized Sky Survey images to be used as background. All data interfaces are based on Virtual Observatory (VO) standards that allow access to images and spectra from external data centres, and interaction with the ESO SAF web interface or any other VO applications.

Calibration pipeline for VIR data

NASA Astrophysics Data System (ADS)

Carraro, F.; Fonte, S.; Coradini, A.; Filacchione, G.; de Sanctis, M. C.; Ammannito, E.; Capria, M. T.; Cartacci, M.; Noschese, R.; Tosi, F.; Capaccioni, F.

2011-10-01

During the second quarter of 2011 VIR-MS (VIS and IR Mapping Spectrometer) [1] aboard Dawn mission [2] has approached Vesta in order to start a long period of acquisitions that will end at the beginning of 2012. Data acquired by each instrument always require a calibration process in order to remove all the instrument effects that could affect the scientific evaluations and analysis. VIR-MS instrument team has realized a calibration pipeline which has the goal of producing calibrated (1b level) data starting from the raw (1a level) ones. The other goal of the tool has been the check of the goodness of acquired data by means of the evaluation of a series of minimum requisites of each data file, such as the percentage of the saturated pixels, the presence of spikes or the mean S/N ratio of each qube.

Evolutionary orbital period change in BH Virginis

NASA Astrophysics Data System (ADS)

Gebrehiwot, Y. M.; Tessema, S. B.; Berdnikov, L. N.

2017-04-01

The study of orbital period change of close binaries, such as BH Virginis (BH Vir), using very long time baseline is vital to understand evolutionary processes of the system. In this paper, we use photometric data to analyze the evolutionary orbital period change of the short period RS CVn-type binary system, BH Vir, with a time baseline spanning 123 years. We used the software version of the Hertzsprung method to describe the O-C curve of the system, and we found that the orbital period secularly decreases at a rate of dp/dt=-(0.0013000 ± 0.0000863) s yr^{-1}. Because BH Vir is a typical detached binary system and both components are late type (G0 V + G2 V) stars, the evolutionary period change could be caused by the angular momentum loss due to tides coupled with magnetic breaking.

Vesta Mineralogy: VIR maps Vesta's surface

NASA Technical Reports Server (NTRS)

Coradina, A.; DeSanctis, M.; Ammannito, E.; Capaccioni, F.; Capria, T.; Carraro, F.; Cartacci, M.; Filacchione, G.; Fonte, S.; Magni, G.;

Distinct activities of Bartonella henselae type IV secretion effector proteins modulate capillary-like sprout formation.

PubMed

Scheidegger, F; Ellner, Y; Guye, P; Rhomberg, T A; Weber, H; Augustin, H G; Dehio, C

2009-07-01

The zoonotic pathogen Bartonella henselae (Bh) can lead to vasoproliferative tumour lesions in the skin and inner organs known as bacillary angiomatosis and bacillary peliosis. The knowledge on the molecular and cellular mechanisms involved in this pathogen-triggered angiogenic process is confined by the lack of a suitable animal model and a physiologically relevant cell culture model of angiogenesis. Here we employed a three-dimensional in vitro angiogenesis assay of collagen gel-embedded endothelial cell (EC) spheroids to study the angiogenic properties of Bh. Spheroids generated from Bh-infected ECs displayed a high capacity to form sprouts, which represent capillary-like projections into the collagen gel. The VirB/VirD4 type IV secretion system and a subset of its translocated Bartonella effector proteins (Beps) were found to profoundly modulate this Bh-induced sprouting activity. BepA, known to protect ECs from apoptosis, strongly promoted sprout formation. In contrast, BepG, triggering cytoskeletal rearrangements, potently inhibited sprouting. Hence, the here established in vitro model of Bartonella- induced angiogenesis revealed distinct and opposing activities of type IV secretion system effector proteins, which together with a VirB/VirD4-independent effect may control the angiogenic activity of Bh during chronic infection of the vasculature.

VirHostNet 2.0: surfing on the web of virus/host molecular interactions data.

PubMed

Guirimand, Thibaut; Delmotte, Stéphane; Navratil, Vincent

2015-01-01

VirHostNet release 2.0 (http://virhostnet.prabi.fr) is a knowledgebase dedicated to the network-based exploration of virus-host protein-protein interactions. Since the previous VirhostNet release (2009), a second run of manual curation was performed to annotate the new torrent of high-throughput protein-protein interactions data from the literature. This resource is shared publicly, in PSI-MI TAB 2.5 format, using a PSICQUIC web service. The new interface of VirHostNet 2.0 is based on Cytoscape web library and provides a user-friendly access to the most complete and accurate resource of virus-virus and virus-host protein-protein interactions as well as their projection onto their corresponding host cell protein interaction networks. We hope that the VirHostNet 2.0 system will facilitate systems biology and gene-centered analysis of infectious diseases and will help to identify new molecular targets for antiviral drugs design. This resource will also continue to help worldwide scientists to improve our knowledge on molecular mechanisms involved in the antiviral response mediated by the cell and in the viral strategies selected by viruses to hijack the host immune system. © The Author(s) 2014. Published by Oxford University Press on behalf of Nucleic Acids Research.

Detection of serpentine in exogenic carbonaceous chondrite material on Vesta from Dawn FC data

NASA Astrophysics Data System (ADS)

Nathues, Andreas; Hoffmann, Martin; Cloutis, Edward A.; Schäfer, Michael; Reddy, Vishnu; Christensen, Ulrich; Sierks, Holger; Thangjam, Guneshwar Singh; Le Corre, Lucille; Mengel, Kurt; Vincent, Jean-Baptist; Russell, Christopher T.; Prettyman, Tom; Schmedemann, Nico; Kneissl, Thomas; Raymond, Carol; Gutierrez-Marques, Pablo; Hall, Ian; Büttner, Irene

2014-09-01

The Dawn mission’s Framing Camera (FC) observed Asteroid (4) Vesta in 2011 and 2012 using seven color filters and one clear filter from different orbits. In the present paper we analyze recalibrated HAMO color cubes (spatial resolution ∼60 m/pixel) with a focus on dark material (DM). We present a definition of highly concentrated DM based on spectral parameters, subsequently map the DM across the Vestan surface, geologically classify DM, study its spectral properties on global and local scales, and finally, compare the FC in-flight color data with laboratory spectra. We have discovered an absorption band centered at 0.72 μm in localities of DM that show the lowest albedo values by using FC data as well as spectral information from Dawn’s imaging spectrometer VIR. Such localities are contained within impact-exposed outcrops on inner crater walls and ejecta material. Comparisons between spectral FC in-flight data, and laboratory spectra of meteorites and mineral mixtures in the wavelength range 0.4-1.0 μm, revealed that the absorption band can be attributed to the mineral serpentine, which is typically present in CM chondrites. Dark material in its purest form is rare on Vesta’s surface and is distributed globally in a non-uniform manner. Our findings confirm the hypothesis of an exogenic origin of the DM by the infall of carbonaceous chondritic material, likely of CM type. It further confirms the hypothesis that most of the DM was deposited by the Veneneia impact.

Photometric Analysis of Eclipsing Binary Az Vir

NASA Astrophysics Data System (ADS)

Neugarten, Andrew; Akiba, Tatsuya; Gokhale, Vayujeet

2018-06-01

We present photometric analysis of the eclipsing binary star system Az Vir. Standard BVR filter data were obtained using the 17-inch PlaneWave Instruments CDK telescope at the Truman State University Observatory in Kirksville, Mo and the 31-inch NURO telescope at the Lowell Observatory complex in Flagstaff, AZ. We apply an eight-term truncated Fourier fit to the light curves generated from these data to confirm the classification of Az Vir as a W Ursae Majoris-type eclipsing variable, using criteria specified by Rucinski (1997). We also calculate the values for the O’Connell Effect Ratio (OER) and the Light Curve Asymmetry (LCA) to quantify the asymmetry in the BVR light curves. In addition, we use data provided by the SuperWASP mission to perform long term O-C (observed minus calculated) analysis on the system to determine if and how its period is changing.

Photometric studies of δ Scuti stars. I. IP Virginis

USGS Publications Warehouse

Joner, Michael D.; Hintz, Eric G.; Collier, Matthew W.

1998-01-01

We report 15 new times of maximum light for the δ Scuti star IP Virginis (formerly known as SA 106‐1024). An analysis of all times of maximum light indicates that IP Vir has been decreasing in period at a constant rate of − days day−1. Evidence is also presented that IP Vir is a double‐mode variable with a period ratio of . This period ratio predicts a [Fe/H] value of −0.3. From photometric (uvbyβ) observations, we find a foreground reddening of .008 mag and a metallicity of [Fe/H] = +0.05. It is shown that [Fe/H] = −0.3 is most likely the correct value. Intrinsic ‐ and c1‐values, plotted in a model atmosphere grid, indicate a mean effective temperature, K, and a mean surface gravity, . All of these physical parameters support Landolt's initial conclusion that IP Vir is an ordinary δ Sct star.

Effect of molecular weight of chitosan on the shelf life and other quality parameters of three different cultivars of Actinidia kolomikta (kiwifruit).

PubMed

Drevinskas, Tomas; Naujokaitytė, Gintarė; Maruška, Audrius; Kaya, Murat; Sargin, Idris; Daubaras, Remigijus; Česonienė, Laima

2017-10-01

The kiwi fruit, Actinidia kolomikta, has valuable properties such as high antioxidant activity, high vitamin C, polyphenols, chlorophylls and organic acids content, but the species are hardly commercialized due to their short shelf life (less than two days). In this study three different cultivars of A. kolomikta (Anykšta, Sentiabrskaya and VIR2) were coated with low, medium and high molecular weight chitosan bio-polymer with the aim to extend the shelf life. The changes in fruit firmness, mass, phenolic compound content, vitamin C content and subjective criteria (withering level, decoloration level and aesthetic appearance) were monitored. It was observed that high molecular weight chitosan had higher positive effect on the shelf life of Sentiabrskaya and Anykšta cultivars than VIR2. Low molecular weight chitosan was found effective on VIR2. Copyright © 2017 Elsevier Ltd. All rights reserved.

Device model for pixelless infrared image up-converters based on polycrystalline graphene heterostructures

NASA Astrophysics Data System (ADS)

Ryzhii, V.; Shur, M. S.; Ryzhii, M.; Karasik, V. E.; Otsuji, T.

2018-01-01

We developed a device model for pixelless converters of far/mid-infrared radiation (FIR/MIR) images into near-infrared/visible (NIR/VIR) images. These converters use polycrystalline graphene layers (PGLs) immersed in the van der Waals materials integrated with a light emitting diode (LED). The PGL serves as an element of the PGL infrared photodetector (PGLIP) sensitive to the incoming FIR/MIR due to the interband absorption. The spatially non-uniform photocurrent generated in the PGLIP repeats (mimics) the non-uniform distribution (image) created by the incident FIR/MIR. The injection of the nonuniform photocurrent into the LED active layer results in the nonuniform NIR/VIR image reproducing the FIR/MIR image. The PGL and the entire layer structure are not deliberately partitioned into pixels. We analyze the characteristics of such pixelless PGLIP-LED up-converters and show that their image contrast transfer function and the up-conversion efficiency depend on the PGL lateral resistivity. The up-converter exhibits high photoconductive gain and conversion efficiency when the lateral resistivity is sufficiently high. Several teams have successfully demonstrated the large area PGLs with the resistivities varying in a wide range. Such layers can be used in the pixelless PGLIP-LED image up-converters. The PGLIP-LED image up-converters can substantially surpass the image up-converters based on the quantum-well infrared photodetector integrated with the LED. These advantages are due to the use of the interband FIR/NIR absorption and a high photoconductive gain in the GLIPs.

DOE Office of Scientific and Technical Information (OSTI.GOV)

Qian, S.-B.; Zhu, L.-Y.; Dai, Z.-B.

We report here the tentative discovery of a Jovian planet in orbit around the rapidly pulsating subdwarf B-type (sdB-type) eclipsing binary NY Vir. By using newly determined eclipse times together with those collected from the literature, we detect that the observed-calculated (O - C) curve of NY Vir shows a small-amplitude cyclic variation with a period of 7.9 yr and a semiamplitude of 6.1 s, while it undergoes a downward parabolic change (revealing a period decrease at a rate of P-dot = -9.2 x 10{sup -12}). The periodic variation was analyzed for the light-travel-time effect via the presence of amore » third body. The mass of the tertiary companion was determined to be M{sub 3}sin i' = 2.3({+-} 0.3)M{sub Jupiter} when a total mass of 0.60 M{sub Sun} for NY Vir is adopted. This suggests that it is most probably a giant circumbinary planet orbiting NY Vir at a distance of about 3.3 astronomical units (AU). Since the rate of period decrease cannot be explained by true angular momentum loss caused by gravitational radiation or/and magnetic braking, the observed downward parabolic change in the O - C diagram may be only a part of a long-period (longer than 15 years) cyclic variation, which may reveal the presence of another Jovian planet ({approx}2.5 M{sub Jupiter}) in the system.« less

Vesta Mineralogy after Dawn Global Observations

NASA Technical Reports Server (NTRS)

ChristinaDeSanctis, Maria; Ammannito, E.; Capaccioni, F.; Cparia, M. T.; Carraro, F.; Fonte, S.; Frigeri, A.; Longobardo, A.; Marchi, S.; Palomba, E.;

Two bodies with high eccentricity around the cataclysmic variable QS Vir

NASA Astrophysics Data System (ADS)

Almeida, Leonardo A.; Jablonski, Francisco

2011-11-01

QS Vir is an eclipsing cataclysmic variable with 3.618 hrs orbital period. This system has the interesting characteristics that it does not show mass transfer between the components through the L1 Lagrangian point and shows a complex orbital period variation history. Qian et al. (2010) associated the orbital period variations to the presence of a giant planet in the system plus angular momentum loss via magnetic braking. Parsons et al. (2010) obtained new eclipse timings and observed that the orbital period variations associated to a hypothetical giant planet disagree with their measurements and concluded that the decrease in orbital period is part of a cyclic variation with period ~16 yrs. In this work, we present 28 new eclipse timings of QS Vir and suggest that the orbital period variations can be explained by a model with two circumbinary bodies. The best fitting gives the lower limit to the masses M1 sin(i) ~ 0.0086 M⊙ and M2 sin(i) ~ 0.054 M⊙ orbital periods P1 ~ 14.4 yrs and P2 ~ 16.99 yrs, and eccentricities e1 ~ 0.62 and e2~0.92 for the two external bodies. Under the assumption of coplanarity among the two external bodies and the inner binary, we obtain a giant planet with ~0.009 M⊙ and a brown dwarf with ~ 0.056 M⊙ around the eclipsing binary QS Vir.

Genererating a core cluster of Fasciola hepatica virulence and immunomodulation-related genes using a comparative in silico approach.

PubMed

Haçarız, Orçun; Sayers, Gearóid P

2018-04-01

A total of 71 virulence and immunomodulation-related transcripts (VIRs) of Fasciola hepatica have been previously proposed (Haçarız et al., 2015). In an attempt to further refine this cohort, an in silico meta analysis approach was carried out using publicly available sequence data of related liver flukes, Clonorchis sinensis and Opisthorchis viverrini. Data of both liver flukes were investigated in terms of sequential homology with data of non-parasitic organisms, pathogens and VIRs of F. hepatica, directional selection (Ka/Ks), and cytokine signaling relation (protein motif based). Some VIRs of F. hepatica [showing homology with immune receptors (for toll/interleukin-1, TGF-β or TNF-α), TGF-β, TNF-α, CD147, or relation with suppressors of cytokine signaling/IKBKE 1 or stimulation of TGF-β (through thrombospondin similarity)] were found to be orthologous with those of both C. sinensis and O. viverrini. The in silico analysis indicates that on the basis of genetic commonality, a total of 30 VIRs of F. hepatica are highlighted as of foremost importance in the parasite evasion strategy, through controlling of host immune system. Findings in this study could be important to further enhance our understanding of the parasitic mechanisms and develop effective control strategies against F. hepatica and other related parasites. Copyright © 2017 Elsevier Ltd. All rights reserved.

Updated O-C Diagrams for Several Bright HW Vir Binaries Observed with the Evryscope

NASA Astrophysics Data System (ADS)

Corcoran, Kyle A.; Barlow, Brad; Corbett, Hank; Fors, Octavi; Howard, Ward S.; Law, Nicholas; Ratzloff, Jeff

2018-01-01

HW Vir systems are eclipsing, post-common-envelope binaries consisting of a hot subdwarf star and a cooler M dwarf or brown dwarf companion. They show a strong reflection effect and have characteristically short orbital periods of only a few hours, allowing observers to detect multiple eclipses per night. Observed minus calculated (O-C) studies allow one to measure miniscule variations in the orbital periods of these systems by comparing observed eclipse timings to a calculated ephemeris. This technique is useful for detecting period changes due to secular evolution of the binary, gravitational wave emission, or reflex motion from an orbiting circumbinary object. Numerous eclipse timings obtained over several years are vital to the proper interpretation and analysis of O-C diagrams. The Evryscope – an array of twenty-four individual telescopes built by UNC and deployed on Cerro Tololo – images the entire Southern sky once every two minutes, producing an insurmountable amount of data for objects brighter than 16th magnitude. The cadence with which Evryscope exposes makes it an unparalleled tool for O-C analyses of HW Vir binaries; it will catalogue thousands of eclipses over the next several years. Here we present updated O-C diagrams for several HW Vir binaries using recent measurements from the Evryscope. We also use observations of AA Dor, an incredibly stable astrophysical clock, to characterize the accuracy of the Evryscope’s timestamps.

Evolutionary Dynamics of Pathoadaptation Revealed by Three Independent Acquisitions of the VirB/D4 Type IV Secretion System in Bartonella.

PubMed

Harms, Alexander; Segers, Francisca H I D; Quebatte, Maxime; Mistl, Claudia; Manfredi, Pablo; Körner, Jonas; Chomel, Bruno B; Kosoy, Michael; Maruyama, Soichi; Engel, Philipp; Dehio, Christoph

2017-03-01

The α-proteobacterial genus Bartonella comprises a group of ubiquitous mammalian pathogens that are studied as a model for the evolution of bacterial pathogenesis. Vast abundance of two particular phylogenetic lineages of Bartonella had been linked to enhanced host adaptability enabled by lineage-specific acquisition of a VirB/D4 type IV secretion system (T4SS) and parallel evolution of complex effector repertoires. However, the limited availability of genome sequences from one of those lineages as well as other, remote branches of Bartonella has so far hampered comprehensive understanding of how the VirB/D4 T4SS and its effectors called Beps have shaped Bartonella evolution. Here, we report the discovery of a third repertoire of Beps associated with the VirB/D4 T4SS of B. ancashensis, a novel human pathogen that lacks any signs of host adaptability and is only distantly related to the two species-rich lineages encoding a VirB/D4 T4SS. Furthermore, sequencing of ten new Bartonella isolates from under-sampled lineages enabled combined in silico analyses and wet lab experiments that suggest several parallel layers of functional diversification during evolution of the three Bep repertoires from a single ancestral effector. Our analyses show that the Beps of B. ancashensis share many features with the two other repertoires, but may represent a more ancestral state that has not yet unleashed the adaptive potential of such an effector set. We anticipate that the effectors of B. ancashensis will enable future studies to dissect the evolutionary history of Bartonella effectors and help unraveling the evolutionary forces underlying bacterial host adaptation. © The Author(s) 2017. Published by Oxford University Press on behalf of the Society for Molecular Biology and Evolution.

Burkholderia mallei and Burkholderia pseudomallei Cluster 1 Type VI Secretion System Gene Expression Is Negatively Regulated by Iron and Zinc

PubMed Central

Burtnick, Mary N.; Brett, Paul J.

2013-01-01

Burkholderia mallei is a facultative intracellular pathogen that causes glanders in humans and animals. Previous studies have demonstrated that the cluster 1 type VI secretion system (T6SS-1) expressed by this organism is essential for virulence in hamsters and is positively regulated by the VirAG two-component system. Recently, we have shown that T6SS-1 gene expression is up-regulated following internalization of this pathogen into phagocytic cells and that this system promotes multinucleated giant cell formation in infected tissue culture monolayers. In the present study, we further investigated the complex regulation of this important virulence factor. To assess T6SS-1 expression, B. mallei strains were cultured in various media conditions and Hcp1 production was analyzed by Western immunoblotting. Transcript levels of several VirAG-regulated genes (bimA, tssA, hcp1 and tssM) were also determined using quantitative real time PCR. Consistent with previous observations, T6SS-1 was not expressed during growth of B. mallei in rich media. Curiously, growth of the organism in minimal media (M9G) or minimal media plus casamino acids (M9CG) facilitated robust expression of T6SS-1 genes whereas growth in minimal media plus tryptone (M9TG) did not. Investigation of this phenomenon confirmed a regulatory role for VirAG in this process. Additionally, T6SS-1 gene expression was significantly down-regulated by the addition of iron and zinc to M9CG. Other genes under the control of VirAG did not appear to be as tightly regulated by these divalent metals. Similar results were observed for B. pseudomallei, but not for B. thailandensis. Collectively, our findings indicate that in addition to being positively regulated by VirAG, B. mallei and B. pseudomallei T6SS-1 gene expression is negatively regulated by iron and zinc. PMID:24146925

Burkholderia mallei and Burkholderia pseudomallei cluster 1 type VI secretion system gene expression is negatively regulated by iron and zinc.

PubMed

Burtnick, Mary N; Brett, Paul J

2013-01-01

Burkholderia mallei is a facultative intracellular pathogen that causes glanders in humans and animals. Previous studies have demonstrated that the cluster 1 type VI secretion system (T6SS-1) expressed by this organism is essential for virulence in hamsters and is positively regulated by the VirAG two-component system. Recently, we have shown that T6SS-1 gene expression is up-regulated following internalization of this pathogen into phagocytic cells and that this system promotes multinucleated giant cell formation in infected tissue culture monolayers. In the present study, we further investigated the complex regulation of this important virulence factor. To assess T6SS-1 expression, B. mallei strains were cultured in various media conditions and Hcp1 production was analyzed by Western immunoblotting. Transcript levels of several VirAG-regulated genes (bimA, tssA, hcp1 and tssM) were also determined using quantitative real time PCR. Consistent with previous observations, T6SS-1 was not expressed during growth of B. mallei in rich media. Curiously, growth of the organism in minimal media (M9G) or minimal media plus casamino acids (M9CG) facilitated robust expression of T6SS-1 genes whereas growth in minimal media plus tryptone (M9TG) did not. Investigation of this phenomenon confirmed a regulatory role for VirAG in this process. Additionally, T6SS-1 gene expression was significantly down-regulated by the addition of iron and zinc to M9CG. Other genes under the control of VirAG did not appear to be as tightly regulated by these divalent metals. Similar results were observed for B. pseudomallei, but not for B. thailandensis. Collectively, our findings indicate that in addition to being positively regulated by VirAG, B. mallei and B. pseudomallei T6SS-1 gene expression is negatively regulated by iron and zinc.

Escape of Actively Secreting Shigella flexneri from ATG8/LC3-Positive Vacuoles Formed during Cell-To-Cell Spread Is Facilitated by IcsB and VirA

PubMed Central

Sachse, Martin; Sansonetti, Philippe J.; Parsot, Claude

2015-01-01

ABSTRACT The enteropathogenic bacterium Shigella flexneri uses a type 3 secretion apparatus (T3SA) to transfer proteins dubbed translocators and effectors inside host cells, inducing bacterial uptake and subsequent lysis of the entry vacuole. Once in the cytoplasm, the outer membrane protein IcsA induces actin polymerization, enabling cytoplasmic movement and cell-to-cell spread of bacteria. During this infectious process, S. flexneri is targeted by ATG8/LC3. The effector IcsB was proposed to inhibit LC3 recruitment by masking a region of IcsA recognized by the autophagy pathway component ATG5. The effector VirA, a GTPase-activating protein (GAP) for Rab1, was also shown to prevent LC3 recruitment. However, the context of LC3 recruitment around S. flexneri is not fully understood. Here, we show that LC3 is recruited specifically around secreting bacteria that are still present in vacuoles formed during entry and cell-to-cell spread. While LC3 recruitment occurs around a small proportion of intracellular wild-type bacteria, the icsB, virA, and icsB virA mutants display incremental defaults in escape from LC3-positive vacuoles formed during cell-to-cell spread. Our results indicate that IcsB and VirA act synergistically to allow bacteria to escape from LC3-positive vacuoles by acting at or in the immediate vicinity of the vacuole membrane(s). We also demonstrate that LC3 is recruited around bacteria still present in the single-membrane entry vacuole, in a manner akin to that seen with LC3-associated phagocytosis. Our results indicate that LC3 recruitment occurs around bacteria still, or already, in membrane compartments formed during entry and cell-to-cell spread, and not around bacteria free in the cytoplasm. PMID:26015503

Investigating the structure and fragmentation of a highly filamentary IRDC

NASA Astrophysics Data System (ADS)

Henshaw, J. D.; Caselli, P.; Fontani, F.; Jiménez-Serra, I.; Tan, J. C.; Longmore, S. N.; Pineda, J. E.; Parker, R. J.; Barnes, A. T.

2016-11-01

We present 3.7 arcsec (˜0.05 pc) resolution 3.2 mm dust continuum observations from the Institut de Radioastronomie Millimétrique Plateau de Bure Interferometer, with the aim of studying the structure and fragmentation of the filamentary infrared dark cloud (IRDC) G035.39-00.33. The continuum emission is segmented into a series of 13 quasi-regularly spaced (λobs ˜ 0.18 pc) cores, following the major axis of the IRDC. We compare the spatial distribution of the cores with that predicted by theoretical work describing the fragmentation of hydrodynamic fluid cylinders, finding a significant (a factor of ≳ 8) discrepancy between the two. Our observations are consistent with the picture emerging from kinematic studies of molecular clouds suggesting that the cores are harboured within a complex network of independent sub-filaments. This result emphasizes the importance of considering the underlying physical structure, and potentially, dynamically important magnetic fields, in any fragmentation analysis. The identified cores exhibit a range in (peak) beam-averaged column density (3.6 × 1023 cm-2 < NH, c < 8.0 × 1023 cm-2), mass (8.1 M⊙ < Mc < 26.1 M⊙), and number density (6.1 × 105 cm-3 < nH, c, eq < 14.7 × 105 cm-3). Two of these cores, dark in the mid-infrared, centrally concentrated, monolithic (with no traceable substructure at our PdBI resolution), and with estimated masses of the order ˜20-25 M⊙, are good candidates for the progenitors of intermediate-to-high-mass stars. Virial parameters span a range 0.2 < αvir < 1.3. Without additional support, possibly from dynamically important magnetic fields with strengths of the order of 230 μG < B < 670 μG, the cores are susceptible to gravitational collapse. These results may imply a multilayered fragmentation process, which incorporates the formation of sub-filaments, embedded cores, and the possibility of further fragmentation.

Restoring the spatial resolution of refocus images on 4D light field

NASA Astrophysics Data System (ADS)

Lim, JaeGuyn; Park, ByungKwan; Kang, JooYoung; Lee, SeongDeok

2010-01-01

This paper presents the method for generating a refocus image with restored spatial resolution on a plenoptic camera, which functions controlling the depth of field after capturing one image unlike a traditional camera. It is generally known that the camera captures 4D light field (angular and spatial information of light) within a limited 2D sensor and results in reducing 2D spatial resolution due to inevitable 2D angular data. That's the reason why a refocus image is composed of a low spatial resolution compared with 2D sensor. However, it has recently been known that angular data contain sub-pixel spatial information such that the spatial resolution of 4D light field can be increased. We exploit the fact for improving the spatial resolution of a refocus image. We have experimentally scrutinized that the spatial information is different according to the depth of objects from a camera. So, from the selection of refocused regions (corresponding depth), we use corresponding pre-estimated sub-pixel spatial information for reconstructing spatial resolution of the regions. Meanwhile other regions maintain out-of-focus. Our experimental results show the effect of this proposed method compared to existing method.

One Year of Observations of Dawn at Ceres: Composition as seen by VIR

NASA Astrophysics Data System (ADS)

De Sanctis, M. Cristina; Ammannito, Eleonora; Ciarniello, Mauro; Raponi, Andrea; Carrozzo, F. Giacomo; Frigeri, Alessandro; Longobardo, Andrea; Palomba, Ernesto; Tosi, Federico; Zambon, Francesca; Fonte, Sergio; Formisano, Michelangelo; Giardino, Marco; Magni, Gianfranco; Capaccioni, Fabrizio; Capria, M. Teresa; Marchi, Simone; Pieters, Carle M.; Ehlmann, Bethany; McCord, Tom

2016-04-01

NASA's Dawn spacecraft [1] arrived at Ceres on March 5, 2015, and has been studying the dwarf planet. The Dawn mission is observing Ceres' surface with its suite of instruments [1] including a Visible and InfraRed Mapping Spectrometer (VIR-MS) [2]. VIR-MS is an imaging spectrometer coupling high spectral and spatial resolution in the VIS (0.25-1-micron) and IR (0.95-5-micron) spectral ranges. Ceres' surface is very dark, but small localized areas exhibit unexpectedly bright materials. Since the first approach data, near infrared spectra revealed a dark surface, with a strong and complex absorption band in the spectral region around 3 microns [3]. Near-infrared spectroscopic analyses confirmed previous observation of bands at 3.1, 3.3-3.5, 3.9 micron but have clearly identified a band at 2.72 micron. This characteristic narrow feature is distinctive for OH-bearing minerals, while H2O-bearing phases, show a much broader absorption band that is a poor match for the Ceres spectrum. Water ice does not fit the observed spectrum. The 3.05-3.1 μm band is also visible in Ceres' ground-based spectra, and has been previously attributed to different phases including water ice, hydrated or NH4-bearing clays and brucite [4,5,6]. We find here that the best fit is obtained with ammoniated phyllosilicate added to a dark material (likely magnetite), antigorite and carbonate [7]. These different components, including ammoniated phases, occur everywhere across the surface although with different relative abundances [8]. Particularly interesting are the bright materials present in some craters like Occator, Haulani and Oxo that show different proportions of the components of the mixture [8]. However, the distribution of the band depths are not always linked to morphological structures. The retrieved mineralogy and composition indicates pervasive aqueous alteration of the surface, processes that are expected to be favored on large bodies like Ceres [9]. Furthermore, Ceres' low density and the presence of OH-bearing minerals, suggests a high content of water inside the body, consistent with extensive differentiation and hydrothermal activity, and possibly even a present-day liquid subsurface layer [10]. However, we note that large amounts of water ice are unlikely on the surface due to the instability of this phase at Ceres' surface temperatures [11]. On the other hand, the presence of ammoniated clays (ammonia ice is extremely volatile) together with the low density, may indicate that Ceres retained more volatiles than objects represented in the meteorite collection, or that it accreted from more volatile-rich material typical of the outer solar system [3]. References: 1] Russell, C.T. et al., Science, 336, 684, 2012. [2]De Sanctis M.C. et al., SSR, doi: I 10.1007/s11214-010-9668-5 , 2010. [3]De Sanctis M.C. et al., Nature, 2015, doi:10.1038/nature16172. [4] Lebofsky et al.,, Icarus 48, 453-459. 1981. [5] King, T.V.V. et al., Science 255, 1551-1553, 1992. [6] Rivkin, A.S. et al., , Icarus 185, 563-567, 2006. [7] Raponi A. et al., LPSC 2016. [8] Ammannito E. et al., LPSC2016. [9] McSween et al., LPSC 2016. [10] Neveu M., Desch S. J., Geophys. R. Lett., 2015. [11] Formisano M. et al., MNRAS, 2015..

The Small Bodies Imager Browser --- finding asteroid and comet images without pain

NASA Astrophysics Data System (ADS)

Palmer, E.; Sykes, M.; Davis, D.; Neese, C.

2014-07-01

To facilitate accessing and downloading spatially resolved imagery of asteroids and comets in the NASA Planetary Data System (PDS), we have created the Small Bodies Image Browser. It is a HTML5 webpage that runs inside a standard web browser needing no installation (http://sbn.psi.edu/sbib/). The volume of data returned by spacecraft missions has grown substantially over the last decade. While this wealth of data provides scientists with ample support for research, it has greatly increased the difficulty of managing, accessing and processing these data. Further, the complexity necessary for a long-term archive results in an architecture that is efficient for computers, but not user friendly. The Small Bodies Image Browser (SBIB) is tied into the PDS archive of the Small Bodies Asteroid Subnode hosted at the Planetary Science Institute [1]. Currently, the tool contains the entire repository of the Dawn mission's encounter with Vesta [2], and we will be adding other datasets in the future. For Vesta, this includes both the level 1A and 1B images for the Framing Camera (FC) and the level 1B spectral cubes from the Visual and Infrared (VIR) spectrometer, providing over 30,000 individual images. A key strength of the tool is providing quick and easy access of these data. The tool allows for searches based on clicking on a map or typing in coordinates. The SBIB can show an entire mission phase (such as cycle 7 of the Low Altitude Mapping Orbit) and the associated footprints, as well as search by image name. It can focus the search by mission phase, resolution or instrument. Imagery archived in the PDS are generally provided by missions in a single or narrow range of formats. To enhance the value and usability of this data to researchers, SBIB makes these available in these original formats as well as PNG, JPEG and ArcGIS compatible ISIS cubes [3]. Additionally, we provide header files for the VIR cubes so they can be read into ENVI without additional processing. Finally, we also provide both camera-based and map-projected products with geometric data embedded for use within ArcGIS and ISIS. We use the Gaskell shape model for terrain projections [4]. There are several other outstanding data analysis tools that have access to asteroid and comet data: JAsteroid (a derivative of JMARS [5]) and the Applied Physics Laboratory's Small Body Mapping Tool [6]. The SBIB has specifically focused on providing data in the easiest manner possible rather than trying to be an analytical tool.

High Spatial Resolution Commercial Satellite Imaging Product Characterization

NASA Technical Reports Server (NTRS)

Ryan, Robert E.; Pagnutti, Mary; Blonski, Slawomir; Ross, Kenton W.; Stnaley, Thomas

2005-01-01

NASA Stennis Space Center's Remote Sensing group has been characterizing privately owned high spatial resolution multispectral imaging systems, such as IKONOS, QuickBird, and OrbView-3. Natural and man made targets were used for spatial resolution, radiometric, and geopositional characterizations. Higher spatial resolution also presents significant adjacency effects for accurate reliable radiometry.

Automated Verification of Spatial Resolution in Remotely Sensed Imagery

NASA Technical Reports Server (NTRS)

Davis, Bruce; Ryan, Robert; Holekamp, Kara; Vaughn, Ronald

2011-01-01

Image spatial resolution characteristics can vary widely among sources. In the case of aerial-based imaging systems, the image spatial resolution characteristics can even vary between acquisitions. In these systems, aircraft altitude, speed, and sensor look angle all affect image spatial resolution. Image spatial resolution needs to be verified with estimators that include the ground sample distance (GSD), the modulation transfer function (MTF), and the relative edge response (RER), all of which are key components of image quality, along with signal-to-noise ratio (SNR) and dynamic range. Knowledge of spatial resolution parameters is important to determine if features of interest are distinguishable in imagery or associated products, and to develop image restoration algorithms. An automated Spatial Resolution Verification Tool (SRVT) was developed to rapidly determine the spatial resolution characteristics of remotely sensed aerial and satellite imagery. Most current methods for assessing spatial resolution characteristics of imagery rely on pre-deployed engineered targets and are performed only at selected times within preselected scenes. The SRVT addresses these insufficiencies by finding uniform, high-contrast edges from urban scenes and then using these edges to determine standard estimators of spatial resolution, such as the MTF and the RER. The SRVT was developed using the MATLAB programming language and environment. This automated software algorithm assesses every image in an acquired data set, using edges found within each image, and in many cases eliminating the need for dedicated edge targets. The SRVT automatically identifies high-contrast, uniform edges and calculates the MTF and RER of each image, and when possible, within sections of an image, so that the variation of spatial resolution characteristics across the image can be analyzed. The automated algorithm is capable of quickly verifying the spatial resolution quality of all images within a data set, enabling the appropriate use of those images in a number of applications.

Resolution Enhancement of Hyperion Hyperspectral Data using Ikonos Multispectral Data

DTIC Science & Technology

2007-09-01

spatial - resolution hyperspectral image to produce a sharpened product. The result is a product that has the spectral properties of the ...multispectral sensors. In this work, we examine the benefits of combining data from high- spatial - resolution , low- spectral - resolution spectral imaging...sensors with data obtained from high- spectral - resolution , low- spatial - resolution spectral imaging sensors.

Thematic and spatial resolutions affect model-based predictions of tree species distribution.

PubMed

Liang, Yu; He, Hong S; Fraser, Jacob S; Wu, ZhiWei

2013-01-01

Subjective decisions of thematic and spatial resolutions in characterizing environmental heterogeneity may affect the characterizations of spatial pattern and the simulation of occurrence and rate of ecological processes, and in turn, model-based tree species distribution. Thus, this study quantified the importance of thematic and spatial resolutions, and their interaction in predictions of tree species distribution (quantified by species abundance). We investigated how model-predicted species abundances changed and whether tree species with different ecological traits (e.g., seed dispersal distance, competitive capacity) had different responses to varying thematic and spatial resolutions. We used the LANDIS forest landscape model to predict tree species distribution at the landscape scale and designed a series of scenarios with different thematic (different numbers of land types) and spatial resolutions combinations, and then statistically examined the differences of species abundance among these scenarios. Results showed that both thematic and spatial resolutions affected model-based predictions of species distribution, but thematic resolution had a greater effect. Species ecological traits affected the predictions. For species with moderate dispersal distance and relatively abundant seed sources, predicted abundance increased as thematic resolution increased. However, for species with long seeding distance or high shade tolerance, thematic resolution had an inverse effect on predicted abundance. When seed sources and dispersal distance were not limiting, the predicted species abundance increased with spatial resolution and vice versa. Results from this study may provide insights into the choice of thematic and spatial resolutions for model-based predictions of tree species distribution.

Thematic and Spatial Resolutions Affect Model-Based Predictions of Tree Species Distribution

PubMed Central

Liang, Yu; He, Hong S.; Fraser, Jacob S.; Wu, ZhiWei

2013-01-01

Subjective decisions of thematic and spatial resolutions in characterizing environmental heterogeneity may affect the characterizations of spatial pattern and the simulation of occurrence and rate of ecological processes, and in turn, model-based tree species distribution. Thus, this study quantified the importance of thematic and spatial resolutions, and their interaction in predictions of tree species distribution (quantified by species abundance). We investigated how model-predicted species abundances changed and whether tree species with different ecological traits (e.g., seed dispersal distance, competitive capacity) had different responses to varying thematic and spatial resolutions. We used the LANDIS forest landscape model to predict tree species distribution at the landscape scale and designed a series of scenarios with different thematic (different numbers of land types) and spatial resolutions combinations, and then statistically examined the differences of species abundance among these scenarios. Results showed that both thematic and spatial resolutions affected model-based predictions of species distribution, but thematic resolution had a greater effect. Species ecological traits affected the predictions. For species with moderate dispersal distance and relatively abundant seed sources, predicted abundance increased as thematic resolution increased. However, for species with long seeding distance or high shade tolerance, thematic resolution had an inverse effect on predicted abundance. When seed sources and dispersal distance were not limiting, the predicted species abundance increased with spatial resolution and vice versa. Results from this study may provide insights into the choice of thematic and spatial resolutions for model-based predictions of tree species distribution. PMID:23861828

Modeling the Effects of Asynchronous Rotation on Secondary Eclipse Timings in HW VIr Binaries

NASA Astrophysics Data System (ADS)

Clancy, Padraig

2018-01-01

HW Vir binaries are post common envelope binaries consisting of a hot subdwarf and red dwarf, with light curves dominated by primary eclipses, a strong reflection effect, and secondary eclipses. They have orbital periods ranging from a few hours to half a day and are generally thought to be tidally locked; most studies assume both synchronous rotation and zero eccentricity when modeling HW Vir light curves and radial velocities. Their stable eclipse timings are frequently used in O-C studies to look for the presence of circumbinary objects, measure evolutionary changes in the orbital period, and even constrain the component masses through Roemer delay measurements of the secondary eclipse. While most systems are probably tidally locked or close to it, even slightly asynchronous rotation could theoretically shift the orbital phase of the reflection effect. Here we investigate how asynchronous rotation might affect measurements of secondary eclipse timings by generating thousands of synthetic light curves with a range of reflection effect phases, fitting eclipse timings, and creating O-C diagrams.

Retrieved Products from Simulated Hyperspectral Observations of a Hurricane

NASA Technical Reports Server (NTRS)

Susskind, Joel; Kouvaris, Louis; Iredell, Lena; Blaisdell, John

2015-01-01

Demonstrate via Observing System Simulation Experiments (OSSEs) the potential utility of flying high spatial resolution AIRS class IR sounders on future LEO and GEO missions.The study simulates and analyzes radiances for 3 sounders with AIRS spectral and radiometric properties on different orbits with different spatial resolutions: 1) Control run 13 kilometers AIRS spatial resolution at nadir on LEO in Aqua orbit; 2) 2 kilometer spatial resolution LEO sounder at nadir ARIES; 3) 5 kilometers spatial resolution sounder on a GEO orbit, radiances simulated every 72 minutes.

Reflectance properties and hydrated material distribution on Vesta: Global investigation of variations and their relationship using improved calibration of Dawn VIR mapping spectrometer

NASA Astrophysics Data System (ADS)

Combe, Jean-Philippe; Ammannito, Eleonora; Tosi, Federico; De Sanctis, Maria Cristina; McCord, Thomas B.; Raymond, Carol A.; Russell, Christopher T.

2015-10-01

Vesta's surface albedo variations and hydrated material content share similar spatial distribution. This observation is consistent with carbonaceous chondrite meteorites as a likely source material for dark surface units observed by the Dawn spacecraft, as presented by numerous publications. While these deposits have been studied extensively by analysis of data from the Framing Camera (FC) and the Visible and Infrared Spectrometer (VIR), we performed a new analysis based on an improved calibration of VIR. First we identified instrument and calibration artifacts, and we therefore developed corrections of the VIR flat field and response function. Then we developed a photometric correction for Vesta based on the lunar model by Shkuratov et al. (Shkuratov, Yu.G. et al. [1999]. Icarus 141, 132-155. http://dx.doi.org/10.1006/icar.1999.6154), and a semi-analytical inversion of the photometric parameters. This photometric model combines minimization of the scattering effects due to the topography (a disk function) and variations of multiple-scattering with phase angle (the phase function) caused by microscopic physical properties of the regolith. The improved calibration and photometric correction enable more accurate analysis of the spectral properties of Vesta's surface material, especially the reflectance at 1.4 μm and the 2.8 μm hydroxyl absorption band depth. We produced global and quadrangle maps that are used as a common dataset for this Icarus special issue on Vesta's surface composition. The joint interpretation of both the 1.4 μm reflectance and the 2.8 μm absorption band depth reveals unusual spectral properties for a number of impact craters and ejecta compared to the rest of Vesta. An area including the Bellicia, Arruntia and Pomponia craters, where olivine might be present, has relatively high reflectance and a strong hydroxyl absorption band. Another area in the vicinity of Capparonia crater has a high content of hydrated materials, although with moderate reflectance and typical pyroxene-rich composition. Ejecta blankets west of Oppia crater have a spectral behavior similar to Capparonia, except for the wider and more complex shape of the hydroxyl absorption band. On the other hand, some low-hydrated areas associated to crater floors and ejecta have higher reflectance and steeper spectral slope than most low-hydrated terrains Vesta. A broad lane that extends from Rheasilvia rim at Matronalia Rupes to the northern regions hosts little to no hydrated materials and exhibits a moderate spectral slope, similar to Rheasilvia's basin floor. These properties reinforce the hypothesis that the lane is composed of ejecta from Rheasilvia, as indicated by the distribution of pyroxene compositions by previous results from Dawn. A few small and fresh craters exhibit an association between low-reflectance, little to no hydrated materials and a strong positive spectral slope, suggesting optical effects by opaque coatings, as opposed to carbonaceous chondrite deposits, and possible coarser grains.

Top-of-Atmosphere Direct Radiative Effect of Aerosols from the Clouds and the Earth's Radiant Energy System Satellite Instrument (CERES)

NASA Technical Reports Server (NTRS)

Loeb, N. G.; Kato, S.

2002-01-01

Nine months of CERES/TRMM broadband fluxes combined with VIRS high-resolution imager measurements are used to estimate the daily average direct radiative effect of aerosols for clear-sky conditions over the tropical oceans. On average, aerosols have a cooling effect over the tropics of 4.6 +/- 1 W/sq m. The magnitude is approx.2 W/sq m smaller over the southern tropical oceans than it is over northern tropical oceans. The direct effect derived from CERES is highly correlated with coincident aerosol optical depth retrievals inferred from 0.63 microns VIRS radiances (correlation coefficient of 0.96). The slope of the regression line is approx. -32 W/sq m/t over the equatorial Pacific Ocean, but changes both regionally and seasonally, depending on the aerosol characteristics. Near sources of biomass burning and desert dust, the aerosol direct effect reaches -25 W sq m to -30 W/sq m. The direct effect from CERES also shows a dependence on wind speed. The reason for this dependence is unclear-it may be due to increased aerosol (e.g. sea-salt or aerosol transport) or increased surface reflection (e.g. due to whitecaps). The uncertainty in the tropical average direct effect from CERES is approx. 1 W/sq m (approx. 20%) due mainly to cloud contamination, the radiance-to-flux conversion, and instrument calibration. By comparison, uncertainties in the direct effect from the ERBE and CERES "ERBE-Like" products are a factor of 3 to 5 larger.

Molecular characterization and evaluation of the emerging antibiotic-resistant Streptococcus pyogenes from eastern India.

PubMed

Ray, Dipanwita; Saha, Somnath; Sinha, Sukanta; Pal, Nishith Kumar; Bhattacharya, Basudev

2016-12-12

Group A Streptococcus strains causing wide variety of diseases, recently became noticeable in eastern India, are not amenable to standard treatment protocol thus enhancing the possibility of disease morbidity by becoming antibiotic resistance. The association of Lancefield group A Streptococcal variation with degree of vir architectural diversity was evaluated using emm typing and restriction fragment length polymorphism analyses. The antibiotic sensitivity patterns were examined by modified Kirby-Bauer method of disk diffusion. Percentage calculations, 95% confidence interval and one-way ANOVA were used to assess differences in proportions. Our observations revealed 20 different emm types and 13 different HaeIII vir typing patterns. A 1.2 kb fragment was found in all HaeIII typing pattern. Fragments of 1.2 kb and 550 bp were conserved in majority of the isolates. HinfI digestion was found proficient in differentiating the strains of same vir typing patterns. Strong predominance of speC (85%) and speF (80%) genes have been observed encoding exotoxins production. 4 isolates were found to be erythromycin resistant and were of genotype emm49. High degree of tetracycline resistance was shown by 53.57% isolates which belonged to 12 different emm genotypes. These findings suggested that in addition to emm typing, sequential application of HaeIII and HinfI restriction enzymes in vir typing analysis is an effective tool for group A streptococcal molecular characterization associated with antibiotic resistance.

[Experimental study of angiography using vascular interventional robot-2(VIR-2)].

PubMed

Tian, Zeng-min; Lu, Wang-sheng; Liu, Da; Wang, Da-ming; Guo, Shu-xiang; Xu, Wu-yi; Jia, Bo; Zhao, De-peng; Liu, Bo; Gao, Bao-feng

2012-06-01

To verify the feasibility and safety of new vascular interventional robot system used in vascular interventional procedures. Vascular interventional robot type-2 (VIR-2) included master-slave parts of body propulsion system, image navigation systems and force feedback system, the catheter movement could achieve under automatic control and navigation, force feedback was integrated real-time, followed by in vitro pre-test in vascular model and cerebral angiography in dog. Surgeon controlled vascular interventional robot remotely, the catheter was inserted into the intended target, the catheter positioning error and the operation time would be evaluated. In vitro pre-test and animal experiment went well; the catheter can enter any branch of vascular. Catheter positioning error was less than 1 mm. The angiography operation in animal was carried out smoothly without complication; the success rate of the operation was 100% and the entire experiment took 26 and 30 minutes, efficiency was slightly improved compared with the VIR-1, and the time what staff exposed to the DSA machine was 0 minute. The resistance of force sensor can be displayed to the operator to provide a security guarantee for the operation. No surgical complications. VIR-2 is safe and feasible, and can achieve the catheter remote operation and angiography; the master-slave system meets the characteristics of traditional procedure. The three-dimensional image can guide the operation more smoothly; force feedback device provides remote real-time haptic information to provide security for the operation.

Detector motion method to increase spatial resolution in photon-counting detectors

NASA Astrophysics Data System (ADS)

Lee, Daehee; Park, Kyeongjin; Lim, Kyung Taek; Cho, Gyuseong

2017-03-01

Medical imaging requires high spatial resolution of an image to identify fine lesions. Photon-counting detectors in medical imaging have recently been rapidly replacing energy-integrating detectors due to the former`s high spatial resolution, high efficiency and low noise. Spatial resolution in a photon counting image is determined by the pixel size. Therefore, the smaller the pixel size, the higher the spatial resolution that can be obtained in an image. However, detector redesigning is required to reduce pixel size, and an expensive fine process is required to integrate a signal processing unit with reduced pixel size. Furthermore, as the pixel size decreases, charge sharing severely deteriorates spatial resolution. To increase spatial resolution, we propose a detector motion method using a large pixel detector that is less affected by charge sharing. To verify the proposed method, we utilized a UNO-XRI photon-counting detector (1-mm CdTe, Timepix chip) at the maximum X-ray tube voltage of 80 kVp. A similar spatial resolution of a 55- μm-pixel image was achieved by application of the proposed method to a 110- μm-pixel detector with a higher signal-to-noise ratio. The proposed method could be a way to increase spatial resolution without a pixel redesign when pixels severely suffer from charge sharing as pixel size is reduced.

The Effect of Remote Sensor Spatial Resolution in Monitoring U.S. Army Training Maneuver Sites

DTIC Science & Technology

1990-12-01

THE EFFECT OF REMOTE SENSOR SPATIAL RESOLUTION IN MONITORING U.S. ARMY...Multispectral Scanner with 6.5 meter spatial resolution provided the most effective digital data set for enhancing tank trails. However, this Airborne Scanner...primary objective of this research was to determine the capabilities and limitations of remote sensor systems having different spatial resolutions to

Cloud Macro- and Microphysical Properties Derived from GOES over the ARM SGP Domain

NASA Technical Reports Server (NTRS)

Minnis, P.; Smith, W. L., Jr.; Young, D. F.

2001-01-01

Cloud macrophysical properties like fractional coverage and height Z(sub c) and microphysical parameters such as cloud liquid water path (LWP), effective droplet radius r(sub e), and cloud phase, are key factors affecting both the radiation budget and the hydrological cycle. Satellite data have been used to complement surface observations from Atmospheric Radiation Measurements (ARM) by providing additional spatial coverage and top-of-atmosphere boundary conditions of these key parameters. Since 1994, the Geostationary Operational Environmental Satellite (GOES) has been used for deriving at each half-hour over the ARM Southern Great Plains (SGP) domain: cloud amounts, altitudes, temperatures, and optical depths as well as broadband shortwave (SW) albedo and outgoing longwave radiation at the top of the atmosphere. A new operational algorithm has been implemented to increase the number of value-added products to include cloud particle phase and effective size (r(sub e) or effective ice diameter D(sub e)) as well as LWP and ice water path. Similar analyses have been performed on the data from the Visible Infrared Scanner (VIRS) on the Tropical Rainfall Measuring Mission satellite as part of the Clouds and Earth's Radiant Energy System project. This larger suite of cloud properties will enhance our knowledge of cloud processes and further constrain the mesoscale and single column models using ARM data as a validation/initialization resource. This paper presents the results of applying this new algorithm to GOES-8 data taken during 1998 and 2000. The global VIRS results are compared to the GOES SGP results to provide appropriate context and to test consistency.

DOE Office of Scientific and Technical Information (OSTI.GOV)

Takir, D.; Reddy, V.; Sanchez, J. A.

Phase angle-induced spectral effects are important to characterize since they affect spectral band parameters such as band depth and band center, and therefore skew mineralogical interpretations of planetary bodies via reflectance spectroscopy. Dwarf planet (1) Ceres is the next target of NASA’s Dawn mission, which is expected to arrive in 2015 March. The visible and near-infrared mapping spectrometer (VIR) on board Dawn has the spatial and spectral range to characterize the surface between 0.25–5.0 μm. Ceres has an absorption feature at 3.0 μm due to hydroxyl- and/or water-bearing minerals. We analyzed phase angle-induced spectral effects on the 3 μm absorptionmore » band on Ceres using spectra measured with the long-wavelength cross-dispersed (LXD: 1.9–4.2 μm) mode of the SpeX spectrograph/imager at the NASA Infrared Telescope Facility. Ceres LXD spectra were measured at different phase angles ranging from 0.°7 to 22°. We found that the band center slightly increases from 3.06 μm at lower phase angles (0.°7 and 6°) to 3.07 μm at higher phase angles (11° and 22°), the band depth decreases by ∼20% from lower phase angles to higher phase angles, and the band area decreases by ∼25% from lower phase angles to higher phase angles. Our results will have implications for constraining the abundance of OH on the surface of Ceres from VIR spectral data, which will be acquired by Dawn starting spring 2015.« less

The effects of transient attention on spatial resolution and the size of the attentional cue.

PubMed

Yeshurun, Yaffa; Carrasco, Marisa

2008-01-01

It has been shown that transient attention enhances spatial resolution, but is the effect of transient attention on spatial resolution modulated by the size of the attentional cue? Would a gradual increase in the size of the cue lead to a gradual decrement in spatial resolution? To test these hypotheses, we used a texture segmentation task in which performance depends on spatial resolution, and systematically manipulated the size of the attentional cue: A bar of different lengths (Experiment 1) or a frame of different sizes (Experiments 2-3) indicated the target region in a texture segmentation display. Observers indicated whether a target patch region (oriented line elements in a background of an orthogonal orientation), appearing at a range of eccentricities, was present in the first or the second interval. We replicated the attentional enhancement of spatial resolution found with small cues; attention improved performance at peripheral locations but impaired performance at central locations. However, there was no evidence of gradual resolution decrement with large cues. Transient attention enhanced spatial resolution at the attended location when it was attracted to that location by a small cue but did not affect resolution when it was attracted by a large cue. These results indicate that transient attention cannot adapt its operation on spatial resolution on the basis of the size of the attentional cue.

Selecting a spatial resolution for estimation of per-field green leaf area index

NASA Technical Reports Server (NTRS)

Curran, Paul J.; Williamson, H. Dawn

1988-01-01

For any application of multispectral scanner (MSS) data, a user is faced with a number of choices concerning the characteristics of the data; one of these is their spatial resolution. A pilot study was undertaken to determine the spatial resolution that would be optimal for the per-field estimation of green leaf area index (GLAI) in grassland. By reference to empirically-derived data from three areas of grassland, the suitable spatial resolution was hypothesized to lie in the lower portion of a 2-18 m range. To estimate per-field GLAI, airborne MSS data were collected at spatial resolutions of 2 m, 5 m and 10 m. The highest accuracies of per-field GLAI estimation were achieved using MSS data with spatial resolutions of 2 m and 5 m.

Forest Classification Accuracy as Influenced by Multispectral Scanner Spatial Resolution. [Sam Houston National Forest, Texas

NASA Technical Reports Server (NTRS)

Nalepka, R. F. (Principal Investigator); Sadowski, F. E.; Sarno, J. E.

1976-01-01

The author has identified the following significant results. A supervised classification within two separate ground areas of the Sam Houston National Forest was carried out for two sq meters spatial resolution MSS data. Data were progressively coarsened to simulate five additional cases of spatial resolution ranging up to 64 sq meters. Similar processing and analysis of all spatial resolutions enabled evaluations of the effect of spatial resolution on classification accuracy for various levels of detail and the effects on area proportion estimation for very general forest features. For very coarse resolutions, a subset of spectral channels which simulated the proposed thematic mapper channels was used to study classification accuracy.

High Resolution Mesoscale Weather Data Improvement to Spatial Effects for Dose-Rate Contour Plot Predictions

DTIC Science & Technology

2007-03-01

time. This is a very powerful tool in determining fine spatial resolution , as boundary conditions are not only updated at every timestep, but the ...HIGH RESOLUTION MESOSCALE WEATHER DATA IMPROVEMENT TO SPATIAL EFFECTS FOR DOSE-RATE CONTOUR PLOT PREDICTIONS THESIS Christopher P...11 1 HIGH RESOLUTION MESOSCALE WEATHER DATA IMPROVEMENT TO SPATIAL EFFECTS FOR DOSE-RATE CONTOUR PLOT

Impact of the spatial resolution of satellite remote sensing sensors in the quantification of total suspended sediment concentration: A case study in turbid waters of Northern Western Australia.

PubMed

Dorji, Passang; Fearns, Peter

2017-01-01

The impact of anthropogenic activities on coastal waters is a cause of concern because such activities add to the total suspended sediment (TSS) budget of the coastal waters, which have negative impacts on the coastal ecosystem. Satellite remote sensing provides a powerful tool in monitoring TSS concentration at high spatiotemporal resolution, but coastal managers should be mindful that the satellite-derived TSS concentrations are dependent on the satellite sensor's radiometric properties, atmospheric correction approaches, the spatial resolution and the limitations of specific TSS algorithms. In this study, we investigated the impact of different spatial resolutions of satellite sensor on the quantification of TSS concentration in coastal waters of northern Western Australia. We quantified the TSS product derived from MODerate resolution Imaging Spectroradiometer (MODIS)-Aqua, Landsat-8 Operational Land Image (OLI), and WorldView-2 (WV2) at native spatial resolutions of 250 m, 30 m and 2 m respectively and coarser spatial resolution (resampled up to 5 km) to quantify the impact of spatial resolution on the derived TSS product in different turbidity conditions. The results from the study show that in the waters of high turbidity and high spatial variability, the high spatial resolution WV2 sensor reported TSS concentration as high as 160 mg L-1 while the low spatial resolution MODIS-Aqua reported a maximum TSS concentration of 23.6 mg L-1. Degrading the spatial resolution of each satellite sensor for highly spatially variable turbid waters led to variability in the TSS concentrations of 114.46%, 304.68% and 38.2% for WV2, Landsat-8 OLI and MODIS-Aqua respectively. The implications of this work are particularly relevant in the situation of compliance monitoring where operations may be required to restrict TSS concentrations to a pre-defined limit.

Impact of the spatial resolution of satellite remote sensing sensors in the quantification of total suspended sediment concentration: A case study in turbid waters of Northern Western Australia

PubMed Central

Fearns, Peter

2017-01-01

The impact of anthropogenic activities on coastal waters is a cause of concern because such activities add to the total suspended sediment (TSS) budget of the coastal waters, which have negative impacts on the coastal ecosystem. Satellite remote sensing provides a powerful tool in monitoring TSS concentration at high spatiotemporal resolution, but coastal managers should be mindful that the satellite-derived TSS concentrations are dependent on the satellite sensor’s radiometric properties, atmospheric correction approaches, the spatial resolution and the limitations of specific TSS algorithms. In this study, we investigated the impact of different spatial resolutions of satellite sensor on the quantification of TSS concentration in coastal waters of northern Western Australia. We quantified the TSS product derived from MODerate resolution Imaging Spectroradiometer (MODIS)-Aqua, Landsat-8 Operational Land Image (OLI), and WorldView-2 (WV2) at native spatial resolutions of 250 m, 30 m and 2 m respectively and coarser spatial resolution (resampled up to 5 km) to quantify the impact of spatial resolution on the derived TSS product in different turbidity conditions. The results from the study show that in the waters of high turbidity and high spatial variability, the high spatial resolution WV2 sensor reported TSS concentration as high as 160 mg L-1 while the low spatial resolution MODIS-Aqua reported a maximum TSS concentration of 23.6 mg L-1. Degrading the spatial resolution of each satellite sensor for highly spatially variable turbid waters led to variability in the TSS concentrations of 114.46%, 304.68% and 38.2% for WV2, Landsat-8 OLI and MODIS-Aqua respectively. The implications of this work are particularly relevant in the situation of compliance monitoring where operations may be required to restrict TSS concentrations to a pre-defined limit. PMID:28380059

Attention Modifies Spatial Resolution According to Task Demands.

PubMed

Barbot, Antoine; Carrasco, Marisa

2017-03-01

How does visual attention affect spatial resolution? In texture-segmentation tasks, exogenous (involuntary) attention automatically increases resolution at the attended location, which improves performance where resolution is too low (at the periphery) but impairs performance where resolution is already too high (at central locations). Conversely, endogenous (voluntary) attention improves performance at all eccentricities, which suggests a more flexible mechanism. Here, using selective adaptation to spatial frequency, we investigated the mechanism by which endogenous attention benefits performance in resolution tasks. Participants detected a texture target that could appear at several eccentricities. Adapting to high or low spatial frequencies selectively affected performance in a manner consistent with changes in resolution. Moreover, adapting to high, but not low, frequencies mitigated the attentional benefit at central locations where resolution was too high; this shows that attention can improve performance by decreasing resolution. Altogether, our results indicate that endogenous attention benefits performance by modulating the contribution of high-frequency information in order to flexibly adjust spatial resolution according to task demands.

Attention Modifies Spatial Resolution According to Task Demands

PubMed Central

Barbot, Antoine; Carrasco, Marisa

2017-01-01

How does visual attention affect spatial resolution? In texture-segmentation tasks, exogenous (involuntary) attention automatically increases resolution at the attended location, which improves performance where resolution is too low (at the periphery) but impairs performance where resolution is already too high (at central locations). Conversely, endogenous (voluntary) attention improves performance at all eccentricities, which suggests a more flexible mechanism. Here, using selective adaptation to spatial frequency, we investigated the mechanism by which endogenous attention benefits performance in resolution tasks. Participants detected a texture target that could appear at several eccentricities. Adapting to high or low spatial frequencies selectively affected performance in a manner consistent with changes in resolution. Moreover, adapting to high, but not low, frequencies mitigated the attentional benefit at central locations where resolution was too high; this shows that attention can improve performance by decreasing resolution. Altogether, our results indicate that endogenous attention benefits performance by modulating the contribution of high-frequency information in order to flexibly adjust spatial resolution according to task demands. PMID:28118103

Effects of spatial resolution

NASA Technical Reports Server (NTRS)

Abrams, M.

1982-01-01

Studies of the effects of spatial resolution on extraction of geologic information are woefully lacking but spatial resolution effects can be examined as they influence two general categories: detection of spatial features per se; and the effects of IFOV on the definition of spectral signatures and on general mapping abilities.

Spatial, Temporal and Spectral Satellite Image Fusion via Sparse Representation

NASA Astrophysics Data System (ADS)

Song, Huihui

Remote sensing provides good measurements for monitoring and further analyzing the climate change, dynamics of ecosystem, and human activities in global or regional scales. Over the past two decades, the number of launched satellite sensors has been increasing with the development of aerospace technologies and the growing requirements on remote sensing data in a vast amount of application fields. However, a key technological challenge confronting these sensors is that they tradeoff between spatial resolution and other properties, including temporal resolution, spectral resolution, swath width, etc., due to the limitations of hardware technology and budget constraints. To increase the spatial resolution of data with other good properties, one possible cost-effective solution is to explore data integration methods that can fuse multi-resolution data from multiple sensors, thereby enhancing the application capabilities of available remote sensing data. In this thesis, we propose to fuse the spatial resolution with temporal resolution and spectral resolution, respectively, based on sparse representation theory. Taking the study case of Landsat ETM+ (with spatial resolution of 30m and temporal resolution of 16 days) and MODIS (with spatial resolution of 250m ~ 1km and daily temporal resolution) reflectance, we propose two spatial-temporal fusion methods to combine the fine spatial information of Landsat image and the daily temporal resolution of MODIS image. Motivated by that the images from these two sensors are comparable on corresponding bands, we propose to link their spatial information on available Landsat- MODIS image pair (captured on prior date) and then predict the Landsat image from the MODIS counterpart on prediction date. To well-learn the spatial details from the prior images, we use a redundant dictionary to extract the basic representation atoms for both Landsat and MODIS images based on sparse representation. Under the scenario of two prior Landsat-MODIS image pairs, we build the corresponding relationship between the difference images of MODIS and ETM+ by training a low- and high-resolution dictionary pair from the given prior image pairs. In the second scenario, i.e., only one Landsat- MODIS image pair being available, we directly correlate MODIS and ETM+ data through an image degradation model. Then, the fusion stage is achieved by super-resolving the MODIS image combining the high-pass modulation in a two-layer fusion framework. Remarkably, the proposed spatial-temporal fusion methods form a unified framework for blending remote sensing images with phenology change or land-cover-type change. Based on the proposed spatial-temporal fusion models, we propose to monitor the land use/land cover changes in Shenzhen, China. As a fast-growing city, Shenzhen faces the problem of detecting the rapid changes for both rational city planning and sustainable development. However, the cloudy and rainy weather in region Shenzhen located makes the capturing circle of high-quality satellite images longer than their normal revisit periods. Spatial-temporal fusion methods are capable to tackle this problem by improving the spatial resolution of images with coarse spatial resolution but frequent temporal coverage, thereby making the detection of rapid changes possible. On two Landsat-MODIS datasets with annual and monthly changes, respectively, we apply the proposed spatial-temporal fusion methods to the task of multiple change detection. Afterward, we propose a novel spatial and spectral fusion method for satellite multispectral and hyperspectral (or high-spectral) images based on dictionary-pair learning and sparse non-negative matrix factorization. By combining the spectral information from hyperspectral image, which is characterized by low spatial resolution but high spectral resolution and abbreviated as LSHS, and the spatial information from multispectral image, which is featured by high spatial resolution but low spectral resolution and abbreviated as HSLS, this method aims to generate the fused data with both high spatial and high spectral resolutions. Motivated by the observation that each hyperspectral pixel can be represented by a linear combination of a few endmembers, this method first extracts the spectral bases of LSHS and HSLS images by making full use of the rich spectral information in LSHS data. The spectral bases of these two categories data then formulate a dictionary-pair due to their correspondence in representing each pixel spectra of LSHS data and HSLS data, respectively. Subsequently, the LSHS image is spatially unmixed by representing the HSLS image with respect to the corresponding learned dictionary to derive its representation coefficients. Combining the spectral bases of LSHS data and the representation coefficients of HSLS data, we finally derive the fused data characterized by the spectral resolution of LSHS data and the spatial resolution of HSLS data.

The Cryospheres of Mars and Ceres - What thermal observations tell us about near surface ice.

NASA Astrophysics Data System (ADS)

Titus, T. N.; Li, J. Y.; Moullet, A.

2017-12-01

Mars and Ceres both have near surface water ice that forms a cryosphere at polar latitudes. Gamma ray and neutron observations have provided important constraints on the location and depths of the cryosphere for both planetary bodies, but these observations have very low spatial resolution [e.g. 1, 2]. Thermal observations, which are also sensitive to the presence of a near-surface cryosphere as demonstrated by several studies of Mars [e.g. 3, 4], provide additional constraints. Thermal observations can identify depth to the cryosphere (as long as it is within a few thermal skin depths) and water-ice stability. This presentation will compare both the similarities and the differences of these two planetary cryospheres, as well as the thermal observations from Mars Global Surveyor (MGS) Thermal Emission Spectrometer (TES) [5], the Atacama Large Millimeter/submillimeter Array (ALMA) [6], and publically available Dawn Visible Infrared spectrometer (VIR) [7]. The KRC thermal model [8] will use these observed surface temperatures to constrain depths to near surface ice (i.e. the cyropshere). References: [1] Feldman et al., 2002, Science, 297(5578), 75-78. [2] Prettyman et al., 2017, Science, 355(6320), 55-59. [3] Titus et al., 2003, Science, 299(5609), 1048-1051 [4] Mellon et al., 2008, JGR, 113(E12), CiteID E00A25. [5] Christensen et al., 1998, Science, 279(5357), 1692. [6] Wootten A. et al. (2015) IAU General Assembly, Meeting #29, #2237199 [7] de Santis et al., 2011, Space Science Reviews, 163(1-4), 329-369. [8] Kieffer, 2013, JGR, 118, Issue 3, pp. 451-470.

Results of the spatial resolution simulation for multispectral data (resolution brochures)

NASA Technical Reports Server (NTRS)

1982-01-01

The variable information content of Earth Resource products at different levels of spatial resolution and in different spectral bands is addressed. A low-cost brochure that scientists and laymen could use to visualize the effects of increasing the spatial resolution of multispectral scanner images was produced.

Image sharpening for mixed spatial and spectral resolution satellite systems

NASA Technical Reports Server (NTRS)

Hallada, W. A.; Cox, S.

1983-01-01

Two methods of image sharpening (reconstruction) are compared. The first, a spatial filtering technique, extrapolates edge information from a high spatial resolution panchromatic band at 10 meters and adds it to the low spatial resolution narrow spectral bands. The second method, a color normalizing technique, is based on the ability to separate image hue and brightness components in spectral data. Using both techniques, multispectral images are sharpened from 30, 50, 70, and 90 meter resolutions. Error rates are calculated for the two methods and all sharpened resolutions. The results indicate that the color normalizing method is superior to the spatial filtering technique.

Spatial Resolution Requirements for Accurate Identification of Drivers of Atrial Fibrillation

PubMed Central

Roney, Caroline H.; Cantwell, Chris D.; Bayer, Jason D.; Qureshi, Norman A.; Lim, Phang Boon; Tweedy, Jennifer H.; Kanagaratnam, Prapa; Vigmond, Edward J.; Ng, Fu Siong

2017-01-01

Background— Recent studies have demonstrated conflicting mechanisms underlying atrial fibrillation (AF), with the spatial resolution of data often cited as a potential reason for the disagreement. The purpose of this study was to investigate whether the variation in spatial resolution of mapping may lead to misinterpretation of the underlying mechanism in persistent AF. Methods and Results— Simulations of rotors and focal sources were performed to estimate the minimum number of recording points required to correctly identify the underlying AF mechanism. The effects of different data types (action potentials and unipolar or bipolar electrograms) and rotor stability on resolution requirements were investigated. We also determined the ability of clinically used endocardial catheters to identify AF mechanisms using clinically recorded and simulated data. The spatial resolution required for correct identification of rotors and focal sources is a linear function of spatial wavelength (the distance between wavefronts) of the arrhythmia. Rotor localization errors are larger for electrogram data than for action potential data. Stationary rotors are more reliably identified compared with meandering trajectories, for any given spatial resolution. All clinical high-resolution multipolar catheters are of sufficient resolution to accurately detect and track rotors when placed over the rotor core although the low-resolution basket catheter is prone to false detections and may incorrectly identify rotors that are not present. Conclusions— The spatial resolution of AF data can significantly affect the interpretation of the underlying AF mechanism. Therefore, the interpretation of human AF data must be taken in the context of the spatial resolution of the recordings. PMID:28500175

DOE Office of Scientific and Technical Information (OSTI.GOV)

Kirtley, John R., E-mail: jkirtley@stanford.edu; Rosenberg, Aaron J.; Palmstrom, Johanna C.

Superconducting QUantum Interference Device (SQUID) microscopy has excellent magnetic field sensitivity, but suffers from modest spatial resolution when compared with other scanning probes. This spatial resolution is determined by both the size of the field sensitive area and the spacing between this area and the sample surface. In this paper we describe scanning SQUID susceptometers that achieve sub-micron spatial resolution while retaining a white noise floor flux sensitivity of ≈2μΦ{sub 0}/Hz{sup 1/2}. This high spatial resolution is accomplished by deep sub-micron feature sizes, well shielded pickup loops fabricated using a planarized process, and a deep etch step that minimizes themore » spacing between the sample surface and the SQUID pickup loop. We describe the design, modeling, fabrication, and testing of these sensors. Although sub-micron spatial resolution has been achieved previously in scanning SQUID sensors, our sensors not only achieve high spatial resolution but also have integrated modulation coils for flux feedback, integrated field coils for susceptibility measurements, and batch processing. They are therefore a generally applicable tool for imaging sample magnetization, currents, and susceptibilities with higher spatial resolution than previous susceptometers.« less

Chromatic and Achromatic Spatial Resolution of Local Field Potentials in Awake Cortex

PubMed Central

Jansen, Michael; Li, Xiaobing; Lashgari, Reza; Kremkow, Jens; Bereshpolova, Yulia; Swadlow, Harvey A.; Zaidi, Qasim; Alonso, Jose-Manuel

2015-01-01

Local field potentials (LFPs) have become an important measure of neuronal population activity in the brain and could provide robust signals to guide the implant of visual cortical prosthesis in the future. However, it remains unclear whether LFPs can detect weak cortical responses (e.g., cortical responses to equiluminant color) and whether they have enough visual spatial resolution to distinguish different chromatic and achromatic stimulus patterns. By recording from awake behaving macaques in primary visual cortex, here we demonstrate that LFPs respond robustly to pure chromatic stimuli and exhibit ∼2.5 times lower spatial resolution for chromatic than achromatic stimulus patterns, a value that resembles the ratio of achromatic/chromatic resolution measured with psychophysical experiments in humans. We also show that, although the spatial resolution of LFP decays with visual eccentricity as is also the case for single neurons, LFPs have higher spatial resolution and show weaker response suppression to low spatial frequencies than spiking multiunit activity. These results indicate that LFP recordings are an excellent approach to measure spatial resolution from local populations of neurons in visual cortex including those responsive to color. PMID:25416722

Calculation of the spatial resolution in two-photon absorption spectroscopy applied to plasma diagnosis

DOE Office of Scientific and Technical Information (OSTI.GOV)

Garcia-Lechuga, M.; Laser Processing Group, Instituto de Óptica “Daza de Valdés,” CSIC, 28006-Madrid; Fuentes, L. M.

2014-10-07

We report a detailed characterization of the spatial resolution provided by two-photon absorption spectroscopy suited for plasma diagnosis via the 1S-2S transition of atomic hydrogen for optogalvanic detection and laser induced fluorescence (LIF). A precise knowledge of the spatial resolution is crucial for a correct interpretation of measurements, if the plasma parameters to be analysed undergo strong spatial variations. The present study is based on a novel approach which provides a reliable and realistic determination of the spatial resolution. Measured irradiance distribution of laser beam waists in the overlap volume, provided by a high resolution UV camera, are employed tomore » resolve coupled rate equations accounting for two-photon excitation, fluorescence decay and ionization. The resulting three-dimensional yield distributions reveal in detail the spatial resolution for optogalvanic and LIF detection and related saturation due to depletion. Two-photon absorption profiles broader than the Fourier transform-limited laser bandwidth are also incorporated in the calculations. The approach allows an accurate analysis of the spatial resolution present in recent and future measurements.« less

Characterization of Avian Influenza and Newcastle Disease Viruses from Poultry in Libya.

PubMed

Kammon, Abdulwahab; Heidari, Alireza; Dayhum, Abdunaser; Eldaghayes, Ibrahim; Sharif, Monier; Monne, Isabela; Cattoli, Giovanni; Asheg, Abdulatif; Farhat, Milad; Kraim, Elforjani

2015-09-01

On March 2013, the Libyan poultry industry faced severe outbreaks due to mixed infections of APMV-1 (Newcastle disease) and low pathogenic avian influenza (AI) of the H9N2 subtype which were causing high mortality and great economic losses. APMV-1 and H9N2 were isolated and characterized. Genetic sequencing of the APMV-1/chicken/Libya/13VIR/ 7225-1/2013 isolate revealed the presence of a velogenic APMV-1 belonging to lineage 5 (GRRRQKR*F Lin.5) or genotype VII in class II, according to the nomenclature in use. Three AI viruses of the H9N2 subtype, namely A/avian/Libya/13VIR7225-2/2013, A/avian/Libya/13VIR7225-3/2013, and A/avian/Libya/13VIR7225-5/2013, were isolated and found to belong to the G1 lineage. Analysis of amino acid sequences showed that the analyzed H9N2 viruses contained the amino acid Leu at position 226 (H3 numbering) at the receptor binding site of the HA, responsible for human virus-like receptor specificity. On March 2014, an outbreak of highly pathogenic avian influenza (HPAI) virus of the H5N1 subtype was diagnosed in a backyard poultry farm in an eastern region of Libya. The H5N1 isolate (A/chicken/Libya/14VIR2749-16/2014) was detected by real time RT-PCR (rRT-PCR). Genetic characterization of the HA gene revealed that the identified subtype was highly pathogenic, belonged to the 2.2.1 lineage, and clustered with recent Egyptian viruses. This study revealed the presence of a velogenic APMV-1 genotype and of two influenza subtypes, namely HPAI H5N1 and H9N2, which are of major interest for public and animal health. Considering these findings, more investigations must be undertaken to establish and implement adequate influenza surveillance programs; this would allow better study of the epidemiology of APMV-1 genotype VII in Libya and evaluation of the current vaccination strategies.

[An effective method for improving the imaging spatial resolution of terahertz time domain spectroscopy system].

PubMed

Zhang, Zeng-yan; Ji, Te; Zhu, Zhi-yong; Zhao, Hong-wei; Chen, Min; Xiao, Ti-qiao; Guo, Zhi

2015-01-01

Terahertz radiation is an electromagnetic radiation in the range between millimeter waves and far infrared. Due to its low energy and non-ionizing characters, THz pulse imaging emerges as a novel tool in many fields, such as material, chemical, biological medicine, and food safety. Limited spatial resolution is a significant restricting factor of terahertz imaging technology. Near field imaging method was proposed to improve the spatial resolution of terahertz system. Submillimeter scale's spauial resolution can be achieved if the income source size is smaller than the wawelength of the incoming source and the source is very close to the sample. But many changes were needed to the traditional terahertz time domain spectroscopy system, and it's very complex to analyze sample's physical parameters through the terahertz signal. A method of inserting a pinhole upstream to the sample was first proposed in this article to improve the spatial resolution of traditional terahertz time domain spectroscopy system. The measured spatial resolution of terahertz time domain spectroscopy system by knife edge method can achieve spatial resolution curves. The moving stage distance between 10 % and 90 Yo of the maximum signals respectively was defined as the, spatial resolution of the system. Imaging spatial resolution of traditional terahertz time domain spectroscopy system was improved dramatically after inserted a pinhole with diameter 0. 5 mm, 2 mm upstream to the sample. Experimental results show that the spatial resolution has been improved from 1. 276 mm to 0. 774 mm, with the increment about 39 %. Though this simple method, the spatial resolution of traditional terahertz time domain spectroscopy system was increased from millimeter scale to submillimeter scale. A pinhole with diameter 1 mm on a polyethylene plate was taken as sample, to terahertz imaging study. The traditional terahertz time domain spectroscopy system and pinhole inserted terahertz time domain spectroscopy system were applied in the imaging experiment respectively. The relative THz-power loss imaging of samples were use in this article. This method generally delivers the best signal to noise ratio in loss images, dispersion effects are cancelled. Terahertz imaging results show that the sample's boundary was more distinct after inserting the pinhole in front of, sample. The results also conform that inserting pinhole in front of sample can improve the imaging spatial resolution effectively. The theoretical analyses of the method which improve the spatial resolution by inserting a pinhole in front of sample were given in this article. The analyses also indicate that the smaller the pinhole size, the longer spatial coherence length of the system, the better spatial resolution of the system. At the same time the terahertz signal will be reduced accordingly. All the experimental results and theoretical analyses indicate that the method of inserting a pinhole in front of sample can improve the spatial resolution of traditional terahertz time domain spectroscopy system effectively, and it will further expand the application of terahertz imaging technology.

Compositional Diversity of the Vestan Regolith Derived from Howardite Compositions and Dawn VIR Spectra

NASA Technical Reports Server (NTRS)

Mittlefehldt, D. W.; Ammannito, E.; Hiroi, T.; DeAngeles, S.; Moriarty, D. P.; DiIorio, T.; Pieters, C. M.; DeSanctis, M. C.

2014-01-01

Howardite, eucrite and diogenite meteorites likely come from asteroid 4 Vesta [1]. Howardites - physical mixtures of eucrites and diogenites - are of two subtypes: regolithic howardites were gardened in the true regolith; fragmental howardites are simple polymict breccias [2]. The Dawn spacecraft imaged the howarditic surface of Vesta with the visible and infrared mapping spectrometer (VIR) resulting in qualitative maps of the distributions of distinct diogenite-rich and eucrite-rich terranes [3, 4]. We are developing a robust basis for quantitative mapping of the distribution of lithologic types using spectra acquired on splits of well-characterized howardites [5, 6]. Spectra were measured on sample powders sieved to <75 µm in the laboratories of the Istituto di Astrofisica e Planetologia Spaziali and Brown University. Data reduction was done using the methods developed to process Dawn VIR spectra [4]. The band parameters for the 1 and 2 µm pyroxene absorption features (hereafter BI and BII) can be directly compared to Dawn VIR results. Regolithic howardites have shallower BI and BII absorptions compared to fragmental howardites with similar compositions. However, there are statistically significant correlations between Al or Ca contents and BI or BII center wavelengths regardless of howardite subtype. Diogenites are poor in Al and Ca while eucrites are rich in these elements. The laboratory spectra can thus be directly correlated with the percentage of eucrite material contained in the howardites. We are using these correlations to quantitatively map Al and Ca distributions, and thus the percentage of eucritic material, in the current regolith of Vesta.

NeuroD modulates opioid agonist-selective regulation of adult neurogenesis and contextual memory extinction.

PubMed

Zheng, Hui; Zhang, Yue; Li, Wen; Loh, Horace H; Law, Ping-Yee

2013-04-01

Addictive drugs, including opioids, modulate adult neurogenesis. In order to delineate the probable implications of neurogenesis on contextual memory associated with addiction, we investigated opioid agonist-selective regulation of neurogenic differentiation 1 (NeuroD) activities under the conditioned place preference (CPP) paradigm. Training mice with equivalent doses of morphine and fentanyl produced different CPP extinction rates without measurable differences in the CPP acquisition rate or magnitude. Fentanyl-induced CPP required much longer time for extinction than morphine-induced CPP. We observed a parallel decrease in NeuroD activities and neurogenesis after morphine-induced CPP, but not after fentanyl-induced CPP. Increasing NeuroD activities with NeuroD-lentivirus (nd-vir) injection at the dentate gyrus before CPP training reversed morphine-induced decreases in NeuroD activities and neurogenesis, and prolonged the time required for extinction of morphine-induced CPP. On the other hand, decreasing NeuroD activities via injection of miRNA-190-virus (190-vir) reversed the fentanyl effect on NeuroD and neurogenesis and shortened the time required for extinction of fentanyl-induced CPP. Another contextual memory task, the Morris Water Maze (MWM), was affected similarly by alteration of NeuroD activities. The reduction in NeuroD activities either by morphine treatment or 190-vir injection decreased MWM task retention, while the increase in NeuroD activities by nd-vir prolonged MWM task retention. Thus, by controlling NeuroD activities, opioid agonists differentially regulate adult neurogenesis and subsequent contextual memory retention. Such drug-related memory regulation could have implications in eventual context-associated relapse.

VirGO: A Visual Browser for the ESO Science Archive Facility

NASA Astrophysics Data System (ADS)

Chéreau, Fabien

2012-04-01

VirGO is the next generation Visual Browser for the ESO Science Archive Facility developed by the Virtual Observatory (VO) Systems Department. It is a plug-in for the popular open source software Stellarium adding capabilities for browsing professional astronomical data. VirGO gives astronomers the possibility to easily discover and select data from millions of observations in a new visual and intuitive way. Its main feature is to perform real-time access and graphical display of a large number of observations by showing instrumental footprints and image previews, and to allow their selection and filtering for subsequent download from the ESO SAF web interface. It also allows the loading of external FITS files or VOTables, the superimposition of Digitized Sky Survey (DSS) background images, and the visualization of the sky in a `real life' mode as seen from the main ESO sites. All data interfaces are based on Virtual Observatory standards which allow access to images and spectra from external data centers, and interaction with the ESO SAF web interface or any other VO applications supporting the PLASTIC messaging system.

Information system analysis of an e-learning system used for dental restorations simulation.

PubMed

Bogdan, Crenguţa M; Popovici, Dorin M

2012-09-01

The goal of using virtual and augmented reality technologies in therapeutic interventions simulation, in the fixed prosthodontics (VirDenT) project, is to increase the quality of the educational process in dental faculties, by assisting students in learning how to prepare teeth for all-ceramic restorations. Its main component is an e-learning virtual reality-based software system that will be used for the developing skills in grinding teeth, needed in all-ceramic restorations. The complexity of the domain problem that the software system dealt with made the analysis of the information system supported by VirDenT necessary. The analysis contains the following activities: identification and classification of the system stakeholders, description of the business processes, formulation of the business rules, and modelling of business objects. During this stage, we constructed the context diagram, the business use case diagram, the activity diagrams and the class diagram of the domain model. These models are useful for the further development of the software system that implements the VirDenT information system. Copyright © 2011 Elsevier Ireland Ltd. All rights reserved.

Additional studies of forest classification accuracy as influenced by multispectral scanner spatial resolution

NASA Technical Reports Server (NTRS)

Sadowski, F. E.; Sarno, J. E.

1976-01-01

First, an analysis of forest feature signatures was used to help explain the large variation in classification accuracy that can occur among individual forest features for any one case of spatial resolution and the inconsistent changes in classification accuracy that were demonstrated among features as spatial resolution was degraded. Second, the classification rejection threshold was varied in an effort to reduce the large proportion of unclassified resolution elements that previously appeared in the processing of coarse resolution data when a constant rejection threshold was used for all cases of spatial resolution. For the signature analysis, two-channel ellipse plots showing the feature signature distributions for several cases of spatial resolution indicated that the capability of signatures to correctly identify their respective features is dependent on the amount of statistical overlap among signatures. Reductions in signature variance that occur in data of degraded spatial resolution may not necessarily decrease the amount of statistical overlap among signatures having large variance and small mean separations. Features classified by such signatures may thus continue to have similar amounts of misclassified elements in coarser resolution data, and thus, not necessarily improve in classification accuracy.

Handling Different Spatial Resolutions in Image Fusion by Multivariate Curve Resolution-Alternating Least Squares for Incomplete Image Multisets.

PubMed

Piqueras, Sara; Bedia, Carmen; Beleites, Claudia; Krafft, Christoph; Popp, Jürgen; Maeder, Marcel; Tauler, Romà; de Juan, Anna

2018-06-05

Data fusion of different imaging techniques allows a comprehensive description of chemical and biological systems. Yet, joining images acquired with different spectroscopic platforms is complex because of the different sample orientation and image spatial resolution. Whereas matching sample orientation is often solved by performing suitable affine transformations of rotation, translation, and scaling among images, the main difficulty in image fusion is preserving the spatial detail of the highest spatial resolution image during multitechnique image analysis. In this work, a special variant of the unmixing algorithm Multivariate Curve Resolution Alternating Least Squares (MCR-ALS) for incomplete multisets is proposed to provide a solution for this kind of problem. This algorithm allows analyzing simultaneously images collected with different spectroscopic platforms without losing spatial resolution and ensuring spatial coherence among the images treated. The incomplete multiset structure concatenates images of the two platforms at the lowest spatial resolution with the image acquired with the highest spatial resolution. As a result, the constituents of the sample analyzed are defined by a single set of distribution maps, common to all platforms used and with the highest spatial resolution, and their related extended spectral signatures, covering the signals provided by each of the fused techniques. We demonstrate the potential of the new variant of MCR-ALS for multitechnique analysis on three case studies: (i) a model example of MIR and Raman images of pharmaceutical mixture, (ii) FT-IR and Raman images of palatine tonsil tissue, and (iii) mass spectrometry and Raman images of bean tissue.

Assessing the Resolution Adaptability of the Zhang-McFarlane Cumulus Parameterization With Spatial and Temporal Averaging: RESOLUTION ADAPTABILITY OF ZM SCHEME

DOE Office of Scientific and Technical Information (OSTI.GOV)

Yun, Yuxing; Fan, Jiwen; Xiao, Heng

Realistic modeling of cumulus convection at fine model resolutions (a few to a few tens of km) is problematic since it requires the cumulus scheme to adapt to higher resolution than they were originally designed for (~100 km). To solve this problem, we implement the spatial averaging method proposed in Xiao et al. (2015) and also propose a temporal averaging method for the large-scale convective available potential energy (CAPE) tendency in the Zhang-McFarlane (ZM) cumulus parameterization. The resolution adaptability of the original ZM scheme, the scheme with spatial averaging, and the scheme with both spatial and temporal averaging at 4-32more » km resolution is assessed using the Weather Research and Forecasting (WRF) model, by comparing with Cloud Resolving Model (CRM) results. We find that the original ZM scheme has very poor resolution adaptability, with sub-grid convective transport and precipitation increasing significantly as the resolution increases. The spatial averaging method improves the resolution adaptability of the ZM scheme and better conserves the total transport of moist static energy and total precipitation. With the temporal averaging method, the resolution adaptability of the scheme is further improved, with sub-grid convective precipitation becoming smaller than resolved precipitation for resolution higher than 8 km, which is consistent with the results from the CRM simulation. Both the spatial distribution and time series of precipitation are improved with the spatial and temporal averaging methods. The results may be helpful for developing resolution adaptability for other cumulus parameterizations that are based on quasi-equilibrium assumption.« less

Achieving high spatial resolution using a microchannel plate detector with an economic and scalable approach

NASA Astrophysics Data System (ADS)

Wiggins, B. B.; deSouza, Z. O.; Vadas, J.; Alexander, A.; Hudan, S.; deSouza, R. T.

2017-11-01

A second generation position-sensitive microchannel plate detector using the induced signal approach has been realized. This detector is presently capable of measuring the incident position of electrons, photons, or ions. To assess the spatial resolution, the masked detector was illuminated by electrons. The initial, measured spatial resolution of 276 μm FWHM was improved by requiring a minimum signal amplitude on the anode and by employing digital signal processing techniques. The resulting measured spatial resolution of 119 μm FWHM corresponds to an intrinsic resolution of 98 μm FWHM when the effect of the finite slit width is de-convoluted. This measurement is a substantial improvement from the last reported spatial resolution of 466 μm FWHM using the induced signal approach. To understand the factors that limit the measured resolution, the performance of the detector is simulated.

Statistical model based iterative reconstruction (MBIR) in clinical CT systems. Part II. Experimental assessment of spatial resolution performance.

PubMed

Li, Ke; Garrett, John; Ge, Yongshuai; Chen, Guang-Hong

2014-07-01

Statistical model based iterative reconstruction (MBIR) methods have been introduced to clinical CT systems and are being used in some clinical diagnostic applications. The purpose of this paper is to experimentally assess the unique spatial resolution characteristics of this nonlinear reconstruction method and identify its potential impact on the detectabilities and the associated radiation dose levels for specific imaging tasks. The thoracic section of a pediatric phantom was repeatedly scanned 50 or 100 times using a 64-slice clinical CT scanner at four different dose levels [CTDIvol =4, 8, 12, 16 (mGy)]. Both filtered backprojection (FBP) and MBIR (Veo(®), GE Healthcare, Waukesha, WI) were used for image reconstruction and results were compared with one another. Eight test objects in the phantom with contrast levels ranging from 13 to 1710 HU were used to assess spatial resolution. The axial spatial resolution was quantified with the point spread function (PSF), while the z resolution was quantified with the slice sensitivity profile. Both were measured locally on the test objects and in the image domain. The dependence of spatial resolution on contrast and dose levels was studied. The study also features a systematic investigation of the potential trade-off between spatial resolution and locally defined noise and their joint impact on the overall image quality, which was quantified by the image domain-based channelized Hotelling observer (CHO) detectability index d'. (1) The axial spatial resolution of MBIR depends on both radiation dose level and image contrast level, whereas it is supposedly independent of these two factors in FBP. The axial spatial resolution of MBIR always improved with an increasing radiation dose level and/or contrast level. (2) The axial spatial resolution of MBIR became equivalent to that of FBP at some transitional contrast level, above which MBIR demonstrated superior spatial resolution than FBP (and vice versa); the value of this transitional contrast highly depended on the dose level. (3) The PSFs of MBIR could be approximated as Gaussian functions with reasonably good accuracy. (4) Thez resolution of MBIR showed similar contrast and dose dependence. (5) Noise standard deviation assessed on the edges of objects demonstrated a trade-off with spatial resolution in MBIR. (5) When both spatial resolution and image noise were considered using the CHO analysis, MBIR led to significant improvement in the overall CT image quality for both high and low contrast detection tasks at both standard and low dose levels. Due to the intrinsic nonlinearity of the MBIR method, many well-known CT spatial resolution and noise properties have been modified. In particular, dose dependence and contrast dependence have been introduced to the spatial resolution of CT images by MBIR. The method has also introduced some novel noise-resolution trade-off not seen in traditional CT images. While the benefits of MBIR regarding the overall image quality, as demonstrated in this work, are significant, the optimal use of this method in clinical practice demands a thorough understanding of its unique physical characteristics.

a Spiral-Based Downscaling Method for Generating 30 M Time Series Image Data

NASA Astrophysics Data System (ADS)

Liu, B.; Chen, J.; Xing, H.; Wu, H.; Zhang, J.

2017-09-01

The spatial detail and updating frequency of land cover data are important factors influencing land surface dynamic monitoring applications in high spatial resolution scale. However, the fragmentized patches and seasonal variable of some land cover types (e. g. small crop field, wetland) make it labor-intensive and difficult in the generation of land cover data. Utilizing the high spatial resolution multi-temporal image data is a possible solution. Unfortunately, the spatial and temporal resolution of available remote sensing data like Landsat or MODIS datasets can hardly satisfy the minimum mapping unit and frequency of current land cover mapping / updating at the same time. The generation of high resolution time series may be a compromise to cover the shortage in land cover updating process. One of popular way is to downscale multi-temporal MODIS data with other high spatial resolution auxiliary data like Landsat. But the usual manner of downscaling pixel based on a window may lead to the underdetermined problem in heterogeneous area, result in the uncertainty of some high spatial resolution pixels. Therefore, the downscaled multi-temporal data can hardly reach high spatial resolution as Landsat data. A spiral based method was introduced to downscale low spatial and high temporal resolution image data to high spatial and high temporal resolution image data. By the way of searching the similar pixels around the adjacent region based on the spiral, the pixel set was made up in the adjacent region pixel by pixel. The underdetermined problem is prevented to a large extent from solving the linear system when adopting the pixel set constructed. With the help of ordinary least squares, the method inverted the endmember values of linear system. The high spatial resolution image was reconstructed on the basis of high spatial resolution class map and the endmember values band by band. Then, the high spatial resolution time series was formed with these high spatial resolution images image by image. Simulated experiment and remote sensing image downscaling experiment were conducted. In simulated experiment, the 30 meters class map dataset Globeland30 was adopted to investigate the effect on avoid the underdetermined problem in downscaling procedure and a comparison between spiral and window was conducted. Further, the MODIS NDVI and Landsat image data was adopted to generate the 30m time series NDVI in remote sensing image downscaling experiment. Simulated experiment results showed that the proposed method had a robust performance in downscaling pixel in heterogeneous region and indicated that it was superior to the traditional window-based methods. The high resolution time series generated may be a benefit to the mapping and updating of land cover data.

Temperature Regulation of Shigella Virulence: Identification of Temperature-Regulated Shigella Invasion Genes by the Isolation of inv::lacZ Operon Fusions and the Characterization of the Virulence Gene Regulator virR

DTIC Science & Technology

1991-04-10

Partial nucleotide sequence of viri? clone pAEH122 102 14. Effects of VirR’ activity on Ipa expression 106 15. Sequencing strategy for the 2.3 kb EcoRl...Confluent monolayers of mammalian cells are challenged with virulent organisms and invasion and intercellular spread result in a cytopathic effect ...destruction of the mucosal surface and an inflammatory response ensues which mimics the effects of invasion and intercellular spread in the mucosa of the

Observations of H II regions around Zeta OPH and other O-B stars

NASA Astrophysics Data System (ADS)

Shestakova, L. I.; Kutirev, A. S.; Ataev, A. Sh.

1988-01-01

A Fabry-Perot spectrometer was used to measure the emission intensities in H-beta near Zeta Oph, Alpha Vir, Alpha Cam, and HD 188209. The spectrometer sensitivity is 0.2 rayleighs, the intensity measurement accuracy is 20 percent. Ionization zone boundaries are determined for Zeta Oph and Alpha Vir; the angular diameters of both regions are about 15 deg. The contour of the H II region near Zeta Oph on the level of the double background in the southwest does not close; instead, it expands again and incorporates the region associated with the B-association II Sco.

Chromatic and Achromatic Spatial Resolution of Local Field Potentials in Awake Cortex.

PubMed

Jansen, Michael; Li, Xiaobing; Lashgari, Reza; Kremkow, Jens; Bereshpolova, Yulia; Swadlow, Harvey A; Zaidi, Qasim; Alonso, Jose-Manuel

2015-10-01

Local field potentials (LFPs) have become an important measure of neuronal population activity in the brain and could provide robust signals to guide the implant of visual cortical prosthesis in the future. However, it remains unclear whether LFPs can detect weak cortical responses (e.g., cortical responses to equiluminant color) and whether they have enough visual spatial resolution to distinguish different chromatic and achromatic stimulus patterns. By recording from awake behaving macaques in primary visual cortex, here we demonstrate that LFPs respond robustly to pure chromatic stimuli and exhibit ∼2.5 times lower spatial resolution for chromatic than achromatic stimulus patterns, a value that resembles the ratio of achromatic/chromatic resolution measured with psychophysical experiments in humans. We also show that, although the spatial resolution of LFP decays with visual eccentricity as is also the case for single neurons, LFPs have higher spatial resolution and show weaker response suppression to low spatial frequencies than spiking multiunit activity. These results indicate that LFP recordings are an excellent approach to measure spatial resolution from local populations of neurons in visual cortex including those responsive to color. © The Author 2014. Published by Oxford University Press.

The spatial resolution of silicon-based electron detectors in beta-autoradiography.

PubMed

Cabello, Jorge; Wells, Kevin

2010-03-21

Thin tissue autoradiography is an imaging modality where ex-vivo tissue sections are placed in direct contact with autoradiographic film. These tissue sections contain a radiolabelled ligand bound to a specific biomolecule under study. This radioligand emits beta - or beta+ particles ionizing silver halide crystals in the film. High spatial resolution autoradiograms are obtained using low energy radioisotopes, such as (3)H where an intrinsic 0.1-1 microm spatial resolution can be achieved. Several digital alternatives have been presented over the past few years to replace conventional film but their spatial resolution has yet to equal film, although silicon-based imaging technologies have demonstrated higher sensitivity compared to conventional film. It will be shown in this work how pixel size is a critical parameter for achieving high spatial resolution for low energy uncollimated beta imaging. In this work we also examine the confounding factors impeding silicon-based technologies with respect to spatial resolution. The study considers charge diffusion in silicon and detector noise, and this is applied to a range of radioisotopes typically used in autoradiography. Finally an optimal detector geometry to obtain the best possible spatial resolution for a specific technology and a specific radioisotope is suggested.

DOE Office of Scientific and Technical Information (OSTI.GOV)

Scaduto, DA; Hu, Y-H; Zhao, W

Purpose: Spatial resolution in digital breast tomosynthesis (DBT) is affected by inherent/binned detector resolution, oblique entry of x-rays, and focal spot size/motion; the limited angular range further limits spatial resolution in the depth-direction. While DBT is being widely adopted clinically, imaging performance metrics and quality control protocols have not been standardized. AAPM Task Group 245 on Tomosynthesis Quality Control has been formed to address this deficiency. Methods: Methods of measuring spatial resolution are evaluated using two prototype quality control phantoms for DBT. Spatial resolution in the detector plane is measured in projection and reconstruction domains using edge-spread function (ESF), point-spreadmore » function (PSF) and modulation transfer function (MTF). Spatial resolution in the depth-direction and effective slice thickness are measured in the reconstruction domain using slice sensitivity profile (SSP) and artifact spread function (ASF). An oversampled PSF in the depth-direction is measured using a 50 µm angulated tungsten wire, from which the MTF is computed. Object-dependent PSF is derived and compared with ASF. Sensitivity of these measurements to phantom positioning, imaging conditions and reconstruction algorithms is evaluated. Results are compared from systems of varying acquisition geometry (9–25 projections over 15–60°). Dependence of measurements on feature size is investigated. Results: Measurements of spatial resolution using PSF and LSF are shown to depend on feature size; depth-direction spatial resolution measurements are shown to similarly depend on feature size for ASF, though deconvolution with an object function removes feature size-dependence. A slanted wire may be used to measure oversampled PSFs, from which MTFs may be computed for both in-plane and depth-direction resolution. Conclusion: Spatial resolution measured using PSF is object-independent with sufficiently small object; MTF is object-independent. Depth-direction spatial resolution may be measured directly using MTF or indirectly using ASF or SSP as surrogate measurements. While MTF is object-independent, it is invalid for nonlinear reconstructions.« less

Spatial and temporal remote sensing data fusion for vegetation monitoring

USDA-ARS?s Scientific Manuscript database

The suite of available remote sensing instruments varies widely in terms of sensor characteristics, spatial resolution and acquisition frequency. For example, the Moderate-resolution Imaging Spectroradiometer (MODIS) provides daily global observations at 250m to 1km spatial resolution. While imagery...

Development of a large-area Multigap RPC with adequate spatial resolution for muon tomography

NASA Astrophysics Data System (ADS)

Wang, J.; Wang, Y.; Wang, X.; Zeng, M.; Xie, B.; Han, D.; Lyu, P.; Wang, F.; Li, Y.

2016-11-01

We study the performance of a large-area 2-D Multigap Resistive Plate Chamber (MRPC) designed for muon tomography with high spatial resolution. An efficiency up to 98% and a spatial resolution of around 270 μ m are obtained in cosmic ray and X-ray tests. The performance of the MRPC is also investigated for two working gases: standard gas and pure Freon. The result shows that the MRPC working in pure Freon can provide higher efficiency and better spatial resolution.

The Status of the Tropical Rainfall Measuring Mission (TRMM) after 2 Years in Orbit

NASA Technical Reports Server (NTRS)

Kummerow, C.; Simpson, J.; Thiele, O.; Barnes, W.; Chang, A. T. C.; Stocker, E.; Adler, R. F.; Hou, A.; Kakar, R.; Wentz, F.

1999-01-01

The Tropical Rainfall Measuring Mission (TRMM) satellite was launched on November 27, 1997, and data from all the instruments first became available approximately 30 days after launch. Since then, much progress has been made in the calibration of the sensors, the improvement of the rainfall algorithms, in related modeling applications and in new datasets tailored specifically for these applications. This paper reports the latest results regarding the calibration of the TRMM Microwave Imager, (TMI), Precipitation Radar (PR) and Visible and Infrared Sensor (VIRS). For the TMI, a new product is in place that corrects for a still unknown source of radiation leaking in to the TMI receiver. The PR calibration has been adjusted upward slightly (by 0.6 dBZ) to better match ground reference targets, while the VIRS calibration remains largely unchanged. In addition to the instrument calibration, great strides have been made with the rainfall algorithms as well, with the new rainfall products agreeing with each other to within less than 20% over monthly zonally averaged statistics. The TRMM Science Data and Information System (TSDIS) has responded equally well by making a number of new products, including real-time and fine resolution gridded rainfall fields available to the modeling community. The TRMM Ground Validation (GV) program is also responding with improved radar calibration techniques and rainfall algorithms to provide more accurate GV products which will be further enhanced with the new multiparameter 10 cm radar being developed for TRMM validation and precipitation studies. Progress in these various areas has, in turn, led to exciting new developments in the modeling area where Data Assimilation, and Weather Forecast models are showing dramatic improvements after the assimilation of observed rainfall fields.

The crowded magnetosphere of the post-common-envelope binary QS Virginis

NASA Astrophysics Data System (ADS)

Parsons, S. G.; Hill, C. A.; Marsh, T. R.; Gänsicke, B. T.; Watson, C. A.; Steeghs, D.; Dhillon, V. S.; Littlefair, S. P.; Copperwheat, C. M.; Schreiber, M. R.; Zorotovic, M.

2016-05-01

We present high-speed photometry and high-resolution spectroscopy of the eclipsing post-common-envelope binary QS Virginis (QS Vir). Our Ultraviolet and Visual Echelle Spectrograph (UVES) spectra span multiple orbits over more than a year and reveal the presence of several large prominences passing in front of both the M star and its white dwarf companion, allowing us to triangulate their positions. Despite showing small variations on a time-scale of days, they persist for more than a year and may last decades. One large prominence extends almost three stellar radii from the M star. Roche tomography reveals that the M star is heavily spotted and that these spots are long-lived and in relatively fixed locations, preferentially found on the hemisphere facing the white dwarf. We also determine precise binary and physical parameters for the system. We find that the 14 220 ± 350 K white dwarf is relatively massive, 0.782 ± 0.013 M⊙, and has a radius of 0.010 68 ± 0.000 07 R⊙, consistent with evolutionary models. The tidally distorted M star has a mass of 0.382 ± 0.006 M⊙ and a radius of 0.381 ± 0.003 R⊙, also consistent with evolutionary models. We find that the magnesium absorption line from the white dwarf is broader than expected. This could be due to rotation (implying a spin period of only ˜700 s), or due to a weak (˜100 kG) magnetic field, we favour the latter interpretation. Since the M star's radius is still within its Roche lobe and there is no evidence that it is overinflated, we conclude that QS Vir is most likely a pre-cataclysmic binary just about to become semidetached.

X-ray Crystal Structures of the Type IVb Secretion System DotB ATPases.

PubMed

Prevost, Marie S; Waksman, Gabriel

2018-05-17

Human infections by the intracellular bacterial pathogen Legionella pneumophila result in a severe form of pneumonia, the Legionnaire's disease. L. pneumophila utilises a type IVb secretion (T4bS) system termed "dot/icm" to secrete protein effectors to the host cytoplasm. The dot/icm system is powered at least in part by a functionally critical AAA+ ATPase, a protein called DotB, thought to belong to the VirB11 family of proteins. Here we present the crystal structure of DotB at 3.19 Å resolution, in its hexameric form. We observe that DotB is in fact a structural intermediate between VirB11 and PilT family proteins, with a PAS-like N-terminal domain coupled to a RecA-like C-terminal domain. It also shares critical structural elements only found in PilT. The structure also reveals two conformers, termed α and β, with an αβαβαβ configuration. The existence of α and β conformers in this class of proteins was confirmed by solving the structure of DotB from another bacterial pathogen, Yersinia, where, intriguingly, we observed an ααβααβ configuration. The two conformers co-exist regardless of the nucleotide-bound states of the proteins. Our investigation therefore reveals that these ATPases can adopt a wider range of conformational states than was known before, shedding new light on the extraordinary spectrum of conformations these ATPases can access to carry out their function. Overall, the structure of DotB provides a template for further rational drug-design to develop more specific antibiotics to tackle Legionnaire's disease. This article is protected by copyright. All rights reserved. © 2018 The Protein Society.

Validation of Satellite Derived Cloud Properties Over the Southeastern Pacific

NASA Astrophysics Data System (ADS)

Ayers, J.; Minnis, P.; Zuidema, P.; Sun-Mack, S.; Palikonda, R.; Nguyen, L.; Fairall, C.

2005-12-01

Satellite measurements of cloud properties and the radiation budget are essential for understanding meso- and large-scale processes that determine the variability in climate over the southeastern Pacific. Of particular interest in this region is the prevalent stratocumulus cloud deck. The stratocumulus albedos are directly related to cloud microphysical properties that need to be accurately characterized in Global Climate Models (GCMs) to properly estimate the Earth's radiation budget. Meteorological observations in this region are sparse causing large uncertainties in initialized model fields. Remote sensing from satellites can provide a wealth of information about the clouds in this region, but it is vital to validate the remotely sensed parameters and to understand their relationship to other parameters that are not directly observed by the satellites. The variety of measurements from the R/V Roger Revelle during the 2003 STRATUS cruise and from the R/V Ron Brown during EPIC 2001 and the 2004 STRATUS cruises are suitable for validating and improving the interpretation of the satellite derived cloud properties. In this study, satellite-derived cloud properties including coverage, height, optical depth, and liquid water path are compared with in situ measurements taken during the EPIC and STRATUS cruises. The remotely sensed values are derived from Geostationary Operational Environmental Satellite (GOES) imager data, Moderate Resolution Imaging Spectroradiometer (MODIS) data from the Terra and Aqua satellites, and from the Visible and Infrared Scanner (VIRS) aboard the Tropical Rainfall Measuring Mission (TRMM) satellite. The products from this study will include regional monthly cloud climatologies derived from the GOES data for the 2003 and 2004 cruises as well as micro and macro physical cloud property retrievals centered over the ship tracks from MODIS and VIRS.

The Evolution of Stellar Chromospheres

NASA Astrophysics Data System (ADS)

Simon, Theodore

1984-07-01

59 Vir (GO V) and 31 Com (GO III) are among the youngest G stars for which high dispersion spectra can be obtained with the short-wavelength camera of IUE. Their ages are estimated to be 0.2 Gyr (31 Com is a member of the Coma cluster). 59 Vir was observed at low resolution in a study of the relation between ultraviolet chromospheric activity and age in solar dwarf stars. 31 Com was observed as an example of a young yellow giant making its first crossing of the Hertzsprung Gap. Their spectra show bright chromospheric and transition region emission lines. We request observing time in this proposal to secure doubleshift (up to 16 hours) high dispersion exposures of each star with the SWP camera. These observations will allow us to resolve the profiles of individual chromospheric and transition region emission lines. From radiative transfer calculations, emission measure analyses, and line flux ratios, we will derive temperature, density, and velocity field models in the chromosphere and transition region. We will investigate the energy balance of these atmospheres in order to compare their non-thermal energy requirements with results derived for older solar-type dwarfs and more highly evolved yellow and red giants. With precautions to ensure the fidelity of the wavelength scale, we will also look far differential velocity shifts between TR and chromospheric lines, which may arise from global atmospheric circulation patterns. We have shown in previous work that redshifted TR lines are most clearly seen in giant stars and that the downflows causing the line shifts may affect the energy balance of giant atmospheres. As one of the very few normal G giants whose spectrum can be studied at high dispersion, 31 Com is important to such studies.

Estimation of Orbital Neutron Detector Spatial Resolution by Systematic Shifting of Differential Topographic Masks

NASA Technical Reports Server (NTRS)

McClanahan, T. P.; Mitrofanov, I. G.; Boynton, W. V.; Chin, G.; Livengood, T.; Starr, R. D.; Evans, L. G.; Mazarico, E.; Smith, D. E.

2012-01-01

We present a method and preliminary results related to determining the spatial resolution of orbital neutron detectors using epithermal maps and differential topographic masks. Our technique is similar to coded aperture imaging methods for optimizing photonic signals in telescopes [I]. In that approach photon masks with known spatial patterns in a telescope aperature are used to systematically restrict incoming photons which minimizes interference and enhances photon signal to noise. Three orbital neutron detector systems with different stated spatial resolutions are evaluated. The differing spatial resolutions arise due different orbital altitudes and the use of neutron collimation techniques. 1) The uncollimated Lunar Prospector Neutron Spectrometer (LPNS) system has spatial resolution of 45km FWHM from approx. 30km altitude mission phase [2]. The Lunar Rennaissance Orbiter (LRO) Lunar Exploration Neutron Detector (LEND) with two detectors at 50km altitude evaluated here: 2) the collimated 10km FWHM spatial resolution detector CSETN and 3) LEND's collimated Sensor for Epithermal Neutrons (SETN). Thus providing two orbital altitudes to study factors of: uncollimated vs collimated and two average altitudes for their effect on fields-of-view.

Some effects of finite spatial resolution on skin friction measurements in turbulent boundary layers

NASA Technical Reports Server (NTRS)

Westphal, Russell V.

1988-01-01

The effects of finite spatial resolution often cause serious errors in measurements in turbulent boundary layers, with particularly large effects for measurements of fluctuating skin friction and velocities within the sublayer. However, classical analyses of finite spatial resolution effects have generally not accounted for the substantial inhomogeneity and anisotropy of near-wall turbulence. The present study has made use of results from recent computational simulations of wall-bounded turbulent flows to examine spatial resolution effects for measurements made at a wall using both single-sensor probes and those employing two sensing volumes in a V shape. Results are presented to show the effects of finite spatial resolution on a variety of quantitites deduced from the skin friction field.

Characterization and modelling of the spatially- and spectrally-varying point-spread function in hyperspectral imaging systems for computational correction of axial optical aberrations

NASA Astrophysics Data System (ADS)

Špiclin, Žiga; Bürmen, Miran; Pernuš, Franjo; Likar, Boštjan

2012-03-01

Spatial resolution of hyperspectral imaging systems can vary significantly due to axial optical aberrations that originate from wavelength-induced index-of-refraction variations of the imaging optics. For systems that have a broad spectral range, the spatial resolution will vary significantly both with respect to the acquisition wavelength and with respect to the spatial position within each spectral image. Variations of the spatial resolution can be effectively characterized as part of the calibration procedure by a local image-based estimation of the pointspread function (PSF) of the hyperspectral imaging system. The estimated PSF can then be used in the image deconvolution methods to improve the spatial resolution of the spectral images. We estimated the PSFs from the spectral images of a line grid geometric caliber. From individual line segments of the line grid, the PSF was obtained by a non-parametric estimation procedure that used an orthogonal series representation of the PSF. By using the non-parametric estimation procedure, the PSFs were estimated at different spatial positions and at different wavelengths. The variations of the spatial resolution were characterized by the radius and the fullwidth half-maximum of each PSF and by the modulation transfer function, computed from images of USAF1951 resolution target. The estimation and characterization of the PSFs and the image deconvolution based spatial resolution enhancement were tested on images obtained by a hyperspectral imaging system with an acousto-optic tunable filter in the visible spectral range. The results demonstrate that the spatial resolution of the acquired spectral images can be significantly improved using the estimated PSFs and image deconvolution methods.

Evaluating the Value of High Spatial Resolution in National Capacity Expansion Models using ReEDS

DOE Office of Scientific and Technical Information (OSTI.GOV)

Krishnan, Venkat; Cole, Wesley

2016-11-14

Power sector capacity expansion models (CEMs) have a broad range of spatial resolutions. This paper uses the Regional Energy Deployment System (ReEDS) model, a long-term national scale electric sector CEM, to evaluate the value of high spatial resolution for CEMs. ReEDS models the United States with 134 load balancing areas (BAs) and captures the variability in existing generation parameters, future technology costs, performance, and resource availability using very high spatial resolution data, especially for wind and solar modeled at 356 resource regions. In this paper we perform planning studies at three different spatial resolutions--native resolution (134 BAs), state-level, and NERCmore » region level--and evaluate how results change under different levels of spatial aggregation in terms of renewable capacity deployment and location, associated transmission builds, and system costs. The results are used to ascertain the value of high geographically resolved models in terms of their impact on relative competitiveness among renewable energy resources.« less

The Analysis of Burrows Recognition Accuracy in XINJIANG'S Pasture Area Based on Uav Visible Images with Different Spatial Resolution

NASA Astrophysics Data System (ADS)

Sun, D.; Zheng, J. H.; Ma, T.; Chen, J. J.; Li, X.

2018-04-01

The rodent disaster is one of the main biological disasters in grassland in northern Xinjiang. The eating and digging behaviors will cause the destruction of ground vegetation, which seriously affected the development of animal husbandry and grassland ecological security. UAV low altitude remote sensing, as an emerging technique with high spatial resolution, can effectively recognize the burrows. However, how to select the appropriate spatial resolution to monitor the calamity of the rodent disaster is the first problem we need to pay attention to. The purpose of this study is to explore the optimal spatial scale on identification of the burrows by evaluating the impact of different spatial resolution for the burrows identification accuracy. In this study, we shoot burrows from different flight heights to obtain visible images of different spatial resolution. Then an object-oriented method is used to identify the caves, and we also evaluate the accuracy of the classification. We found that the highest classification accuracy of holes, the average has reached more than 80 %. At the altitude of 24 m and the spatial resolution of 1cm, the accuracy of the classification is the highest We have created a unique and effective way to identify burrows by using UAVs visible images. We draw the following conclusion: the best spatial resolution of burrows recognition is 1 cm using DJI PHANTOM-3 UAV, and the improvement of spatial resolution does not necessarily lead to the improvement of classification accuracy. This study lays the foundation for future research and can be extended to similar studies elsewhere.

Experimental evaluation and basis function optimization of the spatially variant image-space PSF on the Ingenuity PET/MR scanner

DOE Office of Scientific and Technical Information (OSTI.GOV)

Kotasidis, Fotis A., E-mail: Fotis.Kotasidis@unige.ch; Zaidi, Habib; Geneva Neuroscience Centre, Geneva University, CH-1205 Geneva

2014-06-15

Purpose: The Ingenuity time-of-flight (TF) PET/MR is a recently developed hybrid scanner combining the molecular imaging capabilities of PET with the excellent soft tissue contrast of MRI. It is becoming common practice to characterize the system's point spread function (PSF) and understand its variation under spatial transformations to guide clinical studies and potentially use it within resolution recovery image reconstruction algorithms. Furthermore, due to the system's utilization of overlapping and spherical symmetric Kaiser-Bessel basis functions during image reconstruction, its image space PSF and reconstructed spatial resolution could be affected by the selection of the basis function parameters. Hence, a detailedmore » investigation into the multidimensional basis function parameter space is needed to evaluate the impact of these parameters on spatial resolution. Methods: Using an array of 12 × 7 printed point sources, along with a custom made phantom, and with the MR magnet on, the system's spatially variant image-based PSF was characterized in detail. Moreover, basis function parameters were systematically varied during reconstruction (list-mode TF OSEM) to evaluate their impact on the reconstructed resolution and the image space PSF. Following the spatial resolution optimization, phantom, and clinical studies were subsequently reconstructed using representative basis function parameters. Results: Based on the analysis and under standard basis function parameters, the axial and tangential components of the PSF were found to be almost invariant under spatial transformations (∼4 mm) while the radial component varied modestly from 4 to 6.7 mm. Using a systematic investigation into the basis function parameter space, the spatial resolution was found to degrade for basis functions with a large radius and small shape parameter. However, it was found that optimizing the spatial resolution in the reconstructed PET images, while having a good basis function superposition and keeping the image representation error to a minimum, is feasible, with the parameter combination range depending upon the scanner's intrinsic resolution characteristics. Conclusions: Using the printed point source array as a MR compatible methodology for experimentally measuring the scanner's PSF, the system's spatially variant resolution properties were successfully evaluated in image space. Overall the PET subsystem exhibits excellent resolution characteristics mainly due to the fact that the raw data are not under-sampled/rebinned, enabling the spatial resolution to be dictated by the scanner's intrinsic resolution and the image reconstruction parameters. Due to the impact of these parameters on the resolution properties of the reconstructed images, the image space PSF varies both under spatial transformations and due to basis function parameter selection. Nonetheless, for a range of basis function parameters, the image space PSF remains unaffected, with the range depending on the scanner's intrinsic resolution properties.« less

An evaluation of spatial resolution of a prototype proton CT scanner.

PubMed

Plautz, Tia E; Bashkirov, V; Giacometti, V; Hurley, R F; Johnson, R P; Piersimoni, P; Sadrozinski, H F-W; Schulte, R W; Zatserklyaniy, A

2016-12-01

To evaluate the spatial resolution of proton CT using both a prototype proton CT scanner and Monte Carlo simulations. A custom cylindrical edge phantom containing twelve tissue-equivalent inserts with four different compositions at varying radial displacements from the axis of rotation was developed for measuring the modulation transfer function (MTF) of a prototype proton CT scanner. Two scans of the phantom, centered on the axis of rotation, were obtained with a 200 MeV, low-intensity proton beam: one scan with steps of 4°, and one scan with the phantom continuously rotating. In addition, Monte Carlo simulations of the phantom scan were performed using scanners idealized to various degrees. The data were reconstructed using an iterative projection method with added total variation superiorization based on individual proton histories. Edge spread functions in the radial and azimuthal directions were obtained using the oversampling technique. These were then used to obtain the modulation transfer functions. The spatial resolution was defined by the 10% value of the modulation transfer function (MTF 10% ) in units of line pairs per centimeter (lp/cm). Data from the simulations were used to better understand the contributions of multiple Coulomb scattering in the phantom and the scanner hardware, as well as the effect of discretization of proton location. The radial spatial resolution of the prototype proton CT scanner depends on the total path length, W, of the proton in the phantom, whereas the azimuthal spatial resolution depends both on W and the position, u - , at which the most-likely path uncertainty is evaluated along the path. For protons contributing to radial spatial resolution, W varies with the radial position of the edge, whereas for protons contributing to azimuthal spatial resolution, W is approximately constant. For a pixel size of 0.625 mm, the radial spatial resolution of the image reconstructed from the fully idealized simulation data ranged between 6.31 ± 0.36 lp/cm for W = 197 mm i.e., close to the center of the phantom, and 13.79 ± 0.36 lp/cm for W = 97 mm, near the periphery of the phantom. The azimuthal spatial resolution ranged from 6.99 ± 0.23 lp/cm at u - = 75 mm (near the center) to 11.20 ± 0.26 lp/cm at u - = 20 mm (near the periphery). Multiple Coulomb scattering limits the radial spatial resolution for path lengths greater than approximately 130 mm, and the azimuthal spatial resolution for positions of evaluation greater than approximately 40 mm for W = 199 mm. The radial spatial resolution of the image reconstructed from data from the 4° stepped experimental scan ranged from 5.11 ± 0.61 lp/cm for W = 197 mm to 8.58 ± 0.50 lp/cm for W = 97 mm. In the azimuthal direction, the spatial resolution ranged from 5.37 ± 0.40 lp/cm at u - = 75 mm to 7.27 ± 0.39 lp/cm at u - = 20 mm. The continuous scan achieved the same spatial resolution as that of the stepped scan. Multiple Coulomb scattering in the phantom is the limiting physical factor of the achievable spatial resolution of proton CT; additional loss of spatial resolution in the prototype system is associated with scattering in the proton tracking system and inadequacies of the proton path estimate used in the iterative reconstruction algorithm. Improvement in spatial resolution may be achievable by improving the most likely path estimate by incorporating information about high and low density materials, and by minimizing multiple Coulomb scattering in the proton tracking system.

An evaluation of spatial resolution of a prototype proton CT scanner

PubMed Central

Plautz, Tia E.; Bashkirov, V.; Giacometti, V.; Hurley, R. F.; Piersimoni, P.; Sadrozinski, H. F.-W.; Schulte, R. W.; Zatserklyaniy, A.

2016-01-01

Purpose: To evaluate the spatial resolution of proton CT using both a prototype proton CT scanner and Monte Carlo simulations. Methods: A custom cylindrical edge phantom containing twelve tissue-equivalent inserts with four different compositions at varying radial displacements from the axis of rotation was developed for measuring the modulation transfer function (MTF) of a prototype proton CT scanner. Two scans of the phantom, centered on the axis of rotation, were obtained with a 200 MeV, low-intensity proton beam: one scan with steps of 4°, and one scan with the phantom continuously rotating. In addition, Monte Carlo simulations of the phantom scan were performed using scanners idealized to various degrees. The data were reconstructed using an iterative projection method with added total variation superiorization based on individual proton histories. Edge spread functions in the radial and azimuthal directions were obtained using the oversampling technique. These were then used to obtain the modulation transfer functions. The spatial resolution was defined by the 10% value of the modulation transfer function (MTF10%) in units of line pairs per centimeter (lp/cm). Data from the simulations were used to better understand the contributions of multiple Coulomb scattering in the phantom and the scanner hardware, as well as the effect of discretization of proton location. Results: The radial spatial resolution of the prototype proton CT scanner depends on the total path length, W, of the proton in the phantom, whereas the azimuthal spatial resolution depends both on W and the position, u−, at which the most-likely path uncertainty is evaluated along the path. For protons contributing to radial spatial resolution, W varies with the radial position of the edge, whereas for protons contributing to azimuthal spatial resolution, W is approximately constant. For a pixel size of 0.625 mm, the radial spatial resolution of the image reconstructed from the fully idealized simulation data ranged between 6.31 ± 0.36 lp/cm for W = 197 mm i.e., close to the center of the phantom, and 13.79 ± 0.36 lp/cm for W = 97 mm, near the periphery of the phantom. The azimuthal spatial resolution ranged from 6.99 ± 0.23 lp/cm at u− = 75 mm (near the center) to 11.20 ± 0.26 lp/cm at u− = 20 mm (near the periphery). Multiple Coulomb scattering limits the radial spatial resolution for path lengths greater than approximately 130 mm, and the azimuthal spatial resolution for positions of evaluation greater than approximately 40 mm for W = 199 mm. The radial spatial resolution of the image reconstructed from data from the 4° stepped experimental scan ranged from 5.11 ± 0.61 lp/cm for W = 197 mm to 8.58 ± 0.50 lp/cm for W = 97 mm. In the azimuthal direction, the spatial resolution ranged from 5.37 ± 0.40 lp/cm at u− = 75 mm to 7.27 ± 0.39 lp/cm at u− = 20 mm. The continuous scan achieved the same spatial resolution as that of the stepped scan. Conclusions: Multiple Coulomb scattering in the phantom is the limiting physical factor of the achievable spatial resolution of proton CT; additional loss of spatial resolution in the prototype system is associated with scattering in the proton tracking system and inadequacies of the proton path estimate used in the iterative reconstruction algorithm. Improvement in spatial resolution may be achievable by improving the most likely path estimate by incorporating information about high and low density materials, and by minimizing multiple Coulomb scattering in the proton tracking system. PMID:27908179

Identification of the Quorum-Sensing Target DNA Sequence and N-Acyl Homoserine Lactone Responsiveness of the Brucella abortus virB promoter▿

PubMed Central

Arocena, Gastón M.; Sieira, Rodrigo; Comerci, Diego J.; Ugalde, Rodolfo A.

2010-01-01

VjbR is a LuxR-type quorum-sensing (QS) regulator that plays an essential role in the virulence of the intracellular facultative pathogen Brucella, the causative agent of brucellosis. It was previously described that VjbR regulates a diverse group of genes, including the virB operon. The latter codes for a type IV secretion system (T4SS) that is central for the pathogenesis of Brucella. Although the regulatory role of VjbR on the virB promoter (PvirB) was extensively studied by different groups, the VjbR-binding site had not been identified so far. Here, we identified the target DNA sequence of VjbR in PvirB by DNase I footprinting analyses. Surprisingly, we observed that VjbR specifically recognizes a sequence that is identical to a half-binding site of the QS-related regulator MrtR of Mesorhizobium tianshanense. As shown by DNase I footprinting and electrophoretic mobility shift assays, generation of a palindromic MrtR-like-binding site in PvirB increased both the affinity and the stability of the VjbR-DNA complex, which confirmed that the QS regulator of Brucella is highly related to that of M. tianshanense. The addition of N-dodecanoyl homoserine lactone dissociated VjbR from the promoter, which confirmed previous reports that indicated a negative effect of this signal on the VjbR-mediated activation of PvirB. Our results provide new molecular evidence for the structure of the virB promoter and reveal unusual features of the QS target DNA sequence of the main regulator of virulence in Brucella. PMID:20400542

Brucella Modulates Secretory Trafficking via Multiple Type IV Secretion Effector Proteins

PubMed Central

Myeni, Sebenzile; Child, Robert; Ng, Tony W.; Kupko, John J.; Wehrly, Tara D.; Porcella, Stephen F.; Knodler, Leigh A.; Celli, Jean

2013-01-01

The intracellular pathogenic bacterium Brucella generates a replicative vacuole (rBCV) derived from the endoplasmic reticulum via subversion of the host cell secretory pathway. rBCV biogenesis requires the expression of the Type IV secretion system (T4SS) VirB, which is thought to translocate effector proteins that modulate membrane trafficking along the endocytic and secretory pathways. To date, only a few T4SS substrates have been identified, whose molecular functions remain unknown. Here, we used an in silico screen to identify putative T4SS effector candidate proteins using criteria such as limited homology in other bacterial genera, the presence of features similar to known VirB T4SS effectors, GC content and presence of eukaryotic-like motifs. Using β-lactamase and CyaA adenylate cyclase reporter assays, we identified eleven proteins translocated into host cells by Brucella, five in a VirB T4SS-dependent manner, namely BAB1_0678 (BspA), BAB1_0712 (BspB), BAB1_0847 (BspC), BAB1_1671 (BspE) and BAB1_1948 (BspF). A subset of the translocated proteins targeted secretory pathway compartments when ectopically expressed in HeLa cells, and the VirB effectors BspA, BspB and BspF inhibited protein secretion. Brucella infection also impaired host protein secretion in a process requiring BspA, BspB and BspF. Single or combined deletions of bspA, bspB and bspF affected Brucella ability to replicate in macrophages and persist in the liver of infected mice. Taken together, these findings demonstrate that Brucella modulates secretory trafficking via multiple T4SS effector proteins that likely act coordinately to promote Brucella pathogenesis. PMID:23950720

Characterization of three Agrobacterium tumefaciens avirulent mutants with chromosomal mutations that affect induction of vir genes.

PubMed

Metts, J; West, J; Doares, S H; Matthysse, A G

1991-02-01

Three Agrobacterium tumefaciens mutants with chromosomal mutations that affect bacterial virulence were isolated by transposon mutagenesis. Two of the mutants were avirulent on all hosts tested. The third mutant, Ivr-211, was a host range mutant which was avirulent on Bryophyllum diagremontiana, Nicotiana tabacum, N. debneyi, N. glauca, and Daucus carota but was virulent on Zinnia elegans and Lycopersicon esculentum (tomato). That the mutant phenotype was due to the transposon insertion was determined by cloning the DNA containing the transposon insertion and using the cloned DNA to replace the wild-type DNA in the parent bacterial strain by marker exchange. The transposon insertions in the three mutants mapped at three widely separated locations on the bacterial chromosome. The effects of the mutations on various steps in tumor formation were examined. All three mutants showed no alteration in binding to carrot cells. However, none of the mutants showed any induction of vir genes by acetosyringone under conditions in which the parent strain showed vir gene induction. When the mutant bacteria were examined for changes in surface components, it was found that all three of the mutants showed a similar alteration in lipopolysaccharide (LPS). LPS from the mutants was larger in size and more heavily saccharide substituted than LPS from the parent strain. Two of the mutants showed no detectable alteration in outer membrane and periplasmic space proteins. The third mutant, Ivr-225, was missing a 79-kDa surface peptide. The reason(s) for the failure of vir gene induction in these mutants and its relationship, if any, to the observed alteration in LPS are unknown.

Effects of vegetation heterogeneity and surface topography on spatial scaling of net primary productivity

NASA Astrophysics Data System (ADS)

Chen, J. M.; Chen, X.; Ju, W.

2013-03-01

Due to the heterogeneous nature of the land surface, spatial scaling is an inevitable issue in the development of land models coupled with low-resolution Earth system models (ESMs) for predicting land-atmosphere interactions and carbon-climate feedbacks. In this study, a simple spatial scaling algorithm is developed to correct errors in net primary productivity (NPP) estimates made at a coarse spatial resolution based on sub-pixel information of vegetation heterogeneity and surface topography. An eco-hydrological model BEPS-TerrainLab, which considers both vegetation and topographical effects on the vertical and lateral water flows and the carbon cycle, is used to simulate NPP at 30 m and 1 km resolutions for a 5700 km2 watershed with an elevation range from 518 m to 3767 m in the Qinling Mountain, Shaanxi Province, China. Assuming that the NPP simulated at 30 m resolution represents the reality and that at 1 km resolution is subject to errors due to sub-pixel heterogeneity, a spatial scaling index (SSI) is developed to correct the coarse resolution NPP values pixel by pixel. The agreement between the NPP values at these two resolutions is improved considerably from R2 = 0.782 to R2 = 0.884 after the correction. The mean bias error (MBE) in NPP modeled at the 1 km resolution is reduced from 14.8 g C m-2 yr-1 to 4.8 g C m-2 yr-1 in comparison with NPP modeled at 30 m resolution, where the mean NPP is 668 g C m-2 yr-1. The range of spatial variations of NPP at 30 m resolution is larger than that at 1 km resolution. Land cover fraction is the most important vegetation factor to be considered in NPP spatial scaling, and slope is the most important topographical factor for NPP spatial scaling especially in mountainous areas, because of its influence on the lateral water redistribution, affecting water table, soil moisture and plant growth. Other factors including leaf area index (LAI), elevation and aspect have small and additive effects on improving the spatial scaling between these two resolutions.

Effects of vegetation heterogeneity and surface topography on spatial scaling of net primary productivity

NASA Astrophysics Data System (ADS)

Chen, J. M.; Chen, X.; Ju, W.

2013-07-01

Due to the heterogeneous nature of the land surface, spatial scaling is an inevitable issue in the development of land models coupled with low-resolution Earth system models (ESMs) for predicting land-atmosphere interactions and carbon-climate feedbacks. In this study, a simple spatial scaling algorithm is developed to correct errors in net primary productivity (NPP) estimates made at a coarse spatial resolution based on sub-pixel information of vegetation heterogeneity and surface topography. An eco-hydrological model BEPS-TerrainLab, which considers both vegetation and topographical effects on the vertical and lateral water flows and the carbon cycle, is used to simulate NPP at 30 m and 1 km resolutions for a 5700 km2 watershed with an elevation range from 518 m to 3767 m in the Qinling Mountain, Shanxi Province, China. Assuming that the NPP simulated at 30 m resolution represents the reality and that at 1 km resolution is subject to errors due to sub-pixel heterogeneity, a spatial scaling index (SSI) is developed to correct the coarse resolution NPP values pixel by pixel. The agreement between the NPP values at these two resolutions is improved considerably from R2 = 0.782 to R2 = 0.884 after the correction. The mean bias error (MBE) in NPP modelled at the 1 km resolution is reduced from 14.8 g C m-2 yr-1 to 4.8 g C m-2 yr-1 in comparison with NPP modelled at 30 m resolution, where the mean NPP is 668 g C m-2 yr-1. The range of spatial variations of NPP at 30 m resolution is larger than that at 1 km resolution. Land cover fraction is the most important vegetation factor to be considered in NPP spatial scaling, and slope is the most important topographical factor for NPP spatial scaling especially in mountainous areas, because of its influence on the lateral water redistribution, affecting water table, soil moisture and plant growth. Other factors including leaf area index (LAI) and elevation have small and additive effects on improving the spatial scaling between these two resolutions.

DOE Office of Scientific and Technical Information (OSTI.GOV)

Li, Ke; Chen, Guang-Hong, E-mail: gchen7@wisc.edu; Garrett, John

Purpose: Statistical model based iterative reconstruction (MBIR) methods have been introduced to clinical CT systems and are being used in some clinical diagnostic applications. The purpose of this paper is to experimentally assess the unique spatial resolution characteristics of this nonlinear reconstruction method and identify its potential impact on the detectabilities and the associated radiation dose levels for specific imaging tasks. Methods: The thoracic section of a pediatric phantom was repeatedly scanned 50 or 100 times using a 64-slice clinical CT scanner at four different dose levels [CTDI{sub vol} =4, 8, 12, 16 (mGy)]. Both filtered backprojection (FBP) and MBIRmore » (Veo{sup ®}, GE Healthcare, Waukesha, WI) were used for image reconstruction and results were compared with one another. Eight test objects in the phantom with contrast levels ranging from 13 to 1710 HU were used to assess spatial resolution. The axial spatial resolution was quantified with the point spread function (PSF), while the z resolution was quantified with the slice sensitivity profile. Both were measured locally on the test objects and in the image domain. The dependence of spatial resolution on contrast and dose levels was studied. The study also features a systematic investigation of the potential trade-off between spatial resolution and locally defined noise and their joint impact on the overall image quality, which was quantified by the image domain-based channelized Hotelling observer (CHO) detectability index d′. Results: (1) The axial spatial resolution of MBIR depends on both radiation dose level and image contrast level, whereas it is supposedly independent of these two factors in FBP. The axial spatial resolution of MBIR always improved with an increasing radiation dose level and/or contrast level. (2) The axial spatial resolution of MBIR became equivalent to that of FBP at some transitional contrast level, above which MBIR demonstrated superior spatial resolution than FBP (and vice versa); the value of this transitional contrast highly depended on the dose level. (3) The PSFs of MBIR could be approximated as Gaussian functions with reasonably good accuracy. (4) Thez resolution of MBIR showed similar contrast and dose dependence. (5) Noise standard deviation assessed on the edges of objects demonstrated a trade-off with spatial resolution in MBIR. (5) When both spatial resolution and image noise were considered using the CHO analysis, MBIR led to significant improvement in the overall CT image quality for both high and low contrast detection tasks at both standard and low dose levels. Conclusions: Due to the intrinsic nonlinearity of the MBIR method, many well-known CT spatial resolution and noise properties have been modified. In particular, dose dependence and contrast dependence have been introduced to the spatial resolution of CT images by MBIR. The method has also introduced some novel noise-resolution trade-off not seen in traditional CT images. While the benefits of MBIR regarding the overall image quality, as demonstrated in this work, are significant, the optimal use of this method in clinical practice demands a thorough understanding of its unique physical characteristics.« less

High-resolution scanning precession electron diffraction: Alignment and spatial resolution.

PubMed

Barnard, Jonathan S; Johnstone, Duncan N; Midgley, Paul A

2017-03-01

Methods are presented for aligning the pivot point of a precessing electron probe in the scanning transmission electron microscope (STEM) and for assessing the spatial resolution in scanning precession electron diffraction (SPED) experiments. The alignment procedure is performed entirely in diffraction mode, minimising probe wander within the bright-field (BF) convergent beam electron diffraction (CBED) disk and is used to obtain high spatial resolution SPED maps. Through analysis of the power spectra of virtual bright-field images extracted from the SPED data, the precession-induced blur was measured as a function of precession angle. At low precession angles, SPED spatial resolution was limited by electronic noise in the scan coils; whereas at high precession angles SPED spatial resolution was limited by tilt-induced two-fold astigmatism caused by the positive spherical aberration of the probe-forming lens. Copyright © 2016 Elsevier B.V. All rights reserved.

Effect of Electric Field Gradient on Sub-nanometer Spatial Resolution of Tip-enhanced Raman Spectroscopy

PubMed Central

Meng, Lingyan; Yang, Zhilin; Chen, Jianing; Sun, Mengtao

2015-01-01

Tip-enhanced Raman spectroscopy (TERS) with sub-nanometer spatial resolution has been recently demonstrated experimentally. However, the physical mechanism underlying is still under discussion. Here we theoretically investigate the electric field gradient of a coupled tip-substrate system. Our calculations suggest that the ultra-high spatial resolution of TERS can be partially attributed to the electric field gradient effect owning to its tighter spatial confinement and sensitivity to the infrared (IR)-active of molecules. Particularly, in the case of TERS of flat-lying H2TBPP molecules,we find the electric field gradient enhancement is the dominating factor for the high spatial resolution, which qualitatively coincides with previous experimental report. Our theoretical study offers a new paradigm for understanding the mechanisms of the ultra-high spatial resolution demonstrated in tip-enhanced spectroscopy which is of importance but neglected. PMID:25784161

Spatial resolution properties of motion-compensated tomographic image reconstruction methods.

PubMed

Chun, Se Young; Fessler, Jeffrey A

2012-07-01

Many motion-compensated image reconstruction (MCIR) methods have been proposed to correct for subject motion in medical imaging. MCIR methods incorporate motion models to improve image quality by reducing motion artifacts and noise. This paper analyzes the spatial resolution properties of MCIR methods and shows that nonrigid local motion can lead to nonuniform and anisotropic spatial resolution for conventional quadratic regularizers. This undesirable property is akin to the known effects of interactions between heteroscedastic log-likelihoods (e.g., Poisson likelihood) and quadratic regularizers. This effect may lead to quantification errors in small or narrow structures (such as small lesions or rings) of reconstructed images. This paper proposes novel spatial regularization design methods for three different MCIR methods that account for known nonrigid motion. We develop MCIR regularization designs that provide approximately uniform and isotropic spatial resolution and that match a user-specified target spatial resolution. Two-dimensional PET simulations demonstrate the performance and benefits of the proposed spatial regularization design methods.

Development of a spatio-temporal disaggregation method (DisNDVI) for generating a time series of fine resolution NDVI images

NASA Astrophysics Data System (ADS)

Bindhu, V. M.; Narasimhan, B.

2015-03-01

Normalized Difference Vegetation Index (NDVI), a key parameter in understanding the vegetation dynamics, has high spatial and temporal variability. However, continuous monitoring of NDVI is not feasible at fine spatial resolution (<60 m) owing to the long revisit time needed by the satellites to acquire the fine spatial resolution data. Further, the study attains significance in the case of humid tropical regions of the earth, where the prevailing atmospheric conditions restrict availability of fine resolution cloud free images at a high temporal frequency. As an alternative to the lack of high resolution images, the current study demonstrates a novel disaggregation method (DisNDVI) which integrates the spatial information from a single fine resolution image and temporal information in terms of crop phenology from time series of coarse resolution images to generate estimates of NDVI at fine spatial and temporal resolution. The phenological variation of the pixels captured at the coarser scale provides the basis for relating the temporal variability of the pixel with the NDVI available at fine resolution. The proposed methodology was tested over a 30 km × 25 km spatially heterogeneous study area located in the south of Tamil Nadu, India. The robustness of the algorithm was assessed by an independent comparison of the disaggregated NDVI and observed NDVI obtained from concurrent Landsat ETM+ imagery. The results showed good spatial agreement across the study area dominated with agriculture and forest pixels, with a root mean square error of 0.05. The validation done at the coarser scale showed that disaggregated NDVI spatially averaged to 240 m compared well with concurrent MODIS NDVI at 240 m (R2 > 0.8). The validation results demonstrate the effectiveness of DisNDVI in improving the spatial and temporal resolution of NDVI images for utility in fine scale hydrological applications such as crop growth monitoring and estimation of evapotranspiration.

How Attention Affects Spatial Resolution

PubMed Central

Carrasco, Marisa; Barbot, Antoine

2015-01-01

We summarize and discuss a series of psychophysical studies on the effects of spatial covert attention on spatial resolution, our ability to discriminate fine patterns. Heightened resolution is beneficial in most, but not all, visual tasks. We show how endogenous attention (voluntary, goal driven) and exogenous attention (involuntary, stimulus driven) affect performance on a variety of tasks mediated by spatial resolution, such as visual search, crowding, acuity, and texture segmentation. Exogenous attention is an automatic mechanism that increases resolution regardless of whether it helps or hinders performance. In contrast, endogenous attention flexibly adjusts resolution to optimize performance according to task demands. We illustrate how psychophysical studies can reveal the underlying mechanisms of these effects and allow us to draw linking hypotheses with known neurophysiological effects of attention. PMID:25948640

Super-resolution optical microscopy for studying membrane structure and dynamics.

PubMed

Sezgin, Erdinc

2017-07-12

Investigation of cell membrane structure and dynamics requires high spatial and temporal resolution. The spatial resolution of conventional light microscopy is limited due to the diffraction of light. However, recent developments in microscopy enabled us to access the nano-scale regime spatially, thus to elucidate the nanoscopic structures in the cellular membranes. In this review, we will explain the resolution limit, address the working principles of the most commonly used super-resolution microscopy techniques and summarise their recent applications in the biomembrane field.

Comparison of alternative spatial resolutions in the application of a spatially distributed biogeochemical model over complex terrain

USGS Publications Warehouse

Turner, D.P.; Dodson, R.; Marks, D.

1996-01-01

Spatially distributed biogeochemical models may be applied over grids at a range of spatial resolutions, however, evaluation of potential errors and loss of information at relatively coarse resolutions is rare. In this study, a georeferenced database at the 1-km spatial resolution was developed to initialize and drive a process-based model (Forest-BGC) of water and carbon balance over a gridded 54976 km2 area covering two river basins in mountainous western Oregon. Corresponding data sets were also prepared at 10-km and 50-km spatial resolutions using commonly employed aggregation schemes. Estimates were made at each grid cell for climate variables including daily solar radiation, air temperature, humidity, and precipitation. The topographic structure, water holding capacity, vegetation type and leaf area index were likewise estimated for initial conditions. The daily time series for the climatic drivers was developed from interpolations of meteorological station data for the water year 1990 (1 October 1989-30 September 1990). Model outputs at the 1-km resolution showed good agreement with observed patterns in runoff and productivity. The ranges for model inputs at the 10-km and 50-km resolutions tended to contract because of the smoothed topography. Estimates for mean evapotranspiration and runoff were relatively insensitive to changing the spatial resolution of the grid whereas estimates of mean annual net primary production varied by 11%. The designation of a vegetation type and leaf area at the 50-km resolution often subsumed significant heterogeneity in vegetation, and this factor accounted for much of the difference in the mean values for the carbon flux variables. Although area wide means for model outputs were generally similar across resolutions, difference maps often revealed large areas of disagreement. Relatively high spatial resolution analyses of biogeochemical cycling are desirable from several perspectives and may be particularly important in the study of the potential impacts of climate change.

On the Use of Deep Convective Clouds to Calibrate AVHRR Data

NASA Technical Reports Server (NTRS)

Doelling, David R.; Nguyen, Louis; Minnis, Patrick

2004-01-01

Remote sensing of cloud and radiation properties from National Oceanic and Atmospheric Administration (NOAA) Advanced Very High Resolution Radiometer (AVHRR) satellites requires constant monitoring of the visible sensors. NOAA satellites do not have onboard visible calibration and need to be calibrated vicariously in order to determine the calibration and the degradation rate. Deep convective clouds are extremely bright and cold, are at the tropopause, have nearly a Lambertian reflectance, and provide predictable albedos. The use of deep convective clouds as calibration targets is developed into a calibration technique and applied to NOAA-16 and NOAA-17. The technique computes the relative gain drift over the life-span of the satellite. This technique is validated by comparing the gain drifts derived from inter-calibration of coincident AVHRR and Moderate-Resolution Imaging Spectroradiometer (MODIS) radiances. A ray-matched technique, which uses collocated, coincident, and co-angled pixel satellite radiance pairs is used to intercalibrate MODIS and AVHRR. The deep convective cloud calibration technique was found to be independent of solar zenith angle, by using well calibrated Visible Infrared Scanner (VIRS) radiances onboard the Tropical Rainfall Measuring Mission (TRMM) satellite, which precesses through all solar zenith angles in 23 days.

The fusion of satellite and UAV data: simulation of high spatial resolution band

NASA Astrophysics Data System (ADS)

Jenerowicz, Agnieszka; Siok, Katarzyna; Woroszkiewicz, Malgorzata; Orych, Agata

2017-10-01

Remote sensing techniques used in the precision agriculture and farming that apply imagery data obtained with sensors mounted on UAV platforms became more popular in the last few years due to the availability of low- cost UAV platforms and low- cost sensors. Data obtained from low altitudes with low- cost sensors can be characterised by high spatial and radiometric resolution but quite low spectral resolution, therefore the application of imagery data obtained with such technology is quite limited and can be used only for the basic land cover classification. To enrich the spectral resolution of imagery data acquired with low- cost sensors from low altitudes, the authors proposed the fusion of RGB data obtained with UAV platform with multispectral satellite imagery. The fusion is based on the pansharpening process, that aims to integrate the spatial details of the high-resolution panchromatic image with the spectral information of lower resolution multispectral or hyperspectral imagery to obtain multispectral or hyperspectral images with high spatial resolution. The key of pansharpening is to properly estimate the missing spatial details of multispectral images while preserving their spectral properties. In the research, the authors presented the fusion of RGB images (with high spatial resolution) obtained with sensors mounted on low- cost UAV platforms and multispectral satellite imagery with satellite sensors, i.e. Landsat 8 OLI. To perform the fusion of UAV data with satellite imagery, the simulation of the panchromatic bands from RGB data based on the spectral channels linear combination, was conducted. Next, for simulated bands and multispectral satellite images, the Gram-Schmidt pansharpening method was applied. As a result of the fusion, the authors obtained several multispectral images with very high spatial resolution and then analysed the spatial and spectral accuracies of processed images.

Large-watershed flood simulation and forecasting based on different-resolution distributed hydrological model

NASA Astrophysics Data System (ADS)

Li, J.

2017-12-01

Large-watershed flood simulation and forecasting is very important for a distributed hydrological model in the application. There are some challenges including the model's spatial resolution effect, model performance and accuracy and so on. To cope with the challenge of the model's spatial resolution effect, different model resolution including 1000m*1000m, 600m*600m, 500m*500m, 400m*400m, 200m*200m were used to build the distributed hydrological model—Liuxihe model respectively. The purpose is to find which one is the best resolution for Liuxihe model in Large-watershed flood simulation and forecasting. This study sets up a physically based distributed hydrological model for flood forecasting of the Liujiang River basin in south China. Terrain data digital elevation model (DEM), soil type and land use type are downloaded from the website freely. The model parameters are optimized by using an improved Particle Swarm Optimization(PSO) algorithm; And parameter optimization could reduce the parameter uncertainty that exists for physically deriving model parameters. The different model resolution (200m*200m—1000m*1000m ) are proposed for modeling the Liujiang River basin flood with the Liuxihe model in this study. The best model's spatial resolution effect for flood simulation and forecasting is 200m*200m.And with the model's spatial resolution reduction, the model performance and accuracy also become worse and worse. When the model resolution is 1000m*1000m, the flood simulation and forecasting result is the worst, also the river channel divided based on this resolution is differs from the actual one. To keep the model with an acceptable performance, minimum model spatial resolution is needed. The suggested threshold model spatial resolution for modeling the Liujiang River basin flood is a 500m*500m grid cell, but the model spatial resolution with a 200m*200m grid cell is recommended in this study to keep the model at a best performance.

Analysis of the impact of spatial resolution on land/water classifications using high-resolution aerial imagery

USGS Publications Warehouse

Enwright, Nicholas M.; Jones, William R.; Garber, Adrienne L.; Keller, Matthew J.

2014-01-01

Long-term monitoring efforts often use remote sensing to track trends in habitat or landscape conditions over time. To most appropriately compare observations over time, long-term monitoring efforts strive for consistency in methods. Thus, advances and changes in technology over time can present a challenge. For instance, modern camera technology has led to an increasing availability of very high-resolution imagery (i.e. submetre and metre) and a shift from analogue to digital photography. While numerous studies have shown that image resolution can impact the accuracy of classifications, most of these studies have focused on the impacts of comparing spatial resolution changes greater than 2 m. Thus, a knowledge gap exists on the impacts of minor changes in spatial resolution (i.e. submetre to about 1.5 m) in very high-resolution aerial imagery (i.e. 2 m resolution or less). This study compared the impact of spatial resolution on land/water classifications of an area dominated by coastal marsh vegetation in Louisiana, USA, using 1:12,000 scale colour-infrared analogue aerial photography (AAP) scanned at four different dot-per-inch resolutions simulating ground sample distances (GSDs) of 0.33, 0.54, 1, and 2 m. Analysis of the impact of spatial resolution on land/water classifications was conducted by exploring various spatial aspects of the classifications including density of waterbodies and frequency distributions in waterbody sizes. This study found that a small-magnitude change (1–1.5 m) in spatial resolution had little to no impact on the amount of water classified (i.e. percentage mapped was less than 1.5%), but had a significant impact on the mapping of very small waterbodies (i.e. waterbodies ≤ 250 m2). These findings should interest those using temporal image classifications derived from very high-resolution aerial photography as a component of long-term monitoring programs.

Polymeric spatial resolution test patterns for mass spectrometry imaging using nano-thermal analysis with atomic force microscopy

DOE PAGES

Tai, Tamin; Kertesz, Vilmos; Lin, Ming -Wei; ...

2017-05-11

As the spatial resolution of mass spectrometry imaging technologies has begun to reach into the nanometer regime, finding readily available or easily made resolution reference materials has become particularly challenging for molecular imaging purposes. This study describes the fabrication, characterization and use of vertical line array polymeric spatial resolution test patterns for nano-thermal analysis/atomic force microscopy/mass spectrometry chemical imaging.

Polymeric spatial resolution test patterns for mass spectrometry imaging using nano-thermal analysis with atomic force microscopy

DOE Office of Scientific and Technical Information (OSTI.GOV)

Tai, Tamin; Kertesz, Vilmos; Lin, Ming -Wei

As the spatial resolution of mass spectrometry imaging technologies has begun to reach into the nanometer regime, finding readily available or easily made resolution reference materials has become particularly challenging for molecular imaging purposes. This study describes the fabrication, characterization and use of vertical line array polymeric spatial resolution test patterns for nano-thermal analysis/atomic force microscopy/mass spectrometry chemical imaging.

High density event-related potential data acquisition in cognitive neuroscience.

PubMed

Slotnick, Scott D

2010-04-16

Functional magnetic resonance imaging (fMRI) is currently the standard method of evaluating brain function in the field of Cognitive Neuroscience, in part because fMRI data acquisition and analysis techniques are readily available. Because fMRI has excellent spatial resolution but poor temporal resolution, this method can only be used to identify the spatial location of brain activity associated with a given cognitive process (and reveals virtually nothing about the time course of brain activity). By contrast, event-related potential (ERP) recording, a method that is used much less frequently than fMRI, has excellent temporal resolution and thus can track rapid temporal modulations in neural activity. Unfortunately, ERPs are under utilized in Cognitive Neuroscience because data acquisition techniques are not readily available and low density ERP recording has poor spatial resolution. In an effort to foster the increased use of ERPs in Cognitive Neuroscience, the present article details key techniques involved in high density ERP data acquisition. Critically, high density ERPs offer the promise of excellent temporal resolution and good spatial resolution (or excellent spatial resolution if coupled with fMRI), which is necessary to capture the spatial-temporal dynamics of human brain function.

High-efficiency Agrobacterium-mediated transformation of Norway spruce (Picea abies) and loblolly pine (Pinus taeda)

NASA Technical Reports Server (NTRS)

Wenck, A. R.; Quinn, M.; Whetten, R. W.; Pullman, G.; Sederoff, R.; Brown, C. S. (Principal Investigator)

1999-01-01

Agrobacterium-mediated gene transfer is the method of choice for many plant biotechnology laboratories; however, large-scale use of this organism in conifer transformation has been limited by difficult propagation of explant material, selection efficiencies and low transformation frequency. We have analyzed co-cultivation conditions and different disarmed strains of Agrobacterium to improve transformation. Additional copies of virulence genes were added to three common disarmed strains. These extra virulence genes included either a constitutively active virG or extra copies of virG and virB, both from pTiBo542. In experiments with Norway spruce, we increased transformation efficiencies 1000-fold from initial experiments where little or no transient expression was detected. Over 100 transformed lines expressing the marker gene beta-glucuronidase (GUS) were generated from rapidly dividing embryogenic suspension-cultured cells co-cultivated with Agrobacterium. GUS activity was used to monitor transient expression and to further test lines selected on kanamycin-containing medium. In loblolly pine, transient expression increased 10-fold utilizing modified Agrobacterium strains. Agrobacterium-mediated gene transfer is a useful technique for large-scale generation of transgenic Norway spruce and may prove useful for other conifer species.

Hyperspectral imagery super-resolution by compressive sensing inspired dictionary learning and spatial-spectral regularization.

PubMed

Huang, Wei; Xiao, Liang; Liu, Hongyi; Wei, Zhihui

2015-01-19

Due to the instrumental and imaging optics limitations, it is difficult to acquire high spatial resolution hyperspectral imagery (HSI). Super-resolution (SR) imagery aims at inferring high quality images of a given scene from degraded versions of the same scene. This paper proposes a novel hyperspectral imagery super-resolution (HSI-SR) method via dictionary learning and spatial-spectral regularization. The main contributions of this paper are twofold. First, inspired by the compressive sensing (CS) framework, for learning the high resolution dictionary, we encourage stronger sparsity on image patches and promote smaller coherence between the learned dictionary and sensing matrix. Thus, a sparsity and incoherence restricted dictionary learning method is proposed to achieve higher efficiency sparse representation. Second, a variational regularization model combing a spatial sparsity regularization term and a new local spectral similarity preserving term is proposed to integrate the spectral and spatial-contextual information of the HSI. Experimental results show that the proposed method can effectively recover spatial information and better preserve spectral information. The high spatial resolution HSI reconstructed by the proposed method outperforms reconstructed results by other well-known methods in terms of both objective measurements and visual evaluation.

The structure and rainfall features of Tropical Cyclone Rammasun (2002)

NASA Astrophysics Data System (ADS)

Ma, Leiming; Duan, Yihong; Zhu, Yongti

2004-12-01

Tropical Rainfall Measuring Mission (TRMM) data [TRMM Microwave Imager/Precipitation Radar/Visible and Infrared Scanner (TMI/PR/VIRS)] and a numerical model are used to investigate the structure and rainfall features of Tropical Cyclone (TC) Rammasun (2002). Based on the analysis of TRMM data, which are diagnosed together with NCEP/AVN [Aviation (global model)] analysis data, some typical features of TC structure and rainfall are preliminary discovered. Since the limitations of TRMM data are considered for their time resolution and coverage, the world observed by TRMM at several moments cannot be taken as the representation of the whole period of the TC lifecycle, therefore the picture should be reproduced by a numerical model of high quality. To better understand the structure and rainfall features of TC Rammasun, a numerical simulation is carried out with mesoscale model MM5 in which the validations have been made with the data of TRMM and NCEP/AVN analysis.

Enhancing resolution and contrast in second-harmonic generation microscopy using an advanced maximum likelihood estimation restoration method

NASA Astrophysics Data System (ADS)

Sivaguru, Mayandi; Kabir, Mohammad M.; Gartia, Manas Ranjan; Biggs, David S. C.; Sivaguru, Barghav S.; Sivaguru, Vignesh A.; Berent, Zachary T.; Wagoner Johnson, Amy J.; Fried, Glenn A.; Liu, Gang Logan; Sadayappan, Sakthivel; Toussaint, Kimani C.

2017-02-01

Second-harmonic generation (SHG) microscopy is a label-free imaging technique to study collagenous materials in extracellular matrix environment with high resolution and contrast. However, like many other microscopy techniques, the actual spatial resolution achievable by SHG microscopy is reduced by out-of-focus blur and optical aberrations that degrade particularly the amplitude of the detectable higher spatial frequencies. Being a two-photon scattering process, it is challenging to define a point spread function (PSF) for the SHG imaging modality. As a result, in comparison with other two-photon imaging systems like two-photon fluorescence, it is difficult to apply any PSF-engineering techniques to enhance the experimental spatial resolution closer to the diffraction limit. Here, we present a method to improve the spatial resolution in SHG microscopy using an advanced maximum likelihood estimation (AdvMLE) algorithm to recover the otherwise degraded higher spatial frequencies in an SHG image. Through adaptation and iteration, the AdvMLE algorithm calculates an improved PSF for an SHG image and enhances the spatial resolution by decreasing the full-width-at-halfmaximum (FWHM) by 20%. Similar results are consistently observed for biological tissues with varying SHG sources, such as gold nanoparticles and collagen in porcine feet tendons. By obtaining an experimental transverse spatial resolution of 400 nm, we show that the AdvMLE algorithm brings the practical spatial resolution closer to the theoretical diffraction limit. Our approach is suitable for adaptation in micro-nano CT and MRI imaging, which has the potential to impact diagnosis and treatment of human diseases.

Demonstration of Airborne Wide Area Assessment Technologies at Pueblo Precision Bombing Ranges, Colorado. Hyperspectral Imaging, Version 2.0

DTIC Science & Technology

2007-09-27

the spatial and spectral resolution ...variety of geological and vegetation mapping efforts, the Hymap sensor offered the best available combination of spectral and spatial resolution , signal... The limitations of the technology currently relate to spatial and spectral resolution and geo- correction accuracy. Secondly, HSI datasets

The effect of spatial resolution upon cloud optical property retrievals. I - Optical thickness

NASA Technical Reports Server (NTRS)

Feind, Rand E.; Christopher, Sundar A.; Welch, Ronald M.

1992-01-01

High spectral and spatial resolution Airborne Visible/Infrared Imaging Spectrometer (AVIRIS) imagery is used to study the effects of spatial resolution upon fair weather cumulus cloud optical thickness retrievals. As a preprocessing step, a variation of the Gao and Goetz three-band ratio technique is used to discriminate clouds from the background. The combination of the elimination of cloud shadow pixels and using the first derivative of the histogram allows for accurate cloud edge discrimination. The data are progressively degraded from 20 m to 960 m spatial resolution. The results show that retrieved cloud area increases with decreasing spatial resolution. The results also show that there is a monotonic decrease in retrieved cloud optical thickness with decreasing spatial resolution. It is also demonstrated that the use of a single, monospectral reflectance threshold is inadequate for identifying cloud pixels in fair weather cumulus scenes and presumably in any inhomogeneous cloud field. Cloud edges have a distribution of reflectance thresholds. The incorrect identification of cloud edges significantly impacts the accurate retrieval of cloud optical thickness values.

Spatial resolution of a spherical x-ray crystal spectrometer at various magnifications

DOE PAGES

Gao, Lan; Hill, K. W.; Bitter, M.; ...

2016-08-23

Here, a high spatial resolution of a few μm is often required for probing small-scale high-energy-density plasmas using high resolution x-ray imaging spectroscopy. This resolution can be achieved by adjusting system magnification to overcome the inherent limitation of the detector pixel size. Laboratory experiments on investigating the relation between spatial resolution and system magnification for a spherical crystal spectrometer are presented. Tungsten Lβ 2 rays from a tungsten-target micro-focus x-ray tube were diffracted by a Ge 440 crystal, which was spherically bent to a radius of 223 mm, and imaged onto an x-ray CCD with 13-μm pixel size. The source-to-crystalmore » (p) and crystal-to-detector (q) distances were varied to produce spatial magnifications ( M = q/p) ranging from 2 to 10. The inferred instrumental spatial width reduces with increasing system magnification M. However, the experimental measurement at each M is larger than the theoretical value of pixel size divided by M. Future work will focus on investigating possible broadening mechanisms that limit the spatial resolution.« less

Emotional cues enhance the attentional effects on spatial and temporal resolution.

PubMed

Bocanegra, Bruno R; Zeelenberg, René

2011-12-01

In the present study, we demonstrated that the emotional significance of a spatial cue enhances the effect of covert attention on spatial and temporal resolution (i.e., our ability to discriminate small spatial details and fast temporal flicker). Our results indicated that fearful face cues, as compared with neutral face cues, enhanced the attentional benefits in spatial resolution but also enhanced the attentional deficits in temporal resolution. Furthermore, we observed that the overall magnitudes of individuals' attentional effects correlated strongly with the magnitude of the emotion × attention interaction effect. Combined, these findings provide strong support for the idea that emotion enhances the strength of a cue's attentional response.

HESS Opinions: The need for process-based evaluation of large-domain hyper-resolution models

NASA Astrophysics Data System (ADS)

Melsen, Lieke A.; Teuling, Adriaan J.; Torfs, Paul J. J. F.; Uijlenhoet, Remko; Mizukami, Naoki; Clark, Martyn P.

2016-03-01

A meta-analysis on 192 peer-reviewed articles reporting on applications of the variable infiltration capacity (VIC) model in a distributed way reveals that the spatial resolution at which the model is applied has increased over the years, while the calibration and validation time interval has remained unchanged. We argue that the calibration and validation time interval should keep pace with the increase in spatial resolution in order to resolve the processes that are relevant at the applied spatial resolution. We identified six time concepts in hydrological models, which all impact the model results and conclusions. Process-based model evaluation is particularly relevant when models are applied at hyper-resolution, where stakeholders expect credible results both at a high spatial and temporal resolution.

HESS Opinions: The need for process-based evaluation of large-domain hyper-resolution models

NASA Astrophysics Data System (ADS)

Melsen, L. A.; Teuling, A. J.; Torfs, P. J. J. F.; Uijlenhoet, R.; Mizukami, N.; Clark, M. P.

2015-12-01

A meta-analysis on 192 peer-reviewed articles reporting applications of the Variable Infiltration Capacity (VIC) model in a distributed way reveals that the spatial resolution at which the model is applied has increased over the years, while the calibration and validation time interval has remained unchanged. We argue that the calibration and validation time interval should keep pace with the increase in spatial resolution in order to resolve the processes that are relevant at the applied spatial resolution. We identified six time concepts in hydrological models, which all impact the model results and conclusions. Process-based model evaluation is particularly relevant when models are applied at hyper-resolution, where stakeholders expect credible results both at a high spatial and temporal resolution.

Effect of spatial resolution on remote sensing estimation of total evaporation in the uMngeni catchment, South Africa

NASA Astrophysics Data System (ADS)

Shoko, Cletah; Clark, David; Mengistu, Michael; Dube, Timothy; Bulcock, Hartley

2015-01-01

This study evaluated the effect of two readily available multispectral sensors: the newly launched 30 m spatial resolution Landsat 8 and the long-serving 1000 m moderate resolution imaging spectroradiometer (MODIS) datasets in the spatial representation of total evaporation in the heterogeneous uMngeni catchment, South Africa, using the surface energy balance system model. The results showed that sensor spatial resolution plays a critical role in the accurate estimation of energy fluxes and total evaporation across a heterogeneous catchment. Landsat 8 estimates showed better spatial representation of the biophysical parameters and total evaporation for different land cover types, due to the relatively higher spatial resolution compared to the coarse spatial resolution MODIS sensor. Moreover, MODIS failed to capture the spatial variations of total evaporation estimates across the catchment. Analysis of variance (ANOVA) results showed that MODIS-based total evaporation estimates did not show any significant differences across different land cover types (one-way ANOVA; F1.924=1.412, p=0.186). However, Landsat 8 images yielded significantly different estimates between different land cover types (one-way ANOVA; F1.993=5.185, p<0.001). The validation results showed that Landsat 8 estimates were more comparable to eddy covariance (EC) measurements than the MODIS-based total evaporation estimates. EC measurement on May 23, 2013, was 3.8 mm/day, whereas the Landsat 8 estimate on the same day was 3.6 mm/day, with MODIS showing significantly lower estimates of 2.3 mm/day. The findings of this study underscore the importance of spatial resolution in estimating spatial variations of total evaporation at the catchment scale, thus, they provide critical information on the relevance of the readily available remote sensing products in water resources management in data-scarce environments.

Spatial resolution limits for the isotropic-3D PET detector X’tal cube

NASA Astrophysics Data System (ADS)

Yoshida, Eiji; Tashima, Hideaki; Hirano, Yoshiyuki; Inadama, Naoko; Nishikido, Fumihiko; Murayama, Hideo; Yamaya, Taiga

2013-11-01

Positron emission tomography (PET) has become a popular imaging method in metabolism, neuroscience, and molecular imaging. For dedicated human brain and small animal PET scanners, high spatial resolution is needed to visualize small objects. To improve the spatial resolution, we are developing the X’tal cube, which is our new PET detector to achieve isotropic 3D positioning detectability. We have shown that the X’tal cube can achieve 1 mm3 uniform crystal identification performance with the Anger-type calculation even at the block edges. We plan to develop the X’tal cube with even smaller 3D grids for sub-millimeter crystal identification. In this work, we investigate spatial resolution of a PET scanner based on the X’tal cube using Monte Carlo simulations for predicting resolution performance in smaller 3D grids. For spatial resolution evaluation, a point source emitting 511 keV photons was simulated by GATE for all physical processes involved in emission and interaction of positrons. We simulated two types of animal PET scanners. The first PET scanner had a detector ring 14.6 cm in diameter composed of 18 detectors. The second PET scanner had a detector ring 7.8 cm in diameter composed of 12 detectors. After the GATE simulations, we converted the interacting 3D position information to digitalized positions for realistic segmented crystals. We simulated several X’tal cubes with cubic crystals from (0.5 mm)3 to (2 mm)3 in size. Also, for evaluating the effect of DOI resolution, we simulated several X’tal cubes with crystal thickness from (0.5 mm)3 to (9 mm)3. We showed that sub-millimeter spatial resolution was possible using cubic crystals smaller than (1.0 mm)3 even with the assumed physical processes. Also, the weighted average spatial resolutions of both PET scanners with (0.5 mm)3 cubic crystals were 0.53 mm (14.6 cm ring diameter) and 0.48 mm (7.8 cm ring diameter). For the 7.8 cm ring diameter, spatial resolution with 0.5×0.5×1.0 mm3 crystals was improved 39% relative to the (1 mm)3 cubic crystals. On the other hand, spatial resolution with (0.5 mm)3 cubic crystals was improved 47% relative to the (1 mm)3 cubic crystals. The X’tal cube promises better spatial resolution for the 3D crystal block with isotropic resolution.

Mineralogical Composition of the Different Types of Bright Deposits on Vesta

NASA Technical Reports Server (NTRS)

Zambon, F.; Capaccioni, F.; DeSanctis, M. C.; Ammannito, E.; Li, J.-Y.; Longobardo, A.; Mittlefehldt, D. W.; Palomba, E.; Pieters, C. M.; Schroeder, S. E.;

Evaluating the Impact of Spatial Resolution of Landsat Predictors on the Accuracy of Biomass Models for Large-area Estimation Across the Eastern USA

NASA Astrophysics Data System (ADS)

Deo, R. K.; Domke, G. M.; Russell, M.; Woodall, C. W.

2017-12-01

Landsat data have been widely used to support strategic forest inventory and management decisions despite the limited success of passive optical remote sensing for accurate estimation of aboveground biomass (AGB). The archive of publicly available Landsat data, available at 30-m spatial resolutions since 1984, has been a valuable resource for cost-effective large-area estimation of AGB to inform national requirements such as for the US national greenhouse gas inventory (NGHGI). In addition, other optical satellite data such as MODIS imagery of wider spatial coverage and higher temporal resolution are enriching the domain of spatial predictors for regional scale mapping of AGB. Because NGHGIs require national scale AGB information and there are tradeoffs in the prediction accuracy versus operational efficiency of Landsat, this study evaluated the impact of various resolutions of Landsat predictors on the accuracy of regional AGB models across three different sites in the eastern USA: Maine, Pennsylvania-New Jersey, and South Carolina. We used recent national forest inventory (NFI) data with numerous Landsat-derived predictors at ten different spatial resolutions ranging from 30 to 1000 m to understand the optimal spatial resolution of the optical data for enhanced spatial inventory of AGB for NGHGI reporting. Ten generic spatial models at different spatial resolutions were developed for all sites and large-area estimates were evaluated (i) at the county-level against the independent designed-based estimates via the US NFI Evalidator tool and (ii) within a large number of strips ( 1 km wide) predicted via LiDAR metrics at a high spatial resolution. The county-level estimates by the Evalidator and Landsat models were statistically equivalent and produced coefficients of determination (R2) above 0.85 that varied with sites and resolution of predictors. The mean and standard deviation of county-level estimates followed increasing and decreasing trends, respectively, with models of decreasing resolutions. The Landsat-based total AGB estimates within the strips against the total AGB obtained using LiDAR metrics did not differ significantly and were within ±15 Mg/ha for each of the sites. We conclude that the optical satellite data at resolutions up to 1000 m provide acceptable accuracy for the US' NGHGI.

Spatial resolution limitation of liquid crystal spatial light modulator

NASA Astrophysics Data System (ADS)

Wang, Xinghua; Wang, Bin; McManamon, Paul F., III; Pouch, John J.; Miranda, Felix A.; Anderson, James E.; Bos, Philip J.

2004-10-01

The effect of fringing electric fields in a liquid crystal (LC) Optical Phased Array (OPA), also referred to as a spatial light modulator (SLM), is a governing factor that determines the diffraction efficiency (DE) of the LC OPA for high resolution spatial phase modulation. In this article, the fringing field effect in a high resolution LC OPA is studied by accurate modeling the DE of the LC blazed gratings by LC director simulation and Finite Difference Time Domain (FDTD) simulation. Influence factors that contribute significantly to the DE are discussed. Such results provide fundamental understanding for high resolution LC devices.

Impacts of spatial resolution and representation of flow connectivity on large-scale simulation of floods

NASA Astrophysics Data System (ADS)

Mateo, Cherry May R.; Yamazaki, Dai; Kim, Hyungjun; Champathong, Adisorn; Vaze, Jai; Oki, Taikan

2017-10-01

Global-scale river models (GRMs) are core tools for providing consistent estimates of global flood hazard, especially in data-scarce regions. Due to former limitations in computational power and input datasets, most GRMs have been developed to use simplified representations of flow physics and run at coarse spatial resolutions. With increasing computational power and improved datasets, the application of GRMs to finer resolutions is becoming a reality. To support development in this direction, the suitability of GRMs for application to finer resolutions needs to be assessed. This study investigates the impacts of spatial resolution and flow connectivity representation on the predictive capability of a GRM, CaMa-Flood, in simulating the 2011 extreme flood in Thailand. Analyses show that when single downstream connectivity (SDC) is assumed, simulation results deteriorate with finer spatial resolution; Nash-Sutcliffe efficiency coefficients decreased by more than 50 % between simulation results at 10 km resolution and 1 km resolution. When multiple downstream connectivity (MDC) is represented, simulation results slightly improve with finer spatial resolution. The SDC simulations result in excessive backflows on very flat floodplains due to the restrictive flow directions at finer resolutions. MDC channels attenuated these effects by maintaining flow connectivity and flow capacity between floodplains in varying spatial resolutions. While a regional-scale flood was chosen as a test case, these findings should be universal and may have significant impacts on large- to global-scale simulations, especially in regions where mega deltas exist.These results demonstrate that a GRM can be used for higher resolution simulations of large-scale floods, provided that MDC in rivers and floodplains is adequately represented in the model structure.

A technique for enhancing and matching the resolution of microwave measurements from the SSM/I instrument

NASA Technical Reports Server (NTRS)

Robinson, Wayne D.; Kummerrow, Christian; Olson, William S.

1992-01-01

A correction technique is presented for matching the resolution of all the frequencies of the satelliteborne Special Sensor Microwave/Imager (SSM/I) to the about-25-km spatial resolution of the 37-GHz channel. This entails, on the one hand, the enhancement of the spatial resolution of the 19- and 22-GHz channels, and on the other, the degrading of that of the 85-GHz channel. The Backus and Gilbert (1970) approach is found to yield sufficient spatial resolution to render such a correction worthwhile.

High spatial resolution distributed optical fiber dynamic strain sensor with enhanced frequency and strain resolution.

PubMed

Masoudi, Ali; Newson, Trevor P

2017-01-15

A distributed optical fiber dynamic strain sensor with high spatial and frequency resolution is demonstrated. The sensor, which uses the ϕ-OTDR interrogation technique, exhibited a higher sensitivity thanks to an improved optical arrangement and a new signal processing procedure. The proposed sensing system is capable of fully quantifying multiple dynamic perturbations along a 5 km long sensing fiber with a frequency and spatial resolution of 5 Hz and 50 cm, respectively. The strain resolution of the sensor was measured to be 40 nε.

Study of satellite retrieved aerosol optical depth spatial resolution effect on particulate matter concentration prediction

NASA Astrophysics Data System (ADS)

Strandgren, J.; Mei, L.; Vountas, M.; Burrows, J. P.; Lyapustin, A.; Wang, Y.

2014-10-01

The Aerosol Optical Depth (AOD) spatial resolution effect is investigated for the linear correlation between satellite retrieved AOD and ground level particulate matter concentrations (PM2.5). The Multi-Angle Implementation of Atmospheric Correction (MAIAC) algorithm was developed for the Moderate Resolution Imaging Spectroradiometer (MODIS) for obtaining AOD with a high spatial resolution of 1 km and provides a good dataset for the study of the AOD spatial resolution effect on the particulate matter concentration prediction. 946 Environmental Protection Agency (EPA) ground monitoring stations across the contiguous US have been used to investigate the linear correlation between AOD and PM2.5 using AOD at different spatial resolutions (1, 3 and 10 km) and for different spatial scales (urban scale, meso-scale and continental scale). The main conclusions are: (1) for both urban, meso- and continental scale the correlation between PM2.5 and AOD increased significantly with increasing spatial resolution of the AOD, (2) the correlation between AOD and PM2.5 decreased significantly as the scale of study region increased for the eastern part of the US while vice versa for the western part of the US, (3) the correlation between PM2.5 and AOD is much more stable and better over the eastern part of the US compared to western part due to the surface characteristics and atmospheric conditions like the fine mode fraction.

Employing temporal self-similarity across the entire time domain in computed tomography reconstruction

PubMed Central

Kazantsev, D.; Van Eyndhoven, G.; Lionheart, W. R. B.; Withers, P. J.; Dobson, K. J.; McDonald, S. A.; Atwood, R.; Lee, P. D.

2015-01-01

There are many cases where one needs to limit the X-ray dose, or the number of projections, or both, for high frame rate (fast) imaging. Normally, it improves temporal resolution but reduces the spatial resolution of the reconstructed data. Fortunately, the redundancy of information in the temporal domain can be employed to improve spatial resolution. In this paper, we propose a novel regularizer for iterative reconstruction of time-lapse computed tomography. The non-local penalty term is driven by the available prior information and employs all available temporal data to improve the spatial resolution of each individual time frame. A high-resolution prior image from the same or a different imaging modality is used to enhance edges which remain stationary throughout the acquisition time while dynamic features tend to be regularized spatially. Effective computational performance together with robust improvement in spatial and temporal resolution makes the proposed method a competitive tool to state-of-the-art techniques. PMID:25939621

Geochemical Mapping of 4 Vesta Begins

NASA Technical Reports Server (NTRS)

Prettyman, Thomas H.; Feldman, William C.; Forni, Olivier; Joy, Steven P.; Lawrence, David J.; LeCorre, Lucille; Mafi, Joseph N.; McCord, Thomas B.; McCoy, Timothy J.; McSween, Harry Y.;

Change of spatial information under rescaling: A case study using multi-resolution image series

NASA Astrophysics Data System (ADS)

Chen, Weirong; Henebry, Geoffrey M.

Spatial structure in imagery depends on a complicated interaction between the observational regime and the types and arrangements of entities within the scene that the image portrays. Although block averaging of pixels has commonly been used to simulate coarser resolution imagery, relatively little attention has been focused on the effects of simple rescaling on spatial structure and the explanation and a possible solution to the problem. Yet, if there are significant differences in spatial variance between rescaled and observed images, it may affect the reliability of retrieved biogeophysical quantities. To investigate these issues, a nested series of high spatial resolution digital imagery was collected at a research site in eastern Nebraska in 2001. An airborne Kodak DCS420IR camera acquired imagery at three altitudes, yielding nominal spatial resolutions ranging from 0.187 m to 1 m. The red and near infrared (NIR) bands of the co-registered image series were normalized using pseudo-invariant features, and the normalized difference vegetation index (NDVI) was calculated. Plots of grain sorghum planted in orthogonal crop row orientations were extracted from the image series. The finest spatial resolution data were then rescaled by averaging blocks of pixels to produce a rescaled image series that closely matched the spatial resolution of the observed image series. Spatial structures of the observed and rescaled image series were characterized using semivariogram analysis. Results for NDVI and its component bands show, as expected, that decreasing spatial resolution leads to decreasing spatial variability and increasing spatial dependence. However, compared to the observed data, the rescaled images contain more persistent spatial structure that exhibits limited variation in both spatial dependence and spatial heterogeneity. Rescaling via simple block averaging fails to consider the effect of scene object shape and extent on spatial information. As the features portrayed by pixels are equally weighted regardless of the shape and extent of the underlying scene objects, the rescaled image retains more of the original spatial information than would occur through direct observation at a coarser sensor spatial resolution. In contrast, for the observed images, due to the effect of the modulation transfer function (MTF) of the imaging system, high frequency features like edges are blurred or lost as the pixel size increases, resulting in greater variation in spatial structure. Successive applications of a low-pass spatial convolution filter are shown to mimic a MTF. Accordingly, it is recommended that such a procedure be applied prior to rescaling by simple block averaging, if insufficient image metadata exist to replicate the net MTF of the imaging system, as might be expected in land cover change analysis studies using historical imagery.

Satellite image fusion based on principal component analysis and high-pass filtering.

PubMed

Metwalli, Mohamed R; Nasr, Ayman H; Allah, Osama S Farag; El-Rabaie, S; Abd El-Samie, Fathi E

2010-06-01

This paper presents an integrated method for the fusion of satellite images. Several commercial earth observation satellites carry dual-resolution sensors, which provide high spatial resolution or simply high-resolution (HR) panchromatic (pan) images and low-resolution (LR) multi-spectral (MS) images. Image fusion methods are therefore required to integrate a high-spectral-resolution MS image with a high-spatial-resolution pan image to produce a pan-sharpened image with high spectral and spatial resolutions. Some image fusion methods such as the intensity, hue, and saturation (IHS) method, the principal component analysis (PCA) method, and the Brovey transform (BT) method provide HR MS images, but with low spectral quality. Another family of image fusion methods, such as the high-pass-filtering (HPF) method, operates on the basis of the injection of high frequency components from the HR pan image into the MS image. This family of methods provides less spectral distortion. In this paper, we propose the integration of the PCA method and the HPF method to provide a pan-sharpened MS image with superior spatial resolution and less spectral distortion. The experimental results show that the proposed fusion method retains the spectral characteristics of the MS image and, at the same time, improves the spatial resolution of the pan-sharpened image.

High-Spatial and High-Mass Resolution Imaging of Surface Metabolites of Arabidopsis thaliana by Laser Desorption-Ionization Mass Spectrometry Using Colloidal Silver

DOE Office of Scientific and Technical Information (OSTI.GOV)

Jun, Ji Hyun; Song, Zhihong; Liu, Zhenjiu

High-spatial resolution and high-mass resolution techniques are developed and adopted for the mass spectrometric imaging of epicuticular lipids on the surface of Arabidopsis thaliana. Single cell level spatial resolution of {approx}12 {micro}m was achieved by reducing the laser beam size by using an optical fiber with 25 {micro}m core diameter in a vacuum matrix-assisted laser desorption ionization-linear ion trap (vMALDI-LTQ) mass spectrometer and improved matrix application using an oscillating capillary nebulizer. Fine chemical images of a whole flower were visualized in this high spatial resolution showing substructure of an anther and single pollen grains at the stigma and anthers. Themore » LTQ-Orbitrap with a MALDI ion source was adopted to achieve MS imaging in high mass resolution. Specifically, isobaric silver ion adducts of C29 alkane (m/z 515.3741) and C28 aldehyde (m/z 515.3377), indistinguishable in low-resolution LTQ, can now be clearly distinguished and their chemical images could be separately constructed. In the application to roots, the high spatial resolution allowed molecular MS imaging of secondary roots and the high mass resolution allowed direct identification of lipid metabolites on root surfaces.« less

The spatial resolution of a rotating gamma camera tomographic facility.

PubMed

Webb, S; Flower, M A; Ott, R J; Leach, M O; Inamdar, R

1983-12-01

An important feature determining the spatial resolution in transverse sections reconstructed by convolution and back-projection is the frequency filter corresponding to the convolution kernel. Equations have been derived giving the theoretical spatial resolution, for a perfect detector and noise-free data, using four filter functions. Experiments have shown that physical constraints will always limit the resolution that can be achieved with a given system. The experiments indicate that the region of the frequency spectrum between KN/2 and KN where KN is the Nyquist frequency does not contribute significantly to resolution. In order to investigate the physical effect of these filter functions, the spatial resolution of reconstructed images obtained with a GE 400T rotating gamma camera has been measured. The results obtained serve as an aid to choosing appropriate reconstruction filters for use with a rotating gamma camera system.

A high time and spatial resolution MRPC designed for muon tomography

NASA Astrophysics Data System (ADS)

Shi, L.; Wang, Y.; Huang, X.; Wang, X.; Zhu, W.; Li, Y.; Cheng, J.

2014-12-01

A prototype of cosmic muon scattering tomography system has been set up in Tsinghua University in Beijing. Multi-gap Resistive Plate Chamber (MRPC) is used in the system to get the muon tracks. Compared with other detectors, MRPC can not only provide the track but also the Time of Flight (ToF) between two detectors which can estimate the energy of particles. To get a more accurate track and higher efficiency of the tomography system, a new type of high time and two-dimensional spatial resolution MRPC has been developed. A series of experiments have been done to measure the efficiency, time resolution and spatial resolution. The results show that the efficiency can reach 95% and its time resolution is around 65 ps. The cluster size is around 4 and the spatial resolution can reach 200 μ m.

150-μm Spatial Resolution Using Photon-Counting Detector Computed Tomography Technology: Technical Performance and First Patient Images.

PubMed

Leng, Shuai; Rajendran, Kishore; Gong, Hao; Zhou, Wei; Halaweish, Ahmed F; Henning, Andre; Kappler, Steffen; Baer, Matthias; Fletcher, Joel G; McCollough, Cynthia H

2018-05-28

The aims of this study were to quantitatively assess two new scan modes on a photon-counting detector computed tomography system, each designed to maximize spatial resolution, and to qualitatively demonstrate potential clinical impact using patient data. This Health Insurance Portability Act-compliant study was approved by our institutional review board. Two high-spatial-resolution scan modes (Sharp and UHR) were evaluated using phantoms to quantify spatial resolution and image noise, and results were compared with the standard mode (Macro). Patients were scanned using a conventional energy-integrating detector scanner and the photon-counting detector scanner using the same radiation dose. In first patient images, anatomic details were qualitatively evaluated to demonstrate potential clinical impact. Sharp and UHR modes had a 69% and 87% improvement in in-plane spatial resolution, respectively, compared with Macro mode (10% modulation-translation-function values of 16.05, 17.69, and 9.48 lp/cm, respectively). The cutoff spatial frequency of the UHR mode (32.4 lp/cm) corresponded to a limiting spatial resolution of 150 μm. The full-width-at-half-maximum values of the section sensitivity profiles were 0.41, 0.44, and 0.67 mm for the thinnest image thickness for each mode (0.25, 0.25, and 0.5 mm, respectively). At the same in-plane spatial resolution, Sharp and UHR images had up to 15% lower noise than Macro images. Patient images acquired in Sharp mode demonstrated better delineation of fine anatomic structures compared with Macro mode images. Phantom studies demonstrated superior resolution and noise properties for the Sharp and UHR modes relative to the standard Macro mode and patient images demonstrated the potential benefit of these scan modes for clinical practice.

The Analytical Limits of Modeling Short Diffusion Timescales

NASA Astrophysics Data System (ADS)

Bradshaw, R. W.; Kent, A. J.

2016-12-01

Chemical and isotopic zoning in minerals is widely used to constrain the timescales of magmatic processes such as magma mixing and crystal residence, etc. via diffusion modeling. Forward modeling of diffusion relies on fitting diffusion profiles to measured compositional gradients. However, an individual measurement is essentially an average composition for a segment of the gradient defined by the spatial resolution of the analysis. Thus there is the potential for the analytical spatial resolution to limit the timescales that can be determined for an element of given diffusivity, particularly where the scale of the gradient approaches that of the measurement. Here we use a probabilistic modeling approach to investigate the effect of analytical spatial resolution on estimated timescales from diffusion modeling. Our method investigates how accurately the age of a synthetic diffusion profile can be obtained by modeling an "unknown" profile derived from discrete sampling of the synthetic compositional gradient at a given spatial resolution. We also include the effects of analytical uncertainty and the position of measurements relative to the diffusion gradient. We apply this method to the spatial resolutions of common microanalytical techniques (LA-ICP-MS, SIMS, EMP, NanoSIMS). Our results confirm that for a given diffusivity, higher spatial resolution gives access to shorter timescales, and that each analytical spacing has a minimum timescale, below which it overestimates the timescale. For example, for Ba diffusion in plagioclase at 750 °C timescales are accurate (within 20%) above 10, 100, 2,600, and 71,000 years at 0.3, 1, 5, and 25 mm spatial resolution, respectively. For Sr diffusion in plagioclase at 750 °C, timescales are accurate above 0.02, 0.2, 4, and 120 years at the same spatial resolutions. Our results highlight the importance of selecting appropriate analytical techniques to estimate accurate diffusion-based timescales.

Spatial and Angular Resolution Enhancement of Light Fields Using Convolutional Neural Networks

NASA Astrophysics Data System (ADS)

Gul, M. Shahzeb Khan; Gunturk, Bahadir K.

2018-05-01

Light field imaging extends the traditional photography by capturing both spatial and angular distribution of light, which enables new capabilities, including post-capture refocusing, post-capture aperture control, and depth estimation from a single shot. Micro-lens array (MLA) based light field cameras offer a cost-effective approach to capture light field. A major drawback of MLA based light field cameras is low spatial resolution, which is due to the fact that a single image sensor is shared to capture both spatial and angular information. In this paper, we present a learning based light field enhancement approach. Both spatial and angular resolution of captured light field is enhanced using convolutional neural networks. The proposed method is tested with real light field data captured with a Lytro light field camera, clearly demonstrating spatial and angular resolution improvement.

Spatial and Angular Resolution Enhancement of Light Fields Using Convolutional Neural Networks.

PubMed

Gul, M Shahzeb Khan; Gunturk, Bahadir K

2018-05-01

Light field imaging extends the traditional photography by capturing both spatial and angular distribution of light, which enables new capabilities, including post-capture refocusing, post-capture aperture control, and depth estimation from a single shot. Micro-lens array (MLA) based light field cameras offer a cost-effective approach to capture light field. A major drawback of MLA based light field cameras is low spatial resolution, which is due to the fact that a single image sensor is shared to capture both spatial and angular information. In this paper, we present a learning based light field enhancement approach. Both spatial and angular resolution of captured light field is enhanced using convolutional neural networks. The proposed method is tested with real light field data captured with a Lytro light field camera, clearly demonstrating spatial and angular resolution improvement.

Multi-Resolution Analysis of MODIS and ASTER Satellite Data for Water Classification

DTIC Science & Technology

2006-09-01

spectral bands, but also with different pixel resolutions . The overall goal... the total water surface. Due to the constraint that high spatial resolution satellite images are low temporal resolution , one needs a reliable method...at 15 m resolution , were processed. We used MODIS reflectance data from MOD02 Level 1B data. Even the spatial resolution of the 1240 nm

Definition of the Spatial Resolution of X-Ray Microanalysis in Thin Foils

NASA Technical Reports Server (NTRS)

Williams, D. B.; Michael, J. R.; Goldstein, J. I.; Romig, A. D., Jr.

1992-01-01

The spatial resolution of X-ray microanalysis in thin foils is defined in terms of the incident electron beam diameter and the average beam broadening. The beam diameter is defined as the full width tenth maximum of a Gaussian intensity distribution. The spatial resolution is calculated by a convolution of the beam diameter and the average beam broadening. This definition of the spatial resolution can be related simply to experimental measurements of composition profiles across interphase interfaces. Monte Carlo calculations using a high-speed parallel supercomputer show good agreement with this definition of the spatial resolution and calculations based on this definition. The agreement is good over a range of specimen thicknesses and atomic number, but is poor when excessive beam tailing distorts the assumed Gaussian electron intensity distributions. Beam tailing occurs in low-Z materials because of fast secondary electrons and in high-Z materials because of plural scattering.

DOE Office of Scientific and Technical Information (OSTI.GOV)

Krishnan, Venkat; Cole, Wesley

Power sector capacity expansion models (CEMs) have a broad range of spatial resolutions. This paper uses the Regional Energy Deployment System (ReEDS) model, a long-term national scale electric sector CEM, to evaluate the value of high spatial resolution for CEMs. ReEDS models the United States with 134 load balancing areas (BAs) and captures the variability in existing generation parameters, future technology costs, performance, and resource availability using very high spatial resolution data, especially for wind and solar modeled at 356 resource regions. In this paper we perform planning studies at three different spatial resolutions--native resolution (134 BAs), state-level, and NERCmore » region level--and evaluate how results change under different levels of spatial aggregation in terms of renewable capacity deployment and location, associated transmission builds, and system costs. The results are used to ascertain the value of high geographically resolved models in terms of their impact on relative competitiveness among renewable energy resources.« less

Easy way to determine quantitative spatial resolution distribution for a general inverse problem

NASA Astrophysics Data System (ADS)

An, M.; Feng, M.

2013-12-01

The spatial resolution computation of a solution was nontrivial and more difficult than solving an inverse problem. Most geophysical studies, except for tomographic studies, almost uniformly neglect the calculation of a practical spatial resolution. In seismic tomography studies, a qualitative resolution length can be indicatively given via visual inspection of the restoration of a synthetic structure (e.g., checkerboard tests). An effective strategy for obtaining quantitative resolution length is to calculate Backus-Gilbert resolution kernels (also referred to as a resolution matrix) by matrix operation. However, not all resolution matrices can provide resolution length information, and the computation of resolution matrix is often a difficult problem for very large inverse problems. A new class of resolution matrices, called the statistical resolution matrices (An, 2012, GJI), can be directly determined via a simple one-parameter nonlinear inversion performed based on limited pairs of random synthetic models and their inverse solutions. The total procedure were restricted to forward/inversion processes used in the real inverse problem and were independent of the degree of inverse skill used in the solution inversion. Spatial resolution lengths can be directly given during the inversion. Tests on 1D/2D/3D model inversion demonstrated that this simple method can be at least valid for a general linear inverse problem.

Towards breaking the spatial resolution barriers: An optical flow and super-resolution approach for sea ice motion estimation

NASA Astrophysics Data System (ADS)

Petrou, Zisis I.; Xian, Yang; Tian, YingLi

2018-04-01

Estimation of sea ice motion at fine scales is important for a number of regional and local level applications, including modeling of sea ice distribution, ocean-atmosphere and climate dynamics, as well as safe navigation and sea operations. In this study, we propose an optical flow and super-resolution approach to accurately estimate motion from remote sensing images at a higher spatial resolution than the original data. First, an external example learning-based super-resolution method is applied on the original images to generate higher resolution versions. Then, an optical flow approach is applied on the higher resolution images, identifying sparse correspondences and interpolating them to extract a dense motion vector field with continuous values and subpixel accuracies. Our proposed approach is successfully evaluated on passive microwave, optical, and Synthetic Aperture Radar data, proving appropriate for multi-sensor applications and different spatial resolutions. The approach estimates motion with similar or higher accuracy than the original data, while increasing the spatial resolution of up to eight times. In addition, the adopted optical flow component outperforms a state-of-the-art pattern matching method. Overall, the proposed approach results in accurate motion vectors with unprecedented spatial resolutions of up to 1.5 km for passive microwave data covering the entire Arctic and 20 m for radar data, and proves promising for numerous scientific and operational applications.

Use of UAS remote sensing data to estimate crop ET at high spatial resolution

USDA-ARS?s Scientific Manuscript database

Estimation of the spatial distribution of evapotranspiration (ET) based on remotely sensed imagery has become useful for managing water in irrigated agricultural at various spatial scales. However, data acquired by conventional satellites (Landsat, ASTER, etc.) lack the spatial resolution to capture...

Sub-millimetre DOI detector based on monolithic LYSO and digital SiPM for a dedicated small-animal PET system.

PubMed

Marcinkowski, Radosław; Mollet, Pieter; Van Holen, Roel; Vandenberghe, Stefaan

2016-03-07

The mouse model is widely used in a vast range of biomedical and preclinical studies. Thanks to the ability to detect and quantify biological processes at the molecular level in vivo, PET has become a well-established tool in these investigations. However, the need to visualize and quantify radiopharmaceuticals in anatomic structures of millimetre or less requires good spatial resolution and sensitivity from small-animal PET imaging systems.In previous work we have presented a proof-of-concept of a dedicated high-resolution small-animal PET scanner based on thin monolithic scintillator crystals and Digital Photon Counter photosensor. The combination of thin monolithic crystals and MLE positioning algorithm resulted in an excellent spatial resolution of 0.7 mm uniform in the entire field of view (FOV). However, the limitation of the scanner was its low sensitivity due to small thickness of the lutetium-yttrium oxyorthosilicate (LYSO) crystals (2 mm).Here we present an improved detector design for a small-animal PET system that simultaneously achieves higher sensitivity and sustains a sub-millimetre spatial resolution. The proposed detector consists of a 5 mm thick monolithic LYSO crystal optically coupled to a Digital Photon Counter. Mean nearest neighbour (MNN) positioning combined with depth of interaction (DOI) decoding was employed to achieve sub-millimetre spatial resolution. To evaluate detector performance the intrinsic spatial resolution, energy resolution and coincidence resolving time (CRT) were measured. The average intrinsic spatial resolution of the detector was 0.60 mm full-width-at-half-maximum (FWHM). A DOI resolution of 1.66 mm was achieved. The energy resolution was 23% FWHM at 511 keV and CRT of 529 ps were measured. The improved detector design overcomes the sensitivity limitation of the previous design by increasing the nominal sensitivity of the detector block and retains an excellent intrinsic spatial resolution.

The robustness of T2 value as a trabecular structural index at multiple spatial resolutions of 7 Tesla MRI.

PubMed

Lee, D K; Song, Y K; Park, B W; Cho, H P; Yeom, J S; Cho, G; Cho, H

2018-04-15

To evaluate the robustness of MR transverse relaxation times of trabecular bone from spin-echo and gradient-echo acquisitions at multiple spatial resolutions of 7 T. The effects of MRI resolutions to T 2 and T2* of trabecular bone were numerically evaluated by Monte Carlo simulations. T 2 , T2*, and trabecular structural indices from multislice multi-echo and UTE acquisitions were measured in defatted human distal femoral condyles on a 7 T scanner. Reference structural indices were extracted from high-resolution microcomputed tomography images. For bovine knee trabecular samples with intact bone marrow, T 2 and T2* were measured by degrading spatial resolutions on a 7 T system. In the defatted trabecular experiment, both T 2 and T2* values showed strong ( |r| > 0.80) correlations with trabecular spacing and number, at a high spatial resolution of 125 µm 3 . The correlations for MR image-segmentation-derived structural indices were significantly degraded ( |r| < 0.50) at spatial resolutions of 250 and 500 µm 3 . The correlations for T2* rapidly dropped ( |r| < 0.50) at a spatial resolution of 500 µm 3 , whereas those for T 2 remained consistently high ( |r| > 0.85). In the bovine trabecular experiments with intact marrow, low-resolution (approximately 1 mm 3 , 2 minutes) T 2 values did not shorten ( |r| > 0.95 with respect to approximately 0.4 mm 3 , 11 minutes) and maintained consistent correlations ( |r| > 0.70) with respect to trabecular spacing (turbo spin echo, 22.5 minutes). T 2 measurements of trabeculae at 7 T are robust with degrading spatial resolution and may be preferable in assessing trabecular spacing index with reduced scan time, when high-resolution 3D micro-MRI is difficult to obtain. © 2018 International Society for Magnetic Resonance in Medicine.

On the assessment of spatial resolution of PET systems with iterative image reconstruction

NASA Astrophysics Data System (ADS)

Gong, Kuang; Cherry, Simon R.; Qi, Jinyi

2016-03-01

Spatial resolution is an important metric for performance characterization in PET systems. Measuring spatial resolution is straightforward with a linear reconstruction algorithm, such as filtered backprojection, and can be performed by reconstructing a point source scan and calculating the full-width-at-half-maximum (FWHM) along the principal directions. With the widespread adoption of iterative reconstruction methods, it is desirable to quantify the spatial resolution using an iterative reconstruction algorithm. However, the task can be difficult because the reconstruction algorithms are nonlinear and the non-negativity constraint can artificially enhance the apparent spatial resolution if a point source image is reconstructed without any background. Thus, it was recommended that a background should be added to the point source data before reconstruction for resolution measurement. However, there has been no detailed study on the effect of the point source contrast on the measured spatial resolution. Here we use point source scans from a preclinical PET scanner to investigate the relationship between measured spatial resolution and the point source contrast. We also evaluate whether the reconstruction of an isolated point source is predictive of the ability of the system to resolve two adjacent point sources. Our results indicate that when the point source contrast is below a certain threshold, the measured FWHM remains stable. Once the contrast is above the threshold, the measured FWHM monotonically decreases with increasing point source contrast. In addition, the measured FWHM also monotonically decreases with iteration number for maximum likelihood estimate. Therefore, when measuring system resolution with an iterative reconstruction algorithm, we recommend using a low-contrast point source and a fixed number of iterations.

Full Spatial Resolution Infrared Sounding Application in the Preconvection Environment

NASA Astrophysics Data System (ADS)

Liu, C.; Liu, G.; Lin, T.

2013-12-01

Advanced infrared (IR) sounders such as the Atmospheric Infrared Sounder (AIRS) and Infrared Atmospheric Sounding Interferometer (IASI) provide atmospheric temperature and moisture profiles with high vertical resolution and high accuracy in preconvection environments. The derived atmospheric stability indices such as convective available potential energy (CAPE) and lifted index (LI) from advanced IR soundings can provide critical information 1 ; 6 h before the development of severe convective storms. Three convective storms are selected for the evaluation of applying AIRS full spatial resolution soundings and the derived products on providing warning information in the preconvection environments. In the first case, the AIRS full spatial resolution soundings revealed local extremely high atmospheric instability 3 h ahead of the convection on the leading edge of a frontal system, while the second case demonstrates that the extremely high atmospheric instability is associated with the local development of severe thunderstorm in the following hours. The third case is a local severe storm that occurred on 7-8 August 2010 in Zhou Qu, China, which caused more than 1400 deaths and left another 300 or more people missing. The AIRS full spatial resolution LI product shows the atmospheric instability 3.5 h before the storm genesis. The CAPE and LI from AIRS full spatial resolution and operational AIRS/AMSU soundings along with Geostationary Operational Environmental Satellite (GOES) Sounder derived product image (DPI) products were analyzed and compared. Case studies show that full spatial resolution AIRS retrievals provide more useful warning information in the preconvection environments for determining favorable locations for convective initiation (CI) than do the coarser spatial resolution operational soundings and lower spectral resolution GOES Sounder retrievals. The retrieved soundings are also tested in a regional data assimilation WRF 3D-var system to evaluate the potential assist in the NWP model.

Ultra high spatial and temporal resolution breast imaging at 7T.

PubMed

van de Bank, B L; Voogt, I J; Italiaander, M; Stehouwer, B L; Boer, V O; Luijten, P R; Klomp, D W J

2013-04-01

There is a need to obtain higher specificity in the detection of breast lesions using MRI. To address this need, Dynamic Contrast-Enhanced (DCE) MRI has been combined with other structural and functional MRI techniques. Unfortunately, owing to time constraints structural images at ultra-high spatial resolution can generally not be obtained during contrast uptake, whereas the relatively low spatial resolution of functional imaging (e.g. diffusion and perfusion) limits the detection of small lesions. To be able to increase spatial as well as temporal resolution simultaneously, the sensitivity of MR detection needs to increase as well as the ability to effectively accelerate the acquisition. The required gain in signal-to-noise ratio (SNR) can be obtained at 7T, whereas acceleration can be obtained with high-density receiver coil arrays. In this case, morphological imaging can be merged with DCE-MRI, and other functional techniques can be obtained at higher spatial resolution, and with less distortion [e.g. Diffusion Weighted Imaging (DWI)]. To test the feasibility of this concept, we developed a unilateral breast coil for 7T. It comprises a volume optimized dual-channel transmit coil combined with a 30-channel receive array coil. The high density of small coil elements enabled efficient acceleration in any direction to acquire ultra high spatial resolution MRI of close to 0.6 mm isotropic detail within a temporal resolution of 69 s, high spatial resolution MRI of 1.5 mm isotropic within an ultra high temporal resolution of 6.7 s and low distortion DWI at 7T, all validated in phantoms, healthy volunteers and a patient with a lesion in the right breast classified as Breast Imaging Reporting and Data System (BI-RADS) IV. Copyright © 2012 John Wiley & Sons, Ltd.

High Efficiency Multi-shot Interleaved Spiral-In/Out Acquisition for High Resolution BOLD fMRI

PubMed Central

Jung, Youngkyoo; Samsonov, Alexey A.; Liu, Thomas T.; Buracas, Giedrius T.

2012-01-01

Growing demand for high spatial resolution BOLD functional MRI faces a challenge of the spatial resolution vs. coverage or temporal resolution tradeoff, which can be addressed by methods that afford increased acquisition efficiency. Spiral acquisition trajectories have been shown to be superior to currently prevalent echo-planar imaging in terms of acquisition efficiency, and high spatial resolution can be achieved by employing multiple-shot spiral acquisition. The interleaved spiral in-out trajectory is preferred over spiral-in due to increased BOLD signal CNR and higher acquisition efficiency than that of spiral-out or non-interleaved spiral in/out trajectories (1), but to date applicability of the multi-shot interleaved spiral in-out for high spatial resolution imaging has not been studied. Herein we propose multi-shot interleaved spiral in-out acquisition and investigate its applicability for high spatial resolution BOLD fMRI. Images reconstructed from interleaved spiral-in and -out trajectories possess artifacts caused by differences in T2* decay, off-resonance and k-space errors associated with the two trajectories. We analyze the associated errors and demonstrate that application of conjugate phase reconstruction and spectral filtering can substantially mitigate these image artifacts. After applying these processing steps, the multishot interleaved spiral in-out pulse sequence yields high BOLD CNR images at in-plane resolution below 1x1 mm while preserving acceptable temporal resolution (4 s) and brain coverage (15 slices of 2 mm thickness). Moreover, this method yields sufficient BOLD CNR at 1.5 mm isotropic resolution for detection of activation in hippocampus associated with cognitive tasks (Stern memory task). The multi-shot interleaved spiral in-out acquisition is a promising technique for high spatial resolution BOLD fMRI applications. PMID:23023395

The influence of spatial resolution and smoothing on the detectability of resting-state and task fMRI.

PubMed

Molloy, Erin K; Meyerand, Mary E; Birn, Rasmus M

2014-02-01

Functional MRI blood oxygen level-dependent (BOLD) signal changes can be subtle, motivating the use of imaging parameters and processing strategies that maximize the temporal signal-to-noise ratio (tSNR) and thus the detection power of neuronal activity-induced fluctuations. Previous studies have shown that acquiring data at higher spatial resolutions results in greater percent BOLD signal changes, and furthermore that spatially smoothing higher resolution fMRI data improves tSNR beyond that of data originally acquired at a lower resolution. However, higher resolution images come at the cost of increased acquisition time, and the number of image volumes also influences detectability. The goal of our study is to determine how the detection power of neuronally induced BOLD fluctuations acquired at higher spatial resolutions and then spatially smoothed compares to data acquired at the lower resolutions with the same imaging duration. The number of time points acquired during a given amount of imaging time is a practical consideration given the limited ability of certain populations to lie still in the MRI scanner. We compare acquisitions at three different in-plane spatial resolutions (3.50×3.50mm(2), 2.33×2.33mm(2), 1.75×1.75mm(2)) in terms of their tSNR, contrast-to-noise ratio, and the power to detect both task-related activation and resting-state functional connectivity. The impact of SENSE acceleration, which speeds up acquisition time increasing the number of images collected, is also evaluated. Our results show that after spatially smoothing the data to the same intrinsic resolution, lower resolution acquisitions have a slightly higher detection power of task-activation in some, but not all, brain areas. There were no significant differences in functional connectivity as a function of resolution after smoothing. Similarly, the reduced tSNR of fMRI data acquired with a SENSE factor of 2 is offset by the greater number of images acquired, resulting in few significant differences in detection power of either functional activation or connectivity after spatial smoothing. © 2013.

Mapping Chinese tallow with color-infrared photography

USGS Publications Warehouse

Ramsey, Elijah W.; Nelson, G.A.; Sapkota, S.K.; Seeger, E.B.; Martella, K.D.

2002-01-01

Airborne color-infrared photography (CIR) (1:12,000 scale) was used to map localized occurrences of the widespread and aggressive Chinese tallow (Sapium sebiferum), an invasive species. Photography was collected during senescence when Chinese tallow's bright red leaves presented a high spectral contrast within the native bottomland hardwood and upland forests and marsh land-cover types. Mapped occurrences were conservative because not all senescing tallow leaves are bright red simultaneously. To simulate low spectral but high spatial resolution satellite/airborne image and digital video data, the CIR photography was transformed into raster images at spatial resolutions approximating 0.5 in and 1.0 m. The image data were then spectrally classified for the occurrence of bright red leaves associated with senescing Chinese tallow. Classification accuracies were greater than 95 percent at both spatial resolutions. There was no significant difference in either forest in the detection of tallow or inclusion of non-tallow trees associated with the two spatial resolutions. In marshes, slightly more tallow occurrences were mapped with the lower spatial resolution, but there were also more misclassifications of native land covers as tallow. Combining all land covers, there was no difference at detecting tallow occurrences (equal omission errors) between the two resolutions, but the higher spatial resolution was associated with less inclusion of non-tallow land covers as tallow (lower commission error). Overall, these results confirm that high spatial (???1 m) but low spectral resolution remote sensing data can be used for mapping Chinese tallow trees in dominant environments found in coastal and adjacent upland landscapes.

A Comparison of Spatial and Spectral Image Resolution for Mapping Invasive Plants in Coastal California

NASA Astrophysics Data System (ADS)

Underwood, Emma C.; Ustin, Susan L.; Ramirez, Carlos M.

2007-01-01

We explored the potential of detecting three target invasive species: iceplant ( Carpobrotus edulis), jubata grass ( Cortaderia jubata), and blue gum ( Eucalyptus globulus) at Vandenberg Air Force Base, California. We compared the accuracy of mapping six communities (intact coastal scrub, iceplant invaded coastal scrub, iceplant invaded chaparral, jubata grass invaded chaparral, blue gum invaded chaparral, and intact chaparral) using four images with different combinations of spatial and spectral resolution: hyperspectral AVIRIS imagery (174 wavebands, 4 m spatial resolution), spatially degraded AVIRIS (174 bands, 30 m), spectrally degraded AVIRIS (6 bands, 4 m), and both spatially and spectrally degraded AVIRIS (6 bands, 30 m, i.e., simulated Landsat ETM data). Overall success rates for classifying the six classes was 75% (kappa 0.7) using full resolution AVIRIS, 58% (kappa 0.5) for the spatially degraded AVIRIS, 42% (kappa 0.3) for the spectrally degraded AVIRIS, and 37% (kappa 0.3) for the spatially and spectrally degraded AVIRIS. A true Landsat ETM image was also classified to illustrate that the results from the simulated ETM data were representative, which provided an accuracy of 50% (kappa 0.4). Mapping accuracies using different resolution images are evaluated in the context of community heterogeneity (species richness, diversity, and percent species cover). Findings illustrate that higher mapping accuracies are achieved with images possessing high spectral resolution, thus capturing information across the visible and reflected infrared solar spectrum. Understanding the tradeoffs in spectral and spatial resolution can assist land managers in deciding the most appropriate imagery with respect to target invasives and community characteristics.

Error Estimation in an Optimal Interpolation Scheme for High Spatial and Temporal Resolution SST Analyses

NASA Technical Reports Server (NTRS)

Rigney, Matt; Jedlovec, Gary; LaFontaine, Frank; Shafer, Jaclyn

2010-01-01

Heat and moisture exchange between ocean surface and atmosphere plays an integral role in short-term, regional NWP. Current SST products lack both spatial and temporal resolution to accurately capture small-scale features that affect heat and moisture flux. NASA satellite is used to produce high spatial and temporal resolution SST analysis using an OI technique.

Instrumentation in molecular imaging.

PubMed

Wells, R Glenn

2016-12-01

In vivo molecular imaging is a challenging task and no single type of imaging system provides an ideal solution. Nuclear medicine techniques like SPECT and PET provide excellent sensitivity but have poor spatial resolution. Optical imaging has excellent sensitivity and spatial resolution, but light photons interact strongly with tissues and so only small animals and targets near the surface can be accurately visualized. CT and MRI have exquisite spatial resolution, but greatly reduced sensitivity. To overcome the limitations of individual modalities, molecular imaging systems often combine individual cameras together, for example, merging nuclear medicine cameras with CT or MRI to allow the visualization of molecular processes with both high sensitivity and high spatial resolution.

Microdome-gooved Gd(2)O(2)S:Tb scintillator for flexible and high resolution digital radiography.

PubMed

Jung, Phill Gu; Lee, Chi Hoon; Bae, Kong Myeong; Lee, Jae Min; Lee, Sang Min; Lim, Chang Hwy; Yun, Seungman; Kim, Ho Kyung; Ko, Jong Soo

2010-07-05

A flexible microdome-grooved Gd(2)O(2)S:Tb scintillator is simulated, fabricated, and characterized for digital radiography applications. According to Monte Carlo simulation results, the dome-grooved structure has a high spatial resolution, which is verified by X-ray image performance of the scintillator. The proposed scintillator has lower X-ray sensitivity than a nonstructured scintillator but almost two times higher spatial resolution at high spatial frequency. Through evaluation of the X-ray performance of the fabricated scintillators, we confirm that the microdome-grooved scintillator can be applied to next-generation flexible digital radiography systems requiring high spatial resolution.

Raman spectroscopy-based detection of chemical contaminants in food powders

NASA Astrophysics Data System (ADS)

Chao, Kuanglin; Dhakal, Sagar; Qin, Jianwei; Kim, Moon; Bae, Abigail

2016-05-01

Raman spectroscopy technique has proven to be a reliable method for qualitative detection of chemical contaminants in food ingredients and products. For quantitative imaging-based detection, each contaminant particle in a food sample must be detected and it is important to determine the necessary spatial resolution needed to effectively detect the contaminant particles. This study examined the effective spatial resolution required for detection of maleic acid in tapioca starch and benzoyl peroxide in wheat flour. Each chemical contaminant was mixed into its corresponding food powder at a concentration of 1% (w/w). Raman spectral images were collected for each sample, leveled across a 45 mm x 45 mm area, using different spatial resolutions. Based on analysis of these images, a spatial resolution of 0.5mm was selected as effective spatial resolution for detection of maleic acid in starch and benzoyl peroxide in flour. An experiment was then conducted using the 0.5mm spatial resolution to demonstrate Raman imaging-based quantitative detection of these contaminants for samples prepared at 0.1%, 0.3%, and 0.5% (w/w) concentrations. The results showed a linear correlation between the detected numbers of contaminant pixels and the actual concentrations of contaminant.

Fusion and quality analysis for remote sensing images using contourlet transform

NASA Astrophysics Data System (ADS)

Choi, Yoonsuk; Sharifahmadian, Ershad; Latifi, Shahram

2013-05-01

Recent developments in remote sensing technologies have provided various images with high spatial and spectral resolutions. However, multispectral images have low spatial resolution and panchromatic images have low spectral resolution. Therefore, image fusion techniques are necessary to improve the spatial resolution of spectral images by injecting spatial details of high-resolution panchromatic images. The objective of image fusion is to provide useful information by improving the spatial resolution and the spectral information of the original images. The fusion results can be utilized in various applications, such as military, medical imaging, and remote sensing. This paper addresses two issues in image fusion: i) image fusion method and ii) quality analysis of fusion results. First, a new contourlet-based image fusion method is presented, which is an improvement over the wavelet-based fusion. This fusion method is then applied to a case study to demonstrate its fusion performance. Fusion framework and scheme used in the study are discussed in detail. Second, quality analysis for the fusion results is discussed. We employed various quality metrics in order to analyze the fusion results both spatially and spectrally. Our results indicate that the proposed contourlet-based fusion method performs better than the conventional wavelet-based fusion methods.

Impaired temporal, not just spatial, resolution in amblyopia.

PubMed

Spang, Karoline; Fahle, Manfred

2009-11-01

In amblyopia, neuronal deficits deteriorate spatial vision including visual acuity, possibly because of a lack of use-dependent fine-tuning of afferents to the visual cortex during infancy; but temporal processing may deteriorate as well. Temporal, rather than spatial, resolution was investigated in patients with amblyopia by means of a task based on time-defined figure-ground segregation. Patients had to indicate the quadrant of the visual field where a purely time-defined square appeared. The results showed a clear decrease in temporal resolution of patients' amblyopic eyes compared with the dominant eyes in this task. The extent of this decrease in figure-ground segregation based on time of motion onset only loosely correlated with the decrease in spatial resolution and spanned a smaller range than did the spatial loss. Control experiments with artificially induced blur in normal observers confirmed that the decrease in temporal resolution was not simply due to the acuity loss. Amblyopia not only decreases spatial resolution, but also temporal factors such as time-based figure-ground segregation, even at high stimulus contrasts. This finding suggests that the realm of neuronal processes that may be disturbed in amblyopia is larger than originally thought.

Spatial Resolution and Refractive Index Contrast of Resonant Photonic Crystal Surfaces for Biosensing

PubMed Central

Triggs, G. J.; Fischer, M.; Stellinga, D.; Scullion, M. G.; Evans, G. J. O.; Krauss, T. F.

2015-01-01

By depositing a resolution test pattern on top of a Si3N4 photonic crystal resonant surface, we have measured the dependence of spatial resolution on refractive index contrast Δn. Our experimental results and finite-difference time-domain (FDTD) simulations at different refractive index contrasts show that the spatial resolution of our device reduces with reduced contrast, which is an important consideration in biosensing, where the contrast may be of order 10−2. We also compare 1-D and 2-D gratings, taking into account different incidence polarizations, leading to a better understanding of the excitation and propagation of the resonant modes in these structures, as well as how this contributes to the spatial resolution. At Δn = 0.077, we observe resolutions of 2 and 6 μm parallel to and perpendicular to the grooves of a 1-D grating, respectively, and show that for polarized illumination of a 2-D grating, resolution remains asymmetrical. Illumination of a 2-D grating at 45° results in symmetric resolution. At very low index contrast, the resolution worsens dramatically, particularly for Δn < 0.01, where we observe a resolution exceeding 10 μm for our device. In addition, we measure a reduction in the resonance linewidth as the index contrast becomes lower, corresponding to a longer resonant mode propagation length in the structure and contributing to the change in spatial resolution. PMID:26356353

Wind Competing Against Settling: A Coherent Model of the GW Virginis Instability Domain

NASA Astrophysics Data System (ADS)

Quirion, P.-O.; Fontaine, G.; Brassard, P.

2012-08-01

We examine in detail the proposition that GW Vir pulsators owe their existence to a residual stellar wind that competes against the settling of the carbon and oxygen atoms which "fuel" pulsational instabilities via their opacity. With cooling, the fading wind progressively loses its capacity to maintain enough of these opaque atoms in the driving region, leading naturally to a red edge where pulsations disappear. We investigate, in particular, the effects of changing the mass-loss law and the initial envelope composition on the position of the red edge in the log g-T eff diagram. With this approach, we derive a coherent picture of the GW Vir instability domain.

Ice under cover: Using bulk spatial and physical properties of probable ground ice driven mass wasting features on Ceres to better understand its surface

NASA Astrophysics Data System (ADS)

Hughson, K.; Russell, C.; Schmidt, B. E.; Chilton, H.; Scully, J. E. C.; Castillo, J. C.; Combe, J. P.; Ammannito, E.; Sizemore, H.; Platz, T.; Byrne, S.; Nathues, A.; Raymond, C. A.

2016-12-01

NASA's Dawn spacecraft arrived at Ceres on March 6, 2015, and has been studying the dwarf planet through a series of successively lower orbits, obtaining morphological and topographical image, mineralogical, elemental composition, and gravity data (Russell et al., 2016). Images taken by Dawn's Framing Camera show a multitude of flow features that were broadly interpreted as ground ice related structures either similar to ice cored/ice cemented flows (as seen on Earth and Mars), long run-out landslides, or fluidized ejecta (as seen on Mars) by Schmidt et al. (2016a and 2016b) and Buczkowski et al. (2016). The aforementioned ice cored/ice cemented-like flows are present only at high latitudes. Results from Dawn's Gamma Ray and Neutron Detector (GRaND) indicate a shallow ice table on Ceres above 45-50°N/S, which supports the interpretation that these flows are ice-rich (Prettyman et al., 2016). A near coincident spectral detection of H2O ice with one of these ice cored/ice cemented-like flows in Oxo crater by Dawn's Visual and Infrared spectrometer (VIR) further bolsters this claim (Combe et al., 2016). We use aggregate spatial and physical properties of these ice attributed cerean flows, such as flow orientation, inclination, preference for north or south facing slopes, drop height to run-out length ratio, geographical location, and areal number density to better understand the rheology and distribution of ground ice in Ceres' uppermost layer. By combining these data with local spectroscopic, global elemental abundance, experimentally derived physical properties of cerean analogue material, and other morphological information (such as the morphologies of flow hosting craters) we intend to further test the ground ice hypothesis for the formation of these flows and constrain the global distribution of near surface ground ice on Ceres to a higher fidelity than what would be possible using GRaND and VIR observations alone. References: Buczkowski et al., (2016) Science, AcceptedCombe, J-P., et al. (2016) Science, AcceptedPrettyman, T. H., et al. (2016) LPSC XVII, Abstract #2228 Russell, et al. (2016) Science, AcceptedSchmidt, B. E., et al. (2016a) LPSC XVII, Abstract #2677 Schmidt, B. E., et al. (2016b), Nature Geoscience, In Review

High spatial resolution compressed sensing (HSPARSE) functional MRI.

PubMed

Fang, Zhongnan; Van Le, Nguyen; Choy, ManKin; Lee, Jin Hyung

2016-08-01

To propose a novel compressed sensing (CS) high spatial resolution functional MRI (fMRI) method and demonstrate the advantages and limitations of using CS for high spatial resolution fMRI. A randomly undersampled variable density spiral trajectory enabling an acceleration factor of 5.3 was designed with a balanced steady state free precession sequence to achieve high spatial resolution data acquisition. A modified k-t SPARSE method was then implemented and applied with a strategy to optimize regularization parameters for consistent, high quality CS reconstruction. The proposed method improves spatial resolution by six-fold with 12 to 47% contrast-to-noise ratio (CNR), 33 to 117% F-value improvement and maintains the same temporal resolution. It also achieves high sensitivity of 69 to 99% compared the original ground-truth, small false positive rate of less than 0.05 and low hemodynamic response function distortion across a wide range of CNRs. The proposed method is robust to physiological noise and enables detection of layer-specific activities in vivo, which cannot be resolved using the highest spatial resolution Nyquist acquisition. The proposed method enables high spatial resolution fMRI that can resolve layer-specific brain activity and demonstrates the significant improvement that CS can bring to high spatial resolution fMRI. Magn Reson Med 76:440-455, 2016. © 2015 The Authors. Magnetic Resonance in Medicine published by Wiley Periodicals, Inc. on behalf of International Society for Magnetic Resonance in Medicine. This is an open access article under the terms of the Creative Commons Attribution-NonCommercial-NoDerivs License, which permits use and distribution in any medium, provided the original work is properly cited, the use is non-commercial and no modifications or adaptations are made. © 2015 The Authors. Magnetic Resonance in Medicine published by Wiley Periodicals, Inc. on behalf of International Society for Magnetic Resonance in Medicine.

Electric crosstalk impairs spatial resolution of multi-electrode arrays in retinal implants

NASA Astrophysics Data System (ADS)

Wilke, R. G. H.; Khalili Moghadam, G.; Lovell, N. H.; Suaning, G. J.; Dokos, S.

2011-08-01

Active multi-electrode arrays are used in vision prostheses, including optic nerve cuffs and cortical and retinal implants for stimulation of neural tissue. For retinal implants, arrays with up to 1500 electrodes are used in clinical trials. The ability to convey information with high spatial resolution is critical for these applications. To assess the extent to which spatial resolution is impaired by electric crosstalk, finite-element simulation of electric field distribution in a simplified passive tissue model of the retina is performed. The effects of electrode size, electrode spacing, distance to target cells, and electrode return configuration (monopolar, tripolar, hexagonal) on spatial resolution is investigated in the form of a mathematical model of electric field distribution. Results show that spatial resolution is impaired with increased distance from the electrode array to the target cells. This effect can be partly compensated by non-monopolar electrode configurations and larger electrode diameters, albeit at the expense of lower pixel densities due to larger covering areas by each stimulation electrode. In applications where multi-electrode arrays can be brought into close proximity to target cells, as presumably with epiretinal implants, smaller electrodes in monopolar configuration can provide the highest spatial resolution. However, if the implantation site is further from the target cells, as is the case in suprachoroidal approaches, hexagonally guarded electrode return configurations can convey higher spatial resolution. This paper was originally submitted for the special issue containing contributions from the Sixth Biennial Research Congress of The Eye and the Chip.

The influence of multispectral scanner spatial resolution on forest feature classification

NASA Technical Reports Server (NTRS)

Sadowski, F. G.; Malila, W. A.; Sarno, J. E.; Nalepka, R. F.

1977-01-01

Inappropriate spatial resolution and corresponding data processing techniques may be major causes for non-optimal forest classification results frequently achieved from multispectral scanner (MSS) data. Procedures and results of empirical investigations are studied to determine the influence of MSS spatial resolution on the classification of forest features into levels of detail or hierarchies of information that might be appropriate for nationwide forest surveys and detailed in-place inventories. Two somewhat different, but related studies are presented. The first consisted of establishing classification accuracies for several hierarchies of features as spatial resolution was progressively coarsened from (2 meters) squared to (64 meters) squared. The second investigated the capabilities for specialized processing techniques to improve upon the results of conventional processing procedures for both coarse and fine resolution data.

Definition of SMOS Level 3 Land Products for the Villafranca del Castillo Data Processing Centre (CP34)

NASA Astrophysics Data System (ADS)

Lopez-Baeza, E.; Monsoriu Torres, A.; Font, J.; Alonso, O.

2009-04-01

The ESA SMOS (Soil Moisture and Ocean Salinity) Mission is planned to be launched in July 2009. The satellite will measure soil moisture over the continents and surface salinity of the oceans at resolutions that are sufficient for climatological-type studies. This paper describes the procedure to be used at the Spanish SMOS Level 3 and 4 Data Processing Centre (CP34) to generate Soil Moisture and other Land Surface Product maps from SMOS Level 2 data. This procedure can be used to map Soil Moisture, Vegetation Water Content and Soil Dielectric Constant data into different pre-defined spatial grids with fixed temporal frequency. The L3 standard Land Surface Products to be generated at CP34 are: Soil Moisture products: maximum spatial resolution with no spatial averaging, temporal averaging of 3 days, daily generation maximum spatial resolution with no spatial averaging, temporal averaging of 10 days, generation frequency of once every 10 days. b': maximum spatial resolution with no spatial averaging, temporal averaging of monthly decades (1st to 10th of the month, 11th to 20th of the month, 21st to last day of the month), generation frequency of once every decade monthly average, temporal averaging from L3 decade averages, monthly generation Seasonal average, temporal averaging from L3 monthly averages, seasonally generation yearly average, temporal averaging from L3 monthly averages, yearly generation Vegetation Water Content products: maximum spatial resolution with no spatial averaging, temporal averaging of 10 days, generation frequency of once every 10 days. a': maximum spatial resolution with no spatial averaging, temporal averaging of monthly decades (1st to 10th of the month, 11th to 20th of the month, 21st to last day of the month) using simple averaging method over the L2 products in ISEA grid, generation frequency of once every decade monthly average, temporal averaging from L3 decade averages, monthly generation seasonal average, temporal averaging from L3 monthly averages, seasonally generation yearly average, temporal averaging from L3 monthly averages, yearly generation Dielectric Constant products: (the dielectric constant products are delivered together with soil moisture products, with the same averaging periods and generation frequency): maximum spatial resolution with no spatial averaging, temporal averaging of 3 days, daily generation maximum spatial resolution with no spatial averaging, temporal averaging of 10 days, generation frequency of once every 10 days. b': maximum spatial resolution with no spatial averaging, temporal averaging of monthly decades (1st to 10th of the month, 11th to 20th of the month, 21st to last day of the month), generation frequency of once every decade monthly average, temporal averaging from L3 decade averages, monthly generation seasonal average, temporal averaging from L3 monthly averages, seasonally generation yearly average, temporal averaging from L3 monthly averages, yearly generation.

Simultaneous multiview capture and fusion improves spatial resolution in wide-field and light-sheet microscopy

PubMed Central

Wu, Yicong; Chandris, Panagiotis; Winter, Peter W.; Kim, Edward Y.; Jaumouillé, Valentin; Kumar, Abhishek; Guo, Min; Leung, Jacqueline M.; Smith, Corey; Rey-Suarez, Ivan; Liu, Huafeng; Waterman, Clare M.; Ramamurthi, Kumaran S.; La Riviere, Patrick J.; Shroff, Hari

2016-01-01

Most fluorescence microscopes are inefficient, collecting only a small fraction of the emitted light at any instant. Besides wasting valuable signal, this inefficiency also reduces spatial resolution and causes imaging volumes to exhibit significant resolution anisotropy. We describe microscopic and computational techniques that address these problems by simultaneously capturing and subsequently fusing and deconvolving multiple specimen views. Unlike previous methods that serially capture multiple views, our approach improves spatial resolution without introducing any additional illumination dose or compromising temporal resolution relative to conventional imaging. When applying our methods to single-view wide-field or dual-view light-sheet microscopy, we achieve a twofold improvement in volumetric resolution (~235 nm × 235 nm × 340 nm) as demonstrated on a variety of samples including microtubules in Toxoplasma gondii, SpoVM in sporulating Bacillus subtilis, and multiple protein distributions and organelles in eukaryotic cells. In every case, spatial resolution is improved with no drawback by harnessing previously unused fluorescence. PMID:27761486

The Effect of Spatial and Temporal Resolution of Cine Phase Contrast MRI on Wall Shear Stress and Oscillatory Shear Index Assessment

PubMed Central

Gijsen, Frank J.; Marquering, Henk; van Ooij, Pim; vanBavel, Ed; Wentzel, Jolanda J.; Nederveen, Aart J.

2016-01-01

Introduction Wall shear stress (WSS) and oscillatory shear index (OSI) are associated with atherosclerotic disease. Both parameters are derived from blood velocities, which can be measured with phase-contrast MRI (PC-MRI). Limitations in spatiotemporal resolution of PC-MRI are known to affect these measurements. Our aim was to investigate the effect of spatiotemporal resolution using a carotid artery phantom. Methods A carotid artery phantom was connected to a flow set-up supplying pulsatile flow. MRI measurement planes were placed at the common carotid artery (CCA) and internal carotid artery (ICA). Two-dimensional PC-MRI measurements were performed with thirty different spatiotemporal resolution settings. The MRI flow measurement was validated with ultrasound probe measurements. Mean flow, peak flow, flow waveform, WSS and OSI were compared for these spatiotemporal resolutions using regression analysis. The slopes of the regression lines were reported in %/mm and %/100ms. The distribution of low and high WSS and OSI was compared between different spatiotemporal resolutions. Results The mean PC-MRI CCA flow (2.5±0.2mL/s) agreed with the ultrasound probe measurements (2.7±0.02mL/s). Mean flow (mL/s) depended only on spatial resolution (CCA:-13%/mm, ICA:-49%/mm). Peak flow (mL/s) depended on both spatial (CCA:-13%/mm, ICA:-17%/mm) and temporal resolution (CCA:-19%/100ms, ICA:-24%/100ms). Mean WSS (Pa) was in inverse relationship only with spatial resolution (CCA:-19%/mm, ICA:-33%/mm). OSI was dependent on spatial resolution for CCA (-26%/mm) and temporal resolution for ICA (-16%/100ms). The regions of low and high WSS and OSI matched for most of the spatiotemporal resolutions (CCA:30/30, ICA:28/30 cases for WSS; CCA:23/30, ICA:29/30 cases for OSI). Conclusion We show that both mean flow and mean WSS are independent of temporal resolution. Peak flow and OSI are dependent on both spatial and temporal resolution. However, the magnitude of mean and peak flow, WSS and OSI, and the spatial distribution of OSI and WSS did not exhibit a strong dependency on spatiotemporal resolution. PMID:27669568

Zonal wavefront sensing with enhanced spatial resolution.

PubMed

Pathak, Biswajit; Boruah, Bosanta R

2016-12-01

In this Letter, we introduce a scheme to enhance the spatial resolution of a zonal wavefront sensor. The zonal wavefront sensor comprises an array of binary gratings implemented by a ferroelectric spatial light modulator (FLCSLM) followed by a lens, in lieu of the array of lenses in the Shack-Hartmann wavefront sensor. We show that the fast response of the FLCSLM device facilitates quick display of several laterally shifted binary grating patterns, and the programmability of the device enables simultaneous capturing of each focal spot array. This eventually leads to a wavefront estimation with an enhanced spatial resolution without much sacrifice on the sensor frame rate, thus making the scheme suitable for high spatial resolution measurement of transient wavefronts. We present experimental and numerical simulation results to demonstrate the importance of the proposed wavefront sensing scheme.

Hyperspectral and multispectral data fusion based on linear-quadratic nonnegative matrix factorization

NASA Astrophysics Data System (ADS)

Benhalouche, Fatima Zohra; Karoui, Moussa Sofiane; Deville, Yannick; Ouamri, Abdelaziz

2017-04-01

This paper proposes three multisharpening approaches to enhance the spatial resolution of urban hyperspectral remote sensing images. These approaches, related to linear-quadratic spectral unmixing techniques, use a linear-quadratic nonnegative matrix factorization (NMF) multiplicative algorithm. These methods begin by unmixing the observable high-spectral/low-spatial resolution hyperspectral and high-spatial/low-spectral resolution multispectral images. The obtained high-spectral/high-spatial resolution features are then recombined, according to the linear-quadratic mixing model, to obtain an unobservable multisharpened high-spectral/high-spatial resolution hyperspectral image. In the first designed approach, hyperspectral and multispectral variables are independently optimized, once they have been coherently initialized. These variables are alternately updated in the second designed approach. In the third approach, the considered hyperspectral and multispectral variables are jointly updated. Experiments, using synthetic and real data, are conducted to assess the efficiency, in spatial and spectral domains, of the designed approaches and of linear NMF-based approaches from the literature. Experimental results show that the designed methods globally yield very satisfactory spectral and spatial fidelities for the multisharpened hyperspectral data. They also prove that these methods significantly outperform the used literature approaches.

Anthropogenic heat flux: advisable spatial resolutions when input data are scarce

NASA Astrophysics Data System (ADS)

Gabey, A. M.; Grimmond, C. S. B.; Capel-Timms, I.

2018-02-01

Anthropogenic heat flux (QF) may be significant in cities, especially under low solar irradiance and at night. It is of interest to many practitioners including meteorologists, city planners and climatologists. QF estimates at fine temporal and spatial resolution can be derived from models that use varying amounts of empirical data. This study compares simple and detailed models in a European megacity (London) at 500 m spatial resolution. The simple model (LQF) uses spatially resolved population data and national energy statistics. The detailed model (GQF) additionally uses local energy, road network and workday population data. The Fractions Skill Score (FSS) and bias are used to rate the skill with which the simple model reproduces the spatial patterns and magnitudes of QF, and its sub-components, from the detailed model. LQF skill was consistently good across 90% of the city, away from the centre and major roads. The remaining 10% contained elevated emissions and "hot spots" representing 30-40% of the total city-wide energy. This structure was lost because it requires workday population, spatially resolved building energy consumption and/or road network data. Daily total building and traffic energy consumption estimates from national data were within ± 40% of local values. Progressively coarser spatial resolutions to 5 km improved skill for total QF, but important features (hot spots, transport network) were lost at all resolutions when residential population controlled spatial variations. The results demonstrate that simple QF models should be applied with conservative spatial resolution in cities that, like London, exhibit time-varying energy use patterns.

Generating High-Temporal and Spatial Resolution TIR Image Data

NASA Astrophysics Data System (ADS)

Herrero-Huerta, M.; Lagüela, S.; Alfieri, S. M.; Menenti, M.

2017-09-01

Remote sensing imagery to monitor global biophysical dynamics requires the availability of thermal infrared data at high temporal and spatial resolution because of the rapid development of crops during the growing season and the fragmentation of most agricultural landscapes. Conversely, no single sensor meets these combined requirements. Data fusion approaches offer an alternative to exploit observations from multiple sensors, providing data sets with better properties. A novel spatio-temporal data fusion model based on constrained algorithms denoted as multisensor multiresolution technique (MMT) was developed and applied to generate TIR synthetic image data at both temporal and spatial high resolution. Firstly, an adaptive radiance model is applied based on spectral unmixing analysis of . TIR radiance data at TOA (top of atmosphere) collected by MODIS daily 1-km and Landsat - TIRS 16-day sampled at 30-m resolution are used to generate synthetic daily radiance images at TOA at 30-m spatial resolution. The next step consists of unmixing the 30 m (now lower resolution) images using the information about their pixel land-cover composition from co-registered images at higher spatial resolution. In our case study, TIR synthesized data were unmixed to the Sentinel 2 MSI with 10 m resolution. The constrained unmixing preserves all the available radiometric information of the 30 m images and involves the optimization of the number of land-cover classes and the size of the moving window for spatial unmixing. Results are still being evaluated, with particular attention for the quality of the data streams required to apply our approach.

LOV Histidine Kinase Modulates the General Stress Response System and Affects the virB Operon Expression in Brucella abortus

PubMed Central

Sycz, Gabriela; Carrica, Mariela Carmen; Tseng, Tong-Seung; Bogomolni, Roberto A.; Briggs, Winslow R.; Goldbaum, Fernando A.; Paris, Gastón

2015-01-01

Brucella is the causative agent of the zoonotic disease brucellosis, and its success as an intracellular pathogen relies on its ability to adapt to the harsh environmental conditions that it encounters inside the host. The Brucella genome encodes a sensor histidine kinase containing a LOV domain upstream from the kinase, LOVHK, which plays an important role in light-regulated Brucella virulence. In this report we study the intracellular signaling pathway initiated by the light sensor LOVHK using an integrated biochemical and genetic approach. From results of bacterial two-hybrid assays and phosphotransfer experiments we demonstrate that LOVHK functionally interacts with two response regulators: PhyR and LovR, constituting a functional two-component signal-transduction system. LOVHK contributes to the activation of the General Stress Response (GSR) system in Brucella via PhyR, while LovR is proposed to be a phosphate-sink for LOVHK, decreasing its phosphorylation state. We also show that in the absence of LOVHK the expression of the virB operon is down-regulated. In conclusion, our results suggest that LOVHK positively regulates the GSR system in vivo, and has an effect on the expression of the virB operon. The proposed regulatory network suggests a similar role for LOVHK in other microorganisms. PMID:25993430

A compiler and validator for flight operations on NASA space missions

NASA Astrophysics Data System (ADS)

Fonte, Sergio; Politi, Romolo; Capria, Maria Teresa; Giardino, Marco; De Sanctis, Maria Cristina

2016-07-01

In NASA missions the management and the programming of the flight systems is performed by a specific scripting language, the SASF (Spacecraft Activity Sequence File). In order to perform a check on the syntax and grammar it is necessary a compiler that stress the errors (eventually) found in the sequence file produced for an instrument on board the flight system. In our experience on Dawn mission, we developed VIRV (VIR Validator), a tool that performs checks on the syntax and grammar of SASF, runs a simulations of VIR acquisitions and eventually finds violation of the flight rules of the sequences produced. The project of a SASF compiler (SSC - Spacecraft Sequence Compiler) is ready to have a new implementation: the generalization for different NASA mission. In fact, VIRV is a compiler for a dialect of SASF; it includes VIR commands as part of SASF language. Our goal is to produce a general compiler for the SASF, in which every instrument has a library to be introduced into the compiler. The SSC can analyze a SASF, produce a log of events, perform a simulation of the instrument acquisition and check the flight rules for the instrument selected. The output of the program can be produced in GRASS GIS format and may help the operator to analyze the geometry of the acquisition.

Spatial Scale Gap Filling Using an Unmanned Aerial System: A Statistical Downscaling Method for Applications in Precision Agriculture.

PubMed

Hassan-Esfahani, Leila; Ebtehaj, Ardeshir M; Torres-Rua, Alfonso; McKee, Mac

2017-09-14

Applications of satellite-borne observations in precision agriculture (PA) are often limited due to the coarse spatial resolution of satellite imagery. This paper uses high-resolution airborne observations to increase the spatial resolution of satellite data for related applications in PA. A new variational downscaling scheme is presented that uses coincident aerial imagery products from "AggieAir", an unmanned aerial system, to increase the spatial resolution of Landsat satellite data. This approach is primarily tested for downscaling individual band Landsat images that can be used to derive normalized difference vegetation index (NDVI) and surface soil moisture (SSM). Quantitative and qualitative results demonstrate promising capabilities of the downscaling approach enabling effective increase of the spatial resolution of Landsat imageries by orders of 2 to 4. Specifically, the downscaling scheme retrieved the missing high-resolution feature of the imageries and reduced the root mean squared error by 15, 11, and 10 percent in visual, near infrared, and thermal infrared bands, respectively. This metric is reduced by 9% in the derived NDVI and remains negligibly for the soil moisture products.

Spatial Scale Gap Filling Using an Unmanned Aerial System: A Statistical Downscaling Method for Applications in Precision Agriculture

PubMed Central

Hassan-Esfahani, Leila; Ebtehaj, Ardeshir M.; McKee, Mac

2017-01-01

Applications of satellite-borne observations in precision agriculture (PA) are often limited due to the coarse spatial resolution of satellite imagery. This paper uses high-resolution airborne observations to increase the spatial resolution of satellite data for related applications in PA. A new variational downscaling scheme is presented that uses coincident aerial imagery products from “AggieAir”, an unmanned aerial system, to increase the spatial resolution of Landsat satellite data. This approach is primarily tested for downscaling individual band Landsat images that can be used to derive normalized difference vegetation index (NDVI) and surface soil moisture (SSM). Quantitative and qualitative results demonstrate promising capabilities of the downscaling approach enabling effective increase of the spatial resolution of Landsat imageries by orders of 2 to 4. Specifically, the downscaling scheme retrieved the missing high-resolution feature of the imageries and reduced the root mean squared error by 15, 11, and 10 percent in visual, near infrared, and thermal infrared bands, respectively. This metric is reduced by 9% in the derived NDVI and remains negligibly for the soil moisture products. PMID:28906428

Calibration of Fuji BAS-SR type imaging plate as high spatial resolution x-ray radiography recorder

NASA Astrophysics Data System (ADS)

Yan, Ji; Zheng, Jianhua; Zhang, Xing; Chen, Li; Wei, Minxi

2017-05-01

Image Plates as x-ray recorder have advantages including reusable, high dynamic range, large active area, and so on. In this work, Fuji BAS-SR type image plate combined with BAS-5000 scanner is calibrated. The fade rates of Image Plates has been measured using x-ray diffractometric in different room temperature; the spectral response of Image Plates has been measured using 241Am radioactive sealed source and fitting with linear model; the spatial resolution of Image Plates has been measured using micro-focus x-ray tube. The results show that Image Plates has an exponent decade curve and double absorption edge response curve. The spatial resolution of Image Plates with 25μ/50μ scanner resolution is 6.5lp/mm, 11.9lp/mm respectively and gold grid radiography is collected with 80lp/mm spatial resolution using SR-type Image Plates. BAS-SR type Image Plates can do high spatial resolution and quantitative radiographic works. It can be widely used in High energy density physics (HEDP), inertial confinement fusion (ICF) and laboratory astronomy physics.

Simulations of the temporal and spatial resolution for a compact time-resolved electron diffractometer

NASA Astrophysics Data System (ADS)

Robinson, Matthew S.; Lane, Paul D.; Wann, Derek A.

2016-02-01

A novel compact electron gun for use in time-resolved gas electron diffraction experiments has recently been designed and commissioned. In this paper we present and discuss the extensive simulations that were performed to underpin the design in terms of the spatial and temporal qualities of the pulsed electron beam created by the ionisation of a gold photocathode using a femtosecond laser. The response of the electron pulses to a solenoid lens used to focus the electron beam has also been studied. The simulated results show that focussing the electron beam affects the overall spatial and temporal resolution of the experiment in a variety of ways, and that factors that improve the resolution of one parameter can often have a negative effect on the other. A balance must, therefore, be achieved between spatial and temporal resolution. The optimal experimental time resolution for the apparatus is predicted to be 416 fs for studies of gas-phase species, while the predicted spatial resolution of better than 2 nm-1 compares well with traditional time-averaged electron diffraction set-ups.

Coherent optical adaptive technique improves the spatial resolution of STED microscopy in thick samples

PubMed Central

Yan, Wei; Yang, Yanlong; Tan, Yu; Chen, Xun; Li, Yang; Qu, Junle; Ye, Tong

2018-01-01

Stimulated emission depletion microscopy (STED) is one of far-field optical microscopy techniques that can provide sub-diffraction spatial resolution. The spatial resolution of the STED microscopy is determined by the specially engineered beam profile of the depletion beam and its power. However, the beam profile of the depletion beam may be distorted due to aberrations of optical systems and inhomogeneity of specimens’ optical properties, resulting in a compromised spatial resolution. The situation gets deteriorated when thick samples are imaged. In the worst case, the sever distortion of the depletion beam profile may cause complete loss of the super resolution effect no matter how much depletion power is applied to specimens. Previously several adaptive optics approaches have been explored to compensate aberrations of systems and specimens. However, it is hard to correct the complicated high-order optical aberrations of specimens. In this report, we demonstrate that the complicated distorted wavefront from a thick phantom sample can be measured by using the coherent optical adaptive technique (COAT). The full correction can effectively maintain and improve the spatial resolution in imaging thick samples. PMID:29400356

Estimating Gross Primary Production in Cropland with High Spatial and Temporal Scale Remote Sensing Data

NASA Astrophysics Data System (ADS)

Lin, S.; Li, J.; Liu, Q.

2018-04-01

Satellite remote sensing data provide spatially continuous and temporally repetitive observations of land surfaces, and they have become increasingly important for monitoring large region of vegetation photosynthetic dynamic. But remote sensing data have their limitation on spatial and temporal scale, for example, higher spatial resolution data as Landsat data have 30-m spatial resolution but 16 days revisit period, while high temporal scale data such as geostationary data have 30-minute imaging period, which has lower spatial resolution (> 1 km). The objective of this study is to investigate whether combining high spatial and temporal resolution remote sensing data can improve the gross primary production (GPP) estimation accuracy in cropland. For this analysis we used three years (from 2010 to 2012) Landsat based NDVI data, MOD13 vegetation index product and Geostationary Operational Environmental Satellite (GOES) geostationary data as input parameters to estimate GPP in a small region cropland of Nebraska, US. Then we validated the remote sensing based GPP with the in-situ measurement carbon flux data. Results showed that: 1) the overall correlation between GOES visible band and in-situ measurement photosynthesis active radiation (PAR) is about 50 % (R2 = 0.52) and the European Center for Medium-Range Weather Forecasts ERA-Interim reanalysis data can explain 64 % of PAR variance (R2 = 0.64); 2) estimating GPP with Landsat 30-m spatial resolution data and ERA daily meteorology data has the highest accuracy(R2 = 0.85, RMSE < 3 gC/m2/day), which has better performance than using MODIS 1-km NDVI/EVI product import; 3) using daily meteorology data as input for GPP estimation in high spatial resolution data would have higher relevance than 8-day and 16-day input. Generally speaking, using the high spatial resolution and high frequency satellite based remote sensing data can improve GPP estimation accuracy in cropland.

Evaluating the influence of spatial resolution of Landsat predictors on the accuracy of biomass models for large-area estimation across the eastern USA

NASA Astrophysics Data System (ADS)

Deo, Ram K.; Domke, Grant M.; Russell, Matthew B.; Woodall, Christopher W.; Andersen, Hans-Erik

2018-05-01

Aboveground biomass (AGB) estimates for regional-scale forest planning have become cost-effective with the free access to satellite data from sensors such as Landsat and MODIS. However, the accuracy of AGB predictions based on passive optical data depends on spatial resolution and spatial extent of target area as fine resolution (small pixels) data are associated with smaller coverage and longer repeat cycles compared to coarse resolution data. This study evaluated various spatial resolutions of Landsat-derived predictors on the accuracy of regional AGB models at three different sites in the eastern USA: Maine, Pennsylvania-New Jersey, and South Carolina. We combined national forest inventory data with Landsat-derived predictors at spatial resolutions ranging from 30–1000 m to understand the optimal spatial resolution of optical data for large-area (regional) AGB estimation. Ten generic models were developed using the data collected in 2014, 2015 and 2016, and the predictions were evaluated (i) at the county-level against the estimates of the USFS Forest Inventory and Analysis Program which relied on EVALIDator tool and national forest inventory data from the 2009–2013 cycle and (ii) within a large number of strips (~1 km wide) predicted via LiDAR metrics at 30 m spatial resolution. The county-level estimates by the EVALIDator and Landsat models were highly related (R 2 > 0.66), although the R 2 varied significantly across sites and resolution of predictors. The mean and standard deviation of county-level estimates followed increasing and decreasing trends, respectively, with models of coarser resolution. The Landsat-based total AGB estimates were larger than the LiDAR-based total estimates within the strips, however the mean of AGB predictions by LiDAR were mostly within one-standard deviations of the mean predictions obtained from the Landsat-based model at any of the resolutions. We conclude that satellite data at resolutions up to 1000 m provide acceptable accuracy for continental scale analysis of AGB.

Fabrication and characterization of a 0.5-mm lutetium oxyorthosilicate detector array for high-resolution PET applications.

PubMed

Stickel, Jennifer R; Qi, Jinyi; Cherry, Simon R

2007-01-01

With the increasing use of in vivo imaging in mouse models of disease, there are many interesting applications that demand imaging of organs and tissues with submillimeter resolution. Though there are other contributing factors, the spatial resolution in small-animal PET is still largely determined by the detector pixel dimensions. In this work, a pair of lutetium oxyorthosilicate (LSO) arrays with 0.5-mm pixels was coupled to multichannel photomultiplier tubes and evaluated for use as high-resolution PET detectors. Flood histograms demonstrated that most crystals were clearly identifiable. Energy resolution varied from 22% to 38%. The coincidence timing resolution was 1.42-ns full width at half maximum (FWHM). The intrinsic spatial resolution was 0.68-mm FWHM as measured with a 30-gauge needle filled with (18)F. The improvement in spatial resolution in a tomographic setting is demonstrated using images of a line source phantom reconstructed with filtered backprojection and compared with images obtained from 2 dedicated small-animal PET scanners. Finally, a projection image of the mouse foot is shown to demonstrate the application of these 0.5-mm LSO detectors to a biologic task. A pair of highly pixelated LSO detections has been constructed and characterized for use as high-spatial-resolution PET detectors. It appears that small-animal PET systems capable of a FWHM spatial resolution of 600 microm or less are feasible and should be pursued.

Characterization of spatial and spectral resolution of a rotating prism chromotomographic hyperspectral imager

NASA Astrophysics Data System (ADS)

Bostick, Randall L.; Perram, Glen P.; Tuttle, Ronald

2009-05-01

The Air Force Institute of Technology (AFIT) has built a rotating prism chromotomographic hyperspectral imager (CTI) with the goal of extending the technology to exploit spatially extended sources with quickly varying (> 10 Hz) phenomenology, such as bomb detonations and muzzle flashes. This technology collects successive frames of 2-D data dispersed at different angles multiplexing spatial and spectral information which can then be used to reconstruct any arbitrary spectral plane(s). In this paper, the design of the AFIT instrument is described and then tested against a spectral target with near point source spatial characteristics to measure spectral and spatial resolution. It will be shown that, in theory, the spectral and spatial resolution in the 3-D spectral image cube is the nearly the same as a simple prism spectrograph with the same design. However, error in the knowledge of the prism linear dispersion at the detector array as a function of wavelength and projection angle will degrade resolution without further corrections. With minimal correction for error and use of a simple shift-and-add reconstruction algorithm, the CTI is able to produce a spatial resolution of about 2 mm in the object plane (234 μrad IFOV) and is limited by chromatic aberration. A spectral resolution of less than 1nm at shorter wavelengths is shown, limited primarily by prism dispersion.

Evaluating an image-fusion algorithm with synthetic-image-generation tools

NASA Astrophysics Data System (ADS)

Gross, Harry N.; Schott, John R.

1996-06-01

An algorithm that combines spectral mixing and nonlinear optimization is used to fuse multiresolution images. Image fusion merges images of different spatial and spectral resolutions to create a high spatial resolution multispectral combination. High spectral resolution allows identification of materials in the scene, while high spatial resolution locates those materials. In this algorithm, conventional spectral mixing estimates the percentage of each material (called endmembers) within each low resolution pixel. Three spectral mixing models are compared; unconstrained, partially constrained, and fully constrained. In the partially constrained application, the endmember fractions are required to sum to one. In the fully constrained application, all fractions are additionally required to lie between zero and one. While negative fractions seem inappropriate, they can arise from random spectral realizations of the materials. In the second part of the algorithm, the low resolution fractions are used as inputs to a constrained nonlinear optimization that calculates the endmember fractions for the high resolution pixels. The constraints mirror the low resolution constraints and maintain consistency with the low resolution fraction results. The algorithm can use one or more higher resolution sharpening images to locate the endmembers to high spatial accuracy. The algorithm was evaluated with synthetic image generation (SIG) tools. A SIG developed image can be used to control the various error sources that are likely to impair the algorithm performance. These error sources include atmospheric effects, mismodeled spectral endmembers, and variability in topography and illumination. By controlling the introduction of these errors, the robustness of the algorithm can be studied and improved upon. The motivation for this research is to take advantage of the next generation of multi/hyperspectral sensors. Although the hyperspectral images will be of modest to low resolution, fusing them with high resolution sharpening images will produce a higher spatial resolution land cover or material map.

A PRECISE CLUSTER MASS PROFILE AVERAGED FROM THE HIGHEST-QUALITY LENSING DATA

DOE Office of Scientific and Technical Information (OSTI.GOV)

Umetsu, Keiichi; Broadhurst, Tom; Zitrin, Adi

2011-09-01

We outline our methods for obtaining high-precision mass profiles, combining independent weak-lensing distortion, magnification, and strong-lensing measurements. For massive clusters, the strong- and weak-lensing regimes contribute equal logarithmic coverage of the radial profile. The utility of high-quality data is limited by the cosmic noise from large-scale structure along the line of sight. This noise is overcome when stacking clusters, as too are the effects of cluster asphericity and substructure, permitting a stringent test of theoretical models. We derive a mean radial mass profile of four similar mass clusters of high-quality Hubble Space Telescope and Subaru images, in the range Rmore » = 40-2800 kpc h {sup -1}, where the inner radial boundary is sufficiently large to avoid smoothing from miscentering effects. The stacked mass profile is detected at 58{sigma} significance over the entire radial range, with the contribution from the cosmic noise included. We show that the projected mass profile has a continuously steepening gradient out to beyond the virial radius, in remarkably good agreement with the standard Navarro-Frenk-White form predicted for the family of cold dark matter (CDM) dominated halos in gravitational equilibrium. The central slope is constrained to lie in the range, -dln {rho}/dln r = 0.89{sup +0.27}{sub -0.39}. The mean concentration is c{sub vir} = 7.68{sup +0.42}{sub -0.40} (at M{sub vir} = 1.54{sup +0.11}{sub -0.10} x 10{sup 15} M{sub sun} h {sup -1}), which is high for relaxed, high-mass clusters, but consistent with {Lambda}CDM when a sizable projection bias estimated from N-body simulations is considered. This possible tension will be more definitively explored with new cluster surveys, such as CLASH, LoCuSS, Subaru Hyper Suprime-Cam, and XXM-XXL, to construct the c{sub vir}-M{sub vir} relation over a wider mass range.« less

Comparison of antibiotic resistance, biofilm formation and conjugative transfer of Staphylococcus and Enterococcus isolates from International Space Station and Antarctic Research Station Concordia.

PubMed

Schiwon, Katarzyna; Arends, Karsten; Rogowski, Katja Marie; Fürch, Svea; Prescha, Katrin; Sakinc, Türkan; Van Houdt, Rob; Werner, Guido; Grohmann, Elisabeth

2013-04-01

The International Space Station (ISS) and the Antarctic Research Station Concordia are confined and isolated habitats in extreme and hostile environments. The human and habitat microflora can alter due to the special environmental conditions resulting in microbial contamination and health risk for the crew. In this study, 29 isolates from the ISS and 55 from the Antarctic Research Station Concordia belonging to the genera Staphylococcus and Enterococcus were investigated. Resistance to one or more antibiotics was detected in 75.8 % of the ISS and in 43.6 % of the Concordia strains. The corresponding resistance genes were identified by polymerase chain reaction in 86 % of the resistant ISS strains and in 18.2 % of the resistant Concordia strains. Plasmids are present in 86.2 % of the ISS and in 78.2 % of the Concordia strains. Eight Enterococcus faecalis strains (ISS) harbor plasmids of about 130 kb. Relaxase and/or transfer genes encoded on plasmids from gram-positive bacteria like pIP501, pRE25, pSK41, pGO1 and pT181 were detected in 86.2 % of the ISS and in 52.7 % of the Concordia strains. Most pSK41-homologous transfer genes were detected in ISS isolates belonging to coagulase-negative staphylococci. We demonstrated through mating experiments that Staphylococcus haemolyticus F2 (ISS) and the Concordia strain Staphylococcus hominis subsp. hominis G2 can transfer resistance genes to E. faecalis and Staphylococcus aureus, respectively. Biofilm formation was observed in 83 % of the ISS and in 92.7 % of the Concordia strains. In conclusion, the ISS isolates were shown to encode more resistance genes and possess a higher gene transfer capacity due to the presence of three vir signature genes, virB1, virB4 and virD4 than the Concordia isolates.

High Spatial Resolution Thermal Satellite Technologies

NASA Technical Reports Server (NTRS)

Ryan, Robert

2003-01-01

This document in the form of viewslides, reviews various low-cost alternatives to high spatial resolution thermal satellite technologies. There exists no follow-on to Landsat 7 or ASTER high spatial resolution thermal systems. This document reviews the results of the investigation in to the use of new technologies to create a low-cost useful alternative. Three suggested technologies are examined. 1. Conventional microbolometer pushbroom modes offers potential for low cost Landsat Data Continuity Mission (LDCM) thermal or ASTER capability with at least 60-120 ground sampling distance (GSD). 2. Backscanning could produce MultiSpectral Thermal Imager performance without cooled detectors. 3. Cooled detector could produce hyperspectral thermal class system or extremely high spatial resolution class instrument.

Improved spatial resolution in PET scanners using sampling techniques

PubMed Central

Surti, Suleman; Scheuermann, Ryan; Werner, Matthew E.; Karp, Joel S.

2009-01-01

Increased focus towards improved detector spatial resolution in PET has led to the use of smaller crystals in some form of light sharing detector design. In this work we evaluate two sampling techniques that can be applied during calibrations for pixelated detector designs in order to improve the reconstructed spatial resolution. The inter-crystal positioning technique utilizes sub-sampling in the crystal flood map to better sample the Compton scatter events in the detector. The Compton scatter rejection technique, on the other hand, rejects those events that are located further from individual crystal centers in the flood map. We performed Monte Carlo simulations followed by measurements on two whole-body scanners for point source data. The simulations and measurements were performed for scanners using scintillators with Zeff ranging from 46.9 to 63 for LaBr3 and LYSO, respectively. Our results show that near the center of the scanner, inter-crystal positioning technique leads to a gain of about 0.5-mm in reconstructed spatial resolution (FWHM) for both scanner designs. In a small animal LYSO scanner the resolution improves from 1.9-mm to 1.6-mm with the inter-crystal technique. The Compton scatter rejection technique shows higher gains in spatial resolution but at the cost of reduction in scanner sensitivity. The inter-crystal positioning technique represents a modest acquisition software modification for an improvement in spatial resolution, but at a cost of potentially longer data correction and reconstruction times. The Compton scatter rejection technique, while also requiring a modest acquisition software change with no increased data correction and reconstruction times, will be useful in applications where the scanner sensitivity is very high and larger improvements in spatial resolution are desirable. PMID:19779586

DOE Office of Scientific and Technical Information (OSTI.GOV)

Gao, Lan; Hill, K. W.; Bitter, M.

Here, a high spatial resolution of a few μm is often required for probing small-scale high-energy-density plasmas using high resolution x-ray imaging spectroscopy. This resolution can be achieved by adjusting system magnification to overcome the inherent limitation of the detector pixel size. Laboratory experiments on investigating the relation between spatial resolution and system magnification for a spherical crystal spectrometer are presented. Tungsten Lβ 2 rays from a tungsten-target micro-focus x-ray tube were diffracted by a Ge 440 crystal, which was spherically bent to a radius of 223 mm, and imaged onto an x-ray CCD with 13-μm pixel size. The source-to-crystalmore » (p) and crystal-to-detector (q) distances were varied to produce spatial magnifications ( M = q/p) ranging from 2 to 10. The inferred instrumental spatial width reduces with increasing system magnification M. However, the experimental measurement at each M is larger than the theoretical value of pixel size divided by M. Future work will focus on investigating possible broadening mechanisms that limit the spatial resolution.« less

Scaling field data to calibrate and validate moderate spatial resolution remote sensing models

USGS Publications Warehouse

Baccini, A.; Friedl, M.A.; Woodcock, C.E.; Zhu, Z.

2007-01-01

Validation and calibration are essential components of nearly all remote sensing-based studies. In both cases, ground measurements are collected and then related to the remote sensing observations or model results. In many situations, and particularly in studies that use moderate resolution remote sensing, a mismatch exists between the sensor's field of view and the scale at which in situ measurements are collected. The use of in situ measurements for model calibration and validation, therefore, requires a robust and defensible method to spatially aggregate ground measurements to the scale at which the remotely sensed data are acquired. This paper examines this challenge and specifically considers two different approaches for aggregating field measurements to match the spatial resolution of moderate spatial resolution remote sensing data: (a) landscape stratification; and (b) averaging of fine spatial resolution maps. The results show that an empirically estimated stratification based on a regression tree method provides a statistically defensible and operational basis for performing this type of procedure. 

Evaluating Hyperspectral Imaging of Wetland Vegetation as a Tool for Detecting Estuarine Nutrient Enrichment

DTIC Science & Technology

2008-05-01

the vegetation’s uptake of water column nutrients produces a spectral response; and 3) the spectral and spatial resolutions ...analysis. This allowed us to evaluate these assumptions at the landscape level, by using the high spectral and spatial resolution of the hyperspectral... spatial resolution (2.5 m pixels) HyMap hyperspectral imagery of the entire wetland. After using a hand-held spectrometer to characterize

Atmospheric Correction Prototype Algorithm for High Spatial Resolution Multispectral Earth Observing Imaging Systems

NASA Technical Reports Server (NTRS)

Pagnutti, Mary

2006-01-01

This viewgraph presentation reviews the creation of a prototype algorithm for atmospheric correction using high spatial resolution earth observing imaging systems. The objective of the work was to evaluate accuracy of a prototype algorithm that uses satellite-derived atmospheric products to generate scene reflectance maps for high spatial resolution (HSR) systems. This presentation focused on preliminary results of only the satellite-based atmospheric correction algorithm.

Preliminary frequency-domain analysis for the reconstructed spatial resolution of muon tomography

NASA Astrophysics Data System (ADS)

Yu, B.; Zhao, Z.; Wang, X.; Wang, Y.; Wu, D.; Zeng, Z.; Zeng, M.; Yi, H.; Luo, Z.; Yue, X.; Cheng, J.

2014-11-01

Muon tomography is an advanced technology to non-destructively detect high atomic number materials. It exploits the multiple Coulomb scattering information of muon to reconstruct the scattering density image of the traversed object. Because of the statistics of muon scattering, the measurement error of system and the data incompleteness, the reconstruction is always accompanied with a certain level of interference, which will influence the reconstructed spatial resolution. While statistical noises can be reduced by extending the measuring time, system parameters determine the ultimate spatial resolution that one system can reach. In this paper, an effective frequency-domain model is proposed to analyze the reconstructed spatial resolution of muon tomography. The proposed method modifies the resolution analysis in conventional computed tomography (CT) to fit the different imaging mechanism in muon scattering tomography. The measured scattering information is described in frequency domain, then a relationship between the measurements and the original image is proposed in Fourier domain, which is named as "Muon Central Slice Theorem". Furthermore, a preliminary analytical expression of the ultimate reconstructed spatial is derived, and the simulations are performed for validation. While the method is able to predict the ultimate spatial resolution of a given system, it can also be utilized for the optimization of system design and construction.

Improving spectral resolution in spatial encoding dimension of single-scan nuclear magnetic resonance 2D spin echo correlated spectroscopy

NASA Astrophysics Data System (ADS)

Lin, Liangjie; Wei, Zhiliang; Yang, Jian; Lin, Yanqin; Chen, Zhong

2014-11-01

The spatial encoding technique can be used to accelerate the acquisition of multi-dimensional nuclear magnetic resonance spectra. However, with this technique, we have to make trade-offs between the spectral width and the resolution in the spatial encoding dimension (F1 dimension), resulting in the difficulty of covering large spectral widths while preserving acceptable resolutions for spatial encoding spectra. In this study, a selective shifting method is proposed to overcome the aforementioned drawback. This method is capable of narrowing spectral widths and improving spectral resolutions in spatial encoding dimensions by selectively shifting certain peaks in spectra of the ultrafast version of spin echo correlated spectroscopy (UFSECSY). This method can also serve as a powerful tool to obtain high-resolution correlated spectra in inhomogeneous magnetic fields for its resistance to any inhomogeneity in the F1 dimension inherited from UFSECSY. Theoretical derivations and experiments have been carried out to demonstrate performances of the proposed method. Results show that the spectral width in spatial encoding dimension can be reduced by shortening distances between cross peaks and axial peaks with the proposed method and the expected resolution improvement can be achieved. Finally, the shifting-absent spectrum can be recovered readily by post-processing.

Sympathy for the Devil: Detailing the Effects of Planning-Unit Size, Thematic Resolution of Reef Classes, and Socioeconomic Costs on Spatial Priorities for Marine Conservation

PubMed Central

Pressey, Robert L.; Weeks, Rebecca; Andréfouët, Serge; Moloney, James

2016-01-01

Spatial data characteristics have the potential to influence various aspects of prioritising biodiversity areas for systematic conservation planning. There has been some exploration of the combined effects of size of planning units and level of classification of physical environments on the pattern and extent of priority areas. However, these data characteristics have yet to be explicitly investigated in terms of their interaction with different socioeconomic cost data during the spatial prioritisation process. We quantify the individual and interacting effects of three factors—planning-unit size, thematic resolution of reef classes, and spatial variability of socioeconomic costs—on spatial priorities for marine conservation, in typical marine planning exercises that use reef classification maps as a proxy for biodiversity. We assess these factors by creating 20 unique prioritisation scenarios involving combinations of different levels of each factor. Because output data from these scenarios are analogous to ecological data, we applied ecological statistics to determine spatial similarities between reserve designs. All three factors influenced prioritisations to different extents, with cost variability having the largest influence, followed by planning-unit size and thematic resolution of reef classes. The effect of thematic resolution on spatial design depended on the variability of cost data used. In terms of incidental representation of conservation objectives derived from finer-resolution data, scenarios prioritised with uniform cost outperformed those prioritised with variable cost. Following our analyses, we make recommendations to help maximise the spatial and cost efficiency and potential effectiveness of future marine conservation plans in similar planning scenarios. We recommend that planners: employ the smallest planning-unit size practical; invest in data at the highest possible resolution; and, when planning across regional extents with the intention of incidentally representing fine-resolution features, prioritise the whole region with uniform costs rather than using coarse-resolution data on variable costs. PMID:27829042

Sympathy for the Devil: Detailing the Effects of Planning-Unit Size, Thematic Resolution of Reef Classes, and Socioeconomic Costs on Spatial Priorities for Marine Conservation.

PubMed

Cheok, Jessica; Pressey, Robert L; Weeks, Rebecca; Andréfouët, Serge; Moloney, James

2016-01-01

Spatial data characteristics have the potential to influence various aspects of prioritising biodiversity areas for systematic conservation planning. There has been some exploration of the combined effects of size of planning units and level of classification of physical environments on the pattern and extent of priority areas. However, these data characteristics have yet to be explicitly investigated in terms of their interaction with different socioeconomic cost data during the spatial prioritisation process. We quantify the individual and interacting effects of three factors-planning-unit size, thematic resolution of reef classes, and spatial variability of socioeconomic costs-on spatial priorities for marine conservation, in typical marine planning exercises that use reef classification maps as a proxy for biodiversity. We assess these factors by creating 20 unique prioritisation scenarios involving combinations of different levels of each factor. Because output data from these scenarios are analogous to ecological data, we applied ecological statistics to determine spatial similarities between reserve designs. All three factors influenced prioritisations to different extents, with cost variability having the largest influence, followed by planning-unit size and thematic resolution of reef classes. The effect of thematic resolution on spatial design depended on the variability of cost data used. In terms of incidental representation of conservation objectives derived from finer-resolution data, scenarios prioritised with uniform cost outperformed those prioritised with variable cost. Following our analyses, we make recommendations to help maximise the spatial and cost efficiency and potential effectiveness of future marine conservation plans in similar planning scenarios. We recommend that planners: employ the smallest planning-unit size practical; invest in data at the highest possible resolution; and, when planning across regional extents with the intention of incidentally representing fine-resolution features, prioritise the whole region with uniform costs rather than using coarse-resolution data on variable costs.

Investigation of spatial resolution improvement by use of a mouth-insert detector in the helmet PET scanner.

PubMed

Ahmed, Abdella M; Tashima, Hideaki; Yamaya, Taiga

2018-03-01

The dominant factor limiting the intrinsic spatial resolution of a positron emission tomography (PET) system is the size of the crystal elements in the detector. To increase sensitivity and achieve high spatial resolution, it is essential to use advanced depth-of-interaction (DOI) detectors and arrange them close to the subject. The DOI detectors help maintain high spatial resolution by mitigating the parallax error caused by the thickness of the scintillator near the peripheral regions of the field-of-view. As an optimal geometry for a brain PET scanner, with high sensitivity and spatial resolution, we proposed and developed the helmet-chin PET scanner using 54 four-layered DOI detectors consisting of a 16 × 16 × 4 array of GSOZ scintillator crystals with dimensions of 2.8 × 2.8 × 7.5 mm 3 . All the detectors used in the helmet-chin PET scanner had the same spatial resolution. In this study, we conducted a feasibility study of a new add-on detector arrangement for the helmet PET scanner by replacing the chin detector with a segmented crystal cube, having high spatial resolution in all directions, which can be placed inside the mouth. The crystal cube (which we have named the mouth-insert detector) has an array of 20 × 20 × 20 LYSO crystal segments with dimensions of 1 × 1 × 1 mm 3 . Thus, the scanner is formed by the combination of the helmet and mouth-insert detectors, and is referred to as the helmet-mouth-insert PET scanner. The results show that the helmet-mouth-insert PET scanner has comparable sensitivity and improved spatial resolution near the center of the hemisphere, compared to the helmet-chin PET scanner.

Added-values of high spatiotemporal remote sensing data in crop yield estimation

NASA Astrophysics Data System (ADS)

Gao, F.; Anderson, M. C.

2017-12-01

Timely and accurate estimation of crop yield before harvest is critical for food market and administrative planning. Remote sensing derived parameters have been used for estimating crop yield by using either empirical or crop growth models. The uses of remote sensing vegetation index (VI) in crop yield modeling have been typically evaluated at regional and country scales using coarse spatial resolution (a few hundred to kilo-meters) data or assessed over a small region at field level using moderate resolution spatial resolution data (10-100m). Both data sources have shown great potential in capturing spatial and temporal variability in crop yield. However, the added value of data with both high spatial and temporal resolution data has not been evaluated due to the lack of such data source with routine, global coverage. In recent years, more moderate resolution data have become freely available and data fusion approaches that combine data acquired from different spatial and temporal resolutions have been developed. These make the monitoring crop condition and estimating crop yield at field scale become possible. Here we investigate the added value of the high spatial and temporal VI for describing variability of crop yield. The explanatory ability of crop yield based on high spatial and temporal resolution remote sensing data was evaluated in a rain-fed agricultural area in the U.S. Corn Belt. Results show that the fused Landsat-MODIS (high spatial and temporal) VI explains yield variability better than single data source (Landsat or MODIS alone), with EVI2 performing slightly better than NDVI. The maximum VI describes yield variability better than cumulative VI. Even though VI is effective in explaining yield variability within season, the inter-annual variability is more complex and need additional information (e.g. weather, water use and management). Our findings augment the importance of high spatiotemporal remote sensing data and supports new moderate resolution satellite missions for agricultural applications.

Developing a CCD camera with high spatial resolution for RIXS in the soft X-ray range

NASA Astrophysics Data System (ADS)

Soman, M. R.; Hall, D. J.; Tutt, J. H.; Murray, N. J.; Holland, A. D.; Schmitt, T.; Raabe, J.; Schmitt, B.

2013-12-01

The Super Advanced X-ray Emission Spectrometer (SAXES) at the Swiss Light Source contains a high resolution Charge-Coupled Device (CCD) camera used for Resonant Inelastic X-ray Scattering (RIXS). Using the current CCD-based camera system, the energy-dispersive spectrometer has an energy resolution (E/ΔE) of approximately 12,000 at 930 eV. A recent study predicted that through an upgrade to the grating and camera system, the energy resolution could be improved by a factor of 2. In order to achieve this goal in the spectral domain, the spatial resolution of the CCD must be improved to better than 5 μm from the current 24 μm spatial resolution (FWHM). The 400 eV-1600 eV energy X-rays detected by this spectrometer primarily interact within the field free region of the CCD, producing electron clouds which will diffuse isotropically until they reach the depleted region and buried channel. This diffusion of the charge leads to events which are split across several pixels. Through the analysis of the charge distribution across the pixels, various centroiding techniques can be used to pinpoint the spatial location of the X-ray interaction to the sub-pixel level, greatly improving the spatial resolution achieved. Using the PolLux soft X-ray microspectroscopy endstation at the Swiss Light Source, a beam of X-rays of energies from 200 eV to 1400 eV can be focused down to a spot size of approximately 20 nm. Scanning this spot across the 16 μm square pixels allows the sub-pixel response to be investigated. Previous work has demonstrated the potential improvement in spatial resolution achievable by centroiding events in a standard CCD. An Electron-Multiplying CCD (EM-CCD) has been used to improve the signal to effective readout noise ratio achieved resulting in a worst-case spatial resolution measurement of 4.5±0.2 μm and 3.9±0.1 μm at 530 eV and 680 eV respectively. A method is described that allows the contribution of the X-ray spot size to be deconvolved from these worst-case resolution measurements, estimating the spatial resolution to be approximately 3.5 μm and 3.0 μm at 530 eV and 680 eV, well below the resolution limit of 5 μm required to improve the spectral resolution by a factor of 2.

Coarse climate change projections for species living in a fine-scaled world.

PubMed

Nadeau, Christopher P; Urban, Mark C; Bridle, Jon R

2017-01-01

Accurately predicting biological impacts of climate change is necessary to guide policy. However, the resolution of climate data could be affecting the accuracy of climate change impact assessments. Here, we review the spatial and temporal resolution of climate data used in impact assessments and demonstrate that these resolutions are often too coarse relative to biologically relevant scales. We then develop a framework that partitions climate into three important components: trend, variance, and autocorrelation. We apply this framework to map different global climate regimes and identify where coarse climate data is most and least likely to reduce the accuracy of impact assessments. We show that impact assessments for many large mammals and birds use climate data with a spatial resolution similar to the biologically relevant area encompassing population dynamics. Conversely, impact assessments for many small mammals, herpetofauna, and plants use climate data with a spatial resolution that is orders of magnitude larger than the area encompassing population dynamics. Most impact assessments also use climate data with a coarse temporal resolution. We suggest that climate data with a coarse spatial resolution is likely to reduce the accuracy of impact assessments the most in climates with high spatial trend and variance (e.g., much of western North and South America) and the least in climates with low spatial trend and variance (e.g., the Great Plains of the USA). Climate data with a coarse temporal resolution is likely to reduce the accuracy of impact assessments the most in the northern half of the northern hemisphere where temporal climatic variance is high. Our framework provides one way to identify where improving the resolution of climate data will have the largest impact on the accuracy of biological predictions under climate change. © 2016 John Wiley & Sons Ltd.

A Study on the Effects of Spatial Scale on Snow Process in Hyper-Resolution Hydrological Modelling over Mountainous Areas

NASA Astrophysics Data System (ADS)

Garousi Nejad, I.; He, S.; Tang, Q.; Ogden, F. L.; Steinke, R. C.; Frazier, N.; Tarboton, D. G.; Ohara, N.; Lin, H.

2017-12-01

Spatial scale is one of the main considerations in hydrological modeling of snowmelt in mountainous areas. The size of model elements controls the degree to which variability can be explicitly represented versus what needs to be parameterized using effective properties such as averages or other subgrid variability parameterizations that may degrade the quality of model simulations. For snowmelt modeling terrain parameters such as slope, aspect, vegetation and elevation play an important role in the timing and quantity of snowmelt that serves as an input to hydrologic runoff generation processes. In general, higher resolution enhances the accuracy of the simulation since fine meshes represent and preserve the spatial variability of atmospheric and surface characteristics better than coarse resolution. However, this increases computational cost and there may be a scale beyond which the model response does not improve due to diminishing sensitivity to variability and irreducible uncertainty associated with the spatial interpolation of inputs. This paper examines the influence of spatial resolution on the snowmelt process using simulations of and data from the Animas River watershed, an alpine mountainous area in Colorado, USA, using an unstructured distributed physically based hydrological model developed for a parallel computing environment, ADHydro. Five spatial resolutions (30 m, 100 m, 250 m, 500 m, and 1 km) were used to investigate the variations in hydrologic response. This study demonstrated the importance of choosing the appropriate spatial scale in the implementation of ADHydro to obtain a balance between representing spatial variability and the computational cost. According to the results, variation in the input variables and parameters due to using different spatial resolution resulted in changes in the obtained hydrological variables, especially snowmelt, both at the basin-scale and distributed across the model mesh.

High efficiency multishot interleaved spiral-in/out: acquisition for high-resolution BOLD fMRI.

PubMed

Jung, Youngkyoo; Samsonov, Alexey A; Liu, Thomas T; Buracas, Giedrius T

2013-08-01

Growing demand for high spatial resolution blood oxygenation level dependent (BOLD) functional magnetic resonance imaging faces a challenge of the spatial resolution versus coverage or temporal resolution tradeoff, which can be addressed by methods that afford increased acquisition efficiency. Spiral acquisition trajectories have been shown to be superior to currently prevalent echo-planar imaging in terms of acquisition efficiency, and high spatial resolution can be achieved by employing multiple-shot spiral acquisition. The interleaved spiral in/out trajectory is preferred over spiral-in due to increased BOLD signal contrast-to-noise ratio (CNR) and higher acquisition efficiency than that of spiral-out or noninterleaved spiral in/out trajectories (Law & Glover. Magn Reson Med 2009; 62:829-834.), but to date applicability of the multishot interleaved spiral in/out for high spatial resolution imaging has not been studied. Herein we propose multishot interleaved spiral in/out acquisition and investigate its applicability for high spatial resolution BOLD functional magnetic resonance imaging. Images reconstructed from interleaved spiral-in and -out trajectories possess artifacts caused by differences in T2 decay, off-resonance, and k-space errors associated with the two trajectories. We analyze the associated errors and demonstrate that application of conjugate phase reconstruction and spectral filtering can substantially mitigate these image artifacts. After applying these processing steps, the multishot interleaved spiral in/out pulse sequence yields high BOLD CNR images at in-plane resolution below 1 × 1 mm while preserving acceptable temporal resolution (4 s) and brain coverage (15 slices of 2 mm thickness). Moreover, this method yields sufficient BOLD CNR at 1.5 mm isotropic resolution for detection of activation in hippocampus associated with cognitive tasks (Stern memory task). The multishot interleaved spiral in/out acquisition is a promising technique for high spatial resolution BOLD functional magnetic resonance imaging applications. © 2012 Wiley Periodicals, Inc.

Scaling effects on spring phenology detections from MODIS data at multiple spatial resolutions over the contiguous United States

NASA Astrophysics Data System (ADS)

Peng, Dailiang; Zhang, Xiaoyang; Zhang, Bing; Liu, Liangyun; Liu, Xinjie; Huete, Alfredo R.; Huang, Wenjiang; Wang, Siyuan; Luo, Shezhou; Zhang, Xiao; Zhang, Helin

2017-10-01

Land surface phenology (LSP) has been widely retrieved from satellite data at multiple spatial resolutions, but the spatial scaling effects on LSP detection are poorly understood. In this study, we collected enhanced vegetation index (EVI, 250 m) from collection 6 MOD13Q1 product over the contiguous United States (CONUS) in 2007 and 2008, and generated a set of multiple spatial resolution EVI data by resampling 250 m to 2 × 250 m and 3 × 250 m, 4 × 250 m, …, 35 × 250 m. These EVI time series were then used to detect the start of spring season (SOS) at various spatial resolutions. Further the SOS variation across scales was examined at each coarse resolution grid (35 × 250 m ≈ 8 km, refer to as reference grid) and ecoregion. Finally, the SOS scaling effects were associated with landscape fragment, proportion of primary land cover type, and spatial variability of seasonal greenness variation within each reference grid. The results revealed the influences of satellite spatial resolutions on SOS retrievals and the related impact factors. Specifically, SOS significantly varied lineally or logarithmically across scales although the relationship could be either positive or negative. The overall SOS values averaged from spatial resolutions between 250 m and 35 × 250 m at large ecosystem regions were generally similar with a difference less than 5 days, while the SOS values within the reference grid could differ greatly in some local areas. Moreover, the standard deviation of SOS across scales in the reference grid was less than 5 days in more than 70% of area over the CONUS, which was smaller in northeastern than in southern and western regions. The SOS scaling effect was significantly associated with heterogeneity of vegetation properties characterized using land landscape fragment, proportion of primary land cover type, and spatial variability of seasonal greenness variation, but the latter was the most important impact factor.

Visual resolution and contrast sensitivity in two benthic sharks.

PubMed

Ryan, Laura A; Hart, Nathan S; Collin, Shaun P; Hemmi, Jan M

2016-12-15

Sharks have long been described as having 'poor' vision. They are cone monochromats and anatomical estimates suggest they have low spatial resolution. However, there are no direct behavioural measurements of spatial resolution or contrast sensitivity. This study estimates contrast sensitivity and spatial resolution of two species of benthic sharks, the Port Jackson shark, Heterodontus portusjacksoni, and the brown-banded bamboo shark, Chiloscyllium punctatum, by recording eye movements in response to optokinetic stimuli. Both species tracked moving low spatial frequency gratings with weak but consistent eye movements. Eye movements ceased at 0.38 cycles per degree, even for high contrasts, suggesting low spatial resolution. However, at lower spatial frequencies, eye movements were elicited by low contrast gratings, 1.3% and 2.9% contrast in H portusjacksoni and C. punctatum, respectively. Contrast sensitivity was higher than in other vertebrates with a similar spatial resolving power, which may reflect an adaptation to the relatively low contrast encountered in aquatic environments. Optokinetic gain was consistently low and neither species stabilised the gratings on their retina. To check whether restraining the animals affected their optokinetic responses, we also analysed eye movements in free-swimming C. punctatum We found no eye movements that could compensate for body rotations, suggesting that vision may pass through phases of stabilisation and blur during swimming. As C. punctatum is a sedentary benthic species, gaze stabilisation during swimming may not be essential. Our results suggest that vision in sharks is not 'poor' as previously suggested, but optimised for contrast detection rather than spatial resolution. © 2016. Published by The Company of Biologists Ltd.

Study of spatial resolution of coordinate detectors based on Gas Electron Multipliers

NASA Astrophysics Data System (ADS)

Kudryavtsev, V. N.; Maltsev, T. V.; Shekhtman, L. I.

2017-02-01

Spatial resolution of GEM-based tracking detectors is determined in the simulation and measured in the experiments. The simulation includes GEANT4 implemented transport of high energy electrons with careful accounting of atomic relaxation processes including emission of fluorescent photons and Auger electrons and custom post-processing with accounting of diffusion, gas amplification fluctuations, distribution of signals on readout electrodes, electronics noise and particular algorithm of final coordinate calculation (center of gravity). The simulation demonstrates that the minimum of spatial resolution of about 10 μm can be achieved with a gas mixture of Ar -CO2 (75-25 %) at a strips pitch from 250 μm to 300 μm. At a larger pitch the resolution quickly degrades reaching 80-100 μm at a pitch of 460-500 μm. Spatial resolution of low-material triple-GEM detectors for the DEUTERON facility at the VEPP-3 storage ring is measured at the extracted beam facility of the VEPP-4 M collider. One-coordinate resolution of the DEUTERON detector is measured with electron beam of 500 MeV, 1 GeV and 3.5 GeV energies. The determined value of spatial resolution varies in the range from approximately 35 μm to 50 μm for orthogonal tracks in the experiments.

Horizontal Residual Mean Circulation: Evaluation of Spatial Correlations in Coarse Resolution Ocean Models

NASA Astrophysics Data System (ADS)

Li, Y.; McDougall, T. J.

2016-02-01

Coarse resolution ocean models lack knowledge of spatial correlations between variables on scales smaller than the grid scale. Some researchers have shown that these spatial correlations play a role in the poleward heat flux. In order to evaluate the poleward transport induced by the spatial correlations at a fixed horizontal position, an equation is obtained to calculate the approximate transport from velocity gradients. The equation involves two terms that can be added to the quasi-Stokes streamfunction (based on temporal correlations) to incorporate the contribution of spatial correlations. Moreover, these new terms do not need to be parameterized and is ready to be evaluated by using model data directly. In this study, data from a high resolution ocean model have been used to estimate the accuracy of this HRM approach for improving the horizontal property fluxes in coarse-resolution ocean models. A coarse grid is formed by sub-sampling and box-car averaging the fine grid scale. The transport calculated on the coarse grid is then compared to the transport on original high resolution grid scale accumulated over a corresponding number of grid boxes. The preliminary results have shown that the estimate on coarse resolution grids roughly match the corresponding transports on high resolution grids.

Effects of configural processing on the perceptual spatial resolution for face features.

PubMed

Namdar, Gal; Avidan, Galia; Ganel, Tzvi

2015-11-01

Configural processing governs human perception across various domains, including face perception. An established marker of configural face perception is the face inversion effect, in which performance is typically better for upright compared to inverted faces. In two experiments, we tested whether configural processing could influence basic visual abilities such as perceptual spatial resolution (i.e., the ability to detect spatial visual changes). Face-related perceptual spatial resolution was assessed by measuring the just noticeable difference (JND) to subtle positional changes between specific features in upright and inverted faces. The results revealed robust inversion effect for spatial sensitivity to configural-based changes, such as the distance between the mouth and the nose, or the distance between the eyes and the nose. Critically, spatial resolution for face features within the region of the eyes (e.g., the interocular distance between the eyes) was not affected by inversion, suggesting that the eye region operates as a separate 'gestalt' unit which is relatively immune to manipulations that would normally hamper configural processing. Together these findings suggest that face orientation modulates fundamental psychophysical abilities including spatial resolution. Furthermore, they indicate that classic psychophysical methods can be used as a valid measure of configural face processing. Copyright © 2015 Elsevier Ltd. All rights reserved.

Super resolution PLIF demonstrated in turbulent jet flows seeded with I2

NASA Astrophysics Data System (ADS)

Xu, Wenjiang; Liu, Ning; Ma, Lin

2018-05-01

Planar laser induced fluorescence (PLIF) represents an indispensable tool for flow and flame imaging. However, the PLIF technique suffers from limited spatial resolution or blurring in many situations, which restricts its applicability and capability. This work describes a new method, named SR-PLIF (super-resolution PLIF), to overcome these limitations and enhance the capability of PLIF. The method uses PLIF images captured simultaneously from two (or more) orientations to reconstruct a final PLIF image with resolution enhanced or blurring removed. This paper reports the development of the reconstruction algorithm, and the experimental demonstration of the SR-PLIF method both with controlled samples and with turbulent flows seeded with iodine vapor. Using controlled samples with two cameras, the spatial resolution in the best case was improved from 0.06 mm in the projections to 0.03 mm in the SR image, in terms of the spreading width of a sharp edge. With turbulent flows, an image sharpness measure was developed to quantify the spatial resolution, and SR reconstruction with two cameras can effectively improve the spatial resolution compared to the projections in terms of the sharpness measure.

Multimodality hard-x-ray imaging of a chromosome with nanoscale spatial resolution

DOE PAGES

Yan, Hanfei; Nazaretski, Evgeny; Lauer, Kenneth R.; ...

2016-02-05

Here, we developed a scanning hard x-ray microscope using a new class of x-ray nano-focusing optic called a multilayer Laue lens and imaged a chromosome with nanoscale spatial resolution. The combination of the hard x-ray's superior penetration power, high sensitivity to elemental composition, high spatial-resolution and quantitative analysis creates a unique tool with capabilities that other microscopy techniques cannot provide. Using this microscope, we simultaneously obtained absorption-, phase-, and fluorescence-contrast images of Pt-stained human chromosome samples. The high spatial-resolution of the microscope and its multi-modality imaging capabilities enabled us to observe the internal ultra-structures of a thick chromosome without sectioningmore » it.« less

Multimodality hard-x-ray imaging of a chromosome with nanoscale spatial resolution

DOE Office of Scientific and Technical Information (OSTI.GOV)

Yan, Hanfei; Nazaretski, Evgeny; Lauer, Kenneth R.

Here, we developed a scanning hard x-ray microscope using a new class of x-ray nano-focusing optic called a multilayer Laue lens and imaged a chromosome with nanoscale spatial resolution. The combination of the hard x-ray's superior penetration power, high sensitivity to elemental composition, high spatial-resolution and quantitative analysis creates a unique tool with capabilities that other microscopy techniques cannot provide. Using this microscope, we simultaneously obtained absorption-, phase-, and fluorescence-contrast images of Pt-stained human chromosome samples. The high spatial-resolution of the microscope and its multi-modality imaging capabilities enabled us to observe the internal ultra-structures of a thick chromosome without sectioningmore » it.« less

Land cover mapping and change detection in urban watersheds using QuickBird high spatial resolution satellite imagery

NASA Astrophysics Data System (ADS)

Hester, David Barry

The objective of this research was to develop methods for urban land cover analysis using QuickBird high spatial resolution satellite imagery. Such imagery has emerged as a rich commercially available remote sensing data source and has enjoyed high-profile broadcast news media and Internet applications, but methods of quantitative analysis have not been thoroughly explored. The research described here consists of three studies focused on the use of pan-sharpened 61-cm spatial resolution QuickBird imagery, the spatial resolution of which is the highest of any commercial satellite. In the first study, a per-pixel land cover classification method is developed for use with this imagery. This method utilizes a per-pixel classification approach to generate an accurate six-category high spatial resolution land cover map of a developing suburban area. The primary objective of the second study was to develop an accurate land cover change detection method for use with QuickBird land cover products. This work presents an efficient fuzzy framework for transforming map uncertainty into accurate and meaningful high spatial resolution land cover change analysis. The third study described here is an urban planning application of the high spatial resolution QuickBird-based land cover product developed in the first study. This work both meaningfully connects this exciting new data source to urban watershed management and makes an important empirical contribution to the study of suburban watersheds. Its analysis of residential roads and driveways as well as retail parking lots sheds valuable light on the impact of transportation-related land use on the suburban landscape. Broadly, these studies provide new methods for using state-of-the-art remote sensing data to inform land cover analysis and urban planning. These methods are widely adaptable and produce land cover products that are both meaningful and accurate. As additional high spatial resolution satellites are launched and the cost of high resolution imagery continues to decline, this research makes an important contribution to this exciting era in the science of remote sensing.

Integrating Eddy Covariance, Penman-Monteith and METRIC based Evapotranspiration estimates to generate high resolution space-time ET over the Brazos River Basin

NASA Astrophysics Data System (ADS)

Mbabazi, D.; Mohanty, B.; Gaur, N.

2017-12-01

Evapotranspiration (ET) is an important component of the water and energy balance and accounts for 60 -70% of precipitation losses. However, accurate estimates of ET are difficult to quantify at varying spatial and temporal scales. Eddy covariance methods estimate ET at high temporal resolutions but without capturing the spatial variation in ET within its footprint. On the other hand, remote sensing methods using Landsat imagery provide ET with high spatial resolution but low temporal resolution (16 days). In this study, we used both eddy covariance and remote sensing methods to generate high space-time resolution ET. Daily, monthly and seasonal ET estimates were obtained using the eddy covariance (EC) method, Penman-Monteith (PM) and Mapping Evapotranspiration with Internalized Calibration (METRIC) models to determine cotton and native prairie ET dynamics in the Brazos river basin characterized by varying hydro-climatic and geological gradients. Daily estimates of spatially distributed ET (30 m resolution) were generated using spatial autocorrelation and temporal interpolations between the EC flux variable footprints and METRIC ET for the 2016 and 2017 growing seasons. A comparison of the 2016 and 2017 preliminary daily ET estimates showed similar ET dynamics/trends among the EC, PM and METRIC methods, and 5-20% differences in seasonal ET estimates. This study will improve the spatial estimates of EC ET and temporal resolution of satellite derived ET thus providing better ET data for water use management.

Effects of finite hot-wire spatial resolution on turbulence statistics and velocity spectra in a round turbulent free jet

NASA Astrophysics Data System (ADS)

Sadeghi, Hamed; Lavoie, Philippe; Pollard, Andrew

2018-03-01

The effect of finite hot-wire spatial resolution on turbulence statistics and velocity spectra in a round turbulent free jet is investigated. To quantify spatial resolution effects, measurements were taken using a nano-scale thermal anemometry probe (NSTAP) and compared to results from conventional hot-wires with sensing lengths of l=0.5 and 1 mm. The NSTAP has a sensing length significantly smaller than the Kolmogorov length scale η for the present experimental conditions, whereas the sensing lengths for the conventional probes are larger than η. The spatial resolution is found to have a significant impact on the dissipation both on and off the jet centreline with the NSTAP results exceeding those obtained from the conventional probes. The resolution effects along the jet centreline are adequately predicted using a Wyngaard-type spectral technique (Wyngaard in J Sci Instr 1(2):1105-1108,1968), but additional attenuation on the measured turbulence quantities are observed off the centreline. The magnitude of this attenuation is a function of both the ratio of wire length to Kolmogorov length scale and the magnitude of the shear. The effect of spatial resolution is noted to have an impact on the power-law decay parameters for the turbulent kinetic energy that is computed. The effect of spatial filtering on the streamwise dissipation energy spectra is also considered. Empirical functions are proposed to estimate the effect of finite resolution, which take into account the mean shear.

Spatial resolution versus contrast trade-off enhancement in high-resolution surface plasmon resonance imaging (SPRI) by metal surface nanostructure design.

PubMed

Banville, Frederic A; Moreau, Julien; Sarkar, Mitradeep; Besbes, Mondher; Canva, Michael; Charette, Paul G

2018-04-16

Surface plasmon resonance imaging (SPRI) is an optical near-field method used for mapping the spatial distribution of chemical/physical perturbations above a metal surface without exogenous labeling. Currently, the majority of SPRI systems are used in microarray biosensing, requiring only modest spatial resolution. There is increasing interest in applying SPRI for label-free near-field imaging of biological cells to study cell/surface interactions. However, the required resolution (sub-µm) greatly exceeds what current systems can deliver. Indeed, the attenuation length of surface plasmon polaritons (SPP) severely limits resolution along one axis, typically to tens of µm. Strategies to date for improving spatial resolution result in a commensurate deterioration in other imaging parameters. Unlike the smooth metal surfaces used in SPRI that support purely propagating surface modes, nanostructured metal surfaces support "hybrid" SPP modes that share attributes from both propagating and localized modes. We show that these hybrid modes are especially well-suited to high-resolution imaging and demonstrate how the nanostructure geometry can be designed to achieve sub-µm resolution while mitigating the imaging parameter trade-off according to an application-specific optimum.

Two-photon imaging of spatially extended neuronal network dynamics with high temporal resolution.

PubMed

Lillis, Kyle P; Eng, Alfred; White, John A; Mertz, Jerome

2008-07-30

We describe a simple two-photon fluorescence imaging strategy, called targeted path scanning (TPS), to monitor the dynamics of spatially extended neuronal networks with high spatiotemporal resolution. Our strategy combines the advantages of mirror-based scanning, minimized dead time, ease of implementation, and compatibility with high-resolution low-magnification objectives. To demonstrate the performance of TPS, we monitor the calcium dynamics distributed across an entire juvenile rat hippocampus (>1.5mm), at scan rates of 100 Hz, with single cell resolution and single action potential sensitivity. Our strategy for fast, efficient two-photon microscopy over spatially extended regions provides a particularly attractive solution for monitoring neuronal population activity in thick tissue, without sacrificing the signal-to-noise ratio or high spatial resolution associated with standard two-photon microscopy. Finally, we provide the code to make our technique generally available.

High Resolution Tissue Imaging Using the Single-probe Mass Spectrometry under Ambient Conditions

NASA Astrophysics Data System (ADS)

Rao, Wei; Pan, Ning; Yang, Zhibo

2015-06-01

Ambient mass spectrometry imaging (MSI) is an emerging field with great potential for the detailed spatial analysis of biological samples with minimal pretreatment. We have developed a miniaturized sampling and ionization device, the Single-probe, which uses in-situ surface micro-extraction to achieve high detection sensitivity and spatial resolution during MSI experiments. The Single-probe was coupled to a Thermo LTQ Orbitrap XL mass spectrometer and was able to create high spatial and high mass resolution MS images at 8 ± 2 and 8.5 μm on flat polycarbonate microscope slides and mouse kidney sections, respectively, which are among the highest resolutions available for ambient MSI techniques. Our proof-of-principle experiments indicate that the Single-probe MSI technique has the potential to obtain ambient MS images with very high spatial resolutions with minimal sample preparation, which opens the possibility for subcellular ambient tissue MSI to be performed in the future.

High Speed Computational Ghost Imaging via Spatial Sweeping

NASA Astrophysics Data System (ADS)

Wang, Yuwang; Liu, Yang; Suo, Jinli; Situ, Guohai; Qiao, Chang; Dai, Qionghai

2017-03-01

Computational ghost imaging (CGI) achieves single-pixel imaging by using a Spatial Light Modulator (SLM) to generate structured illuminations for spatially resolved information encoding. The imaging speed of CGI is limited by the modulation frequency of available SLMs, and sets back its practical applications. This paper proposes to bypass this limitation by trading off SLM’s redundant spatial resolution for multiplication of the modulation frequency. Specifically, a pair of galvanic mirrors sweeping across the high resolution SLM multiply the modulation frequency within the spatial resolution gap between SLM and the final reconstruction. A proof-of-principle setup with two middle end galvanic mirrors achieves ghost imaging as fast as 42 Hz at 80 × 80-pixel resolution, 5 times faster than state-of-the-arts, and holds potential for one magnitude further multiplication by hardware upgrading. Our approach brings a significant improvement in the imaging speed of ghost imaging and pushes ghost imaging towards practical applications.

Edge-Preserving Image Smoothing Constraint in Multivariate Curve Resolution-Alternating Least Squares (MCR-ALS) of Hyperspectral Data.

PubMed

Hugelier, Siewert; Vitale, Raffaele; Ruckebusch, Cyril

2018-03-01

This article explores smoothing with edge-preserving properties as a spatial constraint for the resolution of hyperspectral images with multivariate curve resolution-alternating least squares (MCR-ALS). For each constrained component image (distribution map), irrelevant spatial details and noise are smoothed applying an L 1 - or L 0 -norm penalized least squares regression, highlighting in this way big changes in intensity of adjacent pixels. The feasibility of the constraint is demonstrated on three different case studies, in which the objects under investigation are spatially clearly defined, but have significant spectral overlap. This spectral overlap is detrimental for obtaining a good resolution and additional spatial information should be provided. The final results show that the spatial constraint enables better image (map) abstraction, artifact removal, and better interpretation of the results obtained, compared to a classical MCR-ALS analysis of hyperspectral images.

Implications of sensor design for coral reef detection: Upscaling ground hyperspectral imagery in spatial and spectral scales

NASA Astrophysics Data System (ADS)

Caras, Tamir; Hedley, John; Karnieli, Arnon

2017-12-01

Remote sensing offers a potential tool for large scale environmental surveying and monitoring. However, remote observations of coral reefs are difficult especially due to the spatial and spectral complexity of the target compared to sensor specifications as well as the environmental implications of the water medium above. The development of sensors is driven by technological advances and the desired products. Currently, spaceborne systems are technologically limited to a choice between high spectral resolution and high spatial resolution, but not both. The current study explores the dilemma of whether future sensor design for marine monitoring should prioritise on improving their spatial or spectral resolution. To address this question, a spatially and spectrally resampled ground-level hyperspectral image was used to test two classification elements: (1) how the tradeoff between spatial and spectral resolutions affects classification; and (2) how a noise reduction by majority filter might improve classification accuracy. The studied reef, in the Gulf of Aqaba (Eilat), Israel, is heterogeneous and complex so the local substrate patches are generally finer than currently available imagery. Therefore, the tested spatial resolution was broadly divided into four scale categories from five millimeters to one meter. Spectral resolution resampling aimed to mimic currently available and forthcoming spaceborne sensors such as (1) Environmental Mapping and Analysis Program (EnMAP) that is characterized by 25 bands of 6.5 nm width; (2) VENμS with 12 narrow bands; and (3) the WorldView series with broadband multispectral resolution. Results suggest that spatial resolution should generally be prioritized for coral reef classification because the finer spatial scale tested (pixel size < 0.1 m) may compensate for some low spectral resolution drawbacks. In this regard, it is shown that the post-classification majority filtering substantially improves the accuracy of all pixel sizes up to the point where the kernel size reaches the average unit size (pixel < 0.25 m). However, careful investigation as to the effect of band distribution and choice could improve the sensor suitability for the marine environment task. This in mind, while the focus in this study was on the technologically limited spaceborne design, aerial sensors may presently provide an opportunity to implement the suggested setup.

Super-resolution reconstruction of diffusion parameters from diffusion-weighted images with different slice orientations.

PubMed

Van Steenkiste, Gwendolyn; Jeurissen, Ben; Veraart, Jelle; den Dekker, Arnold J; Parizel, Paul M; Poot, Dirk H J; Sijbers, Jan

2016-01-01

Diffusion MRI is hampered by long acquisition times, low spatial resolution, and a low signal-to-noise ratio. Recently, methods have been proposed to improve the trade-off between spatial resolution, signal-to-noise ratio, and acquisition time of diffusion-weighted images via super-resolution reconstruction (SRR) techniques. However, during the reconstruction, these SRR methods neglect the q-space relation between the different diffusion-weighted images. An SRR method that includes a diffusion model and directly reconstructs high resolution diffusion parameters from a set of low resolution diffusion-weighted images was proposed. Our method allows an arbitrary combination of diffusion gradient directions and slice orientations for the low resolution diffusion-weighted images, optimally samples the q- and k-space, and performs motion correction with b-matrix rotation. Experiments with synthetic data and in vivo human brain data show an increase of spatial resolution of the diffusion parameters, while preserving a high signal-to-noise ratio and low scan time. Moreover, the proposed SRR method outperforms the previous methods in terms of the root-mean-square error. The proposed SRR method substantially increases the spatial resolution of MRI that can be obtained in a clinically feasible scan time. © 2015 Wiley Periodicals, Inc.

Camera system resolution and its influence on digital image correlation

DOE PAGES

Reu, Phillip L.; Sweatt, William; Miller, Timothy; ...

2014-09-21

Digital image correlation (DIC) uses images from a camera and lens system to make quantitative measurements of the shape, displacement, and strain of test objects. This increasingly popular method has had little research on the influence of the imaging system resolution on the DIC results. This paper investigates the entire imaging system and studies how both the camera and lens resolution influence the DIC results as a function of the system Modulation Transfer Function (MTF). It will show that when making spatial resolution decisions (including speckle size) the resolution limiting component should be considered. A consequence of the loss ofmore » spatial resolution is that the DIC uncertainties will be increased. This is demonstrated using both synthetic and experimental images with varying resolution. The loss of image resolution and DIC accuracy can be compensated for by increasing the subset size, or better, by increasing the speckle size. The speckle-size and spatial resolution are now a function of the lens resolution rather than the more typical assumption of the pixel size. The study will demonstrate the tradeoffs associated with limited lens resolution.« less

Attenuated total reflection-Fourier transform infrared imaging of large areas using inverted prism crystals and combining imaging and mapping.

PubMed

Chan, K L Andrew; Kazarian, Sergei G

2008-10-01

Attenuated total reflection-Fourier transform infrared (ATR-FT-IR) imaging is a very useful tool for capturing chemical images of various materials due to the simple sample preparation and the ability to measure wet samples or samples in an aqueous environment. However, the size of the array detector used for image acquisition is often limited and there is usually a trade off between spatial resolution and the field of view (FOV). The combination of mapping and imaging can be used to acquire images with a larger FOV without sacrificing spatial resolution. Previous attempts have demonstrated this using an infrared microscope and a Germanium hemispherical ATR crystal to achieve images of up to 2.5 mm x 2.5 mm but with varying spatial resolution and depth of penetration across the imaged area. In this paper, we demonstrate a combination of mapping and imaging with a different approach using an external optics housing for large ATR accessories and inverted ATR prisms to achieve ATR-FT-IR images with a large FOV and reasonable spatial resolution. The results have shown that a FOV of 10 mm x 14 mm can be obtained with a spatial resolution of approximately 40-60 microm when using an accessory that gives no magnification. A FOV of 1.3 mm x 1.3 mm can be obtained with spatial resolution of approximately 15-20 microm when using a diamond ATR imaging accessory with 4x magnification. No significant change in image quality such as spatial resolution or depth of penetration has been observed across the whole FOV with this method and the measurement time was approximately 15 minutes for an image consisting of 16 image tiles.

Evaluating the effect of remote sensing image spatial resolution on soil exchangeable potassium prediction models in smallholder farm settings.

PubMed

Xu, Yiming; Smith, Scot E; Grunwald, Sabine; Abd-Elrahman, Amr; Wani, Suhas P

2017-09-15

Major end users of Digital Soil Mapping (DSM) such as policy makers and agricultural extension workers are faced with choosing the appropriate remote sensing data. The objective of this research is to analyze the spatial resolution effects of different remote sensing images on soil prediction models in two smallholder farms in Southern India called Kothapally (Telangana State), and Masuti (Karnataka State), and provide empirical guidelines to choose the appropriate remote sensing images in DSM. Bayesian kriging (BK) was utilized to characterize the spatial pattern of exchangeable potassium (K ex ) in the topsoil (0-15 cm) at different spatial resolutions by incorporating spectral indices from Landsat 8 (30 m), RapidEye (5 m), and WorldView-2/GeoEye-1/Pleiades-1A images (2 m). Some spectral indices such as band reflectances, band ratios, Crust Index and Atmospherically Resistant Vegetation Index from multiple images showed relatively strong correlations with soil K ex in two study areas. The research also suggested that fine spatial resolution WorldView-2/GeoEye-1/Pleiades-1A-based and RapidEye-based soil prediction models would not necessarily have higher prediction performance than coarse spatial resolution Landsat 8-based soil prediction models. The end users of DSM in smallholder farm settings need select the appropriate spectral indices and consider different factors such as the spatial resolution, band width, spectral resolution, temporal frequency, cost, and processing time of different remote sensing images. Overall, remote sensing-based Digital Soil Mapping has potential to be promoted to smallholder farm settings all over the world and help smallholder farmers implement sustainable and field-specific soil nutrient management scheme. Copyright © 2017 Elsevier Ltd. All rights reserved.

Mineral Physicochemistry based Geoscience Products for Mapping the Earth's Surface and Subsurface

NASA Astrophysics Data System (ADS)

Laukamp, C.; Cudahy, T.; Caccetta, M.; Haest, M.; Rodger, A.; Western Australian Centre of Excellence3D Mineral Mapping

2011-12-01

Mineral maps derived from remotes sensing data can be used to address geological questions about mineral systems important for exploration and mining. This paper focuses on the application of geoscience-tuned multi- and hyperspectral sensors (e.g. ASTER, HyMap) and the methods to routinely create meaningful higher level geoscience products from these data sets. The vision is a 3D mineral map of the earth's surface and subsurface. Understanding the physicochemistry of rock forming minerals and the related diagnostic absorption features in the visible, near, mid and far infrared is a key for mineral mapping. For this, reflectance spectra obtained with lab based visible and infrared spectroscopic (VIRS) instruments (e.g. Bruker Hemisphere Vertex 70) are compared to various remote and proximal sensing techniques. Calibration of the various sensor types is a major challenge with any such comparisons. The spectral resolution of the respective instruments and the band positions are two of the main factors governing the ability to identify mineral groups or mineral species and compositions of those. The routine processing method employed by the Western Australian Centre of Excellence for 3D Mineral Mapping (http://c3dmm.csiro.au) is a multiple feature extraction method (MFEM). This method targets mineral specific absorption features rather than relying on spectral libraries or the need to find pure endmembers. The principle behind MFEM allows us to easily compare hyperspectral surface and subsurface data, laying the foundation for a seamless and accurate 3-dimensional mineral map. The advantage of VIRS techniques for geoscientific applications is the ability to deliver quantitative mineral information over multiple scales. For example, C3DMM is working towards a suite of ASTER-derived maps covering the Australian continent, scheduled for publication in 2012. A suite of higher level geoscience products of Western Australia (e.g. AlOH group abundance and composition) are now available. The multispectral satellite data can be integrated with hyperspectral airborne and drill core data (e.g. HyLogging), which is demonstrated by various case studies ranging from Channel Iron Deposits in the Hamersley Basin (WA) to various Australian orogenic Au deposits. Comparison with airborne and field hyperspectral or lab-based VIRS, as well as independent analyses such as XRD and geochemistry, enables us to deliver cross-calibrated geoscience products derived from the whole suite of geoscience tuned multi- and hyperspectral technologies. Kaolin crystallinity and hematite-goethite ratio for characterization of regolith, and Tschermak substitution in white micas for mapping of chemical gradients associated with hydrothermal ore deposits are a few of the multiple examples where 3D mineral maps can help to resolve geological questions.

Whole-animal imaging with high spatio-temporal resolution

NASA Astrophysics Data System (ADS)

Chhetri, Raghav; Amat, Fernando; Wan, Yinan; Höckendorf, Burkhard; Lemon, William C.; Keller, Philipp J.

2016-03-01

We developed isotropic multiview (IsoView) light-sheet microscopy in order to image fast cellular dynamics, such as cell movements in an entire developing embryo or neuronal activity throughput an entire brain or nervous system, with high resolution in all dimensions, high imaging speeds, good physical coverage and low photo-damage. To achieve high temporal resolution and high spatial resolution at the same time, IsoView microscopy rapidly images large specimens via simultaneous light-sheet illumination and fluorescence detection along four orthogonal directions. In a post-processing step, these four views are then combined by means of high-throughput multiview deconvolution to yield images with a system resolution of ≤ 450 nm in all three dimensions. Using IsoView microscopy, we performed whole-animal functional imaging of Drosophila embryos and larvae at a spatial resolution of 1.1-2.5 μm and at a temporal resolution of 2 Hz for up to 9 hours. We also performed whole-brain functional imaging in larval zebrafish and multicolor imaging of fast cellular dynamics across entire, gastrulating Drosophila embryos with isotropic, sub-cellular resolution. Compared with conventional (spatially anisotropic) light-sheet microscopy, IsoView microscopy improves spatial resolution at least sevenfold and decreases resolution anisotropy at least threefold. Compared with existing high-resolution light-sheet techniques, such as lattice lightsheet microscopy or diSPIM, IsoView microscopy effectively doubles the penetration depth and provides subsecond temporal resolution for specimens 400-fold larger than could previously be imaged.

The Use of Coarse Resolution Satellite Imagery to Predict Human Puumala Virus Epidemics in Sweden.

DTIC Science & Technology

1992-09-11

the adverse effects on NDVI data quality can occur in both the spatial and temporal dimension. In other words, a specific pixel value recorded in...are compared to the land-oriented systems.22 On the other hand, the very course spatial resolution has the advantage of greatly reducing the volume...necessary on the scale of individual fields, in which case LANDSAT-TM has higher spatial resolution ; and secondly, when specific

Investigation of noise properties in grating-based x-ray phase tomography with reverse projection method

NASA Astrophysics Data System (ADS)

Bao, Yuan; Wang, Yan; Gao, Kun; Wang, Zhi-Li; Zhu, Pei-Ping; Wu, Zi-Yu

2015-10-01

The relationship between noise variance and spatial resolution in grating-based x-ray phase computed tomography (PCT) imaging is investigated with reverse projection extraction method, and the noise variances of the reconstructed absorption coefficient and refractive index decrement are compared. For the differential phase contrast method, the noise variance in the differential projection images follows the same inverse-square law with spatial resolution as in conventional absorption-based x-ray imaging projections. However, both theoretical analysis and simulations demonstrate that in PCT the noise variance of the reconstructed refractive index decrement scales with spatial resolution follows an inverse linear relationship at fixed slice thickness, while the noise variance of the reconstructed absorption coefficient conforms with the inverse cubic law. The results indicate that, for the same noise variance level, PCT imaging may enable higher spatial resolution than conventional absorption computed tomography (ACT), while ACT benefits more from degraded spatial resolution. This could be a useful guidance in imaging the inner structure of the sample in higher spatial resolution. Project supported by the National Basic Research Program of China (Grant No. 2012CB825800), the Science Fund for Creative Research Groups, the Knowledge Innovation Program of the Chinese Academy of Sciences (Grant Nos. KJCX2-YW-N42 and Y4545320Y2), the National Natural Science Foundation of China (Grant Nos. 11475170, 11205157, 11305173, 11205189, 11375225, 11321503, 11179004, and U1332109).

The Influence of Spatial Resolutions on the Retrieval Accuracy of Sea Surface Wind Speed with Cross-polarized C-band SAR images

NASA Astrophysics Data System (ADS)

Zhang, K.; Han, B.; Mansaray, L. R.; Xu, X.; Guo, Q.; Jingfeng, H.

2017-12-01

Synthetic aperture radar (SAR) instruments on board satellites are valuable for high-resolution wind field mapping, especially for coastal studies. Since the launch of Sentinel-1A on April 3, 2014, followed by Sentinel-1B on April 25, 2016, large amount of C-band SAR data have been added to a growing accumulation of SAR datasets (ERS-1/2, RADARSAT-1/2, ENVISAT). These new developments are of great significance for a wide range of applications in coastal sea areas, especially for high spatial resolution wind resource assessment, in which the accuracy of retrieved wind fields is extremely crucial. Recently, it is reported that wind speeds can also be retrieved from C-band cross-polarized SAR images, which is an important complement to wind speed retrieval from co-polarization. However, there is no consensus on the optimal resolution for wind speed retrieval from cross-polarized SAR images. This paper presents a comparison strategy for investigating the influence of spatial resolutions on sea surface wind speed retrieval accuracy with cross-polarized SAR images. Firstly, for wind speeds retrieved from VV-polarized images, the optimal geophysical C-band model (CMOD) function was selected among four CMOD functions. Secondly, the most suitable C-band cross-polarized ocean (C-2PO) model was selected between two C-2POs for the VH-polarized image dataset. Then, the VH-wind speeds retrieved by the selected C-2PO were compared with the VV-polarized sea surface wind speeds retrieved using the optimal CMOD, which served as reference, at different spatial resolutions. Results show that the VH-polarized wind speed retrieval accuracy increases rapidly with the decrease in spatial resolutions from 100 m to 1000 m, with a drop in RMSE of 42%. However, the improvement in wind speed retrieval accuracy levels off with spatial resolutions decreasing from 1000 m to 5000 m. This demonstrates that the pixel spacing of 1 km may be the compromising choice for the tradeoff between the spatial resolution and wind speed retrieval accuracy with cross-polarized images obtained from RADASAT-2 fine quad polarization mode. Figs. 1 illustrate the variation of the following statistical parameters: Bias, Corr, R2, RMSE and STD as a function of spatial resolution.

Ammonium on Ceres

NASA Astrophysics Data System (ADS)

Ammannito, E.; De Sanctis, M. C.; Carrorro, F. G.; Ciarniello, M.; Combe, J. P.; De Angelis, S.; Ehlmann, B. L.; Frigeri, A.; Longobardo, A.; Mugnuolo, R.; Marchi, S.; Palomba, E.; Raymond, C. A.; Salatti, M.; Tosi, F.; Zambon, F.; Russell, C. T.

2017-12-01

Since January 2015, the surface of Ceres has been studied by the Dawn spacecraft through the measurements from the three instruments on board (1). The VIR imaging spectrometer, sensitive to the spectral range 0.25 -5.0 μm, provided information on the surficial composition of Ceres at resolutions ranging from few kilometers to about one hundred meters (2). Analysis of VIR reflectance data revealed that the average spectrum of Ceres is compatible with a mixture of low-albedo minerals, Mg- phyllosilicates, ammoniated clays, and Mg- carbonates, (3) confirming previous studies based on ground based spectra (4, 5). Mineralogical maps of the surface at about 1 km/px show that the components identified in the average spectrum are present all across the surface with variations in their relative abundance and chemical composition (6, 7). While the ammoniated clays have been already studied (6), the presence nature and distribution of additional ammoniated species has never been investigated in detail, although the spectral analysis of the bright faculae within Occator crater already revealed the potential presence of ammonium salts (8). Since the position and shape of the ammonium absorption in the VIS-NIR region are function of the hosting mineral specie (8), we did an inventory and characterization of the ammonium-rich regions, in order to analyze their spectral properties. In addition to the presence of ammonium, also the identification of the hosting species has implication for the evolution of Ceres. Our study, therefore, is a step forward in understanding of evolutionary pathway of Ceres. References: (1) Russell, C. T. et al., Science, 2016. (2) De Sanctis M.C. et al., Space Science Reviews, 2011. (3) De Sanctis M.C. et al., Nature, 2015. (4) King T. et al. Science, 1992. (5) Rivkin A.S. et al. Icarus, 2006. (6) Ammannito E. et al., Science, 2016. (7) Carrozzo F.G. et al., Science Advances, in revision. (8) De Sanctis et al., Nature, 2016. (9) Berg et al., Icarus, 2016.

Mineralogical Analysis of the Oppia Quadrangle of Asteroid (4) Vesta: Evidence for Occurrence of Moderate-Reflectance Hydrated Minerals

NASA Technical Reports Server (NTRS)

Tosi, F.; Frigeri, A.; Combe, J.-Ph.; Zambon, F.; De Sanctis, M. C.; Ammannito, E.; Longobardo, A.; Hoffmann, M.; Nathues, A.; Garry, W. B.;

Regional forest land cover characterisation using medium spatial resolution satellite data

USGS Publications Warehouse

Huang, Chengquan; Homer, Collin G.; Yang, Limin; Wulder, Michael A.; Franklin, Steven E.

2003-01-01

Increasing demands on forest resources require comprehensive, consistent and up-to-date information on those resources at spatial scales appropriate for management decision-making and for scientific analysis. While such information can be derived using coarse spatial resolution satellite data (e.g. Tucker et al. 1984; Zhu and Evans 1994; Cihlar et al. 1996; Cihlar et al., Chapter 12), many regional applications require more spatial and thematic details than can be derived by using coarse resolution imagery. High spatial resolution satellite data such as IKONOS and Quick Bird images (Aplin et al. 1997), though usable for deriving detailed forest information (Culvenor, Chapter 9), are currently not feasible for wall-to-wall regional applications because of extremely high data cost, huge data volume, and lack of contiguous coverage over large areas. Forest studies over large areas have often been accomplished using data acquired by intermediate spatial resolution sensor systems, including the Multi-Spectral Scanner (MSS), Thematic Mapper (TM) and the Enhanced Thematic Mapper Plus (ETM+) of Landsat, the High Resolution Visible (HRV) of the Systeme Pour l'Observation de la Terre (SPOT), and the Linear Image Self-Scanner (LISS) of the Indian Remote Sensing satellite. These sensor systems are more appropriate for regional applications because they can routinely produce spatially contiguous data over large areas at relatively low cost, and can be used to derive a host of forest attributes (e.g. Cohen et al. 1995; Kimes et al. 1999; Cohen et al. 2001; Huang et al. 2001; Sugumaran 2001). Of the above intermediate spatial resolution satellites, Landsat is perhaps the most widely used in various types of land remote sensing applications, in part because it has provided more extensive spatial and temporal coverage of the globe than any other intermediate resolution satellite. Spatially contiguous Landsat data have been developed for many regions of the globe (e.g. Lunetta and Sturdevant 1993; Fuller et al. 1994b; Skole et al. 1997), and a circa 1990 Landsat image data set covering the entire land area of the globe has also been developed recently (Jones and Smith 2001). An acquisition strategy aimed at acquiring at least one cloud free image per year for the entire land area of the globe has been initiated for Landsat-7 (Arvidson et al. 2001). This will probably ensure the continued dominance of Landsat in the near future.

Spatial Resolution, Grayscale, and Error Diffusion Trade-offs: Impact on Display System Design

NASA Technical Reports Server (NTRS)

Gille, Jennifer L. (Principal Investigator)

1996-01-01

We examine technology trade-offs related to grayscale resolution, spatial resolution, and error diffusion for tessellated display systems. We present new empirical results from our psychophysical study of these trade-offs and compare them to the predictions of a model of human vision.

DOE Office of Scientific and Technical Information (OSTI.GOV)

Krishnan, Venkat; Cole, Wesley

This poster is based on the paper of the same name, presented at the IEEE Power & Energy Society General Meeting, July18, 2016. Power sector capacity expansion models (CEMs) have a broad range of spatial resolutions. This paper uses the Regional Energy Deployment System (ReEDS) model, a long-term national scale electric sector CEM, to evaluate the value of high spatial resolution for CEMs. ReEDS models the United States with 134 load balancing areas (BAs) and captures the variability in existing generation parameters, future technology costs, performance, and resource availability using very high spatial resolution data, especially for wind and solarmore » modeled at 356 resource regions. In this paper we perform planning studies at three different spatial resolutions - native resolution (134 BAs), state-level, and NERC region level - and evaluate how results change under different levels of spatial aggregation in terms of renewable capacity deployment and location, associated transmission builds, and system costs. The results are used to ascertain the value of high geographically resolved models in terms of their impact on relative competitiveness among renewable energy resources.« less

DOE Office of Scientific and Technical Information (OSTI.GOV)

Gao, Lan, E-mail: lgao@pppl.gov; Hill, K. W.; Bitter, M.

A high spatial resolution of a few μm is often required for probing small-scale high-energy-density plasmas using high resolution x-ray imaging spectroscopy. This resolution can be achieved by adjusting system magnification to overcome the inherent limitation of the detector pixel size. Laboratory experiments on investigating the relation between spatial resolution and system magnification for a spherical crystal spectrometer are presented. Tungsten Lβ{sub 2} rays from a tungsten-target micro-focus x-ray tube were diffracted by a Ge 440 crystal, which was spherically bent to a radius of 223 mm, and imaged onto an x-ray CCD with 13-μm pixel size. The source-to-crystal (p)more » and crystal-to-detector (q) distances were varied to produce spatial magnifications (M = q/p) ranging from 2 to 10. The inferred instrumental spatial width reduces with increasing system magnification M. However, the experimental measurement at each M is larger than the theoretical value of pixel size divided by M. Future work will focus on investigating possible broadening mechanisms that limit the spatial resolution.« less

Simulation the spatial resolution of an X-ray imager based on zinc oxide nanowires in anodic aluminium oxide membrane by using MCNP and OPTICS Codes

NASA Astrophysics Data System (ADS)

Samarin, S. N.; Saramad, S.

2018-05-01

The spatial resolution of a detector is a very important parameter for x-ray imaging. A bulk scintillation detector because of spreading of light inside the scintillator does't have a good spatial resolution. The nanowire scintillators because of their wave guiding behavior can prevent the spreading of light and can improve the spatial resolution of traditional scintillation detectors. The zinc oxide (ZnO) scintillator nanowire, with its simple construction by electrochemical deposition in regular hexagonal structure of Aluminum oxide membrane has many advantages. The three dimensional absorption of X-ray energy in ZnO scintillator is simulated by a Monte Carlo transport code (MCNP). The transport, attenuation and scattering of the generated photons are simulated by a general-purpose scintillator light response simulation code (OPTICS). The results are compared with a previous publication which used a simulation code of the passage of particles through matter (Geant4). The results verify that this scintillator nanowire structure has a spatial resolution less than one micrometer.

Effects of spatial resolution and landscape structure on land cover characterization

NASA Astrophysics Data System (ADS)

Yang, Wenli

This dissertation addressed problems in scaling, problems that are among the main challenges in remote sensing. The principal objective of the research was to investigate the effects of changing spatial scale on the representation of land cover. A second objective was to determine the relationship between such effects, characteristics of landscape structure and scaling procedures. Four research issues related to spatial scaling were examined. They included: (1) the upscaling of Normalized Difference Vegetation Index (NDVI); (2) the effects of spatial scale on indices of landscape structure; (3) the representation of land cover databases at different spatial scales; and (4) the relationships between landscape indices and land cover area estimations. The overall bias resulting from non-linearity of NDVI in relation to spatial resolution is generally insignificant as compared to other factors such as influences of aerosols and water vapor. The bias is, however, related to land surface characteristics. Significant errors may be introduced in heterogeneous areas where different land cover types exhibit strong spectral contrast. Spatially upscaled SPOT and TM NDVIs have information content comparable with the AVHRR-derived NDVI. Indices of landscape structure and spatial resolution are generally related, but the exact forms of the relationships are subject to changes in other factors including the basic patch unit constituting a landscape and the proportional area of foreground land cover under consideration. The extent of agreement between spatially aggregated coarse resolution land cover datasets and full resolution datasets changes with the properties of the original datasets, including the pixel size and class definition. There are close relationships between landscape structure and class areas estimated from spatially aggregated land cover databases. The relationships, however, do not permit extension from one area to another. Inversion calibration across different geographic/ecological areas is, therefore, not feasible. Different rules govern the land cover area changes across resolutions when different upscaling methods are used. Special attention should be given to comparison between land cover maps derived using different methods.

A review of potential image fusion methods for remote sensing-based irrigation management: Part II

USDA-ARS?s Scientific Manuscript database

Satellite-based sensors provide data at either greater spectral and coarser spatial resolutions, or lower spectral and finer spatial resolutions due to complementary spectral and spatial characteristics of optical sensor systems. In order to overcome this limitation, image fusion has been suggested ...

Hi-Res scan mode in clinical MDCT systems: Experimental assessment of spatial resolution performance

PubMed Central

Cruz-Bastida, Juan P.; Gomez-Cardona, Daniel; Li, Ke; Sun, Heyi; Hsieh, Jiang; Szczykutowicz, Timothy P.; Chen, Guang-Hong

2016-01-01

Purpose: The introduction of a High-Resolution (Hi-Res) scan mode and another associated option that combines Hi-Res mode with the so-called High Definition (HD) reconstruction kernels (referred to as a Hi-Res/HD mode in this paper) in some multi-detector CT (MDCT) systems offers new opportunities to increase spatial resolution for some clinical applications that demand high spatial resolution. The purpose of this work was to quantify the in-plane spatial resolution along both the radial direction and tangential direction for the Hi-Res and Hi-Res/HD scan modes at different off-center positions. Methods: A technique was introduced and validated to address the signal saturation problem encountered in the attempt to quantify spatial resolution for the Hi-Res and Hi-Res/HD scan modes. Using the proposed method, the modulation transfer functions (MTFs) of a 64-slice MDCT system (Discovery CT750 HD, GE Healthcare) equipped with both Hi-Res and Hi-Res/HD modes were measured using a metal bead at nine different off-centered positions (0–16 cm with a step size of 2 cm); at each position, both conventional scans and Hi-Res scans were performed. For each type of scan and position, 80 repeated acquisitions were performed to reduce noise induced uncertainties in the MTF measurements. A total of 15 reconstruction kernels, including eight conventional kernels and seven HD kernels, were used to reconstruct CT images of the bead. An ex vivo animal study consisting of a bone fracture model was performed to corroborate the MTF results, as the detection of this high-contrast and high frequency task is predominantly determined by spatial resolution. Images of this animal model generated by different scan modes and reconstruction kernels were qualitatively compared with the MTF results. Results: At the centered position, the use of Hi-Res mode resulted in a slight improvement in the MTF; each HD kernel generated higher spatial resolution than its counterpart conventional kernel. However, the MTF along the tangential direction of the scan field of view (SFOV) was significantly degraded at off-centered positions, yet the combined Hi-Res/HD mode reduced this azimuthal MTF degradation. Images of the animal bone fracture model confirmed the improved spatial resolution at the off-centered positions through the use of the Hi-Res mode and HD kernels. Conclusions: The Hi-Res/HD scan improve spatial resolution of MDCT systems at both centered and off-centered positions. PMID:27147351

Hi-Res scan mode in clinical MDCT systems: Experimental assessment of spatial resolution performance.

PubMed

Cruz-Bastida, Juan P; Gomez-Cardona, Daniel; Li, Ke; Sun, Heyi; Hsieh, Jiang; Szczykutowicz, Timothy P; Chen, Guang-Hong

2016-05-01

The introduction of a High-Resolution (Hi-Res) scan mode and another associated option that combines Hi-Res mode with the so-called High Definition (HD) reconstruction kernels (referred to as a Hi-Res/HD mode in this paper) in some multi-detector CT (MDCT) systems offers new opportunities to increase spatial resolution for some clinical applications that demand high spatial resolution. The purpose of this work was to quantify the in-plane spatial resolution along both the radial direction and tangential direction for the Hi-Res and Hi-Res/HD scan modes at different off-center positions. A technique was introduced and validated to address the signal saturation problem encountered in the attempt to quantify spatial resolution for the Hi-Res and Hi-Res/HD scan modes. Using the proposed method, the modulation transfer functions (MTFs) of a 64-slice MDCT system (Discovery CT750 HD, GE Healthcare) equipped with both Hi-Res and Hi-Res/HD modes were measured using a metal bead at nine different off-centered positions (0-16 cm with a step size of 2 cm); at each position, both conventional scans and Hi-Res scans were performed. For each type of scan and position, 80 repeated acquisitions were performed to reduce noise induced uncertainties in the MTF measurements. A total of 15 reconstruction kernels, including eight conventional kernels and seven HD kernels, were used to reconstruct CT images of the bead. An ex vivo animal study consisting of a bone fracture model was performed to corroborate the MTF results, as the detection of this high-contrast and high frequency task is predominantly determined by spatial resolution. Images of this animal model generated by different scan modes and reconstruction kernels were qualitatively compared with the MTF results. At the centered position, the use of Hi-Res mode resulted in a slight improvement in the MTF; each HD kernel generated higher spatial resolution than its counterpart conventional kernel. However, the MTF along the tangential direction of the scan field of view (SFOV) was significantly degraded at off-centered positions, yet the combined Hi-Res/HD mode reduced this azimuthal MTF degradation. Images of the animal bone fracture model confirmed the improved spatial resolution at the off-centered positions through the use of the Hi-Res mode and HD kernels. The Hi-Res/HD scan improve spatial resolution of MDCT systems at both centered and off-centered positions.

Honey improves spermatogenesis and hormone secretion in testicular ischaemia-reperfusion-induced injury in rats.

PubMed

Gholami, M; Abbaszadeh, A; Khanipour Khayat, Z; Anbari, K; Baharvand, P; Gharravi, A M

2018-02-01

This study was conducted to survey the protective effect of pre-treatment with Persian honey during post-ischaemia reperfusion on ischaemia-reperfusion (IR)-induced testis injury. Animals were divided into four groups of IR, honey + ischaemia- reperfusion (HIR), vitamin C + ischaemia- reperfusion (VIR) and carbohydrates + ischaemia- reperfusion (CIR). The testes were examined for spermatogenesis index. Detection of single- and double-stranded DNA breaks at the early stages of apoptosis was performed. Total serum concentration of FSH, LH and testosterone was measured using ELISA. All data were expressed as mean ± SD in each group, and significance was set at p ≤ .05. Spermatogenesis index was significant in the HIR group (p < .001). Serum levels of FSH and LH were significantly higher in the CIR and HIR groups. Serum levels of testosterone were significantly higher in VIR and HIR groups. Apoptotic cells in IR and CIR groups increased significantly statistically (p < .001), while in HIR and VIR groups, the number of apoptotic cells decreased and the positive cells of TUNEL staining were detected in spermatocytes and spermatid. The present study indicates that honey decreases the cellular damage and apoptosis during testicular I/R injury, with significant protective effects on reproductive hormone production. © 2017 Blackwell Verlag GmbH.

Monte Carlo-based assessment of the trade-off between spatial resolution, field-of-view and scattered radiation in the variable resolution X-ray CT scanner.

PubMed

Arabi, Hossein; Kamali Asl, Ali Reza; Ay, Mohammad Reza; Zaidi, Habib

2015-07-01

The purpose of this work is to evaluate the impact of optimization of magnification on performance parameters of the variable resolution X-ray (VRX) CT scanner. A realistic model based on an actual VRX CT scanner was implemented in the GATE Monte Carlo simulation platform. To evaluate the influence of system magnification, spatial resolution, field-of-view (FOV) and scatter-to-primary ratio of the scanner were estimated for both fixed and optimum object magnification at each detector rotation angle. Comparison and inference between these performance parameters were performed angle by angle to determine appropriate object position at each opening half angle. Optimization of magnification resulted in a trade-off between spatial resolution and FOV of the scanner at opening half angles of 90°-12°, where the spatial resolution increased up to 50% and the scatter-to-primary ratio decreased from 4.8% to 3.8% at a detector angle of about 90° for the same FOV and X-ray energy spectrum. The disadvantage of magnification optimization at these angles is the significant reduction of the FOV (up to 50%). Moreover, magnification optimization was definitely beneficial for opening half angles below 12° improving the spatial resolution from 7.5 cy/mm to 20 cy/mm. Meanwhile, the FOV increased by more than 50% at these angles. It can be concluded that optimization of magnification is essential for opening half angles below 12°. For opening half angles between 90° and 12°, the VRX CT scanner magnification should be set according to the desired spatial resolution and FOV. Copyright © 2015 Associazione Italiana di Fisica Medica. Published by Elsevier Ltd. All rights reserved.

The Effect of Rainfall Measurement Technique and Its Spatiotemporal Resolution on Discharge Predictions in the Netherlands

NASA Astrophysics Data System (ADS)

Uijlenhoet, R.; Brauer, C.; Overeem, A.; Sassi, M.; Rios Gaona, M. F.

2014-12-01

Several rainfall measurement techniques are available for hydrological applications, each with its own spatial and temporal resolution. We investigated the effect of these spatiotemporal resolutions on discharge simulations in lowland catchments by forcing a novel rainfall-runoff model (WALRUS) with rainfall data from gauges, radars and microwave links. The hydrological model used for this analysis is the recently developed Wageningen Lowland Runoff Simulator (WALRUS). WALRUS is a rainfall-runoff model accounting for hydrological processes relevant to areas with shallow groundwater (e.g. groundwater-surface water feedback). Here, we used WALRUS for case studies in a freely draining lowland catchment and a polder with controlled water levels. We used rain gauge networks with automatic (hourly resolution but low spatial density) and manual gauges (high spatial density but daily resolution). Operational (real-time) and climatological (gauge-adjusted) C-band radar products and country-wide rainfall maps derived from microwave link data from a cellular telecommunication network were also used. Discharges simulated with these different inputs were compared to observations. We also investigated the effect of spatiotemporal resolution with a high-resolution X-band radar data set for catchments with different sizes. Uncertainty in rainfall forcing is a major source of uncertainty in discharge predictions, both with lumped and with distributed models. For lumped rainfall-runoff models, the main source of input uncertainty is associated with the way in which (effective) catchment-average rainfall is estimated. When catchments are divided into sub-catchments, rainfall spatial variability can become more important, especially during convective rainfall events, leading to spatially varying catchment wetness and spatially varying contribution of quick flow routes. Improving rainfall measurements and their spatiotemporal resolution can improve the performance of rainfall-runoff models, indicating their potential for reducing flood damage through real-time control.

Improvement of range spatial resolution of medical ultrasound imaging by element-domain signal processing

NASA Astrophysics Data System (ADS)

Hasegawa, Hideyuki

2017-07-01

The range spatial resolution is an important factor determining the image quality in ultrasonic imaging. The range spatial resolution in ultrasonic imaging depends on the ultrasonic pulse length, which is determined by the mechanical response of the piezoelectric element in an ultrasonic probe. To improve the range spatial resolution without replacing the transducer element, in the present study, methods based on maximum likelihood (ML) estimation and multiple signal classification (MUSIC) were proposed. The proposed methods were applied to echo signals received by individual transducer elements in an ultrasonic probe. The basic experimental results showed that the axial half maximum of the echo from a string phantom was improved from 0.21 mm (conventional method) to 0.086 mm (ML) and 0.094 mm (MUSIC).

The Next Generation Fornax Survey (NGFS). III. Revealing the Spatial Substructure of the Dwarf Galaxy Population Inside Half of Fornax's Virial Radius

NASA Astrophysics Data System (ADS)

Ordenes-Briceño, Yasna; Eigenthaler, Paul; Taylor, Matthew A.; Puzia, Thomas H.; Alamo-Martínez, Karla; Ribbeck, Karen X.; Muñoz, Roberto P.; Zhang, Hongxin; Grebel, Eva K.; Ángel, Simón; Côté, Patrick; Ferrarese, Laura; Hilker, Michael; Lançon, Ariane; Mieske, Steffen; Miller, Bryan W.; Rong, Yu; Sánchez-Janssen, Ruben

2018-05-01

We report the discovery of 271 previously undetected dwarf galaxies in the outer Fornax cluster regions at radii r vir/4 < r < r vir/2 using data from the Next Generation Fornax Survey (NGFS) with deep coadded u‧, g‧, and i‧ images obtained with Blanco/DECam at Cerro Tololo Interamerican Observatory. From the 271 dwarf candidates, we find 39 to be nucleated. Together with our previous study of the central Fornax region, the new dwarfs detected with NGFS data number 392, of which 56 are nucleated. The total Fornax dwarf galaxy population from NGFS and other catalogs rises, therefore, to a total of 643 with 181 being nucleated, yielding an overall nucleation fraction of 28%. The absolute i‧-band magnitudes for the outer NGFS dwarfs are in the range ‑18.80 ≤ M i‧ ≤ ‑8.78 with effective radii r eff,i‧ = 0.18–2.22 kpc and an average Sérsic index < n{> }i\\prime =0.81. Nonnucleated dwarfs are found to be fainter and smaller by {{Δ }}< {M}i\\prime > =2.25 mag and {{Δ }}< {r}eff,i\\prime }> =0.4 {kpc} than the nucleated dwarfs. We demonstrate a significant clustering of dwarf galaxies on scales ≲100 kpc, and projected surface number density profile estimates, Σ N (r), show a concentration of dwarfs in the Fornax core region within r ≲ 350 kpc. Σ N (r) has a flat distribution up to ∼350 kpc, beyond which it declines for the nonnucleated dwarfs. The nucleated dwarfs have a steeper Σ N (r) distribution, are more concentrated toward NGC 1399, and are decreasing rapidly outwards. This is the first time the transition from cluster to field environment has been established for the very faint dwarf galaxy population with robust sample statistics.

Investigation of spatial resolution and temporal performance of SAPHIRE (scintillator avalanche photoconductor with high resolution emitter readout) with integrated electrostatic focusing

NASA Astrophysics Data System (ADS)

Scaduto, David A.; Lubinsky, Anthony R.; Rowlands, John A.; Kenmotsu, Hidenori; Nishimoto, Norihito; Nishino, Takeshi; Tanioka, Kenkichi; Zhao, Wei

2014-03-01

We have previously proposed SAPHIRE (scintillator avalanche photoconductor with high resolution emitter readout), a novel detector concept with potentially superior spatial resolution and low-dose performance compared with existing flat-panel imagers. The detector comprises a scintillator that is optically coupled to an amorphous selenium photoconductor operated with avalanche gain, known as high-gain avalanche rushing photoconductor (HARP). High resolution electron beam readout is achieved using a field emitter array (FEA). This combination of avalanche gain, allowing for very low-dose imaging, and electron emitter readout, providing high spatial resolution, offers potentially superior image quality compared with existing flat-panel imagers, with specific applications to fluoroscopy and breast imaging. Through the present collaboration, a prototype HARP sensor with integrated electrostatic focusing and nano- Spindt FEA readout technology has been fabricated. The integrated electron-optic focusing approach is more suitable for fabricating large-area detectors. We investigate the dependence of spatial resolution on sensor structure and operating conditions, and compare the performance of electrostatic focusing with previous technologies. Our results show a clear dependence of spatial resolution on electrostatic focusing potential, with performance approaching that of the previous design with external mesh-electrode. Further, temporal performance (lag) of the detector is evaluated and the results show that the integrated electrostatic focusing design exhibits comparable or better performance compared with the mesh-electrode design. This study represents the first technical evaluation and characterization of the SAPHIRE concept with integrated electrostatic focusing.

Spatial variability of the Black Sea surface temperature from high resolution modeling and satellite measurements

NASA Astrophysics Data System (ADS)

Mizyuk, Artem; Senderov, Maxim; Korotaev, Gennady

2016-04-01

Large number of numerical ocean models were implemented for the Black Sea basin during last two decades. They reproduce rather similar structure of synoptical variability of the circulation. Since 00-s numerical studies of the mesoscale structure are carried out using high performance computing (HPC). With the growing capacity of computing resources it is now possible to reconstruct the Black Sea currents with spatial resolution of several hundreds meters. However, how realistic these results can be? In the proposed study an attempt is made to understand which spatial scales are reproduced by ocean model in the Black Sea. Simulations are made using parallel version of NEMO (Nucleus for European Modelling of the Ocean). A two regional configurations with spatial resolutions 5 km and 2.5 km are described. Comparison of the SST from simulations with two spatial resolutions shows rather qualitative difference of the spatial structures. Results of high resolution simulation are compared also with satellite observations and observation-based products from Copernicus using spatial correlation and spectral analysis. Spatial scales of correlations functions for simulated and observed SST are rather close and differs much from satellite SST reanalysis. Evolution of spectral density for modelled SST and reanalysis showed agreed time periods of small scales intensification. Using of the spectral analysis for satellite measurements is complicated due to gaps. The research leading to this results has received funding from Russian Science Foundation (project № 15-17-20020)

Using High Spatial Resolution to Improve BOLD fMRI Detection at 3T

PubMed Central

Claise, Béatrice; Jean, Betty

2015-01-01

For different functional magnetic resonance imaging experiments using blood oxygenation level-dependent (BOLD) contrast, the acquisition of T 2*-weighted scans at a high spatial resolution may be advantageous in terms of time-course signal-to-noise ratio and of BOLD sensitivity when the regions are prone to susceptibility artifacts. In this study, we explore this solution by examining how spatial resolution influences activations elicited when appetizing food pictures are viewed. Twenty subjects were imaged at 3 T with two different voxel volumes, 3.4 μl and 27 μl. Despite the diminution of brain coverage, we found that high-resolution acquisition led to a better detection of activations. Though known to suffer to different degrees from susceptibility artifacts, the activations detected by high spatial resolution were notably consistent with those reported in published activation likelihood estimation meta-analyses, corresponding to taste-responsive regions. Furthermore, these regions were found activated bilaterally, in contrast with previous findings. Both the reduction of partial volume effect, which improves BOLD contrast, and the mitigation of susceptibility artifact, which boosts the signal to noise ratio in certain regions, explained the better detection noted with high resolution. The present study provides further evidences that high spatial resolution is a valuable solution for human BOLD fMRI, especially for studying food-related stimuli. PMID:26550990

Variability of 4D flow parameters when subjected to changes in MRI acquisition parameters using a realistic thoracic aortic phantom.

PubMed

Montalba, Cristian; Urbina, Jesus; Sotelo, Julio; Andia, Marcelo E; Tejos, Cristian; Irarrazaval, Pablo; Hurtado, Daniel E; Valverde, Israel; Uribe, Sergio

2018-04-01

To assess the variability of peak flow, mean velocity, stroke volume, and wall shear stress measurements derived from 3D cine phase contrast (4D flow) sequences under different conditions of spatial and temporal resolutions. We performed controlled experiments using a thoracic aortic phantom. The phantom was connected to a pulsatile flow pump, which simulated nine physiological conditions. For each condition, 4D flow data were acquired with different spatial and temporal resolutions. The 2D cine phase contrast and 4D flow data with the highest available spatio-temporal resolution were considered as a reference for comparison purposes. When comparing 4D flow acquisitions (spatial and temporal resolution of 2.0 × 2.0 × 2.0 mm 3 and 40 ms, respectively) with 2D phase-contrast flow acquisitions, the underestimation of peak flow, mean velocity, and stroke volume were 10.5, 10 and 5%, respectively. However, the calculated wall shear stress showed an underestimation larger than 70% for the former acquisition, with respect to 4D flow, with spatial and temporal resolution of 1.0 × 1.0 × 1.0 mm 3 and 20 ms, respectively. Peak flow, mean velocity, and stroke volume from 4D flow data are more sensitive to changes of temporal than spatial resolution, as opposed to wall shear stress, which is more sensitive to changes in spatial resolution. Magn Reson Med 79:1882-1892, 2018. © 2017 International Society for Magnetic Resonance in Medicine. © 2017 International Society for Magnetic Resonance in Medicine.

Results on the spatial resolution of repetitive transcranial magnetic stimulation for cortical language mapping during object naming in healthy subjects.

PubMed

Sollmann, Nico; Hauck, Theresa; Tussis, Lorena; Ille, Sebastian; Maurer, Stefanie; Boeckh-Behrens, Tobias; Ringel, Florian; Meyer, Bernhard; Krieg, Sandro M

2016-10-24

The spatial resolution of repetitive navigated transcranial magnetic stimulation (rTMS) for language mapping is largely unknown. Thus, to determine a minimum spatial resolution of rTMS for language mapping, we evaluated the mapping sessions derived from 19 healthy volunteers for cortical hotspots of no-response errors. Then, the distances between hotspots (stimulation points with a high error rate) and adjacent mapping points (stimulation points with low error rates) were evaluated. Mean distance values of 13.8 ± 6.4 mm (from hotspots to ventral points, range 0.7-30.7 mm), 10.8 ± 4.8 mm (from hotspots to dorsal points, range 2.0-26.5 mm), 16.6 ± 4.8 mm (from hotspots to apical points, range 0.9-27.5 mm), and 13.8 ± 4.3 mm (from hotspots to caudal points, range 2.0-24.2 mm) were measured. According to the results, the minimum spatial resolution of rTMS should principally allow for the identification of a particular gyrus, and according to the literature, it is in good accordance with the spatial resolution of direct cortical stimulation (DCS). Since measurement was performed between hotspots and adjacent mapping points and not on a finer-grained basis, we only refer to a minimum spatial resolution. Furthermore, refinement of our results within the scope of a prospective study combining rTMS and DCS for resolution measurement during language mapping should be the next step.

The validity of flow approximations when simulating catchment-integrated flash floods

NASA Astrophysics Data System (ADS)

Bout, B.; Jetten, V. G.

2018-01-01

Within hydrological models, flow approximations are commonly used to reduce computation time. The validity of these approximations is strongly determined by flow height, flow velocity and the spatial resolution of the model. In this presentation, the validity and performance of the kinematic, diffusive and dynamic flow approximations are investigated for use in a catchment-based flood model. Particularly, the validity during flood events and for varying spatial resolutions is investigated. The OpenLISEM hydrological model is extended to implement both these flow approximations and channel flooding based on dynamic flow. The flow approximations are used to recreate measured discharge in three catchments, among which is the hydrograph of the 2003 flood event in the Fella river basin. Furthermore, spatial resolutions are varied for the flood simulation in order to investigate the influence of spatial resolution on these flow approximations. Results show that the kinematic, diffusive and dynamic flow approximation provide least to highest accuracy, respectively, in recreating measured discharge. Kinematic flow, which is commonly used in hydrological modelling, substantially over-estimates hydrological connectivity in the simulations with a spatial resolution of below 30 m. Since spatial resolutions of models have strongly increased over the past decades, usage of routed kinematic flow should be reconsidered. The combination of diffusive or dynamic overland flow and dynamic channel flooding provides high accuracy in recreating the 2003 Fella river flood event. Finally, in the case of flood events, spatial modelling of kinematic flow substantially over-estimates hydrological connectivity and flow concentration since pressure forces are removed, leading to significant errors.

Towards a microchannel-based X-ray detector with two-dimensional spatial and time resolution and high dynamic range

DOE Office of Scientific and Technical Information (OSTI.GOV)

Adams, Bernhard W.; Mane, Anil U.; Elam, Jeffrey W.

X-ray detectors that combine two-dimensional spatial resolution with a high time resolution are needed in numerous applications of synchrotron radiation. Most detectors with this combination of capabilities are based on semiconductor technology and are therefore limited in size. Furthermore, the time resolution is often realised through rapid time-gating of the acquisition, followed by a slower readout. Here, a detector technology is realised based on relatively inexpensive microchannel plates that uses GHz waveform sampling for a millimeter-scale spatial resolution and better than 100 ps time resolution. The technology is capable of continuous streaming of time- and location-tagged events at rates greatermore » than 10 7events per cm 2. Time-gating can be used for improved dynamic range.« less

Combined multi-plane phase retrieval and super-resolution optical fluctuation imaging for 4D cell microscopy

NASA Astrophysics Data System (ADS)

Descloux, A.; Grußmayer, K. S.; Bostan, E.; Lukes, T.; Bouwens, A.; Sharipov, A.; Geissbuehler, S.; Mahul-Mellier, A.-L.; Lashuel, H. A.; Leutenegger, M.; Lasser, T.

2018-03-01

Super-resolution fluorescence microscopy provides unprecedented insight into cellular and subcellular structures. However, going `beyond the diffraction barrier' comes at a price, since most far-field super-resolution imaging techniques trade temporal for spatial super-resolution. We propose the combination of a novel label-free white light quantitative phase imaging with fluorescence to provide high-speed imaging and spatial super-resolution. The non-iterative phase retrieval relies on the acquisition of single images at each z-location and thus enables straightforward 3D phase imaging using a classical microscope. We realized multi-plane imaging using a customized prism for the simultaneous acquisition of eight planes. This allowed us to not only image live cells in 3D at up to 200 Hz, but also to integrate fluorescence super-resolution optical fluctuation imaging within the same optical instrument. The 4D microscope platform unifies the sensitivity and high temporal resolution of phase imaging with the specificity and high spatial resolution of fluorescence microscopy.

Lensfree on-chip microscopy over a wide field-of-view using pixel super-resolution

PubMed Central

Bishara, Waheb; Su, Ting-Wei; Coskun, Ahmet F.; Ozcan, Aydogan

2010-01-01

We demonstrate lensfree holographic microscopy on a chip to achieve ~0.6 µm spatial resolution corresponding to a numerical aperture of ~0.5 over a large field-of-view of ~24 mm2. By using partially coherent illumination from a large aperture (~50 µm), we acquire lower resolution lensfree in-line holograms of the objects with unit fringe magnification. For each lensfree hologram, the pixel size at the sensor chip limits the spatial resolution of the reconstructed image. To circumvent this limitation, we implement a sub-pixel shifting based super-resolution algorithm to effectively recover much higher resolution digital holograms of the objects, permitting sub-micron spatial resolution to be achieved across the entire sensor chip active area, which is also equivalent to the imaging field-of-view (24 mm2) due to unit magnification. We demonstrate the success of this pixel super-resolution approach by imaging patterned transparent substrates, blood smear samples, as well as Caenoharbditis Elegans. PMID:20588977

Dawn Maps the Surface Composition of Vesta

NASA Technical Reports Server (NTRS)

Prettyman, T.; Palmer, E.; Reedy, R.; Sykes, M.; Yingst, R.; McSween, H.; DeSanctis, M. C.; Capaccinoni, F.; Capria, M. T.; Filacchione, G.;

Pushing the limits of spatial resolution with the Kuiper Airborne observatory

NASA Technical Reports Server (NTRS)

Lester, Daniel

1994-01-01

The study of astronomical objects at high spatial resolution in the far-IR is one of the most serious limitations to our work at these wavelengths, which carry information about the luminosity of dusty and obscured sources. At IR wavelengths shorter than 30 microns, ground based telescopes with large apertures at superb sites achieve diffraction-limited performance close to the seeing limit in the optical. At millimeter wavelengths, ground based interferometers achieve resolution that is close to this. The inaccessibility of the far-IR from the ground makes it difficult, however, to achieve complementary resolution in the far-IR. The 1983 IRAS survey, while extraordinarily sensitive, provides us with a sky map at a spatial resolution that is limited by detector size on a spatial scale that is far larger than that available in other wavelengths on the ground. The survey resolution is of order 4 min in the 100 micron bandpass, and 2 min at 60 microns (IRAS Explanatory Supplement, 1988). Information on a scale of 1' is available on some sources from the CPC. Deconvolution and image resolution using this database is one of the subjects of this workshop.

Urban-scale mapping of PM2.5 distribution via data fusion between high-density sensor network and MODIS Aerosol Optical Depth

NASA Astrophysics Data System (ADS)

Ba, Yu Tao; xian Liu, Bao; Sun, Feng; Wang, Li hua; Tang, Yu jia; Zhang, Da wei

2017-04-01

High-resolution mapping of PM2.5 is the prerequisite for precise analytics and subsequent anti-pollution interventions. Considering the large variances of particulate distribution, urban-scale mapping is challenging either with ground-based fixed stations, with satellites or via models. In this study, a dynamic fusion method between high-density sensor network and MODIS Aerosol Optical Depth (AOD) was introduced. The sensor network was deployed in Beijing ( > 1000 fixed monitors across 16000 km2 area) to provide raw observations with high temporal resolution (sampling interval < 1 hour), high spatial resolution in flat areas ( < 1 km), and low spatial resolution in mountainous areas ( > 5 km). The MODIS AOD was calibrated to provide distribution map with low temporal resolution (daily) and moderate spatial resolution ( = 3 km). By encoding the data quality and defects (e.g. could, reflectance, abnormal), a hybrid interpolation procedure with cross-validation generated PM2.5 distribution with both high temporal and spatial resolution. Several no-pollutant and high-pollution periods were tested to validate the proposed fusion method for capturing the instantaneous patterns of PM2.5 emission.

Selective spatial enhancement: Attentional spotlight size impacts spatial but not temporal perception.

PubMed

Goodhew, Stephanie C; Shen, Elizabeth; Edwards, Mark

2016-08-01

An important but often neglected aspect of attention is how changes in the attentional spotlight size impact perception. The zoom-lens model predicts that a small ("focal") attentional spotlight enhances all aspects of perception relative to a larger ("diffuse" spotlight). However, based on the physiological properties of the two major classes of visual cells (magnocellular and parvocellular neurons) we predicted trade-offs in spatial and temporal acuity as a function of spotlight size. Contrary to both of these accounts, however, across two experiments we found that attentional spotlight size affected spatial acuity, such that spatial acuity was enhanced for a focal relative to a diffuse spotlight, whereas the same modulations in spotlight size had no impact on temporal acuity. This likely reflects the function of attention: to induce the high spatial resolution of the fovea in periphery, where spatial resolution is poor but temporal resolution is good. It is adaptive, therefore, for the attentional spotlight to enhance spatial acuity, whereas enhancing temporal acuity does not confer the same benefit.

Attentional enhancement of spatial resolution: linking behavioural and neurophysiological evidence

PubMed Central

Anton-Erxleben, Katharina; Carrasco, Marisa

2014-01-01

Attention allows us to select relevant sensory information for preferential processing. Behaviourally, it improves performance in various visual tasks. One prominent effect of attention is the modulation of performance in tasks that involve the visual system’s spatial resolution. Physiologically, attention modulates neuronal responses and alters the profile and position of receptive fields near the attended location. Here, we develop a hypothesis linking the behavioural and electrophysiological evidence. The proposed framework seeks to explain how these receptive field changes enhance the visual system’s effective spatial resolution and how the same mechanisms may also underlie attentional effects on the representation of spatial information. PMID:23422910

Downscaling soil moisture over regions that include multiple coarse-resolution grid cells

USDA-ARS?s Scientific Manuscript database

Many applications require soil moisture estimates over large spatial extents (30-300 km) and at fine-resolutions (10-30 m). Remote-sensing methods can provide soil moisture estimates over very large spatial extents (continental to global) at coarse resolutions (10-40 km), but their output must be d...

Urban cover mapping using digital, high-resolution aerial imagery

Treesearch

Soojeong Myeong; David J. Nowak; Paul F. Hopkins; Robert H. Brock

2003-01-01

High-spatial resolution digital color-infrared aerial imagery of Syracuse, NY was analyzed to test methods for developing land cover classifications for an urban area. Five cover types were mapped: tree/shrub, grass/herbaceous, bare soil, water and impervious surface. Challenges in high-spatial resolution imagery such as shadow effect and similarity in spectral...

TerraClimate, a high-resolution global dataset of monthly climate and climatic water balance from 1958-2015.

PubMed

Abatzoglou, John T; Dobrowski, Solomon Z; Parks, Sean A; Hegewisch, Katherine C

2018-01-09

We present TerraClimate, a dataset of high-spatial resolution (1/24°, ~4-km) monthly climate and climatic water balance for global terrestrial surfaces from 1958-2015. TerraClimate uses climatically aided interpolation, combining high-spatial resolution climatological normals from the WorldClim dataset, with coarser resolution time varying (i.e., monthly) data from other sources to produce a monthly dataset of precipitation, maximum and minimum temperature, wind speed, vapor pressure, and solar radiation. TerraClimate additionally produces monthly surface water balance datasets using a water balance model that incorporates reference evapotranspiration, precipitation, temperature, and interpolated plant extractable soil water capacity. These data provide important inputs for ecological and hydrological studies at global scales that require high spatial resolution and time varying climate and climatic water balance data. We validated spatiotemporal aspects of TerraClimate using annual temperature, precipitation, and calculated reference evapotranspiration from station data, as well as annual runoff from streamflow gauges. TerraClimate datasets showed noted improvement in overall mean absolute error and increased spatial realism relative to coarser resolution gridded datasets.

TerraClimate, a high-resolution global dataset of monthly climate and climatic water balance from 1958-2015

NASA Astrophysics Data System (ADS)

Abatzoglou, John T.; Dobrowski, Solomon Z.; Parks, Sean A.; Hegewisch, Katherine C.

2018-01-01

We present TerraClimate, a dataset of high-spatial resolution (1/24°, ~4-km) monthly climate and climatic water balance for global terrestrial surfaces from 1958-2015. TerraClimate uses climatically aided interpolation, combining high-spatial resolution climatological normals from the WorldClim dataset, with coarser resolution time varying (i.e., monthly) data from other sources to produce a monthly dataset of precipitation, maximum and minimum temperature, wind speed, vapor pressure, and solar radiation. TerraClimate additionally produces monthly surface water balance datasets using a water balance model that incorporates reference evapotranspiration, precipitation, temperature, and interpolated plant extractable soil water capacity. These data provide important inputs for ecological and hydrological studies at global scales that require high spatial resolution and time varying climate and climatic water balance data. We validated spatiotemporal aspects of TerraClimate using annual temperature, precipitation, and calculated reference evapotranspiration from station data, as well as annual runoff from streamflow gauges. TerraClimate datasets showed noted improvement in overall mean absolute error and increased spatial realism relative to coarser resolution gridded datasets.

Development of Finer Spatial Resolution Optical Properties from MODIS

DTIC Science & Technology

2008-02-04

infrared (SWIR) channels at 1240 nm and 2130 run. The increased resolution spectral Rrs channels are input into bio-optical algorithms (Quasi...processes. Additionally, increased resolution is required for validation of ocean color products in coastal regions due to the shorter spatial scales of...with in situ Rrs data to determine the "best" method in coastal regimes. We demonstrate that finer resolution is required for validation of coastal

Data Descriptor: TerraClimate, a high-resolution global dataset of monthly climate and climatic water balance from 1958-2015

Treesearch

John T. Abatzoglou; Solomon Z. Dobrowski; Sean A. Parks; Katherine C. Hegewisch

2018-01-01

We present TerraClimate, a dataset of high-spatial resolution (1/24°, ~4-km) monthly climate and climatic water balance for global terrestrial surfaces from 1958–2015. TerraClimate uses climatically aided interpolation, combining high-spatial resolution climatological normals from the WorldClim dataset, with coarser resolution time varying (i.e., monthly) data from...

Magnetoacoustic Imaging of Electrical Conductivity of Biological Tissues at a Spatial Resolution Better than 2 mm

PubMed Central

Hu, Gang; He, Bin

2011-01-01

Magnetoacoustic tomography with magnetic induction (MAT-MI) is an emerging approach for noninvasively imaging electrical impedance properties of biological tissues. The MAT-MI imaging system measures ultrasound waves generated by the Lorentz force, having been induced by magnetic stimulation, which is related to the electrical conductivity distribution in tissue samples. MAT-MI promises to provide fine spatial resolution for biological tissue imaging as compared to ultrasound resolution. In the present study, we first estimated the imaging spatial resolution by calculating the full width at half maximum (FWHM) of the system point spread function (PSF). The actual spatial resolution of our MAT-MI system was experimentally determined to be 1.51 mm by a parallel-line-source phantom with Rayleigh criterion. Reconstructed images made from tissue-mimicking gel phantoms, as well as animal tissue samples, were consistent with the morphological structures of the samples. The electrical conductivity value of the samples was determined directly by a calibrated four-electrode system. It has been demonstrated that MAT-MI is able to image the electrical impedance properties of biological tissues with better than 2 mm spatial resolution. These results suggest the potential of MAT-MI for application to early detection of small-size diseased tissues (e.g. small breast cancer). PMID:21858111

Sub-pixel mapping of hyperspectral imagery using super-resolution

NASA Astrophysics Data System (ADS)

Sharma, Shreya; Sharma, Shakti; Buddhiraju, Krishna M.

2016-04-01

With the development of remote sensing technologies, it has become possible to obtain an overview of landscape elements which helps in studying the changes on earth's surface due to climate, geological, geomorphological and human activities. Remote sensing measures the electromagnetic radiations from the earth's surface and match the spectral similarity between the observed signature and the known standard signatures of the various targets. However, problem lies when image classification techniques assume pixels to be pure. In hyperspectral imagery, images have high spectral resolution but poor spatial resolution. Therefore, the spectra obtained is often contaminated due to the presence of mixed pixels and causes misclassification. To utilise this high spectral information, spatial resolution has to be enhanced. Many factors make the spatial resolution one of the most expensive and hardest to improve in imaging systems. To solve this problem, post-processing of hyperspectral images is done to retrieve more information from the already acquired images. The algorithm to enhance spatial resolution of the images by dividing them into sub-pixels is known as super-resolution and several researches have been done in this domain.In this paper, we propose a new method for super-resolution based on ant colony optimization and review the popular methods of sub-pixel mapping of hyperspectral images along with their comparative analysis.

Overlapping MALDI-Mass Spectrometry Imaging for In-Parallel MS and MS/MS Data Acquisition without Sacrificing Spatial Resolution

NASA Astrophysics Data System (ADS)

Hansen, Rebecca L.; Lee, Young Jin

2017-09-01

Metabolomics experiments require chemical identifications, often through MS/MS analysis. In mass spectrometry imaging (MSI), this necessitates running several serial tissue sections or using a multiplex data acquisition method. We have previously developed a multiplex MSI method to obtain MS and MS/MS data in a single experiment to acquire more chemical information in less data acquisition time. In this method, each raster step is composed of several spiral steps and each spiral step is used for a separate scan event (e.g., MS or MS/MS). One main limitation of this method is the loss of spatial resolution as the number of spiral steps increases, limiting its applicability for high-spatial resolution MSI. In this work, we demonstrate multiplex MS imaging is possible without sacrificing spatial resolution by the use of overlapping spiral steps, instead of spatially separated spiral steps as used in the previous work. Significant amounts of matrix and analytes are still left after multiple spectral acquisitions, especially with nanoparticle matrices, so that high quality MS and MS/MS data can be obtained on virtually the same tissue spot. This method was then applied to visualize metabolites and acquire their MS/MS spectra in maize leaf cross-sections at 10 μm spatial resolution. [Figure not available: see fulltext.

Improving urban land use and land cover classification from high-spatial-resolution hyperspectral imagery using contextual information

USDA-ARS?s Scientific Manuscript database

In this paper, we propose approaches to improve the pixel-based support vector machine (SVM) classification for urban land use and land cover (LULC) mapping from airborne hyperspectral imagery with high spatial resolution. Class spatial neighborhood relationship is used to correct the misclassified ...

VizieR Online Data Catalog: 22-GHz water maser clouds (Richards+, 2012)

NASA Astrophysics Data System (ADS)

Richards, A. M. S.; Etoka, S.; Gray, M. D.; Lekht, E. E.; Mendoza-Torres, J. E.; Murakawa, K.; Rudnitskij, G.; Yates, J. A.

2012-07-01

Measurements of 22-GHz water maser clouds, made with the MERLIN radio interferometer. Obects presented (number of epochs): S Per (2); U Ori (4); U Her (3); IK Tau (3); RT Vir (7); W Hya (4). Results for VX Sgr were presented in Murakawa et al, 2003, Cat. J/MNRAS/344/1. The position and other properties of each patch of maser emission in each channel were measured by fitting 2D Gaussian components. The components form features corresponding to spatially distinct clouds and the properties of each cloud was calculated as described in the paper. For each cloud, we give the mean Vlsr, the total velocity extent DV, the full width half maximum DV1/2, the offsets of the cloud centroid from the assumed stellar position x, y and a (=sqrt(x2+y2), the feature largest angular size l and the peak flux density I. All velocities, angular distances and flux densities are in km/s, mas and Jy, respectively. (2 data files).

Nature, formation, and distribution of carbonates on Ceres.

PubMed

Carrozzo, Filippo Giacomo; De Sanctis, Maria Cristina; Raponi, Andrea; Ammannito, Eleonora; Castillo-Rogez, Julie; Ehlmann, Bethany L; Marchi, Simone; Stein, Nathaniel; Ciarniello, Mauro; Tosi, Federico; Capaccioni, Fabrizio; Capria, Maria Teresa; Fonte, Sergio; Formisano, Michelangelo; Frigeri, Alessandro; Giardino, Marco; Longobardo, Andrea; Magni, Gianfranco; Palomba, Ernesto; Zambon, Francesca; Raymond, Carol A; Russell, Christopher T

2018-03-01

Different carbonates have been detected on Ceres, and their abundance and spatial distribution have been mapped using a visible and infrared mapping spectrometer (VIR), the Dawn imaging spectrometer. Carbonates are abundant and ubiquitous across the surface, but variations in the strength and position of infrared spectral absorptions indicate variations in the composition and amount of these minerals. Mg-Ca carbonates are detected all over the surface, but localized areas show Na carbonates, such as natrite (Na 2 CO 3 ) and hydrated Na carbonates (for example, Na 2 CO 3 ·H 2 O). Their geological settings and accessory NH 4 -bearing phases suggest the upwelling, excavation, and exposure of salts formed from Na-CO 3 -NH 4 -Cl brine solutions at multiple locations across the planet. The presence of the hydrated carbonates indicates that their formation/exposure on Ceres' surface is geologically recent and dehydration to the anhydrous form (Na 2 CO 3 ) is ongoing, implying a still-evolving body.

Using Ground-Based Measurements and Retrievals to Validate Satellite Data

NASA Technical Reports Server (NTRS)

Dong, Xiquan

2002-01-01

The proposed research is to use the DOE ARM ground-based measurements and retrievals as the ground-truth references for validating satellite cloud results and retrieving algorithms. This validation effort includes four different ways: (1) cloud properties on different satellites, therefore different sensors, TRMM VIRS and TERRA MODIS; (2) cloud properties at different climatic regions, such as DOE ARM SGP, NSA, and TWP sites; (3) different cloud types, low and high level cloud properties; and (4) day and night retrieving algorithms. Validation of satellite-retrieved cloud properties is very difficult and a long-term effort because of significant spatial and temporal differences between the surface and satellite observing platforms. The ground-based measurements and retrievals, only carefully analyzed and validated, can provide a baseline for estimating errors in the satellite products. Even though the validation effort is so difficult, a significant progress has been made during the proposed study period, and the major accomplishments are summarized in the follow.

Stochastic Downscaling of Digital Elevation Models

NASA Astrophysics Data System (ADS)

Rasera, Luiz Gustavo; Mariethoz, Gregoire; Lane, Stuart N.

2016-04-01

High-resolution digital elevation models (HR-DEMs) are extremely important for the understanding of small-scale geomorphic processes in Alpine environments. In the last decade, remote sensing techniques have experienced a major technological evolution, enabling fast and precise acquisition of HR-DEMs. However, sensors designed to measure elevation data still feature different spatial resolution and coverage capabilities. Terrestrial altimetry allows the acquisition of HR-DEMs with centimeter to millimeter-level precision, but only within small spatial extents and often with dead ground problems. Conversely, satellite radiometric sensors are able to gather elevation measurements over large areas but with limited spatial resolution. In the present study, we propose an algorithm to downscale low-resolution satellite-based DEMs using topographic patterns extracted from HR-DEMs derived for example from ground-based and airborne altimetry. The method consists of a multiple-point geostatistical simulation technique able to generate high-resolution elevation data from low-resolution digital elevation models (LR-DEMs). Initially, two collocated DEMs with different spatial resolutions serve as an input to construct a database of topographic patterns, which is also used to infer the statistical relationships between the two scales. High-resolution elevation patterns are then retrieved from the database to downscale a LR-DEM through a stochastic simulation process. The output of the simulations are multiple equally probable DEMs with higher spatial resolution that also depict the large-scale geomorphic structures present in the original LR-DEM. As these multiple models reflect the uncertainty related to the downscaling, they can be employed to quantify the uncertainty of phenomena that are dependent on fine topography, such as catchment hydrological processes. The proposed methodology is illustrated for a case study in the Swiss Alps. A swissALTI3D HR-DEM (with 5 m resolution) and a SRTM-derived LR-DEM from the Western Alps are used to downscale a SRTM-based LR-DEM from the eastern part of the Alps. The results show that the method is capable of generating multiple high-resolution synthetic DEMs that reproduce the spatial structure and statistics of the original DEM.

Integration of airborne Thematic Mapper Simulator (TMS) data and digitized aerial photography via an ISH transformation. [Intensity Saturation Hue

NASA Technical Reports Server (NTRS)

Ambrosia, Vincent G.; Myers, Jeffrey S.; Ekstrand, Robert E.; Fitzgerald, Michael T.

1991-01-01

A simple method for enhancing the spatial and spectral resolution of disparate data sets is presented. Two data sets, digitized aerial photography at a nominal spatial resolution 3,7 meters and TMS digital data at 24.6 meters, were coregistered through a bilinear interpolation to solve the problem of blocky pixel groups resulting from rectification expansion. The two data sets were then subjected to intensity-saturation-hue (ISH) transformations in order to 'blend' the high-spatial-resolution (3.7 m) digitized RC-10 photography with the high spectral (12-bands) and lower spatial (24.6 m) resolution TMS digital data. The resultant merged products make it possible to perform large-scale mapping, ease photointerpretation, and can be derived for any of the 12 available TMS spectral bands.

Resolution Analysis of finite fault inversions: A back-projection approach.

NASA Astrophysics Data System (ADS)

Ji, C.; Shao, G.

2007-12-01

The resolution of inverted source models of large earthquakes is controlled by frequency contents of "coherent" (or "useful") seismic observations and their spatial distribution. But it is difficult to distinguish whether some features consistent during different inversions are really required by data or a consequence of "prior" information, such as velocity structures, fault geometry, model parameterizations. Here, we investigate the model spatial resolution by first back projecting and stacking the data at the source regions and then analyzing the spatial- temporal variations of the focusing regions, which arbitrarily defined as the regions with 90% of the peak focusing amplitude. Our preliminary results indicated 1) The spatial-temporal resolution at a particularly direction is controlled by the region of directivity parameter [pcos(θ)] within the seismic network, where p is the horizontal slowness from the hypocenter and θ is the difference between the station azimuth and this orientation. Therefore, the network aperture is more important than the number of stations. 2) Simple stacking method is a robust method to capture the asperities but the sizes of focusing regions are usually much larger than what data could resolve. By carefully weighting the data before the stacking could enhance the spatial resolution in a particular direction. 3) The results based on the teleseismic P waves of a local network usually surfers the trade-off between the source's spatial location and its rupture time. The resolution of the 2001 Kunlunshan earthquake and 2006 Kuril island earthquake will be investigated.

Optimizing landslide susceptibility zonation: Effects of DEM spatial resolution and slope unit delineation on logistic regression models

NASA Astrophysics Data System (ADS)

Schlögel, R.; Marchesini, I.; Alvioli, M.; Reichenbach, P.; Rossi, M.; Malet, J.-P.

2018-01-01

We perform landslide susceptibility zonation with slope units using three digital elevation models (DEMs) of varying spatial resolution of the Ubaye Valley (South French Alps). In so doing, we applied a recently developed algorithm automating slope unit delineation, given a number of parameters, in order to optimize simultaneously the partitioning of the terrain and the performance of a logistic regression susceptibility model. The method allowed us to obtain optimal slope units for each available DEM spatial resolution. For each resolution, we studied the susceptibility model performance by analyzing in detail the relevance of the conditioning variables. The analysis is based on landslide morphology data, considering either the whole landslide or only the source area outline as inputs. The procedure allowed us to select the most useful information, in terms of DEM spatial resolution, thematic variables and landslide inventory, in order to obtain the most reliable slope unit-based landslide susceptibility assessment.

Spatially-controlled illumination with rescan confocal microscopy enhances image quality, resolution and reduces photodamage

NASA Astrophysics Data System (ADS)

Krishnaswami, Venkataraman; De Luca, Giulia M. R.; Breedijk, Ronald M. P.; Van Noorden, Cornelis J. F.; Manders, Erik M. M.; Hoebe, Ron A.

2017-02-01

Fluorescence microscopy is an important tool in biomedical imaging. An inherent trade-off lies between image quality and photodamage. Recently, we have introduced rescan confocal microscopy (RCM) that improves the lateral resolution of a confocal microscope down to 170 nm. Previously, we have demonstrated that with controlled-light exposure microscopy, spatial control of illumination reduces photodamage without compromising image quality. Here, we show that the combination of these two techniques leads to high resolution imaging with reduced photodamage without compromising image quality. Implementation of spatially-controlled illumination was carried out in RCM using a line scanning-based approach. Illumination is spatially-controlled for every line during imaging with the help of a prediction algorithm that estimates the spatial profile of the fluorescent specimen. The estimation is based on the information available from previously acquired line images. As a proof-of-principle, we show images of N1E-115 neuroblastoma cells, obtained by this new setup with reduced illumination dose, improved resolution and without compromising image quality.

The spatial resolving power of earth resources satellites: A review

NASA Technical Reports Server (NTRS)

Townshend, J. R. G.

1980-01-01

The significance of spatial resolving power on the utility of current and future Earth resources satellites is critically discussed and the relative merits of different approaches in defining and estimating spatial resolution are outlined. It is shown that choice of a particular measure of spatial resolution depends strongly on the particular needs of the user. Several experiments have simulated the capabilities of future satellite systems by degradation of aircraft images. Surprisingly, many of these indicated that improvements in resolution may lead to a reduction in the classification accuracy of land cover types using computer assisted methods. However, where the frequency of boundary pixels is high, the converse relationship is found. Use of imagery dependent upon visual interpretation is likely to benefit more consistently from higher resolutions. Extraction of information from images will depend upon several other factors apart from spatial resolving power: these include characteristics of the terrain being sensed, the image processing methods that are applied as well as certain sensor characteristics.

Combined Landsat-8 and Sentinel-2 Burned Area Mapping

NASA Astrophysics Data System (ADS)

Huang, H.; Roy, D. P.; Zhang, H.; Boschetti, L.; Yan, L.; Li, Z.

2017-12-01

Fire products derived from coarse spatial resolution satellite data have become an important source of information for the multiple user communities involved in fire science and applications. The advent of the MODIS on NASA's Terra and Aqua satellites enabled systematic production of 500m global burned area maps. There is, however, an unequivocal demand for systematically generated higher spatial resolution burned area products, in particular to examine the role of small-fires for various applications. Moderate spatial resolution contemporaneous satellite data from Landsat-8 and the Sentinel-2A and -2B sensors provide the opportunity for detailed spatial mapping of burned areas. Combined, these polar-orbiting systems provide 10m to 30m multi-spectral global coverage more than once every three days. This NASA funded research presents results to prototype a combined Landsat-8 Sentinel-2 burned area product. The Landsat-8 and Sentinel-2 pre-processing, the time-series burned area mapping algorithm, and preliminary results and validation using high spatial resolution commercial satellite data over Africa are presented.

Downscaling of Seasonal Landsat-8 and MODIS Land Surface Temperature (LST) in Kolkata, India

NASA Astrophysics Data System (ADS)

Garg, R. D.; Guha, S.; Mondal, A.; Lakshmi, V.; Kundu, S.

2017-12-01

The quality of life of urban people is affected by urban heat environment. The urban heat studies can be carried out using remotely sensed thermal infrared imagery for retrieving Land Surface Temperature (LST). Currently, high spatial resolution (<200 m) thermal images are limited and their temporal resolution is low (e.g., 17 days of Landsat-8). Coarse spatial resolution (1000 m) and high temporal resolution (daily) thermal images of MODIS (Moderate Resolution Imaging Spectroradiometer) are frequently available. The present study is to downscale spatially coarser resolution of the thermal image to fine resolution thermal image using regression based downscaling technique. This method is based on the relationship between (LST) and vegetation indices (e.g., Normalized Difference Vegetation Index or NDVI) over a heterogeneous landscape. The Kolkata metropolitan city, which experiences a tropical wet-and-dry type of climate has been selected for the study. This study applied different seasonal open source satellite images viz., Landsat-8 and Terra MODIS. The Landsat-8 images are aggregated at 960 m resolution and downscaled into 480, 240 120 and 60 m. Optical and thermal resolution of Landsat-8 and MODIS are 30 m and 60 m; 250 m and 1000 m respectively. The homogeneous land cover areas have shown better accuracy than heterogeneous land cover areas. The downscaling method plays a crucial role while the spatial resolution of thermal band renders it unable for advanced study. Key words: Land Surface Temperature (LST), Downscale, MODIS, Landsat, Kolkata

Prevalence of pure versus mixed snow cover pixels across spatial resolutions in alpine environments: implications for binary and fractional remote sensing approaches

USGS Publications Warehouse

Selkowitz, David J.; Forster, Richard; Caldwell, Megan K.

2014-01-01

Remote sensing of snow-covered area (SCA) can be binary (indicating the presence/absence of snow cover at each pixel) or fractional (indicating the fraction of each pixel covered by snow). Fractional SCA mapping provides more information than binary SCA, but is more difficult to implement and may not be feasible with all types of remote sensing data. The utility of fractional SCA mapping relative to binary SCA mapping varies with the intended application as well as by spatial resolution, temporal resolution and period of interest, and climate. We quantified the frequency of occurrence of partially snow-covered (mixed) pixels at spatial resolutions between 1 m and 500 m over five dates at two study areas in the western U.S., using 0.5 m binary SCA maps derived from high spatial resolution imagery aggregated to fractional SCA at coarser spatial resolutions. In addition, we used in situ monitoring to estimate the frequency of partially snow-covered conditions for the period September 2013–August 2014 at 10 60-m grid cell footprints at two study areas with continental snow climates. Results from the image analysis indicate that at 40 m, slightly above the nominal spatial resolution of Landsat, mixed pixels accounted for 25%–93% of total pixels, while at 500 m, the nominal spatial resolution of MODIS bands used for snow cover mapping, mixed pixels accounted for 67%–100% of total pixels. Mixed pixels occurred more commonly at the continental snow climate site than at the maritime snow climate site. The in situ data indicate that some snow cover was present between 186 and 303 days, and partial snow cover conditions occurred on 10%–98% of days with snow cover. Four sites remained partially snow-free throughout most of the winter and spring, while six sites were entirely snow covered throughout most or all of the winter and spring. Within 60 m grid cells, the late spring/summer transition from snow-covered to snow-free conditions lasted 17–56 days and averaged 37 days. Our results suggest that mixed snow-covered snow-free pixels are common at the spatial resolutions imaged by both the Landsat and MODIS sensors. This highlights the additional information available from fractional SCA products and suggests fractional SCA can provide a major advantage for hydrological and climatological monitoring and modeling, particularly when accurate representation of the spatial distribution of snow cover is critical.

First experiment on retrieval of tropospheric NO2 over polluted areas with 2.4-km spatial resolution basing on satellite spectral measurements

NASA Astrophysics Data System (ADS)

Postylyakov, Oleg V.; Borovski, Alexander N.; Makarenkov, Aleksandr A.

2017-11-01

Three satellites of the Resurs-P series (№1, №2, №3) aimed for remote sensing of the Earth began to operate in Russia in 2013-2016. Hyperspectral instruments GSA onboard Resurs-P perform routine imaging of the Earth surface in the spectral range of 400-1000 nm with the spectral resolution better than 10 nm and the spatial resolution of 30 m. In a special regime the GSA/Resurs-P may reach higher spectral resolution with the spatial resolution of 120 m and be used for retrieval of the tropospheric NO2 spatial distribution. We developed the first GSA/Resurs-P algorithm for the tropospheric NO2 retrieval and shortly analyze the first results for the most polluted Hebei province of China. The developed GSA/Resurs-P algorithm shows the spatial resolution of about 2.4 km for tropospheric NO2 pollution what significantly exceed resolution of other available now satellite instruments and considered as a target for future geostationary (GEO) missions for monitoring of tropospheric NO2 pollution. Differ to the currently operated low-Earth orbit (LEO) instruments, which may provide global distribution of NO2 every one or two days, GSA performs NO2 measurement on request. The precision of the NO2 measurements with 2.4 km resolution is about 2.5x1015 mol/cm2 (for DSCD) therefore it is recommended to use it for investigation of the tropospheric NO2 in polluted areas. Thus GSA/Resurs-P is the interesting and unique tool for NO2 pollution investigations and testing methods of interpretation of future high-resolution satellite data on pollutions and their emissions.

Emtricitabine, Rilpivirine, and Tenofovir

MedlinePlus

... tri sit' uh bean) (ril'' pi vir' een) (te noe' fo veer)Emtricitabine, rilpivirine, and tenofovir should ... may cause symptoms in people with weak immune systems), or liver or kidney disease.tell your doctor ...

Single image super-resolution via regularized extreme learning regression for imagery from microgrid polarimeters

NASA Astrophysics Data System (ADS)

Sargent, Garrett C.; Ratliff, Bradley M.; Asari, Vijayan K.

2017-08-01

The advantage of division of focal plane imaging polarimeters is their ability to obtain temporally synchronized intensity measurements across a scene; however, they sacrifice spatial resolution in doing so due to their spatially modulated arrangement of the pixel-to-pixel polarizers and often result in aliased imagery. Here, we propose a super-resolution method based upon two previously trained extreme learning machines (ELM) that attempt to recover missing high frequency and low frequency content beyond the spatial resolution of the sensor. This method yields a computationally fast and simple way of recovering lost high and low frequency content from demosaicing raw microgrid polarimetric imagery. The proposed method outperforms other state-of-the-art single-image super-resolution algorithms in terms of structural similarity and peak signal-to-noise ratio.

Replacement of Dietary Saturated Fat by PUFA-Rich Pumpkin Seed Oil Attenuates Non-Alcoholic Fatty Liver Disease and Atherosclerosis Development, with Additional Health Effects of Virgin over Refined Oil

PubMed Central

Morrison, Martine C.; Mulder, Petra; Stavro, P. Mark; Suárez, Manuel; Arola-Arnal, Anna; van Duyvenvoorde, Wim; Kooistra, Teake; Wielinga, Peter Y.; Kleemann, Robert

2015-01-01

Background and Aims As dietary saturated fatty acids are associated with metabolic and cardiovascular disease, a potentially interesting strategy to reduce disease risk is modification of the quality of fat consumed. Vegetable oils represent an attractive target for intervention, as they largely determine the intake of dietary fats. Furthermore, besides potential health effects conferred by the type of fatty acids in a vegetable oil, other minor components (e.g. phytochemicals) may also have health benefits. Here, we investigated the potential long-term health effects of isocaloric substitution of dietary fat (i.e. partial replacement of saturated by unsaturated fats), as well as putative additional effects of phytochemicals present in unrefined (virgin) oil on development of non-alcoholic fatty liver disease (NAFLD) and associated atherosclerosis. For this, we used pumpkin seed oil, because it is high in unsaturated fatty acids and a rich source of phytochemicals. Methods ApoE*3Leiden mice were fed a Western-type diet (CON) containing cocoa butter (15% w/w) and cholesterol (1% w/w) for 20 weeks to induce risk factors and disease endpoints. In separate groups, cocoa butter was replaced by refined (REF) or virgin (VIR) pumpkin seed oil (comparable in fatty acid composition, but different in phytochemical content). Results Both oils improved dyslipidaemia, with decreased (V)LDL-cholesterol and triglyceride levels in comparison with CON, and additional cholesterol-lowering effects of VIR over REF. While REF did not affect plasma inflammatory markers, VIR reduced circulating serum amyloid A and soluble vascular adhesion molecule-1. NAFLD and atherosclerosis development was modestly reduced in REF, and VIR strongly decreased liver steatosis and inflammation as well as atherosclerotic lesion area and severity. Conclusions Overall, we show that an isocaloric switch from a diet rich in saturated fat to a diet rich in unsaturated fat can attenuate NAFLD and atherosclerosis development. Phytochemical-rich virgin pumpkin seed oil exerts additional anti-inflammatory effects resulting in more pronounced health effects. PMID:26405765

Replacement of Dietary Saturated Fat by PUFA-Rich Pumpkin Seed Oil Attenuates Non-Alcoholic Fatty Liver Disease and Atherosclerosis Development, with Additional Health Effects of Virgin over Refined Oil.

PubMed

Morrison, Martine C; Mulder, Petra; Stavro, P Mark; Suárez, Manuel; Arola-Arnal, Anna; van Duyvenvoorde, Wim; Kooistra, Teake; Wielinga, Peter Y; Kleemann, Robert

2015-01-01

As dietary saturated fatty acids are associated with metabolic and cardiovascular disease, a potentially interesting strategy to reduce disease risk is modification of the quality of fat consumed. Vegetable oils represent an attractive target for intervention, as they largely determine the intake of dietary fats. Furthermore, besides potential health effects conferred by the type of fatty acids in a vegetable oil, other minor components (e.g. phytochemicals) may also have health benefits. Here, we investigated the potential long-term health effects of isocaloric substitution of dietary fat (i.e. partial replacement of saturated by unsaturated fats), as well as putative additional effects of phytochemicals present in unrefined (virgin) oil on development of non-alcoholic fatty liver disease (NAFLD) and associated atherosclerosis. For this, we used pumpkin seed oil, because it is high in unsaturated fatty acids and a rich source of phytochemicals. ApoE*3Leiden mice were fed a Western-type diet (CON) containing cocoa butter (15% w/w) and cholesterol (1% w/w) for 20 weeks to induce risk factors and disease endpoints. In separate groups, cocoa butter was replaced by refined (REF) or virgin (VIR) pumpkin seed oil (comparable in fatty acid composition, but different in phytochemical content). Both oils improved dyslipidaemia, with decreased (V)LDL-cholesterol and triglyceride levels in comparison with CON, and additional cholesterol-lowering effects of VIR over REF. While REF did not affect plasma inflammatory markers, VIR reduced circulating serum amyloid A and soluble vascular adhesion molecule-1. NAFLD and atherosclerosis development was modestly reduced in REF, and VIR strongly decreased liver steatosis and inflammation as well as atherosclerotic lesion area and severity. Overall, we show that an isocaloric switch from a diet rich in saturated fat to a diet rich in unsaturated fat can attenuate NAFLD and atherosclerosis development. Phytochemical-rich virgin pumpkin seed oil exerts additional anti-inflammatory effects resulting in more pronounced health effects.

Lactobacilli and Bifidobacteria Promote Immune Homeostasis by Modulating Innate Immune Responses to Human Rotavirus in Neonatal Gnotobiotic Pigs

PubMed Central

Vlasova, Anastasia N.; Chattha, Kuldeep S.; Kandasamy, Sukumar; Liu, Zhe; Esseili, Malak; Shao, Lulu; Rajashekara, Gireesh; Saif, Linda J.

2013-01-01

The effects of co-colonization with Lactobacillus rhamnosus GG (LGG) and Bifidobacterium lactis Bb12 (Bb12) on 3-dose vaccination with attenuated HRV and challenge with virulent human rotavirus (VirHRV) were assessed in 4 groups of gnotobiotic (Gn) pigs: Pro+Vac (probiotic-colonized/vaccinated), Vac (vaccinated), Pro (probiotic-colonized, non-vaccinated) and Control (non-colonized, non-vaccinated). Subsets of pigs were euthanized pre- [post-challenge day (PCD) 0] and post (PCD7)-VirHRV challenge to assess diarrhea, fecal HRV shedding and dendritic cell/innate immune responses. Post-challenge, Pro+Vac and Vac groups were completely protected from diarrhea; protection rates against HRV shedding were 100% and 83%, respectively. Diarrhea and HRV shedding were reduced in Pro compared to Control pigs following VirHRV challenge. Diarrhea scores and virus shedding were significantly higher in Controls, compared to all other groups, coincident with significantly higher serum interferon-alpha levels post-challenge. LGG+Bb12 colonization ±vaccine promoted immunomaturation as reflected by increased frequencies of CD4, SWC3a, CD11R1, MHCII expressing mononuclear cells (MNCs) and conventional dendritic cells in intestinal tissues and blood post-challenge. Colonization decreased frequencies of toll-like receptors (TLR) 2 and TLR4 expressing MNCs from vaccinated pigs (Pro+Vac) pre-challenge and increased frequencies of TLR3 expressing MNCs from Pro pigs post-challenge, suggesting that probiotics likely exert anti-inflammatory (TLR2 and 4 down-regulation) and antiviral (TLR3 up-regulation by HRV dsRNA) actions via TLR signaling. Probiotic colonization alone (Pro) increased frequencies of intestinal and systemic apoptotic MNCs pre-challenge, thereby regulating immune hyperreactivity and tolerance. However, these frequencies were decreased in intestinal and systemic tissues post-challenge, moderating HRV-induced apoptosis. Additionally, post-challenge, Pro+Vac and Pro groups had significantly decreased MNC proliferation, suggesting that probiotics control excessive lymphoproliferative reactions upon VirHRV challenge. We conclude that in the neonatal Gn pig disease model, selected probiotics contribute to immunomaturation, regulate immune homeostasis and modulate vaccine and virulent HRV effects, thereby moderating HRV diarrhea. PMID:24098572

Comparing the imaging performance of computed super resolution and magnification tomosynthesis

NASA Astrophysics Data System (ADS)

Maidment, Tristan D.; Vent, Trevor L.; Ferris, William S.; Wurtele, David E.; Acciavatti, Raymond J.; Maidment, Andrew D. A.

2017-03-01

Computed super-resolution (SR) is a method of reconstructing images with pixels that are smaller than the detector element size; superior spatial resolution is achieved through the elimination of aliasing and alteration of the sampling function imposed by the reconstructed pixel aperture. By comparison, magnification mammography is a method of projection imaging that uses geometric magnification to increase spatial resolution. This study explores the development and application of magnification digital breast tomosynthesis (MDBT). Four different acquisition geometries are compared in terms of various image metrics. High-contrast spatial resolution was measured in various axes using a lead star pattern. A modified Defrise phantom was used to determine the low-frequency spatial resolution. An anthropomorphic phantom was used to simulate clinical imaging. Each experiment was conducted at three different magnifications: contact (1.04x), MAG1 (1.3x), and MAG2 (1.6x). All images were taken on our next generation tomosynthesis system, an in-house solution designed to optimize SR. It is demonstrated that both computed SR and MDBT (MAG1 and MAG2) provide improved spatial resolution over non-SR contact imaging. To achieve the highest resolution, SR and MDBT should be combined. However, MDBT is adversely affected by patient motion at higher magnifications. In addition, MDBT requires more radiation dose and delays diagnosis, since MDBT would be conducted upon recall. By comparison, SR can be conducted with the original screening data. In conclusion, this study demonstrates that computed SR and MDBT are both viable methods of imaging the breast.

GIEMS-D3: A new long-term, dynamical, high-spatial resolution inundation extent dataset at global scale

NASA Astrophysics Data System (ADS)

Aires, Filipe; Miolane, Léo; Prigent, Catherine; Pham Duc, Binh; Papa, Fabrice; Fluet-Chouinard, Etienne; Lehner, Bernhard

2017-04-01

The Global Inundation Extent from Multi-Satellites (GIEMS) provides multi-year monthly variations of the global surface water extent at 25kmx25km resolution. It is derived from multiple satellite observations. Its spatial resolution is usually compatible with climate model outputs and with global land surface model grids but is clearly not adequate for local applications that require the characterization of small individual water bodies. There is today a strong demand for high-resolution inundation extent datasets, for a large variety of applications such as water management, regional hydrological modeling, or for the analysis of mosquitos-related diseases. A new procedure is introduced to downscale the GIEMS low spatial resolution inundations to a 3 arc second (90 m) dataset. The methodology is based on topography and hydrography information from the HydroSHEDS database. A new floodability index is adopted and an innovative smoothing procedure is developed to ensure the smooth transition, in the high-resolution maps, between the low-resolution boxes from GIEMS. Topography information is relevant for natural hydrology environments controlled by elevation, but is more limited in human-modified basins. However, the proposed downscaling approach is compatible with forthcoming fusion with other more pertinent satellite information in these difficult regions. The resulting GIEMS-D3 database is the only high spatial resolution inundation database available globally at the monthly time scale over the 1993-2007 period. GIEMS-D3 is assessed by analyzing its spatial and temporal variability, and evaluated by comparisons to other independent satellite observations from visible (Google Earth and Landsat), infrared (MODIS) and active microwave (SAR).

Super-resolution mapping using multi-viewing CHRIS/PROBA data

NASA Astrophysics Data System (ADS)

Dwivedi, Manish; Kumar, Vinay

2016-04-01

High-spatial resolution Remote Sensing (RS) data provides detailed information which ensures high-definition visual image analysis of earth surface features. These data sets also support improved information extraction capabilities at a fine scale. In order to improve the spatial resolution of coarser resolution RS data, the Super Resolution Reconstruction (SRR) technique has become widely acknowledged which focused on multi-angular image sequences. In this study multi-angle CHRIS/PROBA data of Kutch area is used for SR image reconstruction to enhance the spatial resolution from 18 m to 6m in the hope to obtain a better land cover classification. Various SR approaches like Projection onto Convex Sets (POCS), Robust, Iterative Back Projection (IBP), Non-Uniform Interpolation and Structure-Adaptive Normalized Convolution (SANC) chosen for this study. Subjective assessment through visual interpretation shows substantial improvement in land cover details. Quantitative measures including peak signal to noise ratio and structural similarity are used for the evaluation of the image quality. It was observed that SANC SR technique using Vandewalle algorithm for the low resolution image registration outperformed the other techniques. After that SVM based classifier is used for the classification of SRR and data resampled to 6m spatial resolution using bi-cubic interpolation. A comparative analysis is carried out between classified data of bicubic interpolated and SR derived images of CHRIS/PROBA and SR derived classified data have shown a significant improvement of 10-12% in the overall accuracy. The results demonstrated that SR methods is able to improve spatial detail of multi-angle images as well as the classification accuracy.

Solar Confocal Interferometers for Sub-Picometer-Resolution Spectral Filters

NASA Technical Reports Server (NTRS)

Gary, G. Allen; Pietraszewski, Chris; West, Edward A.; Dines, Terence C.

2006-01-01

The confocal Fabry-Perot interferometer allows sub-picometer spectral resolution of Fraunhofer line profiles. Such high spectral resolution is needed to keep pace with the higher spatial resolution of the new set of large-aperture solar telescopes. The line-of-sight spatial resolution derived for line profile inversions would then track the improvements of the transverse spatial scale provided by the larger apertures. The confocal interferometer's unique properties allow a simultaneous increase in both etendue and spectral power. Methods: We have constructed and tested two confocal interferometers. Conclusions: In this paper we compare the confocal interferometer with other spectral imaging filters, provide initial design parameters, show construction details for two designs, and report on the laboratory test results for these interferometers, and propose a multiple etalon system for future testing of these units and to obtain sub-picometer spectral resolution information on the photosphere in both the visible and near-infrared.

Quality evaluation of pansharpened hyperspectral images generated using multispectral images

NASA Astrophysics Data System (ADS)

Matsuoka, Masayuki; Yoshioka, Hiroki

2012-11-01

Hyperspectral remote sensing can provide a smooth spectral curve of a target by using a set of higher spectral resolution detectors. The spatial resolution of the hyperspectral images, however, is generally much lower than that of multispectral images due to the lower energy of incident radiation. Pansharpening is an image-fusion technique that generates higher spatial resolution multispectral images by combining lower resolution multispectral images with higher resolution panchromatic images. In this study, higher resolution hyperspectral images were generated by pansharpening of simulated lower hyperspectral and higher multispectral data. Spectral and spatial qualities of pansharpened images, then, were accessed in relation to the spectral bands of multispectral images. Airborne hyperspectral data of AVIRIS was used in this study, and it was pansharpened using six methods. Quantitative evaluations of pansharpened image are achieved using two frequently used indices, ERGAS, and the Q index.

Resolution-enhanced Mapping Spectrometer

NASA Technical Reports Server (NTRS)

Kumer, J. B.; Aubrun, J. N.; Rosenberg, W. J.; Roche, A. E.

1993-01-01

A familiar mapping spectrometer implementation utilizes two dimensional detector arrays with spectral dispersion along one direction and spatial along the other. Spectral images are formed by spatially scanning across the scene (i.e., push-broom scanning). For imaging grating and prism spectrometers, the slit is perpendicular to the spatial scan direction. For spectrometers utilizing linearly variable focal-plane-mounted filters the spatial scan direction is perpendicular to the direction of spectral variation. These spectrometers share the common limitation that the number of spectral resolution elements is given by the number of pixels along the spectral (or dispersive) direction. Resolution enhancement by first passing the light input to the spectrometer through a scanned etalon or Michelson is discussed. Thus, while a detector element is scanned through a spatial resolution element of the scene, it is also temporally sampled. The analysis for all the pixels in the dispersive direction is addressed. Several specific examples are discussed. The alternate use of a Michelson for the same enhancement purpose is also discussed. Suitable for weight constrained deep space missions, hardware systems were developed including actuators, sensor, and electronics such that low-resolution etalons with performance required for implementation would weigh less than one pound.

Neutron imaging with lithium indium diselenide: Surface properties, spatial resolution, and computed tomography

NASA Astrophysics Data System (ADS)

Lukosi, Eric D.; Herrera, Elan H.; Hamm, Daniel S.; Burger, Arnold; Stowe, Ashley C.

2017-11-01

An array of lithium indium diselenide (LISe) scintillators were investigated for application in neutron imaging. The sensors, varying in thickness and surface roughness, were tested using both reflective and anti-reflective mounting to an aluminum window. The spatial resolution of each LISe scintillator was calculated using the knife-edge test and a modulation transfer function analysis. It was found that the anti-reflective backing case yielded higher spatial resolutions by up to a factor of two over the reflective backing case despite a reduction in measured light yield by an average of 1.97. In most cases, the use of an anti-reflective backing resulted in a higher spatial resolution than the 50 μm-thick ZnS(Cu):6 LiF comparison scintillation screen. The effect of surface roughness was not directly correlated to measured light yield or observed spatial resolution, but weighting the reflective backing case by the random surface roughness revealed that a linear relationship exists between the fractional change (RB/ARB) of the two. Finally, the LISe scintillator array was used in neutron computed tomography to investigate the features of halyomorpha halys with the reflective and anti-reflective backing.

On the Importance of Spatial Resolution for Flap Side Edge Noise Prediction

NASA Technical Reports Server (NTRS)

Mineck, Raymond E.; Khorrami, Mehdi R.

2017-01-01

A spatial resolution study of flap tip flow and the effects on the farfield noise signature for an 18%-scale, semispan Gulfstream aircraft model are presented. The NASA FUN3D unstructured, compressible Navier-Stokes solver was used to perform the highly resolved, time-dependent, detached eddy simulations of the flow field associated with the flap for this high-fidelity aircraft model. Following our previous work on the same model, the latest computations were undertaken to determine the causes of deficiencies observed in our earlier predictions of the steady and unsteady surface pressures and off-surface flow field at the flap tip regions, in particular the outboard tip area, where the presence of a cavity at the side-edge produces very complex flow features and interactions. The present results show gradual improvement in steady loading at the outboard flap edge region with increasing spatial resolution, yielding more accurate fluctuating surface pressures, off-surface flow field, and farfield noise with improved high-frequency content when compared with wind tunnel measurements. The spatial resolution trends observed in the present study demonstrate that the deficiencies reported in our previous computations are mostly caused by inadequate spatial resolution and are not related to the turbulence model.

Effects of satellite image spatial aggregation and resolution on estimates of forest land area

Treesearch

M.D. Nelson; R.E. McRoberts; G.R. Holden; M.E. Bauer

2009-01-01

Satellite imagery is being used increasingly in association with national forest inventories (NFIs) to produce maps and enhance estimates of forest attributes. We simulated several image spatial resolutions within sparsely and heavily forested study areas to assess resolution effects on estimates of forest land area, independent of other sensor characteristics. We...

Resolution modeling of dispersive imaging spectrometers

NASA Astrophysics Data System (ADS)

Silny, John F.

2017-08-01

This paper presents best practices for modeling the resolution of dispersive imaging spectrometers. The differences between sampling, width, and resolution are discussed. It is proposed that the spectral imaging community adopt a standard definition for resolution as the full-width at half maximum of the total line spread function. Resolution should be computed for each of the spectral, cross-scan spatial, and along-scan spatial/temporal dimensions separately. A physical optics resolution model is presented that incorporates the effects of slit diffraction and partial coherence, the result of which is a narrower slit image width and reduced radiometric throughput.

High-resolution infrared thermography for capturing wildland fire behaviour - RxCADRE 2012

Treesearch

Joseph J. O’Brien; E. Louise Loudermilk; Benjamin Hornsby; Andrew T. Hudak; Benjamin C. Bright; Matthew B. Dickinson; J. Kevin Hiers; Casey Teske; Roger D. Ottmar

2016-01-01

Wildland fire radiant energy emission is one of the only measurements of combustion that can be made at wide spatial extents and high temporal and spatial resolutions. Furthermore, spatially and temporally explicit measurements are critical for making inferences about fire effects and useful for examining patterns of fire spread. In this study we describe our...

CERES Search and Subset Tool

Atmospheric Science Data Center

2016-06-24

... data granules using a high resolution spatial metadata database and directly accessing the archived data granules. Subset results are ... data granules using a high resolution spatial metadata database and directly accessing the archived data granules. Subset results are ...

Optimization of the spatial resolution for the GE discovery PET/CT 710 by using NEMA NU 2-2007 standards

NASA Astrophysics Data System (ADS)

Yoon, Hyun Jin; Jeong, Young Jin; Son, Hye Joo; Kang, Do-Young; Hyun, Kyung-Yae; Lee, Min-Kyung

2015-01-01

The spatial resolution in positron emission tomography (PET) is fundamentally limited by the geometry of the detector element, the positron's recombination range with electrons, the acollinearity of the positron, the crystal decoding error, the penetration into the detector ring, and the reconstruction algorithms. In this paper, optimized parameters are suggested to produce high-resolution PET images by using an iterative reconstruction algorithm. A phantom with three point sources structured with three capillary tubes was prepared with an axial extension of less than 1 mm and was filled with 18F-fluorodeoxyglucose (18F-FDG) with concentrations above 200 MBq/cc. The performance measures of all the PET images were acquired according to the National Electrical Manufacturers Association (NEMA) NU 2-2007 standards procedures. The parameters for the iterative reconstruction were adjusted around the values recommended by General Electric GE, and the optimized values of the spatial resolution and the full width at half maximum (FWHM) or the full width at tenth of maximum (FWTM) values were found for the best PET resolution. The axial and the transverse spatial resolutions, according to the filtered back-projection (FBP) at 1 cm off-axis, were 4.81 and 4.48 mm, respectively. The axial and the transaxial spatial resolutions at 10 cm off-axis were 5.63 mm and 5.08 mm, respectively, and the trans-axial resolution at 10 cm was evaluated as the average of the radial and the tangential measurements. The recommended optimized parameters of the spatial resolution according to the NEMA phantom for the number of subsets, the number of iterations, and the Gaussian post-filter are 12, 3, and 3 mm for the iterative reconstruction VUE Point HD without the SharpIR algorithm (HD), and 12, 12, and 5.2 mm with SharpIR (HD.S), respectively, according to the Advantage Workstation Volume Share 5 (AW4.6). The performance measurements for the GE Discovery PET/CT 710 using the NEMA NU 2-2007 standards from our results will be helpful in the quantitative analysis of PET scanner images. The spatial resolution was modified more by using an improved algorithm such as HD.S, than by using HD and FBP. The use of the optimized parameters for iterative reconstructions is strongly recommended for qualitative images from the GE Discovery PET/CT 710 scanner.

A method for generating high resolution satellite image time series

NASA Astrophysics Data System (ADS)

Guo, Tao

2014-10-01

There is an increasing demand for satellite remote sensing data with both high spatial and temporal resolution in many applications. But it still is a challenge to simultaneously improve spatial resolution and temporal frequency due to the technical limits of current satellite observation systems. To this end, much R&D efforts have been ongoing for years and lead to some successes roughly in two aspects, one includes super resolution, pan-sharpen etc. methods which can effectively enhance the spatial resolution and generate good visual effects, but hardly preserve spectral signatures and result in inadequate analytical value, on the other hand, time interpolation is a straight forward method to increase temporal frequency, however it increase little informative contents in fact. In this paper we presented a novel method to simulate high resolution time series data by combing low resolution time series data and a very small number of high resolution data only. Our method starts with a pair of high and low resolution data set, and then a spatial registration is done by introducing LDA model to map high and low resolution pixels correspondingly. Afterwards, temporal change information is captured through a comparison of low resolution time series data, and then projected onto the high resolution data plane and assigned to each high resolution pixel according to the predefined temporal change patterns of each type of ground objects. Finally the simulated high resolution data is generated. A preliminary experiment shows that our method can simulate a high resolution data with a reasonable accuracy. The contribution of our method is to enable timely monitoring of temporal changes through analysis of time sequence of low resolution images only, and usage of costly high resolution data can be reduces as much as possible, and it presents a highly effective way to build up an economically operational monitoring solution for agriculture, forest, land use investigation, environment and etc. applications.

Analysis of axial spatial resolution in a variable resolution x-ray cone beam CT (VRX-CBCT) system

NASA Astrophysics Data System (ADS)

Dahi, Bahram; Keyes, Gary S.; Rendon, David A.; DiBianca, Frank A.

2008-03-01

The Variable Resolution X-ray (VRX) technique has been successfully used in a Cone-Beam CT (CBCT) system to increase the spatial resolution of CT images in the transverse plane. This was achieved by tilting the Flat Panel Detector (FPD) to smaller vrx y angles in a VRX Cone Beam CT (VRX-CBCT) system. In this paper, the effect on the axial spatial resolution of CT images created by the VRX-CBCT system is examined at different vrx x angles, where vrx x is the tilting angle of the FPD about its x-axis. An amorphous silicon FPD with a CsI scintillator is coupled with a micro-focus x-ray tube to form a CBCT. The FPD is installed on a rotating frame that allows rotation of up to 90° about x and y axes of the FPD. There is no rotation about the z-axis (i.e. normal to the imaging surface). Tilting the FPD about its x-axis (i.e. decreasing the vrx x angle) reduces both the width of the line-spread function and the sampling distance by a factor of sin vrx x, thereby increasing the theoretical detector pre-sampling spatial resolution proportionately. This results in thinner CT slices that in turn help increase the axial spatial resolution of the CT images. An in-house phantom is used to measure the MTF of the reconstructed CT images at different vrx x angles.

Initial phantom study comparing image quality in computed tomography using adaptive statistical iterative reconstruction and new adaptive statistical iterative reconstruction v.

PubMed

Lim, Kyungjae; Kwon, Heejin; Cho, Jinhan; Oh, Jongyoung; Yoon, Seongkuk; Kang, Myungjin; Ha, Dongho; Lee, Jinhwa; Kang, Eunju

2015-01-01

The purpose of this study was to assess the image quality of a novel advanced iterative reconstruction (IR) method called as "adaptive statistical IR V" (ASIR-V) by comparing the image noise, contrast-to-noise ratio (CNR), and spatial resolution from those of filtered back projection (FBP) and adaptive statistical IR (ASIR) on computed tomography (CT) phantom image. We performed CT scans at 5 different tube currents (50, 70, 100, 150, and 200 mA) using 3 types of CT phantoms. Scanned images were subsequently reconstructed in 7 different scan settings, such as FBP, and 3 levels of ASIR and ASIR-V (30%, 50%, and 70%). The image noise was measured in the first study using body phantom. The CNR was measured in the second study using contrast phantom and the spatial resolutions were measured in the third study using a high-resolution phantom. We compared the image noise, CNR, and spatial resolution among the 7 reconstructed image scan settings to determine whether noise reduction, high CNR, and high spatial resolution could be achieved at ASIR-V. At quantitative analysis of the first and second studies, it showed that the images reconstructed using ASIR-V had reduced image noise and improved CNR compared with those of FBP and ASIR (P < 0.001). At qualitative analysis of the third study, it also showed that the images reconstructed using ASIR-V had significantly improved spatial resolution than those of FBP and ASIR (P < 0.001). Our phantom studies showed that ASIR-V provides a significant reduction in image noise and a significant improvement in CNR as well as spatial resolution. Therefore, this technique has the potential to reduce the radiation dose further without compromising image quality.

The influence of spatial resolution on human health risk co-benefit estimates for global climate policy assessments.

PubMed

Shih, Hsiu-Ching; Crawford-Brown, Douglas; Ma, Hwong-wen

2015-03-15

Assessment of the ability of climate policies to produce desired improvements in public health through co-benefits of air pollution reduction can consume resources in both time and research funds. These resources increase significantly as the spatial resolution of models increases. In addition, the level of spatial detail available in macroeconomic models at the heart of climate policy assessments is much lower than that available in traditional human health risk modeling. It is therefore important to determine whether increasing spatial resolution considerably affects risk-based decisions; which kinds of decisions might be affected; and under what conditions they will be affected. Human health risk co-benefits from carbon emissions reductions that bring about concurrent reductions in Particulate Matter (PM10) emissions is therefore examined here at four levels of spatial resolution (Uniform Nation, Uniform Region, Uniform County/city, Health Risk Assessment) in a case study of Taiwan as one of the geographic regions of a global macroeceonomic model, with results that are representative of small, industrialized nations within that global model. A metric of human health risk mortality (YOLL, years of life lost in life expectancy) is compared under assessments ranging from a "uniform simulation" in which there is no spatial resolution of changes in ambient air concentration under a policy to a "highly spatially resolved simulation" (called here Health Risk Assessment). PM10 is chosen in this study as the indicator of air pollution for which risks are assessed due to its significance as a co-benefit of carbon emissions reductions within climate mitigation policy. For the policy examined, the four estimates of mortality in the entirety of Taiwan are 747 YOLL, 834 YOLL, 984 YOLL and 916 YOLL, under Uniform Taiwan, Uniform Region, Uniform County and Health Risk Assessment respectively; or differences of 18%, 9%, 7% if the HRA methodology is taken as the baseline. While these differences are small compared to uncertainties in health risk assessment more generally, the ranks of different regions and of emissions categories as the focus of regulatory efforts estimated at these four levels of spatial resolution are quite different. The results suggest that issues of risk equity within a nation might be missed by the lower levels of spatial resolution, suggesting that low resolution models are suited to calculating national cost-benefit ratios but not as suited to assessing co-benefits of climate policies reflecting intersubject variability in risk, or in identifying sub-national regions and emissions sectors on which to focus attention (although even here, the errors introduced by low spatial resolution are generally less than 40%). Copyright © 2014 Elsevier Ltd. All rights reserved.

The Effect of Magnetic Field on Positron Range and Spatial Resolution in an Integrated Whole-Body Time-Of-Flight PET/MRI System.

PubMed

Huang, Shih-Ying; Savic, Dragana; Yang, Jaewon; Shrestha, Uttam; Seo, Youngho

2014-11-01

Simultaneous imaging systems combining positron emission tomography (PET) and magnetic resonance imaging (MRI) have been actively investigated. A PET/MR imaging system (GE Healthcare) comprised of a time-of-flight (TOF) PET system utilizing silicon photomultipliers (SiPMs) and 3-tesla (3T) MRI was recently installed at our institution. The small-ring (60 cm diameter) TOF PET subsystem of this PET/MRI system can generate images with higher spatial resolution compared with conventional PET systems. We have examined theoretically and experimentally the effect of uniform magnetic fields on the spatial resolution for high-energy positron emitters. Positron emitters including 18 F, 124 I, and 68 Ga were simulated in water using the Geant4 Monte Carlo toolkit in the presence of a uniform magnetic field (0, 3, and 7 Tesla). The positron annihilation position was tracked to determine the 3D spatial distribution of the 511-keV gammy ray emission. The full-width at tenth maximum (FWTM) of the positron point spread function (PSF) was determined. Experimentally, 18 F and 68 Ga line source phantoms in air and water were imaged with an investigational PET/MRI system and a PET/CT system to investigate the effect of magnetic field on the spatial resolution of PET. The full-width half maximum (FWHM) of the line spread function (LSF) from the line source was determined as the system spatial resolution. Simulations and experimental results show that the in-plane spatial resolution was slightly improved at field strength as low as 3 Tesla, especially when resolving signal from high-energy positron emitters in the air-tissue boundary.

Super-Resolution Reconstruction of Remote Sensing Images Using Multifractal Analysis

PubMed Central

Hu, Mao-Gui; Wang, Jin-Feng; Ge, Yong

2009-01-01

Satellite remote sensing (RS) is an important contributor to Earth observation, providing various kinds of imagery every day, but low spatial resolution remains a critical bottleneck in a lot of applications, restricting higher spatial resolution analysis (e.g., intra-urban). In this study, a multifractal-based super-resolution reconstruction method is proposed to alleviate this problem. The multifractal characteristic is common in Nature. The self-similarity or self-affinity presented in the image is useful to estimate details at larger and smaller scales than the original. We first look for the presence of multifractal characteristics in the images. Then we estimate parameters of the information transfer function and noise of the low resolution image. Finally, a noise-free, spatial resolution-enhanced image is generated by a fractal coding-based denoising and downscaling method. The empirical case shows that the reconstructed super-resolution image performs well in detail enhancement. This method is not only useful for remote sensing in investigating Earth, but also for other images with multifractal characteristics. PMID:22291530

Electron-Beam Mapping of Vibrational Modes with Nanometer Spatial Resolution.

PubMed

Dwyer, C; Aoki, T; Rez, P; Chang, S L Y; Lovejoy, T C; Krivanek, O L

2016-12-16

We demonstrate that a focused beam of high-energy electrons can be used to map the vibrational modes of a material with a spatial resolution of the order of one nanometer. Our demonstration is performed on boron nitride, a polar dielectric which gives rise to both localized and delocalized electron-vibrational scattering, either of which can be selected in our off-axial experimental geometry. Our experimental results are well supported by our calculations, and should reconcile current controversy regarding the spatial resolution achievable in vibrational mapping with focused electron beams.

Reconstructed Image Spatial Resolution of Multiple Coincidences Compton Imager

NASA Astrophysics Data System (ADS)

Andreyev, Andriy; Sitek, Arkadiusz; Celler, Anna

2010-02-01

We study the multiple coincidences Compton imager (MCCI) which is based on a simultaneous acquisition of several photons emitted in cascade from a single nuclear decay. Theoretically, this technique should provide a major improvement in localization of a single radioactive source as compared to a standard Compton camera. In this work, we investigated the performance and limitations of MCCI using Monte Carlo computer simulations. Spatial resolutions of the reconstructed point source have been studied as a function of the MCCI parameters, including geometrical dimensions and detector characteristics such as materials, energy and spatial resolutions.

78 FR 43763 - Airworthiness Directives; The Boeing Company Airplanes

Federal Register 2010, 2011, 2012, 2013, 2014

2013-07-22

... holidays. The AD docket contains this AD, the regulatory evaluation, any comments received, and other... Applicability UPS and Virgin Atlantic Airways (VIR) stated that airplane line numbers 1199 through 1419...

Texture-adaptive hyperspectral video acquisition system with a spatial light modulator

NASA Astrophysics Data System (ADS)

Fang, Xiaojing; Feng, Jiao; Wang, Yongjin

2014-10-01

We present a new hybrid camera system based on spatial light modulator (SLM) to capture texture-adaptive high-resolution hyperspectral video. The hybrid camera system records a hyperspectral video with low spatial resolution using a gray camera and a high-spatial resolution video using a RGB camera. The hyperspectral video is subsampled by the SLM. The subsampled points can be adaptively selected according to the texture characteristic of the scene by combining with digital imaging analysis and computational processing. In this paper, we propose an adaptive sampling method utilizing texture segmentation and wavelet transform (WT). We also demonstrate the effectiveness of the sampled pattern on the SLM with the proposed method.

Functional cardiac magnetic resonance microscopy

NASA Astrophysics Data System (ADS)

Brau, Anja Christina Sophie

2003-07-01

The study of small animal models of human cardiovascular disease is critical to our understanding of the origin, progression, and treatment of this pervasive disease. Complete analysis of disease pathophysiology in these animal models requires measuring structural and functional changes at the level of the whole heart---a task for which an appropriate non-invasive imaging method is needed. The purpose of this work was thus to develop an imaging technique to support in vivo characterization of cardiac structure and function in rat and mouse models of cardiovascular disease. Whereas clinical cardiac magnetic resonance imaging (MRI) provides accurate assessment of the human heart, the extension of cardiac MRI from humans to rodents presents several formidable scaling challenges. Acquiring images of the mouse heart with organ definition and fluidity of contraction comparable to that achieved in humans requires an increase in spatial resolution by a factor of 3000 and an increase in temporal resolution by a factor of ten. No single technical innovation can meet the demanding imaging requirements imposed by the small animal. A functional cardiac magnetic resonance microscopy technique was developed by integrating improvements in physiological control, imaging hardware, biological synchronization of imaging, and pulse sequence design to achieve high-quality images of the murine heart with high spatial and temporal resolution. The specific methods and results from three different sets of imaging experiments are presented: (1) 2D functional imaging in the rat with spatial resolution of 175 mum2 x 1 mm and temporal resolution of 10 ms; (2) 3D functional imaging in the rat with spatial resolution of 100 mum 2 x 500 mum and temporal resolution of 30 ms; and (3) 2D functional imaging in the mouse with spatial resolution down to 100 mum2 x 1 mm and temporal resolution of 10 ms. The cardiac microscopy technique presented here represents a novel collection of technologies capable of acquiring routine high-quality images of murine cardiac structure and function with minimal artifacts and markedly higher spatial resolution compared to conventional techniques. This work is poised to serve a valuable role in the evaluation of cardiovascular disease and should find broad application in studies ranging from basic pathophysiology to drug discovery.

DOE Office of Scientific and Technical Information (OSTI.GOV)

Wu, Pei-Hsin; Chung, Hsiao-Wen; Tsai, Ping-Huei

Purpose: One of the technical advantages of functional magnetic resonance imaging (fMRI) is its precise localization of changes from neuronal activities. While current practice of fMRI acquisition at voxel size around 3 × 3 × 3 mm{sup 3} achieves satisfactory results in studies of basic brain functions, higher spatial resolution is required in order to resolve finer cortical structures. This study investigated spatial resolution effects on brain fMRI experiments using balanced steady-state free precession (bSSFP) imaging with 0.37 mm{sup 3} voxel volume at 3.0 T. Methods: In fMRI experiments, full and unilateral visual field 5 Hz flashing checkerboard stimulations weremore » given to healthy subjects. The bSSFP imaging experiments were performed at three different frequency offsets to widen the coverage, with functional activations in the primary visual cortex analyzed using the general linear model. Variations of the spatial resolution were achieved by removing outerk-space data components. Results: Results show that a reduction in voxel volume from 3.44 × 3.44 × 2 mm{sup 3} to 0.43 × 0.43 × 2 mm{sup 3} has resulted in an increase of the functional activation signals from (7.7 ± 1.7)% to (20.9 ± 2.0)% at 3.0 T, despite of the threefold SNR decreases in the original images, leading to nearly invariant functional contrast-to-noise ratios (fCNR) even at high spatial resolution. Activation signals aligning nicely with gray matter sulci at high spatial resolution would, on the other hand, have possibly been mistaken as noise at low spatial resolution. Conclusions: It is concluded that the bSSFP sequence is a plausible technique for fMRI investigations at submillimeter voxel widths without compromising fCNR. The reduction of partial volume averaging with nonactivated brain tissues to retain fCNR is uniquely suitable for high spatial resolution applications such as the resolving of columnar organization in the brain.« less

Real-time and quantitative isotropic spatial resolution susceptibility imaging for magnetic nanoparticles

NASA Astrophysics Data System (ADS)

Pi, Shiqiang; Liu, Wenzhong; Jiang, Tao

2018-03-01

The magnetic transparency of biological tissue allows the magnetic nanoparticle (MNP) to be a promising functional sensor and contrast agent. The complex susceptibility of MNPs, strongly influenced by particle concentration, excitation magnetic field and their surrounding microenvironment, provides significant implications for biomedical applications. Therefore, magnetic susceptibility imaging of high spatial resolution will give more detailed information during the process of MNP-aided diagnosis and therapy. In this study, we present a novel spatial magnetic susceptibility extraction method for MNPs under a gradient magnetic field, a low-frequency drive magnetic field, and a weak strength high-frequency magnetic field. Based on this novel method, a magnetic particle susceptibility imaging (MPSI) of millimeter-level spatial resolution (<3 mm) was achieved using our homemade imaging system. Corroborated by the experimental results, the MPSI shows real-time (1 s per frame acquisition) and quantitative abilities, and isotropic high resolution.

Signatures of Penumbral Magnetic Fields at Very High Spatial Resolution

NASA Astrophysics Data System (ADS)

Langhans, K.

2006-12-01

Full Stokes spectro-polarimetry, together with refined techniques to interpret the measurements and continual modeling efforts, have improved our understanding of sunspot penumbrae in the last years. In spite of this progress, an improvement in the spatial resolution of the observations is clearly needed to establish in a more direct way the fine structure of the penumbra. The discovery of dark penumbral cores by tet{l3 Sc02} suggests that we are starting to resolve the fundamental scales of the penumbra. Spectro-polarimetric measurements that are sensitive to the magnetic field in both the photosphere and higher layers, and obtained at a spatial resolution approaching 0.1 arcsec, may therefore allow us to draw firm conclusions about the fine scale organization of penumbral magnetic fields. In this paper I will discuss recent polarization measurements at very high spatial resolution, trying to reconcile the different scenarios put forward to explain the structure of the penumbra.

A comparison of multi-spectral, multi-angular, and multi-temporal remote sensing datasets for fractional shrub canopy mapping in Arctic Alaska

USGS Publications Warehouse

Selkowitz, D.J.

2010-01-01

Shrub cover appears to be increasing across many areas of the Arctic tundra biome, and increasing shrub cover in the Arctic has the potential to significantly impact global carbon budgets and the global climate system. For most of the Arctic, however, there is no existing baseline inventory of shrub canopy cover, as existing maps of Arctic vegetation provide little information about the density of shrub cover at a moderate spatial resolution across the region. Remotely-sensed fractional shrub canopy maps can provide this necessary baseline inventory of shrub cover. In this study, we compare the accuracy of fractional shrub canopy (> 0.5 m tall) maps derived from multi-spectral, multi-angular, and multi-temporal datasets from Landsat imagery at 30 m spatial resolution, Moderate Resolution Imaging SpectroRadiometer (MODIS) imagery at 250 m and 500 m spatial resolution, and MultiAngle Imaging Spectroradiometer (MISR) imagery at 275 m spatial resolution for a 1067 km2 study area in Arctic Alaska. The study area is centered at 69 ??N, ranges in elevation from 130 to 770 m, is composed primarily of rolling topography with gentle slopes less than 10??, and is free of glaciers and perennial snow cover. Shrubs > 0.5 m in height cover 2.9% of the study area and are primarily confined to patches associated with specific landscape features. Reference fractional shrub canopy is determined from in situ shrub canopy measurements and a high spatial resolution IKONOS image swath. Regression tree models are constructed to estimate fractional canopy cover at 250 m using different combinations of input data from Landsat, MODIS, and MISR. Results indicate that multi-spectral data provide substantially more accurate estimates of fractional shrub canopy cover than multi-angular or multi-temporal data. Higher spatial resolution datasets also provide more accurate estimates of fractional shrub canopy cover (aggregated to moderate spatial resolutions) than lower spatial resolution datasets, an expected result for a study area where most shrub cover is concentrated in narrow patches associated with rivers, drainages, and slopes. Including the middle infrared bands available from Landsat and MODIS in the regression tree models (in addition to the four standard visible and near-infrared spectral bands) typically results in a slight boost in accuracy. Including the multi-angular red band data available from MISR in the regression tree models, however, typically boosts accuracy more substantially, resulting in moderate resolution fractional shrub canopy estimates approaching the accuracy of estimates derived from the much higher spatial resolution Landsat sensor. Given the poor availability of snow and cloud-free Landsat scenes in many areas of the Arctic and the promising results demonstrated here by the MISR sensor, MISR may be the best choice for large area fractional shrub canopy mapping in the Alaskan Arctic for the period 2000-2009.

Temporal and spatial resolution required for imaging myocardial function

NASA Astrophysics Data System (ADS)

Eusemann, Christian D.; Robb, Richard A.

2004-05-01

4-D functional analysis of myocardial mechanics is an area of significant interest and research in cardiology and vascular/interventional radiology. Current multidimensional analysis is limited by insufficient temporal resolution of x-ray and magnetic resonance based techniques, but recent improvements in system design holds hope for faster and higher resolution scans to improve images of moving structures allowing more accurate functional studies, such as in the heart. This paper provides a basis for the requisite temporal and spatial resolution for useful imaging during individual segments of the cardiac cycle. Multiple sample rates during systole and diastole are compared to determine an adequate sample frequency to reduce regional myocardial tracking errors. Concurrently, out-of-plane resolution has to be sufficiently high to minimize partial volume effect. Temporal resolution and out-of-plane spatial resolution are related factors that must be considered together. The data used for this study is a DSR dynamic volume image dataset with high temporal and spatial resolution using implanted fiducial markers to track myocardial motion. The results of this study suggest a reduced exposure and scan time for x-ray and magnetic resonance imaging methods, since a lower sample rate during systole is sufficient, whereas the period of rapid filling during diastole requires higher sampling. This could potentially reduce the cost of these procedures and allow higher patient throughput.

Influence of hydration and annealing on structure, PSL yield and spatial resolution of pressed powder imaging plates of the X-ray storage phosphor CsBr:Eu2+

NASA Astrophysics Data System (ADS)

Kersting, E.; von Seggern, H.

2017-08-01

A new production route for europium doped cesium bromide (CsBr:Eu2+) imaging plates has been developed, synthesizing CsBr:Eu2+ powder from a precipitation reaction of aqueous CsBr solution with ethanol. This new route allows the control of features like homogeneous grain size and grain shape of the obtained powder. After drying and subsequent compacting the powder, disk-like samples were fabricated, and their resulting photostimulated luminescence (PSL) properties like yield and spatial resolution were determined. It will be shown that hydration of such disks causes the CsBr:Eu2+ powder to recrystallize starting from the humidity exposed surfaces to the sample interior up to a completely polycrystalline sample resulting in a decreasing PSL yield and an increasing resolution. Subsequent annealing leads to grain refinement combined with a large PSL yield increment and a minor effect on the spatial resolution. By first annealing the "as made" disk, one observes a strong increment of the PSL yield and almost no effect on the spatial resolution. During subsequent hydration, the recrystallization is hindered by minor structural changes of the grains. The related PSL yield drops slightly with increasing hydration time, and the spatial resolution drops considerably. The obtained PSL properties with respect to structure will be discussed with a simple model.

Subpixel target detection and enhancement in hyperspectral images

NASA Astrophysics Data System (ADS)

Tiwari, K. C.; Arora, M.; Singh, D.

2011-06-01

Hyperspectral data due to its higher information content afforded by higher spectral resolution is increasingly being used for various remote sensing applications including information extraction at subpixel level. There is however usually a lack of matching fine spatial resolution data particularly for target detection applications. Thus, there always exists a tradeoff between the spectral and spatial resolutions due to considerations of type of application, its cost and other associated analytical and computational complexities. Typically whenever an object, either manmade, natural or any ground cover class (called target, endmembers, components or class) gets spectrally resolved but not spatially, mixed pixels in the image result. Thus, numerous manmade and/or natural disparate substances may occur inside such mixed pixels giving rise to mixed pixel classification or subpixel target detection problems. Various spectral unmixing models such as Linear Mixture Modeling (LMM) are in vogue to recover components of a mixed pixel. Spectral unmixing outputs both the endmember spectrum and their corresponding abundance fractions inside the pixel. It, however, does not provide spatial distribution of these abundance fractions within a pixel. This limits the applicability of hyperspectral data for subpixel target detection. In this paper, a new inverse Euclidean distance based super-resolution mapping method has been presented that achieves subpixel target detection in hyperspectral images by adjusting spatial distribution of abundance fraction within a pixel. Results obtained at different resolutions indicate that super-resolution mapping may effectively aid subpixel target detection.

A New Approach in Downscaling Microwave Soil Moisture Product using Machine Learning

NASA Astrophysics Data System (ADS)

Abbaszadeh, Peyman; Yan, Hongxiang; Moradkhani, Hamid

2016-04-01

Understating the soil moisture pattern has significant impact on flood modeling, drought monitoring, and irrigation management. Although satellite retrievals can provide an unprecedented spatial and temporal resolution of soil moisture at a global-scale, their soil moisture products (with a spatial resolution of 25-50 km) are inadequate for regional study, where a resolution of 1-10 km is needed. In this study, a downscaling approach using Genetic Programming (GP), a specialized version of Genetic Algorithm (GA), is proposed to improve the spatial resolution of satellite soil moisture products. The GP approach was applied over a test watershed in United States using the coarse resolution satellite data (25 km) from Advanced Microwave Scanning Radiometer - EOS (AMSR-E) soil moisture products, the fine resolution data (1 km) from Moderate Resolution Imaging Spectroradiometer (MODIS) vegetation index, and ground based data including land surface temperature, vegetation and other potential physical variables. The results indicated the great potential of this approach to derive the fine resolution soil moisture information applicable for data assimilation and other regional studies.

Detection of 1612 MHz OH emission in the semiregular variable stars RT Vir, R Crt and W Hya

NASA Astrophysics Data System (ADS)

Etoka, S.; Le Squeren, A. M.; Gerard, E.

2003-05-01

We present evidence of 1612 MHz emission in SR variable stars. The two SRb, RT Vir and R Crt, as well as the SRa W Hya have been monitored with the upgraded Nançay radio telescope since February 2001. All three objects have shown a weak 1612 MHz emission occuring in the velocity range of the strongest emission observed in the main-lines. Such a detection is the second observational evidence for emission in the 1612 MHz OH maser satellite line from SRb stars. It also confirms the presence of 1612 MHz emission in the SRa W Hya discovered by Etoka et al. (\\cite{etoka01}). Such a finding strongly suggests that the shell properties of those three objects are quite similar to those of the Mira stars with similar IR characteristics.

Identification of two bvg-repressed surface proteins of Bordetella pertussis.

PubMed Central

Stenson, T H; Peppler, M S

1995-01-01

Bordetella pertussis, the etiological agent of whooping cough, has the ability to modulate its phenotype in response to environmental conditions by using the BvgAS sensory transduction system which is encoded by the vir locus (now known as bvg). The BvgAS system is part of a large family of two-component sensory transduction systems which are common to a number of pathogenic bacteria. Although much is known about the proteins which exist in the B. pertussis virulent (X-mode or phase I) phenotype, relatively little is known about the proteins produced in the avirulent (C-mode or phase III) phenotype. We used sodium dodecyl sulfate-polyacrylamide gel electrophoresis and isoelectric focusing techniques to demonstrate the existence of at least 22 vir-repressed molecules which are increased in the avirulent phenotype. In addition, a series of monoclonal antibodies which are specific for the surface of avirulent B. pertussis were developed. Using immunological and protein techniques, we characterized two of these antigens as surface-exposed proteins. One of these antigens is expressed only in B. pertussis but not in the related species B. parapertussis and B. bronchiseptica. The other antigen is also present in B. parapertussis and B. bronchiseptica but is expressed at lower levels which are not regulated by bvg. The identification and characterization of vir-repressed proteins (and the genes which encode and regulate them) may help elucidate a physiological role for modulation of this obligate human pathogen. PMID:7558280

DOE Office of Scientific and Technical Information (OSTI.GOV)

Behroozi, Peter S.; Wechsler, Risa H.; Lu, Yu

We find that infalling dark matter halos (i.e., the progenitors of satellite halos) begin losing mass well outside the virial radius of their eventual host halos. The peak mass occurs at a range of clustercentric distances, with median and 68th percentile range ofmore » $$1.8^{+2.3}_{-1.0} \\,R_\\mathrm{vir,host}$$ for progenitors of z = 0 satellites. The peak circular velocity for infalling halos occurs at significantly larger distances ($$3.7^{+3.3}_{-2.2} \\,R_\\mathrm{vir,host}$$ at z = 0). This difference arises because different physical processes set peak circular velocity (typically, ~1:5 and larger mergers which cause transient circular velocity spikes) and peak mass (typically, smooth accretion) for infalling halos. We find that infalling halos also stop having significant mergers well before they enter the virial radius of their eventual hosts. Mergers larger than a 1:40 ratio in halo mass end for infalling halos at similar clustercentric distances (~1.9 R vir, host) as the end of overall mass accretion. However, mergers larger than 1:3 typically end for infalling halos at more than four virial radial away from their eventual hosts. This limits the ability of mergers to affect quenching and morphology changes in clusters. We also note that the transient spikes which set peak circular velocity may lead to issues with abundance matching on that parameter, including unphysical galaxy stellar mass growth profiles near clusters; we propose a simple observational test to check if a better halo proxy for galaxy stellar mass exists.« less

Dielectric properties of Asteroid Vesta's surface as constrained by Dawn VIR observations

NASA Astrophysics Data System (ADS)

Palmer, Elizabeth M.; Heggy, Essam; Capria, Maria T.; Tosi, Federico

2015-12-01

Earth and orbital-based radar observations of asteroids provide a unique opportunity to characterize surface roughness and the dielectric properties of their surfaces, as well as potentially explore some of their shallow subsurface physical properties. If the dielectric and topographic properties of asteroid's surfaces are defined, one can constrain their surface textural characteristics as well as potential subsurface volatile enrichment using the observed radar backscatter. To achieve this objective, we establish the first dielectric model of asteroid Vesta for the case of a dry, volatile-poor regolith-employing an analogy to the dielectric properties of lunar soil, and adjusted for the surface densities and temperatures deduced from Dawn's Visible and InfraRed mapping spectrometer (VIR). Our model suggests that the real part of the dielectric constant at the surface of Vesta is relatively constant, ranging from 2.3 to 2.5 from the night- to day-side of Vesta, while the loss tangent shows slight variation as a function of diurnal temperature, ranging from 6 × 10-3 to 8 × 10-3. We estimate the surface porosity to be ∼55% in the upper meter of the regolith, as derived from VIR observations. This is ∼12% higher than previous estimation of porosity derived from previous Earth-based X- and S-band radar observation. We suggest that the radar backscattering properties of asteroid Vesta will be mainly driven by the changes in surface roughness rather than potential dielectric variations in the upper regolith in the X- and S-band.

Influenza virus site recognized by a murine helper T cell specific for H1 strains. Localization to a nine amino acid sequence in the hemagglutinin molecule.

PubMed

Hackett, C J; Dietzschold, B; Gerhard, W; Ghrist, B; Knorr, R; Gillessen, D; Melchers, F

1983-08-01

The functional helper T cell line Vir-2, derived from a PR8 (H1N1) influenza virus-immunized BALB/c mouse, proliferates in response to syngeneic antigen-presenting cells and naturally occurring strains of subtype H1 human influenza virus from 1934-1957 and 1977-1980 isolates. A conserved region of the hemagglutinin molecule around amino acid position 115 in the heavy chain (HA1) was implicated as being important in this recognition by the lack of stimulatory activity associated with a glutamic acid to lysine substitution at position 115 in the laboratory mutant RV6, derived from wild-type PR8. Characterization of the stimulatory determinant on the wild-type hemagglutinin molecule was then undertaken using cleavage products and synthetic peptides. Vir-2 cells recognized the reduced and alkylated purified HA1 of PR8 virus, and this reactivity was retained after cleavage at methionine and tryptophan residues. High-pressure liquid chromatography separation of cleavage fragments indicated that a short sequence of the HA1 containing residue 115 was being recognized. This recognition was localized to a nine amino acid segment (positions 111-119) by assaying stimulation with synthetic peptide homologues of different lengths from that region. As with native hemagglutinin, Vir-2 cells responded to active peptides when presented by H-2d but not H-2k antigen-presenting cells.

Gamma-Ray Imager With High Spatial And Spectral Resolution

NASA Technical Reports Server (NTRS)

Callas, John L.; Varnell, Larry S.; Wheaton, William A.; Mahoney, William A.

1996-01-01

Gamma-ray instrument developed to enable both two-dimensional imaging at relatively high spatial resolution and spectroscopy at fractional-photon-energy resolution of about 10 to the negative 3rd power in photon-energy range from 10 keV to greater than 10 MeV. In its spectroscopic aspect, instrument enables identification of both narrow and weak gamma-ray spectral peaks.

High-resolution spatial modeling of daily weather elements for a catchment in the Oregon Cascade Mountains, United States

Treesearch

Christopher Daly; Jonathan W. Smith; Joseph I. Smith; Robert B. McKane

2007-01-01

High-quality daily meteorological data at high spatial resolution are essential for a variety of hydrologic and ecological modeling applications that support environmental risk assessments and decisionmaking. This paper describes the development. application. and assessment of methods to construct daily high resolution (~50-m cell size) meteorological grids for the...

Spatial Modeling and Uncertainty Assessment of Fine Scale Surface Processes Based on Coarse Terrain Elevation Data

NASA Astrophysics Data System (ADS)

Rasera, L. G.; Mariethoz, G.; Lane, S. N.

2017-12-01

Frequent acquisition of high-resolution digital elevation models (HR-DEMs) over large areas is expensive and difficult. Satellite-derived low-resolution digital elevation models (LR-DEMs) provide extensive coverage of Earth's surface but at coarser spatial and temporal resolutions. Although useful for large scale problems, LR-DEMs are not suitable for modeling hydrologic and geomorphic processes at scales smaller than their spatial resolution. In this work, we present a multiple-point geostatistical approach for downscaling a target LR-DEM based on available high-resolution training data and recurrent high-resolution remote sensing images. The method aims at generating several equiprobable HR-DEMs conditioned to a given target LR-DEM by borrowing small scale topographic patterns from an analogue containing data at both coarse and fine scales. An application of the methodology is demonstrated by using an ensemble of simulated HR-DEMs as input to a flow-routing algorithm. The proposed framework enables a probabilistic assessment of the spatial structures generated by natural phenomena operating at scales finer than the available terrain elevation measurements. A case study in the Swiss Alps is provided to illustrate the methodology.

A maximum likelihood method for high resolution proton radiography/proton CT

NASA Astrophysics Data System (ADS)

Collins-Fekete, Charles-Antoine; Brousmiche, Sébastien; Portillo, Stephen K. N.; Beaulieu, Luc; Seco, Joao

2016-12-01

Multiple Coulomb scattering (MCS) is the largest contributor to blurring in proton imaging. In this work, we developed a maximum likelihood least squares estimator that improves proton radiography’s spatial resolution. The water equivalent thickness (WET) through projections defined from the source to the detector pixels were estimated such that they maximizes the likelihood of the energy loss of every proton crossing the volume. The length spent in each projection was calculated through the optimized cubic spline path estimate. The proton radiographies were produced using Geant4 simulations. Three phantoms were studied here: a slanted cube in a tank of water to measure 2D spatial resolution, a voxelized head phantom for clinical performance evaluation as well as a parametric Catphan phantom (CTP528) for 3D spatial resolution. Two proton beam configurations were used: a parallel and a conical beam. Proton beams of 200 and 330 MeV were simulated to acquire the radiography. Spatial resolution is increased from 2.44 lp cm-1 to 4.53 lp cm-1 in the 200 MeV beam and from 3.49 lp cm-1 to 5.76 lp cm-1 in the 330 MeV beam. Beam configurations do not affect the reconstructed spatial resolution as investigated between a radiography acquired with the parallel (3.49 lp cm-1 to 5.76 lp cm-1) or conical beam (from 3.49 lp cm-1 to 5.56 lp cm-1). The improved images were then used as input in a photon tomography algorithm. The proton CT reconstruction of the Catphan phantom shows high spatial resolution (from 2.79 to 5.55 lp cm-1 for the parallel beam and from 3.03 to 5.15 lp cm-1 for the conical beam) and the reconstruction of the head phantom, although qualitative, shows high contrast in the gradient region. The proposed formulation of the optimization demonstrates serious potential to increase the spatial resolution (up by 65 % ) in proton radiography and greatly accelerate proton computed tomography reconstruction.

Evaluating Climate Causation of Conflict in Darfur Using Multi-temporal, Multi-resolution Satellite Image Datasets With Novel Analyses

NASA Astrophysics Data System (ADS)

Brown, I.; Wennbom, M.

2013-12-01

Climate change, population growth and changes in traditional lifestyles have led to instabilities in traditional demarcations between neighboring ethic and religious groups in the Sahel region. This has resulted in a number of conflicts as groups resort to arms to settle disputes. Such disputes often centre on or are justified by competition for resources. The conflict in Darfur has been controversially explained by resource scarcity resulting from climate change. Here we analyse established methods of using satellite imagery to assess vegetation health in Darfur. Multi-decadal time series of observations are available using low spatial resolution visible-near infrared imagery. Typically normalized difference vegetation index (NDVI) analyses are produced to describe changes in vegetation ';greenness' or ';health'. Such approaches have been widely used to evaluate the long term development of vegetation in relation to climate variations across a wide range of environments from the Arctic to the Sahel. These datasets typically measure peak NDVI observed over a given interval and may introduce bias. It is furthermore unclear how the spatial organization of sparse vegetation may affect low resolution NDVI products. We develop and assess alternative measures of vegetation including descriptors of the growing season, wetness and resource availability. Expanding the range of parameters used in the analysis reduces our dependence on peak NDVI. Furthermore, these descriptors provide a better characterization of the growing season than the single NDVI measure. Using multi-sensor data we combine high temporal/moderate spatial resolution data with low temporal/high spatial resolution data to improve the spatial representativity of the observations and to provide improved spatial analysis of vegetation patterns. The approach places the high resolution observations in the NDVI context space using a longer time series of lower resolution imagery. The vegetation descriptors derived are evaluated using independent high spatial resolution datasets that reveal the pattern and health of vegetation at metre scales. We also use climate variables to support the interpretation of these data. We conclude that the spatio-temporal patterns in Darfur vegetation and climate datasets suggest that labelling the conflict a climate-change conflict is inaccurate and premature.

SU-C-207A-01: A Novel Maximum Likelihood Method for High-Resolution Proton Radiography/proton CT

DOE Office of Scientific and Technical Information (OSTI.GOV)

Collins-Fekete, C; Centre Hospitalier University de Quebec, Quebec, QC; Mass General Hospital

2016-06-15

Purpose: Multiple Coulomb scattering is the largest contributor to blurring in proton imaging. Here we tested a maximum likelihood least squares estimator (MLLSE) to improve the spatial resolution of proton radiography (pRad) and proton computed tomography (pCT). Methods: The object is discretized into voxels and the average relative stopping power through voxel columns defined from the source to the detector pixels is optimized such that it maximizes the likelihood of the proton energy loss. The length spent by individual protons in each column is calculated through an optimized cubic spline estimate. pRad images were first produced using Geant4 simulations. Anmore » anthropomorphic head phantom and the Catphan line-pair module for 3-D spatial resolution were studied and resulting images were analyzed. Both parallel and conical beam have been investigated for simulated pRad acquisition. Then, experimental data of a pediatric head phantom (CIRS) were acquired using a recently completed experimental pCT scanner. Specific filters were applied on proton angle and energy loss data to remove proton histories that underwent nuclear interactions. The MTF10% (lp/mm) was used to evaluate and compare spatial resolution. Results: Numerical simulations showed improvement in the pRad spatial resolution for the parallel (2.75 to 6.71 lp/cm) and conical beam (3.08 to 5.83 lp/cm) reconstructed with the MLLSE compared to averaging detector pixel signals. For full tomographic reconstruction, the improved pRad were used as input into a simultaneous algebraic reconstruction algorithm. The Catphan pCT reconstruction based on the MLLSE-enhanced projection showed spatial resolution improvement for the parallel (2.83 to 5.86 lp/cm) and conical beam (3.03 to 5.15 lp/cm). The anthropomorphic head pCT displayed important contrast gains in high-gradient regions. Experimental results also demonstrated significant improvement in spatial resolution of the pediatric head radiography. Conclusion: The proposed MLLSE shows promising potential to increase the spatial resolution (up to 244%) in proton imaging.« less

A maximum likelihood method for high resolution proton radiography/proton CT.

PubMed

Collins-Fekete, Charles-Antoine; Brousmiche, Sébastien; Portillo, Stephen K N; Beaulieu, Luc; Seco, Joao

2016-12-07

Multiple Coulomb scattering (MCS) is the largest contributor to blurring in proton imaging. In this work, we developed a maximum likelihood least squares estimator that improves proton radiography's spatial resolution. The water equivalent thickness (WET) through projections defined from the source to the detector pixels were estimated such that they maximizes the likelihood of the energy loss of every proton crossing the volume. The length spent in each projection was calculated through the optimized cubic spline path estimate. The proton radiographies were produced using Geant4 simulations. Three phantoms were studied here: a slanted cube in a tank of water to measure 2D spatial resolution, a voxelized head phantom for clinical performance evaluation as well as a parametric Catphan phantom (CTP528) for 3D spatial resolution. Two proton beam configurations were used: a parallel and a conical beam. Proton beams of 200 and 330 MeV were simulated to acquire the radiography. Spatial resolution is increased from 2.44 lp cm -1 to 4.53 lp cm -1 in the 200 MeV beam and from 3.49 lp cm -1 to 5.76 lp cm -1 in the 330 MeV beam. Beam configurations do not affect the reconstructed spatial resolution as investigated between a radiography acquired with the parallel (3.49 lp cm -1 to 5.76 lp cm -1 ) or conical beam (from 3.49 lp cm -1 to 5.56 lp cm -1 ). The improved images were then used as input in a photon tomography algorithm. The proton CT reconstruction of the Catphan phantom shows high spatial resolution (from 2.79 to 5.55 lp cm -1 for the parallel beam and from 3.03 to 5.15 lp cm -1 for the conical beam) and the reconstruction of the head phantom, although qualitative, shows high contrast in the gradient region. The proposed formulation of the optimization demonstrates serious potential to increase the spatial resolution (up by 65[Formula: see text]) in proton radiography and greatly accelerate proton computed tomography reconstruction.

Spatial Classification of Orchards and Vineyards with High Spatial Resolution Panchromatic Imagery

DOE Office of Scientific and Technical Information (OSTI.GOV)

Warner, Timothy; Steinmaus, Karen L.

2005-02-01

New high resolution single spectral band imagery offers the capability to conduct image classifications based on spatial patterns in imagery. A classification algorithm based on autocorrelation patterns was developed to automatically extract orchards and vineyards from satellite imagery. The algorithm was tested on IKONOS imagery over Granger, WA, which resulted in a classification accuracy of 95%.