Sample records for walbaum pisces salmonidae

  1. Framing the Salmonidae Family Phylogenetic Portrait: A More Complete Picture from Increased Taxon Sampling

    PubMed Central

    Crête-Lafrenière, Alexis; Weir, Laura K.; Bernatchez, Louis

    2012-01-01

    Considerable research efforts have focused on elucidating the systematic relationships among salmonid fishes; an understanding of these patterns of relatedness will inform conservation- and fisheries-related issues, as well as provide a framework for investigating evolutionary mechanisms in the group. However, uncertainties persist in current Salmonidae phylogenies due to biological and methodological factors, and a comprehensive phylogeny including most representatives of the family could provide insight into the causes of these difficulties. Here we increase taxon sampling by including nearly all described salmonid species (n = 63) to present a time-calibrated and more complete portrait of Salmonidae using a combination of molecular markers and analytical techniques. This strategy improved resolution by increasing the signal-to-noise ratio and helped discriminate methodological and systematic errors from sources of difficulty associated with biological processes. Our results highlight novel aspects of salmonid evolution. First, we call into question the widely-accepted evolutionary relationships among sub-families and suggest that Thymallinae, rather than Coregoninae, is the sister group to the remainder of Salmonidae. Second, we find that some groups in Salmonidae are older than previously thought and that the mitochondrial rate of molecular divergence varies markedly among genes and clades. We estimate the age of the family to be 59.1 MY (CI: 63.2-58.1 MY) old, which likely corresponds to the timing of whole genome duplication in salmonids. The average, albeit highly variable, mitochondrial rate of molecular divergence was estimated as ∼0.31%/MY (CI: 0.27–0.36%/MY). Finally, we suggest that some species require taxonomic revision, including two monotypic genera, Stenodus and Salvethymus. In addition, we resolve some relationships that have been notoriously difficult to discern and present a clearer picture of the evolution of the group. Our findings

  2. PISCES: An environment for parallel scientific computation

    NASA Technical Reports Server (NTRS)

    Pratt, T. W.

    1985-01-01

    The parallel implementation of scientific computing environment (PISCES) is a project to provide high-level programming environments for parallel MIMD computers. Pisces 1, the first of these environments, is a FORTRAN 77 based environment which runs under the UNIX operating system. The Pisces 1 user programs in Pisces FORTRAN, an extension of FORTRAN 77 for parallel processing. The major emphasis in the Pisces 1 design is in providing a carefully specified virtual machine that defines the run-time environment within which Pisces FORTRAN programs are executed. Each implementation then provides the same virtual machine, regardless of differences in the underlying architecture. The design is intended to be portable to a variety of architectures. Currently Pisces 1 is implemented on a network of Apollo workstations and on a DEC VAX uniprocessor via simulation of the task level parallelism. An implementation for the Flexible Computing Corp. FLEX/32 is under construction. An introduction to the Pisces 1 virtual computer and the FORTRAN 77 extensions is presented. An example of an algorithm for the iterative solution of a system of equations is given. The most notable features of the design are the provision for several granularities of parallelism in programs and the provision of a window mechanism for distributed access to large arrays of data.

  3. Resolving the extended stellar halos of nearby galaxies: the wide-field PISCeS survey

    NASA Astrophysics Data System (ADS)

    Crnojevic, Denija; Sand, David; Spekkens, Kristine; Caldwell, Nelson; Guhathakurta, Puragra; McLeod, Brian; Seth, Anil; Simon, Joshua D.; Strader, Jay; Toloba, Elisa

    2018-01-01

    I will present results from the wide-field Panoramic Imaging Survey of Centaurus and Sculptor (PISCeS): the resolved stellar halos of two nearby galaxies (the spiral NGC253 and the elliptical Centaurus A, D~3.7 Mpc) are investigated out to a galactocentric radius of 150 kpc with Magellan/Megacam. The survey pushes the limits of near-field cosmology beyond the Local Group, by characterizing the stellar content (ages, metallicities, gradients) of extended halos and their substructures in two environments substantially different from the Local Group, i.e. the loose Sculptor group of galaxies and the Centaurus A group dominated by an elliptical. PISCeS has to date led to the discovery of 11 confirmed satellites as faint as M_V=-8 (including Ultra Diffuse Galaxies), streams and tidal substructures with surface brigthness limits as low as ~32 mag/arcsec^2, and hundreds of globular cluster/ultra-compact dwarf candidates. The unique strength of PISCeS is the exquisite synergy between the wide-field, ground-based survey and its extensive imaging and spectroscopic follow-up (HST, Keck, VLT, Magellan, AAT), which constitute the first accurate characterization of the past and ongoing accretion processes shaping the halos of these nearby galaxies. Our observational campaign will not only provide crucial constraints to quantitatively inform theoretical models of galaxy formation and evolution, but it also represents a necessary testbed in preparation for future very large datasets stemming from the next generation of ground-based (LSST, TMT, GMT) as well as space-borne (JWST, WFIRST) telescopes.

  4. PISCES

    EPA Pesticide Factsheets

    The Clean Water State Revolving Fund’s Performance and Innovation in the SRF Creating Environmental Success (PISCES) program allows state programs to gain national recognition for exceptional projects funded by the CWSRF.

  5. DISTRIBUTIONS OF LAKE FISHES OF THE NORTHEAST USA--III. SALMONIDAE AND ASSOCIATED COLDWATER SPECIES

    EPA Science Inventory

    We present distributional maps and discuss native status for fish species characteristic of coldwater lakes, sampled from 203 randomly selected lakes in the northeastern USA (New England, New York, New Jersey). Eleven coldwater fish species from four families (Salmonidae, Osmeri...

  6. PISCES 2 users manual

    NASA Technical Reports Server (NTRS)

    Pratt, Terrence W.

    1987-01-01

    PISCES 2 is a programming environment and set of extensions to Fortran 77 for parallel programming. It is intended to provide a basis for writing programs for scientific and engineering applications on parallel computers in a way that is relatively independent of the particular details of the underlying computer architecture. This user's manual provides a complete description of the PISCES 2 system as it is currently implemented on the 20 processor Flexible FLEX/32 at NASA Langley Research Center.

  7. Update on PISCES

    NASA Technical Reports Server (NTRS)

    Pearson, Don; Hamm, Dustin; Kubena, Brian; Weaver, Jonathan K.

    2010-01-01

    An updated version of the Platform Independent Software Components for the Exploration of Space (PISCES) software library is available. A previous version was reported in Library for Developing Spacecraft-Mission-Planning Software (MSC-22983), NASA Tech Briefs, Vol. 25, No. 7 (July 2001), page 52. To recapitulate: This software provides for Web-based, collaborative development of computer programs for planning trajectories and trajectory- related aspects of spacecraft-mission design. The library was built using state-of-the-art object-oriented concepts and software-development methodologies. The components of PISCES include Java-language application programs arranged in a hierarchy of classes that facilitates the reuse of the components. As its full name suggests, the PISCES library affords platform-independence: The Java language makes it possible to use the classes and application programs with a Java virtual machine, which is available in most Web-browser programs. Another advantage is expandability: Object orientation facilitates expansion of the library through creation of a new class. Improvements in the library since the previous version include development of orbital-maneuver- planning and rendezvous-launch-window application programs, enhancement of capabilities for propagation of orbits, and development of a desktop user interface.

  8. PISCES: An Integral Field Spectrograph Technology Demonstration for the WFIRST Coronagraph

    NASA Technical Reports Server (NTRS)

    McElwain, Michael W.; Mandell, Avi M.; Gong, Qian; Llop-Sayson, Jorge; Brandt, Timothy; Chambers, Victor J.; Grammer, Bryan; Greeley, Bradford; Hilton, George; Perrin, Marshall D.; hide

    2016-01-01

    We present the design, integration, and test of the Prototype Imaging Spectrograph for Coronagraphic Exoplanet Studies (PISCES) integral field spectrograph (IFS). The PISCES design meets the science requirements for the Wide-Field Infra Red Survey Telescope (WFIRST) Coronagraph Instrument (CGI). PISCES was integrated and tested in the integral field spectroscopy laboratory at NASA Goddard. In June 2016, PISCES was delivered to the Jet Propulsion Laboratory (JPL) where it was integrated with the Shaped Pupil Coronagraph (SPC) High Contrast Imaging Testbed (HCIT). The SPC/PISCES configuration will demonstrate high contrast integral field spectroscopy as part of the WFIRST CGI technology development program.

  9. PISCES: an integral field spectrograph technology demonstration for the WFIRST coronagraph

    NASA Astrophysics Data System (ADS)

    McElwain, Michael W.; Mandell, Avi M.; Gong, Qian; Llop-Sayson, Jorge; Brandt, Timothy; Chambers, Victor J.; Grammer, Bryan; Greeley, Bradford; Hilton, George; Perrin, Marshall D.; Stapelfeldt, Karl R.; Demers, Richard; Tang, Hong; Cady, Eric

    2016-07-01

    We present the design, integration, and test of the Prototype Imaging Spectrograph for Coronagraphic Exoplanet Studies (PISCES) integral field spectrograph (IFS). The PISCES design meets the science requirements for the Wide-Field InfraRed Survey Telescope (WFIRST) Coronagraph Instrument (CGI). PISCES was integrated and tested in the integral field spectroscopy laboratory at NASA Goddard. In June 2016, PISCES was delivered to the Jet Propulsion Laboratory (JPL) where it was integrated with the Shaped Pupil Coronagraph (SPC) High Contrast Imaging Testbed (HCIT). The SPC/PISCES configuration will demonstrate high contrast integral field spectroscopy as part of the WFIRST CGI technology development program.

  10. PisCES: Pis(cine) Community Estimation Software

    EPA Science Inventory

    PisCES predicts a fish community for any NHD-Plus stream reach in the conterminous United States. PisCES utilizes HUC-based distributional information for over 1,000 nature and non-native species obtained from NatureServe, the USGS, and Peterson Field Guide to Freshwater Fishes o...

  11. LiPISC: A Lightweight and Flexible Method for Privacy-Aware Intersection Set Computation.

    PubMed

    Ren, Wei; Huang, Shiyong; Ren, Yi; Choo, Kim-Kwang Raymond

    2016-01-01

    Privacy-aware intersection set computation (PISC) can be modeled as secure multi-party computation. The basic idea is to compute the intersection of input sets without leaking privacy. Furthermore, PISC should be sufficiently flexible to recommend approximate intersection items. In this paper, we reveal two previously unpublished attacks against PISC, which can be used to reveal and link one input set to another input set, resulting in privacy leakage. We coin these as Set Linkage Attack and Set Reveal Attack. We then present a lightweight and flexible PISC scheme (LiPISC) and prove its security (including against Set Linkage Attack and Set Reveal Attack).

  12. LiPISC: A Lightweight and Flexible Method for Privacy-Aware Intersection Set Computation

    PubMed Central

    Huang, Shiyong; Ren, Yi; Choo, Kim-Kwang Raymond

    2016-01-01

    Privacy-aware intersection set computation (PISC) can be modeled as secure multi-party computation. The basic idea is to compute the intersection of input sets without leaking privacy. Furthermore, PISC should be sufficiently flexible to recommend approximate intersection items. In this paper, we reveal two previously unpublished attacks against PISC, which can be used to reveal and link one input set to another input set, resulting in privacy leakage. We coin these as Set Linkage Attack and Set Reveal Attack. We then present a lightweight and flexible PISC scheme (LiPISC) and prove its security (including against Set Linkage Attack and Set Reveal Attack). PMID:27326763

  13. Prototype Imaging Spectrograph for Coronagraphic Exoplanet Studies (PISCES) for WFIRST/AFTA

    NASA Technical Reports Server (NTRS)

    Gong, Qian; Mcelwain, Michael; Greeley, Bradford; Grammer, Bryan; Marx, Catherine; Memarsadeghi, Nargess; Stapelfeldt, Karl; Hilton, George; Sayson, Jorge Llop; Perrin, Marshall; hide

    2015-01-01

    Prototype Imaging Spectrograph for Coronagraphic Exoplanet Studies (PISCES) is a lenslet array based integral field spectrometer (IFS) designed for high contrast imaging of extrasolar planets. PISCES will be used to advance the technology readiness of the high contrast IFS baselined on the Wide-Field InfraRed Survey Telescope/Astrophysics Focused Telescope Assets (WFIRST/AFTA) coronagraph instrument. PISCES will be integrated into the high contrast imaging testbed (HCIT) at the Jet Propulsion Laboratory and will work with both the Hybrid Lyot Coronagraph (HLC) and the Shaped Pupil Coronagraph (SPC) cofigurations. We discuss why the lenslet array based IFS is selected for PISCES. We present the PISCES optical design, including the similarities and differences of lenslet based IFSs to normal spectrometers, the trade-off between a refractive design and reflective design, as well as the specific function of our pinhole mask on the back surface of the lenslet array to further suppress star light introduced speckles. The optical analysis, alignment plan, and mechanical design of the instrument will be discussed.

  14. Prototype Imaging Spectrograph for Coronagraphic Exoplanet Studies (PISCES) for WFIRST-AFTA

    NASA Technical Reports Server (NTRS)

    Gong, Qian; Mcelwain, Michael; Greeley, Bradford; Grammer, Bryan; Marx, Catherine; Memarsadeghi, Nargess; Stapelfeldt, Karl; Hilton, George; Sayson, Jorge Llop; Perrin, Marshall; hide

    2015-01-01

    Prototype Imaging Spectrograph for Coronagraphic Exoplanet Studies (PISCES) is a lenslet array based integral field spectrometer (IFS) designed for high contrast imaging of extrasolar planets. PISCES will be used to advance the technology readiness of the high contrast IFS baselined on the Wide-Field InfraRed Survey Telescope/Astrophysics Focused Telescope Assets (WFIRST-AFTA) coronagraph instrument. PISCES will be integrated into the high contrast imaging testbed (HCIT) at the Jet Propulsion Laboratory (JPL) and will work with both the Hybrid Lyot Coronagraph (HLC) and the Shaped Pupil Coronagraph (SPC) configurations. We discuss why the lenslet array based IFS was selected for PISCES. We present the PISCES optical design, including the similarities and differences of lenslet based IFSs to normal spectrometers, the trade-off between a refractive design and reflective design, as well as the specific function of our pinhole mask on the back surface of the lenslet array to reduce the diffraction from the edge of the lenslets. The optical analysis, alignment plan, and mechanical design of the instrument will be discussed.

  15. Methods for design and evaluation of parallel computating systems (The PISCES project)

    NASA Technical Reports Server (NTRS)

    Pratt, Terrence W.; Wise, Robert; Haught, Mary JO

    1989-01-01

    The PISCES project started in 1984 under the sponsorship of the NASA Computational Structural Mechanics (CSM) program. A PISCES 1 programming environment and parallel FORTRAN were implemented in 1984 for the DEC VAX (using UNIX processes to simulate parallel processes). This system was used for experimentation with parallel programs for scientific applications and AI (dynamic scene analysis) applications. PISCES 1 was ported to a network of Apollo workstations by N. Fitzgerald.

  16. Prototype Imaging Spectrograph for Coronagraphic Exoplanet Studies (PISCES) for WFIRST/AFTA

    NASA Technical Reports Server (NTRS)

    Gong, Qian; McElwain, Michael; Greeley, Bradford; Grammer, Bryan; Marx, Catherine; Memarsadeghi, Nargess; Hilton, George; Perrin, Marshall; Sayson, Llop; Domingo, Jorge; hide

    2015-01-01

    Prototype Imaging Spectrograph for Coronagraphic Exoplanet Studies (PISCES) is a prototype lenslet array based integral field spectrometer (IFS) designed for high contrast imaging of extrasolar planets. PISCES will be used to advance the technology readiness of the high contrast IFS baselined on the Wide-Field InfraRed Survey TelescopeAstrophysics Focused Telescope Assets (WFIRSTAFTA) coronagraph instrument. PISCES will be integrated into the high contrast imaging testbed (HCIT) at the Jet Propulsion Laboratory and will work with both the Hybrid Lyot Coronagraph (HLC) and the Shaped Pupil Coronagraph (SPC). We will present the PISCES optical design, including the similarities and differences of lenslet based IFSs to normal spectrometers, the trade-off between a refractive design and reflective design, as well as the compatibility to upgrade from the current 1k x 1k detector array to 4k x 4k detector array. The optical analysis, alignment plan, and mechanical design of the instrument will be discussed.

  17. CWSRF 2017 PISCES Recognition Program Compendium

    EPA Pesticide Factsheets

    The Clean Water State Revolving Fund’s Performance and Innovation in the SRF Creating Environmental Success (PISCES) program allows assistance recipients to gain national recognition for exceptional projects funded by the CWSRF.

  18. Arecibo Pisces-Perseus Supercluster Survey: Declination Strip 25

    NASA Astrophysics Data System (ADS)

    Agostino, James; Harrison, Matthew F.; Finn, Rose, Dr.; APPSS Team, Undergraduate ALFALFA Team, ALFALFA Team

    2018-01-01

    The Arecibo Pisces-Perseus Supercluster Survey (APPSS) is an observing project by the Undergraduate ALFALFA Team, aimed at determining the mass of the Pisces Perseus Supercluster through measurement of peculiar velocities from HI line detections. The survey targeted approximately 600 galaxies selected based on SDSS and GALEX photometry as likely to contain HI. We reduced Arecibo L-Band Wide observations for 90 galaxies near declination 25 degrees, 40 of which showed HI emission. 58% of those 40 galaxies were below 10,000 km/s recession velocity and thus will provide useful information to draw conclusions from. We determined the recession velocity, velocity width, and HI line flux for each detection. We discuss our results for APPSS galaxies and for ALFALFA detections near this declination strip. By combining results from all strips, APPSS will determine which galaxies are associated with the Pisces-Perseus Supercluster, and their peculiar velocities will be measured via the baryonic Tully-Fisher relation. This work has been supported by NSF grants AST-1211005 and AST-1637339.

  19. Resolving the extended stellar haloes of nearby galaxies: the wide-field PISCeS survey

    NASA Astrophysics Data System (ADS)

    Crnojevic, Denija; Sand, David J.; Caldwell, Nelson; Guhathakurta, Puragra; McLeod, Brian A.; Seth, Anil; Simon, Joshua D.; Strader, Jay; Toloba, Elisa

    2015-08-01

    I will present results from the wide-field Panoramic Imaging Survey of Centaurus and Sculptor (PISCeS): we investigate the resolved stellar haloes of two nearby galaxies (the spiral NGC253 and the elliptical Centaurus A, D~3.7 Mpc) out to a galactocentric radius of 150 kpc with Magellan/Megacam. The survey led to the discovery of ~20 faint satellites and stunning streams/substructures in two environments substantially different from the Local Group, i.e. the loose Sculptor group of galaxies and the Centaurus A group dominated by an elliptical. These discoveries clearly testify the past and ongoing accretion processes shaping the haloes of these nearby galaxies, and provide the first complete census of their satellite systems down to an unprecedented M_V<-8. This effectively enables the first direct comparison of external galaxies' resolved haloes to the PAndAS survey. The detailed characterization of the stellar content, shape and gradients in the extended haloes of NGC253, Centaurus A and in their satellites represent crucial constraints to theoretical models of galaxy formation and evolution.

  20. The Arecibo Pisces-Perseus Supercluster Survey: Declination strip 23

    NASA Astrophysics Data System (ADS)

    Luna, Omar; Craig, David; Jones, Michael G.; Koopmann, Rebecca A.; Haynes, Martha P.; APPS Team, Undergraduate ALFALFA Team, ALFALFA Team

    2018-01-01

    We report on results of the Arecibo Pisces-Perseus Supercluster Survey (APPSS) along and near declination 23 degrees. APPSS is a targeted HI survey using the L-band wide receiever at the NAIC Arecibo observatory. It is designed to detect infall onto the Pisces-Perseus Supercluster (PPS) using a statistical comparison to models of the peculiar velocity flow field. We have investigated a subset of 67 galaxies in the PPS sky region along declination 23 degrees. For detected galaxies we have determined their systemic velocity, line width, integrated flux density, and HI mass. We will illustrate HI spectral properties of interesting detections in our region and will compare them with available optical and UV data from SDSS and the GALEX archives. We will also describe the data reduction process and the ongoing collaboration among faculty and undergraduate students of the Undergraduate ALFALFA Team.

  1. Spectroscopic Confirmation of the Dwarf Galaxies Hydra II and Pisces II and the Globular Cluster Laevens 1

    NASA Astrophysics Data System (ADS)

    Kirby, Evan N.; Simon, Joshua D.; Cohen, Judith G.

    2015-09-01

    We present Keck/DEIMOS spectroscopy of stars in the recently discovered Milky Way satellites Hydra II, Pisces II, and Laevens 1. We measured a velocity dispersion of {5.4}-2.4+3.6 km s-1 for Pisces II, but we did not resolve the velocity dispersions of Hydra II or Laevens 1. We marginally resolved the metallicity dispersions of Hydra II and Pisces II but not Laevens 1. Furthermore, Hydra II and Pisces II obey the luminosity-metallicity relation for Milky Way dwarf galaxies (< [{Fe}/{{H}}]> =-2.02+/- 0.08 and -2.45+/- 0.07, respectively), whereas Laevens 1 does not (< [{Fe}/{{H}}]> =-1.68+/- 0.05). The kinematic and chemical properties suggest that Hydra II and Pisces II are dwarf galaxies, and Laevens 1 is a globular cluster. We determined that two of the previously observed blue stars near the center of Laevens 1 are not members of the cluster. A third blue star has ambiguous membership. Hydra II has a radial velocity < {v}{helio}> =303.1+/- 1.4 km s-1, similar to the leading arm of the Magellanic stream. The mass-to-light ratio for Pisces II is {370}-240+310 {M}⊙ /{L}⊙ . It is not among the most dark matter-dominated dwarf galaxies, but it is still worthy of inclusion in the search for gamma-rays from dark matter self-annihilation. The data presented herein were obtained at the W.M. Keck Observatory, which is operated as a scientific partnership among the California Institute of Technology, the University of California and the National Aeronautics and Space Administration. The Observatory was made possible by the generous financial support of the W.M. Keck Foundation.

  2. PISCES: A "Stepping Stone" to International Space Exploration and Development

    NASA Technical Reports Server (NTRS)

    Howell, Joe T.; Henley, Mark W.; Schowengerdt, Frank

    2007-01-01

    The Pacific International Space Center for Exploration Systems (PISCES) was initiated by the Japan/US Science, Technology and Space Application Programs (JUSTSAP) to advance research and education in space exploration technology and systems working closely with the State of Hawaii. Hawaii has a heritage with space exploration including the training of Apollo astronauts and testing of lunar rover systems in some of the most realistic terrestrial sites available. The high altitude dry environment with greater solar insolation, and the dry lunar regolith-like volcanic ash and cratered terrain make Hawaiian sites ideal to support, international space exploration technology development, demonstration, education and training. This paper will summarize development and roles of PISCES in lunar surface analogs, simulations, technology demonstrations, research and training for space exploration technology and systems.

  3. Comparative precision of age estimates from two southern reservoir populations of paddlefish [Polyodon spathula (Walbaum, 1792)

    USGS Publications Warehouse

    Long, James M.; Nealis, Ashley

    2017-01-01

    The aim of the study was to determine whether location and sex affected the age precision estimates between two southern, reservoir populations of paddlefish [Polyodon spathula (Walbaum, 1792)]. From 589 paddlefish collected in Grand Lake and Keystone Lake, Oklahoma in 2011, ages from dentaries were estimated using three independent readers and precision was compared with coefficient of variation between locations and sexes. Ages were more precisely estimated from Grand Lake and from females.

  4. The PISCES Project: How Teacher-Scientist Partners can Enhance Elementary Science Instruction

    NASA Astrophysics Data System (ADS)

    Reif, C.; Oechel, W.

    2003-12-01

    The PISCES Project (Partnerships Involving the Scientific Community in Elementary Schools www.sdsa.org/pisces) is an innovative program that brings high quality standards-based elementary science curriculum and hands-on laboratory materials into San Diego County's classrooms. The project is funded by the NSF Graduate Teaching Fellows in K-12 Education (GK-12) program. The project was designed and is administered through cooperation among faculty at San Diego State University and the Science Department of the San Diego County Office of Education. Undergraduate and graduate students enrolled in science programs in San Diego area universities including San Diego State University, California State University San Marcos, and University of California San Diego partner with elementary school teachers. Through this partnership, the scientist brings scientific expertise to the classroom while the teacher delivers the lesson using current pedagogic methods. This is accomplished during a 3 month partnership in which the scientist joins the teacher in the classroom a few days each week to complete professional kit-based curriculum such as that available from FOSS (Full Option Science System) and STC (Science and Technology for Children). The teachers remain in the program for two years during which they have continuous access to the kit-based curriculum as well as two to three partnership cycles. Teachers receive assistance outside of the classroom as well attending professional development institutes three times a year to establish and maintain effective science teaching methods. The San Diego Science Alliance and other community and industry supporters provide the additionalfunding necessary to provide this teacher professional development Currenty, PISCES is present in over 40 schools and is able to provide partnerships to over 100 classrooms each year. In addition to the work done in San Diego, the project has expanded to Barrow, Alaska with plans to expand to La Paz

  5. PISCES High Contrast Integral Field Spectrograph Simulations and Data Reduction Pipeline

    NASA Technical Reports Server (NTRS)

    Llop Sayson, Jorge Domingo; Memarsadeghi, Nargess; McElwain, Michael W.; Gong, Qian; Perrin, Marshall; Brandt, Timothy; Grammer, Bryan; Greeley, Bradford; Hilton, George; Marx, Catherine

    2015-01-01

    The PISCES (Prototype Imaging Spectrograph for Coronagraphic Exoplanet Studies) is a lenslet array based integral field spectrograph (IFS) designed to advance the technology readiness of the WFIRST (Wide Field Infrared Survey Telescope)-AFTA (Astrophysics Focused Telescope Assets) high contrast Coronagraph Instrument. We present the end to end optical simulator and plans for the data reduction pipeline (DRP). The optical simulator was created with a combination of the IDL (Interactive Data Language)-based PROPER (optical propagation) library and Zemax (a MatLab script), while the data reduction pipeline is a modified version of the Gemini Planet Imager's (GPI) IDL pipeline. The simulations of the propagation of light through the instrument are based on Fourier transform algorithms. The DRP enables transformation of the PISCES IFS data to calibrated spectral data cubes.

  6. The Arecibo Pisces-Perseus Supercluster Survey: Declination Strip 35

    NASA Astrophysics Data System (ADS)

    McMichael, Chelsey; Ribaudo, Joseph; Koopmann, Rebecca A.; Haynes, Martha P.; APPSS Team, Undergraduate ALFALFA Team, and ALFALFA Team

    2018-01-01

    The Arecibo Pisces-Perseus Supercluster Survey (APPSS) will provide strong observational constraints on the mass-infall rate onto the main filament of the Pisces-Perseus Supercluster. The survey data consist of HI emission-line spectra of cluster galaxy candidates, obtained primarily at the Arecibo Observatory (with ALFA as part of the ALFALFA Survey and with the L-Band Wide receiver as part of APPSS observations). Here we present the details of the data reduction process and spectral-analysis techniques used to determine if a galaxy candidate is at a velocity consistent with the Supercluster, as well as the detected HI-flux and rotational velocity of the galaxy, which will be used to estimate the corresponding HI-mass. We discuss the results of a preliminary analysis on a subset of the APPSS sample, corresponding to 98 galaxies located within ~1.5° of DEC = +35.0°, with 65 possible detections. We also highlight several interesting emission-line features and galaxies discovered during the reduction and analysis process and layout the future of the APPSS project. This work has been supported by NSF grants AST-1211005 and AST-1637339.

  7. [Divergence of paralogous growth-hormone-encoding genes and their promoters in Salmonidae].

    PubMed

    Kamenskaya, D N; Pankova, M V; Atopkin, D M; Brykov, V A

    2017-01-01

    In many fish species, including salmonids, the growth-hormone is encoded by two duplicated paralogous genes, gh1 and gh2. Both genes were already in place at the time of divergence of species in this group. A comparison of the entire sequence of these genes of salmonids has shown that their conserved regions are associated with exons, while their most variable regions correspond to introns. Introns C and D include putative regulatory elements (sites Pit-1, CRE, and ERE), that are also conserved. In chars, the degree of polymorphism of gh2 gene is 2-3 times as large as that in gh1 gene. However, a comparison across all Salmonidae species would not extent this observation to other species. In both these chars' genes, the promoters are conserved mainly because they correspond to putative regulatory sequences (TATA box, binding sites for the pituitary transcription factor Pit-1 (F1-F4), CRE, GRE and RAR/RXR elements). The promoter of gh2 gene has a greater degree of polymorphism compared with gh1 gene promoter in all investigated species of salmonids. The observed differences in the rates of accumulation of changes in growth hormone encoding paralogs could be explained by differences in the intensity of selection.

  8. The Arecibo Pisces Perseus Supercluster Survey: Declination Strip 27

    NASA Astrophysics Data System (ADS)

    Ricci, Mariah; Miller, Brendan; APPSS Team; Undergraduate ALFALFA Team; ALFALFA Team

    2018-01-01

    The Arecibo Pisces Perseus Supercluster Survey (APPSS) is an HI survey measuring galaxy infall into the filament and clusters. Galaxies were selected for HI observations based on their location within the Pisces Perseus supercluster and SDSS and GALEX colors predictive of cold gas content. Most of the HI observations were conducted at Arecibo using the L Band Wide receiver, with some high-declination coverage provided by Green Bank. The observations provide increased sensitivity compared to ALFALFA blind survey data. For this project, we investigated a subset of 132 APPSS galaxies with declinations near 27 degrees. Using custom data reduction and analysis tools developed for the Undergraduate ALFALFA Team, we determined the following information for galaxies in our subset: systemic velocity, line width, integrated flux density, HI mass, and gas fraction (or corresponding limits for non-detections). We calculate our HI detection fraction and mean gas fraction as a function of stellar mass and compare to previous results. We investigate the distribution of systemic velocities for our galaxies with their location on the sky. Finally, we discuss several interesting sources from our subset of APPSS galaxies. This work has been supported by NSF grants AST-1211005, AST-1637299, and AST-1637339

  9. Initial HI results from the Arecibo Pisces-Perseus Supercluster Survey

    NASA Astrophysics Data System (ADS)

    Craig, David W.; Davis, Cory; Johnson, Cory; Koopmann, Rebecca A.; Jones, Michael G.; Hallenbeck, Gregory L.; O'Donoghue, Aileen A.; Haynes, Martha P.; Giovanelli, Riccardo; Rosenberg, Jessica L.; Venkatesan, Aparna; Undergraduate ALFALFA Team

    2017-01-01

    The Arecibo Pisces-Perseus Supercluster Survey is a targeted HI survey of galaxies that began its second observing season in October 2016. The survey is conducted by members of the Undergraduate ALFALFA Team (UAT) and extensively involves undergraduates in observations, data reduction, and analysis. It aims to complement the HI sources identified by the ALFALFA extragalactic HI line survey by probing deeper in HI mass (to lower masses) than the legacy survey itself. Measurements of the HI line velocity widths will be combined with uniform processing of images obtained in the SDSS and GALEX public databases to localize the sample within the baryonic Tully Fisher relation, allowing estimates of their redshift-independent distances and thus their peculiar velocities.The survey is designed to constrain Pisces-Perseus Supercluster infall models by producing 5-σ detections of infall velocities to a precision of about 500 km/s. By targeting galaxies based on SDSS and GALEX photometry, we have achieved detection rates of 68% of the galaxies in our sample. We will discuss the target selection process, HI velocities and mass estimates from the 2015 fall observing season, preliminary results from 2016 observations, and preliminary comparisons with inflow models predicted by numerical simulations.This work has been supported by NSF grants AST-1211005, AST-1637339, AST-1637262.

  10. Preliminary results on the Arecibo Pisces-Perseus Supercluster Survey

    NASA Astrophysics Data System (ADS)

    Cortes, Rosemary; Lebron, Mayra; Jones, Michael G.; Koopmann, Rebecca A.; Haynes, Martha P.; APPSS Team, Undergraduate ALFALFA Team, and the ALFALFA Team

    2018-01-01

    The Arecibo Pisces-Perseus Supercluster Survey (APPSS) aims to exploit the Baryonic Tully-Fisher Relation to derive distances and peculiar velocities of galaxies in and near the main ridge of the Pisces-Perseus Supercluster (PPS), one of the most prominent features of the Cosmic Web in the nearby Universe. The sample of galaxies contains ~ 600 sources in the low-mass range (8 < log MHI / M⊙ < 9). The source selection was based on the ALFALFA HI survey, SDSS and GALEX photometric data. The sample galaxies have HI masses just below the ALFALFA detection threshold, and were selected to be blue disk systems (low surface brightness sources from optical photometry data). The HI data were obtained at the Arecibo Observatory between the years 2015 and 2016. With this sample, the nature of the galaxy population in and around the PPS will be investigated. The HIMF to log MHI ~ 8.0 along the PPS filament will be measured and using the Tully-Fisher relation it will be possible to make a robust measurement of the infall and backflow onto the filamentary structure.APPSS is collaborative project between more than 10 Undergraduate ALFALFA Team institutions in which each group contributes to the analysis of a subset of the HI PPS data. In this poster, we will present the contributions of the U.P.R. team to the APPSS project. We will show the procedure used for the Arecibo HI data analysis, including some examples, and will show our preliminary results.

  11. Oxidative stress in juvenile chinook salmon, Oncorhynchus tshawytscha (Walbaum)

    USGS Publications Warehouse

    Welker, T.L.; Congleton, J.L.

    2004-01-01

    Juvenile chinook salmon, Oncorhynchus tshawytscha (Walbaum), were held in 8-11??C freshwater, starved for 3 days and subjected to a low-water stressor to determine the relationship between the general stress response and oxidative stress. Lipid peroxidation (LPO) levels (lipid hydroperoxides) were measured in kidney, liver and brain samples taken at the beginning of the experiment (0-h unstressed controls) and at 6, 24 and 48 h after application of a continuous low-water stressor. Tissue samples were also taken at 48 h from fish that had not been exposed to the stressor (48-h unstressed controls). Exposure to the low-water stressor affected LPO in kidney and brain tissues. In kidney, LPO decreased 6 h after imposition of the stressor; similar but less pronounced decreases also occurred in the liver and brain. At 48 h, LPO increased (in comparison with 6-h stressed tissues) in the kidney and brain. In comparison with 48-h unstressed controls, LPO levels were higher in the kidney and brain of stressed fish. Although preliminary, results suggest that stress can cause oxidative tissue damage in juvenile chinook salmon. Measures of oxidative stress have shown similar responses to stress in mammals; however, further research is needed to determine the extent of the stress-oxidative stress relationship and the underlying physiological mechanisms in fish.

  12. PiSCES: Pi(scine) stream community estimation software: A tool for nationwide fish assemblage predictions

    EPA Science Inventory

    Background/Question/Methods What species of fish might someone find in a local stream? How might that community change as a result of changes to characteristics of the stream and its watershed? PiSCES is a browser-based toolkit developed to predict a fish community for any NHD-Pl...

  13. Feeding habits of the bluemouth, Helicolenus dactylopterus dactylopterus (Delaroche, 1809) (Pisces: Sebastidae) in the Portuguese coast

    NASA Astrophysics Data System (ADS)

    Neves, Ana; Sequeira, Vera; Paiva, Rafaela Barros; Vieira, Ana Rita; Gordo, Leonel Serrano

    2012-06-01

    In order to investigate the feeding habits of Helicolenus dactylopterus dactylopterus along the continental Portuguese coast, a total of 619 individuals were sampled of which 60% contained food in their stomach and 35% had more than one prey item. Among the 81 prey items that were identified in the stomachs, benthic and benthopelagic prey prevail on this species diet. Acantephyra sp, Pasiphaea sp, mysidacea, and teleostei n.i. were the prey with the higher percent index of relative importance (%IRI) value. Three length groups (5-20 cm, 21-27 cm, and 28-48 cm) were defined through cluster analysis of the mean abundance of prey items. A permutational MANOVA detected significant differences in the diet and stomach fullness index for TLG, season, and maturation stage. Smaller fishes had a generalized diet, feeding mainly on mysidacea changing their diet above 20 cm TL, where a major consumption of natantia was found. The larger individuals, >28 cm TL, present a less generalized diet with pisces as dominant prey group. Seasonally, natantia and pisces were the principal prey groups during spring and winter, respectively, while mysidacea and other crustaceans were predominant during the rest of the year. Mysidacea were also the main prey group for immature individuals while natantia and pisces were the principal prey groups to the other maturity stages. The results of this study indicate that H. d. dactylopterus has a diverse diet focused on small crustaceans such as misyds and as specimens grow shrimps and fishes become more consumed, with larger specimens having a more specialized diet. The different nutritional needs during spawning season also seemed to influence the feeding habits of H. d. dactylopterus.

  14. The Arecibo Pisces-Perseus Survey: An Undergraduate ALFALFA Team Project

    NASA Astrophysics Data System (ADS)

    O'Donoghue, Aileen A.; Koopmann, Rebecca A.; Haynes, Martha P.; Jones, Michael; Craig, David; Hallenbeck, Gregory L.; Rosenberg, Jessica L.; Venkatesan, Aparna; Undergraduate ALFALFA Team

    2016-01-01

    The Milky Way's position in an outer filament of Lanieakea affords us a striking view of the Pisces-Perseus Supercluster (PPS) arcing roughly from 22h to 4h and 0° to +50° concentrated between cz = 4,000 km/s and cz = 8,000 km/s as a "wall" parallel to the plane of the sky. It is bounded by voids both between Laniakea and PPS and beyond PPS. Within this box, the 70% ALFALFA survey has detected 4,800 galaxies within cz = 8,000 km/s. Of these, 80% have masses greater than 108 M⊙. At the distance of the PPS, galaxies with MHI ≤ 108 M⊙ are below the ALFALFA detection limit. Thus to further explore this rich diversity of galaxy environments and the adjoining voids, the Undergraduate ALFALFA Team is in the process of using the L-band Wide receiver at Arecibo Observatory for the Arecibo Pisces-Perseus Supercluster Survey (APPSS). We will observe galaxies with 108 M⊙ ≤ MHI ≤ 109 M⊙ chosen from the SDSS DR12 and GALEX catalogs. We are limiting our observations to the PPS ridge in 21h 30m to 3h 15m and 23° to 35°. Since this region lacks SDSS spectroscopy, targets have been selected using photometric criteria derived from SDSS and GALEX observations for galaxies detected by ALFALFA. The results of these observations will allow us to constrain the HI mass function along the PPS ridge. Application of the Tully-Fisher relation will allow a robust measure of the infall velocities of galaxies into the filament. This work has been supported by NSF grant AST-1211005.

  15. Sphaerospora elwhaiensis sp.n. (Myxosporea: Sphaerosporidae) from landlocked sockeye salmon Oncorhynchus nerka (Salmoniformes: Salmonidae) in Washington State, USA.

    PubMed

    Jones, Simon; Fiala, Ivan; Prosperi-Porta, Gina; House, Marcia; Mumford, Sonia

    2011-06-01

    A new species of sphaerosporid myxosporean, Sphaerospora elwhaiensis sp. n., is described from kidney of non-anadromous sockeye salmon (kokanee) Oncorhynchus nerka (Walbaum) from Lake Sutherland in the northern Olympic Peninsula, Washington, USA. Infection with the parasite was detected in 45% of 177 kokanee examined over 5 years. While conforming to the morphological criteria by which members of the genus are defined, the parasite is distinguished from congeners in salmonids of western North America by a unique combination of valvular sculpting of the myxospore, the relatively large size of the myxospore and monosporous development within the pseudoplasmodium. In addition, nucleotide sequences of the parasite's small and large subunit ribosomal RNA gene are unique. Phylogenetic analyses of these sequences suggested that the parasite is most closely related to freshwater Myxidium spp. and Zschokkella spp. The molecular data have provided further evidence for a polyphyletic association previously recognized among members of the genus and emphasize the need for a taxonomic revision of Sphaerospora Thélohan, 1892 and related genera.

  16. Effect of loading density of sockeye salmon, Oncorhynchus nerka (Walbaum), eggs in incubation boxes on mortality caused by infectious haematopoietic necrosis

    USGS Publications Warehouse

    Mulcahy, D.; Bauersfeld, K.

    1983-01-01

    Infectious haematopoietic necrosis (IHN) can cause massive mortalities of sockeye salmon, Oncorhynchus nerka (Walbaum), cultured in hatcheries. One method of enhancing sockeye salmon populations is to use a streamside egg incubation box from which the fry are automatically released into the stream as they emerge from the gravel. In this system, however, IHN epizootics occur as the fry emerge and continue for up to two months after the fry leave the box (Mulcahy, unpublished data). In as much as the high density of eggs and alevins in incubation boxes might be conducive to the fulmination of an IHN epizootic, we varied the egg density in incubation boxes and studied the cffect on mortality caused by IHN.

  17. Pisces did not have increased heart failure: data-driven comparisons of binary proportions between levels of a categorical variable can result in incorrect statistical significance levels.

    PubMed

    Austin, Peter C; Goldwasser, Meredith A

    2008-03-01

    We examined the impact on statistical inference when a chi(2) test is used to compare the proportion of successes in the level of a categorical variable that has the highest observed proportion of successes with the proportion of successes in all other levels of the categorical variable combined. Monte Carlo simulations and a case study examining the association between astrological sign and hospitalization for heart failure. A standard chi(2) test results in an inflation of the type I error rate, with the type I error rate increasing as the number of levels of the categorical variable increases. Using a standard chi(2) test, the hospitalization rate for Pisces was statistically significantly different from that of the other 11 astrological signs combined (P=0.026). After accounting for the fact that the selection of Pisces was based on it having the highest observed proportion of heart failure hospitalizations, subjects born under the sign of Pisces no longer had a significantly higher rate of heart failure hospitalization compared to the other residents of Ontario (P=0.152). Post hoc comparisons of the proportions of successes across different levels of a categorical variable can result in incorrect inferences.

  18. Puffy skin disease (PSD) in rainbow trout, Oncorhynchus mykiss (Walbaum): a case definition.

    PubMed

    Maddocks, C E; Nolan, E T; Feist, S W; Crumlish, M; Richards, R H; Williams, C F

    2015-07-01

    Puffy skin disease (PSD) is a disease that causes skin pathology in rainbow trout, Oncorhynchus mykiss (Walbaum). Incidence of PSD in UK fish farms and fisheries has increased sharply in the last decade, with growing concern from both industry sectors. This paper provides the first comprehensive case definition of PSD, combining clinical and pathological observations of diseased rainbow trout from both fish farms and fisheries. The defining features of PSD, as summarized in the case definition, were focal lateral flank skin lesions that appeared as cutaneous swelling with pigment loss and petechiae. These were associated with lethargy, poor body condition, inappetance and low level mortality. Epidermal hyperplasia and spongiosis, oedema of the dermis stratum spongiosum and a mild diffuse inflammatory cellularity were typical in histopathology of skin. A specific pathogen or aetiology was not identified. Prevalence and severity of skin lesions was greatest during late summer and autumn, with the highest prevalence being 95%. Atypical lesions seen in winter and spring were suggestive of clinical resolution. PSD holds important implications for both trout aquaculture and still water trout fisheries. This case definition will aid future diagnosis, help avoid confusion with other skin conditions and promote prompt and consistent reporting. © 2014 John Wiley & Sons Ltd.

  19. An Overview of Recent PISCES Program PMI Results

    NASA Astrophysics Data System (ADS)

    Tynan, George; Doerner, Russell; Abe, Shota; Baldwin, Matthew; Barton, Joseph; Chen, Renkun; Gosselin, Jordan; Hollmann, Eric; Nishijima, Daisuke; Simmonds, Michael; Wang, Yong; Yu, Jonathan

    2015-11-01

    The PISCES Program is focused on fundamental PMI studies of Be and W-based solid plasma facing components under steady-state and transient conditions. We will show results from studies in W, Be and mixed W-Be material systems. Topics of investigation include formation of near-surface nanobubbles from He plasma ion implantation, growth of W-fuzz from these bubbles in steady-state and transient conditions, D retention in Be and W and development of a D-retention model for both H/D isotope exchange and displacement damage experiments. Initial studies of PMI in displacement damaged W are also presented, showing the effect of damage and exposure temperature on D retention, D diffusion, W thermal conductivity. Be-based results include morphology evolution under high plasma flux exposure, Be erosion mechanisms, and retention in Be-based materials. Future plans and connections to fusion energy system requirements will be discussed. This work supported by grant DE-FG02-07ER54912.

  20. Bacterial infections of Chinook salmon, Oncorhynchus tshawytscha (Walbaum), returning to gamete collecting weirs in Michigan.

    PubMed

    Loch, T P; Scribner, K; Tempelman, R; Whelan, G; Faisal, M

    2012-01-01

    Herein, we describe the prevalence of bacterial infections in Chinook salmon, Oncorhynchus tshawytscha (Walbaum), returning to spawn in two tributaries within the Lake Michigan watershed. Ten bacterial genera, including Renibacterium, Aeromonas, Carnobacterium, Serratia, Proteus, Pseudomonas, Hafnia, Salmonella, Shewanella and Morganella, were detected in the kidneys of Chinook salmon (n = 480) using culture, serological and molecular analyses. Among these, Aeromonas salmonicida was detected at a prevalence of ∼15%. Analyses revealed significant interactions between location/time of collection and gender for these infections, whereby overall infection prevalence increased greatly later in the spawning run and was significantly higher in females. Renibacterium salmoninarum was detected in fish kidneys at an overall prevalence of >25%. Logistic regression analyses revealed that R. salmoninarum prevalence differed significantly by location/time of collection and gender, with a higher likelihood of infection later in the spawning season and in females vs. males. Chi-square analyses quantifying non-independence of infection by multiple pathogens revealed a significant association between R. salmoninarum and motile aeromonad infections. Additionally, greater numbers of fish were found to be co-infected by multiple bacterial species than would be expected by chance alone. The findings of this study suggest a potential synergism between bacteria infecting spawning Chinook salmon. © 2011 Blackwell Publishing Ltd.

  1. Use of lupin, Lupinus perennis, mango, Mangifera indica, and stinging nettle, Urtica dioica, as feed additives to prevent Aeromonas hydrophila infection in rainbow trout, Oncorhynchus mykiss (Walbaum).

    PubMed

    Awad, E; Austin, B

    2010-05-01

    Feeding rainbow trout, Oncorhynchus mykiss (Walbaum), with 1% lupin, Lupinus perennis, mango, Mangifera indica, or stinging nettle, Urtica dioica, for 14 days led to reductions in mortality after challenge with Aeromonas hydrophila. In addition, there was significant enhancement in serum bactericidal activity, respiratory burst and lysozyme activity in the treatment groups compared to the controls. Use of lupin and mango led to the highest number of red blood and white blood cells in recipient fish, with use of stinging nettle leading to the highest haematocrit and haemoglobin values; the highest value of mean corpuscular volume and haemoglobin was in the control groups and those fed with stinging nettle.

  2. Structural studies of haemoglobin from pisces species shortfin mako shark (Isurus oxyrinchus) at 1.9 Å resolution.

    PubMed

    Ramesh, Pandian; Sundaresan, S S; Sathya Moorthy, Pon; Balasubramanian, M; Ponnuswamy, M N

    2013-11-01

    Haemoglobin (Hb) is a tetrameric iron-containing protein that carries oxygen from the lungs to tissues and carbon dioxide from tissues back to the lungs. Pisces are the advanced aquatic vertebrates capable of surviving at wide depth ranges. The shortfin mako shark (SMS) is the pelagic, largest, fastest and most sophisticated species of the shark kingdom with well developed eyes. Mostly the pisces species are cold blooded in nature. Distinctly, the SMSs are warm-blooded animals with an advanced circulatory system. SMSs are capable of maintaining elevated muscle temperatures up to 33 K above the ambient water temperatures at a depth of 150-500 m. SMSs have a diverged air-breathing mechanism compared with other vertebrates. The haemoglobin molecule consists of four polypeptide chains, namely two α chains, each with 140 amino acids and two β chains each having 136 amino acids. The SMS Hb was found to crystallize in monoclinic space group P21 using the hanging-drop vapour-diffusion method at room temperature. The crystal packing parameters for the SMS Hb structure contain one whole biological molecule in the asymmetric unit with a solvent content of 47%. The SMS Hb quaternary structural features interface-interface interactions and heme binding sites are discussed with different state Hbs and the results reveal that SMS Hb adopts an unliganded deoxy T state conformation.

  3. Inhibition of erythrocytes δ-aminolevulinic acid dehydratase (ALAD) activity in fish from waters affected by lead smelters

    USGS Publications Warehouse

    Schmitt, Christopher J.; Caldwell, Colleen A.; Olsen, Bill; Serdar, Dave; Coffey, Mike

    2002-01-01

    We assessed the effects on fish of lead (Pb) released to streamsby smelters located in Trail, BC (Canada), E. Helena, MT, Herculaneum, MO, and Glover, MO. Fish were collected by electrofishing from sites located downstream of smelters and from reference sites. Blood from each fish was analyzed for δ-aminolevulinic acid dehydratase (ALAD) activity and hemoglobin (Hb), and samples of blood, liver, or carcass were analyzed for Pb, zinc (Zn), or both. Fish collected downstreamof all four smelters sites had elevated Pb concentrations, decreased ALAD activity, or both relative to their respectivereference sites. At E. Helena, fish from the downstream site also had lower Hb concentrations than fish from upstream. Differences among taxa were also apparent. Consistent with previous studies, ALAD activity in catostomids (Pisces: Catostomidae-northern hog sucker,Hypentelium nigricans;river carpsucker, Carpiodes carpio; largescale sucker, Catostomus macrocheilus; and mountain sucker, C. platyrhynchus) seemed more sensitive to Pb-induced ALADinhibition than the salmonids (Pisces: Salmonidae-rainbow trout,Oncorhynchus mykiss; brook trout,Salvelinus fontinalis) or common carp (Cyprinus carpio). Some of these differences may have resulted from differential accumulation of Zn, which was not measured at all sites. We detected noALAD activity in channel catfish (Ictaluruspunctatus) from either site on the Mississippi River at Herculaneum, MO. Our findings confirmed that Pb is releasedto aquatic ecosystems by smelters and accumulated by fish, andwe documented potentially adverse effects of Pb in fish. We recommend that Zn be measured along with Pb when ALAD activityis used as a biomarker and the collection of at least 10 fish ofa species at each site to facilitate statistical analysis.

  4. HI data reduction for the Arecibo Pisces-Perseus Supercluster Survey

    NASA Astrophysics Data System (ADS)

    Davis, Cory; Johnson, Cory; Craig, David W.; Haynes, Martha P.; Jones, Michael G.; Koopmann, Rebecca A.; Hallenbeck, Gregory L.; Undergraduate ALFALFA Team

    2017-01-01

    The Undergraduate ALFALFA team is currently focusing on the analysis of the Pisces-Perseus Supercluster to test current supercluster formation models. The primary goal of our research is to reduce L-band HI data from the Arecibo telescope. To reduce the data we use IDL programs written by our collaborators to reduce the data and find potential sources whose mass can be estimated by the baryonic Tully-Fisher relation, which relates the luminosity to the rotational velocity profile of spiral galaxies. Thus far we have reduced data and estimated HI masses for several galaxies in the supercluster region.We will give examples of data reduction and preliminary results for both the fall 2015 and 2016 observing seasons. We will also describe the data reduction process and the process of learning the associated software, and the use of virtual observatory tools such as the SDSS databases, Aladin, TOPCAT and others.This research was supported by the NSF grant AST-1211005.

  5. The relationships between fish health, metabolic rate, swimming performance and recovery in return-run sockeye salmon, Oncorhynchus nerka (Walbaum).

    PubMed

    Tierney, K B; Farrell, A P

    2004-11-01

    The repeat swimming ability and oxygen uptake (Mo2) of adult sockeye salmon, Oncorhynchus nerka (Walbaum), were assessed at ambient water temperatures at three field locations along their migration route. Following these measurements, internal and external fish condition was evaluated according to United States Environmental Protection Agency guidelines. Here we report on the physiological characteristics of fish having either moderate or severe levels of disease and injury. Routine oxygen uptake (Mo2) did not differ between healthy fish and those with indices of ill health. In contrast, fish classified as sick, which included conditions of damaged internal organs, an Ichthyophonus spp. heart infection, a Saprolegnia spp. gill infection, and skin wounds, had a lower post-exercise Mo2 and were unable to repeat their critical swim speed (U(crit)) on the second swim test. Moderate levels of disease or injury did not significantly affect either U(crit) or post-exercise Mo2. We conclude that the ability of adult salmon to recover quickly from exercise may be a useful indicator of sublethal pathologies.

  6. [Quantitative Prediction of Drug-Drug Interaction Caused by CYP Inhibition and Induction from In Vivo Data and Its Application in Daily Clinical Practices-Proposal for the Pharmacokinetic Interaction Significance Classification System (PISCS)].

    PubMed

    Ohno, Yoshiyuki

    2018-01-01

     Drug-drug interactions (DDIs) can affect the clearance of various drugs from the body; however, these effects are difficult to sufficiently evaluate in clinical studies. This article outlines our approach to improving methods for evaluating and providing drug information relative to the effects of DDIs. In a previous study, total exposure changes to many substrate drugs of CYP caused by the co-administration of inhibitor or inducer drugs were successfully predicted using in vivo data. There are two parameters for the prediction: the contribution ratio of the enzyme to oral clearance for substrates (CR), and either the inhibition ratio for inhibitors (IR) or the increase in clearance of substrates produced by induction (IC). To apply these predictions in daily pharmacotherapy, the clinical significance of any pharmacokinetic changes must be carefully evaluated. We constructed a pharmacokinetic interaction significance classification system (PISCS) in which the clinical significance of DDIs was considered in a systematic manner, according to pharmacokinetic changes. The PISCS suggests that many current 'alert' classifications are potentially inappropriate, especially for drug combinations in which pharmacokinetics have not yet been evaluated. It is expected that PISCS would contribute to constructing a reliable system to alert pharmacists, physicians and consumers of a broad range of pharmacokinetic DDIs in order to more safely manage daily clinical practices.

  7. Searching for new young stars in the Northern hemisphere: the Pisces moving group

    NASA Astrophysics Data System (ADS)

    Binks, A. S.; Jeffries, R. D.; Ward, J. L.

    2018-01-01

    Using the kinematically unbiased technique described in Binks, Jeffries & Maxted (2015), we present optical spectra for a further 122 rapidly rotating (rotation periods <6 d), X-ray active FGK stars, selected from the SuperWASP survey. We identify 17 new examples of young, probably single stars with ages of <200 Myr and provide additional evidence for a new Northern hemisphere kinematic association: the Pisces moving group (MG). The group consists of 14 lithium-rich G- and K-type stars that have a dispersion of only ∼3 km s-1 in each Galactic space velocity coordinate. The group members are approximately coeval in the colour-magnitude diagram, with an age of 30-50 Myr, and have similar, though not identical, kinematics to the Octans-Near MG.

  8. Codon usage bias and phylogenetic analysis of mitochondrial ND1 gene in pisces, aves, and mammals.

    PubMed

    Uddin, Arif; Choudhury, Monisha Nath; Chakraborty, Supriyo

    2018-01-01

    The mitochondrially encoded NADH:ubiquinone oxidoreductase core subunit 1 (MT-ND1) gene is a subunit of the respiratory chain complex I and involved in the first step of the electron transport chain of oxidative phosphorylation (OXPHOS). To understand the pattern of compositional properties, codon usage and expression level of mitochondrial ND1 genes in pisces, aves, and mammals, we used bioinformatic approaches as no work was reported earlier. In this study, a perl script was used for calculating nucleotide contents and different codon usage bias parameters. The codon usage bias of MT-ND1 was low but the expression level was high as revealed from high ENC and CAI value. Correspondence analysis (COA) suggests that the pattern of codon usage for MT-ND1 gene is not same across species and that compositional constraint played an important role in codon usage pattern of this gene among pisces, aves, and mammals. From the regression equation of GC12 on GC3, it can be inferred that the natural selection might have played a dominant role while mutation pressure played a minor role in influencing the codon usage patterns. Further, ND1 gene has a discrepancy with cytochrome B (CYB) gene in preference of codons as evident from COA. The codon usage bias was low. It is influenced by nucleotide composition, natural selection, mutation pressure, length (number) of amino acids, and relative dinucleotide composition. This study helps in understanding the molecular biology, genetics, evolution of MT-ND1 gene, and also for designing a synthetic gene.

  9. Differences in Ichthyophonus prevalence and infection severity between upper Yukon River and Tanana River chinook salmon, Oncorhynchus tshawytscha (Walbaum), stocks

    USGS Publications Warehouse

    Kocan, R.; Hershberger, P.

    2006-01-01

    Two genetically distinct populations of chinook salmon, Oncorhynchus tshawytscha (Walbaum), were simultaneously sampled at the confluence of the Yukon and Tanana rivers in 2003. Upper Yukon-Canadian fish had significantly higher infection prevalence as well as more severe infections (higher parasite density in heart tissue) than the lower Yukon-Tanana River fish. Both populations had migrated the same distance from the mouth of the Yukon River at the time of sampling but had significantly different distances remaining to swim before reaching their respective spawning grounds. Multiple working hypotheses are proposed to explain the differences between the two stocks: (1) the two genetically distinct populations have different inherent resistance to infection, (2) genetically influenced differences in feeding behaviour resulted in temporal and/or spatial differences in exposure, (3) physiological differences resulting from different degrees of sexual maturity influenced the course of disease, and (4) the most severely infected Tanana River fish either died en route or fatigued and were unable to complete their migration to the Tanana River, thus leaving a population of apparently healthier fish. ?? 2006 Blackwell Publishing Ltd.

  10. Aquarius-Pisces Constellation Boundary Update

    NASA Astrophysics Data System (ADS)

    Durst, Steve

    2017-06-01

    Observation, mapping and study of Galaxy Stars has provided humanity direction, foundation, clarity and understanding through the ages.Human civilization advances itself using increasing intelligence and knowledge to develop tools and know how, the science of constellation star maps included: All that has been created by humanity, is to serve humanity.When people continue to use constellation star maps that no longer serve people effectively, the maps are updated, as is now the Aquarius-Pisces Constellation Boundary Update (APCBU), which marks 2000 as the year the Sun is in Aquarius at the vernal equinox.The 21st Century APCBU accounts for and incorporates science factors of precession, relativity and galacticity for professional astronomers, and social imperatives of increasing freedom, liberation and egalitarian culture for the 7.5 billion people of Earth.Twenty years into this first century of a new millennium and a new age is an effective time for an APCBU of such elegant simplicity that it changes less than 0.1% of the area of the IAU 1930 official constellation map, which marks 2597 about the year the Sun is in Aquarius at the time of the vernal equinox.The 21st Century APCBU results provide clarity and direction for humanity's next 2,000 years, if not 10,000 or 12,000 years, and advance the official astronomy / science start of the Aquarius Age -- long anticipated, desired, and imperative, especially in America -- by some 600 years.How much attention is increasingly focused on this region of the sky -- such as the recent discovery of 7 Earth-like worlds orbiting the Trappist-1 star in the Aquarius constellation -- will be an epochal 21st Century phenomenon of human science, society, and starlife.

  11. Antimicrobial peptide CAP18 and its effect on Yersinia ruckeri infections in rainbow trout Oncorhynchus mykiss (Walbaum): comparing administration by injection and oral routes.

    PubMed

    Chettri, J K; Mehrdana, F; Hansen, E B; Ebbensgaard, A; Overgaard, M T; Lauritsen, A H; Dalsgaard, I; Buchmann, K

    2017-01-01

    The antimicrobial peptide CAP18 has been demonstrated to have a strong in vitro bactericidal effect on Yersinia ruckeri, but its activity in vivo has not been described. In this work, we investigated whether CAP18 protects rainbow trout Oncorhynchus mykiss (Walbaum) against enteric red mouth disease caused by this pathogen either following i.p. injection or by oral administration (in feed). It was found that injection of CAP18 into juvenile rainbow trout before exposure to Y. ruckeri was associated with lowered mortality compared to non-medicated fish although it was less effective than the conventional antibiotic oxolinic acid. Oral administration of CAP18 to trout did not prevent infection. The proteolytic effect of secretions on the peptide CAP18 in the fish gastrointestinal tract is suggested to account for the inferior effect of oral administration. © 2016 John Wiley & Sons Ltd.

  12. Calculations of Helium Bubble Evolution in the PISCES Experiments with Cluster Dynamics

    NASA Astrophysics Data System (ADS)

    Blondel, Sophie; Younkin, Timothy; Wirth, Brian; Lasa, Ane; Green, David; Canik, John; Drobny, Jon; Curreli, Davide

    2017-10-01

    Plasma surface interactions in fusion tokamak reactors involve an inherently multiscale, highly non-equilibrium set of phenomena, for which current models are inadequate to predict the divertor response to and feedback on the plasma. In this presentation, we describe the latest code developments of Xolotl, a spatially-dependent reaction diffusion cluster dynamics code to simulate the divertor surface response to fusion-relevant plasma exposure. Xolotl is part of a code-coupling effort to model both plasma and material simultaneously; the first benchmark for this effort is the series of PISCES linear device experiments. We will discuss the processes leading to surface morphology changes, which further affect erosion, as well as how Xolotl has been updated in order to communicate with other codes. Furthermore, we will show results of the sub-surface evolution of helium bubbles in tungsten as well as the material surface displacement under these conditions.

  13. Infection of gill and kidney of Fraser River sockeye salmon, Oncorhynchus nerka (Walbaum), by Parvicapsula minibicornis and its effect on host physiology.

    PubMed

    Bradford, M J; Lovy, J; Patterson, D A

    2010-09-01

    Adult sockeye salmon, Oncorhynchus nerka (Walbaum), migrating upstream in the Fraser River, British Columbia, are exposed to the myxozoan parasite Parvicapsula minibicornis when they enter the river from the ocean. Infections are initially localized in the kidney but have recently been associated with branchitis in one population. Adult fish from five locations in the watershed were sampled to determine whether branchitis was widespread. P. minibicornis infections in kidney glomeruli were prevalent in all samples except for a sample of fish that had just entered the Fraser River from the ocean. For fish captured in spawning streams, parasites were observed in the renal tubules and gill, and branchitis was observed in 70% of fish. Plasma osmolality was negatively correlated with the number of parasites in the kidney tubules, which we hypothesize to be caused by the breach of glomerular membranes as the parasite leaves the fish. Plasma lactate values increased with increasing levels of pathology in gills. These findings support the hypothesis that P. minibicornis impacts the physiology of migrating fish, which may in turn affect the likelihood that adults will be able to migrate and spawn successfully.

  14. VizieR Online Data Catalog: 33 RR Lyrae observed in Pisces with K2-E2 (Molnar+, 2015)

    NASA Astrophysics Data System (ADS)

    Molnar, L.; Szabo, R.; Moskalik, P. A.; Nemec, J. M.; Guggenberger, E.; Smolec, R.; Poleski, R.; Plachy, E.; Kolenberg, K.; Kollath, Z.

    2016-03-01

    Kepler observed a stellar field around the vernal equinox point in Pisces (centre coordinates: RA=359°, DE=-2°) between 2014 February 04 and 13. The primary goal of this K2 Two-Wheel Concept Engineering Test (hereafter K2-E2) was to test the performance of the telescope in fine guidance mode. As well, the observations of nearly 2000 targets were made available for the scientific community. We identified 33 potential RR Lyrae stars in the K2-E2 sample and extracted their photometric data with the pyke software, developed for the Kepler mission by the Kepler Guest Observer Office (Still & Barclay, 2012, Astrophysics Source Code Library record ascl:1208.004). (6 data files).

  15. Transport and storage of anthropogenic C across the Greenland-Portugal OVIDE section: Observations vs NEMO-PISCES

    NASA Astrophysics Data System (ADS)

    Gehlen, M.; Racapé, V.; Zunino, P.; Lherminier, P.; Bopp, L.; Mercier, H.

    2016-02-01

    Authors: Racapé V., Zunino P., Lherminier P., Bopp L., Mercier, H. and Gehlen M. At present, the ocean takes up approximately one-third of total anthropogenic carbon dioxide emissions. The North Atlantic Ocean is a major sink region for anthropogenic carbon (CANT) and a major contributor to its storage and transport. While evidence is growing that storage and transport are variable on interannual to decadal timescales, their evolution in recent decades and in the future remains uncertain. The variability is thought to be controlled in large part by the intensity of the meridional overturning circulation (MOC), which is suggested to slow down over the 21st century. This study aims to investigate the relationship between CANT transport across the Greenland-Portugal OVIDE section and Cant storage in the North Atlantic basin, as well as their combined evolution over the past 40 years. It relies on the combination of a pluriannual data set and output from the global biogeochemical ocean general circulation model NEMO/PISCES at 1/2° spatial resolution forced by the atmospheric reanalysis DFS4.2. Based on an observation-model comparison, the CANT advective transport is largely underestimated by the model (5 times) compared to the data-based estimate. However, the vertical gradient of CANT in the water column is well reproduced by NEMO/PISCES, supporting the use of a novel indicator computed by Zunino et al. (2014) to express the variability of CANT transport (T°CANT). Following the approach by Zunino et al. (2014), the estimator, T°CANT, was first derived in the model from MOCσ and DELTA-CANT (the vertical gradient of CANT between the upper and the lower branch of MOCσ) averaged over the month of June. Next, the representativity of T°CANT derived from a single sampling event per year was evaluated against estimates computed from annual mean values of MOCσ and DELTA-CANT. After evaluation of the model skill over the period covered by observations, the model is used

  16. The skin immune response of rainbow trout, Oncorhynchus mykiss (Walbaum), associated with puffy skin disease (PSD).

    PubMed

    Christie, Lyndsay; van Aerle, Ronny; Paley, Richard K; Verner-Jeffreys, David W; Tidbury, Hannah; Green, Matthew; Feist, Stephen W; Cano, Irene

    2018-07-01

    Puffy skin disease (PSD) is an emerging skin condition which affects rainbow trout, Oncorhynchus mykiss (Walbaum). The transmission pattern of PSD suggests an infectious aetiology, however, the actual causative infectious agent(s) remain(s) unknown. In the present study, the rainbow trout epidermal immune response to PSD was characterised. Skin samples from infected fish were analysed and classified as mild, moderate or severe PSD by gross pathology and histological assessment. The level of expression of 26 immune-associated genes including cytokines, immunoglobulins and cell markers were examined by TaqMan qPCR assays. A significant up-regulation of the gene expression of C3, lysozyme, IL-1β and T-bet and down-regulation of TGFβ and TLR3 was observed in PSD fish compared to control fish. MHCI gene expression was up-regulated only in severe PSD lesions. Histological examinations of the epidermis showed a significant increase in the number of eosinophil cells and dendritic melanocytes in PSD fish. In severe lesions, mild diffuse lymphocyte infiltration was observed. IgT and CD8 positive cells were detected locally in the skin of PSD fish by in situ hybridisation (ISH), however, the gene expression of those genes was not different from control fish. Total IgM in serum of diseased animals was not different from control fish, measured by a sandwich ELISA, nor was significant up regulation of IgM gene expression in PSD lesions observed. Taken together, these results show activation of the complement pathway, up-regulation of a Th17 type response and eosinophilia during PSD. This is typical of a response to extracellular pathogens (i.e. bacteria and parasites) and allergens, commonly associated with acute dermatitis. Copyright © 2018. Published by Elsevier Ltd.

  17. Mixed Material Plasma-Surface Interactions in ITER: Recent Results from the PISCES Group

    DOE Office of Scientific and Technical Information (OSTI.GOV)

    Tynan, George R.; Baldwin, Matthew; Doerner, Russell

    This paper summarizes recent PISCES studies focused on the effects associated with mixed species plasmas that are similar in composition to what one might expect in ITER. Formation of nanometer scale whiskerlike features occurs in W surfaces exposed to pure He and mixed D/He plasmas and appears to be associated with the formation of He nanometer-scaled bubbles in the W surface. Studies of Be-W alloy formation in Be-seeded D plasmas suggest that this process may be important in ITER all metal wall operational scenarios. Studies also suggest that BeD formation via chemical sputtering of Be walls may be an importantmore » first wall erosion mechanism. D retention in ITER mixed materials has also been studied. The D release behavior from beryllium co-deposits does not appear to be a diffusion dominated process, but instead is consistent with thermal release from a number of variable trapping energy sites. As a result, the amount of tritium remaining in codeposits in ITER after baking will be determined by the maximum temperature achieved, rather than by the duration of the baking cycle.« less

  18. Investigation of Plasma Surface Interactions with the PISCES ELM Laser System

    NASA Astrophysics Data System (ADS)

    Umstadter, K. R.; Baldwin, M.; Hanna, J.; Doerner, R.; Lynch, T.; Palmer, T.; Tynan, G. R.

    2007-11-01

    When an ELM occurs in tokamaks, up to 30% of the pedestal energy can be deposited on the wall of the tokamak causing heating & material loss due to sublimation, evaporation and melt splashing of plasma facing components (PFCs) and expansion of the ejected material into the plasma. We have explored heat pulses using an electrical power circuit to draw electrons from the plasma to heat samples ohmically. This system is limited in power to ˜250kJ/m^2 at the minimum pulse width of 10ms and depletes the plasma column, complicating spectroscopy. We have completed calculations that indicate that a pulsed laser system can be used to simulate the heat pulse of ELMs. We are integrating laser systems into the existing PFC research program in PISCES, a laboratory facility capable of reproducing plasma-materials interactions expected during normal operation of large tokamaks. Two Nd:YAG lasers capable of delivering up to 50J of energy over various pulsewidths are used for the experiments. Laser heat pulse only, H+/D+ plasma only, and laser+plasma experiments were conducted and initial results indicate that metals behave very differently while exposed to plasma and simultaneous heat pulses. We will also discuss initial results for carbon PFCs and material transport into the plasma. Supported by US DoE grant DE-FG02-07ER-54912.

  19. GITR Simulation of Helium Exposed Tungsten Erosion and Redistribution in PISCES-A

    NASA Astrophysics Data System (ADS)

    Younkin, T. R.; Green, D. L.; Doerner, R. P.; Nishijima, D.; Drobny, J.; Canik, J. M.; Wirth, B. D.

    2017-10-01

    The extreme heat, charged particle, and neutron flux / fluence to plasma facing materials in magnetically confined fusion devices has motivated research to understand, predict, and mitigate the associated detrimental effects. Of relevance to the ITER divertor is the helium interaction with the tungsten divertor, the resulting erosion and migration of impurities. The linear plasma device PISCES A has performed dedicated experiments for high (4x10-22 m-2s-1) and low (4x10-21 m-2s-1) flux, 250 eV He exposed tungsten targets to assess the net and gross erosion of tungsten and volumetric transport. The temperature of the target was held between 400 and 600 degrees C. We present results of the erosion / migration / re-deposition of W during the experiment from the GITR (Global Impurity Transport) code coupled to materials response models. In particular, the modeled and experimental W I emission spectroscopy data for the 429.4 nm wavelength and net erosion through target and collector mass difference measurements are compared. Overall, the predictions are in good agreement with experiments. This material is supported by the US DOE, Office of Science, Office of Fusion Energy Sciences and Office of Advanced Scientific Computing Research through the SciDAC program on Plasma-Surface Interactions.

  20. Differences in habitat selection of male and female megrim ( Lepidorhombus whiffiagonis, Walbaum) to the west of Ireland. A result of differences in life-history strategies between the sexes?

    NASA Astrophysics Data System (ADS)

    Gerritsen, H. D.; McGrath, D.; Lordan, C.; Harlay, X.

    2010-11-01

    The sex ratio in the catches of megrim ( Lepidorhombus whiffiagonis, Walbaum) varied systematically with depth on three independent trawl survey series off the west coast of Ireland. Female megrim dominated the shallow catches, while males were more common in catches from deeper waters. The size difference between the sexes alone cannot explain this pattern because it remained evident when fish length was taken into account. Therefore size-specific habitat preferences or size-selective fishing mortality cannot fully explain the observed trend in the sex ratio of megrim. Female megrim grow to a larger size, at a faster rate than males and it is likely that their differences in habitat preferences are related to this. Shallower waters are warmer during the growing season and are likely to provide better conditions for fast growth. An understanding of the mechanisms behind these patterns is an important consideration in the management and conservation of this fish stock, which might be particularly vulnerable because the commercial landings are to a large extent dominated by female megrim.

  1. Uptake of erythromycin by first-feeding sockeye salmon, Oncorhynchus nerka (Walbaum), fed live or freeze-dried enriched adult Artemia or medicated pellets.

    PubMed

    Cook, M A; Rust, M B; Massee, K; Majack, T; Peterson, M E

    2003-05-01

    The potential to use adult Artemia to deliver erythromycin to first-feeding sockeye salmon, Oncorhynchus nerka (Walbaum), was investigated in three trials. In the first trial, first-feeding sockeye were fed live erythromycin enriched adult Artemia or pellets containing equal amounts of erythromycin for 35 days. At the end of the trial, tissue erythromycin concentration of the fish fed the live Artemia was significantly greater (P < 0.05, 25.52 +/- 1.29 microg mL(-1); mean +/- SEM), than the tissue concentration of the fish fed the pellets (0.72 +/- 0.01 microg mL(-1)). In the second trial, first-feeding sockeye were fed either live or freeze-dried bioencapsulated erythromycin (adult Artemia) or pellets containing erythromycin daily for 21 days. Mean daily erythromycin concentration in fish fed the freeze-dried Artemia, live Artemia, or pellets did not differ significantly. In the third trial, apparent erythromycin digestibility was determined. Significantly more (P < 0.05) erythromycin was retained by juvenile sockeye fed freeze-dried bioencapsulated erythromycin (98.3 +/- 1.0%) compared with medicated pellets (89.2 +/- 1.7%). Uptake of bioencapsulated erythromycin from adult Artemia (live or freeze-dried) appears to be greater than uptake from pellets. Freeze-dried and live Artemia were equally effective at delivery suggesting enriched freeze-dried adult Artemia could be produced into a highly palatable, consistent, off-the-shelf product.

  2. Puffy Skin Disease Is an Emerging Transmissible Condition in Rainbow Trout Oncorhynchus mykiss Walbaum

    PubMed Central

    Cano, Irene; Verner-Jeffreys, David W.; van Aerle, Ronny; Paley, Richard K.; Peeler, Edmund J.; Green, Matthew; Rimmer, Georgina S. E.; Savage, Jacqueline; Joiner, Claire L.; Bayley, Amanda E.; Mewett, Jason; Hulland, Jonathan; Feist, Stephen W.

    2016-01-01

    The transmission of puffy skin disease (PSD) to rainbow trout Oncorhynchus mykiss Walbaum was tested in the laboratory by conducting co-habitation challenges with puffy skin (PS)-affected fish (Trojans) collected from the field. Two separate challenges were conducted using Trojans sourced from two different sites and diploid (first trial) or triploid (second trial) naïve fish. PSD-specific clinical signs were observed in both groups of naïve fish, with 66% of the fish sampled during the challenges showing signs of varying severity. The first clinical features of PSD were presented as white oval skin patches on one or both flanks 15–21 days post-challenge (dpc). The extent of the lesions ranged from 10 to 90% of the body surface, depending on the severity of the lesion. Both the severity and number of affected fish increased during the challenge. Macroscopically, oedema of the skin and multifocal petechial haemorrhaging were observed towards the end of the trials. Abnormal fish behaviour consisting of “flashing” and excessive mucous production was noted from 15 dpc onwards. Fish with severe PSD lesions also displayed inappetence and associated emaciation. Rodlet cells were observed in 41% of the fresh skin scrapes analysed from the second trial. Histologically epidermal oedema was observed in 31% of the naive fish showing gross pathology, with additional 12% displaying epidermal hyperplasia, mostly observed at the end of the challenge. Other concomitant features of the PSD lesions in challenged fish were epithelial erosion and sloughing, and occasionally mild or focal inflammation. No consistent pathology of internal organs was observed. The parasites Ichthyophthirius multifiliis and Ichthyobodo necator were observed in skin samples of a proportion of naïve challenged fish and in Trojans but not in control fish. The presence of these and other known fish pathogens in the skin of PSD-fish was confirmed by high-throughput sequencing analysis. In summary, we

  3. Materials erosion and redeposition studies at the PISCES-facility: net erosion under redeposition

    DOE Office of Scientific and Technical Information (OSTI.GOV)

    Hirooka, Y.; Goebel, D.M.; Conn, R.W.

    1986-05-01

    Simultaneous erosion and redeposition of copper and 304 stainless steel under controlled and continuous plasma (D,He,Ar) bombardment has been investigated in the PISCES-facility, which generates typical edge-plasma conditions of magnetic fusion devices. The plasma bombardment conditions are: incident ion flux in the range from 10/sup 17/ to 10/sup 18/ ions/sec/cm/sup 2/, ion bombarding energy of 100 eV, electron temperature in the range from 5 to 15 eV, plasma density in the range from 10/sup 11/ to 10/sup 13/ cm/sup -3/, target temperature in the range from 300 to 900K, and the total ion fluence in the range from 10/sup 20/more » to 10/sup 22/ ions/cm/sup 2/. The net erosion yield under redeposition is found to be significantly smaller than the classical sputtering yield data. A first-order modeling is attempted to interpret the erosion and redeposition behavior of materials under plasma bombardment. It is pointed out both theoretically and experimentally that the mean free path for electron impact ionization of the sputtered material is the key parameter to control the overall mechanism of erosion and redeposition. Strongly modified surface morphologies of bombarded targets are observed and indicate a retrapping effect.« less

  4. Monitoring of the in-river migration of smolts from two groups of spring chinook salmon, Oncorhynchus tshawytscha (Walbaum), with different profiles of Renibacterium salmoninarum infection

    USGS Publications Warehouse

    Pascho, R.J.; Elliott, D.G.; Achord, S.

    1993-01-01

    Broodstock segregation based on the measurement of maternal Renibacterium salmoninarum infection levels by the enzyme-linked immunosorbent assay (ELISA) and the membrane filtration-fluorescent antibody technique (MF-FAT) was previously shown to affect the prevalence and levels of bacterial kidney disease (BKD) in progeny of chinook salmon, Oncorhynchus tshawytscha (Walbaum), during hatchery rearing. Subgroups of fish from that study were marked with passive integrated transponder (PIT) tags, and monitored by PIT-tag detectors during the first 342km of their migration to the Pacific Ocean. Differences in the recovery of tagged fish were significant (P≤ 0·01) at each detection point and became more pronounced as the fish moved downstream. Cumulative recoveries of fish from the low-BKD group and the high-BKD group, respectively, were 31% and 28% after 116km, 44% and 37% after 176km, and 51% and 42% after 342km. There were no apparent differences in the migration timing of the two groups to the first detection point. The data suggested that in-river survival was higher in the progeny group from parents that had low R. salmoninarum infection levels or tested negative for R. salmoninarum (low-BKD group) than in the group female parents with high infection levels (high-BKD group).

  5. Trophic ecomorphology of Siluriformes (Pisces, Osteichthyes) from a tropical stream.

    PubMed

    Pagotto, J P A; Goulart, E; Oliveira, E F; Yamamura, C B

    2011-05-01

    The present study analysed the relationship between morphology and trophic structure of Siluriformes (Pisces, Osteichthyes) from the Caracu Stream (22º 45' S and 53º 15' W), a tributary of the Paraná River (Brazil). Sampling was carried out at three sites using electrofishing, and two species of Loricariidae and four of Heptapteridae were obtained. A cluster analysis revealed the presence of three trophic guilds (detritivores, insectivores and omnivores). Principal components analysis demonstrated the segregation of two ecomorphotypes: at one extreme there were the detritivores (Loricariidae) with morphological structures that are fundamental in allowing them to fix themselves to substrates characterised by rushing torrents, thus permitting them to graze on the detritus and organic materials encrusted on the substrate; at the other extreme of the gradient there were the insectivores and omnivores (Heptapteridae), with morphological characteristics that promote superior performance in the exploitation of structurally complex habitats with low current velocity, colonised by insects and plants. Canonical discriminant analysis revealed an ecomorphological divergence between insectivores, which have morphological structures that permit them to capture prey in small spaces among rocks, and omnivores, which have a more compressed body and tend to explore food items deposited in marginal backwater zones. Mantel tests showed that trophic structure was significantly related to the body shape of a species, independently of the phylogenetic history, indicating that, in this case, there was an ecomorphotype for each trophic guild. Therefore, the present study demonstrated that the Siluriformes of the Caracu Stream were ecomorphologically structured and that morphology can be applied as an additional tool in predicting the trophic structure of this group.

  6. TWO LOCAL VOLUME DWARF GALAXIES DISCOVERED IN 21 cm EMISSION: PISCES A AND B

    DOE Office of Scientific and Technical Information (OSTI.GOV)

    Tollerud, Erik J.; Geha, Marla C.; Grcevich, Jana

    2015-01-01

    We report the discovery of two dwarf galaxies, Pisces A and B, from a blind 21 cm H I search. These were the only two galaxies found via optical imaging and spectroscopy of 22 H I clouds identified in the GALFA-H I survey as dwarf galaxy candidates. They have properties consistent with being in the Local Volume (<10 Mpc), and one has resolved stellar populations such that it may be on the outer edge of the Local Group (∼1 Mpc from M31). While the distance uncertainty makes interpretation ambiguous, these may be among the faintest star-forming galaxies known. Additionally, rough estimatesmore » comparing these galaxies to ΛCDM dark matter simulations suggest consistency in number density, implying that the dark matter halos likely to host these galaxies are primarily H I-rich. The galaxies may thus be indicative of a large population of dwarfs at the limit of detectability that are comparable to the faint satellites of the Local Group. Because they are outside the influence of a large dark matter halo to alter their evolution, these galaxies can provide critical anchors to dwarf galaxy formation models.« less

  7. Discovery of an Ultra-diffuse Galaxy in the Pisces--Perseus Supercluster

    NASA Astrophysics Data System (ADS)

    Martínez-Delgado, David; Läsker, Ronald; Sharina, Margarita; Toloba, Elisa; Fliri, Jürgen; Beaton, Rachael; Valls-Gabaud, David; Karachentsev, Igor D.; Chonis, Taylor S.; Grebel, Eva K.; Forbes, Duncan A.; Romanowsky, Aaron J.; Gallego-Laborda, J.; Teuwen, Karel; Gómez-Flechoso, M. A.; Wang, Jie; Guhathakurta, Puragra; Kaisin, Serafim; Ho, Nhung

    2016-04-01

    We report the discovery of DGSAT I, an ultra-diffuse, quenched galaxy located 10.°4 in projection from the Andromeda galaxy (M31). This low-surface brightness galaxy (μV = 24.8 mag arcsec-2), found with a small amateur telescope, appears unresolved in sub-arcsecond archival Subaru/Suprime-Cam images, and hence has been missed by optical surveys relying on resolved star counts, in spite of its relatively large effective radius (Re(V) = 12″) and proximity (15‧) to the well-known dwarf spheroidal galaxy And II. Its red color (V - I = 1.0), shallow Sérsic index (nV = 0.68), and the absence of detectable Hα emission are typical properties of dwarf spheroidal galaxies and suggest that it is mainly composed of old stars. Initially interpreted as an interesting case of an isolated dwarf spheroidal galaxy in the local universe, our radial velocity measurement obtained with the BTA 6 m telescope (Vh = 5450 ± 40 km s-1) shows that this system is an M31-background galaxy associated with the filament of the Pisces-Perseus supercluster. At the distance of this cluster (˜78 Mpc), DGSAT I would have an Re ˜ 4.7 kpc and MV ˜ -16.3. Its properties resemble those of the ultra-diffuse galaxies (UDGs) recently discovered in the Coma cluster. DGSAT I is the first case of these rare UDGs found in this galaxy cluster. Unlike the UDGs associated with the Coma and Virgo clusters, DGSAT I is found in a much lower density environment, which provides a fresh constraint on the formation mechanisms for this intriguing class of galaxy.

  8. Methods for design and evaluation of integrated hardware-software systems for concurrent computation

    NASA Technical Reports Server (NTRS)

    Pratt, T. W.

    1985-01-01

    Research activities and publications are briefly summarized. The major tasks reviewed are: (1) VAX implementation of the PISCES parallel programming environment; (2) Apollo workstation network implementation of the PISCES environment; (3) FLEX implementation of the PISCES environment; (4) sparse matrix iterative solver in PSICES Fortran; (5) image processing application of PISCES; and (6) a formal model of concurrent computation being developed.

  9. DISCOVERY OF AN ULTRA-DIFFUSE GALAXY IN THE PISCES-PERSEUS SUPERCLUSTER

    DOE Office of Scientific and Technical Information (OSTI.GOV)

    Martínez-Delgado, David; Grebel, Eva K.; Läsker, Ronald

    We report the discovery of DGSAT I, an ultra-diffuse, quenched galaxy located 10.°4 in projection from the Andromeda galaxy (M31). This low-surface brightness galaxy (μ{sub V} = 24.8 mag arcsec{sup −2}), found with a small amateur telescope, appears unresolved in sub-arcsecond archival Subaru/Suprime-Cam images, and hence has been missed by optical surveys relying on resolved star counts, in spite of its relatively large effective radius (R{sub e}(V) = 12″) and proximity (15′) to the well-known dwarf spheroidal galaxy And II. Its red color (V − I = 1.0), shallow Sérsic index (n{sub V} = 0.68), and the absence of detectable Hα emission aremore » typical properties of dwarf spheroidal galaxies and suggest that it is mainly composed of old stars. Initially interpreted as an interesting case of an isolated dwarf spheroidal galaxy in the local universe, our radial velocity measurement obtained with the BTA 6 m telescope (V{sub h} = 5450 ± 40 km s{sup −1}) shows that this system is an M31-background galaxy associated with the filament of the Pisces-Perseus supercluster. At the distance of this cluster (∼78 Mpc), DGSAT I would have an R{sub e} ∼ 4.7 kpc and M{sub V} ∼ −16.3. Its properties resemble those of the ultra-diffuse galaxies (UDGs) recently discovered in the Coma cluster. DGSAT I is the first case of these rare UDGs found in this galaxy cluster. Unlike the UDGs associated with the Coma and Virgo clusters, DGSAT I is found in a much lower density environment, which provides a fresh constraint on the formation mechanisms for this intriguing class of galaxy.« less

  10. An RR Lyrae family portrait: 33 stars observed in Pisces with K2-E2

    NASA Astrophysics Data System (ADS)

    Molnár, L.; Szabó, R.; Moskalik, P. A.; Nemec, J. M.; Guggenberger, E.; Smolec, R.; Poleski, R.; Plachy, E.; Kolenberg, K.; Kolláth, Z.

    2015-10-01

    A detailed analysis is presented of 33 RR Lyrae stars in Pisces observed with the Kepler space telescope over the 8.9-d long K2 Two-Wheel Concept Engineering Test. The sample includes not only fundamental-mode and first-overtone (RRab and RRc) stars but the first two double-mode (RRd) stars that Kepler detected and the only modulated first-overtone star ever observed from space so far. The precision of the extracted K2 light curves made it possible to detect low-amplitude additional modes in all subtypes. All RRd and non-modulated RRc stars show the additional mode at PX/P1 ˜ 0.61 that was detected in previous space-based photometric measurements. A periodicity longer than the fundamental mode was tentatively identified in one RRab star that might belong to a gravity mode. We determined the photometric [Fe/H] values for all fundamental-mode stars and provide the preliminary results of our efforts to fit the double-mode stars with non-linear hydrodynamic pulsation models. The results from this short test run indicate that the K2 mission will be, and has started to be, an ideal tool to expand our knowledge about RR Lyrae stars. As a by-product of the target search and analysis, we identified 165 bona fide double-mode RR Lyrae stars from the Catalina Sky Survey observations throughout the sky, 130 of which are new discoveries.

  11. Effects of selenium dietary enhancement on hatchery-reared coho salmon, Oncorhynchus kisutch (Walbaum), when compared with wild coho: hepatic enzymes and seawater adaptation evaluated.

    USGS Publications Warehouse

    Felton, S.P.; Landolt, M.L.; Grace, R.; Palmisano, A.N.

    1996-01-01

    Hatchery-reared coho salmon, Oncorhynchus kisutch (Walbaum), were fed elevated levels of selenium (as Na2SeO3) to raise eviscerated body burdens to the level measured in wild counterparts. The goal was to find a dietary concentration that would achieve the desired effect without causing damage to growth and normal development. To measure some indices of health, the detoxifying enzymes chosen were hepatic glutathione peroxidase (GSH-Px) and hepatic superoxide dismutase (SOD). Eviscerated body selenium (Se) concentration, GSH-Px and SOD levels were measured during and at the end of the 9 month freshwater feeding trial. Selenium retention and enzyme activity were also measured during 6 months’residence in sea water (SW). Selenium supplements were added to a commercial ration to give final concentrations of 1.1, 8.6, 11.1, 13.6 μg g-1 Se in the four respective diets. The results indicated that a dietary concentration of 8.6 μg g-1selenium was capable of inducing eviscerated body burdens similar to those found in wild fish. The elevated selenium levels persisted throughout the freshwater (FW) rearing phase, but declined when the fish were fed an unsupplemented ration upon SW entry. Superoxide dismutase levels did not increase above control levels. Glutathione peroxidase levels increased in fish fed the supplemented diets. GSH-Px activity declined in the higher supplemented dietary groups when all groups were reduced to the control group level of 1.1 μg g-1. Cumulative mortality in SW was 20% in fish fed either the 1.1 or the 8.6 μg g-1 Se diets. The 8.6 μg g-1 Se supplemented diets did produce healthy coho, comparable to their wild counterparts.

  12. Automated mapping of persistent ice and snow cover across the western U.S. with Landsat

    NASA Astrophysics Data System (ADS)

    Selkowitz, David J.; Forster, Richard R.

    2016-07-01

    We implemented an automated approach for mapping persistent ice and snow cover (PISC) across the conterminous western U.S. using all available Landsat TM and ETM+ scenes acquired during the late summer/early fall period between 2010 and 2014. Two separate validation approaches indicate this dataset provides a more accurate representation of glacial ice and perennial snow cover for the region than either the U.S. glacier database derived from US Geological Survey (USGS) Digital Raster Graphics (DRG) maps (based on aerial photography primarily from the 1960s-1980s) or the National Land Cover Database 2011 perennial ice and snow cover class. Our 2010-2014 Landsat-derived dataset indicates 28% less glacier and perennial snow cover than the USGS DRG dataset. There are larger differences between the datasets in some regions, such as the Rocky Mountains of Northwest Wyoming and Southwest Montana, where the Landsat dataset indicates 54% less PISC area. Analysis of Landsat scenes from 1987-1988 and 2008-2010 for three regions using a more conventional, semi-automated approach indicates substantial decreases in glaciers and perennial snow cover that correlate with differences between PISC mapped by the USGS DRG dataset and the automated Landsat-derived dataset. This suggests that most of the differences in PISC between the USGS DRG and the Landsat-derived dataset can be attributed to decreases in PISC, as opposed to differences between mapping techniques. While the dataset produced by the automated Landsat mapping approach is not designed to serve as a conventional glacier inventory that provides glacier outlines and attribute information, it allows for an updated estimate of PISC for the conterminous U.S. as well as for smaller regions. Additionally, the new dataset highlights areas where decreases in PISC have been most significant over the past 25-50 years.

  13. Automated mapping of persistent ice and snow cover across the western U.S. with Landsat

    USGS Publications Warehouse

    Selkowitz, David J.; Forster, Richard R.

    2016-01-01

    We implemented an automated approach for mapping persistent ice and snow cover (PISC) across the conterminous western U.S. using all available Landsat TM and ETM+ scenes acquired during the late summer/early fall period between 2010 and 2014. Two separate validation approaches indicate this dataset provides a more accurate representation of glacial ice and perennial snow cover for the region than either the U.S. glacier database derived from US Geological Survey (USGS) Digital Raster Graphics (DRG) maps (based on aerial photography primarily from the 1960s–1980s) or the National Land Cover Database 2011 perennial ice and snow cover class. Our 2010–2014 Landsat-derived dataset indicates 28% less glacier and perennial snow cover than the USGS DRG dataset. There are larger differences between the datasets in some regions, such as the Rocky Mountains of Northwest Wyoming and Southwest Montana, where the Landsat dataset indicates 54% less PISC area. Analysis of Landsat scenes from 1987–1988 and 2008–2010 for three regions using a more conventional, semi-automated approach indicates substantial decreases in glaciers and perennial snow cover that correlate with differences between PISC mapped by the USGS DRG dataset and the automated Landsat-derived dataset. This suggests that most of the differences in PISC between the USGS DRG and the Landsat-derived dataset can be attributed to decreases in PISC, as opposed to differences between mapping techniques. While the dataset produced by the automated Landsat mapping approach is not designed to serve as a conventional glacier inventory that provides glacier outlines and attribute information, it allows for an updated estimate of PISC for the conterminous U.S. as well as for smaller regions. Additionally, the new dataset highlights areas where decreases in PISC have been most significant over the past 25–50 years.

  14. Gone fishing in a fluid trial.

    PubMed

    Hjortrup, Peter B; Haase, Nicolai; Wetterslev, Jørn; Perner, Anders

    2016-03-01

    To maximise the yield of existing data by assessing the effect on mortality of being born under the zodiac sign Pisces in a trial of intravenous (IV) fluids. A retrospective observational study, with no predefined hypothesis or statistical analysis plan, of 26 Scandinavian intensive care units between 2009 and 2011. Patients aged 18 years or older with severe sepsis and in need of fluid resuscitation, randomised in the Scandinavian Starch for Severe Sepsis/ Septic Shock (6S) trial. Ninety-day mortality. We included all 798 randomised patients in our study; 70 (9%) were born under the sign of Pisces. The primary outcome (death within 90 days after randomisation) occurred in 25 patients (35.7%) in the Pisces group, compared with 348 patients (48%) in the non-Pisces group (relative risk, 0.75; 95% CI, 0.54-1.03; one-sided P = 0.03). In a multicentre randomised clinical trial of IV fluids, being born under the sign of Pisces was associated with a decreased risk of death. Our study shows that with convenient use of statistics and an enticing explanatory hypothesis, it is possible to achieve significant findings in post-hoc analyses of data from large trials.

  15. Nisin Z Production by Lactococcus lactis subsp. cremoris WA2-67 of Aquatic Origin as a Defense Mechanism to Protect Rainbow Trout (Oncorhynchus mykiss, Walbaum) Against Lactococcus garvieae.

    PubMed

    Araújo, Carlos; Muñoz-Atienza, Estefanía; Pérez-Sánchez, Tania; Poeta, Patrícia; Igrejas, Gilberto; Hernández, Pablo E; Herranz, Carmen; Ruiz-Zarzuela, Imanol; Cintas, Luis M

    2015-12-01

    Probiotics represent an alternative to chemotherapy and vaccination to control fish diseases, including lactococcosis caused by Lactococcus garvieae. The aims of this study were (i) to determine the in vitro probiotic properties of three bacteriocinogenic Lactococcus lactis subsp. cremoris of aquatic origin, (ii) to evaluate in vivo the ability of L. cremoris WA2-67 to protect rainbow trout (Oncorhynchus mykiss, Walbaum) against infection by L. garvieae, and (iii) to demonstrate the role of nisin Z (NisZ) production as an anti-infective mechanism. The three L. cremoris strains survived in freshwater at 18 °C for 7 days, withstood exposure to pH 3.0 and 10 % (v/v) rainbow trout bile, and showed different cell surface hydrophobicity (37.93-58.52 %). The wild-type NisZ-producer L. cremoris WA2-67 and its non-bacteriocinogenic mutant L. cremoris WA2-67 ∆nisZ were administered orally (10(6) CFU/g) to rainbow trout for 21 days and, subsequently, fish were challenged with L. garvieae CLG4 by the cohabitation method. The fish fed with the bacteriocinogenic strain L. cremoris WA2-67 reduced significantly (p < 0.01) the mortality (20 %) compared to the fish treated with its non-bacteriocinogenic knockout isogenic mutant (50 %) and the control (72.5 %). We demonstrated the effectiveness of L. cremoris WA2-67 to protect rainbow trout against infection with the invasive pathogen L. garvieae and the relevance of NisZ production as an anti-infective mechanism. This is the first report demonstrating the effective in vivo role of LAB bacteriocin (NisZ) production as a mechanism to protect fish against bacterial infection. Our results suggest that the wild-type NisZ-producer strain L. cremoris WA2-67 could be used in fish farming to prevent lactococcosis in rainbow trout.

  16. A Novel Offset Cancellation Based on Parasitic-Insensitive Switched-Capacitor Sensing Circuit for the Out-of-Plane Single-Gimbaled Decoupled CMOS-MEMS Gyroscope

    PubMed Central

    Chang, Ming-Hui; Huang, Han-Pang

    2013-01-01

    This paper presents a novel parasitic-insensitive switched-capacitor (PISC) sensing circuit design in order to obtain high sensitivity and ultra linearity and reduce the parasitic effect for the out-of-plane single-gimbaled decoupled CMOS-MEMS gyroscope (SGDG). According to the simulation results, the proposed PISC circuit has better sensitivity and high linearity in a wide dynamic range. Experimental results also show a better performance. In addition, the PISC circuit can use signal processing to cancel the offset and noise. Thus, this circuit is very suitable for gyroscope measurement. PMID:23493122

  17. Extending ALFALFA in the Direction of the Pisces-Perseus Supercluster with the Arecibo L-Band Wide Receiver

    NASA Astrophysics Data System (ADS)

    O'Donoghue, Aileen A.; Haynes, Martha P.; Koopmann, Rebecca A.; Jones, Michael G.; Hallenbeck, Gregory L.; Giovanelli, Riccardo; Hoffman, Lyle; Craig, David W.; Undergraduate ALFALFA Team

    2017-01-01

    We have completed three “Harvesting ALFALFA” Arecibo observing programs in the direction of the Pisces-Perseus Supercluster (PPS) since ALFALFA observations were finished in 2012. The first was to perform follow-up observations on high signal-to-noise (S/N > 6.5) ALFALFA detections needing confirmation and low S/N sources lacking optical counterparts. A few more high S/N objects were observed in the second program along with targets visually selected from the Sloan Digital Sky Survey (SDSS). The third program included low S/N ALFALFA sources having optical counterparts with redshifts that were unknown or differed from the ALFALFA observations. It also included more galaxies selected from SDSS by eye and by Structured Query Language (SQL) searches with parameters intended to select galaxies at the distance of the PPS (~6,000 km/s). We used pointed basic Total-Power Position-Switched Observations in the 1340 - 1430 MHz ALFALFA frequency range. For sources of known redshift, we used the Wideband Arecibo Pulsar Processors (WAPP’s) , while for sources of unknown redshift we utilized a hybrid/dual bandwidth Doppler tracking mode using the Arecibo Interim 50-MHz Correlator with 9-level sampling.Results confirmed that a few high S/N ALFALFA sources are spurious as expected from the work of Saintonge (2007), low S/N ALFALA sources lacking an optical counterpart are all likely to be spurious, but low S/N sources with optical counterparts are generally reliable. Of the optically selected sources, about 80% were detected and tended to be near the distance of the PPS.This work has been supported by NSF grant AST-1211005.

  18. 50 CFR 660.402 - Definitions.

    Code of Federal Regulations, 2013 CFR

    2013-10-01

    ... Sockeye (red) salmon, Oncorhynchus nerka Steelhead (rainbow trout), Oncorhynchus mykiss Total length of... anadromous species of the family Salmonidae and genus Oncorhynchus, commonly known as Pacific salmon, including, but not limited to: Chinook (king) salmon, Oncorhynchus tshawytscha Coho (silver) salmon...

  19. 50 CFR 660.402 - Definitions.

    Code of Federal Regulations, 2012 CFR

    2012-10-01

    ... (dog) salmon, Oncorhynchus keta Sockeye (red) salmon, Oncorhynchus nerka Steelhead (rainbow trout... Region, NMFS. Salmon means any anadromous species of the family Salmonidae and genus Oncorhynchus, commonly known as Pacific salmon, including, but not limited to: Chinook (king) salmon, Oncorhynchus...

  20. 50 CFR 660.402 - Definitions.

    Code of Federal Regulations, 2014 CFR

    2014-10-01

    ... Sockeye (red) salmon, Oncorhynchus nerka Steelhead (rainbow trout), Oncorhynchus mykiss Total length of... anadromous species of the family Salmonidae and genus Oncorhynchus, commonly known as Pacific salmon, including, but not limited to: Chinook (king) salmon, Oncorhynchus tshawytscha Coho (silver) salmon...

  1. Titre distribution patterns of infectious haematopoietic necrosis virus in ovarian fluids of hatchery and feral salmon populations

    USGS Publications Warehouse

    Mulcahy, D.; Pascho, R.J.; Jenes, C.K.

    1983-01-01

    Infectious haematopoietic mecrosis virus (IHNV) is enzootic in virtually all populations of sockeye salmon, Oncorhynchus nerka (Walbaum), and in populations of chinook salmon, O. tshawytscha (Walbaum), of the Sacramento River drainage in California. This disease is an obstacle in hatcheries using brood stocks from these populations. However, naturally spawning sockeye salmon are highly successful and are the most important commercially fished salmon species in the United States. Most of the commercial landings of sockeye salmon are of feral fish originating in Alaska. The success of natural populations of salmon in which IHNV is enzootic, and the recurrent outbreaks of the disease in hatchery fish, led us to compare IHNW prevalence rates in hatchery and feral salmon populations.

  2. Polyphasic characterization of Aeromonas salmonicida isolates recovered from salmonid and non-salmonid fish

    USGS Publications Warehouse

    Diamanka, A.; Loch, T.P.; Cipriano, R.C.; Faisal, M.

    2013-01-01

    Michigan's fisheries rely primarily upon the hatchery propagation of salmonid fish for release in public waters. One limitation on the success of these efforts is the presence of bacterial pathogens, including Aeromonas salmonicida, the causative agent of furunculosis. This study was undertaken to determine the prevalence of A. salmonicida in Michigan fish, as well as to determine whether biochemical or gene sequence variability exists among Michigan isolates. A total of 2202 wild, feral and hatchery-propagated fish from Michigan were examined for the presence of A. salmonicida. The examined fish included Chinook salmon, Oncorhynchus tshawytscha (Walbaum), coho salmon, O. kisutcha (Walbaum), steelhead trout, O. mykiss (Walbaum), Atlantic salmon, Salmo salar L., brook trout, Salvelinus fontinalis (Mitchill), and yellow perch, Perca flavescens (Mitchill). Among these, 234 fish yielded a brown pigment-producing bacterium that was presumptively identified as A. salmonicida. Further phenotypic and phylogenetic analyses identified representative isolates as Aeromonas salmonicida subsp. salmonicida and revealed some genetic and biochemical variability. Logistic regression analyses showed that infection prevalence varied according to fish species/strain, year and gender, whereby Chinook salmon and females had the highest infection prevalence. Moreover, this pathogen was found in six fish species from eight sites, demonstrating its widespread nature within Michigan.

  3. Near-infrared observations of galaxies in Pisces-Perseus. I. vec H-band surface photometry of 174 spiral

    NASA Astrophysics Data System (ADS)

    Moriondo, G.; Baffa, C.; Casertano, S.; Chincarini, G.; Gavazzi, G.; Giovanardi, C.; Hunt, L. K.; Pierini, D.; Sperandio, M.; Trinchieri, G.

    1999-05-01

    We present near-infrared, H-band (1.65 $() μm), surface photometry of 174 spiral galaxies in the area of the Pisces-Perseus supercluster. The images, acquired with the ARNICA camera mounted on various telescopes, are used to derive radial profiles of surface brightness, ellipticities, and position angles, together with global parameters such as H-band magnitudes and diameters Radial profiles in tabular form and images FITS files are also available upon request from gmorio@arcetri.astro.it.}. The mean relation between H-band isophotal diameter D_{21.5} and the B-band D25 implies a B-H color of the outer disk bluer than 3.5; moreover, D_{21.5}/D25 depends on (global) color and absolute luminosity. The correlations among the various photometric parameters suggest a ratio between isophotal radius D_{21.5}/2 and disk scale length of ~ m3.5 and a mean disk central brightness ~ meq 17.5 H-mag arcsec^{-2}. We confirm the trend of the concentration index C31$ with absolute luminosity and, to a lesser degree, with morphological type. We also assess the influence of non-axisymmetric structures on the radial profiles and on the derived parameters. Based on observations at the TIRGO, NOT, and VATT telescopes. TIRGO (Gornergrat, CH) is operated by CAISMI-CNR, Arcetri, Firenze. NOT (La Palma, Canary Islands) is operated by NOTSA, the Nordic Observatory Scientific Association. VATT (Mt. Graham, Az) is operated by VORG, the Vatican Observatory Research Group Table 3 and Fig. 4 are only available in electronic form at the CDS via anonymous ftp to cdsarc.u-strasbg.fr (130.79.128.5) or via http://cdsweb.u-strasbg.fr/Abstract.html.

  4. M-X Environmental Technical Report. Environmental Characteristics of Alternative Designated Deployment Areas, Aquatic Habitats and Biota.

    DTIC Science & Technology

    1980-12-22

    fish in Nevada and Utah. COMMON NAME SCIENTIFIC NAME NEVADA UTAH SALMON, TROUT, GRAYLING & WHITEFISH Family SALMONIDAE King Salmon Oncorhynchus ...tsawytscha X Kokanee Red Salmon 0. nerka kennalyi I X X Lake Trout Salvelinus namayeush X Brook Trout S. fontinalis X Dolly Varden Trout S. malma X

  5. Sperm motility in fishes. (II) Effects of ions and osmolality: a review.

    PubMed

    Alavi, Sayyed Mohammad Hadi; Cosson, Jacky

    2006-01-01

    The spermatozoa of most fish species are immotile in the testis and seminal plasma. Therefore, motility is induced after the spermatozoa are released into the aqueous environment during natural reproduction or into the diluent during artificial reproduction. There are clear relationships between seminal plasma composition and osmolality and the duration of fish sperm motility. Various parameters such as ion concentrations (K+, Na+, and Ca2+), osmotic pressure, pH, temperature and dilution rate affect motility. In the present paper, we review the roles of these ions on sperm motility in Salmonidae, Cyprinidae, Acipenseridae and marine fishes, and their relationship with seminal plasma composition. Results in the literature show that: 1. K+ is a key ion controlling sperm motility in Salmonidae and Acipenseridae in combination with osmotic pressure; this control is more simple in other fish species: sperm motility is prevented when the osmotic pressure is high (Cyprinidae) or low (marine fishes) compared to that of the seminal fluid. 2. Cations (mostly divalent, such as Ca2+) are antagonistic with the inhibitory effect of K+ on sperm motility. 3. In many species, Ca2+ influx and K+ or Na+ efflux through specific ionic channels change the membrane potential and eventually lead to an increase in cAMP concentration in the cell, which constitutes the initiation signal for sperm motility in Salmonidae. 4. Media that are hyper- and hypo-osmotic relative to seminal fluid trigger sperm motility in marine and freshwater fishes, respectively. 5. The motility of fish spermatozoa is controlled through their sensitivity to osmolality and ion concentrations. This phenomenon is related to ionic channel activities in the membrane and governs the motility mechanisms of axonemes.

  6. Cold-water fishes and climate change in North America

    Treesearch

    J. E. Williams; Daniel Isaak; J. Imhof; D. A. Hendrickson; J. R. McMillan

    2015-01-01

    Trout, salmon, grayling and whitefishes (Salmonidae) are among the most ecologically and economically important fishes. They also are among the most vulnerable to global warming, and increasing drought, floods, and wildfires. In North America, salmonids occur from central Mexico northward along coastal regions and mountainous interiors to the Arctic Plains. A...

  7. 50 CFR 16.3 - General restrictions.

    Code of Federal Regulations, 2010 CFR

    2010-10-01

    ... wildlife or eggs thereof, or dead fish or eggs or salmonids of the fish family Salmonidae into the United States or its territories or possessions is deemed to be injurious or potentially injurious to the health... into or the transportation of live wildlife or eggs thereof between the continental United States, the...

  8. Infrared Quenched Photoinduced Superconductivity

    NASA Astrophysics Data System (ADS)

    Federici, J. F.; Chew, D.; Guttierez-Solana, J.; Molina, G.; Savin, W.; Wilber, W.

    1996-03-01

    Persistant photoconductivity (PPC) and photoinduced superconductivity (PISC) in oxygen deficient YBa_2Cu_3O_6+x have received recent attention. It has been suggested that oxygen vacancy defects play an important role in the PISC/PPC mechanism.(J. F. Federici, D. Chew, B. Welker, W. Savin, J. Gutierrez-Solana, and T. Fink, Phys. Rev. B), December 1995 Supported by National Science Foundation In this model, defects trap photogenerated electrons so that electron-hole recombination can not occur thereby allowing photogenerated holes to contribute to the carrier density. Nominally, the photoinduced state is long-lived, persisting for days at low temperature. Experiment results will be presented demonstrating that the photoinduced superconductivity state can be quenched using infrared radiation. Implications for the validity of the PISC/PCC defect model will be discussed.

  9. Expanding the Planetary Analog Test Sites in Hawaii - Planetary Basalt Manipulation

    NASA Astrophysics Data System (ADS)

    Kelso, R.

    2013-12-01

    The Pacific International Space Center for Exploration Systems (PISCES) is one of the very few planetary surface research test sites in the country that is totally funded by the state legislature. In recent expansions, PISCES is broadening its work in planetary test sites to include much more R&D work in the planetary surface systems, and the manipulation of basalt materials. This is to include laser 3D printing of basalt, 'lunar-concrete' construction in state projects for Hawaii, renewable energy, and adding lava tubes/skylights to their mix of high-quality planetary analog test sites. PISCES Executive Director, Rob Kelso, will be providing program updates on the interest of the Hawaii State Legislature in planetary surface systems, new applied research initiatives in planetary basalts and interests in planetary construction.

  10. STABLE ISOPTOPE RATIOS IN ARCHIVED STRIPED BASS SCALES SUGGEST CHANGES IN TROPHIC STRUCTURE

    EPA Science Inventory

    Stable carbon isotope ratios were measured in archived striped bass, Morone saxatilis (Walbaum), scales to identify changes in the feeding behaviour of this species over time. Striped bass tissue and scale samples were collected from Rhode Island coastal waters during 1996 and ar...

  11. Potential mechanisms of attenuation for rifampicin-passaged strains of Flavobacterium psychrophilum

    USDA-ARS?s Scientific Manuscript database

    Background: Flavobacterium psychrophilum is the etiologic agent of bacterial coldwater disease in salmonids. Earlier research showed that a rifampicin-passaged strain of F. psychrophilum (CSF 259-93B 17) caused no disease in rainbow trout (Oncorhynchus mykiss, Walbaum) while inducing a protective im...

  12. A campaign to end animal testing: introducing the PETA International Science Consortium Ltd.

    PubMed

    Stoddart, Gilly; Brown, Jeffrey

    2014-12-01

    The successful development and validation of non-animal techniques, or the analysis of existing data to satisfy regulatory requirements, provide no guarantee that this information will be used in place of animal experiments. In order to advocate for the replacement of animal-based testing requirements, the PETA International Science Consortium Ltd (PISC) liaises with industry, regulatory and research agencies to establish and promote clear paths to validation and regulatory use of non-animal techniques. PISC and its members use an approach that identifies, promotes and verifies the implementation of good scientific practices in place of testing on animals. Examples of how PISC and its members have applied this approach to minimise the use of animals for the Registration, Evaluation, Authorisation and Restriction of Chemicals regulation in the EU and testing of cosmetics on animals in India, are described. 2014 FRAME.

  13. Flagellar regulation in Yersinia ruckeri during infection

    USDA-ARS?s Scientific Manuscript database

    The gram-negative Enterobacterium Yersinia ruckeri is the etiologic agent of enteric redmouth disease (ERM), a septicemia affecting primarily farmed rainbow trout (Oncorhynchus mykiss, Walbaum). Over the past decade, there has been an increase in the prevalence of non-motile variants of Y. ruckeri a...

  14. Enhanced efficacy of an attenuated Flavobacterium psychrophilum strain cultured under iron-limited conditions

    USDA-ARS?s Scientific Manuscript database

    An attenuated strain of Flavobacterium psychrophilum (CSF259-93B.17) has shown potential as a vaccine for prevention of bacterial coldwater disease (BCWD) in rainbow trout, Oncorhynchus mykiss (Walbaum). Because BCWD outbreaks can result in high mortality in other salmonid species, specifically coho...

  15. Flagella biosynthesis and regulation by the Rcs pathway within the fish pathogen Yersinia ruckeri during infection

    USDA-ARS?s Scientific Manuscript database

    The gram-negative Enterobacterium Yersinia ruckeri is the etiologic agent of enteric redmouth disease (ERM) within farmed rainbow trout (Oncorhynchus mykiss, Walbaum). Over the past decade, there has been an increase in the prevalence of non-motile variants of Y. ruckeri and the appearance of these ...

  16. Regulation of flagellum biosynthesis within the fish pathogen Yersinia ruckeri

    USDA-ARS?s Scientific Manuscript database

    Yersinia ruckeri, a Gram negative Enterobacterium, is the causative agent of enteric red mouth disease (ERM) within farmed rainbow trout (Oncorhynchus mykiss, Walbaum). There has been an increase of ERM outbreaks in previously vaccinated trout caused by a recently emerged, non-motile variant of Y. r...

  17. Measuring helium bubble diameter distributions in tungsten with grazing incidence small angle x-ray scattering (GISAXS)

    NASA Astrophysics Data System (ADS)

    Thompson, M.; Kluth, P.; Doerner, R. P.; Kirby, N.; Riley, D.; Corr, C. S.

    2016-02-01

    Grazing incidence small angle x-ray scattering was performed on tungsten samples exposed to helium plasma in the MAGPIE and Pisces-A linear plasma devices to measure the size distributions of resulting helium nano-bubbles. Nano-bubbles were fitted assuming spheroidal particles and an exponential diameter distribution. These particles had mean diameters between 0.36 and 0.62 nm. Pisces-A exposed samples showed more complex patterns, which may suggest the formation of faceted nano-bubbles or nano-scale surface structures.

  18. Assessing the potential for rainbow trout reproduction in tributaries of the Mountain Fork River below Broken Bow Dam, southeastern Oklahoma

    Treesearch

    James M. Long; Trevor A. Starks; Tyler Farling; Robert Bastarache

    2016-01-01

    Stocked trout (Salmonidae) in reservoir tailwater systems in the Southern United States have been shown to use tributary streams for spawning and rearing. The lower Mountain Fork of the Little River below Broken Bow Dam is one of two year-round tailwater trout fisheries in Oklahoma, and the only one with evidence of reproduction by stocked rainbow trout (Oncorhynchus...

  19. Pisces

    NASA Astrophysics Data System (ADS)

    Murdin, P.

    2000-11-01

    (the Fishes; abbrev. Psc, gen. Piscium; area 889 sq. deg.) A northern zodiacal constellation which lies between Pegasus and Cetus, and culminates at midnight in late September. Its origin dates back to Babylonian times and it is said to represent Aphrodite, the goddess of love in Greek mythology, and her son Eros, who jumped into the Euphrates to escape from the multi-headed Typhon and were turned...

  20. Development of the Drosophila entero-endocrine lineage and its specification by the Notch signaling pathway

    PubMed Central

    Takashima, Shigeo; Adams, Katrina L.; Ortiz, Paola A.; Ying, Chong T.; Moridzadeh, Rameen; Younossi-Hartenstein, Amelia; Hartenstein, Volker

    2013-01-01

    In this paper we have investigated the developmental-genetic steps that shape the entero-endocrine system of Drosophila melanogaster from the embryo to the adult. The process starts in the endoderm of the early embryo where precursors of endocrine cells and enterocytes of the larval midgut, as well as progenitors of the adult midgut, are specified by a Notch signaling-dependent mechanism. In a second step that occurs during the late larval period, enterocytes and endocrine cells of a transient pupal midgut are selected from within the clusters of adult midgut progenitors. As in the embryo, activation of the Notch pathway triggers enterocyte differentiation, and inhibits cells from further proliferation or choosing the endocrine fate. The third step of entero-endocrine cell development takes place at a mid-pupal stage. Before this time point, the epithelial layer destined to become the adult midgut is devoid of endocrine cells. However, precursors of the intestinal midgut stem cells (pISCs) are already present. After an initial phase of symmetric divisions which causes an increase in their own population size, pISCs start to spin off cells that become postmitotic and express the endocrine fate marker, Prospero. Activation of Notch in pISCs forces these cells into an enterocyte fate. Loss of Notch function causes an increase in the proliferatory activity of pISCs, as well as a higher ratio of Prospero-positive cells. PMID:21382366

  1. Climate change, fish, and aquatic habitat in the Blue Mountains [Chapter 5

    Treesearch

    Daniel J. Isaak; Katherine Ramsey; John C. Chatel; Deborah L. Konnoff; Robert A. Gecy; Dona Horan

    2017-01-01

    National Forest System lands in the Blue Mountains region support a diversity of important native aquatic species that will be affected by climate change. As part of the Blue Mountains Adaptation Partnership, four of these species (spring Chinook salmon (Oncorhynchus tshawytscha Walbaum in Artedi), bull trout (Salvelinus confluentus Suckley), summer steelhead (O....

  2. Persistent effects of wildfire and debris flows on the invertebrate prey base of rainbow trout in Idaho streams

    Treesearch

    Amanda E. Rosenberger; Jason B. Dunham; John M. Buffington; Mark S. Wipfli

    2011-01-01

    Wildfire and debris flows are important physical and ecological drivers in headwater streams of western North America. Past research has primarily examined short-term effects of these disturbances; less is known about longer-term impacts. We investigated wildfire effects on the invertebrate prey base for drift-feeding rainbow trout (Oncorhynchus mykiss, Walbaum) in...

  3. A language comparison for scientific computing on MIMD architectures

    NASA Technical Reports Server (NTRS)

    Jones, Mark T.; Patrick, Merrell L.; Voigt, Robert G.

    1989-01-01

    Choleski's method for solving banded symmetric, positive definite systems is implemented on a multiprocessor computer using three FORTRAN based parallel programming languages, the Force, PISCES and Concurrent FORTRAN. The capabilities of the language for expressing parallelism and their user friendliness are discussed, including readability of the code, debugging assistance offered, and expressiveness of the languages. The performance of the different implementations is compared. It is argued that PISCES, using the Force for medium-grained parallelism, is the appropriate choice for programming Choleski's method on the multiprocessor computer, Flex/32.

  4. A survey of sport fish use on the Copper River Delta, Alaska.

    Treesearch

    Dirk W. Lang

    2010-01-01

    Aerial counts, in-person interviews, and mail-in questionnaires were used to survey sport fish use during the coho salmon (Oncorhynchus kisutch Walbaum) season on the Copper River Delta, Alaska from 2002 through 2006. Angler counts provided an index of use on individual streams and were used to develop a spatial database exhibiting patterns of use...

  5. Mission Accomplished: Deep Submergence Science Routinely Supported Using Multiple Vehicles Throughout the Hawaii Undersea Research Laboratory's 2005 South Pacific Expedition

    NASA Astrophysics Data System (ADS)

    Kerby, T.; Smith, J. R.; Shackelford, R.; Wiltshire, J. C.; Malahoff, A.

    2005-12-01

    The Hawaii Undersea Research Laboratory (HURL) recently completed an internationally partnered 5-month, 14,500 nautical mile multiple leg expedition to the South Pacific that included 21 study sites in the waters of American Samoa, New Zealand, Tonga, and the U.S. Line Islands to commemorate its 25th anniversary of supporting deep submergence science in the Pacific Ocean. During this voyage, HURL successfully operated its two human occupied vehicles ( Pisces IV and Pisces V) each capable of diving to 2000 m from their support ship, the R/V Ka'imikai-o-Kanaloa ( KoK). In addition, a remotely operated vehicle ( RCV-150) with a nearly 1000-m depth limit was utilized alternately with the Pisces HOV's. The size and organized placement of these vehicles on the compact but efficiently run KoK (70-m length, 2000-tons displacement, 14 crew) allowed for deployment of a CTD rosette system and recovery of instrument package moorings during the same cruise leg. The Pisces submersibles are 20-ft long, 13-ton, 3-person vehicles with 7-10 hours duration, up to 350-lb payload capacities, and three forward looking viewports. The small size of the Pisces' relative to much larger deeper diving HOV's increases their agility, thus allowing maneuvering into more difficult sampling site terrain. The smaller package also facilitates rapid launch (8 min avg, stdev=1) and recovery (12 min avg, stdev=2) in heavier seas (up to sea state 5), as routinely experienced in the South Pacific during the austral winter. In addition to the enhanced safety aspect of having two compatible submersibles aboard, scientific efficiency has benefited by allowing the rotation of vehicles on extended deployments prior to battery servicing, thus maintaining an overall dive time average of 7.1 hr (stdev=1.52) for an average dive depth of 891 m (stdev=431) in 2005. Having the two fully operational submersibles also provides a contingency for equipment malfunction while on site that saved 7 dive days in 2005 alone

  6. Development of a longitudinal integrated clerkship at an academic medical center

    PubMed Central

    Poncelet, Ann; Bokser, Seth; Calton, Brook; Hauer, Karen E.; Kirsch, Heidi; Jones, Tracey; Lai, Cindy J.; Mazotti, Lindsay; Shore, William; Teherani, Arianne; Tong, Lowell; Wamsley, Maria; Robertson, Patricia

    2011-01-01

    In 2005, medical educators at the University of California, San Francisco (UCSF), began developing the Parnassus Integrated Student Clinical Experiences (PISCES) program, a year-long longitudinal integrated clerkship at its academic medical center. The principles guiding this new clerkship were continuity with faculty preceptors, patients, and peers; a developmentally progressive curriculum with an emphasis on interdisciplinary teaching; and exposure to undiagnosed illness in acute and chronic care settings. Innovative elements included quarterly student evaluation sessions with all preceptors together, peer-to-peer evaluation, and oversight advising with an assigned faculty member. PISCES launched with eight medical students for the 2007/2008 academic year and expanded to 15 students for 2008/2009. Compared to UCSF's traditional core clerkships, evaluations from PISCES indicated significantly higher student satisfaction with faculty teaching, formal didactics, direct observation of clinical skills, and feedback. Student performance on discipline-specific examinations and United States Medical Licensing Examination step 2 CK was equivalent to and on standardized patient examinations was slightly superior to that of traditional peers. Participants' career interests ranged from primary care to surgical subspecialties. These results demonstrate that a longitudinal integrated clerkship can be implemented successfully at a tertiary care academic medical center. PMID:21475642

  7. Development of a longitudinal integrated clerkship at an academic medical center.

    PubMed

    Poncelet, Ann; Bokser, Seth; Calton, Brook; Hauer, Karen E; Kirsch, Heidi; Jones, Tracey; Lai, Cindy J; Mazotti, Lindsay; Shore, William; Teherani, Arianne; Tong, Lowell; Wamsley, Maria; Robertson, Patricia

    2011-04-04

    In 2005, medical educators at the University of California, San Francisco (UCSF), began developing the Parnassus Integrated Student Clinical Experiences (PISCES) program, a year-long longitudinal integrated clerkship at its academic medical center. The principles guiding this new clerkship were continuity with faculty preceptors, patients, and peers; a developmentally progressive curriculum with an emphasis on interdisciplinary teaching; and exposure to undiagnosed illness in acute and chronic care settings. Innovative elements included quarterly student evaluation sessions with all preceptors together, peer-to-peer evaluation, and oversight advising with an assigned faculty member. PISCES launched with eight medical students for the 2007/2008 academic year and expanded to 15 students for 2008/2009. Compared to UCSF's traditional core clerkships, evaluations from PISCES indicated significantly higher student satisfaction with faculty teaching, formal didactics, direct observation of clinical skills, and feedback. Student performance on discipline-specific examinations and United States Medical Licensing Examination step 2 CK was equivalent to and on standardized patient examinations was slightly superior to that of traditional peers. Participants' career interests ranged from primary care to surgical subspecialties. These results demonstrate that a longitudinal integrated clerkship can be implemented successfully at a tertiary care academic medical center.

  8. Species Profiles: Life Histories and Environmental Requirements of Coastal Fishes and Invertebrates (Pacific Northwest), Chum Salmon

    DTIC Science & Technology

    1988-03-01

    respect, they are considerably unlike (J. Ames, 1984, WDF; pers. comm.). In sockeye, Oncorhynchus nerka , coho, Southern British Columbia, the average...NOMENCLATURE/TAXONOMY/RANGE MORPHOLOGY/IDENTIFICATION AIDS Scientific name.. Oncorhynchus keta Dorsal fin 10-13 rays; adipose . (Walbaum 1792) (Figure 1) fin... Oncorhynchus gorbuscha, spend minimal salmon that spawn in large river 1, time rearing in freshwater. In this systems is sometimes twice that long f

  9. Species Profiles: Life Histories and Environmental Requirements of Coastal Fishes and Invertebrates (Pacific Northwest) Pink Salmon

    DTIC Science & Technology

    1989-01-01

    methodology weight in the sockeye salmon for determining instream flow re- ( Oncorhynchus nerka ) and the pink quirements for fish. Pages 72-86 in salmon (0...Scientific name ........... Oncorhynchus jor pink salmon runs. Migration gorbuscha (Walbaum) (Figure a patterns of fish entering British Preferred...A dominant male guards the considered the most specialized of the female during the digging process, salmon in the genus Oncorhynchus be- attacking

  10. HPLC Quantification of astaxanthin and canthaxanthin in Salmonidae eggs.

    PubMed

    Tzanova, Milena; Argirova, Mariana; Atanasov, Vasil

    2017-04-01

    Astaxanthin and canthaxanthin are naturally occurring antioxidants referred to as xanthophylls. They are used as food additives in fish farms to improve the organoleptic qualities of salmonid products and to prevent reproductive diseases. This study reports the development and single-laboratory validation of a rapid method for quantification of astaxanthin and canthaxanthin in eggs of rainbow trout (Oncorhynchus mykiss) and brook trout (Salvelinus fontinalis М.). An advantage of the proposed method is the perfect combination of selective extraction of the xanthophylls and analysis of the extract by high-performance liquid chromatography and photodiode array detection. The method validation was carried out in terms of linearity, accuracy, precision, recovery and limits of detection and quantification. The method was applied for simultaneous quantification of the two xanthophylls in eggs of rainbow trout and brook trout after their selective extraction. The results show that astaxanthin accumulations in salmonid fish eggs are larger than those of canthaxanthin. As the levels of these two xanthophylls affect fish fertility, this method can be used to improve the nutritional quality and to minimize the occurrence of the M74 syndrome in fish populations. Copyright © 2016 John Wiley & Sons, Ltd.

  11. Piscine reovirus in wild and farmed salmonids in British Columbia, Canada: 1974-2013.

    PubMed

    Marty, G D; Morrison, D B; Bidulka, J; Joseph, T; Siah, A

    2015-08-01

    Piscine reovirus (PRV) was common among wild and farmed salmonids in British Columbia, western Canada, from 1987 to 2013. Salmonid tissues tested for PRV by real-time rRT-PCR included sections from archived paraffin blocks from 1974 to 2008 (n = 363) and fresh-frozen hearts from 2013 (n = 916). The earliest PRV-positive sample was from a wild-source steelhead trout, Oncorhynchus mykiss (Walbaum), from 1977. By histopathology (n = 404), no fish had lesions diagnostic for heart and skeletal muscle inflammation (HSMI). In some groups, lymphohistiocytic endocarditis affected a greater proportion of fish with PRV than fish without PRV, but the range of Ct values among affected fish was within the range of Ct values among unaffected fish. Also, fish with the lowest PRV Ct values (18.4-21.7) lacked endocarditis or any other consistent lesion. From 1987 to 1994, the proportion of PRV positives was not significantly different between farmed Atlantic salmon, Salmo salar L. (44% of 48), and wild-source salmonids (31% of 45). In 2013, the proportion of PRV positives was not significantly different between wild coho salmon, Oncorhynchus kisutch (Walbaum), sampled from British Columbia (5.0% of 60) or the reference region, Alaska, USA (10% of 58). © 2014 John Wiley & Sons Ltd.

  12. Assessment of the Fishery Improvement Opportunities on the Pend Oreille River, 1988 Annual Report.

    DOE Office of Scientific and Technical Information (OSTI.GOV)

    Barber, Michael R.; Willms, Roger A.; Scholz, Allan T.

    1989-10-01

    The purpose of this study is to assess the fishery improvement opportunities on the Box Canyon portion of the Pend Oreille River. This report contains the findings of the first year of the study. Chinook salmon (Oncorhynchus tshawytscha (Walbaum)) and steelhead (Oncorhynchus mykiss (Richardson)) were present in the Pend Oreille River prior to the construction of Grand Coulee Dam. The river also contained native cutthroat trout (Oncorhynchus clarki (Richardson)), bull trout (Salvelinus confluentus (Walbaum)) and mountain whitefish (Prosopium williamsoni (Girard)). Rainbow trout were planted in the river and some grew to lengths in excess of 30 inches. With the constructionmore » of Box Canyon Dam, in 1955, the most productive section of the river was inundated. Following the construction of the dam the trout fishery declined and the populations of spiny ray fish and rough fish increased. The objectives of the first year of the study were to determine the relative abundance of each species in the river and sloughs; the population levels in fish in the river and four selected tributaries; fish growth rates; the feeding habits and abundance of preferred prey; the migration patterns; and the total fishing pressure, catch per unit effort, and total harvest by conducting a year-round creel survey. 132 refs.« less

  13. Molecular testing of adult Pacific salmon and trout (Oncorhynchus spp.) for several RNA viruses demonstrates widespread distribution of piscine orthoreovirus in Alaska and Washington

    USGS Publications Warehouse

    Purcell, Maureen; Thompson, Rachel L.; Evered, Joy; Kerwin, John; Meyers, Ted R.; Stewart, Bruce; Winton, James

    2018-01-01

    This research was initiated in conjunction with a systematic, multiagency surveillance effort in the United States (U.S.) in response to reported findings of infectious salmon anaemia virus (ISAV) RNA in British Columbia, Canada. In the systematic surveillance study reported in a companion paper, tissues from various salmonids taken from Washington and Alaska were surveyed for ISAV RNA using the U.S.-approved diagnostic method, and samples were released for use in this present study only after testing negative. Here, we tested a subset of these samples for ISAV RNA with three additional published molecular assays, as well as for RNA from salmonid alphavirus (SAV), piscine myocarditis virus (PMCV) and piscine orthoreovirus (PRV). All samples (n = 2,252; 121 stock cohorts) tested negative for RNA from ISAV, PMCV, and SAV. In contrast, there were 25 stock cohorts from Washington and Alaska that had one or more individuals test positive for PRV RNA; prevalence within stocks varied and ranged from 2% to 73%. The overall prevalence of PRV RNA-positive individuals across the study was 3.4% (77 of 2,252 fish tested). Findings of PRV RNA were most common in coho (Oncorhynchus kisutch Walbaum) and Chinook (O. tshawytscha Walbaum) salmon.

  14. [Variability in the relative abundance, size structure and sex ratio of the dolphinfish Coryphaena hippurus (Pisces: Coryphaenidae) in the Gulf of Tehuantepec, México].

    PubMed

    Alejo-Plata, Carmen; Gómez, José Luis; Serrano-Guzmán, Saúl J

    2014-06-01

    Variability in the relative abundance, size structure and sex ratio of the dolphinfish Coryphaena hippurus (Pisces: Coryphaenidae) in the Gulf of Tehuantepec, México. The dolphinfish (Coryphaena hippurus), is an oceanic epipelagic fish found worldwide in tropical and subtropical waters, with a high dispersal capability via large-scale migrations. This fast-swimming top-level predator is abundant in the Gulf of Tehuantepec, where it is caught incidentally by artisanal fisheries, and represents a target species for both recreational and commercial fisheries in Mexico, Ecuador, Peru and Central America. Nowadays, local fishery information on this species is scarce, thus our objective was to analyze the size structure by sex and the catch-per-unit-effort (CPUE) tendency of dolphinfish caught in the Gulf of Tehuantepec, from 2000 to 2007. For this, fishery catches information was obtained from the artisanal fleet, at six landing sites in the Gulf, and the sex ratio, fork length (FL) and the catch per unit effort (CPUE) were estimated. From all sampling sites, a total of 3 494 females, and 3 877 males were obtained, and dolphinfish size as fork length (FL) ranged from 20.5 to 152cm. Fish size ranged from 25.5 to 148cm furcal length (FL) in males, and 20.5 to 129cm FL in females. The sex ratio (males:females) was 1:1, except in April-May (1:1.5, p < 0.05) and November (1:0.5, p < 0.05). The sex ratio at different size classes showed a significant bias towards females at smaller sizes (< 75cm FL), whereas the males were predominant in larger size classes (> 100cm FL). The size structure was bimodal, with a variation in the size average; the modes were defined as the small group (FL = 50-55cm) and the large size group (FL = 100-110cm). The CPUE showed seasonal changes: values were high for the November-December period, and values were lower for July-August. The seasonal and inter annual variation in the abundance of dolphinfish is probably related to a pre

  15. Species Profiles: Life Histories and Environmental Requirements of Coastal Fishes and Invertebrates (Pacific Southwest). Coho Salmon.

    DTIC Science & Technology

    1987-08-01

    through the Scientific name ....... Oncorhynchus Aleutians, and from the Anadyr kisutch (Walbaum) River, U.S.S.R., south to Hokkdido, Preferred common name...Coho salmon (0. nerka ); the low pyloric silmon do not enter the San Joaquin caeca count (k 83) sepdrdtes the coho River. from any Sal-mon except the...Part 9: Coho Blahm. 1986. Food of juvenile salmon in offshore waters. Int. chinook ( Oncorhynchus tshawytscha) North Pac. Fish. Comm. Bull. 16:1- and coho

  16. Born under a bad sign? Astrological sign and suicide ideation.

    PubMed

    Stack, S; Lester, D

    1988-04-01

    This study tests the thesis that the internalization of the traits associated with astrological signs affects suicide ideation. Data are from a national sample (N = 7,508). Only the most negativistic sign of Pisces was significantly associated with suicide ideation.

  17. The Activation of the Rat Insulin Gene II by BETA2 and PDX-1 in Rat Insulinoma Cells Is Repressed by Pax6

    PubMed Central

    Wolf, Gabriele; Hessabi, Behnam; Karkour, Anke; Henrion, Ulrike; Dahlhaus, Meike; Ostmann, Annett; Giese, Bernd; Fraunholz, Martin; Grabarczyk, Piotr; Jack, Robert; Walther, Reinhard

    2010-01-01

    The transcriptional transactivator Pax6 binds the pancreatic islet cell-specific enhancer sequence (PISCES) of the rat insulin I gene. However the human, mouse, and rat insulin gene II promoters do not contain a PISCES element. To analyze the role of Pax6 in those PISCES-less promoters, we investigated its influence on rat insulin gene II expression and included in our studies the main activators: pancreatic and duodenal homeobox protein-1 (PDX-1) and BETA2/E47. Luciferase assays, Northern blots, and RIA were used to study effects of Pax6 overexpression, gel shift and chromatin precipitation assays to study its binding to the DNA, and yeast two-hybrid assays and glutathione S transferase capture assays to investigate its interactions with PDX-1 and BETA2. Finally, glucose-dependent intracellular transport of Pax6 was demonstrated by fluorescence microscopy. Overexpression of Pax6 prevents activation of the rat insulin II gene by BETA2 and PDX-1 and hence suppresses insulin synthesis and secretion. In vitro, Pax6 binds to the A-boxes, thereby blocking binding of PDX-1, and at the same time, its paired domain interacts with BETA2. Fluorescence microscopy demonstrated that the nuclear-cytoplasmic localization of Pax6 and PDX-1 are oppositely regulated by glucose. From the results, it is suggested that at low concentrations of glucose, Pax6 is localized in the nucleus and prevents the activation of the insulin gene by occupying the PDX-1 binding site and by interacting with BETA2. PMID:20943817

  18. [A paradox of a parasite prolonging the life of its host. Pearl mussel can cancel the accelerated aging program in salmon].

    PubMed

    Ziuganov, V V

    2005-01-01

    A unique case is analyzed when the accelerated aging program (progeria) in salmons (Salmonidae) can be canceled by larval parasite of the gills--freshwater pearl mussel Margaritifera margaritifera. As a result, the maximum age of Salmo fishes hosting the mussel can be as high as 13 years. The mollusk-fish system made it possible to demonstrate that the parasite can inhibit aging of the host and stimulate nonspecific resistance to stress, i.e., can control longevity. The mussel proved to increase the resistance to epitheliomata and cutaneous mycoses. The parasite is perceived to neutralize the senile changes in the regulatory system hypothalamus-pituitary-peripheral endocrine glands-hypothalamus of salmon.

  19. Universal Documentation System Handbook. Volume 3. Response Formats and Instructions; Statement of Capability, Program Support Plan/Operations Directive

    DTIC Science & Technology

    1989-08-01

    requesting agency and support agency which are not self -evident within the information content of the PI/SC or which involve deviations from policy; e.g...preparation instructions for Format 1000. RESPOSE ( ) INFOATION( ): Indicate whether each item number documented is a response for support or is

  20. Effect of ELMs on deuterium-loaded-tungsten plasma facing components

    NASA Astrophysics Data System (ADS)

    Umstadter, K. R.; Rudakov, D. L.; Wampler, W.; Watkins, J. G.; Wong, C. P. C.

    2011-08-01

    Prior heat pulse testing of plasma facing components (PFCs) has been completed in vacuum environments without the presence of background plasma. Edge localized modes (ELMs) will not be this kind of isolated event and one should know the effect of a plasma background during these transients. Heat-pulse experiments have been conducted in the PISCES-A device utilizing laser heating in a divertor-like plasma background. Initial results indicate that the erosion of PFCs is enhanced as compared to heat pulse or plasma only tests. To determine if the enhanced erosion effect is a phenomena only witnessed in the laboratory PISCES device, tungsten and graphite samples were exposed to plasmas in the lower divertor of the DIII-D tokamak using the Divertor Material Evaluation System (DiMES). Mass loss analysis indicates that materials that contain significant deuterium prior to experiencing a transient heating event will erode faster than those that have no or little retained deuterium.

  1. Investigation of He-W interactions using DiMES on DIII-D

    NASA Astrophysics Data System (ADS)

    Doerner, R. P.; Rudakov, D. L.; Chrobak, C. P.; Briesemeister, A. R.; Corr, C.; De Temmerman, G.; Kluth, P.; Lasnier, C. J.; McLean, A. G.; Pace, D. C.; Pitts, R. A.; Schmitz, O.; Thompson, M.; Winters, V.

    2016-02-01

    Tungsten button samples were exposed to He ELMing H-mode plasma in DIII-D using 2.3 MW of electron cyclotron heating power. Prior to the exposures, the W buttons were exposed to either He, or D, plasma in PISCES-A for 2000 s at surface temperatures of 225-850 °C to create a variety of surfaces (surface blisters, subsurface nano-bubbles, fuzz). Erosion was spectroscopically measured from each DiMES sample, with the exception of the fuzzy W samples which showed almost undetectable WI emission. Post-exposure grazing incidence small angle x-ray scattering surface analysis showed the formation of 1.5 nm diameter He bubbles in the surface of W buttons after only a single DIII-D (3 s, ˜150 ELMs) discharge, similar to the bubble layer resulting from the 2000 s. exposure in PISCES-A. No surface roughening, or damage, was detected on the samples after approximately 600 ELMs with energy density between 0.04-0.1 MJ m-2.

  2. Hubble Uncovers a Galaxy Pair Coming in from the Wilderness

    NASA Image and Video Library

    2017-12-08

    NASA’s Hubble Space Telescope uncovered two tiny dwarf galaxies that have wandered from a vast cosmic wilderness into a nearby “big city” packed with galaxies. After being idle for billions of years, they are ready to party by starting a firestorm of star birth. Hubble captured the glow of new stars in these small, ancient galaxies, called Pisces A and Pisces B. Observations suggests the galaxies are late bloomers because they have spent most of their existence in the Local Void, a region of the universe sparsely populated with galaxies. The Local Void is roughly 150 million light-years across. Credits: NASA, ESA, and E. Tollerud (STScI) NASA image use policy. NASA Goddard Space Flight Center enables NASA’s mission through four scientific endeavors: Earth Science, Heliophysics, Solar System Exploration, and Astrophysics. Goddard plays a leading role in NASA’s accomplishments by contributing compelling scientific knowledge to advance the Agency’s mission. Follow us on Twitter Like us on Facebook Find us on Instagram

  3. The transcriptomics of ecological convergence between 2 limnetic coregonine fishes (Salmonidae).

    PubMed

    Derome, N; Bernatchez, L

    2006-12-01

    Species living in comparable habitats often display strikingly similar patterns of specialization, suggesting that natural selection can lead to predictable evolutionary changes. Elucidating the genomic basis underlying such adaptive phenotypic changes is a major goal in evolutionary biology. Increasing evidence indicates that natural selection would first modulate gene regulation during the process of population divergence. Previously, we showed that parallel phenotypic adaptations of the dwarf whitefish (Coregonus clupeaformis) ecotype to the limnetic trophic niche involved parallel transcriptional changes at the same genes involved in muscle contraction and energetic metabolism relative to the sympatric normal ecotype. Here, we tested whether the same genes are also implicated in a limnetic specialist species, the cisco (Coregonus artedi), which is the most likely competitor of dwarf whitefish. Significant upregulation was detected in cisco at the same 6 candidate genes functionally involved in modulating swimming activity, namely 5 variants of a major protein of fast muscle and 1 putative catalytic crystallin enzyme. Moreover, 3 of 5 variants and the same putative catalytic crystallin enzyme were upregulated in cisco relative to the dwarf ecotype, indicating a greater physiological potential of the former for exploiting the limnetic trophic niche. This study provides the first empirical evidence that recent, parallel phenotypic evolution toward the use of the same ecological niche occupied by a specialist competitor involved similar adaptive changes in expression at the same genes. As such, this study provides strong support to the general hypothesis that directional selection acting on gene regulation may promote rapid phenotypic divergence and ultimately speciation.

  4. A Quantitative Analysis Of Pre-Processing In The Coma And Perseus-Pisces Superclusters Using Galex And Wise Survey Data

    NASA Astrophysics Data System (ADS)

    Yun, Min

    transformation are still being debated, but the overwhelming evidence has shown that spirals are readily altered in groups or cluster outskirts prior to falling into a galaxy cluster (pre-processing). This implies that the best approach to catch galaxy transformation in the act is to examine galaxies in lower density environments. A complete accounting of star-formation activity for galaxies over a wide range masses and environments is needed to assess which of many possible mechanisms is the dominant cause of galaxy transformation in over-dense regions. The main goal of this proposed study is to examine the SF and quenching activities associated with galaxies using the high spatial resolution of the targeted studies of individual clusters, but covering much larger areas and density ranges (from voids to cluster cores) with the sample statistics approaching those of the cosmological surveys such as COSMOS, using exquisite stellar mass and SFR (both UV and IR) sensitivity. To achieve this, we propose a multi-wavelength study (with a specific emphasis on GALEX and WISE) of the two most prominent large scale structures in the local universe: the Coma and Perseus-Pisces Superclusters. The total sample area covers ~3000 sq. degree and contains about 7000 spectroscopically identified galaxies (from SDSS and archival spectra). In addition, we will evaluate the impacts of the high mass and SFR cut employed by deep cosmological surveys by paring down our sample in stellar mass and SFR (and resulting coarse galaxy density estimates) and examine whether any important insights are missed as a result.

  5. Heating Efficiency of Beat Wave Excitation in a Density Gradient,

    DTIC Science & Technology

    1988-02-01

    and Technology, January 1988. PPG-1124 񓟣 Research Highlights in The Pisces Program," R.V. Conn, et al, January 1988. PPG-1125 "Magnetic Fusion ... Energy , vol. 5. Technical Assessement of Critical Issues in the Steady State Operation of Fusion Confinement Devices," D. M. Goebel, Assessment Chairman

  6. The Impact of Variable Phytoplankton Stoichiometry on Projections of Primary Production, Food Quality, and Carbon Uptake in the Global Ocean

    NASA Astrophysics Data System (ADS)

    Kwiatkowski, Lester; Aumont, Olivier; Bopp, Laurent; Ciais, Philippe

    2018-04-01

    Ocean biogeochemical models are integral components of Earth system models used to project the evolution of the ocean carbon sink, as well as potential changes in the physical and chemical environment of marine ecosystems. In such models the stoichiometry of phytoplankton C:N:P is typically fixed at the Redfield ratio. The observed stoichiometry of phytoplankton, however, has been shown to considerably vary from Redfield values due to plasticity in the expression of phytoplankton cell structures with different elemental compositions. The intrinsic structure of fixed C:N:P models therefore has the potential to bias projections of the marine response to climate change. We assess the importance of variable stoichiometry on 21st century projections of net primary production, food quality, and ocean carbon uptake using the recently developed Pelagic Interactions Scheme for Carbon and Ecosystem Studies Quota (PISCES-QUOTA) ocean biogeochemistry model. The model simulates variable phytoplankton C:N:P stoichiometry and was run under historical and business-as-usual scenario forcing from 1850 to 2100. PISCES-QUOTA projects similar 21st century global net primary production decline (7.7%) to current generation fixed stoichiometry models. Global phytoplankton N and P content or food quality is projected to decline by 1.2% and 6.4% over the 21st century, respectively. The largest reductions in food quality are in the oligotrophic subtropical gyres and Arctic Ocean where declines by the end of the century can exceed 20%. Using the change in the carbon export efficiency in PISCES-QUOTA, we estimate that fixed stoichiometry models may be underestimating 21st century cumulative ocean carbon uptake by 0.5-3.5% (2.0-15.1 PgC).

  7. Evaluation of a pilot 'peer support' training programme for volunteers in a hospital-based cancer information and support centre.

    PubMed

    Kinnane, Nicole Anne; Waters, Trish; Aranda, Sanchia

    2011-01-01

    Volunteers from Peter MacCallum Cancer Centre (Peter Mac) Patient Information and Support Centre (PISC) assist the Cancer Support Nurse by helping patients and families/carers find information and provide face-to-face peer support. Benefits of shared personal experiences between volunteer and patient are clearly different from professional support. Volunteers require specific skill sets and detailed preparation for this role. Volunteers completed a 3-day training programme adapted from the Cancer Council Victoria's 'Cancer Connect Telephone Peer Support Volunteer' training programme. The focus was role expectations and boundaries for peer support volunteers, debriefing, communication skills training, support services, complementary and alternative therapies and internet information. Assessment included a quiz and observation for a range of competencies. Role-play with simulated patients developed appropriate support skills. Eight volunteers participated. Pre-training questionnaires revealed all volunteers highly self-rated existing skills supporting people affected by cancer. During training, volunteers recognised these skills were inadequate. All agreed that role-play using an actor as a 'simulated patient' helped develop communication skills; however, the experience proved challenging. Post-training all reported increased knowledge of role definition and boundaries, supportive communication skills, supports available for patients and families/carers and importance of self-care. Facilitators recommended seven of the eight participants be accredited PISC Peer Support Volunteers. One volunteer was assessed unsuitable for consistently overstepping the boundaries of the peer support role and withdrew from training. Success of the programme resulted in a trained 'face-to-face peer support volunteer' group better equipped for their role. Sixteen months following training, all who completed the programme remain active volunteers in the PISC. Planned educational updates

  8. MoonRIDERS: NASA and Hawaiis Innovative Lunar Surface Flight Experiment for Landing in Late 2017

    NASA Technical Reports Server (NTRS)

    Kelso, R. M.; Romo, R.; Mackey, P. J.; Phillips, J. R., III; Cox, R. E.; Hogue, M. D.; Calle, C. I.

    2016-01-01

    Recently, NASA Kennedy Space Center, Hawaii's state aerospace agency PISCES, and two Hawaii high schools Iolani and Kealakehe have come together in a unique collaboration called MoonRIDERS. This strategic partnership will allow Hawaii students to participate directly in sending a science experiment to the surface of the moon. The MoonRIDERS project started in the spring of 2014, with each institution responsible for its own project costs and activities. PISCES, given its legislative direction in advancing planetary surface systems, saw this collaboration as an important opportunity to inspire a young generation and encourage STEM (Science, Technology, Engineering, and Mathematics) learning. Under the guidance of PISCES and NASA, the students will be involved hands-on from start to finish in the engineering, testing, and validation of a space technology called the Electrodynamic Dust Shield (EDS). Dust is a critical issue for space exploration, as evidenced by the Apollo lunar missions and Mars rovers and landers. Dust creates a number of problems for humans and hardware, including inhalation, mechanical interference, wear and tear on spacesuits, inhibition of heat transfer on radiators, and reduced efficiency of solar panels. To address this, the EDS is designed to work on a variety of materials, and functions by generatingelectrodynamic fields to clear away the dust. The Google Lunar XPRIZE (GLXP), a space competition "designed to inspire pioneers to do robotic space transport on a budget," serves as a likely method for the MoonRIDERS to get their project to the moon. The EDS would potentially be flown as a hosted payload on a competitor's lander (still to be chosen). This briefing will provide an overview of the technology, the unique partnership, progress update and testing leading to this flight opportunity.

  9. Investigation of He–W interactions using DiMES on DIII-D

    DOE Office of Scientific and Technical Information (OSTI.GOV)

    Doerner, R. P.; Rudakov, D. L.; Chrobak, C. P.

    Here, tungsten button samples were exposed to He ELMing H-mode plasma in DIII-D using 2.3 MW of electron cyclotron heating power. Prior to the exposures, the W buttons were exposed to either He, or D, plasma in PISCES-A for 2000 s at surface temperatures of 225–850 °C to create a variety of surfaces (surface blisters, subsurface nano-bubbles, fuzz). Erosion was spectroscopically measured from each DiMES sample, with the exception of the fuzzy W samples which showed almost undetectable WI emission. Post-exposure grazing incidence small angle x-ray scattering surface analysis showed the formation of 1.5 nm diameter He bubbles in themore » surface of W buttons after only a single DIII-D (3 s, ~150 ELMs) discharge, similar to the bubble layer resulting from the 2000 s. exposure in PISCES-A. No surface roughening, or damage, was detected on the samples after approximately 600 ELMs with energy density between 0.04–0.1 MJ m –2.« less

  10. Investigation of He–W interactions using DiMES on DIII-D

    DOE PAGES

    Doerner, R. P.; Rudakov, D. L.; Chrobak, C. P.; ...

    2016-01-22

    Here, tungsten button samples were exposed to He ELMing H-mode plasma in DIII-D using 2.3 MW of electron cyclotron heating power. Prior to the exposures, the W buttons were exposed to either He, or D, plasma in PISCES-A for 2000 s at surface temperatures of 225–850 °C to create a variety of surfaces (surface blisters, subsurface nano-bubbles, fuzz). Erosion was spectroscopically measured from each DiMES sample, with the exception of the fuzzy W samples which showed almost undetectable WI emission. Post-exposure grazing incidence small angle x-ray scattering surface analysis showed the formation of 1.5 nm diameter He bubbles in themore » surface of W buttons after only a single DIII-D (3 s, ~150 ELMs) discharge, similar to the bubble layer resulting from the 2000 s. exposure in PISCES-A. No surface roughening, or damage, was detected on the samples after approximately 600 ELMs with energy density between 0.04–0.1 MJ m –2.« less

  11. Parasites of Bloater Coregonus hoyi (Salmonidae) from Lake Michigan, U.S.A

    USGS Publications Warehouse

    Madenjian, Charles P.; Muzzall, Patrick M.

    2013-01-01

    In total, 158 bloaters Coregonus hoyi collected in September and October 2011 from 4 Lake Michigan, U.S.A., ports were examined for parasites. The ports included Waukegan (WK), Illinois; Port Washington (PW) and Sturgeon Bay (SB), Wisconsin; and Saugatuck (SG), Michigan. Parasites found in bloaters by port were cestodes Cyathocephalus truncatus (WK, PW, and SB) and Eubothrium salvelini (WK, PW, SB, and SG); the nematode Cystidicola farionis (WK, PW, SB, and SG); acanthocephalans Acanthocephalus dirus (WK and PW), Echinorhynchus salmonis (WK, PW, and SB), and Neoechinorhynchus tumidus (SB); and the copepod Salmincola corpulentus (WK and PW). Gravid individuals of all parasite species were found except for E. salvelini and A. dirus. Cystidicola farionis had the highest prevalence at each port, and the highest mean intensity and mean abundance at PW. The numbers of C. farionis at PW were significantly higher than those at WK and SB. Echinorhynchus salvelini had the highest mean intensities and mean abundances at WK, SB, and SG. The values for parasite species richness in bloaters were similar among ports. The total numbers of parasites were similar between WK and PW, but they were higher at these ports than at SB. The parasite faunas of bloaters were characterized by autogenic helminth species.

  12. Degradation of organophosphates by fish liver phosphatases

    USGS Publications Warehouse

    Hogan, James W.; Knowles, Charles O.

    1968-01-01

    Liver homogenates of bluegill, Lepomis macrochirus Rafinesque, and channel catfish, Ictalurus punctatus (Walbaum), were shown by a manometric technique to contain soluble enzymes capable of degrading diisopropyl phosphorofluoridate (DFP) and 2,2-dichlorovinyl dimethyl phosphate (dichlorvos). Hydrolysis of the compounds was greatest in the presence of the manganic ion. Tentative identification of certain of the hydrolysis products suggested that cleavage of the anhydride bond was a degradation pathway for DFP and dichlorvos in vitro under the assay conditions employed. Substrate summation, inhibition, and activation experiments failed to clearly indicate more than a single enzyme hydrolyzing DFP and dichlorvos in the two fish.

  13. Some enzymatic properties of brain Acetylcholinesterase from bluegill and channel catfish

    USGS Publications Warehouse

    Hogan, James W.; Knowles, Charles O.

    1968-01-01

    Using a manometric technique an acetylcholinesterase (EC 3.1.1.7, acetylcholine acetyl-hydrolase) was demonstrated in brain tissue from the bluegill, Lepomis macrochirus Rafinesque, and the channel catfish, Ictalurus punctatus (Walbaum). The activities were 19 and 37 μmoles acetylcholine hydrolyzed/milligram protein per hour for the bluegill and channel catfish enzymes, respectively. The optimum substrate concentration for the hydrolysis of acetylcholine was 10 mMfor the enzymes from both species. Generally, the catfish acetylcholinesterase was somewhat more susceptible than the bluegill to the inhibitors tested; however, the bluegill enzyme was more susceptible to inhibition by malathion and malaoxon.

  14. Isolation and cross-familial amplification of 41 microsatellites for the brook charr (Salvelinus fontinalis)

    USGS Publications Warehouse

    Perry, G.M.L.; King, T.L.; St. -Cyr, J.; Valcourt, M.; Bernatchez, L.

    2005-01-01

    The brook charr (Salvelinus fontinalis; Osteichthyes: Salmonidae) is a phenotypically diverse fish species inhabiting much of North America. But relatively few genetic diagnostic resources are available for this fish species. We isolated 41 microsatellites from S. fontinalis polymorphic in one or more species of salmonid fish. Thirty-seven were polymorphic in brook charr, 15 in the congener Arctic charr (Salvelinus alpinus) and 14 in the lake charr (Salvelinus namaycush). Polymorphism was also relatively high in Oncorhynchus, where 21 loci were polymorphic in rainbow trout (Oncorhynchus mykiss) and 16 in cutthroat trout (Oncorhynchus clarkii) but only seven and four microsatellite loci were polymorphic in the more distantly related lake whitefish (Coregonus clupeaformis) and Atlantic salmon (Salmo salar), respectively. One duplicated locus (Sfo228Lav) was polymorphic at both duplicates in S. fontinalis. ?? 2005 Blackwell Publishing Ltd.

  15. Helminths in an intensively stocked population of lake trout, Salvelinus namaycush, from Lake Huron

    USGS Publications Warehouse

    Muzzall, Patrick M.; Bowen, Charles A.

    2000-01-01

    Eighty stocked lake trout Salvelinus namaycush (Salmonidae), collected from 2 locations in Lake Huron in May 1995, were examined for parasites. The parasite fauna of this top predator in Lake Huron was characterized by only 6 helminth species. Echinorhynchus salmonis infected all lake trout with a mean intensity of 163.9. The intensity of this acanthocephalan species significantly increased with host length and weight. Eubothrium salvelini infected 78 lake trout with a maximum number of 81 scoleces counted. Diplostomum sp., Cyathocephalus truncatus, Capillaria salvelini, and Neoechinorhynchus sp. infrequently infected lake trout. The low parasite species richness in these lake trout is believed to be due to their large size at stocking and to the loss of historical enzootic host-parasite relationships that followed the absence of this fish species in Lake Huron for 26 yr.

  16. Validation of a short questionnaire to measure symptoms and functional limitations associated with hand-foot syndrome and mucositis in patients with metastatic renal cell carcinoma.

    PubMed

    Lai, Jin-Shei; Beaumont, Jennifer L; Diaz, Jose; Khan, Sadya; Cella, David

    2016-01-15

    Hand-foot syndrome and mucositis/stomatitis are frequent adverse events (AEs) of treatment with tyrosine kinase inhibitors in cancer therapy. Quality-of-life instruments that measure the functional consequences of these AEs are needed to assess the impact of therapeutic interventions and to guide patient care. The Hand-Foot and Mucositis Symptom and Impact Questionnaire (HAMSIQ [formerly the Supplementary Quality of Life Questionnaire]) was used in the COMPARZ trial (Pazopanib vs Sunitinib in the Treatment of Locally Advanced and/or Metastatic Renal Cell Carcinoma [national clinical trial no. NCT00720941]) and the PISCES study (Patient Preference Study of Pazopanib vs Sunitinib in Advanced or Metastatic Kidney Cancer [clinicaltrials.gov NCT01064310]) to assess mouth/throat and hand/foot soreness symptoms and subsequent limitations in patients receiving pazopanib or sunitinib for metastatic renal cell carcinoma. The objective of the current analysis was to validate the HAMSIQ using data from the PISCES study. The HAMSIQ was administered in the PISCES study at baseline and every 2 weeks over two 10-week periods to patients who were receiving pazopanib or sunitinib. Data from the first 10-week period were used to assess the feasibility, validity, and responsiveness of the HAMSIQ. In total, ≥85% of 169 patients completed the HAMSIQ (excluding the item concerning days off work). Correlations among items within the same limitation subscale generally were high (Cronbach α ≥ .80). HAMSIQ limitation scores differentiated patients according to their baseline performance status and severity of soreness. Small-to-moderate correlations were observed for the symptoms/limitation scores and for changes from baseline scores between the HAMSIQ and the Functional Assessment of Chronic Illness Therapy fatigue survey. The HAMSIQ demonstrated responsiveness to changes in clinical status and the development of hand-foot syndrome AEs over time. The HAMSIQ is a feasible, valid

  17. The Independent Technical Analysis Process Final Report 2006-2007.

    DOE Office of Scientific and Technical Information (OSTI.GOV)

    Duberstein, Corey; Ham, Kenneth; Dauble, Dennis

    2007-03-01

    The Bonneville Power Administration (BPA) contracted with the Pacific Northwest National Laboratory (PNNL) to provide technical analytical support for system-wide fish passage information (BPA Project No. 2006-010-00). The goal of this project was to produce rigorous technical analysis products using independent analysts and anonymous peer reviewers. This project provided an independent technical source for non-routine fish passage analyses while allowing routine support functions to be performed by other well-qualified entities. The Independent Technical Analysis Process (ITAP) was created to provide non-routine analysis for fish and wildlife agencies and tribes in particular and the public in general on matters related tomore » juvenile and adult salmon and steelhead passage through the mainstem hydrosystem. The process was designed to maintain the independence of analysts and reviewers from parties requesting analyses, to avoid potential bias in technical products. The objectives identified for this project were to administer a rigorous, transparent process to deliver unbiased technical assistance necessary to coordinate recommendations for storage reservoir and river operations that avoid potential conflicts between anadromous and resident fish. Seven work elements, designated by numbered categories in the Pisces project tracking system, were created to define and accomplish project goals as follows: (1) 118 Coordination - Coordinate technical analysis and review process: (a) Retain expertise for analyst/reviewer roles. (b) Draft research directives. (c) Send directive to the analyst. (d) Coordinate two independent reviews of the draft report. (e) Ensure reviewer comments are addressed within the final report. (2) 162 Analyze/Interpret Data - Implement the independent aspects of the project. (3) 122 Provide Technical Review - Implement the review process for the analysts. (4) 132 Produce Annual Report - FY06 annual progress report with Pisces Disseminate (5

  18. A riverscape perspective of Pacific salmonids and aquatic habitats prior to large-scale dam removal in the Elwha River, Washington, USA

    USGS Publications Warehouse

    Brenkman, S.J.; Duda, J.J.; Torgersen, C.E.; Welty, E.; Pess, G.R.; Peters, R.; McHenry, M.L.

    2012-01-01

     Dam removal has been increasingly proposed as a river restoration technique. In 2011, two large hydroelectric dams will be removed from Washington State’s Elwha River. Ten anadromous fish populations are expected to recolonise historical habitats after dam removal. A key to understanding watershed recolonisation is the collection of spatially continuous information on fish and aquatic habitats. A riverscape approach with an emphasis on biological data has rarely been applied in mid-sized, wilderness rivers, particularly in consecutive years prior to dam removal. Concurrent snorkel and habitat surveys were conducted from the headwaters to the mouth (rkm 65–0) of the Elwha River in 2007 and 2008. This riverscape approach characterised the spatial extent, assemblage structure and patterns of relative density of Pacific salmonids. The presence of dams influenced the longitudinal patterns of fish assemblages, and species richness was the highest downstream of the dams, where anadromous salmonids still have access. The percent composition of salmonids was similar in both years for rainbow trout, Oncorhynchus mykiss (Walbaum), coastal cutthroat trout, Oncorhynchus clarkii clarkii (Richardson) (89%; 88%), Chinook salmon, Oncorhynchus tshawytscha (Walbaum) (8%; 9%), and bull trout, Salvelinus confluentus (Suckley) (3% in both years). Spatial patterns of abundance for rainbow and cutthroat trout (r = 0.76) and bull trout (r = 0.70) were also consistent between years. Multivariate and univariate methods detected differences in habitat structure along the river profile caused by natural and anthropogenic factors. The riverscape view highlighted species-specific biological hotspots and revealed that 60–69% of federally threatened bull trout occurred near or below the dams. Spatially continuous surveys will be vital in evaluating the effectiveness of upcoming dam removal projects at restoring anadromous salmonids.

  19. Virus diseases of the salmonidae in the western United States. III. Immunopathological aspects

    USGS Publications Warehouse

    Klontz, George W.; Yasutake, William T.; Parisot, T.J.

    1965-01-01

    The immune response among fish, from a phylogenetic standpoint, presents a progressive pattern of increasing development. The cyclostomes have been shown to have only feeble immunologic responsiveness. One of their number, the hagfish, appeared to be totally lacking in the ability to actively acquire antibodies.Among the elasmobranchs, the sharks have received the most study immunologically. This group demonstrated a variable response to antigenic stimulationOf the teleosts, the salmonids and the cyprinids have been the more frequent recipients of experimentally introduced antigens. These fishes, as well as other species of teleosts, are quite active and quite consistent in their response to various antigens.

  20. Star of Bethlehem

    NASA Astrophysics Data System (ADS)

    Hughes, D.; Murdin, P.

    2001-07-01

    The biblical Star of Bethlehem, which heralded the birth of Jesus Christ, is only mentioned in the Gospel of St Matthew 2. The astrologically significant 7 bc triple conjunction of Jupiter and Saturn in the constellation of Pisces is the most likely candidate, although a comet/nova in 5 bc and a comet in 4 bc cannot be ruled out. There is also the possibility that the star was simply fictitious....

  1. Aries

    NASA Astrophysics Data System (ADS)

    Murdin, P.

    2000-11-01

    (the Ram; abbrev. Ari, gen. Arietis; area 441 sq. deg.) A northern zodiacal constellation that lies between Taurus and Pisces, and culminates at midnight in late October. It represents the ram in Greek mythology whose golden fleece was the quest of Jason and the Argonauts. Its brightest stars were cataloged by Ptolemy (c. AD 100-175) in the Almagest. In Ptolemy's day the Sun was in Aries at the v...

  2. An immune-complex glomerulonephritis of Chinook salmon, Oncorhynchus tshawytscha (Walbaum).

    PubMed

    Lumsden, J S; Russell, S; Huber, P; Wybourne, B A; Ostland, V E; Minamikawa, M; Ferguson, H W

    2008-12-01

    Chinook salmon from New Zealand were shown to have a generalized membranous glomerulonephritis that was most severe in large fish. Marked thickening of the glomerular basement membrane was the most consistent lesion, with the presence of an electron-dense deposit beneath the capillary endothelium.Severely affected glomeruli also had expansion of the mesangium and loss of capillaries,synechiae of the visceral and parietal epithelium and mild fibrosis of Bowmans capsule. Chinook salmon from British Columbia, Canada with bacterial kidney disease caused by Renibacterium salmoninarum had similar histological lesions. They also had thickened glomerular basement membranes that were recognized by rabbit antiserum to rainbow trout immunoglobulin. This was true only when frozen sections of kidney were used and not formalin-fixed tissue. An attempt to experimentally produce a glomerulopathy in rainbow trout by repeated immunization with killed R. salmoninarum was not successful. Case records from the Fish Pathology Laboratory at the University of Guelph over a 10-year period revealed that a range of species were diagnosed with glomerulopathies similar to those seen in Chinook salmon. The majority of these cases were determined to have chronic inflammatory disease. This report has identified the presence of immunoglobulin within thickened basement membranes of Chinook salmon with glomerulonephritis and supports the existence of type III hypersensitivity in fish.

  3. Piscine reovirus, but not Jaundice Syndrome, was transmissible to Chinook Salmon, Oncorhynchus tshawytscha (Walbaum), Sockeye Salmon, Oncorhynchus nerka (Walbaum), and Atlantic Salmon, Salmo salar L.

    USGS Publications Warehouse

    Garver, Kyle A.; Marty, Gary D.; Cockburn, Sarah N.; Richard, Jon; Hawley, Laura M.; Müller, Anita; Thompson, Rachel L.; Purcell, Maureen K.; Saksida, Sonja M.

    2015-01-01

    A Jaundice Syndrome occurs sporadically among sea-pen-farmed Chinook Salmon in British Columbia, the westernmost province of Canada. Affected salmon are easily identified by a distinctive yellow discolouration of the abdominal and periorbital regions. Through traditional diagnostics, no bacterial or viral agents were cultured from tissues of jaundiced Chinook Salmon; however, piscine reovirus (PRV) was identified via RT-rPCR in all 10 affected fish sampled. By histopathology, Jaundice Syndrome is an acute to peracute systemic disease, and the time from first clinical signs to death is likely <48 h; renal tubular epithelial cell necrosis is the most consistent lesion. In an infectivity trial, Chinook Salmon, Sockeye Salmon and Atlantic Salmon, intraperitoneally inoculated with a PRV-positive organ homogenate from jaundiced Chinook Salmon, developed no gross or microscopic evidence of jaundice despite persistence of PRV for the 5-month holding period. The results from this study demonstrate that the Jaundice Syndrome was not transmissible by injection of material from infected fish and that PRV was not the sole aetiological factor for the condition. Additionally, these findings showed the Pacific coast strain of PRV, while transmissible, was of low pathogenicity for Atlantic Salmon, Chinook Salmon and Sockeye Salmon.

  4. Piscine reovirus, but not Jaundice Syndrome, was transmissible to Chinook Salmon, Oncorhynchus tshawytscha (Walbaum), Sockeye Salmon, Oncorhynchus nerka (Walbaum), and Atlantic Salmon, Salmo salar L.

    PubMed

    Garver, K A; Marty, G D; Cockburn, S N; Richard, J; Hawley, L M; Müller, A; Thompson, R L; Purcell, M K; Saksida, S

    2016-02-01

    A Jaundice Syndrome occurs sporadically among sea-pen-farmed Chinook Salmon in British Columbia, the westernmost province of Canada. Affected salmon are easily identified by a distinctive yellow discolouration of the abdominal and periorbital regions. Through traditional diagnostics, no bacterial or viral agents were cultured from tissues of jaundiced Chinook Salmon; however, piscine reovirus (PRV) was identified via RT-rPCR in all 10 affected fish sampled. By histopathology, Jaundice Syndrome is an acute to peracute systemic disease, and the time from first clinical signs to death is likely <48 h; renal tubular epithelial cell necrosis is the most consistent lesion. In an infectivity trial, Chinook Salmon, Sockeye Salmon and Atlantic Salmon, intraperitoneally inoculated with a PRV-positive organ homogenate from jaundiced Chinook Salmon, developed no gross or microscopic evidence of jaundice despite persistence of PRV for the 5-month holding period. The results from this study demonstrate that the Jaundice Syndrome was not transmissible by injection of material from infected fish and that PRV was not the sole aetiological factor for the condition. Additionally, these findings showed the Pacific coast strain of PRV, while transmissible, was of low pathogenicity for Atlantic Salmon, Chinook Salmon and Sockeye Salmon. © 2015 John Wiley & Sons Ltd.

  5. [Comparative sensitivity of liver monoamine oxidases of frog and whitefish to some tricyclic compounds].

    PubMed

    Basova, I N; Iagodina, O V

    2011-01-01

    There is performed a comparative analysis of action of four acridine derivatives and of one xanthene derivative (pyronine G) on activity of liver monoamine oxidase (MAO) of two species of poikilothermal freshwater animals: a representative of amphibians--the common frog Rana temnporaria and a representative of the order Salmonidae--the European whitefish Coregonus lavaretus. The studied synthetic hexamerous tricyclic compounds show the irreversible character of inhibition of intermediate potency towards the enzyme from both biological sources. There are obtained qualitative and quantitative differences in the reactional ability and selectivity of action of the studied inhibitors for liver MAO of frog and whitefish. The obtained data of the inhibitory analysis with use of specific substrates are an indirect proof for the existence in liver of the studies frog species of two molecular forms, whereas in the whitefish liver--single molecular MAO form.

  6. The complete mitogenome of brown trout (Salmo trutta fario) and its phylogeny.

    PubMed

    Sahoo, Prabhati K; Singh, Lalit; Sharma, Lata; Kumar, Rohit; Singh, Vijay K; Ali, S; Singh, Atul K; Barat, Ashoktaru

    2016-11-01

    The complete mitochondrial genome of Salmo trutta fario, commonly known as brown trout, was sequenced using NGS technology. The mitochondrial genome size was determined to be 16 677 bp and composed of 13 protein-coding gene (PCG), 22 tRNAs, 2 rRNA genes, and 1 putative control region. The overall mitogenome composition of S. trutta fario is A: 28.13%, G: 16.44%, C: 29.47%, and T: 25.96% with A + T content of 54.09% and G + C content of 45.91%. The gene arrangement and the order are similar to other vertebrates. The phylogenetic tree constructed using 42 complete mitogenomes of Salmonidae fishes confirmed the position of the present species under the genus Salmo of subfamily Salmoninae. NGS platform was proved to be a rapid and time-saving technology to reveal complete mitogenomes.

  7. Global Salmonidae introductions reveal stronger ecological effects of changing intraspecific compared to interspecific diversity.

    PubMed

    Buoro, Mathieu; Olden, Julian D; Cucherousset, Julien

    2016-11-01

    The introduction of organisms within the native range of wild conspecifics is a widespread phenomenon and locally modifies patterns in intraspecific diversity. However, our knowledge of the resulting ecological effects, as opposed to those caused by invasion-induced changes in interspecific diversity, is still limited. Here, we investigated the ecological effects of native and non-native invaders across levels of biological organisations and recipient organisms using the global and long history introductions of salmonids. Our meta-analysis demonstrated that the global effects of native species introductions exceeded those induced by non-native invaders. The impacts of native invaders were primarily manifested at the individual level on wild conspecifics, but remained largely unexplored on other native organisms and at the community and ecosystem levels. Overlooked and poorly appreciated, quantifying the impacts of native invaders has important implications because human-assisted introductions of domesticated organisms are ubiquitous and likely to proliferate in the future. © 2016 John Wiley & Sons Ltd/CNRS.

  8. Evidence of scaling of void probability in nucleus-nucleus interactions at few GeV energy

    DOE Office of Scientific and Technical Information (OSTI.GOV)

    Ghosh, Dipak; Biswas, Biswanath; Deb, Argha

    1997-11-01

    The rapidity gap probability in the {sup 24}Mg-AgBr interaction at 4.5GeV/c/nucleon has been studied in detail. The data reveal scaling behavior of the void probability in the central rapidity domain which confirms the validity of the linked-pair approximation for the N-particle cumulant correlation functions. This scaling behavior appears to be similar to the void probability in the Perseus-Pisces supercluster region of galaxies. {copyright} {ital 1997} {ital The American Physical Society}

  9. [Intracellular Protein Degradation in Growth of Atlantic Salmon, Salmo salar L].

    PubMed

    Lysenko, L A; Kantserova, N P; Krupnova, M Yu; Veselov, A E; Nemova, N N

    2015-01-01

    A brief review on the common characteristics and specific features of proteolytic machinery in fish skeletal muscles (based on Atlantic salmon, Salmo salar L., Salmonidae) has been given. Among a variety of proteases in the muscle tissue, those determining protein degradation level in developing and intensively growing muscles in salmon young and by this way regulating protein retention intensity and growth at all namely lysosomal cathepsins B and D and calcium-dependent proteases (calpains) were comprehensively studied. Revealed age-related differences in intracellular protease activity in salmon skeletal muscles indicate the role of proteolysis regulation in growth in general and a specific role of the individual proteolytic enzymes in particular. The data on negative correlation of cathepsin D and calpain activity levels in muscles and the rate of weight increase in juvenile salmon were obtained. A revealed positive correlation of cathepsin B activity and morphometric parameters in fish young presumably indicates its primary contribution to non-myofibrillar protein turnover.

  10. The Hawaii Undersea Research Laboratory's 25th Anniversary Expedition to the South Pacific

    NASA Astrophysics Data System (ADS)

    Smith, J. R.; Wiltshire, J. C.; Malahoff, A.

    2005-12-01

    The Hawaii Undersea Research Laboratory (HURL) was established by NOAA at the University of Hawaii 25 years ago as part of its National Undersea Research Program. HURL's mission is to study deep water marine processes in the Pacific Ocean through a competitive proposal and review process. The dual Pisces IV and Pisces V 2000-meter manned submersibles, an RCV-150 1000-meter ROV, and multibeam equipped support ship R/V Ka'imikai-o-Kanaloa ( KoK) were largely acquired from the petroleum industry then adapted and upgraded to carry out cutting edge scientific expeditions. These studies range from active submarine volcanoes, delicate precious coral gardens, endangered marine mammal and fisheries management, to engineering surveys and deployment of observatory systems. HURL successfully completed a major 5-month expedition to the South Pacific during March-August 2005, working in the waters of New Zealand, Tonga, American Samoa, and the U.S. Line Islands covering a distance of nearly 14,500 nautical miles. This mission was significant in both the scientific merit and scope of operations, consisting of 8 different cruise legs at 21 study sites, with 12 chief and co-chief scientists, 58 total science team participants, and completing 61 out of 56 scheduled Pisces science dives, 17 ROV dives, 5 multibeam survey areas, 6 CTD rosette deployments, and 7 instrument mooring recoveries. The $3.5 million expedition was funded by an international partnership with New Zealand agencies (GNS & NIWA) and the University of Kiel in Germany along with the NOAA Office of Exploration and National Undersea Research Program. While most of the individual cruise legs focused on active submarine volcanoes of the Tonga-Kermadec Islands Arc and the Samoan hot spot chain with their hydrothermal systems and associated biological communities, others concentrated on marine protected areas including those of American Samoa and the remote atolls of the Line Islands of the Central Pacific. These studies

  11. Phylogeny and dating of divergences within the genus Thymallus (Salmonidae: Thymallinae) using complete mitochondrial genomes.

    PubMed

    Ma, Bo; Jiang, Haiying; Sun, Peng; Chen, Jinping; Li, Linmiao; Zhang, Xiujuan; Yuan, Lihong

    2016-09-01

    The genus Thymallus has attracted increasing attention in recent years because of its sharp demographic decline. In this study, we reported four complete mitochondrial genomes in the Thymallus genus: Baikal-Lena grayling (T. arcticus baicalolenensis), lower Amur grayling (T. tugarinae), Yalu grayling (T. a. yaluensis), and Mongolian grayling (T. brevirostris). The total length of the four new grayling mtDNAs ranged from 16 658 to 16 663 bp, all of which contained 13 protein-coding genes, 22 tRNA genes, two rRNA genes, and one control region. The results suggested that mitochondrial genomes could be a powerful marker for resolving the phylogeny within Thymallinae. Our study validated that the Yalu grayling should be a synonym of the Amur grayling (T. grubii) at the whole mitogenome level. The phylogenetic and dating analyses placed the Amur grayling at the deepest divergence node within Thymallus, diverging at ∼14.95 Ma. The lower Amur grayling diverged at the next deepest node (∼12.14 Ma). This was followed by T. thymallus, which diverged at ∼9.27 Ma. The Mongolian grayling and the ancestor of the sister species, T. arcticus and T. arcticus baicalolenensis, diverged at ∼7.79 Ma, with T. arcticus and T. arcticus baicalolenensis separating at ∼6.64 Ma. Our study provides far better resolution of the phylogenetic relationships and divergence dates of graylings than previous studies.

  12. Genetic Diversity and Hybridisation between Native and Introduced Salmonidae Fishes in a Swedish Alpine Lake.

    PubMed

    Faulks, Leanne; Östman, Örjan

    2016-01-01

    Understanding the processes underlying diversification can aid in formulating appropriate conservation management plans that help maintain the evolutionary potential of taxa, particularly under human-induced activities and climate change. Here we assessed the microsatellite genetic diversity and structure of three salmonid species, two native (Arctic charr, Salvelinus alpinus and brown trout, Salmo trutta) and one introduced (brook charr, Salvelinus fontinalis), from an alpine lake in sub-arctic Sweden, Lake Ånn. The genetic diversity of the three species was similar and sufficiently high from a conservation genetics perspective: corrected total heterozygosity, H'T = 0.54, 0.66, 0.60 and allelic richness, AR = 4.93, 5.53 and 5.26 for Arctic charr, brown trout and brook charr, respectively. There were indications of elevated inbreeding coefficients in brown trout (GIS = 0.144) and brook charr (GIS = 0.129) although sibling relationships were likely a confounding factor, as a high proportion of siblings were observed in all species within and among sampling locations. Overall genetic structure differed between species, Fst = 0.01, 0.02 and 0.04 in Arctic charr, brown trout and brook charr respectively, and there was differentiation at only a few specific locations. There was clear evidence of hybridisation between the native Arctic charr and the introduced brook charr, with 6% of individuals being hybrids, all of which were sampled in tributary streams. The ecological and evolutionary consequences of the observed hybridisation are priorities for further research and the conservation of the evolutionary potential of native salmonid species.

  13. DISCOVERY OF A NEW FAINT DWARF GALAXY ASSOCIATED WITH NGC 253

    DOE Office of Scientific and Technical Information (OSTI.GOV)

    Sand, D. J.; Crnojević, D.; Strader, J.

    2014-09-20

    We report the discovery of a new faint dwarf galaxy, which we dub Scl-MM-Dw1, at a projected distance of ∼65 kpc from the spiral galaxy NGC 253. The discovery results from the Panoramic Imaging Survey of Centaurus and Sculptor (PISCeS), a program with the Magellan/Megacam imager to study faint substructure in resolved stellar light around massive galaxies outside of the Local Group. We measure a tip of the red giant branch distance to Scl-MM-Dw1 of D = 3.9 ± 0.5 Mpc, consistent with that of NGC 253, making their association likely. The new dwarf's stellar population is complex, with an old, metal-poor red giant branch (≳10 Gyr, [Fe/H] ∼ –2), andmore » an asymptotic giant branch with an age of ∼500 Myr. Scl-MM-Dw1 has a half-light radius of r{sub h} = 340 ± 50 pc and an absolute magnitude of M{sub V}  = –10.3 ± 0.6 mag, comparable to the Milky Way's satellites at the same luminosity. Once complete, our imaging survey of NGC 253 and other nearby massive galaxies will provide a census of faint substructure in halos beyond the Local Group, both to put our own environment into context and to confront models of hierarchical structure formation.« less

  14. The Church of San Miniato al Monte, Florence: Astronomical and Astrological Connections

    NASA Astrophysics Data System (ADS)

    Shrimplin, V.

    2011-06-01

    The church of San Miniato al Monte is examined in the context of interest in astrology and astronomy in early Renaissance Florence. Vitruvius emphasised the need for architects to "be acquainted with astronomy and the theory of the heavens" in his famous Ten Books of Architecture and, at San Miniato, astronomical and astrological features are combined in order to link humanity with the celestial or spiritual realm. The particular significance of Pisces and Taurus is explored in relation to Christian symbolism, raising questions about the role of astronomy and astrology in art and architecture.

  15. The Baryonic Tully Fisher Relation for the ALFALFA 100 Sample

    NASA Astrophysics Data System (ADS)

    Finney, Elizabeth E.; Haynes, Martha P.; APPSS Team

    2018-01-01

    The APPSS (Arecibo Pisces-Perseus Supercluster Survey) team aims to quantify the over-densities of matter in the Pisces-Perseus Supercluster (PPS) filament by exploring the Baryonic Tully Fisher Relation (BTFR) of the ALFALFA (Arecibo Legacy Fast ALFA) 100 survey – (α.100) and, in the future, using targeted observations of low mass star-forming galaxies. Galaxies in the PPS filament region and its foreground and background voids are influenced by the gravitational pull of the large concentration of matter, and are expected to show velocities that deviate significantly from the smooth Hubble expansion. By deriving the peculiar motions of galaxies in the ALFALFA 100 survey as measured by the BTFR, we will further our understanding of the amount and distribution of the underlying dark matter in the supercluster. In this project, we make a first attempt to investigate the BTFR of the α.100 sample, and discuss our findings. This sample was corrected for inclination, extinction, and other sources of scatter, and a least squares linear regression fit was applied to determine the slope of the BTFR. We compare the slope of the α.100 sample to various literature values, and find that the slope is shallower due to slower-rotating, low-mass galaxies. Investigation of this shallow slope is needed in future work, as well as a modification of the intrinsic axial ratio assumed for this sample of galaxies. EF participated in the summer 2017 REU program in the Center for Astrophysics and Planetary Science at Cornell University under NSF award AST-1659264.

  16. Research in computer science

    NASA Technical Reports Server (NTRS)

    Ortega, J. M.

    1984-01-01

    Several short summaries of the work performed during this reporting period are presented. Topics discussed in this document include: (1) resilient seeded errors via simple techniques; (2) knowledge representation for engineering design; (3) analysis of faults in a multiversion software experiment; (4) implementation of parallel programming environment; (5) symbolic execution of concurrent programs; (6) two computer graphics systems for visualization of pressure distribution and convective density particles; (7) design of a source code management system; (8) vectorizing incomplete conjugate gradient on the Cyber 203/205; (9) extensions of domain testing theory and; (10) performance analyzer for the pisces system.

  17. In vivo and in vitro activities of the seed extract of Piper guineense Schum. and Thonn. against skin and gill monogenean parasites of gold fish (Carassius auratus auratus).

    PubMed

    Ekanem, A P; Wang, M; Simon, J E; Obiekezie, A I; Morah, F

    2004-10-01

    Methanol extracts of the seeds of Piper guineense (Piperaceae) were active against gold fish (Carassius auratus auratus L. Pisces Cyprinidae) monogenean parasites. The seed extract of P. guineense was administered at different concentrations (0.5-2.0 mg/L) under in vivo and in vitro conditions. There was a higher efficacy of the effects of the extracts against fish parasites under in vitro situations than under in vivo. Three major compounds (piperanine, N-isobutyl (E,E)-2,4 decadienamide and Deltaalpha,beta-dihydrowasanine) were identified from the seed extract of Piper guineense by LC-MS analysis. Copyright 2004 John Wiley & Sons, Ltd.

  18. Penetration of tungsten-alloy rods into composite ceramic targets: Experiments and 2-D simulations

    DOE Office of Scientific and Technical Information (OSTI.GOV)

    Rosenberg, Z.; Dekel, E.; Hohler, V.

    1998-07-10

    A series of terminal ballistics experiments, with scaled tungsten-alloy penetrators, was performed on composite targets consisting of ceramic tiles glued to thick steel backing plates. Tiles of silicon-carbide, aluminum nitride, titanium-dibroide and boron-carbide were 20-80 mm thick, and impact velocity was 1.7 km/s. 2-D numerical simulations, using the PISCES code, were performed in order to simulate these shots. It is shown that a simplified version of the Johnson-Holmquist failure model can account for the penetration depths of the rods but is not enough to capture the effect of lateral release waves on these penetrations.

  19. Locating and Evaluating Sea-Disposed Munitions--Examples from the Hawaii Undersea Military Munitions Assessment (HUMMA) Project

    NASA Astrophysics Data System (ADS)

    Edwards, M.; Wilkens, R. H.; Kelley, C.; de Carlo, E. H.; MacDonald, K.; Garcia, S.; Vanwoerkom, M.; Payne, Z.; Dupra, V.; Rosete, M.; Cox, M.; Fineran, S.; King, J. C.; Carton, G.

    2009-12-01

    The Army, under its Environmental Quality Technology (EQT) Program funded the HUMMA Project to assess the location of, and potential risk to human health posed by, sea disposed munitions (discarded military munitions (DMM)) at a study site south of Pearl Harbor, Hawai‘i known as HI-05. These conventional and chemical munitions are believed to have been exposed to undersea biochemical and mechanical erosion since the late 1940’s. To locate <2-meter long DMM at depths of 300-600 meters, we used a series of nested surveys beginning with an IMI-120 sidescan sonar survey of HI-05. From backscatter data gridded into 0.5-2m cells, we identified trails of highly reflective targets as candidate study sites. We initially surveyed these sites using a towed video camera. Subsequently, during a 12-day program aboard the R/V Kaimikai-o-Kanaloa, we surveyed selected targets using PISCES submersibles and an RCV-150 remotely operated vehicle operated by the Hawaii Undersea Research Lab. Every trail of reflective targets identified in the IMI-120 data was subsequently shown to contain DMM of various types. In combination with completing optical surveys to augment the IMI-120 acoustic data, the PISCES submersibles collected 96 sediment and 24 water samples within 1 and 2 meters of high-interest DMM as well as comparative background sites. The Edgewood Chemical and Biological Center supported dive operations to ensure crew personnel were not exposed to chemical agents (CA) and processed samples on board to determine if CA was present. The processed samples were then packaged and shipped to various shore-based laboratories to determine the presence of energetics and metals. Upon completion of the diving program, various species of locally consumed snapper and shrimp were collected near several of the sediment and water sample sites for analogous laboratory analyses. Our approach proved to be highly successful, identifying in a 5-day long IMI-120 survey the location of dozens of

  20. Review of fish species introduced into the Great Lakes, 1819-1974

    USGS Publications Warehouse

    Emery, Lee

    1985-01-01

    This review is based on an extensive literature search, combined with updated information obtained from biologists, and unpublished reports from private, state, and federal organizations throughout the Great Lakes basin. The chronological review lists 34 species of fishes in 13 families that were introduced into the basin from 1819 to 1974. The Salmonidae and Cyprinidae are best represented, contributing 14 and 5 of the species, respectively. The list is divided into successful and unsuccessful introductions; each species is briefly described and information about its entry into the basin and present status is given. About half of the introductions have been successful (i.e., the fish have reproduced and created viable, self-sustaining populations). Some of the successful introductions were disastrous in terms of damage inflicted on native populations (e.g., the effect of the sea lamprey, Petromyzon marinus, on populations of lake trout, Salvelinus namaycush, and lake whitefish, Coregonus clupeaformis), but others yielded highly favorable results (e.g., the extraordinary sport fisheries created by introductions of coho salmon, Oncorhynchus kisutch, and chinook salmon, Oncorhynchus tshawytscha).

  1. Suppression of invasive lake trout in an isolated backcountry lake in Glacier National Park

    USGS Publications Warehouse

    Fredenberg, C. R.; Muhlfeld, Clint C.; Guy, Christopher S.; D'Angelo, Vincent S.; Downs, Christopher C.; Syslo, John M.

    2017-01-01

    Fisheries managers have implemented suppression programmes to control non-native lake trout, Salvelinus namaycush (Walbaum), in several lakes throughout the western United States. This study determined the feasibility of experimentally suppressing lake trout using gillnets in an isolated backcountry lake in Glacier National Park, Montana, USA, for the conservation of threatened bull trout, Salvelinus confluentus (Suckley). The demographics of the lake trout population during suppression (2009–2013) were described, and those data were used to assess the effects of suppression scenarios on population growth rate (λ) using an age-structured population model. Model simulations indicated that the population was growing exponentially (λ = 1.23, 95% CI: 1.16–1.28) prior to suppression. However, suppression resulted in declining λ(0.61–0.79) for lake trout, which was concomitant with stable bull trout adult abundances. Continued suppression at or above observed exploitation levels is needed to ensure continued population declines.

  2. Sequence analysis of infectious pancreatic necrosis virus isolated from Iranian reared rainbow trout (Oncorhynchus mykiss) in 2012.

    PubMed

    Dadar, Maryam; Peyghan, Rahim; Memari, Hamid Rajabi; Shapouri, Masod Reza Seifi Abad; Hasanzadeh, Reza; Goudarzi, Laleh Moazzami; Vakharia, Vikram N

    2013-12-01

    Infectious pancreatic necrosis virus (IPNV) is the causal agent of a highly contagious disease that affects many species of fish and shellfish. This virus causes economically significant diseases of farmed rainbow trout, Oncorhynchus mykiss (Walbaum), in Iran, which is often associated with the transmission of pathogens from European resources. In this study, moribund rainbow trout fry samples were collected during an outbreak of IPNV in three different fish farms in north and west provinces of Iran in 2012; and we investigated the full genome sequence of Iranian IPNV and compared it with previously identified IPNV sequences. The sequences of different structural and nonstructural-protein genes were compared to those of other aquatic birnaviruses sequenced to date. Our results show that the Iranian isolate falls within genogroup 5, serotype A2 strain SP, having 99% identity with the strain 1146 from Spain. These results suggest that the Iranian isolate may have originated from Europe.

  3. Detection of infectious haematopoietic necrosis virus in river water and demonstration of waterborne transmission

    USGS Publications Warehouse

    Mulcahy, D.; Pascho, R.J.; Jenes, C.K.

    1983-01-01

    In a study of the possible role of waterborne infectious haematopoietic necrosis virus in transmission of the disease among spawning sockeye salmon, Oncorhynchus nerka (Walbaum), both infection rates and virus titres were higher in fish held at high density in a side channel than in fish in the adjacent river. Virus was never isolated from river water, but was found in water from the side channel at levels ranging from 32.5 to 1600 plaque-forming units (p.f.u.)/ml. Uninfected yearling sockeye salmon held in a box in the side channel developed localized gill infections with IHN virus. The disease did not progress to the viscera until a threshold titre of about 105 p.f.u./g was reached in the gill. The effectiveness of the gill as a barrier limiting development of systemic infections means that waterborne IHN virus probably does not greatly increase the infection rate in a sockeye salmon population during spawning.

  4. Detection of infectious hematopoietic necrosis virus in river water and demonstration of waterborne transmission

    USGS Publications Warehouse

    Mulcahy, Daniel M.; Pascho, Ronald J.; Jenes, C.K.

    1983-01-01

    In a study of the possible role of waterborne infectious haematopoietic necrosis virus in transmission of the disease among spawning sockeye salmon, Oncorhynchus nerka (Walbaum), both infection rates and virus titres were higher in fish held at high density in a side channel than in fish in the adjacent river. Virus was never isolated from river water, but was found in water from the side channel at levels ranging from 32.5 to 1600 plaque-forming units (p.f.u.)/ml. Uninfected yearling sockeye salmon held in a box in the side channel developed localized gill infections with IHN virus. The disease did not progress to the viscera until a threshold titre of about 105 p.f.u./g was reached in the gill. The effectiveness of the gill as a barrier limiting development of systemic infections means that waterborne IHN virus probably does not greatly increase the infection rate in a sockeye salmon population during spawning.

  5. Comparison of biochemical parameters of rainbow trout (Oncorhynchus mykiss) reared in two different trout farms'

    NASA Astrophysics Data System (ADS)

    Karatas, Tayfun

    2016-04-01

    The aim of this study was to compare biochemical parameters of cultured rainbow trouts (Oncorhynchus mykiss, Walbaum, 1972) reared in two different trout farms' (Agri and Erzurum). The average weights of fish were 150±10gr for first station (Agri), 230±10gr for second station (Erzurum). Fishes used in research were randomly caught from pools, and fifteen pieces were used for each group. Fishes were fed with commercial trout feed with 45-50% crude protein twice a day. The levels of AST, ALT, LDL, total cholesterol and triglyceride in the second station (Erzurum) were found to be higher (p<0.05) than that of first station (Agri). Whereas, the levels of HDL in the second station (Erzurum) were found to be lower (p<0.05) than that of first station (Agri). Differences in the levels of total cholesterol and AST, ALT, HDL, LDL, triglyceride may be associated with size, sex, sexual maturity and environmental conditions (temperature, pH, hardness and dissolved oxygen).

  6. Status, distribution and morphometric/meristic characteristics of Cobitis elongata Heckel et Kner 1858 from Slovenia.

    PubMed

    Povz, Meta; Sumer, Suzana

    2003-01-01

    Cobitis elongata Heckel et Kner inhabits the rivers Sava, Kolpa, Krka, Gracnica and Hudinja (the Danube river basin). The species is common in its distribution area. In the Red List of endangered Pisces and Cyclostomata in Slovenia, it is classified as endangered. Status and distribution data of the species from previous reports and recent research were summarized. A total of 31 specimens from the river Kolpa were morphologically studied. Sixteen morphometric and four meristic characteristics were analysed using standard numerical taxonomic techniques. 99.8% of the total variation of standard length was explained by preanal distance, dorsal and ventral fin lengths as well as minimum body height.

  7. Additive genetic variation for tolerance to estrogen pollution in natural populations of Alpine whitefish (Coregonus sp., Salmonidae).

    PubMed

    Brazzola, Gregory; Chèvre, Nathalie; Wedekind, Claus

    2014-11-01

    The evolutionary potential of natural populations to adapt to anthropogenic threats critically depends on whether there exists additive genetic variation for tolerance to the threat. A major problem for water-dwelling organisms is chemical pollution, and among the most common pollutants is 17α-ethinylestradiol (EE2), the synthetic estrogen that is used in oral contraceptives and that can affect fish at various developmental stages, including embryogenesis. We tested whether there is variation in the tolerance to EE2 within Alpine whitefish. We sampled spawners from two species of different lakes, bred them in vitro in a full-factorial design each, and studied growth and mortality of embryos. Exposure to EE2 turned out to be toxic in all concentrations we tested (≥1 ng/L). It reduced embryo viability and slowed down embryogenesis. We found significant additive genetic variation in EE2-induced mortality in both species, that is, genotypes differed in their tolerance to estrogen pollution. We also found maternal effects on embryo development to be influenced by EE2, that is, some maternal sib groups were more susceptible to EE2 than others. In conclusion, the toxic effects of EE2 were strong, but both species demonstrated the kind of additive genetic variation that is necessary for an evolutionary response to this type of pollution.

  8. Functional convergence among pelagic sculpins of Lake Baikal and deepwater ciscoes of the Great Lakes

    USGS Publications Warehouse

    Eshenroder, Randy L.; Sideleva, Valentina G.; Todd, Thomas N.

    1999-01-01

    The vast, well-oxygenated hypolimnia of Lake Baikal and the Great Lakes were both dominated by endemic planktivorous fishes. These dominants, two species of sculpins (Comephorus, Comephoridae) in Lake Baikal and six species of deepwater ciscoes (Coregonus, Salmonidae) in the Great Lakes, although distant taxonomically, have morphologies suggesting a surprising degree of functional convergence. Here it is proposed that the same two buoyancy-regulation strategies observed in Baikal sculpins also arose in the deepwater ciscoes of the Great Lakes. One strategy favors hydrostatic lift (generated by low specific gravity) and is characterized by fatter, larger-bodied fish with smaller paired fins; the second strategy favors hydrodynamic lift (generated by swimming) and is characterized by leaner, smaller-bodied fish with larger paired fins. Both types likely evolved to feed on a single species of ecologically analogous, vertically migrating macrozooplankter: Macrohectopus branickii in Lake Baikal and Mysis relicta in the Great Lakes. It is suggested that Coregonus did not diversify and proliferate in Lake Baikal as they did in the Great Lakes because by the time Coregonus colonized Lake Baikal, pelagic sculpins were already dominant.

  9. [Updating the larval habitats of Aedes aegypti (Diptera: Culicidae) in Camagüey, Cuba].

    PubMed

    Diéguez, Lorenzo; Pino, Rafael; Andrés, Julio; Hernández, Arturo; Alarón-Elbal, Pedro Mª; San Martín, José L

    2016-12-01

    Several illnesses of vectorial origin have a great medical and veterinary relevance, due to the adaptations developed by the species involved in their transmission. To support preventive programs with updated ecological information of Ae. aegypti populations, an entomological survey was carried out in three Health Areas of Camagüey, Cuba, during low and high rain seasons of 2013. For this, we assessed the type and number of positive containers, quantified larvae and pupae in positive containers, according to the container location in or outside the house. Both the container representativeness percentage and the pupal index by specific containers were calculated (PIsC). The total of houses as well as the positive habitual-use and non-disposable containers were compared among weather seasons, using the non parametric Chi2 test. The existent relationship between the total of positive houses and the habitual-use and non-disposable container was explored through the test of proportions hypothesis, with a level of significance of P ≤ 0.05. Ae. aegypti colonized 73 different types of containers, being habitual-use and non-disposable a 23.2 %. This number included 76 % of the positive containers. The greatest larvae collections were obtained in exterior water tanks and barrels, with important pupal production (PIsC = 3.04 and 1.75, respectively), and as well as significant differences towards the rainy season respect to positive houses (PUIA: Chi2 = 32.89; P = 0.00; PUE: Chi2 = 127.44; P = 0.00 and PUJAM: Chi2 = 127.44; P = 0.00), and the habitual-use and non-disposable container (PUIA: Chi2 = 30.37; P = 0.00; PUE: Chi2 = 37.26; P = 0.00 and PUJAM: Chi2 = 81.82; P = 0.00). These data reinforce the priority given to the control and surveillance actions conducted by the community in their respective houses.

  10. Quality assurance and control issues for HF radar wave and current measurements

    NASA Astrophysics Data System (ADS)

    Wyatt, Lucy

    2015-04-01

    HF radars are now widely used to provide surface current measurements over wide areas of the coastal ocean for scientific and operational applications. In general data quality is acceptable for these applications but there remain issues that impact on the quantity and quality of the data. These include problems with calibration and interference which impact on both phased array (e.g. WERA, Pisces) and direction-finding (e.g. SeaSonde) radars. These same issues and others (e.g. signal-to-noise, in-cell current variability, antenna sidelobes) also impact on the quality and quantity of wave data that can be obtained. These issues will be discussed in this paper, illustrated with examples from deployments of WERA, Pisces and SeaSonde radars in the UK, Europe, USA and Australia. These issues involve both quality assurance (making sure the radars perform to spec and the software is fully operational) and in quality control (identifying problems with the data due to radar hardware or software performance issues and flagging these in the provided data streams). Recommendations for the former, and current practice (of the author and within the Australian Coastal Ocean Radar Network, ACORN*) for the latter, will be discussed. The quality control processes for wave measurement are not yet as well developed as those for currents and data from some deployments can be rather noisy. Some new methods, currently under development by SeaView Sensing Ltd and being tested with ACORN data, will be described and results presented. *ACORN is a facility of the Australian Integrated Marine Observing System, IMOS. IMOS is a national collaborative research infrastructure, supported by Australian Government. It is led by University of Tasmania in partnership with the Australian marine and climate science community.

  11. The Extended Halo of Centaurus A: Uncovering Satellites, Streams, and Substructures

    NASA Astrophysics Data System (ADS)

    Crnojević, D.; Sand, D. J.; Spekkens, K.; Caldwell, N.; Guhathakurta, P.; McLeod, B.; Seth, A.; Simon, J. D.; Strader, J.; Toloba, E.

    2016-05-01

    We present the widest-field resolved stellar map to date of the closest (D˜ 3.8 Mpc) massive elliptical galaxy NGC 5128 (Centaurus A; Cen A), extending out to a projected galactocentric radius of ˜150 kpc. The data set is part of our ongoing Panoramic Imaging Survey of Centaurus and Sculptor (PISCeS) utilizing the Magellan/Megacam imager. We resolve a population of old red giant branch (RGB) stars down to ˜1.5 mag below the tip of the RGB, reaching surface brightness limits as low as {μ }V,0˜ 32 mag arcsec-2. The resulting spatial stellar density map highlights a plethora of previously unknown streams, shells, and satellites, including the first tidally disrupting dwarf around Cen A (CenA-MM-Dw3), which underline its active accretion history. We report 13 previously unknown dwarf satellite candidates, of which 9 are confirmed to be at the distance of Cen A (the remaining 4 are not resolved into stars), with magnitudes in the range {M}V=-7.2 to -13.0, central surface brightness values of {μ }V,0=25.4{--}26.9 mag arcsec-2, and half-light radii of {r}h=0.22{--}2.92 {{kpc}}. These values are in line with Local Group dwarfs but also lie at the faint/diffuse end of their distribution; interestingly, CenA-MM-Dw3 has similar properties to the recently discovered ultradiffuse galaxies in Virgo and Coma. Most of the new dwarfs are fainter than the previously known Cen A satellites. The newly discovered dwarfs and halo substructures are discussed in light of their stellar populations, and they are compared to those discovered by the PAndAS survey of M31. This paper includes data gathered with the 6.5 m Magellan Telescopes located at Las Campanas Observatory, Chile.

  12. Shillapoo Wildlife Area, Annual Report 2006-2007.

    DOE Office of Scientific and Technical Information (OSTI.GOV)

    Calkins, Brian

    This report summarizes accomplishments, challenges and successes on WDFW's Shillapoo Wildlife Area funded under Bonneville Power Administration's (BPA) Wildlife Mitigation Program (BPA project No.2003-012-00) during the Fiscal Year 07 contract period October 1, 2006-September 30, 2007. The information presented here is intended to supplement that contained in BPA's PISCES contract development and reporting system. The organization below is by broad categories of work but references are made to individual work elements in the PISCES Statement of Work as appropriate. The greatest success realized during this contract period was significant positive changes in the vegetative community in several wetland basins throughoutmore » the wildlife area. This major goal is being achieved in part by new equipment and operation capability funded under the BPA contract, state capital and migratory bird stamp funds, and the past or ongoing investment of other partners including Ducks Unlimited, The Natural Resources Conservation Service (NRCS), Clark Public Utilities and others. We continue to be challenged by requirements under the archaeological and historic preservation act necessary to protect many sensitive sites known to occur within the wildlife area. The problems encountered to date have been largely administrative in nature and those experienced this year were unforeseen and probably unavoidable. Early in the contract period, WDFW and BPA had agreed to have a BPA staff archaeologist perform the survey and reporting work. Unexpectedly, just prior to the expected start date for the surveys, the employee resigned leaving BPA's staff short handed and necessitated contracting the work with an archaeological consultant. This delay caused us to forego work on several projects that are now deferred until the next contract period. The most notable projects impacted by this unfortunate circumstance are those involving the construction or repair of fences.« less

  13. Mapping Milky Way Halo Structure with Blue Horizontal Branch Stars

    NASA Astrophysics Data System (ADS)

    Martin, Charles; Newberg, Heidi Jo; Carlin, Jeffrey L.

    2017-01-01

    The use of blue horizontal brach (BHB) and red giant branch stars as tracers of stellar debris streams is a common practice and has been useful in the confirmation of kinematic properties of previously identified streams. This work explores less common ways of untangling the velocity signatures of streams traveling radially to our line of sight, and to peer toward the higher density region of the Galactic Center using data from the Sloan Digital Sky Survey (SDSS). Using spectra of BHB stars, we are able to kinematically distinguish moving groups in the Milky Way halo. The results of this thesis advance our knowledge of the following stellar halo substructures: the Pisces Stellar Stream, the Hercules-Aquila Cloud, the Hercules Halo Stream, and the Hermus Stream. A study of red giant stars led to the kinematic discovery of the Pisces Stellar Stream. Red giant stars were also examined to determine that the previously identified velocity signature that was suggested for the Hercules-Aquila Cloud was due to disk star contamination and errors in preliminary SDSS velocities. The Hercules Halo Stream is a previously unidentified structure that could be related to the Hercules-Aquila Cloud, and was discovered as a velocity excess of SDSS BHB stars. We identify a group of 10 stars with similar velocities that are spatially coincident with the Hermus Stream. An orbit is fit to the Hermus Stream that rules out a connection with the Phoenix Stream.This work was supported by NSF grants AST 09-37523, 14-09421, 16-15688, the NASA/NY Space Grant fellowship, and contributions made by The Marvin Clan, Babette Josephs, Manit Limlamai, and the 2015 Crowd Funding Campaign to Support Milky Way Research.

  14. LBT observations of the HR8799 planetary system

    NASA Astrophysics Data System (ADS)

    Mesa, D.; Arcidiacono, C.; Claudi, R. U.; Desidera, S.; Esposito, S.; Gratton, R.; Masciadri, E.

    2013-09-01

    We present here observations of the HR8799 planetary system performed in H and Ks band exploiting the AO system at the Large Binocular Telescope and the PISCES camera. Thanks to the excellent performence of the instrument we were able to detect for the first time the inner known planet of the system (HR8799) in the H band. Precise photometric and astrometric measures have been taken for all the four planets. Further, exploiting ours and previous astrometric results, we were able to put some limits on the planetary orbits of the four planets. The analysis of the dinamical stability of the system seems to show lower planetary masses than the ones adopted until now.

  15. Three new species of Trimma (Pisces; Gobioidei) from Indonesia.

    PubMed

    Winterbottom, Richard; Erdmann, Mark V; Cahyani, N K Dita

    2014-07-18

    Three new species of Trimma are described from various localities in Indonesia. All three can be readily identified from their live, freshly collected, or preserved colouration. Trimma meranyx n. sp. is further distinguished from other species by the possession of 8-9 scales in the predorsal midline, up to three rows of (usually) cycloid scales on the opercle, two scales at the posterodorsal border of the cheek, a very slightly elongate second dorsal spine which only just reaches the spine or anterior rays of the second dorsal fin, unbranched pectoral fin rays, a fifth pelvic fin ray that branches once and is 64-85% the length of the fourth ray, and a full basal membrane connecting the inner branches of the two fifth pelvic rays. The dark red (live) or black posterior half of the caudal peduncle with large white spots straddling the dorsal and ventral midlines just anterior to the first procurrent caudal fin rays is the diagnostic colour character. The species is known from North Sulawesi, West Papua (Raja Ampat and Fakfak), and the south-eastern tip of Papua New Guinea, with possible records from the Philippines and Vanuatu. Trimma pajama n. sp. has 6 scales in the predorsal midline, two ctenoid scales along the dorsal margin of the opercle, a slightly elongate second dorsal spine reaching posteriorly to the base of the spine or first ray of the second dorsal fin, unbranched pectoral fin rays, a fifth pelvic ray with a single branch point and which is 58-72% the length of the fourth ray, and a full basal membrane connecting the inner branches of the two fifth pelvic rays. The live, freshly collected and preserved colour pattern of alternating dark and light stripes on the head and most of the body (except the posterior half of the caudal peduncle) is diagnostic. It is currently known from West Papua (Raja Ampat and Fakfak) and the southern tip of Papua New Guinea, with possible records from Kalimantan (Indonesia), Palau, the Hermit Is (Papua New Guinea) and the Solomon Islands. Trimma zurae n. sp. has 8-9 scales in the predorsal midline, usually a single row of cycloid scales along the upper border of the opercle, 11 anterior and 9 posterior transverse scale rows, no elongated spines in the first dorsal fin, 9 dorsal and 8 anal fin rays, the middle rays of the pectoral fin branched, a single branch in the fifth pelvic fin ray which is 65-76% the length of the fourth ray and a reduced basal membrane of < 20% the length of the fifth ray. The eye-diameter sized black ocellated spot between the first to fifth spines of the first dorsal fin is diagnostic, as are the pupil-diameter sized orange spots on the nape, opercle and posterodorsal part of the cheek. It is currently known only from a single locality just west of Manado, Sulawesi. 

  16. Relative gut lengths of coral reef butterflyfishes (Pisces: Chaetodontidae)

    NASA Astrophysics Data System (ADS)

    Berumen, M. L.; Pratchett, M. S.; Goodman, B. A.

    2011-12-01

    Variation in gut length of closely related animals is known to generally be a good predictor of dietary habits. We examined gut length in 28 species of butterflyfishes (Chaetodontidae), which encompass a wide range of dietary types (planktivores, omnivores, and corallivores). We found general dietary patterns to be a good predictor of relative gut length, although we found high variation among groups and covariance with body size. The longest gut lengths are found in species that exclusively feed on the living tissue of corals, while the shortest gut length is found in a planktivorous species. Although we tried to control for phylogeny, corallivory has arisen multiple times in this family, confounding our analyses. The butterflyfishes, a speciose family with a wide range of dietary habits, may nonetheless provide an ideal system for future work studying gut physiology associated with specialization and foraging behaviors.

  17. Snakeheads (Pisces, Channidae): A biological synopsis and risk assessment

    USGS Publications Warehouse

    Courtenay, Walter R.; Williams, James D.

    2004-01-01

    Snakeheads (family Channidae) are airbreathing freshwater fishes containing two genera, Channa with 26 species native to Asia, Malaysia, and Indonesia; and Parachanna with 3 species native to tropical Africa. Some snakeheads are small, reaching about 17 centimeters, but most are much larger, the largest reported to be 1.8 meters in length. All are considered thrust predators with most being piscivorous as adults. A few of the smaller snakeheads and colorful juveniles of some larger ones have been available to hobbyists through the aquarium fish trade. Several species are highly valued as food fishes within parts of their native ranges, especially in Asia where they are an important part of capture fisheries and aquaculture. Because of these uses by humans, introductions far beyond native ranges have occurred. One Asian snakehead has been established in Oahu, Hawaii, since before 1900. Another species was discovered established in southeastern Florida in 2000, and a third in a pond in Maryland in 2002. Others have been captured from natural waters of the United States without evidence of reproduction and likely represent released aquarium fishes. That snakeheads at or near sexual maturity were being sold alive in ethnic food markets raised fears that they could be introduced into novel waters. These concerns led to this study on the biology of snakeheads. A risk assessment is included that examines environmental and related aspects of snakehead introductions.

  18. MICROSATELLITE CHARACTERIZATION IN CENTRAL STONEROLLER CAMPOSTOMA ANOMALUM (PISCES: CYPRINIDAE)

    EPA Science Inventory

    The central stoneroller (Campostoma anomalum) is a small cyprinid fish that is native to streams and rivers of central and eastern North America. It can be found in a range of anthropo- genically modified habitats, ranging from nearly pristine to highly polluted waters (Zimmerma...

  19. A method to directly measure maximum volume of fish stomachs or digestive tracts

    USGS Publications Warehouse

    Burley, C.C.; Vigg, S.

    1989-01-01

    A new method for measuring maximum stomach or digestive tract volume of fish incorporates air injection at constant pressure with water displacement to measure directly the internal volume of a stomach or analogous structure. The method was tested with coho salmon, Oncorhynchus kisutch (Walbaum), which has a true stomach, and northern squawfish, Ptychocheilus oregonensis(Richardson), which has a modified foregut as a functional analogue. Both species were collected during July-October 1987 from the Columbia River, U.S.A. Relationships between fish weight (= volume) and maximum volume of the digestive organ were best fitted for coho salmon by an allometric model and for northern squawfish by an exponential model. Least squares regression analysis of individual measurements showed less variability in the volume of coho salmon stomachs (R2= 0.85) than in the total digestive tracts (R2= 0.55) and foreguts (R2= 0.61) of northern squawfish, relative to fish size. Compared to previous methods, the new technique has the advantage of accurately measuring the internal volume of a wide range of digestive organ shapes and sizes.

  20. Specific PCR for Myxobolus arcticus SSU rDNA in juvenile sockeye salmon Oncorhynchus nerka from British Columbia, Canada.

    PubMed

    Mahony, Amelia; Fraser, Sarah; Groman, David B; Jones, Simon R M

    2015-06-29

    A PCR for the specific detection of the salmon brain parasite Myxobolus arcticus (Pugachev and Khokhlov, 1979) was developed using primers designed to amplify a 1363 base pair fragment of the small subunit rDNA. The assay did not amplify DNA from 5 other Myxobolus species or from 7 other myxozoan species belonging to 5 other genera. For juvenile sockeye salmon Oncorhynchus nerka (Walbaum) collected from Chilko Lake, British Columbia (BC), Canada, in 2011, the prevalence by PCR was 96%, in contrast to 71% by histological examination of brain tissue. In 2010, the histological prevalence was 52.5%. Sequence identity between M. arcticus from Chilko Lake and other sites in BC ranged from 99.7 to 99.8% and was 99.6% for a Japanese sequence. In contrast, an M. arcticus sequence from Norway shared 95.3% identity with the Chilko Lake sequence, suggesting misidentification of the parasite. Chilko Lake sockeye salmon were previously reported free of infection with M. arcticus, and more research is required to understand the processes involved in the local and global dispersion of this parasite.

  1. Using a bioenergetic model to assess growth reduction from catch-and-release fishing and hooking injury in rainbow trout, Oncorhynchus mykiss

    USGS Publications Warehouse

    Meka, Julie M.; Margraf, F.J.

    2007-01-01

    A bioenergetic model was used to predict the potential effects of feeding cessation caused by catch-and-release capture and a reduction in feeding efficiency from hooking injuries on rainbow trout, Oncorhynchus mykiss (Walbaum), growth in southwest Alaska, USA. Simulations indicated that a 1-day feeding cessation for a rainbow trout captured one to two times during summer months resulted in deviations from expected growth of −3% to −15%. To represent debilitating hooking injuries, the proportion of the maximum feeding potential was decreased by 5–50% resulting in deviations from expected growth of −9% to −164%. Simulated growth effects were most prominent from captures during months when salmon eggs and flesh constituted the majority of the trout diet. Simulated growth effects from reduced foraging efficiency were most prominent when hooking injuries occurred early in the fishing season. These simulations suggest that rainbow trout are most vulnerable to decreases in growth when salmon are abundant and spawning and, coincidentally, during the months when most fishing occurs.

  2. Effect of catch-and-release angling on growth and survival of rainbow trout, Oncorhynchus mykiss

    USGS Publications Warehouse

    Pope, K.L.; Wilde, G.R.; Knabe, D.W.

    2007-01-01

    Catch-and-release angling is popular in many parts of the world and plays an increasingly important role in fish conservation efforts. Although survival rates associated with catch-and-release angling are well documented for many species, sublethal effects have been less studied. An experiment was conducted to directly assess the effects of catch-and-release angling on growth and survival of rainbow trout, Oncorhynchus mykiss (Walbaum). Catch-and-release events were simulated in laboratory tanks maintained at 15-16 ??C with hooks manually placed in pre-designated locations in the mouths of the fish. There were no differences in standard length (P = 0.59) or wet weight (P = 0.81) gained between caught and uncaught fish over a 1-month angling and recovery period. Survival was 96.99 ?? 0.06% for rainbow trout caught and released, and did not vary with number (one, two or four) of captures. Thus, catch-and-release angling appears to have little effect on growth and mortality of rainbow trout hooked in the mouth. ?? 2007 The Authors. Journal compilation 2007 Blackwell Publishing Ltd.

  3. Reciprocal subsidies and food web pathways leading to chum salmon fry in a temperate marine-terrestrial ecotone.

    PubMed

    Romanuk, Tamara N; Levings, Colin D

    2010-04-08

    Stable isotope analysis was used to determine the relative proportions of terrestrial and marine subsidies of carbon to invertebrates along a tidal gradient (low-intertidal, mid-intertidal, high-intertidal, supralittoral) and to determine the relative importance of terrestrial carbon in food web pathways leading to chum salmon fry Oncorhynchus keta (Walbaum) in Howe Sound, British Columbia. We found a clear gradient in the proportion of terrestrially derived carbon along the tidal gradient ranging from 68% across all invertebrate taxa in the supralittoral to 25% in the high-intertidal, 20% in the mid-intertidal, and 12% in the low-intertidal. Stable isotope values of chum salmon fry indicated carbon contributions from both terrestrial and marine sources, with terrestrially derived carbon ranging from 12.8 to 61.5% in the muscle tissue of chum salmon fry (mean 30%). Our results provide evidence for reciprocal subsidies of marine and terrestrially derived carbon on beaches in the estuary and suggest that the vegetated supralittoral is an important trophic link in supplying terrestrial carbon to nearshore food webs.

  4. Measurement of in vitro leucocyte mitogenesis in fish: ELISA based detection of the thymidine analogue 5'-bromo-2'-deoxyuridine

    USGS Publications Warehouse

    Gauthier, David T.; Cartwright, Deborah D.; Densmore, Christine L.; Blazer, Vicki; Ottinger, Christopher A.

    2003-01-01

    In this study we present a method for the measurement of in vitro mitogenesis in fish leucocytes that is based on the incorporation of the thymidine analogue 5′-bromo-2′-deoxyuridine (BrdU) into the DNA of replicating cells, followed by ELISA-based detection. This technique, adapted from methods developed for mammalian cells, operates on a similar biological principle to 3H-thymidine incorporation, but circumvents the logistical and safety issues inherent with the radioactive label. Because it directly measures DNA proliferation, the assay has advantages over other colorimetric methods that may be strongly influenced by leucocyte metabolic status. Using BrdU incorporation followed by ELISA, we evaluate the responsiveness of rainbow trout (Oncorhynchus mykiss [Walbaum]) leucocytes to the mammalian T-cell mitogen Concanavalin A (Con A) as well as the differential response of white perch (Morone americana [Gmelin]) leucocytes to Con A and pokeweed mitogen. Specific considerations intrinsic to the assay system are discussed, including the implications of utilising enzyme-based detection.

  5. [Mutation analysis of FAH gene in patients with tyrosinemia type 1].

    PubMed

    Dou, Li-Min; Fang, Ling-Juan; Wang, Xiao-Hong; Lu, Wei; Chen, Rui; Li, Li-Ting; Zhao, Jing; Wang, Jian-She

    2013-04-01

    To investigate the clinical features and mutations of the FAH gene. Clinical records of two cases were collected, and diagnosis was made according to the diagnostic criteria of the International Organization for Rare Disorders (NORD). Genomic DNA was extracted from peripheral blood leukocytes with QIAamp DNA Mini Kit. The DNA extracts were subjected to direct sequencing for 14 exons together with adjacent fragments of FAH gene using ABI Prism 3730 Genetic Analyzer (Applied Biosystems, Foster City, CA) after PCR based on genomic DNA. The mutation source was verified by analyzing parents' exons corresponding to patients' mutation exons. The homology between human FAH enzyme and that of other species was surveyed using software Clustal X(European Bioinformatics Institute, Hinxton, Saffron Walde, UK). Polyphen (Polymorphism Phenotyping), available online, were used to predict possible impact of an amino acid substitution on structure and function of FAH enzyme. Polyphen calculates position-specific independent counts (PISC) scores for two amino acid variants in polymorphic position. A PISC scores that differ by > 2 were regarded as indicating the probability of damaging variants. Patient 1 was a 5 months and 21 days-old boy who suffered from persistent diarrhea, hepatomegaly, ascites; Alpha-fetoprotein > 1210 µg/L, levels of tyrosine in blood and succinylacetone in urine were 110.8 µmol/L and 83.7 µmol/L. His sister suffered from tyrosinemia type 1. Direct sequencing showed a G to A transition in CDS position 455 and 1027. He was compound heterozygous for the mutation c.455G > A/c.1027G > A, which predicts a change from tryptophan to a stop codon (TGG > TAG) at position 152 (W152X) and a change from glycine to arginine (GGG > AGG) at position 343 respectively. Patient 2 was a 6 year and 1 month-old girl with late-onset rickets who had signs of hepatosplenomegaly, rachitic rosary, windswept knees. Hypophosphatemia and alkaline phosphatase 1620 IU/L were detected

  6. Predicting the velocity and azimuth of fragments generated by the range destruction or random failure of rocket casings and tankage

    NASA Technical Reports Server (NTRS)

    Eck, Marshall; Mukunda, Meera

    1988-01-01

    A calculational method is described which provides a powerful tool for predicting solid rocket motor (SRM) casing and liquid rocket tankage fragmentation response. The approach properly partitions the available impulse to each major system-mass component. It uses the Pisces code developed by Physics International to couple the forces generated by an Eulerian-modeled gas flow field to a Lagrangian-modeled fuel and casing system. The details of the predictive analytical modeling process and the development of normalized relations for momentum partition as a function of SRM burn time and initial geometry are discussed. Methods for applying similar modeling techniques to liquid-tankage-overpressure failures are also discussed. Good agreement between predictions and observations are obtained for five specific events.

  7. Reduction of leakage current at the gate edge of SDB SOI NMOS transistor

    NASA Astrophysics Data System (ADS)

    Kang, Sung-Weon; Lyu, Jong-Son; Kang, Jin-Young; Kang, Sang-Won; Lee, Jin-Hyo

    1995-06-01

    Leakage current through the parasitic channel formed at the sidewall of the SOI active region has been investigated by measuring the subthreshold I-V characteristics. Partially depleted (PD, approximately 2500 Angstrom) and fully depleted (FD, approximately 800 Angstrom) SOI NMOS transistors of enhancement mode have been fabricated using the silicon direct bonding (SDB) technology. Isolation processes for the SOI devices were LOCOS, LOCOS with channel stop ion implantation or fully recessed trench (FRT). The electron concentration of the parasitic channel is calculated by the PISCES Ilb simulation. As a result, leakage current of the FD mode SOI device with FRT isolation at the front and back gate biases of 0 V was reduced to approximately pA and no hump was seen on the drain current curve.

  8. Morphological and molecular identification of the fish-borne metacercaria of Ascocotyle (Phagicola) longa Ransom, 1920 in Mugil liza from Argentina.

    PubMed

    Martorelli, S R; Lino, A; Marcotegui, P; Montes, M M; Alda, P; Panei, C J

    2012-12-21

    This is the first report of Ascocotyle (Phagicola) longa Ransom, 1920 (Digenea: Heterophyidae) in Argentina confirmed by morphological and molecular studies. The metacercaria was found encysted in myotomal musculature, heart and mesentery of the mullet Mugil liza (Pisces: Mugilidae) from Samborombon bay. We provide a morphological description of the metacercaria which we identified using species-specific primers for A. (Phagicola) longa and nucleotid sequence. This worldwide parasite has been reported as one of the causative agents of heterophyiosis, an emerging fish-borne disease of humans, contracted by the consumption of raw mullet. The discovery of A. (Phagicola) longa in Argentina represents a warning of the potentially great impact of this parasite on public health. Copyright © 2012 Elsevier B.V. All rights reserved.

  9. Lava Tubes as Martian Analog sites on Hawaii Island

    NASA Astrophysics Data System (ADS)

    Andersen, Christian; Hamilton, J. C.; Adams, M.

    2013-10-01

    The existence of geologic features similar to skylights seen in Mars Reconnaissance Orbiter HIRISE imagery suggest Martian lava tube networks. Along with pit craters, these features are evidence of a past era of vulcanism. If these were contemporary with the wet Mars eras, then it is suggestive that any Martian life may have retreated into these subsurface oases. Hawaii island has numerous lava tubes of differing ages, humidity, lengths and sizes that make ideal analog test environments for future Mars exploration. PISCES has surveyed multiple candidate sites during the past summer with a team of University of Hawaii at Hilo student interns. It should be noted that Lunar features have also been similarly discovered via Lunar Reconnaissance Orbiter LROC imagery.

  10. Immunization of rainbow trout Oncorhynchus mykiss (Walbaum) with a crude lipopolysaccharide extract from Flavobacterium psychrophilum

    USDA-ARS?s Scientific Manuscript database

    Control methods for Flavobacterium psychrophilum, the etiologic agent of bacterial coldwater disease (CWD) and rainbow trout fry syndrome, are limited and oftentimes ineffective; hence, research efforts have focused on vaccine development. This study tested the hypothesis that a crude lipopolysacch...

  11. An experimental vaccine against Aeromonas hydrophila can induce protection in rainbow trout, Oncorhynchus mykiss (Walbaum)

    USGS Publications Warehouse

    LaPatra, S.E.; Plant, K.P.; Alcorn, S.; Ostland, V.; Winton, J.

    2010-01-01

    A candidate vaccine against Aeromonas hydrophila in rainbow trout, Oncorhynchus mykiss, was developed using a bacterial lysate. To test the strength of protection, A. hydrophila challenge models were compared using injection into both the intraperitoneal (IP) cavity and the dorsal sinus (DS) with selected doses of live bacteria washed in saline or left untreated. Unlike the IP route, injection into the DS with either saline washed or unwashed cells resulted in consistent cumulative mortality and a dose response that could be used to establish a standard challenge having an LD50 of approximately 3 × 107 colony forming units per fish. Survivors of the challenge suffered significantly lower mortality upon re-challenge than naïve fish, suggesting a high level of acquired resistance was elicited by infection. Passive immunization using serum from hyper-immunized fish also resulted in significantly reduced mortality indicating protection can be transferred and that some portion of resistance may be antibody mediated. Vaccination of groups of rainbow trout with A. hydrophila lysate resulted in significant protection against a high challenge dose but only when injected along with Freund’s complete adjuvant. At a low challenge dose, mortality in all groups was low, but the bacterial lysate alone appeared to offer some protection.

  12. Comparative analysis of complete mitochondrial genomes suggests that relaxed purifying selection is driving high nonsynonymous evolutionary rate of the NADH2 gene in whitefish (Coregonus ssp.).

    PubMed

    Jacobsen, Magnus W; da Fonseca, Rute R; Bernatchez, Louis; Hansen, Michael M

    2016-02-01

    Several studies have recently reported evidence for positive selection acting on the mitochondrial genome (mitogenome), emphasizing its potential role in adaptive divergence and speciation. In this study we searched 107 full mitogenomes of recently diverged species and lineages of whitefish (Coregonus ssp.) for signals of positive selection. These salmonids show several distinct morphological and ecological differences that may be associated with energetics and therefore potentially positive selection at the mitogenome level. We found that purifying selection and genetic drift were the predominant evolutionary forces acting on the analyzed mitogenomes. However, the NADH dehydrogenase 2 gene (ND2) showed a highly elevated dN/dS ratio compared to the other mitochondrial genes, which was significantly higher in whitefish compared to other salmonids. We therefore further examined nonsynonymous evolution in ND2 by (i) mapping amino acid changes to a protein model structure which showed that they were located away from key functional residues of the protein, (ii) locating them in the sequences of other species of fish (Salmonidae, Anguillidae, Scombridae and Percidae) only to find pronounced overlap of nonsynonymous regions. We thus conclude that relaxed purifying selection is driving the evolution of ND2 by affecting mostly regions that have lower functional relevance. Copyright © 2015 Elsevier Inc. All rights reserved.

  13. Environmental effects on fish neural plasticity and cognition.

    PubMed

    Ebbesson, L O E; Braithwaite, V A

    2012-12-01

    Most fishes experiencing challenging environments are able to adjust and adapt their physiology and behaviour to help them cope more effectively. Much of this flexibility is supported and influenced by cognition and neural plasticity. The understanding of fish cognition and the role played by different regions of the brain has improved significantly in recent years. Techniques such as lesioning, tract tracing and quantifying changes in gene expression help in mapping specialized brain areas. It is now recognized that the fish brain remains plastic throughout a fish's life and that it continues to be sensitive to environmental challenges. The early development of fish brains is shaped by experiences with the environment and this can promote positive and negative effects on both neural plasticity and cognitive ability. This review focuses on what is known about the interactions between the environment, the telencephalon and cognition. Examples are used from a diverse array of fish species, but there could be a lot to be gained by focusing research on neural plasticity and cognition in fishes for which there is already a wealth of knowledge relating to their physiology, behaviour and natural history, e.g. the Salmonidae. © 2012 The Authors. Journal of Fish Biology © 2012 The Fisheries Society of the British Isles.

  14. Factors mediating co-occurrence of an economically valuable introduced fish and its native frog prey.

    PubMed

    Hartman, Rosemary; Pope, Karen; Lawler, Sharon

    2014-06-01

    Habitat characteristics mediate predator-prey coexistence in many ecological systems but are seldom considered in species introductions. When economically important introduced predators are stocked despite known negative impacts on native species, understanding the role of refuges, landscape configurations, and community interactions can inform habitat management plans. We measured these factors in basins with introduced trout (Salmonidae) and the Cascades frog (Rana cascadae) to determine, which are responsible for observed patterns of co-occurrence of this economically important predator and its native prey. Large, vegetated shallows were strongly correlated to co-occurrence, and R. cascadae larvae occur in shallower water when fish are present, presumably to escape predation. The number of nearby breeding sites of R. cascadae was also correlated to co-occurrence, but only when the western toad (Anaxyrus boreas) was present. Because A. boreas larvae are unpalatable to fish and resemble R. cascadae, they may provide protection from trout via Batesian mimicry. Although rescue-effect dispersal from nearby populations may maintain co-occurrence, within-lake factors proved more important for predicting co-occurrence. Learning which factors allow co-occurrence between economically important introduced species and their native prey enables managers to make better-informed stocking decisions. © 2013 Society for Conservation Biology.

  15. Candidate genes and adaptive radiation: insights from transcriptional adaptation to the limnetic niche among coregonine fishes (Coregonus spp., Salmonidae).

    PubMed

    Jeukens, Julie; Bittner, David; Knudsen, Rune; Bernatchez, Louis

    2009-01-01

    In the past 40 years, there has been increasing acceptance that variation in levels of gene expression represents a major source of evolutionary novelty. Gene expression divergence is therefore likely to be involved in the emergence of incipient species, namely, in a context of adaptive radiation. In the lake whitefish species complex (Coregonus clupeaformis), previous microarray experiments have led to the identification of candidate genes potentially implicated in the parallel evolution of the limnetic dwarf lake whitefish, which is highly distinct from the benthic normal lake whitefish in life history, morphology, metabolism, and behavior, and yet diverged from it only approximately 15,000 years before present. The aim of the present study was to address transcriptional divergence for six candidate genes among lake whitefish and European whitefish (Coregonus lavaretus) species pairs, as well as lake cisco (Coregonus artedi) and vendace (Coregonus albula). The main goal was to test the hypothesis that parallel phenotypic adaptation toward the use of the limnetic niche in coregonine fishes is accompanied by parallelism in candidate gene transcription as measured by quantitative real-time polymerase chain reaction. Results obtained for three candidate genes, whereby parallelism in expression was observed across all whitefish species pairs, provide strong support for the hypothesis that divergent natural selection plays an important role in the adaptive radiation of whitefish species. However, this parallelism in expression did not extend to cisco and vendace, thereby infirming transcriptional convergence between limnetic whitefish species and their limnetic congeners for these genes. As recently proposed (Lynch 2007a. The evolution of genetic networks by non-adaptive processes. Nat Rev Genet. 8:803-813), these results may suggest that convergent phenotypic evolution can result from nonadaptive shaping of genome architecture in independently evolved coregonine lineages.

  16. Organochlorine contaminants in different tissues from Platichthys flesus (Pisces, Pleuronectidea).

    PubMed

    Baptista, Joana; Pato, Pedro; Duarte, Armando C; Pardal, Miguel A

    2013-11-01

    Polychlorinated biphenyls (PCBs) and hexachlorobenzene (HCB) are organic contaminants that tend to accumulate in fish. Estuaries are exposed to high anthropogenic activities, therefore tending to accumulate more contaminants than the adjacent coastal waters. Platichthys flesus, a fish with high economic value, was analysed for PCBs and HCB along its different age groups, in liver, gills, gonads and muscle. Younger fishes were caught in the estuary, whereas older fishes were caught in the adjacent coastal waters and acquired at Figueira da Foz Regional Office of Docapesca-Portos e Lotas, SA. Both contaminants concentrations follow the pattern: liver>gills>muscle. Hepatosomatic index had the lowest values in younger fishes and the highest values in older fishes. Condition factor values remain stable with age. Younger fishes had higher PCBs concentrations than the older fishes. In opposition HCB was only detected in fish from 3+ to 5+ and its concentration tended to increase with age. Overall P. flesus is considered safe for human intake. Copyright © 2013 Elsevier Ltd. All rights reserved.

  17. DISCOVERY OF A CLOSE PAIR OF FAINT DWARF GALAXIES IN THE HALO OF CENTAURUS A

    DOE Office of Scientific and Technical Information (OSTI.GOV)

    Crnojević, D.; Sand, D. J.; Caldwell, N.

    2014-11-10

    As part of the Panoramic Imaging Survey of Centaurus and Sculptor (PISCeS), we report the discovery of a pair of faint dwarf galaxies (CenA-MM-Dw1 and CenA-MM-Dw2) at a projected distance of ∼90 kpc from the nearby elliptical galaxy NGC 5128 (CenA). We measure a tip of the red giant branch distance to each dwarf, finding D = 3.63 ± 0.41 Mpc for CenA-MM-Dw1 and D = 3.60 ± 0.41 Mpc for CenA-MM-Dw2, both of which are consistent with the distance to NGC 5128. A qualitative analysis of the color-magnitude diagrams indicates stellar populations consisting of an old, metal-poor red giant branch (≳12 Gyr, [Fe/H] ∼ –1.7 to –1.9). In addition, CenA-MM-Dw1more » seems to host an intermediate-age population as indicated by its candidate asymptotic giant branch stars. The derived luminosities (M{sub V} = –10.9 ± 0.3 for CenA-MM-Dw1 and –8.4 ± 0.6 for CenA-MM-Dw2) and half-light radii (r{sub h} = 1.4 ± 0.04 kpc for CenA-MM-Dw1 and 0.36 ± 0.08 kpc for CenA-MM-Dw2) are consistent with those of Local Group dwarfs. CenA-MM-Dw1's low central surface brightness (μ {sub V,} {sub 0} = 27.3 ± 0.1 mag arcsec{sup –2}) places it among the faintest and most extended M31 satellites. Most intriguingly, CenA-MM-Dw1 and CenA-MM-Dw2 have a projected separation of only 3 arcmin (∼3 kpc): we are possibly observing the first, faint satellite of a satellite in an external group of galaxies.« less

  18. Assessing the living and dead proportions of cold-water coral colonies: implications for deep-water Marine Protected Area monitoring in a changing ocean.

    PubMed

    Vad, Johanne; Orejas, Covadonga; Moreno-Navas, Juan; Findlay, Helen S; Roberts, J Murray

    2017-01-01

    Coral growth patterns result from an interplay of coral biology and environmental conditions. In this study colony size and proportion of live and dead skeletons in the cold-water coral (CWC) Lophelia pertusa (Linnaeus, 1758) were measured using video footage from Remotely Operated Vehicle (ROV) transects conducted at the inshore Mingulay Reef Complex (MRC) and at the offshore PISCES site (Rockall Bank) in the NE Atlantic. The main goal of this paper was to explore the development of a simple method to quantify coral growth and its potential application as an assessment tool of the health of these remote habitats. Eighteen colonies were selected and whole colony and dead/living layer size were measured. Live to dead layer ratios for each colony were then determined and analysed. The age of each colony was estimated using previously published data. Our paper shows that: (1) two distinct morphotypes can be described: at the MRC, colonies displayed a 'cauliflower-shaped' morphotype whereas at the PISCES site, colonies presented a more flattened 'bush-shaped' morphotype; (2) living layer size was positively correlated with whole colony size; (3) live to dead layer ratio was negatively correlated to whole colony size; (4) live to dead layer ratio never exceeded 0.27. These results suggest that as a colony develops and its growth rate slows down, the proportion of living polyps in the colony decreases. Furthermore, at least 73% of L. pertusa colonies are composed of exposed dead coral skeleton, vulnerable to ocean acidification and the associated shallowing of the aragonite saturation horizon, with significant implications for future deep-sea reef framework integrity. The clear visual contrast between white/pale living and grey/dark dead portions of the colonies also gives a new way by which they can be visually monitored over time. The increased use of marine autonomous survey vehicles offers an important new platform from which such a surveying technique could be

  19. Spatial and body-size dependent response of marine pelagic communities to projected global climate change.

    PubMed

    Lefort, Stelly; Aumont, Olivier; Bopp, Laurent; Arsouze, Thomas; Gehlen, Marion; Maury, Olivier

    2015-01-01

    Temperature, oxygen, and food availability directly affect marine life. Climate models project a global warming of the ocean's surface (~+3 °C), a de-oxygenation of the ocean's interior (~-3%) and a decrease in total marine net primary production (~-8%) under the 'business as usual' climate change scenario (RCP8.5). We estimated the effects of these changes on biological communities using a coupled biogeochemical (PISCES)--ecosystems (APECOSM) model forced by the physical outputs of the last generation of the IPSL-CM Earth System Model. The APECOSM model is a size-structured bio-energetic model that simulates the 3D dynamical distributions of three interactive pelagic communities (epipelagic, mesopelagic, and migratory) under the effects of multiple environmental factors. The PISCES-APECOSM model ran from 1850 to 2100 under historical forcing followed by RCP8.5. Our RCP8.5 simulation highlights significant changes in the spatial distribution, biomass, and maximum body-size of the simulated pelagic communities. Biomass and maximum body-size increase at high latitude over the course of the century, reflecting the capacity of marine organisms to respond to new suitable environment. At low- and midlatitude, biomass and maximum body-size strongly decrease. In those regions, large organisms cannot maintain their high metabolic needs because of limited and declining food availability. This resource reduction enhances the competition and modifies the biomass distribution among and within the three communities: the proportion of small organisms increases in the three communities and the migrant community that initially comprised a higher proportion of small organisms is favored. The greater resilience of small body-size organisms resides in their capacity to fulfill their metabolic needs under reduced energy supply and is further favored by the release of predation pressure due to the decline of large organisms. These results suggest that small body-size organisms might be

  20. Studies on the oil spillage near shorline

    NASA Astrophysics Data System (ADS)

    Voicu, I.; Dumitrescu, L. G.; Panaitescu, V. F.; Panaitescu, M.

    2017-08-01

    This paper presents a simulation of an oil spillage near shoreline in real conditions. The purpose of the paper is to determine the evolution of oil spill on sea water surface and in the same time to determine the total costs of depolluting operations organized by the authorities. The simulation is made on the PISCES II Simulator (Potential Incident Simulator Control and Evaluation System) which is designed to handle on real situations such as oil pollutions of the sea. The mathematical model used by the simulator is the dispersion oil-water model, taking account all external conditions such as air/sea water temperature, current/wind speed and direction, sea water density, petroleum physical properties. In the conclusions chapter is presented oil spill details with a financial report for total costs of depolluting operation.

  1. The Undergraduate ALFALFA Team: Collaborative Research Projects

    NASA Astrophysics Data System (ADS)

    Cannon, John M.; Koopmann, Rebecca A.; Haynes, Martha P.; Undergraduate ALFALFA Team, ALFALFA Team

    2016-01-01

    The NSF-sponsored Undergraduate ALFALFA (Arecibo Legacy Fast ALFA) Team (UAT) has allowed faculty and students from a wide range of public and private colleges and especially those with small astronomy programs to learn how science is accomplished in a large collaboration while contributing to the scientific goals of a legacy radio astronomy survey. The UAT has achieved this through close collaboration with ALFALFA PIs to identify research areas accessible to undergraduates. In this talk we will summarize the main research efforts of the UAT, including multiwavelength followup observations of ALFALFA sources, the UAT Collaborative Groups Project, the Survey of HI in Extremely Low-mass Dwarfs (SHIELD), and the Arecibo Pisces-Perseus Supercluster Survey. This work has been supported by NSF grants AST-0724918/0902211, AST-075267/0903394, AST-0725380, and AST-1211005.

  2. Long-term exposure of several marine benthic animals to static magnetic fields.

    PubMed

    Bochert, R; Zettler, M L

    2004-10-01

    Electrical currents in underwater sea cables could induce magnetic fields. The sea cables lie on or within the sea bottom and this is the living area for many invertebrate and vertebrate species. North Sea prawn Crangon crangon (Crustacea, Decapoda), round crab Rhithropanopeus harrisii (Crustacea, Brachyura), glacial relict isopod Saduria entomon (Crustacea, Isopoda), blue mussel Mytilus edulis (Bivalvia), and young flounder Plathichthys flesus (Pisces) were exposed to a static magnetic field (MF) of 3.7 mT for several weeks. The results showed no differences in survival between experimental and control animals. Mussels M. edulis were kept under static magnetic field conditions for 3 months during their reproductive period in spring. The determination of gonad index and condition index revealed no significant differences to the control group. 2004 Wiley-Liss, Inc.

  3. Rapid discovery of SNPs differentiating hatchery steelhead trout from ESA-listed natural-origin steelhead trout using a 57K SNP array

    USGS Publications Warehouse

    Larson, Wesley; Palti, Yniv; Gao, G.; Warheit, Kenneth I.; Seeb, James E.

    2017-01-01

    Natural-origin steelhead trout (Oncorhynchus mykiss (Walbaum, 1792)) in the Pacific Northwest, USA, are threatened by a number of factors including habitat destruction, disease, decline in marine survival, and a potential erosion of genetic viability due to introgression from hatchery strains. Our major goal was to use a recently developed SNP array containing ∼57 000 SNPs to identify a subset of SNPs that differentiate hatchery and natural-origin populations. We analyzed 35 765 polymorphic SNPs in nine populations of steelhead trout sampled from Puget Sound, Washington, USA. We then conducted two outlier tests and found 360 loci that were candidates for divergent selection between hatchery and natural-origin populations (mean FCT = 0.29, maximum = 0.65) and 595 SNPs that were candidates for selection among natural-origin populations (mean FST = 0.25, maximum = 0.51). Comparisons with a linkage map revealed that two chromosomes (Omy05 and Omy25) contained significantly more outliers than other chromosomes, suggesting that regions on Omy05 and Omy25 may be of adaptive significance. Our results highlight several advantages of the 57 000 SNP array as a tool for population and conservation genomics studies.

  4. Persistent effects of wildfire and debris flows on the invertebrate prey base of rainbow trout in Idaho streams

    USGS Publications Warehouse

    Rosenberger, A.E.; Dunham, J.B.; Buffington, J.M.; Wipfli, M.S.

    2011-01-01

    Wildfire and debris flows are important physical and ecological drivers in headwater streams of western North America. Past research has primarily examined short-term effects of these disturbances; less is known about longer-term impacts. We investigated wildfire effects on the invertebrate prey base for drift-feeding rainbow trout (Oncorhynchus mykiss, Walbaum) in Idaho headwater streams a decade after wildfire. Three stream types with different disturbance histories were examined: 1) unburned, 2) burned, and 3) burned followed by debris flows that reset channel morphology and riparian vegetation. The quantity of macroinvertebrate drift (biomass density) was more variable within than among disturbance categories. Average body weight and taxonomic richness of drift were significantly related to water temperature and influenced by disturbance history. During the autumn sampling period, the amount of terrestrial insects in rainbow trout diets varied with disturbance history and the amount of overhead canopy along the stream banks. Results indicate that there are detectable changes to macroinvertebrate drift and trout diet a decade after wildfire, and that these responses are better correlated with specific characteristics of the stream (water temperature, canopy cover) than with broad disturbance classes.

  5. First evidence of infectious hematopoietic necrosis virus (IHNV) in the Netherlands.

    PubMed

    Haenen, O L M; Schuetze, H; Cieslak, M; Oldenburg, S; Spierenburg, M A H; Roozenburg-Hengst, I; Voorbergen-Laarman, M; Engelsma, M Y; Olesen, N J

    2016-08-01

    In spring 2008, infectious hematopoietic necrosis virus (IHNV) was detected for the first time in the Netherlands. The virus was isolated from rainbow trout, Oncorhynchus mykiss (Walbaum), from a put-and-take fishery with angling ponds. IHNV is the causative agent of a serious fish disease, infectious hematopoietic necrosis (IHN). From 2008 to 2011, we diagnosed eight IHNV infections in rainbow trout originating from six put-and-take fisheries (symptomatic and asymptomatic fish), and four IHNV infections from three rainbow trout farms (of which two were co-infected by infectious pancreatic necrosis virus, IPNV), at water temperatures between 5 and 15 °C. At least one farm delivered trout to four of these eight IHNV-positive farms. Mortalities related to IHNV were mostly <40%, but increased to nearly 100% in case of IHNV and IPNV co-infection. Subsequent phylogenetic analysis revealed that these 12 isolates clustered into two different monophyletic groups within the European IHNV genogroup E. One of these two groups indicates a virus-introduction event by a German trout import, whereas the second group indicates that IHNV was already (several years) in the Netherlands before its discovery in 2008. © 2016 John Wiley & Sons Ltd.

  6. Effects of temperature on Renibacterium salmoninarum infection and transmission potential in Chinook salmon, Oncorhynchus tshawytscha (Walbaum)

    USGS Publications Warehouse

    Purcell, Maureen K.; McKibben, Constance L.; Pearman-Gillman, Schuyler; Elliott, Diane G.; Winton, James R.

    2016-01-01

    Renibacterium salmoninarum is a significant pathogen of salmonids and the causative agent of bacterial kidney disease (BKD). Water temperature affects the replication rate of pathogens and the function of the fish immune system to influence the progression of disease. In addition, rapid shifts in temperature may serve as stressors that reduce host resistance. This study evaluated the effect of shifts in water temperature on established R. salmoninarum infections. We challenged Chinook salmon with R. salmoninarum at 12°C for 2 weeks and then divided the fish into three temperature groups (8, 12 and 15°C). Fish in the 8°C group had significantly higher R. salmoninarum-specific mortality, kidney R. salmoninarum loads and bacterial shedding rates relative to the fish held at 12 or 15°C. There was a trend towards suppressed bacterial load and shedding in the 15°C group, but the results were not significant. Bacterial load was a significant predictor of shedding for the 8 and 12°C groups but not for the 15°C group. Overall, our results showed little effect of temperature stress on the progress of infection, but do support the conclusion that cooler water temperatures contribute to infection progression and increased transmission potential in Chinook salmon infected with R. salmoninarum.

  7. Data on sediment quality and concentrations of polychlorinated biphenyls from the Lower Neponset River, Massachusetts, 2002-03

    USGS Publications Warehouse

    Breault, Robert F.; Cooke, Matthew G.; Merrill, Michael

    2004-01-01

    The U.S. Geological Survey, in cooperation with the Massachusetts Executive Office of Environmental Affairs Department of Fish and Game Riverways Program, and the U.S. Environmental Protection Agency, studied sediment and water quality in the lower Neponset River, which is a tributary to Boston Harbor. Grab and core samples of sediment were tested for elements and organic compounds including polyaromatic hydrocarbons, organochlorine pesticides, and polychlorinated biphenyls. Physical properties of sediment samples, including grain size, were also measured. Selected sediment-core samples were tested for reactive sulfides and metals by means of the toxicity characteristic leaching procedure, which are sediment-disposal-related tests. Water quality, with respect to polychlorinated biphenyl contamination, was determined by testing samples collected by PISCES passive-water-column samplers for polychlorinated biphenyl congeners. Total concentrations of polychlorinated biphenyls were calculated by congener and by Aroclor.

  8. Kolmogorov-Kraichnan Scaling in the Inverse Energy Cascade of Two-Dimensional Plasma Turbulence

    NASA Astrophysics Data System (ADS)

    Antar, G. Y.

    2003-08-01

    Turbulence in plasmas that are magnetically confined, such as tokamaks or linear devices, is two dimensional or at least quasi two dimensional due to the strong magnetic field, which leads to extreme elongation of the fluctuations, if any, in the direction parallel to the magnetic field. These plasmas are also compressible fluid flows obeying the compressible Navier-Stokes equations. This Letter presents the first comprehensive scaling of the structure functions of the density and velocity fields up to 10th order in the PISCES linear plasma device and up to 6th order in the Mega-Ampère Spherical Tokamak (MAST). In the two devices, it is found that the scaling of the turbulent fields is in good agreement with the prediction of the Kolmogorov-Kraichnan theory for two-dimensional turbulence in the energy cascade subrange.

  9. Significant Hearing Threshold Shift in USAF Military Personnel: January-June 1975

    DTIC Science & Technology

    1976-02-01

    NAME A ADDRESS(O dIU1troot from Confrollln# Old 5 I. SECURITY CLASS. (at this report) ,, ~ / -- ~UNCLASSIFIED r/ V7 5 L. 0 -f6-. OE:CLAS$)PICATIOP4/~ow... 5 of N oa AFS Jo7il oa WSS ySS w/T 12~ Nio-i e 58t136 8a1405 .8 09 Milc pisc instructor 1,17 0.742 0 1472.00 2.13 14 pilot-operations 1,056 2.46 346...121 5 41 27 5 77 3 1 03 5 1 45 21 5 78 2 1 04 2 1 48 3 1 79 10 4 105 3 2 so 1 0 82 7 4 06 2 1 52 1i 1 83 6 1 I08 3 0 59 17 11 84 4 1. 19 3 1. 61 13 485

  10. Electrofishing effort required to estimate biotic condition in southern Idaho Rivers

    USGS Publications Warehouse

    Maret, Terry R.; Ott, Douglas S.; Herlihy, Alan T.

    2007-01-01

    An important issue surrounding biomonitoring in large rivers is the minimum sampling effort required to collect an adequate number of fish for accurate and precise determinations of biotic condition. During the summer of 2002, we sampled 15 randomly selected large-river sites in southern Idaho to evaluate the effects of sampling effort on an index of biotic integrity (IBI). Boat electrofishing was used to collect sample populations of fish in river reaches representing 40 and 100 times the mean channel width (MCW; wetted channel) at base flow. Minimum sampling effort was assessed by comparing the relation between reach length sampled and change in IBI score. Thirty-two species of fish in the families Catostomidae, Centrarchidae, Cottidae, Cyprinidae, Ictaluridae, Percidae, and Salmonidae were collected. Of these, 12 alien species were collected at 80% (12 of 15) of the sample sites; alien species represented about 38% of all species (N = 32) collected during the study. A total of 60% (9 of 15) of the sample sites had poor IBI scores. A minimum reach length of about 36 times MCW was determined to be sufficient for collecting an adequate number of fish for estimating biotic condition based on an IBI score. For most sites, this equates to collecting 275 fish at a site. Results may be applicable to other semiarid, fifth-order through seventh-order rivers sampled during summer low-flow conditions.

  11. Comparative analysis reveals that polyploidy does not decelerate diversification in fish.

    PubMed

    Zhan, S H; Glick, L; Tsigenopoulos, C S; Otto, S P; Mayrose, I

    2014-02-01

    While the proliferation of the species-rich teleost fish has been ascribed to an ancient genome duplication event at the base of this group, the broader impact of polyploidy on fish evolution and diversification remains poorly understood. Here, we investigate the association between polyploidy and diversification in several fish lineages: the sturgeons (Acipenseridae: Acipenseriformes), the botiid loaches (Botiidae: Cypriniformes), Cyprininae fishes (Cyprinidae: Cypriniformes) and the salmonids (Salmonidae: Salmoniformes). Using likelihood-based evolutionary methodologies, we co-estimate speciation and extinction rates associated with polyploid vs. diploid fish lineages. Family-level analysis of Acipenseridae and Botiidae revealed no significant difference in diversification rates between polyploid and diploid relatives, while analysis of the subfamily Cyprininae revealed higher polyploid diversification. Additionally, order-level analysis of the polyploid Salmoniformes and its diploid sister clade, the Esociformes, did not support a significantly different net diversification rate between the two groups. Taken together, our results suggest that polyploidy is generally not associated with decreased diversification in fish - a pattern that stands in contrast to that previously observed in plants. While there are notable differences in the time frame examined in the two studies, our results suggest that polyploidy is associated with different diversification patterns in these two major branches of the eukaryote tree of life. © 2014 The Authors. Journal of Evolutionary Biology © 2014 European Society For Evolutionary Biology.

  12. STT Doubles with Large Delta M - Part VII: Andromeda, Pisces, Auriga

    NASA Astrophysics Data System (ADS)

    Knapp, Wilfried; Nanson, John

    2017-01-01

    The results of visual double star observing sessions suggested a pattern for STT doubles with large DM of being harder to resolve than would be expected based on the WDS catalog data. It was felt this might be a problem with expectations on one hand, and on the other might be an indication of a need for new precise measurements, so we decided to take a closer look at a selected sample of STT doubles and do some research. Similar to the other objects covered so far several of the components show parameters quite different from the current WDS data.

  13. Slingshot feeding of the goblin shark Mitsukurina owstoni (Pisces: Lamniformes: Mitsukurinidae)

    PubMed Central

    Nakaya, Kazuhiro; Tomita, Taketeru; Suda, Kenta; Sato, Keiichi; Ogimoto, Keisuke; Chappell, Anthony; Sato, Toshihiko; Takano, Katsuhiko; Yuki, Yoshio

    2016-01-01

    Five striking and prey capture events of two goblin sharks were videotaped at sea for the first time, showing their extraordinary biting process. The goblin sharks swung their lower jaw downward and backward to attain a huge gape and then rapidly protruded the jaws forward a considerable distance. The jaws were projected at a maximum velocity of 3.1 m/s to 8.6–9.4% of the total length of the shark, which is by far the fastest and greatest jaw protrusion among sharks. While the jaws were being retracted, the mouth opened and closed again, which was considered a novel feeding event for sharks. Phylogenetic evidence suggested that their feeding behavior has evolved as an adaptation to food-poor deep-sea environments, possibly as a trade-off for the loss of strong swimming ability. PMID:27282933

  14. Nematode larvae infecting Priacanthus arenatus Cuvier, 1829 (Pisces: Teleostei) in Brazil.

    PubMed

    Kuraiem, Bianca P; Knoff, Marcelo; Felizardo, Nilza N; Gomes, Delir C; Clemente, Sérgio C São

    2016-05-31

    From July to December, 2013, thirty Priacanthus arenatus specimens commercialized in the cities of Niterói and Rio de Janeiro, State of Rio de Janeiro, were acquired. The fish were necropsied and filleted to investigate the presence of nematode larvae. Twenty fish (66.7%) out of the total were parasitized by nematode larvae. A total of 2024 larvae were collected; among them, 30 third-instar larvae of Anisakis sp. showed prevalence (P) = 20%, mean abundance (MA) = 1, and the mean intensity (MI) = 5, and infection sites (IS) = caecum, stomach, liver, and mesentery; and 1,994 third-instar larvae (1,757 encysted and 237 free) of Hysterothylacium deardorffoverstreetorum with P = 66.7%, MA = 66.5, and MI = 99.7, and IS = spleen, caecum, stomach, liver, mesentery, and abdominal muscle. This is the first study to report H. deardorffoverstreetorum and Anisakis sp. larvae parasitizing P. arenatus.

  15. PISCES The Commander’s Tool for an Effective Exit Strategy

    DTIC Science & Technology

    2003-05-16

    per response, including the time for reviewing instructions, searching existing data sources, gathering and maintaining the data needed, and completing...and reviewing this collection of information. Send comments regarding this burden estimate or any other aspect of this collection of information...international “police-like” capability, including training in SWAT tactics and non-lethal weapons. This force would specialize in Preventive Intervention

  16. Chromosomal distribution of microsatellite repeats in Amazon cichlids genome (Pisces, Cichlidae)

    PubMed Central

    Schneider, Carlos Henrique; Gross, Maria Claudia; Terencio, Maria Leandra; de Tavares, Édika Sabrina Girão Mitozo; Martins, Cesar; Feldberg, Eliana

    2015-01-01

    Abstract Fish of the family Cichlidae are recognized as an excellent model for evolutionary studies because of their morphological and behavioral adaptations to a wide diversity of explored ecological niches. In addition, the family has a dynamic genome with variable structure, composition and karyotype organization. Microsatellites represent the most dynamic genomic component and a better understanding of their organization may help clarify the role of repetitive DNA elements in the mechanisms of chromosomal evolution. Thus, in this study, microsatellite sequences were mapped in the chromosomes of Cichla monoculus Agassiz, 1831, Pterophyllum scalare Schultze, 1823, and Symphysodon discus Heckel, 1840. Four microsatellites demonstrated positive results in the genome of Cichla monoculus and Symphysodon discus, and five demonstrated positive results in the genome of Pterophyllum scalare. In most cases, the microsatellite was dispersed in the chromosome with conspicuous markings in the centromeric or telomeric regions, which suggests that sequences contribute to chromosome structure and may have played a role in the evolution of this fish family. The comparative genome mapping data presented here provide novel information on the structure and organization of the repetitive DNA region of the cichlid genome and contribute to a better understanding of this fish family’s genome. PMID:26753076

  17. Insecticides biomarker responses on a freshwater fish Corydoras paleatus (Pisces: Callichthyidae).

    PubMed

    Guiloski, Izonete Cristina; Rossi, Stéfani Cibele; da Silva, Cesar Aparecido; de Assis, Helena Cristina Silva

    2013-01-01

    This study was undertaken to investigate the effects of sublethal concentration of three different classes of insecticides (carbamate, organophosphate, and pyrethroid compounds) on the freshwater fish Corydoras paleatus. For this purpose, fish were exposed for 96 hours to commercial pesticides. Different biomarkers were analyzed as levels of lipid peroxidation (LPO), piscine micronucleus test, and enzymatic activities of catalase (CAT), glutathione S-transferase (GST), and acetylcholinesterase (AChE). The brain AChE was inhibited with carbaryl and methyl parathion, but no inhibition was observed with deltamethrin. The insecticides did not cause oxidative stress or genotoxic effects at the tested concentrations. Further studies are needed to elucidate the biotransformation of Corydoras paleatus insecticides and a possible resistance mechanism.

  18. Blood cell lineage in the sea lamprey, Petromyzon marinus (Pisces: Petromyzontidae)

    USGS Publications Warehouse

    Piavis, George W.; Hiatt, James L.

    1971-01-01

    Blood cell types of the sea lamprey, Petromyzon marinus, are described and identified and the lineage of mature circulating cells in peripheral blood is traced to blast cells in the hematopoietic fat body. The fat body appears to be the phylogenetic precursor of bone marrow in higher forms, since blood cells originate and begin maturation in this tissue. Experimental animals were injected first with a hematopoietic stimulant and then (at an experimentally determined time) with pertussis vaccine to release proliferated blood cells into peripheral blood. Peripheral blood for smears was collected by cardiac exsanguination; hematopoietic tissue was extirpated for imprints; and leucocyte preparations were made by a special technique. Blood cells of the sea lamprey are apparently products of at least four distinct blast cells, each of which has a 'one end' maturation process. Results of this investigation support the polyphyletic theory of blood cell formation.

  19. Instrument Construction and Initial Validation: Professional Identity Scale in Counseling (PISC)

    ERIC Educational Resources Information Center

    Woo, Hong Ryun

    2013-01-01

    The advantages of having a strong professional identity include ethical performances, promoted wellness, and increased awareness of roles and functions among individual counselors (Brott & Myers, 1999; Grimmit & Paisley, 2008; Ponton & Duba, 2009). Scholars in the counseling field have underscored the importance of unified professional…

  20. Commissioning and performance results of the WFIRST/PISCES integral field spectrograph

    NASA Astrophysics Data System (ADS)

    Saxena, Prabal; Rizzo, Maxime J.; Mejia Prada, Camilo; Llop Sayson, Jorge; Gong, Qian; Cady, Eric J.; Mandell, Avi M.; Groff, Tyler D.; McElwain, Michael W.

    2017-09-01

    Direct imaging of exoplanets has become a priority in the field of exoplanet discovery and characterization due to its ability to directly obtain evidence about a planet's atmosphere and some bulk properties. Features such as atmospheric composition, structure and clouds are just some of the planetary properties obtainable from directly imaged spectra. However, detecting and observing spectra of exoplanets using direct imaging is challenging due to the combination of extreme star to planet contrast ratios and the relatively small apparent physical separation between a host star and an orbiting planet. Detection of Earth-sized planets in reflected visible light requires contrast ratios of 1010, while even detection of Jupiter-sized planets and large young self-luminous planets requires contrast ratios of 108 and 106, respectively. Consequently, direct detection of exoplanets requires observing strategies which push the boundaries of high contrast imaging. The use of coronagraphy to occult a host star has been combined with adaptive optics (AO) technology to yield a particularly promising means of potentially achieving the required contrast ratios in regions close-in enough to the host star. Ground based adaptive optics systems such as The Gemini Planet Imager (GPI)1 and Spectro-Polarimetric High-contrast Exoplanet REsearch (SPHERE)2 instrument have been able to achieve contrast ratios nearing 107 using post-processing techniques3, 4 and have yielded a number of direct detections of young self-luminous planets. Advancing these technologies onto a space based platform immune to the difficulties posed by the effects of Earth's atmosphere is the next step in accessing even larger contrast ratios.

  1. THE CELLULAR STRUCTURE OF LYMPHOMYELOID TISSUES IN CHIMAERA MONSTROSA (PISCES, HOLOCEPHALI).

    PubMed

    Mattisson, Artur; Fänge, Ragnar

    1986-12-01

    The ultrastructure of the main lymphomyeloid organs of the holocephalan fish, Chimaera monstrosa, is presented. The thymus is well developed even in adults. It is densely packed with small and large lymphocytes, the former predominating. The ultrastructure of C. monstrosa's lymphocytes is similar to that of mammalian ones. The lymphocytes show intimate connections with large epithelial reticulocytes, which infiltrate the cytoplasm of the lymphocytes with long processes. The lymphomyeloid tissues around the orbit are mainly granulocytopoietic. Two types of granulocytes occur: eosinophilic and heterophilic. The latter is found in excess. The granulocytes are ultrastructurally similar to those of elasmobranchs such as Etmopterus spinax and have similar characteristic granules. In addition to granulocytes in various stages, lymphocytes, plasma cells, blast cells, and solitary macrophages are scattered throughout the tissue. The suprapalatal region also has a similar supply and variety of cells, but most heterophilic granulocytes have modified granules. In the spleen, erythrocytes in different developmental stages are common. This confirms earlier studies which suggested that the spleen functions primarily as an erythrocytopoietic organ.

  2. Shillapoo Wildlife Area, Annual Report 2007-2008.

    DOE Office of Scientific and Technical Information (OSTI.GOV)

    Calkins, Brian

    This report summarizes accomplishments, challenges and successes on WDFW's Shillapoo Wildlife Area funded under Bonneville Power Administration's (BPA) Wildlife Mitigation Program (BPA project No.2003-012-00) during the Fiscal Year 08 contract period October 1, 2007-September 30, 2008. The information presented here is intended to supplement that contained in BPA's PISCES contract development and reporting system. The organization below is by broad categories of work but references are made to individual work elements in the PISCES Statement of Work as appropriate. Significant progress was realized in almost all major work types. Of particular note was progress made in tree plantings and pasturemore » rehabilitation efforts. This year's tree planting effort included five sites detailed below and in terms of the number of plants was certainly the largest effort on the wildlife area to date in one season. The planting itself took a significant amount of time, which was anticipated. However, installation of mats and tubes took much longer than expected which impacted planned fence projects in particular. Survival of the plantings appears to be good. Improvement to the quality of waterfowl pasture habitats is evident on a number of sites due to replanting and weed control efforts. Continuing long-term weed control efforts will be key in improving this particular type of habitat. A prolonged cold, wet spring and a number of equipment breakdowns presented stumbling blocks that impacted schedules and ultimately progress on planned activities. The unusual spring weather delayed fieldwork on pasture planting projects as well as weed control and slowed the process of maintaining trees and shrubs. This time lag also caused the continued deferral of some of our fencing projects. The large brush hog mower had the driveline break twice and the smaller tractor had an engine failure that caused it to be down for over a month. We have modified our budget plan for next year to

  3. First imaging results from Apertif, a phased-array feed for WSRT

    NASA Astrophysics Data System (ADS)

    Adams, Elizabeth A.; Adebahr, Björn; de Blok, Willem J. G.; Hess, Kelley M.; Hut, Boudewijn; Lucero, Danielle M.; Maccagni, Filippo; Morganti, Raffaella; Oosterloo, Tom; Staveley-Smith, Lister; van der Hulst, Thijs; Verheijen, Marc; Verstappen, Joris

    2017-01-01

    Apertif is a phased-array feed for the Westerbork Synthesis Radio Telescope (WSRT), increasing the field of view of the telescope by a factor of twenty-five. In 2017, three legacy surveys will commence: a shallow imaging survey, a medium-deep imaging survey, and a pulsars and fast transients survey. The medium-deep imaging survey will include coverage of the northern Herschel Atlas field, the CVn region, HetDex, and the Perseus-Pisces supercluster. The shallow imaging survey increases overlap with HetDex, has expanded coverage of the Perseus-Pisces supercluster, and includes part of the Zone of Avoidance. Both imaging surveys are coordinating with MaNGA and will have WEAVE follow-up. The imaging surveys will be done in full polarization over the frequency range 1130-1430 MHz, which corresponds to redshifts of z=0-0.256 for neutral hydrogen (HI). The spectral resolution is 12.2 kHz, or an HI velocity resolution of 2.6 km/s at z=0 and 3.2 km/s at z=0.256. The full resolution images will have a beam size of 15"x15"/sin(declination), and tapered data products (i.e., 30" resolution images) will also be available. The shallow survey will cover ~3500 square degrees with a four-sigma HI imaging sensitivity of 2.5x10^20 atoms cm^-2 (20 km/s linewidth) at the highest resolution and a continuum sensitivity of 15 uJy/beam (11 uJy/beam for polarization data). The current plan calls for the medium deep survey to cover 450 square degrees and provide an HI imaging sensitivity of 1.0x10^20 atoms cm^-2 at the highest resolution and a continuum sensitivity of 6 uJy/beam, close to the confusion limit (4 uJy/beam for polarization data, not confusion limited). Up-to-date information on Apertif and the planned surveys can be found at: http://www.apertif.nl.Commissioning of the Apertif instrument is currently underway. Here we present first results from the image commissioning, including the detection of HI absorption plus continuum and HI imaging. These results highlight the data quality

  4. The influence of the merger history of dwarf galaxies in a reionized universe

    NASA Astrophysics Data System (ADS)

    Verbeke, Robbert; Vandenbroucke, Bert; De Rijcke, Sven; Koleva, Mina

    2015-08-01

    In the ΛCDM model, cosmic structure forms in a hierarchical fashion. According to this paradigm, even low-mass dwarf galaxies grow via smooth accretion and mergers. Given the low masses of dwarf galaxies and their even smaller progenitors, the UV background is expected to have a significant influence on their gas content and, consequently, their star formation histories. Generally, cosmological simulations predict that most dwarf systems with circular velocities below ~30 km/s should not be able to form significant amounts of stars or contain gas and be, in effect, "dark" galaxies (Sawala et al. 2013, 2014; Hopkins et al. 2014; Shen et al. 2014). This is in contradiction with the recent discovery of low-mass yet gas-rich dwarf galaxies, such as Leo P (Skillman et al. 2013), Pisces A (Tollerud et al. 2014), and SECCO 1 (Bellazzini et al. 2015). Moreover, Tollerud et al. (2014) point out that most isolated dark-matter halos down to circular velocities of ~15 km/s contain neutral gas, in contradiction with the predictions of current simulations.Based on a suite of simulations of the formation and evolution of dwarf galaxies we show that, by reducing the first peak of star formation by including Pop-III stars in the simulations, the resulting dwarf galaxies have severely suppressed SFRs and can hold on to their gas reservoirs. Moreover, we show that the majority of the zero-metallicity stars are ejected during mergers, resulting in an extended, low-metallicity stellar halo. This results in a marked difference between a galaxy's "total" star-formation history and the one read from the stars in the center of the galaxy at z=0. This mechanism leads to the formation of realistic low-mass, gas-rich dwarfs with a broad range of SFHs and which adhere to the observed scaling relations, such as the baryonic Tully-Fisher relation.In short, the simulations presented here are for the first time able to reproduce the observed properties of low-mass, gas-rich dwarfs such as DDO 210

  5. Evaluation of angler reporting accuracy in an off-site survey to estimate statewide steelhead harvest

    USGS Publications Warehouse

    McCormick, J. L.; Whitney, D.; Schill, D. J.; Quist, Michael C.

    2015-01-01

    Accuracy of angler-reported data on steelhead, Oncorhynchus mykiss (Walbaum), harvest in Idaho, USA, was quantified by comparing data recorded on angler harvest permits to the numbers that the same group of anglers reported in an off-site survey. Anglers could respond to the off-site survey using mail or Internet; if they did not respond using these methods, they were called on the telephone. A majority of anglers responded through the mail, and the probability of responding by Internet decreased with increasing age of the respondent. The actual number of steelhead harvested did not appear to influence the response type. Anglers in the autumn 2012 survey overreported harvest by 24%, whereas anglers in the spring 2013 survey under-reported steelhead harvest by 16%. The direction of reporting bias may have been a function of actual harvest, where anglers harvested on average 2.6 times more fish during the spring fishery than the autumn. Reporting bias that is a function of actual harvest can have substantial management and conservation implications because the fishery will be perceived to be performing better at lower harvest rates and worse when harvest rates are higher. Thus, these findings warrant consideration when designing surveys and evaluating management actions.

  6. Pumpkin seed cake as a fishmeal substitute in fish nutrition: effects on growth performance, morphological traits and fillet colour of two freshwater salmonids and two catfish species.

    PubMed

    Greiling, Alexander Michael; Schwarz, Christiane; Gierus, Martin; Rodehutscord, Markus

    2018-06-01

    The objectives of this study were to investigate the digestibility of pumpkin seed cake (PSC) for the rainbow trout, Oncorhynchus mykiss (Walbaum, 1792), and effects on performance and product quality traits of four different fish species when PSC partially replaced fishmeal in extruded diets. A digestibility trial was carried out to determine apparent digestibility coefficients (ADC) for crude protein (CP), ether extract (EE) and gross energy (GE) of PSC fed to rainbow trout. In subsequent growth trials, effects on performance and morphological traits and fillet colour values of four different fish species [rainbow trout; brook trout, Salvelinus fontinalis (Mitchill, 1814); African sharptooth catfish, Clarias gariepinus (Burchell, 1822); and wels catfish, Silurus glanis (Linnaeus, 1758)] were evaluated when 60% of fishmeal protein of a reference diet was replaced by PSC protein (based on digestible CP). Nutrient ADC of PSC were high (CP: 89%, EE: 88% and GE: 84%). No significant effects on growth and only minor effects on fillet colour were detected in the trials. However, replacing fishmeal with PSC at the chosen level affected morphological traits and feed conversion in all four species to different extents. Replacement effects of PSC should be tested at lower levels of inclusion before conclusions are drawn on its suitability in fish diets.

  7. Variation in wind and piscivorous predator fields affecting the survival of Atlantic salmon, Salmo salar, in the Gulf of Maine

    USGS Publications Warehouse

    Friedland, K.D.; Manning, J.P.; Link, Jason S.; Gilbert, J.R.; Gilbert, A.T.; O'Connell, A.F.

    2012-01-01

    Observations relevant to the North American stock complex of Atlantic salmon, Salmo salar L., suggest that marine mortality is influenced by variation in predation pressure affecting post-smolts during the first months at sea. This hypothesis was tested for Gulf of Maine (GOM) stocks by examining wind pseudostress and the distribution of piscivorous predator fields potentially affecting post-smolts. Marine survival has declined over recent decades with a change in the direction of spring winds, which is likely extending the migration of post-smolts by favouring routes using the western GOM. In addition to changes in spring wind patterns, higher spring sea surface temperatures have been associated with shifting distributions of a range of fish species. The abundance of several pelagic piscivores, which based on their feeding habits may predate on salmon post-smolts, has increased in the areas that serve as migration corridors for post-smolts. In particular, populations of silver hake, Merluccius bilinearis (Mitchell), red hake, Urophycis chuss (Walbaum), and spiny dogfish, Squalus acanthias L., increased in size in the portion of the GOM used by post-smolts. Climate variation and shifting predator distributions in the GOM are consistent with the predator hypothesis of recruitment control suggested for the stock complex.

  8. Comparative molecular analysis of evolutionarily distant glyceraldehyde-3-phosphate dehydrogenase from Sardina pilchardus and Octopus vulgaris.

    PubMed

    Baibai, Tarik; Oukhattar, Laila; Mountassif, Driss; Assobhei, Omar; Serrano, Aurelio; Soukri, Abdelaziz

    2010-12-01

    The NAD(+)-dependent cytosolic glyceraldehyde-3-phosphate dehydrogenase (GAPDH, EC 1.2.1.12), which is recognized as a key to central carbon metabolism in glycolysis and gluconeogenesis and as an important allozymic polymorphic biomarker, was purified from muscles of two marine species: the skeletal muscle of Sardina pilchardus Walbaum (Teleost, Clupeida) and the incompressible arm muscle of Octopus vulgaris (Mollusca, Cephalopoda). Comparative biochemical studies have revealed that they differ in their subunit molecular masses and in pI values. Partial cDNA sequences corresponding to an internal region of the GapC genes from Sardina and Octopus were obtained by polymerase chain reaction using degenerate primers designed from highly conserved protein motifs. Alignments of the deduced amino acid sequences were used to establish the 3D structures of the active site of two enzymes as well as the phylogenetic relationships of the sardine and octopus enzymes. These two enzymes are the first two GAPDHs characterized so far from teleost fish and cephalopod, respectively. Interestingly, phylogenetic analyses indicated that the sardina GAPDH is in a cluster with the archetypical enzymes from other vertebrates, while the octopus GAPDH comes together with other molluscan sequences in a distant basal assembly closer to bacterial and fungal orthologs, thus suggesting their different evolutionary scenarios.

  9. Bench-top validation testing of selected immunological and molecular Renibacterium salmoninarum diagnostic assays by comparison with quantitative bacteriological culture

    USGS Publications Warehouse

    Elliott, D.G.; Applegate, L.J.; Murray, A.L.; Purcell, M.K.; McKibben, C.L.

    2013-01-01

    No gold standard assay exhibiting error-free classification of results has been identified for detection of Renibacterium salmoninarum, the causative agent of salmonid bacterial kidney disease. Validation of diagnostic assays for R. salmoninarum has been hindered by its unique characteristics and biology, and difficulties in locating suitable populations of reference test animals. Infection status of fish in test populations is often unknown, and it is commonly assumed that the assay yielding the most positive results has the highest diagnostic accuracy, without consideration of misclassification of results. In this research, quantification of R. salmoninarum in samples by bacteriological culture provided a standardized measure of viable bacteria to evaluate analytical performance characteristics (sensitivity, specificity and repeatability) of non-culture assays in three matrices (phosphate-buffered saline, ovarian fluid and kidney tissue). Non-culture assays included polyclonal enzyme-linked immunosorbent assay (ELISA), direct smear fluorescent antibody technique (FAT), membrane-filtration FAT, nested polymerase chain reaction (nested PCR) and three real-time quantitative PCR assays. Injection challenge of specific pathogen-free Chinook salmon, Oncorhynchus tshawytscha (Walbaum), with R. salmoninarum was used to estimate diagnostic sensitivity and specificity. Results did not identify a single assay demonstrating the highest analytical and diagnostic performance characteristics, but revealed strengths and weaknesses of each test.

  10. A real-time PCR approach to detect predation on anchovy and sardine early life stages

    NASA Astrophysics Data System (ADS)

    Cuende, Elsa; Mendibil, Iñaki; Bachiller, Eneko; Álvarez, Paula; Cotano, Unai; Rodriguez-Ezpeleta, Naiara

    2017-12-01

    Recruitment of sardine (Sardina pilchardus Walbaum, 1792) and anchovy (Engraulis encrasicolus Linnaeus, 1758) is thought to be regulated by predation of their eggs and larvae. Predators of sardine and anchovy can be identified by visual taxonomic identification of stomach contents, but this method is time consuming, tedious and may underestimate predation, especially in small predators such as fish larvae. Alternatively, genetic tools may offer a more cost-effective and accurate alternative. Here, we have developed a multiplex real-time polymerase chain reaction (RT-PCR) assay based on TaqMan probes to simultaneously detect sardine and anchovy remains in gut contents of potential predators. The assay combines previously described and newly generated species-specific primers and probes for anchovy and sardine detection respectively, and allows the detection of 0,001 ng of target DNA (which corresponds to about one hundredth of the total DNA present in a single egg). We applied the method to candidate anchovy and sardine egg predators in the Bay of Biscay, Atlantic Mackerel (Scomber scombrus) larvae. Egg predation observed was limited primarily to those stations where sardine and/or anchovy eggs were present. Our developed assay offers a suitable tool to understand the effects of predation on the survival of anchovy and sardine early life stages.

  11. Effects of ascorbic acid enrichment by immersion of rainbow trout (Oncorhynchus mykiss, Walbaum 1792) eggs and embryos

    USGS Publications Warehouse

    Falahatkar, B.; Dabrowski, K.; Arslan, M.; Rinchard, J.

    2006-01-01

    This study was conducted to examine the effects of different forms and concentrations of ascorbic acid (vitamin C), and different enrichment times (24 and 48 h post ovulation) on egg, embryo and alevin ascorbate concentrations and survival of rainbow trout (enrichment was at the ova stage). In experiments 1 and 2, fertilized eggs were immersed in water containing ascorbate at 0 (control), 100, 1000 mg L-1 l-ascorbic acid (AA) and 2000 mg L -1 l-ascorbyl monophosphate (AP). In experiment 3, 0 (control), 500 and 1000 mg L-1 AA neutralized (N) with NaOH, 1000 mg L-1 AA non-neutralized (NN), 1000 and 2000 mg L-1 AP immersions were used. The mean total ascorbic acid (TAA) and dehydroascorbic acid (DHA) concentrations were measured before fertilization, at 3 and 24 h after fertilization, at the eyed stage, and in hatched alevins. We observed significant differences in TAA concentration at different immersion levels at 3 and 24 h after fertilization. Survival decreased significantly depending on the level of vitamin C, pH of the solutions and immersion time. We suggest that when broodstock rainbow trout do not have enough vitamin C in their ovaries, immersion of eggs in 1000 mg L-1 of neutralized AA may be useful. ?? 2006 Blackwell Publishing Ltd.

  12. Effects of temperature on disease progression and swimming stamina in Ichthyophonus-infected rainbow trout, Oncorhynchus mykiss (Walbaum).

    PubMed

    Kocan, R; Hershberger, P; Sanders, G; Winton, J

    2009-10-01

    Rainbow trout, Oncorhynchus mykiss, were infected with Ichthyophonus sp. and held at 10 degrees C, 15 degrees C and 20 degrees C for 28 days to monitor mortality and disease progression. Infected fish demonstrated more rapid onset of disease, higher parasite load, more severe host tissue reaction and reduced mean-day-to-death at higher temperature. In a second experiment, Ichthyophonus-infected fish were reared at 15 degrees C for 16 weeks then subjected to forced swimming at 10 degrees C, 15 degrees C and 20 degrees C. Stamina improved significantly with increased temperature in uninfected fish; however, this was not observed for infected fish. The difference in performance between infected and uninfected fish became significant at 15 degrees C (P = 0.02) and highly significant at 20 degrees C (P = 0.005). These results have implications for changes in the ecology of fish diseases in the face of global warming and demonstrate the effects of higher temperature on the progression and severity of ichthyophoniasis as well as on swimming stamina, a critical fitness trait of salmonids. This study helps explain field observations showing the recent emergence of clinical ichthyophoniasis in Yukon River Chinook salmon later in their spawning migration when water temperatures were high, as well as the apparent failure of a substantial percentage of infected fish to successfully reach their natal spawning areas.

  13. Effect of modified atmosphere packaging on the shelf life of rainbow trout (Oncorhynchus mykiss, Walbaum 1792) mince.

    PubMed

    Kocatepe, Demet; Turan, Hülya; Altan, Can Okan; Keskin, Irfan; Ceylan, Asuman

    2016-06-01

    This paper reports the effect of different concentrations of CO2/N2 gases on chemical/sensorial stability, color properties (L*, a*, and b* values), and microbiological properties of trout mince stored at 3 ± 1℃. The gas mixtures were used as follows; 60%CO2 + 40%N2 (B), 75%CO2 + 25%N2 (C), 40%CO2 + 60%N2 (D). Control samples (A) were packed under atmospheric air. Analyses were carried out on the 1st, 4th, 8th, 12th, 16th, 20th, 24th and 28th days of storage. Among three modified atmosphere gas compositions, the best preservation method and most suitable gas concentration for trout mince were found in group C including 75% CO2 The inconsumable day of trout mince packed with air (control) and MAPs (Modified Atmosphere Packaging) (group B, C, and D) were 12th, 16th, 24th, and 16th days, respectively. © The Author(s) 2015.

  14. Effects of temperature on disease progression and swimming stamina in Ichthyophonus-infected rainbow trout, Oncorhynchus mykiss (Walbaum)

    USGS Publications Warehouse

    Kocan, R.; Hershberger, P.; Sanders, G.; Winton, J.

    2009-01-01

    Rainbow trout, Oncorhynchus mykiss, were infected with Ichthyophonus sp. and held at 10 ??C, 15 ??C and 20 ??C for 28 days to monitor mortality and disease progression. Infected fish demonstrated more rapid onset of disease, higher parasite load, more severe host tissue reaction and reduced mean-day-to-death at higher temperature. In a second experiment, Ichthyophonus-infected fish were reared at 15 ??C for 16 weeks then subjected to forced swimming at 10 ??C, 15 ??C and 20 ??C. Stamina improved significantly with increased temperature in uninfected fish; however, this was not observed for infected fish. The difference in performance between infected and uninfected fish became significant at 15 ??C (P = 0.02) and highly significant at 20 ??C (P = 0.005). These results have implications for changes in the ecology of fish diseases in the face of global warming and demonstrate the effects of higher temperature on the progression and severity of ichthyophoniasis as well as on swimming stamina, a critical fitness trait of salmonids. This study helps explain field observations showing the recent emergence of clinical ichthyophoniasis in Yukon River Chinook salmon later in their spawning migration when water temperatures were high, as well as the apparent failure of a substantial percentage of infected fish to successfully reach their natal spawning areas. ?? 2009 Blackwell Publishing Ltd.

  15. IRAS galaxies versus POTENT mass - Density fields, biasing, and Omega

    NASA Technical Reports Server (NTRS)

    Dekel, Avishai; Bertschinger, Edmund; Yahil, Amos; Strauss, Michael A.; Davis, Marc; Huchra, John P.

    1993-01-01

    A comparison of the galaxy density field extracted from a complete redshift survey of IRAS galaxies brighter than 1.936 Jy with the mass-density field reconstructed by the POTENT procedure from the observed peculiar velocities of 493 objects is presented. A strong correlation is found between the galaxy and mass-density fields; both feature the Great Attractor, part of the Perseus-Pisces supercluster, and the large void between them. Monte Carlo noise simulations show that the data are consistent with the hypotheses that the smoothed fluctuations of galaxy and mass densities at each point are proportional to each other with the 'biasing' factor of IRAS galaxies, b(I), and that the peculiar velocity field is related to the mass-density field as expected according to the gravitational instability theory. Under these hypotheses, the two density fields can be related by specifying b(I) and the cosmological density parameter, Omega.

  16. The structure of the nearby universe traced by theIRAS galaxies

    NASA Technical Reports Server (NTRS)

    Yahil, Amos

    1993-01-01

    One of the most important discoveries of the Infrared Astronomical Satellite (IRAS) has been the detection of about 20,000 galaxies with 60 microns fluxes above 0.5 Jy. From the observational point of view, the IRAS galaxies are ideal tracers of density, since they are homogeneously detected over most of the sky, and their fluxes are unaffected by galactic extinction. The nearby universe was mapped by the IRAS galaxies to a distance of approximately 200 h(exp -1) Mpc for the absolute value of b less than 5 deg. The ability to map down to such low galactic latitudes has proven to be particularly imporant, since some of the most important nearby large-scale structures, such as the Great Attractor, the Perseus-Pisces region, and the Shapley concentration, all lie there. Two major results of the U.S. IRAS redshift survey are discussed.

  17. [Reproduction of the fish Brotula clarkae (Pisces: Ophidiidae) in the Colombian Pacific].

    PubMed

    Acevedo, Jenny; Angulo, Wilberto; Ramírez, Manuel; Zapata, Luis A

    2007-01-01

    We studied the reproductive ecology of the fish Brotula clarkae based on 754 individuals obtained from the industrial and artisanal fisheries in the Colombian Pacific (March 1994 to December 1996). Histological sections (paraplast embedding and Harris's hematoxylin-eosin stain) were made from 151 females (26-100 cm total length). Additionally, mean diameter and particular features are described for oocyte phases and ovarian development stages. The mean size at initial sexual maturity of females was determined with two methods (graphic and statistic) in 61.3 cm and 62.3 cm respectively. The general sex ratio was 1:1. There are several spawn pulses between May and October. The mean fecundity by spawn pulse was 1,005,657 eggs. We recommend a fishing ban during the reproduction period and a minimal catch size above 62.3 cm.

  18. Restricted movement by mottled sculpin (Pisces: Cottidae) in a southern Appalachian stream.

    Treesearch

    J. Todd Petty; Gary D. Grossman

    2004-01-01

    1. We used direct observation and mark-recapture techniques to quantify movements by mottled sculpins (Cottus bairdi) in a 1 km segment of Shope Fork in western North Carolina. Our objectives were to: (i) quantify the overall rate of sculpin movement, (ii) assess variation in movement among years, individuals, and sculpin size classes, (iii) relate movement to...

  19. Observations on the reproductive and larval biology of Blennius pavo (Pisces: Teleostei)

    NASA Astrophysics Data System (ADS)

    Westernhagen, H.

    1983-09-01

    Social behaviour and spawning of adult Blennius pavo kept in the laboratory are described. Eggs are deposited in batches on the walls of artificial spawning places (PVC pipes). One male guards and tends the eggs of different females in one spawning place. Larval hatching occurs in groups according to oviposition. Minimum incubation temperature is around 14 15°C. Larval survival in 1-1 rearing jars is not related to larval total length but to density of larval stock. An experimental population of laboratory reared juvenile and adolescent B. pavo displays a male to female ratio of 1:1.4. Factors possibly influencing the sex ratio of this littoral fish are discussed in view of the situation in its natural environment.

  20. Complete mitochondrial genome of the orange clownfish Amphiprion percula (Pisces: Perciformes, Pomacentridae).

    PubMed

    Tao, Yong; Li, Jian-Long; Liu, Min; Hu, Xue-Yi

    2016-01-01

    In this study we determined the complete mitochondrial (mt) genome of the orange clownfish Amphiprion percula. The circular mtDNA molecule was 16,645 bp in size and the overall nucleotide composition of the H-strand was 29.20% A, 25.80% T, 16.03% G and 28.98% C, with an A + T bias. The complete mitogenome encoded 13 protein-coding genes, 2 rRNAs, 22 tRNAs and 1 control region (D-loop), with the gene arrangement and translation direction basically identical to other typical vertebrate mitogenomes. The similarity of the complete mitogenomes between A. percula and A. ocellaris (AP006017) was 95.60%, clearly different at molecular level.

  1. Complete mitochondrial genome of the pink clownfish Amphiprion perideraion (Pisces: Perciformes, Pomacentridae).

    PubMed

    Hu, Xueyi; Li, Jianlong; Liu, Min

    2016-01-01

    In this study the complete mitochondrial (mt) genome of the pink clownfish Amphiprion perideraion was obtained by using eight consensus primer pairs with a long PCR technique. The circular mtDNA molecule was 16,579 bp in size and the overall nucleotide composition of the H-strand was 29.37% A, 25.50% T, 15.68% G and 29.45% C, with an A + T bias. The complete mitogenome contained 13 protein-coding genes, 2 rRNAs, 22 tRNAs and a control region, and the gene order was typical of vertebrate mitogenomes. The complete mitochondrial genome of A. perideraion is a representative of the subgenus Phalerebus for mitogenomes database of anemonefishes, which can be used to unveil taxonomic problems and phylogenetic relationships in Amphiprioninae.

  2. Complete mitochondrial genome of the yellowtail clownfish Amphiprion clarkii (Pisces: Perciformes, Pomacentridae).

    PubMed

    Tao, Yong; Li, Jian-Long; Liu, Min; Hu, Xue-Yi

    2016-01-01

    In this study we determined the complete mitochondrial (mt) genome of the yellowtail clownfish Amphiprion clarkii using eight consensus primer pairs with a long PCR technique. The circular mtDNA molecule was 16,976 bp in size and the overall nucleotide composition of the H-strand was 29.15% A, 26.15% T, 15.67% G and 29.03% C, with an A + T bias. The complete mitogenome contained 13 protein-coding genes, 2 rRNAs, 22 tRNAs and 1 control region (D-loop), and the gene order was typical of vertebrate mitogenomes. We determined five complete continuity tandem repeat units and one imperfect tandem repeat, all located downstream in the control region.

  3. Complete mitochondrial genome of the saddleback clownfish Amphiprion polymnus (Pisces: Perciformes, Pomacentridae).

    PubMed

    Li, Jian-Long; Liu, Min; Hu, Xue-Yi

    2016-01-01

    The complete mitochondrial (mt) genome of the saddleback clownfish Amphiprion polymnus was obtained in this study. The circular mtDNA molecule was 16,804 bp in size and the overall nucleotide composition of the H-strand was 29.59% A, 25.93% T, 15.44% G and 29.04% C, with an A + T bias. The complete mitogenome encoded 13 protein-coding genes, 2 rRNAs, 22 tRNAs and 1 control region (D-loop), with the gene arrangement and translation direction basically identical to other typical vertebrate mitogenomes. We found A. polymnus (KJ101554) and A. bicinctus (JQ030887) had the same length in the protein-coding gene ND5 with 1869 bp, while the ND5 in A. ocellaris (AP006017) was 3 bp less than that of A. polymnus and A. bicinctus. Both structures of ND5, however, could translate to amino acid successfully.

  4. Cytogenetics of two sympatric Corydoras species (pisces, siluriformes, challichtyidae) of Southern Brazil.

    PubMed

    Artoni, R F; Terêncio, M L; Vicari, M R; Matiello, M C A; Cestari, M M; Bertollo, L A C

    2006-02-01

    Karyotypic data are presented for two sympatric Corydoras species of the Lagoa Dourada, namely, C. ehrhadti and C. paleatus, which are found in the upper Tibagi river basin (Ponta Grossa, State of Paraná, Brazil). The same diploid number and karyotypic formula were observed in both species/populations. A great similarity in the constitutive heterochromatin distribution and in the activity of nucleolar organizer regions was also found. The use of in situ hybridization with a fluorescent 18S rDNA probe allowed for the identification of the species/populations through the location of ribosomal sites.

  5. Molecular systematics and biogeography of the circumglobally distributed genus Seriola (Pisces: Carangidae).

    PubMed

    Swart, Belinda L; von der Heyden, Sophie; Bester-van der Merwe, Aletta; Roodt-Wilding, Rouvay

    2015-12-01

    The genus Seriola includes several important commercially exploited species and has a disjunct distribution globally; yet phylogenetic relationships within this genus have not been thoroughly investigated. This study reports the first comprehensive molecular phylogeny for this genus based on mitochondrial (Cytb) and nuclear gene (RAG1 and Rhod) DNA sequence data for all extant Seriola species (nine species, n=27). All species were found to be monophyletic based on Maximum parsimony, Maximum likelihood and Bayesian inference. The closure of the Tethys Sea (12-20 MYA) coincides with the divergence of a clade containing ((S. fasciata and S. peruana), S. carpenteri) from the rest of the Seriola species, while the formation of the Isthmus of Panama (±3 MYA) played an important role in the divergence of S. fasciata and S. peruana. Furthermore, factors such as climate and water temperature fluctuations during the Pliocene played important roles during the divergence of the remaining Seriola species. Copyright © 2015 Elsevier Inc. All rights reserved.

  6. Identification of Bacterial Specialists in Hosts belonging to Aves, Mammalia, and Pisces

    EPA Science Inventory

    Only a portion of bacteria found in animal guts are able to establish specific associations within animal hosts. Taxa that have formed these specialized relationships may have played a prominent role in host evolution and may also contribute significantly to current host physiolo...

  7. Parasite community structure in Pimephales promelas (Pisces: Cyprinidae) from two converging streams.

    PubMed

    Weichman, M A; Janovy, J

    2000-06-01

    Parasites of the fathead minnow, Pimephales promelas, were examined in fish collected from Elk Creek (40.88534 degrees N, 96.83366 degrees W) and West Oak Creek (40.90821 degrees N, 96.81432 degrees W), Lancaster County, Nebraska. These 2 streams are part of the Salt Valley watershed and flow together approximately 2 km downstream from the collection sites to form Oak Creek. This study examined the extent to which the 2 tributaries constitute a continuous habitat with respect to fish hosts. The parasite community included Trichodina sp., Myxobolus sp., Dactylogyrus simplex, D. bychowskyi, and D. pectenatus (all on gills); Gyrodactylus hoffmani (gill and body surface); Posthodiplostomum sp. (neascus, body cavity); and Uvulifer ambloplitis (encysted in skin). Among 46 fish from Elk Creek and 56 fish from West Oak Creek taken on 5 dates during April-July 1998, U. ambloplitis was found in Elk Creek fish at prevalences of 44-100% but in only 2 West Oak fish on 1 date. Prevalence and mean abundance of D. simplex also differed between the 2 sites. On the basis of these observations, fish populations in the 2 streams were considered to be distinct, with little or no fish movement between the tributaries.

  8. Oocyte adhesiveness and embryonic development of Astyanax bimaculatus (Linnaeus, 1758) (Pisces: Characidae).

    PubMed

    Weber, André Alberto; Arantes, Fábio Pereira; Sato, Yoshimi; Rizzo, Elizete; Bazzoli, Nilo

    2013-05-01

    This study shows for the first time the presence of a jelly coat on oocytes of neotropical Characiformes fish. This structure could be responsible for the adhesiveness of Astyanax bimaculatus oocytes, a species widely distributed in South America including in the São Francisco River basin in Brazil. Adult specimens of A. bimaculatus were submitted to artificial reproduction in order to analyse the egg morphology and embryonic development. The eggs were fertilised and kept in incubators with a water temperature of 24°C so that embryogenesis could be monitored. Ovulated and unfertilised oocytes were also collected and submitted to routine histological techniques. Astyanax bimaculatus oocytes were found to be spherical, yellowish, and covered by a thin jelly coat with a slightly adhesive surface. The mean oocyte diameter was 1.03 ± 0.03 mm, the perivitelline space was 0.21 ± 0.02 mm and the jelly coat's thickness was 0.04 ± 0.01 mm. Positive periodic acid-Schiff (PAS) stain and Alcian blue stain pH 2.5 indicated the presence of neutral glycoproteins, and carboxylated acid glycoconjugates on the jelly coat that formed mucosubstances that may be associated with egg adhesiveness. At a water temperature of 24°C, blastopore closure and hatching occurred at 5 h and 17 h after fertilisation, respectively. The results of this study provide essential information for phylogenetic studies and for a better understanding of the reproductive strategy of A. bimaculatus, currently included in the incertae sedis group of the Characidae family due to the lack of monophyly among the families of the group.

  9. Flight Integral Field Spectrograph (IFS) Optical Design for WFIRST Coronagraphic Exoplanet Demonstration

    NASA Technical Reports Server (NTRS)

    Gong, Qian; Groff, Tyler D.; Zimmerman, Neil; Mandell, Avi; McElwain, Michael; Rizzo, Maxime; Saxena, Prabal

    2017-01-01

    Based on the experience from Prototype Imaging Spectrograph for Coronagraphic Exoplanet Studies (PISCES) for WFIRST, we have moved to the flight instrument design phase. The specifications for flight IFS have similarities and differences from the prototype. This paper starts with the science and system requirement, discusses a number of critical trade-offs: such as IFS type selection, lenslet array shape and layout versus detector pixel accuracy, how to accommodate the larger Field Of View (FOV) and wider wavelength band for a potential add-on StarShade occulter. Finally, the traditional geometric optical design is also investigated and traded: reflective versus refractive, telecentric versus non-telecentric relay. The relay before the lenslet array controls the chief angle distribution on the lenslet array. Our previous paper has addressed how the relay design combined with lenslet arraypinhole mask can further compress the residual star light and increase the contrast. Finally, a complete phase A IFS optical design is presented.

  10. Exposures of tungsten nanostructures to divertor plasmas in DIII-D

    DOE PAGES

    Rudakov, D. L.; Wong, C. P. C.; Doerner, R. P.; ...

    2016-01-22

    Tungsten nanostructures (W-fuzz) prepared in the PISCES-A linear device have been found to survive direct exposure to divertor plasmas in DIII-D. W-fuzz was exposed in the lower divertor of DIII-D using the divertor material evaluation system. Two samples were exposed in lower single null (LSN) deuterium H-mode plasmas. The first sample was exposed in three discharges terminated by vertical displacement event disruptions, and the second in two discharges near the lowered X-point. More recently, three samples were exposed near the lower outer strike point in predominantly helium H-mode LSN plasmas. In all cases, the W-fuzz survived plasma exposure with littlemore » obvious damage except in the areas where unipolar arcing occurred. In conclusion, arcing is effective in W-fuzz removal, and it appears that surfaces covered with W-fuzz can be more prone to arcing than smooth W surfaces.« less

  11. Enhanced erosion of tungsten plasma-facing components subject to simultaneous heat pulses and deuterium plasma

    NASA Astrophysics Data System (ADS)

    Umstadter, K. R.; Doerner, R.; Tynan, G.

    2009-04-01

    When an ELM occurs in tokamaks, up to 30% of the pedestal energy can be deposited on the wall of the tokamak causing heating and material loss due to sublimation/evaporation and melt layer splashing of plasma-facing components (PFCs) and expansion of the ejected material into the plasma. A short-pulse laser system capable of reproducing the thermal load of an ELM heat pulse has been integrated into the existing PFC research program in PISCES, a laboratory facility capable of reproducing plasma-materials interactions expected during normal operation of large tokamaks. An Nd:YAG laser capable of delivering up to 1 J of energy over a 7 ns pulsewidth is used for the experiments. Laser heat pulse only, H +/D + plasma only, and laser plus plasma experiments were conducted and initial results indicate enhanced erosion of tungsten exposed to simultaneous plasma and heat pulses, as compared to exposure to separate plasma-only or heat pulse-only conditions.

  12. Comparison of tungsten nano-tendrils grown in Alcator C-Mod and linear plasma devices

    NASA Astrophysics Data System (ADS)

    Wright, G. M.; Brunner, D.; Baldwin, M. J.; Bystrov, K.; Doerner, R. P.; Labombard, B.; Lipschultz, B.; De Temmerman, G.; Terry, J. L.; Whyte, D. G.; Woller, K. B.

    2013-07-01

    Growth of tungsten nano-tendrils ("fuzz") has been observed for the first time in the divertor region of a high-power density tokamak experiment. After 14 consecutive helium L-mode discharges in Alcator C-Mod, the tip of a tungsten Langmuir probe at the outer strike point was fully covered with a layer of nano-tendrils. The depth of the W fuzz layer (600 ± 150 nm) is consistent with an empirical growth formula from the PISCES experiment. Re-creating the C-Mod exposures as closely as possible in Pilot-PSI experiment can produce nearly-identical nano-tendril morphology and layer thickness at surface temperatures that agree with uncertainties with the C-Mod W probe temperature data. Helium concentrations in W fuzz layers are measured at 1-4 at.%, which is lower than expected for the observed sub-surface voids to be filled with several GPa of helium pressure. This possibly indicates that the void formation is not pressure driven.

  13. Working session 2: Tubing inspection

    DOE Office of Scientific and Technical Information (OSTI.GOV)

    Guerra, J.; Tapping, R.L.

    1997-02-01

    This session was attended by delegates from 10 countries, and four papers were presented. A wide range of issues was tabled for discussion. Realizing that there was limited time available for more detailed discussion, three topics were chosen for the more detailed discussion: circumferential cracking, performance demonstration (to focus on POD and sizing), and limits of methods. Two other subsessions were organized: one dealt with some challenges related to the robustness of current inspection methods, especially with respect to leaving cracked tubes in service, and the other with developing a chart of current NDE technology with recommendations for future development.more » These three areas are summarized in turn, along with conclusions and/or recommendations. During the discussions there were four presentations. There were two (Canada, Japan) on eddy current probe developments, both of which addressed multiarray probes that would detect a range of flaws, one (Spain) on circumferential crack detection, and one (JRC, Petten) on the recent PISC III results.« less

  14. Void statistics, scaling, and the origins of large-scale structure

    NASA Technical Reports Server (NTRS)

    Fry, J. N.; Giovanelli, Riccardo; Haynes, Martha P.; Melott, Adrian L.; Scherrer, Robert J.

    1989-01-01

    The probability that a volume of the universe of given size and shape spaced at random will be void of galaxies is used here to study various models of the origin of cosmological structures. Numerical simulations are conducted on hot-particle and cold-particle-modulated inflationary models with and without biasing, on isothermal or initially Poisson models, and on models where structure is seeded by loops of cosmic string. For the Pisces-Perseus redshift compilation of Giovanelli and Haynes (1985), it is found that hierarchical scaling is obeyed for subsamples constructed with different limiting magnitudes and subsamples taken at random. This result confirms that the hierarchical ansatz holds valid to high order and supports the idea that structure in the observed universe evolves by a regular process from an almost Gaussian primordial state. Neutrino models without biasing show the effect of a strong feature in the initial power spectrum. Cosmic string models do not agree well with the galaxy data.

  15. The velocity field of clusters of galaxies within 100 megaparsecs. II - Northern clusters

    NASA Technical Reports Server (NTRS)

    Mould, J. R.; Akeson, R. L.; Bothun, G. D.; Han, M.; Huchra, J. P.; Roth, J.; Schommer, R. A.

    1993-01-01

    Distances and peculiar velocities for galaxies in eight clusters and groups have been determined by means of the near-infrared Tully-Fisher relation. With the possible exception of a group halfway between us and the Hercules Cluster, we observe peculiar velocities of the same order as the measuring errors of about 400 km/s. The present sample is drawn from the northern Galactic hemisphere and delineates a quiet region in the Hubble flow. This contrasts with the large-scale flows seen in the Hydra-Centaurus and Perseus-Pisces regions. We compare the observed peculiar velocities with predictions based upon the gravity field inferred from the IRAS redshift survey. The differences between the observed and predicted peculiar motions are generally small, except near dense structures, where the observed motions exceed the predictions by significant amounts. Kinematic models of the velocity field are also compared with the data. We cannot distinguish between parameterized models with a great attractor or models with a bulk flow.

  16. The Structure of the Local Universe and the Coldness of the Cosmic Flow

    NASA Astrophysics Data System (ADS)

    van de Weygaert, R.; Hoffman, Y.

    Unlike the substantial coherent bulk motion in which our local patch of the Cosmos is participating, the amplitude of the random motions around this large scale flow seems to be surprisingly low. Attempts to invoke global explanations to account for this coldness of the local cosmic velocity field have not yet been succesfull. Here we propose a different view on this cosmic dilemma, stressing the repercussions of our cosmic neighbourhood embodying a rather uncharacteristic region of the Cosmos. Suspended between two huge mass concentrations, the Great Attractor region and the Perseus-Pisces chain, we find ourselves in a region of relatively low density yet with a very strong tidal shear. By means of constrained realizations of our local Universe, based on Wiener-filtered reconstructions inferred from the Mark III catalogue of galaxy peculiar velocities, we show that indeed this configuration may induce locally cold regions. Hence, the coldness of the local flow may be a cosmic variance effect.

  17. Salmo kottelati, a new species of trout from Alakır Stream, draining to the Mediterranean in southern Anatolia, Turkey (Teleostei, Salmonidae)

    PubMed Central

    Turan, Davut; Doğan, Esra; Kaya, Cüneyt; Kanyılmaz, Mahir

    2014-01-01

    Abstract Salmo kottelati sp. n., is described from Alakır Stream (Mediterranean basin) in Turkey. It is distinguished from other Anatolian Salmo species by a combination of the following characters (none unique to the species): general body colour greenish to silvery in life; 7–9 parr marks along lateral line; four dark bands on flank absent in both sexes; black ocellated spots few, present only on upper part of flank in individuals smaller than 160 mm SL but in larger both males and females black spots numerous and located on back and middle and upper part of flank; red spots few to numerous, scattered on median, and half of lower and upper part of flank; head long (length 29–33% SL in males, 26–32 in females); mouth large (length of mouth gape 13–19% SL in males, 12–15 in females); maxilla long (length 10–13% SL in males, 8–12 in females); 105–113 lateral line scales; 24–29 scale rows between lateral line and dorsal-fin origin, 17–19 scale rows between lateral line and anal-fin origin; 13–15 scales between lateral line and adipose-fin insertion. PMID:25589858

  18. A new PCR-based method shows that blue crabs (Callinectes sapidus (Rathbun)) consume winter flounder (Pseudopleuronectes americanus (Walbaum)).

    PubMed

    Collier, Jackie L; Fitzgerald, Sean P; Hice, Lyndie A; Frisk, Michael G; McElroy, Anne E

    2014-01-01

    Winter flounder (Pseudopleuronectes americanus) once supported robust commercial and recreational fisheries in the New York (USA) region, but since the 1990s populations have been in decline. Available data show that settlement of young-of-the-year winter flounder has not declined as sharply as adult abundance, suggesting that juveniles are experiencing higher mortality following settlement. The recent increase of blue crab (Callinectes sapidus) abundance in the New York region raises the possibility that new sources of predation may be contributing to juvenile winter flounder mortality. To investigate this possibility we developed and validated a method to specifically detect winter flounder mitochondrial control region DNA sequences in the gut contents of blue crabs. A survey of 55 crabs collected from Shinnecock Bay (along the south shore of Long Island, New York) in July, August, and September of 2011 showed that 12 of 42 blue crabs (28.6%) from which PCR-amplifiable DNA was recovered had consumed winter flounder in the wild, empirically supporting the trophic link between these species that has been widely speculated to exist. This technique overcomes difficulties with visual identification of the often unrecognizable gut contents of decapod crustaceans, and modifications of this approach offer valuable tools to more broadly address their feeding habits on a wide variety of species.

  19. Infectious haematopoietic necrosis virus genogroup-specific virulence mechanisms in sockeye salmon, Oncorhynchus nerka (Walbaum), from Redfish Lake, Idaho

    USGS Publications Warehouse

    Purcell, M.K.; Garver, K.A.; Conway, C.; Elliott, D.G.; Kurath, G.

    2009-01-01

    Characterization of infectious haematopoietic necrosis virus (IHNV) field isolates from North America has established three main genogroups (U, M and L) that differ in host-specific virulence. In sockeye salmon, Oncorhynchus nerka, the U genogroup is highly virulent, whereas the M genogroup is nearly non-pathogenic. In this study, we sought to characterize the virus-host dynamics that contribute to genogroup-specific virulence in a captive stock of sockeye salmon from Redfish Lake in Idaho. Juvenile sockeye salmon were challenged by immersion and injection with either a representative U or M viral strain and sampled periodically until 14 days post-infection (p.i.). Fish challenged with each strain had positive viral titre by day 3, regardless of challenge route, but the fish exposed to the M genogroup virus had significantly lower virus titres than fish exposed to the U genogroup virus. Gene expression analysis by quantitative reverse transcriptase PCR was used to simultaneously assess viral load and host interferon (IFN) response in the anterior kidney. Viral load was significantly higher in the U-challenged fish relative to M-challenged fish. Both viruses induced expression of the IFN-stimulated genes (ISGs), but expression was usually significantly lower in the M-challenged group, particularly at later time points (7 and 14 days p.i.). However, ISG expression was comparable with 3 days post-immersion challenge despite a significant difference in viral load. Our data indicated that the M genogroup virus entered the host, replicated and spread in the sockeye salmon tissues, but to a lesser extent than the U genogroup. Both virus types induced a host IFN response, but the high virulence strain (U) continued to replicate in the presence of this response, whereas the low virulence strain (M) was cleared below detectable levels. We hypothesize that high virulence is associated with early in vivo replication allowing the virus to achieve a threshold level, which the host innate immune system cannot control. ?? 2009 Blackwell Publishing Ltd.

  20. Infectious haematopoietic necrosis virus genogroup-specific virulence mechanisms in sockeye salmon, Oncorhynchus nerka (Walbaum), from Redfish Lake, Idaho.

    PubMed

    Purcell, M K; Garver, K A; Conway, C; Elliott, D G; Kurath, G

    2009-07-01

    Characterization of infectious haematopoietic necrosis virus (IHNV) field isolates from North America has established three main genogroups (U, M and L) that differ in host-specific virulence. In sockeye salmon, Oncorhynchus nerka, the U genogroup is highly virulent, whereas the M genogroup is nearly non-pathogenic. In this study, we sought to characterize the virus-host dynamics that contribute to genogroup-specific virulence in a captive stock of sockeye salmon from Redfish Lake in Idaho. Juvenile sockeye salmon were challenged by immersion and injection with either a representative U or M viral strain and sampled periodically until 14 days post-infection (p.i.). Fish challenged with each strain had positive viral titre by day 3, regardless of challenge route, but the fish exposed to the M genogroup virus had significantly lower virus titres than fish exposed to the U genogroup virus. Gene expression analysis by quantitative reverse transcriptase PCR was used to simultaneously assess viral load and host interferon (IFN) response in the anterior kidney. Viral load was significantly higher in the U-challenged fish relative to M-challenged fish. Both viruses induced expression of the IFN-stimulated genes (ISGs), but expression was usually significantly lower in the M-challenged group, particularly at later time points (7 and 14 days p.i.). However, ISG expression was comparable with 3 days post-immersion challenge despite a significant difference in viral load. Our data indicated that the M genogroup virus entered the host, replicated and spread in the sockeye salmon tissues, but to a lesser extent than the U genogroup. Both virus types induced a host IFN response, but the high virulence strain (U) continued to replicate in the presence of this response, whereas the low virulence strain (M) was cleared below detectable levels. We hypothesize that high virulence is associated with early in vivo replication allowing the virus to achieve a threshold level, which the host innate immune system cannot control.

  1. Application of AN Empirically Scaled Digital Echo Integrator for Assessment of Juvenile Sockeye Salmon (oncorhynchus Nerka Walbaum) Populations.

    NASA Astrophysics Data System (ADS)

    Nunnallee, Edmund Pierce, Jr.

    1980-03-01

    This dissertation consists of an investigation into the empirical scaling of a digital echo integrator for assessment of a population of juvenile sockeye salmon in Cultus Lake, British Columbia, Canada. The scaling technique was developed over the last ten years for use with totally uncalibrated but stabilized data collection and analysis equipment, and has been applied to populations of fish over a wide geographical range. This is the first investigation into the sources of bias and the accuracy of the technique, however, and constitutes a verification of the method. The initial section of the investigation describes hydroacoustic data analysis methods for estimation of effective sampling volume which is necessary for estimation of fish density. The second section consists of a computer simulation of effective sample volume estimation by this empirical method and is used to investigate the degree of bias introduced by electronic and physical parameters such as boat speed -fish depth interaction effects, electronic thresholding and saturation, transducer beam angle, fish depth stratification by size and spread of the target strength distribution of the fish. Comparisons of simulation predictions of sample volume estimation bias to actual survey results are given at the end of this section. A verification of the scaling method is then presented by comparison of a hydroacoustically derived estimation of the Cultus Lake smolt population to an independent and concurrent estimate made by counting the migrant fish as they passed through a weir in the outlet stream of the lake. Finally, the effect on conduct and accuracy of hydroacoustic assessment of juvenile sockeye salmon due to several behavioral traits are discussed. These traits include movements of presmolt fish in a lake just prior to their outmigration, daily vertical migrations and the emergence and dispersal of sockeye fry in Cultus Lake. In addition, a comparison of the summer depth preferences of the fish over their entire geographical distribution on the west coast of the U.S. and Canada are discussed in terms of hydroacoustic accessibility.

  2. Routine and active metabolic rates of migrating adult wild sockeye salmon (Oncorhynchus nerka Walbaum) in seawater and freshwater.

    PubMed

    Wagner, G N; Kuchel, L J; Lotto, A; Patterson, D A; Shrimpton, J M; Hinch, S G; Farrell, A P

    2006-01-01

    We present the first data on the differences in routine and active metabolic rates for sexually maturing migratory adult sockeye salmon (Oncorhynchus nerka) that were intercepted in the ocean and then held in either seawater or freshwater. Routine and active oxygen uptake rates (MO2) were significantly higher (27%-72%) in seawater than in freshwater at all swimming speeds except those approaching critical swimming speed. During a 45-min recovery period, the declining postexercise oxygen uptake remained 58%-73% higher in seawater than in freshwater. When fish performed a second swim test, active metabolic rates again remained 28%-81% higher for fish in seawater except at the critical swimming speed. Despite their differences in metabolic rates, fish in both seawater and freshwater could repeat the swim test and reach a similar maximum oxygen uptake and critical swimming speed as in the first swim test, even without restoring routine metabolic rate between swim tests. Thus, elevated MO2 related to either being in seawater as opposed to freshwater or not being fully recovered from previous exhaustive exercise did not present itself as a metabolic loading that limited either critical swimming performance or maximum MO2. The basis for the difference in metabolic rates of migratory sockeye salmon held in seawater and freshwater is uncertain, but it could include differences in states of nutrition, reproduction, and restlessness, as well as ionic differences. Regardless, this study elucidates some of the metabolic costs involved during the migration of adult salmon from seawater to freshwater, which may have applications for fisheries conservation and management models of energy use.

  3. Development of immunity in rainbow trout (Oncorhynchus mykiss, Walbaum) to Aeromonas hydrophila after the dietary application of garlic.

    PubMed

    Nya, E J; Austin, B

    2011-03-01

    The development and duration of immune protection against Aeromonas hydrophila infections with garlic as an immunostimulant in rainbow trout Oncorhynchus mykiss was studied. Rainbow trout fingerlings of 14 g average weight were fed with 0 g (=Control), 0.5 g and 1.0 g of garlic 100 g(-1) of feed for 14 days. Physiological factors, biochemical, immunological, haematological parameters and electrolyte indices were evaluated after a further 14, 21 and 28 days before challenge with Aeromonas hydrophila. Fourteen days after the cessation of feeding with garlic, mortality rates of 12% (relative percent survival [RPS] = 86%) and 16% (RPS = 80%) were recorded in groups which received 0.5 g and 1.0 g of garlic 100 g(-1) of feed, respectively, compared to 84% mortalities in the controls. The corresponding RPS 21 days after ending the feeding regime was 75% and 68, respectively. One week later, the RPS had dropped to 55% and 46% in the groups fed with 0.5 g and 1.0 g garlic 100 g(-1) of feed, respectively. Copyright © 2011 Elsevier Ltd. All rights reserved.

  4. Genetic diversity and antimicrobial resistance of Flavobacterium psychrophilum isolated from cultured rainbow trout, Onchorynchus mykiss (Walbaum), in Spain.

    PubMed

    Del Cerro, A; Márquez, I; Prieto, J M

    2010-04-01

    Flavobacterium psychrophilum is the causative agent of bacterial cold-water disease (CWD) and rainbow trout fry syndrome (RTFS) in salmonids. These diseases are a major problem in the aquaculture industry in Spain, and a better understanding of the epidemiology of F. psychrophilum isolates is necessary to improve management strategies. In this study, to investigate genetic variability of this bacterium, pulsed-field gel electrophoresis after DNA digestion with endonuclease StuI, plasmid profiling analysis and antimicrobial susceptibility testing were undertaken with 25 isolates of F. psychrophilum from Spain. These isolates were classified into 17 patterns by PFGE analysis, which were grouped into four clusters and seven independent branches. Twenty isolates (80%) possessed plasmids of 3.5 kb (n = 13) or 5.5 kb (n = 7). No plasmids were associated with antibiotic resistance to oxytetracycline (OTC) or florfenicol (FLO). Twenty isolates (80%) had minimum inhibitory concentrations (MICs) to OTC of between 2.4 and 9.7 microg mL(-1), and all isolates were susceptible to FLO. A relationship between the origin of the isolates and PFGE genotypes was found. Plasmid profile typing correlated with PFGE profile typing, whereas no correlation was found between antimicrobial susceptibility testing and PFGE profiles. These results suggest that the population of F. psychrophilum with pathogenic potential in northern Spain is quite heterogeneous.

  5. Composition and location of simulated lake-shore redds influence incubation success in kokanee, Oncorhynchus nerka

    USGS Publications Warehouse

    Fincel, M.J.; Chipps, S.R.; Bennett, D.H.

    2009-01-01

    Methods for improving spawning habitat for lakeshore spawning kokanee, Oncorhynchus nerka (Walbaum), were explored by quantifying incubation success of embryos exposed to three substrate treatments in Lake Pend Oreille, Idaho, USA. Substrate treatments included no modification that used existing gravels in the lake (EXISTING), a cleaned substrate treatment where existing gravels were sifted in the water column to remove silt (CLEANED) and the addition of new, silt-free gravel (ADDED). Incubation success was evaluated using Whitlock-Vibert incubation boxes buried within each substrate treatment that contained recently fertilised embryos. Upon retrieval, live and dead sac fry and eyed eggs were enumerated to determine incubation success (sac fry and eyed eggs ?? 100/number of fertilised embryos). Incubation success varied significantly among locations and redd treatments. In general, incubation success among ADDED redds (0.0-13.0%) was significantly lower than that for EXISTING (1.4-61.0%) and CLEANED (0.4-62.5%) redds. Adding new gravel to spawning areas changed the morphometry of the gravel-water interface and probably exposed embryos to disturbance from wave action and reduced embryo survival. Moreover, efforts to improve spawning habitat for lakeshore spawning kokanee should consider water depth and location (e.g. protected shorelines) as important variables. Adding clean gravel to existing spawning areas may provide little benefit if water depth or lake-bottom morphometry are altered. ?? 2009 Blackwell Publishing Ltd.

  6. High thermal tolerance of a rainbow trout population near its southern range limit suggests local thermal adjustment

    PubMed Central

    Verhille, Christine E.; English, Karl K.; Cocherell, Dennis E.; Farrell, Anthony P.; Fangue, Nann A.

    2016-01-01

    Transformation of earth's ecosystems by anthropogenic climate change is predicted for the 21st century. In many regions, the associated increase in environmental temperatures and reduced precipitation will have direct effects on the physiological performance of terrestrial and aquatic ectotherms and have already threatened fish biodiversity and important fisheries. The threat of elevated environmental temperatures is particularly salient for members of the Oncorhynchus genus living in California, which is the southern limit of their range. Here, we report the first assessments of the aerobic capacity of a Californian population of wild Oncorhynchus mykiss Walbaum in relationship to water temperature. Our field measurements revealed that wild O. mykiss from the lower Tuolumne River, California maintained 95% of their peak aerobic scope across an impressive temperature range (17.8–24.6°C). The thermal range for peak performance corresponds to local high river temperatures, but represents an unusually high temperature tolerance compared with conspecifics and congeneric species from northern latitudes. This high thermal tolerance suggests that O. mykiss at the southern limit of their indigenous distribution may be locally adjusted relative to more northern populations. From fisheries management and conservation perspectives, these findings challenge the use of a single thermal criterion to regulate the habitat of the O. mykiss species along the entirety of its distribution range. PMID:27957333

  7. The inhibition of tetrahydrofuran clathrate-hydrate formation with antifreeze protein

    NASA Astrophysics Data System (ADS)

    Zeng, H.; Wilson, L. D.; Walker, V. K.; Ripmeester, J. A.

    2003-01-01

    The effect of Type I fish antifreeze protein (AFP) from the winter flounder, Pleuronectes americanus (Walbaum), (WfAFP) on the formation of tetrahydrofuran (THF) clathrate hydrate was studied by observing changes in THF crystal morphology and determining the induction time for nucleation. AFP retarded THF clathrate-hydrate growth at the tested temperatures and modified the THF clathrate-hydrate crystal morphology from octahedral to plate-like. AFP appears to be even more effective than the kinetic inhibitor, polyvinylpyrrolidone (PVP). Recombinant AFP from an insect, a spruce budworm, Choristoneura fumiferana (Clem.), moth, (Cf) was also tested for inhibition activity by observation of the THF-hydrate-crystal-growth habit. Like WfAFP, CfAFP appeared to show adsorption on multiple THF-hydrate-crystal faces. A protein with no antifreeze activity, cytochrome C, was used as a control and it neither changed the morphology of the THF clathrate-hydrate crystals, nor retarded the formation of the hydrate. Preliminary experiments on the inhibition activity of WfAFP on a natural gas hydrate assessed induction time and the amount of propane gas consumed. Similar to the observations for THF, the data indicated that WfAFP inhibited propane-hydrate growth. Taken together, these results support our hypothesis that AFPs can inhibit clathrate-hydrate growth and as well, offer promise for the understanding of the inhibition mechanism.

  8. Use of non-natal estuaries by migratory striped bass (Morone saxatilis) in summer

    USGS Publications Warehouse

    Mather, M. E.; Finn, John T.; Ferry, K.H.; Deegan, Linda A.; Nelson, G.A.

    2009-01-01

    For most migratory fish, little is known about the location and size of foraging areas or how long individuals remain in foraging areas, even though these attributes may affect their growth, survival, and impact on local prey. We tested whether striped bass (Morone saxatilis Walbaum), found in Massachusetts in summer, were migratory, how long they stayed in non-natal estuaries, whether observed spatial patterns differed from random model predictions, whether fish returned to the same area across multiple years, and whether fishing effort could explain recapture patterns. Anchor tags were attached to striped bass that were caught and released in Massachusetts in 1999 and 2000, and recaptured between 1999 and 2007. In fall, tagged striped bass were caught south of where they were released in summer, confirming that fish were coastal migrants. In the first summer, 77% and 100% of the recaptured fish in the Great Marsh and along the Massachusetts coast, respectively, were caught in the same place where they were released. About two thirds of all fish recaptured near where they were released were caught 2-7 years after tagging. Our study shows that smaller (400-500 mm total length) striped bass migrate hundreds of kilometers along the Atlantic Ocean coast, cease their mobile lifestyle in summer when they use a relatively localized area for foraging (<20 km2), and return to these same foraging areas in subsequent years.

  9. Atlantic coast feeding habits of striped bass: A synthesis supporting a coast-wide understanding of trophic biology

    USGS Publications Warehouse

    Walter, J. F.; Overton, A.S.; Ferry, K.H.; Mather, M. E.

    2003-01-01

    The recent increase in the Atlantic coast population of striped bass, Morone saxatilis (Walbaum), prompted managers to re-evaluate their predatory impact. Published and unpublished diet data for striped bass on the Atlantic Coast of North America were examined for geographical, ontogenetic and seasonal patterns in the diet and to assess diet for this species. Diets of young-of-the-year (YOY) striped bass were similar across the Upper Atlantic (UPATL), Chesapeake and Delaware Bays (CBDEL) and North Carolina (NCARO) areas of the Atlantic coast where either fish or mysid shrimp dominate the diet. For age one and older striped bass, cluster analysis partitioned diets based on predominance of either Atlantic menhaden, Brevoortia tyrannus (Latrobe), characteristic of striped bass from the CBDEL and NCARO regions, or non-menhaden fishes or invertebrates, characteristic of fish from the UPATL, in the diet. The predominance of invertebrates in the diets of striped bass in the UPATL region can be attributed to the absence of several important species groups in Northern waters, particularly sciaenid fishes, and to the sporadic occurrences of Atlantic menhaden to UPATL waters. In all regions, across most seasons and in most size classes of striped bass, the clupeiod fishes; menhaden, anchovies (Anchoa spp.) and river herrings (Alosa spp,) and Atlantic herring, Clupea harengus L., dominated the diets of striped bass above the first year of life.

  10. US Atlantic coast striped bass: Issues with a recovered population

    USGS Publications Warehouse

    Hartman, K.J.; Margraf, F.J.

    2003-01-01

    Striped bass, Morone saxatilis (Walbaum), is an anadromous species naturally occurring along the US Atlantic coast, which historically supported valuable commercial and recreational fisheries. In response to a near order-of-magnitude decline in landings, the Atlantic States Marine Fisheries Commission enacted a management plan in 1981 protecting fish until they could spawn at least once. By 1989, recruitment increased in natal rivers and regulations were relaxed, permitting limited fisheries by 1990. By 1995, the stock was declared fully recovered. Since the recovery, concern has increased over the health of the stocks. In the 1990s, fish in poor physical condition with dermal lesions became common in Chesapeake Bay. Pathogens of most concern in cultures from fish include the genus Mycobacterium. Coincident with declines in fish health were changes in diets, declines of preferred prey, and reduced growth and condition. Theories were suggested linking declines in condition to reductions in forage base or pathogens. Diets have changed since the 1950s and while many Chesapeake fish are infected with mycobacteria, it is still not known how or if these factors are linked. The highest priorities for research were considered to be: linking numerous local and regional studies to provide a coast-wide perspective; continuation of investigations linking population health to the prey-base; determination of the cause-effect of mycobacteria infections; and formulation of management options.

  11. An automated approach for mapping persistent ice and snow cover over high latitude regions

    USGS Publications Warehouse

    Selkowitz, David J.; Forster, Richard R.

    2016-01-01

    We developed an automated approach for mapping persistent ice and snow cover (glaciers and perennial snowfields) from Landsat TM and ETM+ data across a variety of topography, glacier types, and climatic conditions at high latitudes (above ~65°N). Our approach exploits all available Landsat scenes acquired during the late summer (1 August–15 September) over a multi-year period and employs an automated cloud masking algorithm optimized for snow and ice covered mountainous environments. Pixels from individual Landsat scenes were classified as snow/ice covered or snow/ice free based on the Normalized Difference Snow Index (NDSI), and pixels consistently identified as snow/ice covered over a five-year period were classified as persistent ice and snow cover. The same NDSI and ratio of snow/ice-covered days to total days thresholds applied consistently across eight study regions resulted in persistent ice and snow cover maps that agreed closely in most areas with glacier area mapped for the Randolph Glacier Inventory (RGI), with a mean accuracy (agreement with the RGI) of 0.96, a mean precision (user’s accuracy of the snow/ice cover class) of 0.92, a mean recall (producer’s accuracy of the snow/ice cover class) of 0.86, and a mean F-score (a measure that considers both precision and recall) of 0.88. We also compared results from our approach to glacier area mapped from high spatial resolution imagery at four study regions and found similar results. Accuracy was lowest in regions with substantial areas of debris-covered glacier ice, suggesting that manual editing would still be required in these regions to achieve reasonable results. The similarity of our results to those from the RGI as well as glacier area mapped from high spatial resolution imagery suggests it should be possible to apply this approach across large regions to produce updated 30-m resolution maps of persistent ice and snow cover. In the short term, automated PISC maps can be used to rapidly

  12. Population dynamics of mottled sculpin (PISCES) in a variable environment: information theoretic approaches

    Treesearch

    Gary D. Grossman; Robert E Ratajczak; J. Todd Petty; Mark D. Hunter; James T. Peterson; Gael Grenouillet

    2006-01-01

    We used strong inference with Akaike's Information Criterion (AIC) to assess the processes capable of explaining long-term (1984-1995) variation in the per capita rate of change of mottled sculpin (Cottus bairdi) populations in the Coweeta Creek drainage (USA). We sampled two fourth- and one fifth-order sites (BCA [uppermost], BCB, and CC [lowermost])...

  13. Two new species of Trimma (Pisces; Gobiidae) from Fiji, south-western Pacific Ocean.

    PubMed

    Winterbottom, Richard

    2017-05-24

    Two new species of Trimma are described from Fiji. Trimma bathum n. sp. lacks scales on the cheeks, opercle and predorsal midline, has 18-19 unbranched pectoral fin rays, an unbranched 5th pelvic fin ray that is 40-56% the length of the 4th ray, 17-18 gill rakers on the outer surface of the first gill arch, a U-shaped interorbital and a narrow slit-like postorbital trench, a low, median fleshy ridge extending half-way towards the orbit from the origin of the first dorsal fin, and, when freshly collected, a pink head and body with most body scales having an orange-brown spot or short bar at their centres. The species is currently known only from off Suva Harbour, Viti Levu, Fiji. Trimma finistrinum n. sp. has a bony interorbital equal to the pupil diameter, a fully scaled nape of 12-14 scales, a second dorsal spine that may reach posteriorly to the middle of the second dorsal fin, the papillae in the longitudinal row immediately below the eye either single or with two papillae in a vertical row, unbranched pectoral fin rays, usually a branched fifth pelvic-fin ray that is about half length of the fourth ray, and a large diffuse dark blotch on the posterior part of the caudal peduncle. A colour pattern of a brownish body with most body scales having golden- to greenish-yellow (pale in preservative) centres is unique among species of the genus. The species is currently recorded only from off the north and east coasts of Viti Levu, Fiji.

  14. Male sexual polymorphism, alternative reproductive tactics, and androgens in combtooth blennies (pisces: blenniidae).

    PubMed

    Oliveira, R F; Canario, A V; Grober, M S

    2001-09-01

    In species in which intense intermale competition for the access to females is present males of lower competitive ability may adopt alternative reproductive tactics (ART) to get access to mates. These ART translate in many cases into male sexual polymorphism, with individuals following distinctly different tactics. Usually two alternative male morphs can be recognized in species with ART: (1) bourgeois males that compete for access to mates invest in typically male behaviors, such as building elaborated nests or displaying ornaments; and (2) parasitic males that take advantage of the success of the bourgeois males in attracting females and attempt "sneaker" fertilizations (e.g., sneaker and satellite males). In combtooth blennies (Blenniidae) the co-occurrence of ART and male sexual polymorphism has been described for two temperate species: the peacock blenny, Salaria pavo, and the Azorean rock-pool blenny, Parablennius sanguinolentus parvicornis. Interestingly, while in the peacock blenny the alternative male morph adopts a sneaker tactic, in the rock-pool blenny parasitic males act as satellites to nest-holder males. Thus, this variation in the ART expressed in these two closely related species allows for a comparative study of the proximate and ultimate factors affecting the expression of the two ART. In this article we summarize the available information on androgen levels in bourgeois and parasitic males of natural populations of the two species and of recent studies on the effect of exogenous administration of androgens on tactic switching in parasitic males of the two species. The information is discussed within the frame of the relative plasticity hypothesis, which predicts that plastic alternative morphs should show differences in hormone levels and that the administration of sex steroids should be effective in promoting the switch from the parasitic to bourgeois tactic. The evidence is only partly consistent with this hypothesis. Alternatively, a social transduction hypothesis that better fits the available data on androgens and ART in teleost is proposed. It states that the observed differences in androgen levels between alternative morphs should not be interpreted as an organization vs activation effect of steroids, but rather as the limited vs lifelong responsiveness of the neuroendocrine axis to social regulation. Copyright 2001 Academic Press.

  15. Tapeworms (Cestoda: Caryophyllidea), parasites of Clarias batrachus (Pisces: Siluriformes) in the Indomalayan region.

    PubMed

    Ash, Anirban; Scholz, Tomáš; Oros, Mikuláš; Kar, Pradip Kumar

    2011-06-01

    Revision of monozoic cestodes (Caryophyllidea) parasitic in commercially important walking catfish Clarias batrachus (L.) in tropical Asia (Indomalayan zoogeographical region) was carried out, based on the evaluation of newly collected material from India, Indonesia, and Thailand, as well as a study of type specimens. Instead of the 59 nominal taxa of 15 genera from 3 caryophyllidean families previously described, only 8 species of the Lytocestidae are considered to be valid: Bovienia indica (Niyogi, Gupta and Agarwal, 1982) n. comb.; Bovienia raipurensis (Satpute and Agarwal, 1980) Mackiewicz, 1994; Bovienia serialis (Bovien, 1926) Fuhrmann, 1931; Djombangia penetrans Bovien, 1926; Lucknowia microcephala (Bovien, 1926) n. comb.; Lytocestus indicus (Moghe, 1925) Woodland 1926; Pseudocaryophyllaeus ritai Gupta and Singh, 1983; and Pseudocaryophyllaeus tenuicollis (Bovien, 1926) n. comb. All valid species are redescribed and SEM photomicrographs of their scolices and photomicrographs of their eggs are provided for the first time. Crescentovitus Murhar, 1963, Heeradevina Srivastav and Khare, 2005, Pseudobatrachus Pathak and Srivastav, 2005, Pseudobilobulata Srivastav and Lohia, 2002, Pseudoclariasis Pathak, 2002, and Pseudoinverta Pathak, 2002 are invalidated and 50 nominal species are newly synonymized, including 4 species described from other fish hosts. Taxonomic status of the remaining caryophyllidean taxa reported from C. batrachus (at least 6 taxa) could not be clarified because of the unavailability of their original descriptions. A key to identification of caryophyllidean tapeworms parasitic in C. batrachus is provided. To avoid current inflation of descriptions of invalid taxa, researchers are strongly encouraged to work only with well-fixed material; damaged, decomposed, or strongly flattened specimens should not be used for taxonomic studies, and type specimens must always be deposited in internationally recognized collections.

  16. Deep-water chaunacid and lophiid anglerfishes (Pisces: Lophiiformes) off the Southeastern United States

    USGS Publications Warehouse

    Caruso, John H.; Ross, Steve W.; Sulak, Kenneth J.; Sedberry, George R.

    2007-01-01

    Recent research cruises to deep (80–910 m) reef habitats off the south-eastern U.S. and in the northern Gulf of Mexico have provided new information on the diagnostic characteristics, behaviours, colour patterns in life, bottom associations, distributions and maximum sizes of species of the anglerfish genera Chaunax, Lophiodes and Sladenia. Chaunax stigmaeus occurred much further south than previously known (Blake Plateau off South Carolina), and all C. stigmaeusobserved were found associated with dense beds of dead coral (Lophelia pertusa) rubble or on broken hard bottom. In contrast, Chaunax suttkusi was found on soft bottoms. Chaunax stigmaeusand C. suttkusi appear to be sympatric over a major portion of their ranges. Because knowledge of pigmentation in live or freshly caught Chaunax is critical to distinguish some members of the genus, changes in the colouration of C. suttkusi were noted and documented photographically immediately after death and after fixation. The yellow spots found on some, but not all specimens, temporarily disappeared completely after death, but they reappeared after fixation, slowly disappearing thereafter along with other carotenoid pigments. Lophiodes beroe andLophiodes monodi were collected for the first time off the Atlantic coast of the U.S., being previously known only from the Gulf of Mexico, Caribbean Sea and the northern coast of South America. For both species (L. beroe and L. monodi), the collections included the two largest known representatives of the species (400 and 325 mm standard length, respectively). Lophiodes beroecommonly occurred on L. pertusa rubble, and seemed to prefer this habitat. Occupying such a habitat that is deep and difficult to sample probably explains how this common species escaped detection. Only a single L. monodi was collected or observed, so this species appears to be uncommon in this geographic area or at least so on coral rubble habitat. Detailed aspects of the colour patterns of both species were noted. In particular, L. beroe displayed a characteristic pattern of white patches in life that were not apparent after death. The first photographic documentation of the colour pattern in life and of the pharyngeal pigmentation of Lophiodes reticulatus is provided. The third known specimen of Sladenia shaefersi, and the first to be taken in U.S. waters was collected from coral rubble near the base of a steep 200 m scarp on the Blake Plateau.

  17. Effect of body size and temperature on respiration of Galaxias maculatus (Pisces: Galaxiidae)

    USGS Publications Warehouse

    Milano, D.; Vigliano, P.H.; Beauchamp, David A.

    2017-01-01

    Body mass and temperature are primary determinants of metabolic rate in ectothermic animals. Oxygen consumption of post-larval Galaxias maculatus was measured in respirometry trials under different temperatures (5–21°C) and varying body masses (0.1–>1.5 g) spanning a relevant range of thermal conditions and sizes. Specific respiration rates (R in g O2 g−1 d−1) declined as a power function of body mass and increased exponentially with temperature and was expressed as: R = 0.0007 * W −0.31 * e 0.13 * T. The ability of this model to predict specific respiration rate was evaluated by comparing observed values with those predicted by the model. Our findings suggest that the respiration rate of G. maculatus is the result of multiple interactive processes (intrinsic and extrinsic factors) that modulate each other in ‘meta-mechanistic’ ways; this would help to explain the species’ ability to undergo the complex ontogenetic habitat shifts observed in the lakes of the Andean Patagonic range.

  18. Molecular Phylogeny and Zoogeography of the Capoeta damascina Species Complex (Pisces: Teleostei: Cyprinidae).

    PubMed

    Alwan, Nisreen; Esmaeili, Hamid-Reza; Krupp, Friedhelm

    2016-01-01

    Capoeta damascina was earlier considered by many authors as one of the most common freshwater fish species found throughout the Levant, Mesopotamia, Turkey, and Iran. However, owing to a high variation in morphological characters among and within its various populations, 17 nominal species were described, several of which were regarded as valid by subsequent revising authors. Capoeta damascina proved to be a complex of closely related species, which had been poorly studied. The current study aims at defining C. damascina and the C. damascina species complex. It investigates phylogenetic relationships among the various members of the C. damascina complex, based on mitochondrial and nuclear DNA sequences. Phylogenetic relationships were projected against paleogeographical events to interpret the geographic distribution of the taxa under consideration in relation to the area's geological history. Samples were obtained from throughout the geographic range and were subjected to genetic analyses, using two molecular markers targeting the mitochondrial cytochrome oxidase I (n = 103) and the two adjacent divergence regions (D1-D2) of the nuclear 28S rRNA genes (n = 65). Six closely related species were recognized within the C. damascina complex, constituting two main lineages: A western lineage represented by C. caelestis, C. damascina, and C. umbla and an eastern lineage represented by C. buhsei, C. coadi, and C. saadii. The results indicate that speciation of these taxa is rather a recent event. Dispersal occurred during the Pleistocene, resulting in present-day distribution patterns. A coherent picture of the phylogenetic relationships and evolutionary history of the C. damascina species complex is drawn, explaining the current patterns of distribution as a result of paleogeographic events and ecological adaptations.

  19. Molecular Phylogeny and Zoogeography of the Capoeta damascina Species Complex (Pisces: Teleostei: Cyprinidae)

    PubMed Central

    Alwan, Nisreen; Esmaeili, Hamid-Reza; Krupp, Friedhelm

    2016-01-01

    Capoeta damascina was earlier considered by many authors as one of the most common freshwater fish species found throughout the Levant, Mesopotamia, Turkey, and Iran. However, owing to a high variation in morphological characters among and within its various populations, 17 nominal species were described, several of which were regarded as valid by subsequent revising authors. Capoeta damascina proved to be a complex of closely related species, which had been poorly studied. The current study aims at defining C. damascina and the C. damascina species complex. It investigates phylogenetic relationships among the various members of the C. damascina complex, based on mitochondrial and nuclear DNA sequences. Phylogenetic relationships were projected against paleogeographical events to interpret the geographic distribution of the taxa under consideration in relation to the area’s geological history. Samples were obtained from throughout the geographic range and were subjected to genetic analyses, using two molecular markers targeting the mitochondrial cytochrome oxidase I (n = 103) and the two adjacent divergence regions (D1-D2) of the nuclear 28S rRNA genes (n = 65). Six closely related species were recognized within the C. damascina complex, constituting two main lineages: A western lineage represented by C. caelestis, C. damascina, and C. umbla and an eastern lineage represented by C. buhsei, C. coadi, and C. saadii. The results indicate that speciation of these taxa is rather a recent event. Dispersal occurred during the Pleistocene, resulting in present-day distribution patterns. A coherent picture of the phylogenetic relationships and evolutionary history of the C. damascina species complex is drawn, explaining the current patterns of distribution as a result of paleogeographic events and ecological adaptations. PMID:27309854

  20. Characterization of natural variation in North American Atlantic Salmon populations (Salmonidae: Salmo salar) at a locus with a major effect on sea age.

    PubMed

    Kusche, Henrik; Côté, Guillaume; Hernandez, Cécilia; Normandeau, Eric; Boivin-Delisle, Damien; Bernatchez, Louis

    2017-08-01

    Age at maturity is a key life-history trait of most organisms. In anadromous salmonid fishes such as Atlantic Salmon ( Salmo salar ), age at sexual maturity is associated with sea age, the number of years spent at sea before the spawning migration. For the first time, we investigated the presence of two nonsynonymous vgll3 polymorphisms in North American Atlantic Salmon populations that relate to sea age in European salmon and quantified the natural variation at these and two additional candidate SNPs from two other genes. A targeted resequencing assay was developed and 1,505 returning adult individuals of size-inferred sea age and sex from four populations were genotyped. Across three of four populations sampled in Québec, Canada, the late-maturing component (MSW) of the population of a given sex exhibited higher proportions of SNP genotypes 54Thr vgll3 and 323Lys vgll3 compared to early-maturing fish (1SW), for example, 85% versus 53% of females from Trinité River carried 323Lys vgll3 ( n MSW  = 205 vs. n 1SW  = 30; p <  .001). However, the association between vgll3 polymorphism and sea age was more pronounced in females than in males in the rivers we studied. Logistic regression analysis of vgll3 SNP genotypes revealed increased probabilities of exhibiting higher sea age for 54Thr vgll3 and 323Lys vgll3 genotypes compared to alternative genotypes, depending on population and sex. Moreover, individuals carrying the heterozygous vgll3 SNP genotypes were more likely (>66%) to be female. In summary, two nonsynonymous vgll3 polymorphisms were confirmed in North American populations of Atlantic Salmon and our results suggest that variation at those loci correlates with sea age and sex. Our results also suggest that this correlation varies among populations. Future work would benefit from a more balanced sampling and from adding data on juvenile riverine life stages to contrast our data.

  1. Conserving large-river fishes: Is the highway analogy an appropriate paradigm

    USGS Publications Warehouse

    Galat, D.L.; Zweimuller, I.

    2001-01-01

    A tenet of the flood pulse concept, the highway analogy, states that the mare channel of large floodplain rivers is used by fishes mainly as a route for gaining access to floodplain habitats. We examined this proposition by analyzing habitat use for freshwater fishes in 4 large rivers in the United States (Colorado, Columbia, Mississippi, Missouri) and 4 in Europe (Danube, Rhine, Rho??ne, Volga). Fish species from floodplain segments of each river were classified as fluvial specialist, fluvial dependent, and macrohabitat generalist based on literature and expert opinion. We also summarized the proportion of imperiled and introduced fishes present in each of these categories. The high proportion (mean ?? 1 SD = 29 ?? 17.5%) of fluvial specialist fishes inhabiting north-temperate large rivers was inconsistent with the highway analogy. Most members of the families Petromyzontidae, Acidpenseridae, Hiodontidae, Osmeridae, Salmonidae, and Gobiidae require flowing water during some life stage. Between 29 and 100% of the native fish assemblage was of conservation concern, and from 50 to 85% of these fishes required riverine habitats to complete their life cycles. Macrohabitat generalists are adapted to capitalize on floodplain habitats and composed from 44 to 96% of introduced fishes in the rivers studied. Habitat diversity inherent in main-channel complexes of unaltered large rivers and reestablished in regulated large rivers is essential to meet life-history needs of native fluvial fishes while discouraging expansion of introduced species. Restoration of north-temperate large rivers and their native fish fauna should incorporate the dynamic interplay among main channel, floodplain, and tributary habitats and processes.

  2. Causes of acidification of four streams on Laurel Hilld in southwestern Pennsylvania

    USGS Publications Warehouse

    Sharpe, William E.; DeWalle, David R.; Leibfried, Robert T.; Dinicola, Richard S.; Kimmel, William G.; Sherwin, Lysle S.

    1984-01-01

    Atmospheric deposition, soils developed from bedrock, a natural bog, gas wells, and a ski area were all investigated as possible sources of water quality degradation for four streams on Laurel Hill in southwestern Pennsylvania where fish kills have been reported since 1960. An intensive study of the chemistry of atmospheric deposition, soil leachate, and stream water and fish populations was conducted on these basins during 1980–1981 with emphasis on dormant season periods with runoff from snowmelt and rain. Although bedrock geology was found to control the natural buffering capacity of these streams, only acid precipitation could be linked to sharp drops in pH and increases in total Al concentrations observed during stormflows in the poorly buffered streams. Three poorly buffered streams exhibited drops to pH 4.4 to 4.5 and increases in total Al concentrations up to 1.5 mg/L during observed peak flows. Mineral soil leachate from the three major soil series on the basins during this time exhibited a low pH of 4.3 and mean total Al concentrations of 3.6 mg/L, indicating stream response during storms was closely linked to chemistry of soil leachate. Poorly buffered streams did not support reproducing populations of trout (Salmonidae sp.) or other fishes. In contrast, one well-buffered stream (20 mg/L CaCO3) exhibited drops to pH 5.5 during peak flow and supported reproducing trout and sculpin (Cottus bairdi) populations. The acidification of the four streams studied was attributed to atmospheric deposition.

  3. Columbia River Fishes of the Lewis and Clark Expedition

    DOE Office of Scientific and Technical Information (OSTI.GOV)

    Dauble, Dennis D.

    2007-06-21

    The Lewis and Clark expedition crossed the Continental Divide in 1805 on the way west to the Pacific Ocean. Based on journal entries, members of the expedition probably encountered two species of resident salmonids and four of the six species of anadromous salmonids and steelhead (Family Salmonidae, genus Oncorhynchus). The salmonid species were called common salmon (now known as Chinook salmon O. tshawytscha), red char (sockeye salmon O.nerka) white salmon trout (coho salmon [also known as silver salmon] O. kisutch), salmon trout (steelhead O. mykiss), and spotted trout (cutthroat trout O. clarkii). There was no evidence of the expedition encounteringmore » pink salmon O. gorbuscha, chum salmon O. keta, or species of true char Salvelinus spp. Common fishes procured from Indian tribes living along the lower Columbia River included eulachon Thaleichthys pacificus and white sturgeon Acipenser transmontanus. The identity of three additional resident freshwater species is questionable. Available descriptions suggest that what they called mullet were largescale sucker Catastomus macrocheilus, and that chubb were peamouth Mylocheilus caurinus. The third questionable fish, which they called bottlenose, was probably mountain whitefish Prosopium williamsoni, although there is no evidence that the species was observed in the Columbia River drainage. Missing from the species list were more than 20 other fishes known to Sahaptin-speaking people from the mid-Columbia region. More complete documentation of the icthyofauna of the Pacific Northwest region did not occur until the latter half of the 19th century. However, journals from the Lewis and Clark expedition provide the first documentation of Columbia River fishes.« less

  4. Genetic improvement of feed conversion ratio via indirect selection against lipid deposition in farmed rainbow trout (Oncorhynchus mykiss Walbaum).

    PubMed

    Kause, Antti; Kiessling, Anders; Martin, Samuel A M; Houlihan, Dominic; Ruohonen, Kari

    2016-11-01

    In farmed fish, selective breeding for feed conversion ratio (FCR) may be possible via indirectly selecting for easily-measured indicator traits correlated with FCR. We tested the hypothesis that rainbow trout with low lipid% have genetically better FCR, and that lipid% may be genetically related to retention efficiency of macronutrients, making lipid% a useful indicator trait. A quantitative genetic analysis was used to quantify the benefit of replacing feed intake in a selection index with one of three lipid traits: body lipid%, muscle lipid% or viscera% weight of total body weight (reflecting visceral lipid). The index theory calculations showed that simultaneous selection for weight gain and against feed intake (direct selection to improve FCR) increased the expected genetic response in FCR by 1·50-fold compared with the sole selection for growth. Replacing feed intake in the selection index with body lipid%, muscle lipid% or viscera% increased genetic response in FCR by 1·29-, 1·49- and 1·02-fold, respectively, compared with the sole selection for growth. Consequently, indirect selection for weight gain and against muscle lipid% was almost as effective as direct selection for FCR. Fish with genetically low body and muscle lipid% were more efficient in turning ingested protein into protein weight gain. Both physiological and genetic mechanisms promote the hypothesis that low-lipid% fish are more efficient. These results highlight that in breeding programmes of rainbow trout, control of lipid deposition improves not only FCR but also protein-retention efficiency. This improves resource efficiency of aquaculture and reduces nutrient load to the environment.

  5. GH and IGF-I induction by passive immunization of rainbow trout Oncorhynchus mykiss Walbaum using a somatostatin 14 antibody

    USDA-ARS?s Scientific Manuscript database

    Inhibition of the growth axis by somatostatin was studied in juvenile rainbow trout using passive immunization with a previously isolated somatostatin antibody (antiSS-14). Upon subcutaneously injection of laying hens (Gallus domesticus) with conjugated somatostatin-14 (SS-14), the antiSS-14 was iso...

  6. Population Genetic Patterns of Threatened European Mudminnow (Umbra krameri Walbaum, 1792) in a Fragmented Landscape: Implications for Conservation Management

    PubMed Central

    Takács, Péter; Erős, Tibor; Specziár, András; Sály, Péter; Vitál, Zoltán; Ferincz, Árpád; Molnár, Tamás; Szabolcsi, Zoltán; Bíró, Péter; Csoma, Eszter

    2015-01-01

    The European mudminnow (Umbra krameri) is a Middle Danubian endemic fish species, which is characterised by isolated populations living mainly in artificial habitats in the centre of its range, in the Carpathian Basin. For their long term preservation, reliable information is needed about the structure of stocks and the level of isolation. The recent distribution pattern, and the population genetic structure within and among regions were investigated to designate the Evolutionary Significant, Conservation and Management Units (ESUs, CUs, MUs) and to explore the conservation biological value of the shrinking populations. In total, eight microsatellite loci were studied in 404 specimens originating from eight regions. The results revealed a pronounced population structure, where strictly limited gene flow was detected among regions, as well as various strengths of connections within regions. Following the results of hierarchical structure analyses, two ESUs were supposed in the Carpathian Basin, corresponding to the Danube and Tisza catchments. Our results recommend designating the borders of CUs in an 80–90km range and 16 clusters should be set up as MUs for the 33 investigated populations. How these genetic findings can be used to better allocate conservation resources for the long term maintenance of the metapopulation structure of this threathened endemic fish is discussed. PMID:26393510

  7. Extremely short lifespan in the annual fish Nothobranchius furzeri.

    PubMed Central

    Valdesalici, Stefano; Cellerino, Alessandro

    2003-01-01

    Evolutionary theories of senescence postulate that lifespan is determined by the age-dependent decrease in the effects of natural selection. Factors that influence survival and reproduction at early life stages have a larger impact on fitness than factors that influence later life stages. According to these views, selection for rapid sexual maturation and a steep age-dependent decrease in fitness drive the evolution of short lifespans. Here, we report on the survival trajectory of Nothobranchius furzeri (Pisces: Ciprinodontidae): a member of a group of annual species found in temporary bodies of water whose life expectancy in the wild is limited to a few months. We find that maximum survival of N. furzeri in the laboratory is less than 12 weeks. The temporal trajectory of survival shows an age-dependent increase in the mortality rate that is typical of organisms with defined lifespans. The lifespan of N. furzeri is exceptionally short for a vertebrate: owing to its small size and the possibility of propagation in captivity, N. furzeri could be used as a convenient model for ageing research. PMID:14667379

  8. A Hero’s Dark Horse: Discovery of an Ultra-faint Milky Way Satellite in Pegasus

    NASA Astrophysics Data System (ADS)

    Kim, Dongwon; Jerjen, Helmut; Mackey, Dougal; Da Costa, Gary S.; Milone, Antonino P.

    2015-05-01

    We report the discovery of an ultra-faint Milky Way satellite galaxy in the constellation of Pegasus. The concentration of stars was detected by applying our overdensity detection algorithm to the SDSS-DR 10 and confirmed with deeper photometry from the Dark Energy Camera at the 4 m Blanco telescope. Fitting model isochrones indicates that this object, Pegasus III, features an old and metal-poor stellar population ([Fe/H] ˜ -2.1) at a heliocentric distance of 205 ± 20 kpc. The new stellar system has an estimated half-light radius of {{r}h}=78-24+30 pc and a total luminosity of {{M}V}˜ -4.1+/- 0.5 that places it into the domain of dwarf galaxies on the size-luminosity plane. Pegasus III is spatially close to the MW satellite Pisces II. It is possible that the two might be physically associated, similar to the Leo IV and Leo V pair. Pegasus III is also well aligned with the Vast Polar Structure, which suggests a possible physical association.

  9. DOE Office of Scientific and Technical Information (OSTI.GOV)

    Johnson, Gary E.; Diefenderfer, Heida L.

    This annual report is a deliverable for fiscal year 2007 (FY07) for Project 2002-077-00, Facilitation of the Estuary/Ocean Subgroup (EOS). The EOS is part of the research, monitoring, and evaluation (RME) effort of the Action Agencies (Bonneville Power Administration, U.S. Army Corps of Engineers, U.S. Bureau of Reclamation) developed in response to responsibilities arising from the Endangered Species Act as a result of operation of the Federal Columbia River Power System (FCRPS). The goal of the EOS project is to facilitate activities of the estuary/ocean RME subgroup as it coordinates design and implementation of federal RME in the lower Columbiamore » River and estuary. In FY07, EOS project accomplishments included (1) subgroup meetings; (2) participation in the estuary work group of the Pacific Northwest Aquatic Monitoring Partnership; (3) project management via the project tracking system, PISCES; (4) quarterly project status reports; and (5) a major revision to the Estuary RME Plan (new version September 2007) based on comments by EOS members and invited reviewers.« less

  10. DOE Office of Scientific and Technical Information (OSTI.GOV)

    Johnson, Gary E.; Diefenderfer, Heida L.

    This annual report is a deliverable for fiscal year 2007 (FY07) for Project 2002-077-00, Facilitation of the Estuary/Ocean Subgroup (EOS). The EOS is part of the research, monitoring, and evaluation (RME) effort the Action Agencies (Bonneville Power Administration, U.S. Army Corps of Engineers, U.S. Bureau of Reclamation) developed in response to responsibilities arising from the Endangered Species Act as a result of operation of the Federal Columbia River Power System (FCRPS). The goal of the EOS project is to facilitate activities of the estuary/ocean RME subgroup as it coordinates design and implementation of federal RME in the lower Columbia Rivermore » and estuary. In FY07, EOS project accomplishments included 1) subgroup meetings; 2) participation in the estuary work group of the Pacific Northwest Aquatic Monitoring Partnership; 3) project management via the project tracking system, PISCES; 4) quarterly project status reports; and 5) a major revision to the Estuary RME Plan (new version September 2007) based on comments by EOS members and invited reviewers.« less

  11. A parametric study of helium retention in beryllium and its effect on deuterium retention

    NASA Astrophysics Data System (ADS)

    Alegre, D.; Baldwin, M. J.; Simmonds, M.; Nishijima, D.; Hollmann, E. M.; Brezinsek, S.; Doerner, R. P.

    2017-12-01

    Beryllium samples have been exposed in the PISCES-B linear plasma device to conditions relevant to the International Thermonuclear Experimental Reactor (ITER) in pure He, D, and D/He mixed plasmas. Except at intermediate sample exposure temperatures (573-673 K) He addition to a D plasma is found to have a beneficial effect as it reduces the D retention in Be (up to ˜55%), although the mechanism is unclear. Retention of He is typically around 1020-1021 He m-2, and is affected primarily by the Be surface temperature during exposition, by the ion fluence at <500 K exposure, but not by the ion impact energy at 573 K. Contamination of the Be surface with high-Z elements from the mask of the sample holder in pure He plasmas is also observed under certain conditions, and leads to unexpectedly large He retention values, as well as changes in the surface morphology. An estimation of the tritium retention in the Be first wall of ITER is provided, being sufficiently low to allow a safe operation of ITER.

  12. Mixed plasma species effects on Tungsten

    NASA Astrophysics Data System (ADS)

    Baldwin, Matt; Doerner, Russ; Nishijima, Daisuke; Ueda, Yoshio

    2007-11-01

    The diverted reactor exhaust in confinement machines like ITER and DEMO will be intense-mixed plasmas of fusion (D, T, He) and wall species (Be, C, W, in ITER and W in DEMO), characterized by tremendous heat and particle fluxes. In both devices, the divertor walls are to be exposed to such plasma and must operate at high temperature for long durations. Tungsten, with its high-melting point and low-sputtering yield is currently viewed as the leading choice for divertor-wall material in this next generation class of fusion devices, and is supported by an enormous amount of work that has been done to examine its performance in hydrogen isotope plasmas. However, studies of the more realistic scenario, involving mixed species interactions, are considerably less. Current experiments on the PISCES-B device are focused on these issues. The formation of Be-W alloys, He induced nanoscopic morphology, and blistering, as well as mitigation influences on these effects caused by Be and C layer formation have all been observed. These results and the corresponding implications for ITER and DEMO will be presented.

  13. Subunit vaccine candidates against Aeromonas salmonicida in rainbow trout Oncorhynchus mykiss.

    PubMed

    Marana, Moonika Haahr; Jørgensen, Louise von Gersdorff; Skov, Jakob; Chettri, Jiwan Kumar; Holm Mattsson, Andreas; Dalsgaard, Inger; Kania, Per Walter; Buchmann, Kurt

    2017-01-01

    Aeromonas salmonicida subsp. salmonicida is the etiological agent of furunculosis and a major fish health problem in salmonid aquaculture worldwide. Injection vaccination with commercial mineral oil-adjuvanted bacterin vaccines has been partly successful in preventing the disease but in Danish rainbow trout (Oncorhynchus mykiss, Walbaum) aquaculture furunculosis outbreaks still occur. In this study we tested the efficacy of experimental subunit vaccines against A. salmonicida infection in rainbow trout. We utilized in silico screening of the proteome of A. salmonicida subsp. salmonicida strain A449 and identified potential protective protein antigens that were tested by in vivo challenge trial. A total of 14 proteins were recombinantly expressed in Escherichia coli and prepared in 3 different subunit vaccine combinations to immunize 3 groups of rainbow trout by intraperitoneal (i.p.) injection. The fish were exposed to virulent A. salmonicida 7 weeks after immunization. To assess the efficacy of the subunit vaccines we evaluated the immune response in fish after immunization and challenge infection by measuring the antibody levels and monitoring the survival of fish in different groups. The survival of fish at 3 weeks after challenge infection showed that all 3 groups of fish immunized with 3 different protein combinations exhibited significantly lower mortalities (17-30%) compared to the control groups (48% and 56%). The ELISA results revealed significantly elevated antibody levels in fish against several protein antigens, which in some cases were positively correlated to the survival.

  14. Physiological response of juvenile rainbow trout to chronic low level exposures of waterborne silver.

    PubMed

    Galvez, F; Hogstrand, C; Wood, C M

    1998-02-01

    The physiological effects of chronic exposure to AgNO3 in moderately hard freshwater were investigated in juvenile rainbow trout (Oncorhynchus mykiss Walbaum). Two separate 28-day exposures were performed at silver concentrations of 0.5 and 2.0 micrograms/L in flowing Hamilton dechlorinated tap water. Exposure to 0.5 microgram/L Ag resulted in a slight increase (approximately 14.9%) in food consumption, whereas growth rates remained unaltered. Both plasma Na+ and Cl- levels were significantly decreased by 11.8% and 9.3%, respectively at day 16 of the exposure. Hepatic Ag concentrations were elevated approximately 4-fold in 0.5 microgram/L Ag-exposed fish. However, no significant increases in liver metallothionein (MT) concentrations were noted. No mortalities were observed during this 28-day exposure. In comparison, chronic exposure to 2.0 micrograms/L Ag resulted in a 28.8% decrease in food consumption and a 43.0% reduction in growth rate. Plasma [Na+] was decreased by 18.3%, whereas plasma [Cl-] was reduced by 12.2% at day 7. At both concentrations of silver, plasma ion concentrations appeared to recover thereafter. Silver accumulated steadily in the liver up until day 15 when concentrations were 39.7 micrograms/g wet weight (285-fold increase) above control levels. In addition, MT levels were increased by 81.2% at day 7. Silver exposure at 2.0 micrograms/L resulted in approximately 15.0% mortality over the 28-day period.

  15. Testing the thermal-niche oxygen-squeeze hypothesis for estuarine striped bass

    USGS Publications Warehouse

    Kraus, Richard T.; Secor, D.H.; Wingate, Rebecca L.

    2015-01-01

    In many stratified coastal ecosystems, conceptual and bioenergetics models predict seasonal reduction in quality and quantity of fish habitat due to high temperatures and hypoxia. We tested these predictions using acoustic telemetry of 2 to 4 kg striped bass (Morone saxatilis Walbaum) and high-resolution spatial water quality sampling in the Patuxent River, a sub-estuary of the Chesapeake Bay, during 2008 and 2009. Striped bass avoided hypoxic (dissolved oxygen ≤2 mg·l−1) subpycnocline waters, but frequently occupied habitats with high temperatures (>25 °C) in the summer months, as cooler habitats were typically not available. Using traditional concepts of the seasonal thermal-niche oxygen-squeeze, most of the Patuxent estuary would beconsidered unsuitable habitat for adult striped bass during summer. Application of a bioenergetics model revealed that habitats selected by striped bass during summer would support positive growth rates assuming fish could feed at one-half ofmaximum consumption. Occupancy of the estuary during summer by striped bass in this study was likely facilitated by sufficient prey and innate tolerance of high temperatures by sub-adult fish of the size range that we tagged. Our results help extend the thermalniche oxygen-squeeze hypothesis to native populations of striped bass in semi-enclosed coastal systems. Tolerance of for supraoptimal temperatures in our study supports recent suggestions by others that the thermal-niche concept for striped bass should be revised to include warmer temperatures.

  16. [Micropterus salmoides (Pisces: Centrarchidae) reproduction in the Gustavo Diaz Ordaz reservoir, Sinaloa, México].

    PubMed

    Beltrán Alvarez, Rigoberto; Sánchez Palacios, Jesús; Ramírez Lozano, Juan Pedro; Ortega Salas, Adolfo-Armando

    2013-09-01

    Micropterus salmoides is an important fish species for sport fishing activities, condition that has promoted its introduction to different reservoirs in Mexico and worldwide. With the aim to improve its fisheries management, this research dealt with some reproductive aspects of this species in the Gustavo Diaz Ordaz reservoir, where it was studied from August 2008 through March 2011. To this end, we obtained 938 specimens, with gillnets of different sizes, to determine their total length (Lt, in cm), weight (Pt, in g), sex, gonadosomatic index, condition factor, fecundity and size at first maturity. Lt and Pt ranged from 15.9 to 63 cm (37.4 +/- 78.0) and 57 to 4431 g (731.7 +/- 619.0), respectively. The Pt-Lt relationship showed a positive allometric growth, with no significant difference between males and females (F = 0.9955, p = 0.3187). The male: female ratio obtained was 1:0.83. Mass spawning lasted from December to April. Size at first maturity was 33.7 cm and average fecundity was 32294 +/- 12878.7 oocytes/female. The gonadosomatic index was low from May through November, and increased between January and March. The condition factor was high before the spawning season and decreased after the reproductive period. We recommend a fishing ban from January to March, and to allow the capture size between 33 and 40 cm.

  17. Distribution of the deep-sea genus Bathypterois (Pisces: Ipnopidae) in the Eastern Central Pacific.

    PubMed

    Cruz-Acevedo, Edgar; Betancourt-Lozano, Miguel; Aguirre-Villaseñor, Hugo

    2017-03-01

    The genus Bathypterois (tripod fish) comprises 19 species of deep-sea fishes distributed worldwide. The biology and distribution of the species of this genus are relatively poorly known throughout the Eastern Central Pacific (ECP). This work aims to update the geographic and bathymetric distribution of species of Bathypterois throughout the ECP. To describe the influence of depth, temperature and dissolved oxygen concentrations (DO) on latitudinal and depth distribution of members of the genus throughout the Mexican Pacific, 51 specimens of B. atricolor (12 trawls) and 112 of B. ventralis (18 trawls), collected during TALUD project, were analyzed. Bathypterois atricolor had broader environmental niches (depth: 0.47, temperature: 0.46, DO: 0.39), and inhabits deeper and colder sites (Electivity positives: > 1 000 m, < 3.2 °C, 1.0-1.62 mL/L) than B. ventralis, which had narrow environmental niches (depth: 0.34, temperature: 0.32, DO: 0.28), with high affinity to warmer sites and lower DO concentrations (Electivity positives: 778-1 400 m, 3.3-5.8 °C, < 1.0 mL/L). Both species used different environmental strata (niche overlap; depth: 0.34, temperature: 0.32, DO: 0.28). The adaptation of B. atricolor to live in a broad range of DO concentrations explains its almost circumglobal distribution, while B. ventralis lives almost permanently in the Oxygen Minimum Zone (< 0.05 mL/L), so the DO could be a limiting factor, reducing its potential geographic and bathymetric distributions. None of these species had been previously recorded in the central Gulf of California, and B. ventralis had not been recorded along the West coast of Baja California. This study confirms that both species have a continuous distribution within the ECP, our new records extended the known northernmost range for B. atricolor by 886 km (from 22°46' N to 30°45’ N) and for B. ventralis by 645 km (from 21°18’ N to 27°07’ N).

  18. Deep-water chaunacid and lophiid anglerfishes (Pisces: Lophiiformes) off the south-eastern United States

    USGS Publications Warehouse

    Caruso, John H.; Ross, Steve W.; Sulak, K.J.; Sedberry, G.R.

    2007-01-01

    Recent research cruises to deep (80-910 m) reef habitats off the south-eastern U.S. and in the northern Gulf of Mexico have provided new information on the diagnostic characteristics, behaviours, colour patterns in life, bottom associations, distributions and maximum sizes of species of the anglerfish genera Chaunax, Lophiodes and Sladenia. Chaunax stigmaeus occurred much further south than previously known (Blake Plateau off South Carolina), and all C. stigmaeus observed were found associated with dense beds of dead coral (Lophelia pertusa) rubble or on broken hard bottom. In contrast, Chaunax suttkusi was found on soft bottoms. Chaunax stigmaeus and C. suttkusi appear to be sympatric over a major portion of their ranges. Because knowledge of pigmentation in live or freshly caught Chaunax is critical to distinguish some members of the genus, changes in the colouration of C. suttkusi were noted and documented photographically immediately after death and after fixation. The yellow spots found on some, but not all specimens, temporarily disappeared completely after death, but they reappeared after fixation, slowly disappearing thereafter along with other carotenoid pigments. Lophiodes beroe and Lophiodes monodi were collected for the first time off the Atlantic coast of the U.S., being previously known only from the Gulf of Mexico, Caribbean Sea and the northern coast of South America. For both species (L. beroe and L. monodi), the collections included the two largest known representatives of the species (400 and 325 mm standard length, respectively). Lophiodes beroe commonly occurred on L. pertusa rubble, and seemed to prefer this habitat. Occupying such a habitat that is deep and difficult to sample probably explains how this common species escaped detection. Only a single L. monodi was collected or observed, so this species appears to be uncommon in this geographic area or at least so on coral rubble habitat. Detailed aspects of the colour patterns of both species were noted. In particular, L. beroe displayed a characteristic pattern of white patches in life that were not apparent after death. The first photographic documentation of the colour pattern in life and of the pharyngeal pigmentation of Lophiodes reticulatus is provided. The third known specimen of Sladenia shaefersi, and the first to be taken in U.S. waters was collected from coral rubble near the base of a steep 200 m scarp on the Blake Plateau. ?? 2007 The Fisheries Society of the British Isles.

  19. Sexual selection on the multicomponent display of black morph male Girardinus metallicus (Pisces: Poeciliidae).

    PubMed

    Wojan, E M; Bertram, S M; Clendenen, D A; Castillo, C; Neldner, H M; Kolluru, G R

    2018-05-01

    Sexually selected displays often include suites of integrated traits. Black morph males of the poeciliid fish Girardinus metallicus perform courtship and aggressive displays that exhibit their conspicuous yellow and black coloration. Body size, gonopodium size and ventral black area are correlated with intermale aggression, which is key for access to mates. A previous study showed that females may prefer dominant males prior to watching them fight; however, that result was obtained in trials that allowed for male-male interactions across partitions, and to date no study has uncovered the traits important in female choice. We performed a more comprehensive investigation of the multicomponent sexual display including measures of male yellow hue, saturation and brightness. We examined the behavior of size-matched males paired to maximize the difference in yellow saturation, and measured female choice exclusive of male-male interactions and chemical cues. We found no female preference for any traits in the multicomponent sexual display. Males with brighter and more saturated yellow coloration were more likely to be dominant, and dominant males courted and attempted copulations more. Our results suggest that yellow coloration is sexually selected; however, the courtship display requires further investigation because we did not identify targets of female preference, and we discuss possible explanations for this finding. Copyright © 2018 Elsevier B.V. All rights reserved.

  20. Atactorhynchus duranguensis n. sp. (Acanthocephala: Atactorhynchinae) from Cyprinodon meeki (Pisces: Cyprinodontidae) near Durango, Mexico.

    PubMed

    Salgado-Maldonado, Guillermo; Aguilar-Aguilar, Rogelio; Cabañas-Carranza, Guillermina

    2005-03-01

    Atactorhynchus duranguensis n. sp. (Acanthocephala: Atactorhynchinae) is described from the intestine of Cyprinodon meeki Miller, an endemic freshwater fish from a far-inland locality of Mexico. Diagnostic features include: body small, stout, ventrally curved; small cylindrical proboscis armed with 16 alternating vertical rows of four or five hooks; anterior two or three hooks conspicuous, stout and larger than other hooks, and have large, rod-shaped roots with a markedly and abruptly enlarged base; three posterior hooks of each row are smaller and rootless; single-walled proboscis receptacle; lemnisci equal in length, elongate and robust; and cement gland syncytial, larger than testis. The new species is smaller than A. verecundus Chandler, 1935, the only previously described species in the genus. The shape of the proboscis of the new species is strikingly different from that of A. verecundus, which is widest at the apex. Likewise, the greatest width of the trunk of the new species is in about the middle, differing from that of A. verecundus where the trunk is widest posteriorly. The new species also can be distinguished from A. verecundus because of its much smaller hook lengths and slightly smaller proboscis. In addition, the proportion of large apical proboscis hooks in relation to the small basal hooks is different: the basal hooks of A. verecundus are about half the size of the anterior hooks and but only about a quarter of the size in A. duranguensis. Unlike A. verecundus, the base of the roots are markedly and abruptly enlarged in the new species. Finally, the eggs of the new species are smaller (23-27 x 8-10 microm) than those of A. verecundus (27-30 x 12-13 microm).

  1. Comparative cytogenetic studies of Curimatidae (Pisces, Characiformes) from the middle Paraná River (Argentina).

    PubMed

    Brassesco, M S; Pastori, M C; Roncati, H A; Fenocchio, A S

    2004-06-30

    Almost all species of the Curimatidae family have a stable karyotype, with a diploid number of 54 metacentric (M) and submetacentric (SM) chromosomes, and one sole nucleolus organizer pair. This family has considerable specific diversity in Argentinean fluvial basins; however, no cytogenetic data are available. Eight species from the Paraná River (Argentina): Cyphocharax voga, C. spilotus, C. platanus, Steindachnerina brevipinna, S. conspersa, Curimatella dorsalis, Psectrogaster curviventris, and Potamorhina squamoralevis were analyzed cytogenetically. Chromosome preparations were obtained from direct samples and through cell culture, and they were processed for conventional, C- and nucleolar organizer region-banding. Six of the species exhibited the standard family karyotype, with 2n = 54 M-SM and fundamental number of chromosomes (FN) = 108, as well as variations in the chromosome formula, and in heterochromatic and nucleolar organizer regions. Though nucleolar organizer regions were located on only one chromosome pair, they varied in both carrier chromosomes and pairs involved. On the other hand, C. platanus showed a complement of 2n = 58 M-SM and subtelocentric with FN = 116, and P. squamoralevis presented 2n = 102, with some M-SM and a large number of acrocentric chromosomes. Even though the karyotype macrostructure appears to be conserved, the speciation process within the family has been accompanied by micro-structural rearrangements, as evidenced by pattern diversity in the heterochromatin and nucleolar organizer regions. Some changes in chromosome macrostructure have also occurred in this group, primarily in C. platanus and P. squamoralevis, in which there have been centric dissociations and inversions.

  2. Daily home opioid use in adults with sickle cell disease: The PiSCES project.

    PubMed

    Smith, Wally R; McClish, Donna K; Dahman, Bassam A; Levenson, James L; Aisiku, Imoigele P; de A Citero, Vanessa; Bovbjerg, Viktor E; Roberts, John D; Penberthy, Lynne T; Roseff, Susan D

    2015-01-01

    Although opioid prescribing in sickle cell disease (SCD) can be controversial, little is published about patterns of opioid use. To report on home opioid use among adults with SCD. Cohort study. Adults with SCD (n=219) who completed daily pain diaries for up to 6 months and had at least one home pain day. Use of long-acting or short-acting opioids, other analgesics, or adjuvants; the proportion of home days, home pain days, and home crisis days with opioid use; these two outcomes according to patient characteristics. Patients used opioids on 12,311 (78 percent) of 15,778 home pain days. Eighty-five patients (38.8 percent) used long-acting opioids with or without short-acting opioids and 103 (47.0 percent) used only short-acting opioids. Twenty-one (9.6 percent) patients used only non-opioid analgesics and 10 (4.6 percent) used no analgesics. Both pain intensity and pain frequency were higher among opioid users (analysis of variance [ANOVA], p<0.0001). Opioid users used hydroxyurea more often than nonusers, even when controlling for mean pain on pain days. Among all patients, significant relationships were found between any opioid use and somatic symptom burden, SCD stress, negative coping, and physical and mental quality of life (QOL); the relationship with SCD stress and physical QOL remained when controlled for mean pain. Among opioid users, similar associations were found between frequency of opioid use and some disease-related and psychosocial variables. In this adult SCD sample, opioids were used by the majority of patients. Pain was the overwhelming characteristic associated with use, but disease-related and psychosocial variables were also associated.

  3. A TEMPERATE REEF FISH TAUTOGLABRUS ADSPERSUS, (WALBAUM) AS A POTENTIAL MODEL SPECIES FOR LABORATORY STUDIES EVALUATING EFFECTS OF CHEMICAL EXPOSURE

    EPA Science Inventory

    In ecostoxicological testing, there are few studies that report on reproductive output (egg production) of marine or estuarine fish. Cunner (Tautogolabrus adspersus) were studied as a potential model species to evaluate the impact of pollutants with estrogenic activity on reprodu...

  4. Mitochondrial DNA variation in bull trout (Salvelinus confluentus) from northwestern North America: implications for zoogeography and conservation.

    PubMed

    Taylor, E B; Pollard, S; Louie, D

    1999-07-01

    Bull trout, Salvelinus confluentus (Salmonidae), are distributed in northwestern North America from Nevada to Yukon Territory, largely in interior drainages. The species is of conservation concern owing to declines in abundance, particularly in southern portions of its range. To investigate phylogenetic structure within bull trout that might form the basis for the delineation of major conservation units, we conducted a mitochondrial DNA (mtDNA) survey in bull trout from throughout its range. Restriction fragment length polymorphism (RFLP) analysis of four segments of the mtDNA genome with 11 restriction enzymes resolved 21 composite haplotypes that differed by an average of 0.5% in sequence. One group of haplotypes predominated in 'coastal' areas (west of the coastal mountain ranges) while another predominated in 'interior' regions (east of the coastal mountains). The two putative lineages differed by 0.8% in sequence and were also resolved by sequencing a portion of the ND1 gene in a representative of each RFLP haplotype. Significant variation existed within individual sample sites (12% of total variation) and among sites within major geographical regions (33%), but most variation (55%) was associated with differences between coastal and interior regions. We concluded that: (i) bull trout are subdivided into coastal and interior lineages; (ii) this subdivision reflects recent historical isolation in two refugia south of the Cordilleran ice sheet during the Pleistocene: the Chehalis and Columbia refugia; and (iii) most of the molecular variation resides at the interpopulation and inter-region levels. Conservation efforts, therefore, should focus on maintaining as many populations as possible across as many geographical regions as possible within both coastal and interior lineages.

  5. Identification of fish species after cooking by SDS-PAGE and urea IEF: a collaborative study.

    PubMed

    Etienne, M; Jérôme, M; Fleurence, J; Rehbein, H; Kündiger, R; Mendes, R; Costa, H; Pérez-Martín, R; Piñeiro-González, C; Craig, A; Mackie, I; Malmheden Yman, I; Ferm, M; Martínez, I; Jessen, F; Smelt, A; Luten, J

    2000-07-01

    A collaborative study, to validate the use of SDS-PAGE and urea IEF, for the identification of fish species after cooking has been performed by nine laboratories. By following optimized standard operation procedures, 10 commercially important species (Atlantic salmon, sea trout, rainbow trout, turbot, Alaska pollock, pollack, pink salmon, Arctic char, chum salmon, and New Zealand hake) had to be identified by comparison with 22 reference samples. Some differences in the recoveries of proteins from cooked fish flesh were noted between the urea and the SDS extraction procedures used. Generally, the urea extraction procedure appears to be less efficient than the SDS extraction for protein solubilization. Except for some species belonging to the Salmonidae family (Salmo, Oncorhynchus), both of the analytical techniques tested (urea IEF, SDS-PAGE) enabled identification of the species of the samples to be established. With urea IEF, two laboratories could not differentiate Salmo salar from Salmo trutta. The same difficulties were noted for differentiation between Oncorhynchus gorbuscha and Oncorhynchus keta samples. With SDS-PAGE, three laboratories had some difficulties in identifying the S. trutta samples. However, in the contrast with the previous technique, SDS-PAGE allows the characterization of most of the Oncorhynchus species tested. Only Oncorhynchus mykiss was not clearly recognized by one laboratory. Therefore, SDS-PAGE (Excel gel homogeneous 15%) appears to be better for the identification, after cooking, of fish such as the tuna and salmon species which are characterized by neutral and basic protein bands, and urea IEF (CleanGel) is better for the gadoid species, which are characterized by acid protein bands (parvalbumins). Nevertheless, in contentious cases it is preferable to use both analytical methods.

  6. Morphological and molecular confirmation of Myxobolus cerebralis myxospores infecting wild‑caught and cultured trout in North Carolina (SE USA).

    PubMed

    Ruiz, Carlos F; Rash, Jacob M; Arias, Cova R; Besler, Doug A; Orélis-Ribeiro, Raphael; Womble, Matthew R; Roberts, Jackson R; Warren, Micah B; Ray, Candis L; Lafrentz, Stacey; Bullard, Stephen A

    2017-11-21

    We used microscopy and molecular biology to provide the first documentation of infections of Myxobolus cerebralis (Myxozoa: Myxobolidae), the etiological agent of whirling disease, in trout (Salmonidae) from North Carolina (USA) river basins. A total of 1085 rainbow trout Oncorhynchus mykiss, 696 brown trout Salmo trutta, and 319 brook trout Salvelinus fontinalis from 43 localities across 9 river basins were screened. Myxospores were observed microscopically in pepsin-trypsin digested heads of rainbow and brown trout from the Watauga River Basin. Those infections were confirmed using the prescribed nested polymerase chain reaction (PCR; 18S rDNA), which also detected infections in rainbow, brown, and brook trout from the French Broad River Basin and the Yadkin Pee-Dee River Basin. Myxospores were 9.0-10.0 µm (mean ± SD = 9.6 ± 0.4; N = 119) long, 8.0-10.0 µm (8.8 ± 0.6; 104) wide, and 6.0-7.5 µm (6.9 ± 0.5; 15) thick and had polar capsules 4.0-6.0 µm (5.0 ± 0.5; 104) long, 2.5-3.5 µm (3.1 ± 0.3; 104) wide, and with 5 or 6 polar filament coils. Myxospores from these hosts and rivers were morphologically indistinguishable and molecularly identical, indicating conspecificity, and the resulting 18S rDNA and ITS-1 sequences derived from these myxospores were 99.5-100% and 99.3-99.8% similar, respectively, to published GenBank sequences ascribed to M. cerebralis. This report comprises the first taxonomic circumscription and molecular confirmation of M. cerebralis in the southeastern USA south of Virginia.

  7. Salmonid Chromosome Evolution as Revealed by a Novel Method for Comparing RADseq Linkage Maps

    PubMed Central

    Gosselin, Thierry; Normandeau, Eric; Lamothe, Manuel; Isabel, Nathalie; Audet, Céline; Bernatchez, Louis

    2016-01-01

    Whole genome duplication (WGD) can provide material for evolutionary innovation. Family Salmonidae is ideal for studying the effects of WGD as the ancestral salmonid underwent WGD relatively recently, ∼65 Ma, then rediploidized and diversified. Extensive synteny between homologous chromosome arms occurs in extant salmonids, but each species has both conserved and unique chromosome arm fusions and fissions. Assembly of large, outbred eukaryotic genomes can be difficult, but structural rearrangements within such taxa can be investigated using linkage maps. RAD sequencing provides unprecedented ability to generate high-density linkage maps for nonmodel species, but can result in low numbers of homologous markers between species due to phylogenetic distance or differences in library preparation. Here, we generate a high-density linkage map (3,826 markers) for the Salvelinus genera (Brook Charr S. fontinalis), and then identify corresponding chromosome arms among the other available salmonid high-density linkage maps, including six species of Oncorhynchus, and one species for each of Salmo, Coregonus, and the nonduplicated sister group for the salmonids, Northern Pike Esox lucius for identifying post-duplicated homeologs. To facilitate this process, we developed MapComp to identify identical and proximate (i.e. nearby) markers between linkage maps using a reference genome of a related species as an intermediate, increasing the number of comparable markers between linkage maps by 5-fold. This enabled a characterization of the most likely history of retained chromosomal rearrangements post-WGD, and several conserved chromosomal inversions. Analyses of RADseq-based linkage maps from other taxa will also benefit from MapComp, available at: https://github.com/enormandeau/mapcomp/ PMID:28173098

  8. Sequencing and Characterisation of an Extensive Atlantic Salmon (Salmo salar L.) MicroRNA Repertoire

    PubMed Central

    Bekaert, Michaël; Lowe, Natalie R.; Bishop, Stephen C.; Bron, James E.; Taggart, John B.; Houston, Ross D.

    2013-01-01

    Atlantic salmon (Salmo salar L.), a member of the family Salmonidae, is a totemic species of ecological and cultural significance that is also economically important in terms of both sports fisheries and aquaculture. These factors have promoted the continuous development of genomic resources for this species, furthering both fundamental and applied research. MicroRNAs (miRNA) are small endogenous non-coding RNA molecules that control spatial and temporal expression of targeted genes through post-transcriptional regulation. While miRNA have been characterised in detail for many other species, this is not yet the case for Atlantic salmon. To identify miRNAs from Atlantic salmon, we constructed whole fish miRNA libraries for 18 individual juveniles (fry, four months post hatch) and characterised them by Illumina high-throughput sequencing (total of 354,505,167 paired-ended reads). We report an extensive and partly novel repertoire of miRNA sequences, comprising 888 miRNA genes (547 unique mature miRNA sequences), quantify their expression levels in basal conditions, examine their homology to miRNAs from other species and identify their predicted target genes. We also identify the location and putative copy number of the miRNA genes in the draft Atlantic salmon reference genome sequence. The Atlantic salmon miRNAs experimentally identified in this study provide a robust large-scale resource for functional genome research in salmonids. There is an opportunity to explore the evolution of salmonid miRNAs following the relatively recent whole genome duplication event in salmonid species and to investigate the role of miRNAs in the regulation of gene expression in particular their contribution to variation in economically and ecologically important traits. PMID:23922936

  9. Identification and Migration of Primordial Germ Cells in Atlantic Salmon, Salmo salar: Characterization of Vasa, Dead End, and Lymphocyte Antigen 75 Genes

    PubMed Central

    Nagasawa, Kazue; Fernandes, Jorge MO; Yoshizaki, Goro; Miwa, Misako; Babiak, Igor

    2013-01-01

    No information exists on the identification of primordial germ cells (PGCs) in the super-order Protacanthopterygii, which includes the Salmonidae family and Atlantic salmon (Salmo salar L.), one of the most commercially important aquatic animals worldwide. In order to identify salmon PGCs, we cloned the full-length cDNA of vasa, dead end (dnd), and lymphocyte antigen 75 (ly75/CD205) genes as germ cell marker candidates, and analyzed their expression patterns in both adult and embryonic stages of Atlantic salmon. Semi-quantitative RT-PCR results showed that salmon vasa and dnd were specifically expressed in testis and ovary, and vasa, dnd, and ly75 mRNA were maternally deposited in the egg. vasa mRNA was consistently detected throughout embryogenesis while dnd and ly75 mRNA were gradually degraded during cleavages. In situ analysis revealed the localization of vasa and dnd mRNA and Ly75 protein in PGCs of hatched larvae. Whole-mount in situ hybridization detected vasa mRNA during embryogenesis, showing a distribution pattern somewhat different to that of zebrafish; specifically, at mid-blastula stage, vasa-expressing cells were randomly distributed at the central part of blastodisc, and then they migrated to the presumptive region of embryonic shield. Therefore, the typical vasa localization pattern of four clusters during blastulation, as found in zebrafish, was not present in Atlantic salmon. In addition, salmon PGCs could be specifically labeled with a green fluorescence protein (GFP) using gfp-rt-vasa 3′-UTR RNA microinjection for further applications. These findings may assist in understanding PGC development not only in Atlantic salmon but also in other salmonids. PMID:23239145

  10. An Integrated Ecological Modeling System for Assessing ...

    EPA Pesticide Factsheets

    We demonstrate a novel, spatially explicit assessment of the current condition of aquatic ecosystem services, with limited sensitivity analysis for the atmospheric contaminant mercury. The Integrated Ecological Modeling System (IEMS) forecasts water quality and quantity, habitat suitability for aquatic biota, fish biomasses, population densities, productivities, and contamination by methylmercury across headwater watersheds. We applied this IEMS to the Coal River Basin (CRB), West Virginia (USA), an 8-digit hydrologic unit watershed, by simulating a network of 97 stream segments using the SWAT watershed model, a watershed mercury loading model, the WASP water quality model, the PiSCES fish community estimation model, a fish habitat suitability model, the BASS fish community and bioaccumulation model, and an ecoservices post-processer. Model application was facilitated by automated data retrieval and model setup and updated model wrappers and interfaces for data transfers between these models from a prior study. This companion study evaluates baseline predictions of ecoservices provided for 1990 – 2010 for the population of streams in the CRB and serves as a foundation for future model development. Published in the journal, Ecological Modeling. Highlights: • Demonstrate a spatially-explicit IEMS for multiple scales. • Design a flexible IEMS for

  11. Is Cold Gas Removed from Galaxies in Filaments and Tendrils?

    NASA Astrophysics Data System (ADS)

    Crone Odekon, Mary; Shah, Ebrahim; Hall, Ryan; Cane, Thomas; Maloney, Erin; Hallenbeck, Gregory; Haynes, Martha P.; Koopmann, Rebecca A.; APPSS Team, Undergraduate ALFALFA Team, ALFALFA Team

    2018-01-01

    We present results from an ALFALFA HI study to examine whether the cold gas reservoirs of galaxies are inhibited or enhanced in large-scale filaments, and we discuss implications for follow-up work using the new Arecibo Pisces-Perseus Supercluster survey (APPSS). From the ALFALFA survey, we find that the HI deficiency for galaxies in the range 10^8.5-10^10.5 solar masses decreases with distance from the filament spine, suggesting that galaxies are cut off from cold gas, possibly by heating or by dynamical detachment from the smaller-scale cosmic web. This contrasts with previous results for larger galaxies in the HI Parkes All-Sky Survey. We discuss the prospects for elucidating this apparent dependence on galaxy mass with data from the APPSS, which will extend to smaller masses. We also find that the most gas-rich galaxies at fixed local density and stellar mass are those in small, correlated ``tendril” structures within voids: although galaxies in tendrils are in significantly denser environments, on average, than galaxies in voids, they are not redder or more HI deficient. This work has been supported by NSF grants AST-1211005 and AST-1637339.

  12. SEAPODYM-LTL: a parsimonious zooplankton dynamic biomass model

    NASA Astrophysics Data System (ADS)

    Conchon, Anna; Lehodey, Patrick; Gehlen, Marion; Titaud, Olivier; Senina, Inna; Séférian, Roland

    2017-04-01

    Mesozooplankton organisms are of critical importance for the understanding of early life history of most fish stocks, as well as the nutrient cycles in the ocean. Ongoing climate change and the need for improved approaches to the management of living marine resources has driven recent advances in zooplankton modelling. The classical modeling approach tends to describe the whole biogeochemical and plankton cycle with increasing complexity. We propose here a different and parsimonious zooplankton dynamic biomass model (SEAPODYM-LTL) that is cost efficient and can be advantageously coupled with primary production estimated either from satellite derived ocean color data or biogeochemical models. In addition, the adjoint code of the model is developed allowing a robust optimization approach for estimating the few parameters of the model. In this study, we run the first optimization experiments using a global database of climatological zooplankton biomass data and we make a comparative analysis to assess the importance of resolution and primary production inputs on model fit to observations. We also compare SEAPODYM-LTL outputs to those produced by a more complex biogeochemical model (PISCES) but sharing the same physical forcings.

  13. Cleaning HI Spectra Contaminated by GPS RFI

    NASA Astrophysics Data System (ADS)

    Sylvia, Kamin; Hallenbeck, Gregory L.; Undergraduate ALFALFA Team

    2016-01-01

    The NUDET systems aboard GPS satellites utilize radio waves to communicate information regarding surface nuclear events. The system tests appear in spectra as RFI (radio frequency interference) at 1381MHz, which contaminates observations of extragalactic HI (atomic hydrogen) signals at 50-150 Mpc. Test durations last roughly 20-120 seconds and can occur upwards of 30 times during a single night of observing. The disruption essentially renders the corresponding HI spectra useless.We present a method that automatically removes RFI in HI spectra caused by these tests. By capitalizing on the GPS system's short test durations and predictable frequency appearance we are able to devise a method of identifying times containing compromised data records. By reevaluating the remaining data, we are able to recover clean spectra while sacrificing little in terms of sensitivity to extragalactic signals. This method has been tested on 500+ spectra taken by the Undergraduate ALFALFA Team (UAT), in which it successfully identified and removed all sources of GPS RFI. It will also be used to eliminate RFI in the upcoming Arecibo Pisces-Perseus Supercluster Survey (APPSS).This work has been supported by NSF grant AST-1211005.

  14. Interannual variations in the hatching pattern, larval growth and otolith size of a sand-dwelling fish from central Chile

    NASA Astrophysics Data System (ADS)

    Rodríguez-Valentino, Camilo; Landaeta, Mauricio F.; Castillo-Hidalgo, Gissella; Bustos, Claudia A.; Plaza, Guido; Ojeda, F. Patricio

    2015-09-01

    The interannual variation (2010-2013) of larval abundance, growth and hatching patterns of the Chilean sand stargazer Sindoscopus australis (Pisces: Dactyloscopidae) was investigated through otolith microstructure analysis from samples collected nearshore (<500 m from shore) during austral late winter-early spring off El Quisco bay, central Chile. In the studied period, the abundance of larval stages in the plankton samples varied from 2.2 to 259.3 ind. 1000 m-3; larval abundance was similar between 2010 and 2011, and between 2012 and 2013, but increased significantly from 2011 to 2012. The estimated growth rates increased twice, from 0.09 to 0.21 mm day-1, between 2011 and 2013. Additionally, otolith size (radius, perimeter and area), related to body length of larvae, significantly decreased from 2010 to 2012, but increases significantly in 2013. Although the mean values of microincrement widths of sagitta otoliths were similar between 2010 and 2011 (around 0.6-0.7 μm), the interindividual variability increases in 2011 and 2013, suggesting large environmental variability experienced by larvae during these years. Finally, the hatching pattern of S. australis changed significantly from semi-lunar to lunar cycle after 2012.

  15. Controlling factors of the seasonal variability of productivity in the southern Humboldt Current System (30-40°S): A biophysical modeling approach

    NASA Astrophysics Data System (ADS)

    Vergara, Odette A.; Echevín, Vincent; Sepúlveda, Héctor Hito; Quiñones, Renato A.

    2017-09-01

    The spatial and seasonal variability of nutrients and chlorophyll in the southern Humboldt Current System were assessed using a high-resolution regional ocean circulation model (ROMS) coupled to a biogeochemical model (Pelagic-Interactions Scheme for carbon and Ecosystem Studies; PISCES). The simulated nutrients and chlorophyll fields were validated using satellite and in situ observations at a continental shelf time-series station. The annual cycles of modeled chlorophyll and nutrients were consistent with the highest values observed in spring and summer, which is in agreement with enhanced upwelling observations. Co-limitation of phytoplankton growth by nutrients and light was analyzed for diatoms, the dominant phytoplankton group in the simulations. The results showed that co-limitation, near the coast, was governed in autumn and winter by light, and by silicate in spring and summer, whereas other nutrients were limiting offshore between January and April. Nutrient transport in the surface layer was analyzed. Vertical advection reflected areas with higher coastal upwelling, and was partly offset by horizontal processes related to eddy-induced transport from the nearshore to the open ocean. Vertical mixing was shown to play a key role in replenishing the surface layer with nutrients.

  16. Air toxics provisions of the Clean Air Act: Potential impacts on energy

    DOE Office of Scientific and Technical Information (OSTI.GOV)

    Hootman, H.A.; Vernet, J.E.

    1991-11-01

    This report provides an overview of the provisions of the Clean Air Act and its Amendments of 1990 that identify hazardous air pollutant (HAP) emissions and addresses their regulation by the US Environmental Protection Agency (EPA). It defines the major energy sector sources of these HAPs that would be affected by the regulations. Attention is focused on regulations that would cover coke oven emissions; chromium emission from industrial cooling towers and the electroplating process; HAP emissions from tank vessels, asbestos-related activities, organic solvent use, and ethylene oxide sterilization; and emissions of air toxics from municipal waste combustors. The possible implicationsmore » of Title III regulations for the coal, natural gas, petroleum, uranium, and electric utility industries are examined. The report discusses five major databases of HAP emissions: (1) TRI (EPA's Toxic Release Inventory); (2) PISCES (Power Plant Integrated Systems: Chemical Emissions Studies developed by the Electric Power Research Institute); (3) 1985 Emissions Inventory on volatile organic compounds (used for the National Acid Precipitation Assessment Program); (4) Particulate Matter Species Manual (EPA); and (5) Toxics Emission Inventory (National Aeronautics and Space Administration). It also offers information on emission control technologies for municipal waste combustors.« less

  17. Air toxics provisions of the Clean Air Act: Potential impacts on energy

    DOE Office of Scientific and Technical Information (OSTI.GOV)

    Hootman, H.A.; Vernet, J.E.

    1991-11-01

    This report provides an overview of the provisions of the Clean Air Act and its Amendments of 1990 that identify hazardous air pollutant (HAP) emissions and addresses their regulation by the US Environmental Protection Agency (EPA). It defines the major energy sector sources of these HAPs that would be affected by the regulations. Attention is focused on regulations that would cover coke oven emissions; chromium emission from industrial cooling towers and the electroplating process; HAP emissions from tank vessels, asbestos-related activities, organic solvent use, and ethylene oxide sterilization; and emissions of air toxics from municipal waste combustors. The possible implicationsmore » of Title III regulations for the coal, natural gas, petroleum, uranium, and electric utility industries are examined. The report discusses five major databases of HAP emissions: (1) TRI (EPA`s Toxic Release Inventory); (2) PISCES (Power Plant Integrated Systems: Chemical Emissions Studies developed by the Electric Power Research Institute); (3) 1985 Emissions Inventory on volatile organic compounds (used for the National Acid Precipitation Assessment Program); (4) Particulate Matter Species Manual (EPA); and (5) Toxics Emission Inventory (National Aeronautics and Space Administration). It also offers information on emission control technologies for municipal waste combustors.« less

  18. The IFS for WFIRST CGI: Science Requirements to Design

    NASA Astrophysics Data System (ADS)

    Groff, Tyler; Gong, Qian; Mandell, Avi M.; Zimmerman, Neil; Rizzo, Maxime; McElwain, Michael; harvey, david; Saxena, Prabal; cady, eric; mejia prada, camilo

    2018-01-01

    Direct Imaging of exoplanets using a coronagraph has become a major field of research both on the ground and in space. Key to the science of direct imaging is the spectroscopic capabilities of the instrument, our ability to extract spectra, and measure the abundance of molecular species such as Methane. To take these spectra, the WFIRST coronagraph instrument (CGI) uses an integral field spectrograph (IFS), which encodes the spectrum into a two-dimensional image on the detector. This results in more efficient detection and characterization of targets, and the spectral information is critical to achieving detection limits below the speckle floor of the imager. The CGI IFS operates in three 18% bands spanning 600nm to 970nm at a nominal spectral resolution of R50. We present the current science and engineering requirements for the IFS design, the instrument design, anticipated performance, and how the calibration is integrated into the focal plane wavefront control algorithms. We also highlight the role of the Prototype Imaging Spectrograph for Coronagraphic Exoplanet Studies (PISCES) at the JPL High Contrast Imaging Testbed to demonstrate performance and validate calibration methodologies for the flight instrument.

  19. HOW THE FIRST STARS SHAPED THE FAINTEST GAS-DOMINATED DWARF GALAXIES

    DOE Office of Scientific and Technical Information (OSTI.GOV)

    Verbeke, R.; Vandenbroucke, B.; Rijcke, S. De, E-mail: robbert.verbeke@UGent.be

    2015-12-20

    Low-mass dwarf galaxies are very sensitive test-beds for theories of cosmic structure formation since their weak gravitational fields allow the effects of the relevant physical processes to clearly stand out. Up to now, no unified account has existed of the sometimes seemingly conflicting properties of the faintest isolated dwarfs in and around the Local Group, such as Leo T and the recently discovered Leo P and Pisces A systems. Using new numerical simulations, we show that this serious challenge to our understanding of galaxy formation can be effectively resolved by taking into account the regulating influence of the ultraviolet radiation of themore » first population of stars on a dwarf’s star formation rate while otherwise staying within the standard cosmological paradigm for structure formation. These simulations produce faint, gas-dominated, star-forming dwarf galaxies that lie on the baryonic Tully–Fisher relation and that successfully reproduce a broad range of chemical, kinematical, and structural observables of real late-type dwarf galaxies. Furthermore, we stress the importance of obtaining properties of simulated galaxies in a manner as close as possible to the typically employed observational techniques.« less

  20. Ecotoxicological analysis during the removal of carbofuran in fungal bioaugmented matrices.

    PubMed

    Ruíz-Hidalgo, Karla; Masís-Mora, Mario; Barbieri, Edison; Carazo-Rojas, Elizabeth; Rodríguez-Rodríguez, Carlos E

    2016-02-01

    Biomixtures are used for the removal of pesticides from agricultural wastewater. As biomixtures employ high content of lignocellulosic substrates, their bioaugmentation with ligninolytic fungi represents a novel approach for their enhancement. Nonetheless, the decrease in the concentration of the pesticide may result in sublethal concentrations that still affect ecosystems. Two matrices, a microcosm of rice husk (lignocellulosic substrate) bioaugmented with the fungus Trametes versicolor and a biomixture that contained fungally colonized rice husk were used in the degradation of the insecticide/nematicide carbofuran (CFN). Elutriates simulating lixiviates from these matrices were used to assay the ecotoxicological effects at sublethal level over Daphnia magna (Straus) and the fish Oreochromis aureus (Steindachner) and Oncorhynchus mykiss (Walbaum). Elutriates obtained after 30 d of treatment in the rice husk microcosms at dilutions over 2.5% increased the offspring of D. magna as a trade-off stress response, and produced mortality of neonates at dilutions over 5%. Elutriates (dilution 1:200) obtained during a 30 d period did not produce alterations on the oxygen consumption and ammonium excretion of O. mykiss, however these physiological parameters were affected in O. aureus at every time point of treatment, irrespective of the decrease in CFN concentration. When the fungally colonized rice husk was used to prepare a biomixture, where more accelerated degradation is expected, similar alterations on the responses by O. aureus were achieved. Results suggest that despite the good removal of the pesticide, it is necessary to optimize biomixtures to minimize their residual toxicity and potential chronic effects on aquatic life. Copyright © 2015 Elsevier Ltd. All rights reserved.

  1. Transcriptomics of environmental acclimatization and survival in wild adult Pacific sockeye salmon (Oncorhynchus nerka) during spawning migration.

    PubMed

    Evans, Tyler G; Hammill, Edd; Kaukinen, Karia; Schulze, Angela D; Patterson, David A; English, Karl K; Curtis, Janelle M R; Miller, Kristina M

    2011-11-01

    Environmental shifts accompanying salmon spawning migrations from ocean feeding grounds to natal freshwater streams can be severe, with the underlying stress often cited as a cause of increased mortality. Here, a salmonid microarray was used to characterize changes in gene expression occurring between ocean and river habitats in gill and liver tissues of wild migrating sockeye salmon (Oncorhynchus nerka Walbaum) returning to spawn in the Fraser River, British Columbia, Canada. Expression profiles indicate that the transcriptome of migrating salmon is strongly affected by shifting abiotic and biotic conditions encountered along migration routes. Conspicuous shifts in gene expression associated with changing salinity, temperature, pathogen exposure and dissolved oxygen indicate that these environmental variables most strongly impact physiology during spawning migrations. Notably, transcriptional changes related to osmoregulation were largely preparatory and occurred well before salmon encountered freshwater. In the river environment, differential expression of genes linked with elevated temperatures indicated that thermal regimes within the Fraser River are approaching tolerance limits for adult salmon. To empirically correlate gene expression with survival, biopsy sampling of gill tissue and transcriptomic profiling were combined with telemetry. Many genes correlated with environmental variables were differentially expressed between premature mortalities and successful migrants. Parametric survival analyses demonstrated a broad-scale transcriptional regulator, cofactor required for Sp1 transcriptional activation (CRSP), to be significantly predictive of survival. As the environmental characteristics of salmon habitats continue to change, establishing how current environmental conditions influence salmon physiology under natural conditions is critical to conserving this ecologically and economically important fish species. © 2011 Blackwell Publishing Ltd.

  2. Effects of Different Levels of Pomegranate Seed Oil on Some Blood Parameters and Disease Resistance Against Yersinia ruckeri in Rainbow Trout

    PubMed Central

    Acar, Ümit; Parrino, Vincenzo; Kesbiç, Osman Sabri; Lo Paro, Giuseppe; Saoca, Concetta; Abbate, Francesco; Yılmaz, Sevdan; Fazio, Francesco

    2018-01-01

    This study is aimed to assess the effects of pomegranate seed oil (PSO) supplementation on growth performance, some hematological, biochemical and immunological parameters, and disease resistance against Yersinia ruckeri in cultured rainbow trout Oncorhynchus mykiss (Walbaum, 1792). 240 fish in total were randomly assigned into four triplicate groups (20 fish/per aquarium) corresponding to four dietary treatments: control (PSO0; no addition of PSO), 0.5% (PSO5), 1.00% (PSO10), and 2.00% (PSO20) of PSO, respectively. After the 60 day-feeding trial, fish blood samples were collected and compared. Statistical analysis (one-way ANOVA) showed a significant (P < 0.05) effect of PSO on red blood cell count, hemoglobin concentration, mean corpuscular volume, mean corpuscular hemoglobin concentration, cholesterol, aspartate aminotransferase, alanine aminotransferase, and alkaline phosphatase parameters in PSO5 and PSO10 with regard to control. Moreover, a pronounced (P < 0.05) increased in weight gain, growth and feed conversion was found in fish fed with PSO supplemented diets. After the feeding trial, fish were challenged with Y. ruckeri and survival recorded for 20 days. Cumulative survival was 45.10% in fish fed with the control diet, whereas in fish fed with PSO5, PSO10, and PSO20 supplemented diets, survival was 58.82, 56.86, and 56.86%, respectively. In conclusion, dietary administration of PSO induced a reduction in mortality of rainbow trout infected with Y. ruckeri, intercalary significant differences occurred on growth performance and some blood values among treated groups. These positive effects of PSO could be considered for new applications in aquaculture. PMID:29875694

  3. The Olfactory Transcriptome and Progression of Sexual Maturation in Homing Chum Salmon Oncorhynchus keta.

    PubMed

    Palstra, Arjan P; Fukaya, Kosuke; Chiba, Hiroaki; Dirks, Ron P; Planas, Josep V; Ueda, Hiroshi

    2015-01-01

    Reproductive homing migration of salmonids requires accurate interaction between the reception of external olfactory cues for navigation to the spawning grounds and the regulation of sexual maturation processes. This study aimed at providing insights into the hypothesized functional link between olfactory sensing of the spawning ground and final sexual maturation. We have therefore assessed the presence and expression levels of olfactory genes by RNA sequencing (RNAseq) of the olfactory rosettes in homing chum salmon Oncorhynchus keta Walbaum from the coastal sea to 75 km upstream the rivers at the pre-spawning ground. The progression of sexual maturation along the brain-pituitary-gonadal axis was assessed through determination of plasma steroid levels by time-resolved fluoroimmunoassays (TR-FIA), pituitary gonadotropin subunit expression and salmon gonadotropin-releasing hormone (sgnrh) expression in the brain by quantitative real-time PCR. RNAseq revealed the expression of 75 known and 27 unknown salmonid olfactory genes of which 13 genes were differentially expressed between fish from the pre-spawning area and from the coastal area, suggesting an important role of these genes in homing. A clear progression towards final maturation was characterised by higher plasma 17α,20β-dihydroxy-4-pregnen-3-one (DHP) levels, increased pituitary luteinizing hormone β subunit (lhβ) expression and sgnrh expression in the post brain, and lower plasma testosterone (T) and 17β-estradiol (E2) levels. Olfactomedins and ependymin are candidates among the differentially expressed genes that may connect olfactory reception to the expression of sgnrh to regulate final maturation.

  4. The Olfactory Transcriptome and Progression of Sexual Maturation in Homing Chum Salmon Oncorhynchus keta

    PubMed Central

    Palstra, Arjan P.; Fukaya, Kosuke; Chiba, Hiroaki; Dirks, Ron P.; Planas, Josep V.; Ueda, Hiroshi

    2015-01-01

    Reproductive homing migration of salmonids requires accurate interaction between the reception of external olfactory cues for navigation to the spawning grounds and the regulation of sexual maturation processes. This study aimed at providing insights into the hypothesized functional link between olfactory sensing of the spawning ground and final sexual maturation. We have therefore assessed the presence and expression levels of olfactory genes by RNA sequencing (RNAseq) of the olfactory rosettes in homing chum salmon Oncorhynchus keta Walbaum from the coastal sea to 75 km upstream the rivers at the pre-spawning ground. The progression of sexual maturation along the brain-pituitary-gonadal axis was assessed through determination of plasma steroid levels by time-resolved fluoroimmunoassays (TR-FIA), pituitary gonadotropin subunit expression and salmon gonadotropin-releasing hormone (sgnrh) expression in the brain by quantitative real-time PCR. RNAseq revealed the expression of 75 known and 27 unknown salmonid olfactory genes of which 13 genes were differentially expressed between fish from the pre-spawning area and from the coastal area, suggesting an important role of these genes in homing. A clear progression towards final maturation was characterised by higher plasma 17α,20β-dihydroxy-4-pregnen-3-one (DHP) levels, increased pituitary luteinizing hormone β subunit (lhβ) expression and sgnrh expression in the post brain, and lower plasma testosterone (T) and 17β-estradiol (E2) levels. Olfactomedins and ependymin are candidates among the differentially expressed genes that may connect olfactory reception to the expression of sgnrh to regulate final maturation. PMID:26397372

  5. A statistical analysis of the distribution of a larval nematode (Anisakis sp.) in the musculature of chum salmon (Oncorhynchus keta - Walbaum)

    USGS Publications Warehouse

    Novotny, A.J.

    1960-01-01

    The one factor which probably contributes the greatest effect on distributional patterns of Anisakis within chum salmon musculature is the total intensity of infection (or population density of Anisakis) in each fish.

  6. Effect of dietary α-tocopherol + ascorbic acid, selenium, and iron on oxidative stress in sub-yearling Chinook salmon (Oncorhynchus tshawytscha Walbaum)

    USGS Publications Warehouse

    Welker, T.L.; Congleton, J.L.

    2009-01-01

    A three-variable central composite design coupled with surface-response analysis was used to examine the effects of dietary ??-tocopherol + ascorbic acid (TOCAA), selenium (Se), and iron (Fe) on indices of oxidative stress in juvenile spring Chinook salmon. Each dietary factor was tested at five levels for a total of fifteen dietary combinations (diets). Oxidative damage in liver and kidney (lipid peroxidation, protein carbonyls) and erythrocytes (erythrocyte resistance to peroxidative lysis, ERPL) was determined after feeding experimental diets for 16 (early December) and 28 (early March) weeks. Only TOCAA influenced oxidative stress in this study, with most measures of oxidative damage decreasing (liver lipid peroxidation in December and March; ERPL in December; liver protein carbonyl in March) with increasing levels of TOCAA. We also observed a TOCAA-stimulated increase in susceptibility of erythrocytes to peroxidative lysis in March at the highest levels of TOCAA. The data suggest that under most circumstances a progressive decrease in oxidative stress occurs as dietary TOCAA increases, but higher TOCAA concentrations can stimulate oxidative damage in some situations. Higher levels of TOCAA in the diet were required in March than in December to achieve comparable levels of protection against oxidative damage, which may have been due to physiological changes associated with the parr-smolt transformation. Erythrocytes appeared to be more sensitive to variation in dietary levels of TOCAA than liver and kidney tissues. Using the March ERPL assay results as a baseline, a TOCAA level of approximately 350-600 mg/kg diet would provide adequate protection against lipid peroxidation under most circumstances in juvenile Chinook salmon. ?? 2008 The Authors.

  7. Vertical transmission of infectious haematopoietic necrosis virus in sockeye salmon, Oncorhynchus nerka (Walbaum): isolation of virus from dead eggs and fry

    USGS Publications Warehouse

    Mulcahy, D.; Pascho, R.J.

    1985-01-01

    The control of epizootics of infectious haematopoietic necrosis (IIHN) virus in salmonid fishes is presently based on examination and certification of adult brood fish to prevent the introduction of virus-infected eggs into hatcheries (Canadian Fisherics and Marine Service 1976; McDaniel 1979). This strategy is based on the assumption that the virus is vertically transmitted in association with the gametes. However, evidence for vertical transmission of lHN virus is circumstantial, based mostly on the appearance of the disease outside the enzootic area (the west coast of North America) in fish hatched from eggs obtained from within that area (Plumb 1972; Holway & Smith 1973; Wolf, Quimby, Pettijohn & Landolt 1973, Sano, Nishimura, Okamoto, Yamazaki, Hanada & Watanabe 1977. Carlisle, Schat & Elston 1979). An indirect demonstration of vertical transmission was made by placing known virus-free fish in the water above and below raceways containing fish that suffered an IEEN epizootic in an cffort to climinate waterborne virus as a source of infection (Wingficid & Chan 1970). The fish placed below the raceway developed IHN, due to waterborne virus released from the affected fish in the raceway, but the fish placed above the raceway failed to develop IHN. These results suggested that the source of infection of the fish in the raceway was not the water supply, although it is possible that the virus was no longer present in the water supply at the time the sentinel fish were exposed to the water.

  8. Ingestion of microplastics and natural fibres in Sardina pilchardus (Walbaum, 1792) and Engraulis encrasicolus (Linnaeus, 1758) along the Spanish Mediterranean coast.

    PubMed

    Compa, Montserrat; Ventero, Ana; Iglesias, Magdalena; Deudero, Salud

    2018-03-01

    The ingestion of microplastics and natural fibres (<5 mm) was assessed for two commercial fish species in the western Mediterranean Sea: Sardina pilchardus and Engraulis encrasicolus. Gastrointestinal tracts from 210 individuals from 14 stations were examined with 14.28-15.24% of the small pelagic fish S. pilchardus and E. encrasicolus having ingested microplastics and natural fibres. A latitudinal increase in condition index (Fulton's K) of S. pilchardus gave an indication that larger individuals with better physical condition are less likely to ingest microplastics and natural fibres. Fibres were the most frequent particle type (83%) and Fourier Transform Infrared spectroscopy (FT-IR) analysis indicated polyethylene terephthalate was the most common microplastics material (30%). Results from this study show that both microplastics and natural fibres of anthropogenic origin are common throughout the pelagic environment along the Spanish Mediterranean coast. Copyright © 2018 Elsevier Ltd. All rights reserved.

  9. Oxidative stress enzyme and histopathological lesions in Colossoma macropomum (pisces, ariidae) for environmental impact assessment

    NASA Astrophysics Data System (ADS)

    Andrade, Ticianne de Sousa de Oliveira Mota; Sousa, Debora Batista Pinheiro; Dantas, Janaina Gomes; Castro, Jonatas da Silva; Neta, Raimunda Nonata Fortes Carvalho

    2015-12-01

    This study used oxidative stress enzyme (Glutathione S-Transferase and Catalase), histopathological lesions (Branchial lesions) and biometric data in the freshwater fish tambaqui, Colossoma macropomum, to assess environmental impacts in an Environmental Protection Area at São Luis, Brazil. Fish were sampled from two locations (A1 = contaminated area and A2 = reference site) within the protected area on four occasions. The activity of catalase (CAT) and glutathione S-transferase (GST) in C. macropomum was compared with biometric data and histopathological lesions. Results have shown that biometric data decreased significantly in fish (p<0.05) at the contaminated site. The activity of CAT was higher in fish specifically caught in A1. A significant difference was observed in the GST activity in the liver of C. macropomum when comparing fish from the contaminated site and those from the reference site (p<0.05).

  10. Relative profile analysis of molecular markers for identification and genetic discrimination of loaches (Pisces, Nemacheilidae).

    PubMed

    Patil, Tejas Suresh; Tamboli, Asif Shabodin; Patil, Swapnil Mahadeo; Bhosale, Amrut Ravindra; Govindwar, Sanjay Prabhu; Muley, Dipak Vishwanathrao

    2016-01-01

    Genus Nemacheilus, Nemachilichthys and Schistura belong to the family Nemacheilidae of the order Cypriniformes. The present investigation was undertaken to observe genetic diversity, phylogenetic relationship and to develop a molecular-based tool for taxonomic identification. For this purpose, four different types of molecular markers were utilized in which 29 random amplified polymorphic DNA (RAPD), 25 inter-simple sequence repeat (ISSR) markers, and 10 amplified fragment length polymorphism (AFLP) marker sets were screened and mitochondrial COI gene was sequenced. This study added COI barcodes for the identification of Nemacheilus anguilla, Nemachilichthys rueppelli and Schistura denisoni. RAPD showed higher polymorphism (100%) than the ISSR (93.75-100%) and AFLP (93.86-98.96%). The polymorphic information content (PIC), heterozygosity, multiplex ratio, and gene diversity was observed highest for AFLP primers, whereas the major allele frequency was observed higher for RAPD (0.5556) and lowest for AFLP (0.1667). The COI region of all individuals was successfully amplified and sequenced, which gave a 100% species resolution. Copyright © 2016 Académie des sciences. Published by Elsevier SAS. All rights reserved.

  11. Short communication: first report of nematodes parasitizing the four-eyed-fish, Anableps anableps (Pisces, Cyprinodontiformes).

    PubMed

    Ribeiro, Juliana Souza; de Oliveira, Francisco Carlos Rodrigues; Ederli, Nicole Brand

    2017-08-01

    The genus Anableps is composed of species Anableps anableps, Anableps dowi, and Anableps microlepis. These fishes are tropical and usually live on the surface of brackish water, being popularly known as four-eyed-fishes due to the presence of prominent eyes and a pupil split horizontally. A. anableps and A. microlepis are considered as sister species that live in sympatry in South America. A. dowi, however, is restricted to the Pacific Ocean (Central America) and is considered the most primitive species of this genus. The aims of this study were to investigate the presence of endoparasites in A. anableps from the Parnaíba's Delta and characterize them morphologically. During the necropsy, larvae of Contracaecum sp. in the third larval stage (L3) were collected from the pancreas of A. anableps, but no endoparasites were observed in other organs. The worms had a cuticular tooth and excretory pore located at the anterior end, a thread like body, whitish color, and without distinction of sex. The length of the ventricular appendix of the larvae was much greater than in other studies. This is the first report of endoparasitism in A. anableps and the first report of nematodes in four-eyed-fishes.

  12. Gamma ionization of Phagicola longa (Trematoda:Heterophyidae) in Mugilidae (pisces) in São Paulo, Brazil

    NASA Astrophysics Data System (ADS)

    Antunes, S. A.; Wiendl, F. M.; Almeida Dias, E. R.; Arthur, V.; Daniotti, C.

    1993-07-01

    The mullet (Mugilidae) is a fish caught in large quantities in brackish and marine waters of the southern Brazilian coast, which in consequence of its raw consumption as "sashimi", a typical Japanese dish, has led to ten cases of human infection by Phagicola longa in São Paulo, Brazil. The mullet acts as a second intermediate host for the parasite, as in human heterophysiasis in the Near and Far East. In order to control these infections under commercial storage conditions and in raw consumption, the radiolysis of P. longa was studied in three mullet species-the silver mullet ( Mugil curema), the grey mullet ( M. platanus) and the "paratipema" ( Mugil sp.) - subjected to ionization ranging from 1.0 to 10.0 kGy (2.21 kGy/h). It was observed that 1.0 and 2.0 kGy caused a motility decrease in silver mullet parasites from 100% to 15% and 17%, and that doses of 4.0 and 10.0 kGy caused metacercaria inviability. The parasite motility decreased in the grey mullet treated with doses of 2.0, 2.5, 3.0 and 3.5 kGy, from 56% to 31%, 9%, 18% and 5%, respectively, 4.0 kGy tending to be the control dose for P. longa. This dose also controls other metacercaria found in the "parati-pema", without changing the odor, color or appearance of the treated mullet.

  13. Biogeographic patterns in the cartilaginous fauna (Pisces: Elasmobranchii and Holocephali) in the southeast Pacific Ocean

    PubMed Central

    Vargas-Caro, Carolina; Bennett, Michael B.

    2014-01-01

    The abundance and species richness of the cartilaginous fish community of the continental shelf and slope off central Chile is described, based on fishery-independent trawl tows made in 2006 and 2007. A total of 194,705 specimens comprising 20 species (9 sharks, 10 skates, 1 chimaera) were caught at depths of 100–500 m along a 1,000 km transect between 29.5°S and 39°S. Sample site locations were grouped to represent eight geographical zones within this latitudinal range. Species richness fluctuated from 1 to 6 species per zone. There was no significant latitudinal trend for sharks, but skates showed an increased species richness with latitude. Standardised catch per unit effort (CPUE) increased with increasing depth for sharks, but not for skates, but the observed trend for increasing CPUE with latitude was not significant for either sharks or skates. A change in community composition occurred along the depth gradient with the skates, Psammobatis rudis, Zearaja chilensis and Dipturus trachyderma dominating communities between 100 and 300 m, but small-sized, deep-water dogfishes, such as Centroscyllium spp. dominated the catch between 300 and 500 m. Cluster and ordination analysis identified one widespread assemblage, grouping 58% of sites, and three shallow-water assemblages. Assemblages with low diversity (coldspots) coincided with highly productive fishing grounds for demersal crustaceans and bony fishes. The community distribution suggested that the differences between assemblages may be due to compensatory changes in mesopredator species abundance, as a consequence of continuous and unselective species removal. Distribution patterns and the quantitative assessment of sharks, skates and chimaeras presented here complement extant biogeographic knowledge and further the understanding of deep-water ecosystem dynamics in relation to fishing activity in the south-east Pacific Ocean. PMID:24918036

  14. Biogeographic patterns in the cartilaginous fauna (Pisces: Elasmobranchii and Holocephali) in the southeast Pacific Ocean.

    PubMed

    Bustamante, Carlos; Vargas-Caro, Carolina; Bennett, Michael B

    2014-01-01

    The abundance and species richness of the cartilaginous fish community of the continental shelf and slope off central Chile is described, based on fishery-independent trawl tows made in 2006 and 2007. A total of 194,705 specimens comprising 20 species (9 sharks, 10 skates, 1 chimaera) were caught at depths of 100-500 m along a 1,000 km transect between 29.5°S and 39°S. Sample site locations were grouped to represent eight geographical zones within this latitudinal range. Species richness fluctuated from 1 to 6 species per zone. There was no significant latitudinal trend for sharks, but skates showed an increased species richness with latitude. Standardised catch per unit effort (CPUE) increased with increasing depth for sharks, but not for skates, but the observed trend for increasing CPUE with latitude was not significant for either sharks or skates. A change in community composition occurred along the depth gradient with the skates, Psammobatis rudis, Zearaja chilensis and Dipturus trachyderma dominating communities between 100 and 300 m, but small-sized, deep-water dogfishes, such as Centroscyllium spp. dominated the catch between 300 and 500 m. Cluster and ordination analysis identified one widespread assemblage, grouping 58% of sites, and three shallow-water assemblages. Assemblages with low diversity (coldspots) coincided with highly productive fishing grounds for demersal crustaceans and bony fishes. The community distribution suggested that the differences between assemblages may be due to compensatory changes in mesopredator species abundance, as a consequence of continuous and unselective species removal. Distribution patterns and the quantitative assessment of sharks, skates and chimaeras presented here complement extant biogeographic knowledge and further the understanding of deep-water ecosystem dynamics in relation to fishing activity in the south-east Pacific Ocean.

  15. In situ assessment of two catfish species (pisces, Ariidae) to evaluate pollution in a harbor

    NASA Astrophysics Data System (ADS)

    Neta, Raimunda Nonata Fortes Carvalho; Junior, Audalio Rebelo Torres; Sousa, Débora Batista Pinheiro; de Sousa de Oliveira Mota Andrade, Ticianne; Torres, Hetty Salvino; da Silva Castro, Jonatas; da Silva de Almeida, Zafira; Santos, Débora Martins Silva; Tchaicka, Lígia

    2016-12-01

    A histopathological and biometric database for the catfish Sciades herzbergii and Bagre bagre from São Luís Island (Harbor area) and Caranguejos Island (reference area) in Brazil is presented. Branchial and hepatic lesions were classified into three reaction patterns: 1) circulatory or inflammatory disturbances; 2) regressive changes; 3) progressive changes. The total length (Lt), standard length (Ls), furcal length (Lf), total weight (Wt), and gonad weight (Wg) of each fish were recorded. As expected, most populations of catfish considered in this study are highly heterogeneous, with lengths and weights deviating from the reference sample. No histopathological lesions were observed in Sciades herzbergii examined at the reference site (Caranguejos Island). In contrast, 90% of the catfish S. herzbergii from sites located in the Harbor Area (São Luís Island) had one or more types of branchial and hepatic lesions. As opposed to what was observed in S. herzbergii, more than 86.33% of Bagre bagre individuals showed histopathological alterations in both areas. The utility of histopathological lesions and biometric data as sensitive indicators of the health of wild catfish populations has been demonstrated. Sciades herzbergii proved to be a better species for biomonitoring because it was able to differentiate one impacted site (Port Area/ São Luís Island) from a region relatively free of contaminants (Reference Area/ Caranguejos Island).

  16. Anampses viridis Valenciennes 1840 (Pisces: Labridae)--a case of taxonomic con- fusion and mistaken extinction.

    PubMed

    Russell, Barry C; Craig, Matthew T

    2013-01-01

    Anampses viridis Valenciennes 1840 is known from only three specimens collected from Mauritius, and despite intensive sampling, the species has not been seen or reported since it was originally described. This apparent failure to 'rediscover' A. viridis at Mauritius has led to speculation that it is extinct, and the species has been widely cited as an example of a marine fish extinction. Far from being extinct, Anampses viridis has been taxonomically confused and actually is the adult male (terminal phase) colour form and a junior synonym of A. caeruleopunctatus Rüppell 1829, a species that is common and widespread throughout the Indo-West Pacific region.

  17. Sustaining salmonid populations: A caring understanding of naturalness of taxa

    USGS Publications Warehouse

    Nielsen, Jennifer L.; Regier, Henry A.; Knudsen, E. Eric

    2004-01-01

    Species of the family of Salmonidae occur naturally in Northern Hemisphere waters that remain clear and cool to cold in summer. For purposes of reproduction, salmonids generally behaviorally respond to the currents of streams and lakes in recently glaciated areas. For feeding and maturation, many larger species migrate into existing systems of large lakes, seas, and oceans. The subfamilies include Salmoninae, Coregoninae, and Thymallinae. In many locales and regions of the hemisphere, numerous species of these subfamilies evolved and self-organized into species flocks or taxocenes of bewildering complexity. For example, any individual species may play different or unique ecological roles in different taxocenes. The northern Pacific and Atlantic Ocean ecosystems, with their seas and tributaries, each contained a metacomplex of such taxocenes that, in their natural state some centuries ago, resembled each other but differed in many ways. Humans have valued all species of this family for subsistence, ceremonial, naturalist, gustatory, angling, and commercial reasons for centuries. Modern progressive humans (MPHs), whose industrial and commercial enterprises have gradually spread over this hemisphere in recent time, now affect aquatic ecosystems at all scales from local to global. These human effects mingle in complex ways that together induce uniquely natural salmonid taxocenes to disintegrate with the loss of species, including those groups least tolerant to human manipulations, but extending more recently to those taxa more adapted to anthropogenic change. As we leave the modern era, dominated by MPHs, will we find ways to live sustainably with salmonid taxocenes that still exhibit self-organizational integrity, or will only individual, isolated populations of salmonid species, derived from those most tolerant of MPHs, survive? To achieve future sustainability of salmonids, we suggest implementation of a search for intuitive knowledge based on faith in the wisdom of

  18. Sex Chromosome Evolution, Heterochiasmy, and Physiological QTL in the Salmonid Brook Charr Salvelinus fontinalis

    PubMed Central

    Sutherland, Ben J.G.; Rico, Ciro; Audet, Céline; Bernatchez, Louis

    2017-01-01

    Whole-genome duplication (WGD) can have large impacts on genome evolution, and much remains unknown about these impacts. This includes the mechanisms of coping with a duplicated sex determination system and whether this has an impact on increasing the diversity of sex determination mechanisms. Other impacts include sexual conflict, where alleles having different optimums in each sex can result in sequestration of genes into nonrecombining sex chromosomes. Sex chromosome development itself may involve sex-specific recombination rate (i.e., heterochiasmy), which is also poorly understood. The family Salmonidae is a model system for these phenomena, having undergone autotetraploidization and subsequent rediploidization in most of the genome at the base of the lineage. The salmonid master sex determining gene is known, and many species have nonhomologous sex chromosomes, putatively due to transposition of this gene. In this study, we identify the sex chromosome of Brook Charr Salvelinus fontinalis and compare sex chromosome identities across the lineage (eight species and four genera). Although nonhomology is frequent, homologous sex chromosomes and other consistencies are present in distantly related species, indicating probable convergence on specific sex and neo-sex chromosomes. We also characterize strong heterochiasmy with 2.7-fold more crossovers in maternal than paternal haplotypes with paternal crossovers biased to chromosome ends. When considering only rediploidized chromosomes, the overall heterochiasmy trend remains, although with only 1.9-fold more recombination in the female than the male. Y chromosome crossovers are restricted to a single end of the chromosome, and this chromosome contains a large interspecific inversion, although its status between males and females remains unknown. Finally, we identify quantitative trait loci (QTL) for 21 unique growth, reproductive, and stress-related phenotypes to improve knowledge of the genetic architecture of these

  19. Variable responses of fish assemblages, habitat, and stability to natural-channel-design restoration in Catskill Mountain streams

    USGS Publications Warehouse

    Baldigo, Barry P.; Ernst, Anne G.; Warren, Dana R.; Miller, Sarah J.

    2010-01-01

    Natural-channel-design (NCD) restorations were recently implemented within large segments of five first- and second-order streams in the Catskill Mountains of New York in an attempt to increase channel stability, reduce bed and bank erosion, and sustain water quality. In conjunction with these efforts, 54 fish and habitat surveys were done from 1999 to 2007 at six restored reaches and five stable control reaches to evaluate the effects of NCD restoration on fish assemblages, habitat, and bank stability. A before–after–control–impact study design and two-factor analysis of variance were used to quantify the net changes in habitat and fish population and community indices at treatment reaches relative to those at unaltered control reaches. The density and biomass of fish communities were often dominated by one or two small prey species and no or few predator species before restoration and by one or more trout (Salmonidae) species after restoration. Significant increases in community richness (30%), diversity (40%), species or biomass equitability (32%), and total biomass (up to 52%) in at least four of the six restored reaches demonstrate that NCD restorations can improve the health and sustainability of fish communities in geomorphically unstable Catskill Mountain streams over the short to marginally long term. Bank stability, stream habitat, and trout habitat suitability indices (HSIs) generally improved significantly at the restored reaches, but key habitat features and trout HSIs did not change or decreased at two of them. Fish communities and trout populations at these two reaches were not positively affected by NCD restorations. Though NCD restorations often had a positive effect on habitat and fish communities, our results show that the initial habitat conditions limit the relative improvements than can be achieved, habitat quality and stability do not necessarily respond in unison, and biotic and abiotic responses cannot always be generalized.

  20. Fish assemblages and environmental correlates in least-disturbed streams of the upper Snake River basin

    USGS Publications Warehouse

    Maret, T.R.; Robinson, C.T.; Minshall, G.W.

    1997-01-01

    Fish assemblages and environmental variables were evaluated from 37 least-disturbed, 1st- through 6th-order streams and springs in the upper Snake River basin, western USA. Data were collected as part of the efforts by the U.S. Geological Survey National Water Quality Assessment Program and the Idaho State University Stream Ecology Center to characterize aquatic biota and associated habitats in least-disturbed coldwater streams. Geographically, the basin comprises four ecoregions. Environmental variables constituting various spatial scales, from watershed characteristics to in stream habitat measures, were used to examine distribution patterns in fish assemblages. Nineteen fish species in the families Salmonidae, Cottidae, Cyprinidae, and Catostemidae were collected. Multivariate analyses showed high overlap in stream fish assemblages among the ecoregions. Major environmental factors determining species distributions in the basin were stream gradient, watershed size, conductivity, and percentage of the watershed covered by forest. Lowland streams (below 1,600 m in elevation), located mostly in the Snake River Basin/High Desert ecoregion, displayed different fish assemblages than upland streams (above 2,000 m elevation) in the Northern Rockies, Middle Rockies, and Northern Basin and Range ecoregions. For example, cotrids were not found in streams above 2,000 m in elevation. In addition, distinct fish assemblages were found in tributaries upstream and downstream from the large waterfall, Shoshone Falls, on the Snake River. Fish metrics explaining most of the variation among sites included the total number of species, number of native species, number of salmonid species, percent introduced species, percent cottids, and percent salmonids. Springs also exhibited different habitat conditions and fish assemblages than streams. The data suggest that the evolutionary consequences of geographic features and fish species introductions transcend the importance of ecoregion

  1. Potential strategies for recovery of lake whitefish and lake herring stocks in eastern Lake Erie

    USGS Publications Warehouse

    Oldenburg, K.; Stapanian, M.A.; Ryan, P.A.; Holm, E.

    2007-01-01

    Lake Erie sustained large populations of ciscoes (Salmonidae: Coregoninae) 120 years ago. By the end of the 19th century, abundance of lake whitefish (Coregonus clupeaformis) had declined drastically. By 1925, the lake herring (a cisco) population (Coregonus artedii) had collapsed, although a limited lake herring fishery persisted in the eastern basin until the 1950s. In the latter part of the 20th century, the composition of the fish community changed as oligotrophication proceeded. Since 1984, a limited recovery of lake whitefish has occurred, however no recovery was evident for lake herring. Current ecological conditions in Lake Erie probably will not inhibit recovery of the coregonine species. Recovery of walleye (Sander vitreus) and efforts to rehabilitate the native lake trout (Salvelinus namaycush) in Lake Erie will probably assist recovery because these piscivores reduce populations of alewife (Alosa psuedoharengus) and rainbow smelt (Osmerus mordax), which inhibit reproductive success of coregonines. Although there are considerable spawning substrates available to coregonine species in eastern Lake Erie, eggs and fry would probably be displaced by storm surge from most shoals. Site selection for stocking or seeding of eggs should consider the reproductive life cycle of the stocked fish and suitable protection from storm events. Two potential sites in the eastern basin have been identified. Recommended management procedures, including commercial fisheries, are suggested to assist in recovery. Stocking in the eastern basin of Lake Erie is recommended for both species, as conditions are adequate and the native spawning population in the eastern basin is low. For lake herring, consideration should be given to match ecophenotypes as much as possible. Egg seeding is recommended. Egg seeding of lake whitefish should be considered initially, with fingerling or yearling stocking suggested if unsuccessful. Spawning stocks of whitefish in the western basin of Lake

  2. Novel SINE families from salmons validate Parahucho (Salmonidae) as a distinct genus and give evidence that SINEs can incorporate LINE-related 3'-tails of other SINEs.

    PubMed

    Matveev, Vitaliy; Nishihara, Hidenori; Okada, Norihiro

    2007-08-01

    Short interspersed elements (SINEs) constitute a group of retroposons propagating in the genome via a mechanism of reverse transcription, in which they depend on the enzymatic machinery of long retroposons (LINEs). Over 70 SINE families have been described to date from the genomes of various eukaryotes. Here, we characterize two novel SINEs from salmons (Actinopterygii: Salmonoidei). The first family, termed SlmI, was shown to be widespread among all genera of the suborder. These SINEs have a tRNA(Leu)-related promoter region at their 5'-end, a unique central conserved domain with a subfamily-specific region, and an end with RSg-1-LINE-derived 3'-terminus preceding the A/T-rich tail. The same LINE-related segment is also shared by two other salmonid SINEs: HpaI and OS-SINE1. The structural peculiarities and overall sequence identity of the SlmI 3'-terminus suggest that it has been acquired from HpaI SINEs but not directly from the partner LINE. This region plays a crucial role in the process of retrotransposition of short interspersed elements, and the case of its SINE-to-SINE transmission is the first recorded to date. Possible scenarios and potential evolutionary implications of the observed interaction between short retroposons are discussed. Apart from the above, we found a copy of the SlmI SINE in the GenBank entry for the blood fluke, Schistosoma japonicum (Trematoda: Strigeiformes) -- a trematode causing one of the most important human helminth infections, with its genome known to host other groups of salmonoid retroposons. In the present article, we suggest our views with regard to possible ways in which such an intensive horizontal transfer of salmonoid retroposons to the schistosomal genome occurs. The second novel SINE family, termed SlmII, originates from one of the SlmI subfamilies, with which it shares the same tRNA-related region, central domain, and a part of RSg-1-derived segment, but has a different 3'-tail of unidentified origin. Its distribution among salmonids validates Parahucho (Japanese huchen) as a distinct monotypic genus.

  3. Negligible risk associated with the movement of processed rainbow trout, Oncorhynchus mykiss (Walbaum), from an infectious haematopoietic necrosis virus (IHNV) endemic area

    USGS Publications Warehouse

    LaPatra, S.E.; Batts, W.N.; Overturf, K.; Jones, G.N.; Shewmaker, W.D.; Winton, J.R.

    2001-01-01

    To assess the risk of transmission of infectious haematopoietic necrosis virus (IHNV) associated with the movement of processed rainbow trout, Oncorhynchus mykiss, from an area where the virus is endemic, 240 freshly eviscerated fish (225-500 g) exhibiting spinal curvature or spinal compression types of deformities were tested for IHNV by virus isolation and polymerase chain reaction (PCR) techniques. Commercially produced rainbow trout, approximately 1-year-old, that exhibited spinal deformities were considered to have had a high likelihood of having survived an outbreak of IHN. Serological analysis of fish exhibiting spinal curvature or spinal compression types of deformities for anti-IHNV antibodies resulted, in 71 and 50% of the serum samples, respectively, with detectable neutralization activity suggesting previous infection with IHNV. A portion of the skin and muscle in the area of the deformity was collected, as well as brain tissue from each commercially processed fish. Tissue homogenates were tested for IHNV using the epithelioma papulosum cyprini (EPC) cell line pretreated with polyethylene glycol and the chinook salmon embryo (CHSE-214) cell line using standard methods. Nested, reverse transcriptase (RT)-PCR for the detection of IHNV used the central 1231 bp portion of the glycoprotein (G) challenge studies and is suggested as a mechanism responsible for virus clearance. These results provide scientific information that can be used to assess the risk associated with the movement of processed rainbow trout from an IHNV endemic area.

  4. Line length dependencies in interconnect optimization

    NASA Astrophysics Data System (ADS)

    Kadoch, Daniel; Duane, Michael; Lee, Yohan

    1997-09-01

    Metal line delay has become increasingly important for ULSI devices. Numerous expressions and software tools have been developed to describe interconnect delay as a function of the geometry and layout. Although many of these formulas have line length effects, this has not been explored in depth. Most software tools are either geared towards circuit designers, or involve more complex and CPU-intensive 3D modeling. In this work, PISCES (a 2D device simulator) was used to extract metal capacitance per unit length. We extend this approach for various lengths by creating a ladder network of the RC components and simulating in SPICE, or using simple closed-form Elmore delay equations. A new key result is that there are optimum metal line width/space for a fixed pitch and height/space ratios that are metal length dependent. For metal lines shorter than about 1500 micrometers , it is better to have narrower metal lines, and for lengths less than 500 micrometers , shrinking metal height is desirable because the penalty in resistance is more than compensated by the decrease in capacitance. For longer lines, the time delay is dominated by resistance, and wider, taller lines are better. Increasing metal spacing or reducing dielectric constant were beneficial for both long and short metal lines.

  5. Modeling Deuterium Release from Plasma Implanted Surfaces

    NASA Astrophysics Data System (ADS)

    Grossman, A. A.; Doerner, R.; Hirooka, Y.; Luckhardt, S. C.; Sze, F. C.

    1997-11-01

    When energetic ions or atoms of hydrogen isotopes interact with a solid surface, they may either be reflected or they may be implanted, a slowing down process within the subsurface layer of the energetic particles to thermal velocities. Subsequent interactions of the thermalized particles are those of diffusion and trapping within the material and the possibility of re-emission from the solid via desorption. The diffusion equation and its boundary conditions govern the transport of this thermalized hydrogen within the material. Diffusivities obey an Arrhenius law over as much as fourteen orders of magnitude for the temperature range of interest for a fusion reactor first wall and divertor plate. Using TMAP4, a variety of diffusion models are set up for comparison with experiments on PISCES which involve implantation and desorption of deuterium from beryllium, tungsten, carbon and boron carbide. The parameters and characteristics of the models which give the closest fit to the experimental data are reported. At the high fluences of these experiments, it is necessary to take into account saturation effects during implantation using a separate implantation layer with thickness given by TRIM and a higher trapping to lattice ratio than in the bulk in order to model the experimental data.

  6. Erosion and Retention Properties of Beyllium

    NASA Astrophysics Data System (ADS)

    Doerner, R.; Grossman, A.; Luckhardt, S.; Serayderian, R.; Sze, F. C.; Whyte, D. G.

    1997-11-01

    Experiments in PISCES-B have investigated the erosion and hydrogen retention characteristics of beryllium. The sputtering yield is strongly influenced by trace amounts (≈1 percent) of intrinsic plasma impurities. At low sample exposure temperatures (below 250^oC), the beryllium surface remains free of contaminants and a sputtering yield similar to that of beryllium-oxide is measured. At higher exposure temperatures, impurities deposited on the surface can diffuse into the bulk and reduce their chance of subsequent erosion. These impurities form a surface layer mixed with beryllium which exhibits a reduced sputtering yield. Depth profile analysis has determined the composition and chemical bonding of the impurity layer. The hydrogen isotope retention of beryllium under ITER first wall (temperature = 200^oC, ion flux = 1 x 10^21 m-2 s-1) and baffle (temperature = 500^oC, ion flux = 1 x 10^22 m-2 s-1) conditions has been investigated. The retained deuterium saturates above a fluence of 10^23 m-2 at about 4 x 10^20 m-2 for the 200^oC exposure and at 2 x 10^20 m-2 for the 500^oC case. The TMAP code is used to model the deuterium release characteristics.

  7. Natural variability of marine ecosystems inferred from a coupled climate to ecosystem simulation

    NASA Astrophysics Data System (ADS)

    Le Mézo, Priscilla; Lefort, Stelly; Séférian, Roland; Aumont, Olivier; Maury, Olivier; Murtugudde, Raghu; Bopp, Laurent

    2016-01-01

    This modeling study analyzes the simulated natural variability of pelagic ecosystems in the North Atlantic and North Pacific. Our model system includes a global Earth System Model (IPSL-CM5A-LR), the biogeochemical model PISCES and the ecosystem model APECOSM that simulates upper trophic level organisms using a size-based approach and three interactive pelagic communities (epipelagic, migratory and mesopelagic). Analyzing an idealized (e.g., no anthropogenic forcing) 300-yr long pre-industrial simulation, we find that low and high frequency variability is dominant for the large and small organisms, respectively. Our model shows that the size-range exhibiting the largest variability at a given frequency, defined as the resonant range, also depends on the community. At a given frequency, the resonant range of the epipelagic community includes larger organisms than that of the migratory community and similarly, the latter includes larger organisms than the resonant range of the mesopelagic community. This study shows that the simulated temporal variability of marine pelagic organisms' abundance is not only influenced by natural climate fluctuations but also by the structure of the pelagic community. As a consequence, the size- and community-dependent response of marine ecosystems to climate variability could impact the sustainability of fisheries in a warming world.

  8. A high-resolution image of the inner shell of the P Cygni nebula in the infrared [Fe II] line

    NASA Astrophysics Data System (ADS)

    Arcidiacono, C.; Ragazzoni, R.; Morossi, C.; Franchini, M.; di Marcantonio, P.; Kulesa, C.; McCarthy, D.; Briguglio, R.; Xompero, M.; Busoni, L.; Quirós-Pacheco, F.; Pinna, E.; Boutsia, K.; Paris, D.

    2014-09-01

    Using the adaptive optics system of the Large Binocular Telescope, we have obtained near-infrared camera PISCES images of the inner shell of the nebula around the luminous blue variable star P Cygni in the [Fe II] emission line at 1.6435 μm. We have combined the images in order to cover a field of view of about 20 arcsec around P Cygni, thus providing the high-resolution (0.08 arcsec) two-dimensional spatial distribution of the inner shell of the P Cygni nebula in [Fe II]. We have identified several nebular emission regions that are characterized by a signal-to-noise ratio > 3. A comparison of our results with those available in the literature shows full consistency with the findings of Smith & Hartigan, which are based on radial velocity measurements, and relatively good agreement with the extension of emission nebula in [N II] λ6584 found by Barlow et al. We have clearly also detected extended emission inside the radial distance R = 7.8 arcsec and outside R = 9.7 arcsec, which are the nebular boundaries proposed by Smith & Hartigan. New complementary spectroscopic observations are planned in order to measure radial velocities and to derive the three-dimensional distribution of the P Cygni nebula.

  9. Plate tectonics and biogeographical patterns of the Pseudophoxinus (Pisces: Cypriniformes) species complex of central Anatolia, Turkey.

    PubMed

    Hrbek, Tomas; Stölting, Kai N; Bardakci, Fevzi; Küçük, Fahrettin; Wildekamp, Rudolf H; Meyer, Axel

    2004-07-01

    We investigated the phylogenetic relationships of Pseudophoxinus (Cyprinidae: Leuciscinae) species from central Anatolia, Turkey to test the hypothesis of geographic speciation driven by early Pliocene orogenic events. We analyzed 1141 aligned base pairs of the complete cytochrome b mitochondrial gene. Phylogenetic relationships reconstructed by maximum likelihood, Bayesian likelihood, and maximum parsimony methods are identical, and generally well supported. Species and clades are restricted to geologically well-defined units, and are deeply divergent from each other. The basal diversification of central Anatolian Pseudophoxinus is estimated to have occurred approximately 15 million years ago. Our results are in agreement with a previous study of the Anatolian fish genus Aphanius that also shows a diversification pattern driven by the Pliocene orogenic events. The distribution of clades of Aphanius and Pseudophoxinus overlap, and areas of distribution comprise the same geological units. The geological history of Anatolia is likely to have had a major impact on the diversification history of many taxa occupying central Anatolia; many of these taxa are likely to be still unrecognized as distinct. Copyright 2004 Elsevier Inc.

  10. Feeding of the megamouth shark (Pisces: Lamniformes: Megachasmidae) predicted by its hyoid arch: a biomechanical approach.

    PubMed

    Tomita, Taketeru; Sato, Keiichi; Suda, Kenta; Kawauchi, Junro; Nakaya, Kazuhiro

    2011-05-01

    Studies of the megamouth shark, one of three planktivorous sharks, can provide information about their evolutionary history. Megamouth shark feeding has never been observed in life animals, but two alternative hypotheses on biomechanics suggest either feeding, i.e., ram feeding or suction feeding. In this study, the second moment of area of the ceratohyal cartilages, which is an indicator of the flexural stiffness of the cartilages, is calculated for 21 species of ram- and suction-feeding sharks using computed tomography. The results indicate that suction-feeding sharks have ceratohyal cartilages with a larger second moment of area than ram-feeding sharks. The result also indicates that the ram-suction index, which is an indicator of relative contribution of ram and suction behavior, is also correlated with the second moment of area of the ceratohyal. Considering that large bending stresses are expected to be applied to the ceratohyal cartilage during suction, the larger second moment of area of the ceratohyal of suction-feeding sharks can be interpreted as an adaptation for suction feeding. Based on the small second moment of area of the ceratohyal cartilage of the megamouth shark, the feeding mode of the megamouth shark is considered to be ram feeding, similar to the planktivorous basking shark. From these results, an evolutionary scenario of feeding mechanics of three species of planktivorous sharks can be suggested. In this scenario, the planktivorous whale shark evolved ram feeding from a benthic suction-feeding ancestor. Ram feeding in the planktivorous megamouth shark and the basking shark evolved from ram feeding swimming-type ancestors and that both developed their unique filtering system to capture small-sized prey. Copyright © 2011 Wiley-Liss, Inc.

  11. Malformations of the gill filaments of the ruffe Gymnocephalus cernuus (L.) (Pisces) caused by echinostomatid metacercariae.

    PubMed

    Molnár, K; Gibson, D I; Majoros, G; Székely, C; Sándor, D; Cech, G

    2016-11-01

    In parasite surveys of fishes from Lake Balaton and its tributaries in Hungary, infections with metacercariae of a species of the digenean genus Echinochasmus (Trematoda: Echinostomatidae) were found in seven species of fish. In ruffe, Gymnocephalus cernuus, malformations of the gill filaments apparently caused by these infections were observed. These malformations were in the form of bifurcations of the filaments at about their mid-length. At the point where the filaments bifurcate, an Echinochasmus metacercaria was always embedded in the cartilaginous ray of the gill filament. All specimens of the ruffe were found to be infected by these metacercariae, and each ruffe specimen was infected by 30-300 metacercariae. Such a bifurcation was found in all of the ruffe specimens, but, apart from these gill malformations, the metacercariae produced only local changes in the cartilage. In the other six infected fish species, only local signs were observed in the cartilage. Experimental infections of chicks with metacercariae resulted in the finding of the sexual adult (marita) of an unidentified species of Echinochasmus. ITS sequences of the adult and metacercaria corresponded with each other, and also with a cercaria isolated from a gravel snail (Lithoglyphus naticoides), with a 99.5-100% similarity. © 2016 John Wiley & Sons Ltd.

  12. Range expansion of the Mayan cichlid, cichlasoma urophthalmus (pisces, cichlidae), above 28°N in Florida

    USGS Publications Warehouse

    Paperno, R.; Ruiz-Carus, R.; Krebs, J.M.; McIvor, C.C.

    2008-01-01

    Introduced exotic species are a well-recognized problem in Florida's subtropical ecosystems. The presence of the exotic Mayan cichlid (Cichlasoma urophthalmus) was first confirmed in Florida in 1983, when numerous individuals were found in the northeastern Florida Bay. Since then, this species has continued to expand its range northward. The capture, beginning in October 2004 to present, of large numbers of Mayan cichlids from central Florida's east- and west-coast mangrove systems north of 28°N latitude is documented here. Mayan cichlids in a wide range of sizes (estimated ages 0-7 years) at both east- and west-coast sites were collected. In addition, macroscopic examination of gonads showed the presence of developing eggs. The occurrence of multiple age-classes, maturing individuals, cichlid nests, and juveniles, plus repeated collections over a four-year period, indicates that the Mayan cichlid is successfully reproducing and surviving the average winter temperatures in some estuarine waters in central Florida.

  13. Homing behaviour and individual identification of the pipefish Nerophis lumbriciformis (Pisces; Syngnathidae): a true intertidal resident?

    NASA Astrophysics Data System (ADS)

    Monteiro, Nuno Miguel; Vieira, Maria da Natividade; Almada, Vitor

    2005-04-01

    Syngnathids have been the focus of growing interest due to their peculiar reproductive biology and vulnerability to environmental degradation and overcollecting. In this study, near the south limit of the species' geographic distribution, a description of the homing behaviour of the worm pipefish, Nerophis lumbriciformis, based on the unique facial pigmentation patterns, is presented. Even though the amount of facial pigmentation was substantially higher in larger adult females, suggesting that it can be part of the secondary sexual repertoire of this sex role reversed species, this technique allowed for the positive identification of adult individuals (males and females) during at least 19 months. Recaptures showed that this pipefish shows a strong homing behaviour, with individuals being regularly captured within less than 2 m of the original identification event. The absence of horizontal migrations to adjacent areas and the observation of adults in the subtidal, together with the overall low number of recaptures (even though some individuals were cyclically resighted) highlighted the fact that the intertidal is not N. lumbriciformis' permanent residence. This observation also demonstrates that the estimation of the population size, important for conservation purposes, based solely on intertidal data can be misleading because captured individuals are only a fraction of a larger, mainly subtidal, population.

  14. Feeding ecology of Liza ramada (Risso, 1810) (Pisces, Mugilidae) in a south-western estuary of Portugal

    NASA Astrophysics Data System (ADS)

    Almeida, P. R.

    2003-05-01

    The feeding activity of the Liza ramada population inhabiting the Mira estuary (Portugal) is reduced during the winter and summer months. At the beginning of the spawning migration (i.e. November) an increase in the amount of food ingested was noticed. In the upper estuary, the feeding behaviour is independent of the tidal cycle, although there is some evidence of a daily rhythm in the food consumption rate, with a reduction during the night. No significant correlation was found between the quantity of particulate organic matter and the concentration of microalgae present in the stomach contents, and it seems that the bulk of the organic matter ingested by the thin-lipped grey mullets comes from a different origin than planktonic or benthic microalgae. The L. ramada population showed a positive selection for sediment particles between 55 and 250 μm in diameter. In general, the diet composition of this species showed a low diversity of food items. A total of 52 food items were identified in the stomach contents, the Bacillariophyceae being the dominant group. The genera Melosira and Ciclotella were the most common and abundant food items, although the genera Navicula, Nitzschia and Surirella were also classified as preferential food items. It was found that the volume of ploughed sediment that resulted from the feeding activity of the thin-lipped grey mullets, and the correspondent disturbed area increased exponentially with the length of the fish.

  15. Analysis of mitochondrial DNA: taxonomic and phylogenetic relationships in two fish taxa (Pisces: Mugilidae and Cyprinidae).

    PubMed

    Semina, A V; Polyakova, N E; Brykov, Vl A

    2007-12-01

    To solve some systematic questions as well as to study genetic variability and evolutionary relationships in two groups of fish belonging to the Mugilid (Mugilidae) and Cyprinid (Cyprinidae) families, we have used restriction fragment length polymorphism analysis of mitochondrial DNA (mtDNA) fragments amplified in polymerase chain reaction. The analysis of three mtDNA fragments of 7220 bp total length of six Mugilid species has shown that Mediterranean Liza aurata, L. ramada, L. saliens, and Chelon labrosus form a common cluster, L. aurata and C. labrosus being the closest relatives, whereas L. haematocheilus (syn. C. haematocheilus) of the Sea of Japan forms a sister group to the Mediterranean cluster. It was found that Chelon and Liza genera are paraphyletic, and therefore their division into two genera is unnatural and they should be synonymized. According to priority, Liza species should be ascribed to Chelon genus. Mugil cephalus is the most distant compared to the rest of the species studied. The level of genetic divergence between allopatric samples of M. cephalus from the Sea of Japan and the Mediterranean Sea has proved to be very high--4.5% of nucleotide substitutions. The analysis of four mtDNA fragments of 9340 bp total length of six Cyprinid species has shown that L. waleckii is the most genetically distant. Pseudaspius leptocephalus is a sister group to Tribolodon species. All Tribolodon species form a common cluster with T. sachalinensis as a root. The remaining species form two branches, one of which includes T. nakamurai and T. brandtii, another one combines T. hakonensis and a new form of Tribolodon revealed that is close to T. hakonensis by its mtDNA (2.4% of nucleotide substitutions). This new form might be an independent species.

  16. Mitochondrial and Allozyme Genetics of Incipient Speciation in a Landlocked Population of Galaxias Truttaceus (Pisces: Galaxiidae)

    PubMed Central

    Ovenden, J. R.; White, RWG.

    1990-01-01

    Galaxias truttaceus is found in coastal rivers and streams in south-eastern Australia. It spawns at the head of estuaries in autumn and the larvae spend 3 months of winter at sea before returning to fresh water. In Tasmania there are landlocked populations of G. truttaceus in a cluster of geologically young lakes on the recently glaciated Central Plateau. These populations have no marine larval stage and spawn in the lakes in spring. Speciation due to land locking is thought to be a frequent occurrence within Galaxias. To investigate the nature of the speciation event which may be occurring within lake populations of G. truttaceus we studied the mitochondrial DNA (mtDNA) and allozyme diversity of both lake and stream populations. Using the presence or absence of restriction sites recognized by 13 six-base restriction endonucleases, we found 58 mtDNA haplotypes among 150 fish collected from 13 Tasmanian and one south-east Australian mainland stream populations. The most parsimonious network relating the haplotypes by site loss or gain was starlike in shape. We argue that this arrangement is best explained by selection upon slightly beneficial mutations within the mitochondrial genome. Gene diversity analysis under Wright's island model showed that the populations in each drainage were not genetically subdivided. Only two of these stream haplotypes were found among the 66 fish analyzed from four lake populations. Despite the extreme lack of mtDNA diversity in lake populations, the observed nuclear DNA heterozygosity of 40 lake fish (0.10355) was only slightly less than that of 82 stream fish (0.11635). In the short time (3000-7000 years) that the lake fish have been landlocked, random genetic drift in a finite, stable-sized population was probably not responsible for the lack of mtDNA diversity in the lake populations. We infer the lake populations have probably experienced at least one, severe, but transitory bottleneck possibly induced by natural selection for life-history characters essential for survival in the lacustrine habitat. If speciation is occurring in the landlocked populations of G. truttaceus, then it may be driven by genetic transilience. PMID:2155855

  17. The Lusitania Province as a center of diversification: the phylogeny of the genus Microlipophrys (Pisces: Blenniidae).

    PubMed

    Levy, A; Wirtz, P; Floeter, S R; Almada, V C

    2011-02-01

    The Lusitania Province has been considered a transition zone between the Atlantic northern cold waters and Tropical warm waters. Tropical species have expanded their ranges during warm periods and either retreated during cold periods or survived in local refuges. Successive waves of dispersion into this Province could have favored diversification through geographic isolation. Taxa that remained in this large Province may also have diversified in loco. We analyzed molecular markers of the genus Microlipophrys (family Blenniidae) that confirm the validity of this genus and of the seven recognized species. Microlipophrys and its sister clade apparently originated within Lusitania and dispersed into the tropics at a later stage. Copyright © 2010 Elsevier Inc. All rights reserved.

  18. Growth, feeding and reproduction of the catfish Eremophilus mutisii (Pisces: Trichomycteridae), from artificial reservoirs in Colombia.

    PubMed

    Pinilla, Gabriel; Abril, Maritza; González, Esperanza

    2006-06-01

    The catfish, Eremophilus mutisii, was cultured under different densities in artificial rainfall reservoirs at Caldas, Boyacá, Colombia. At capture, the average total length of the animals was 10 cm and the weight ranged between 9 and 10 g. These fish were in initial stages of sexual development. After a year in the reservoirs, they had increased in length and weight as follows (densities in parentheses): 5.22 cm and 27.23 g (0.5 individuals/m2); 1.98 cm and 8.79 g (1 individual/m2), and 2.45 cm and 0.82 g (2 individuals/m2). They were at the early stages of sexual maturity, and their condition factor fluctuated between 0.61 and 0.96. They preferably ingested insect larvae that were found in benthic and littoral communities of the reservoirs. The benthos was dominated by ephippia of Daphnia, lumbriculids, and chironomid larvae. The biomass of benthic organisms ranged between 0.1126 and 1.3847 g/m2. In the littoral community aquatic insects were the most important component, especially the hemipterans. The biomass of the littoral fauna ranged between 0.14 and 4.05 g/m2.

  19. Pseudocapillaria (Ichthyocapillaria) ophisterni sp. n. (Nematoda : Capillariidae) from the swamp-eel Ophisternon aenigmaticum (Pisces) in Mexico.

    PubMed

    Moravec, F; Salgado-Maldonado, G; Jiménez-García, I

    2000-04-01

    A new nematode species, Pseudocapillaria ophisterni sp. n., is described from the intestine and rarely from the stomach of the swamp-eel, Ophisternon aenigmaticum Rosen et Greenwood, from Catemaco Lake, Veracruz, Mexico. In having both caudal lobes in the male interconnected by a distinct dorsal membrane, it belongs to the subgenus Ichthyocapillaria. It differs from the three species in this subgenus mainly in possessing either a distinctly longer spicule or a smaller length of oesophagus relative to body length. It also differs in host type and geographical distribution. P. ophisterni is the first capillariid species reported from synbranchiform fishes.

  20. Vernal Point and Anthropocene

    NASA Astrophysics Data System (ADS)

    Chavez-Campos, Teodosio; Chavez S, Nadia; Chavez-Sumarriva, Israel

    2014-05-01

    proposed as a prime meridian that was based on: (1) the new prime meridian (72º W == 0º) was parallel to the Andes and its projection the meridian (108° E == 180º) intersects the Tibetan plate (Asia). (2) On earth these two areas present the greatest thickness of the crust with an average depth of 70 kilometers. The aim was to synchronize the earth sciences phenomena (e.g. geology, geophysics, etc.). During the Holocene the vernal point retrograde 12,000 years and enters into the Aquarius constellation on March 20, 1940. That date was proposed as the beginning of the Anthropocene because on that date proposed the vernal point passes from the Pisces constellation to Aquarius constellation, besides that event around the date proposed, the Second World War begun. This event was a global change in the earth. The base of the Anthropocene was defined by the passage of the vernal point from the Pisces Constellation to the Aquarius constellation.

  1. Antigen-binding cells in the peripheral blood of sockeye salmon, Oncorhynchus nerka Walbaum, induced by immersion or intraperitoneal injection of Vibrio languilarum bacterin

    USGS Publications Warehouse

    1981-01-01

    We used an immunocytoadherence assay to monitor the response of antigen-binding cells (ABC) in the peripheral blood of sockeye salmon, Oncorhynchus nerka, after immersion in, or intraperitoneal injection of, Vibrio anguillarum LS 1–74 bacterin. Both methods initiated an elevated ABC response in less than one day; this response persisted one week longer in the injected than in the immersed fish.

  2. Phylogenetic analysis of the Pacific cutthroat trout (Oncorhynchus clarki ssp.: Salmonidae) based on partial mtDNA ND4 sequences: a closer look at the highly fragmented inland species.

    PubMed

    Wilson, Wade D; Turner, Thomas F

    2009-08-01

    The genus Oncorhynchus includes Pacific salmon and trout (anadromous and land-locked) species of the western United States and Mexico. All species and subspecies in this group are threatened, endangered, sensitive, or species of conservation concern in portions of their native ranges. To examine the relationships of the species within Oncorhynchus we sequenced a 768 bp fragment of the protein-encoding ND4 mtDNA region. We included all six recognized subspecies of O. clarki (cutthroat trout), O. gilaegilae (Gila trout) and O. g. apache (Apache trout). Gene trees from likelihood and Bayesian phylogenetic analyses revealed that Salvelinus was the sister group to Oncorhynchus, and as expected based on previous studies, O. clarki was sister to a clade that consisted of O. mykiss plus O. g. gilae and O. g. apache. Within the cutthroat clade (O. clarki), the coastal form O. c. clarki was basal with the Rio Grande cutthroat (O. c. virginalis) most derived. Divergence dating based on a fossil calibration molecular clock showed the oldest clade (mean node age) was O. masou ssp., which diverged roughly 7.6 MYA. Highest probability density intervals for divergence of O. masou overlapped with divergence (6.3 MYA) of Pacific salmon clades ((O. gorbuscha + O. nerka) and (O. tshawytscha + O. kisutch)). The Pacific trout clade ((O. mykiss + O. gilae ssp.) + (O. clarki ssp.)) diverged from the Pacific salmon around 6.3 MYA, with most of the diversification within the O. clarki clade occurring in the last 1 MY.

  3. CLONAL INHERITANCE OF A DIPLOID NUCLEAR GENOME BY A HYBRID FRESHWATER MINNOW (PHOXINUS EOS-NEOGAEUS, PISCES: CYPRINIDAE).

    PubMed

    Goddard, Kathryn Ann; Dawley, Robert M

    1990-07-01

    Hybrids between the minnows Phoxinus eos and Phoxinus neogaeus coexist with a population of P. eos in East Inlet Pond, Coos Co., New Hampshire. Chromosome counts and flow cytometric analysis of erythrocyte DNA indicate that these hybrids include diploids, triploids, and diploid-triploid mosaics. The mosaics have both diploid and triploid cells in their bodies, even within the same tissues. All three hybrid types are heterozygous at seven putative loci for which P. eos and P. neogaeus are fixed for different allozymes, indicating that the hybrids carry one eos and one neogaeus haploid genome. The diploid hybrids are therefore P. eos-neogaeus, whereas the triploids and mosaics are derived from P. eos-neogaeus but have an extra eos or neogaeus genome in all or some of their cells. Diploid, triploid, and mosaic hybrids accept tissue grafts from diploid hybrids, indicating that all individuals carry the identical eos-neogaeus diploid genome. Thus, one P. eos-neogaeus clone exists at East Inlet Pond. Grafts among the triploids and mosaics or from these individuals to diploid hybrids are rejected, indicating that the third genome is different in each triploid and mosaic individual. In this study, diploid and mosaic hybrids, carrying the clonal eos-neogaeus genome, were bred in the laboratory with males of P. eos or P. neogaeus. Both diploid and mosaic hybrids produced diploid, triploid, and mosaic offspring, revealing the source of the three hybrid types present at East Inlet Pond. These offspring accepted grafts from P. eos-neogaeus individuals, indicating that they all had inherited the identical eos-neogaeus genome. Most grafts among triploid and mosaic progeny, or from these individuals to their diploid broodmates, were rejected, indicating that the third genome was different in each triploid and mosaic (as was observed in the wild hybrids) and was contributed by sperm from males of P. eos or P. neogaeus. Diploid progeny are produced if sperm serves only to stimulate embryogenesis; triploid or mosaic progeny are produced if the sperm genome is incorporated. Although based on a mode of reproduction that by definition results in a genetically identical community of individuals, i.e., gynogenesis, reproduction in hybrid Phoxinus results in a variety of genetically distinct individuals by the incorporation of sperm into approximately 50% of the diploid ova produced. © 1990 The Society for the Study of Evolution.

  4. Pseudocapillaria yucatanensis sp. n. (Nematoda: Capillariidae) from the bagre Rhamdia guatemalensis (Pisces) from cenotes in Yucatan, Mexico.

    PubMed

    Moravec, F; Scholz, T; Vivas Rodríguez, C

    1995-01-01

    A new nematode species, Pseudocapillaria yucatanensis sp. n., is described from the intestine of the freshwater pimelodid catfish Rhamdia guatemalensis (Günther) from cenotes (= sinkholes) in Yucatan, Mexico. It differs from other three related species parasitizing freshwater fishes mainly in possessing the spicule with a simple rim of its proximal end and a non-expanded distal end, in the length of the spicule (0.218-0.295 mm), and the size (0.050-0.060 x 0.025-0.030 mm), shape and structure of eggs, and also in the host types and geographical distribution. Pseudocapillaria yucatanensis is the first known autochtonous species of Pseudocapillaria parasitizing freshwater fishes in Mexico.

  5. [Verification of the eclossion mark on the sagittal otolith of the larvae of Sardinella aurita (Pisces: Clupeidae)].

    PubMed

    Balza, M A; Marín, B

    2000-12-01

    The study of otolith in larvae is important to determine fish age and growth, essential parameters in the study and management of fisheries resources. In this study, the formation of the hatching mark in Sardinella aurita was verified on ichthyoplankton samples collected off southern Cubagua island, Venezuela, from May 1998 to January 1999. The embryos were kept alive using a culture system until they hatched and daily a group of 10 to 30 larvae were fixed in 95% ethanol. An image analysis system was used to measure morphometric characteristics of larvae and sagittal otoliths. Following are mean values in newly hatched larvae: otolith hatching mark distance from nucleus 4.78 m (I.C. 0.36 m, p 0.05 n = 30), increase width 1.46 m (I.C. 0.17 microm, p 0.05, n = 30) and diameter 14.28 m (IC 1.11 m, p 0.05, n = 30). The mean standard length of larvae at age 0 was 3.31 mm (I.C. 0.08 mm, p 0.05, n = 200). The identification of the hatching mark allows the exact calculation of the number of rings in larvae from the natural environment.

  6. Hybrid male sterility between the fresh- and brackish-water types of ninespine stickleback Pungitius pungitius (Pisces, Gasterosteidae).

    PubMed

    Takahashi, Hiroshi; Nagai, Terumi; Goto, Akira

    2005-01-01

    Two ecologically distinct forms, fresh- and brackish-water types, of ninespine stickleback co-exist in several freshwater systems on the coast of eastern Hokkaido. Recent genetic analyses of 13 allozyme loci revealed genetic separation between the two types even though their spawning grounds were in close proximity. On the other hand, there is only a small difference in mitochondrial DNA (mtDNA) sequence between the two types suggesting that they diverged quite recently or that mtDNA introgression occurred between them. To test for postzygotic reproductive isolating mechanisms and hybrid mediated gene flow, we examined the viability and reproductive performance of reciprocal F1 hybrids. The hybrids grew to the adult size normally and both sexes expressed secondary sexual characters in the reciprocal crosses. The female hybrids were reciprocally fertile, while the male hybrids were reciprocally sterile. Histological and flow-cytometric analyses of the hybrid testis revealed that the sterility pattern was classified as 'gametic sterility,' with gonads of normal size but abnormal spermatogenesis. To our knowledge, the present finding is a novel example of one sex hybrid sterility in the stickleback family (Gasterosteidae).

  7. Species composition and distribution of the Antarctic plunderfishes (Pisces, Artedidraconidae) from the Ross Sea off Victoria Land

    NASA Astrophysics Data System (ADS)

    La Mesa, Mario; Cattaneo-Vietti, Riccardo; Vacchi, Marino

    2006-04-01

    Among the notothenioid fish, the Antarctic plunderfishes (family Artedidraconidae) are a poorly known component of the bottom fauna of the continental shelf despite their relative importance. The family is composed of 25 small- to medium-sized endemic species and four genera, Artedidraco, Dolloidraco, Histiodraco and Pogonophryne, which are the most benthic and sedentary of the notothenioid fish. In the framework of "Victoria Land Transect Project", several samples of plunderfishes were collected by means of an Agassiz trawl. Sampling activities were carried out between 100 and 500 m depth in five sites over nearly 4° latitude off Victoria Land. Overall, trawling yielded 80 specimens of plunderfish, including all species of Artedidraco reported from the Ross Sea, i.e. Artedidraco glareobarbatus, A. loennbergi, A. orianae, A. shackletoni and A. skottsbergi, and the monotypic genus Histiodraco. The use of multivariate statistical analyses on catch data indicated sampling site as the main factor affecting species composition. Histiodraco velifer and A. skottsbergi were caught almost exclusively in the southernmost sites, characterizing the artedidraconid fauna of Cape Russell. A. orianae was sampled only in the northernmost sites, such as Cape Adare and Hallett Peninsula. A. loennbergi appeared to be a ubiquitous species, whereas A. glareobarbatus was caught only at the Hallett Peninsula. Plunderfishes showed a particular distribution pattern in relation to depth as well. A. glareobarbatus was the shallowest species, being sampled within 100 m. A. orianae and A. shackletoni showed a similar distribution, being caught mostly at 100-200 m, whereas A. skottsbergi was mainly sampled at 200-300 m. H. velifer was caught in a wide depth range, but mostly in deeper waters (400 m). A. loennbergi was eurybathic, showing a wider depth distribution than other species. Univariate measures of diversity indicated Cape Adare as the poorer site in terms of species richness and diversity. Number of species, diversity and equitability were quite similar off Hallett Peninsula and Cape Russell, indicating the absence of a latitudinal trend. Generally, all univariate indices decreased from shallow (100 m) to deep waters (500 m).

  8. Seasonal and ontogenetic changes modulate oxygen consumption and antioxidant defenses in the cutlassfish Trichiurus lepturus (Pisces, Trichiuridae).

    PubMed

    Wilhelm-Filho, Danilo; Fraga, César G; Boveris, Alberto

    2017-09-01

    Several oxidative stress markers and liver oxygen consumption were measured in different tissues of the marine fish Trichiurus lepturus in late summer and late winter, as well as in juveniles and adult females. Oxygen consumption in liver, superoxide dismutase (SOD) and catalase (CAT) activity in liver, red cells, lens and roe, vitamin E, ubiquinol 10 , β-carotene in liver, red cells, and roe, as well as contents of reduced glutathione (GSH) and lipoperoxidation (TBARS) in red cells were evaluated. Regarding ontogeny, compared to adult fish, juveniles showed significant higher SOD activity in liver and lens, as well as higher liver contents of vitamin E. In contrast, adult females showed higher contents of vitamin E in roe, ubiquinol 10 in liver and roe, and higher GSH levels in red cells, while the other markers remained unchanged. Regarding seasonal changes, no differences were detected in adult females for liver CAT and ubiquinol 10 , CAT in roe, vitamin E in roe and in red cells, liver and red cell ubiquinol 10 , and in GSH in red cells. However, and coinciding with the spawning period of late summer, liver oxygen consumption, SOD and CAT activity and ubiquinol 10 contents in roe and SOD activity in red cells, and red cell TBARS contents were higher compared to late winter. These temporal antioxidant adjustments of Trichiurus lepturus seem to be parallel to the higher oxygen consumption typical of juvenile forms and also to the intense spawning and foraging activities of adult females in late summer. Copyright © 2017. Published by Elsevier Inc.

  9. The Mugil curema species complex (Pisces, Mugilidae): a new karyotype for the Pacific white mullet mitochondrial lineage

    PubMed Central

    Nirchio, Mauro; Oliveira, Claudio; Siccha-Ramirez, Zoila R.; de Sene, Viviani F.; Sola, Luciana; Milana, Valentina; Rossi, Anna Rita

    2017-01-01

    Abstract Recent molecular phylogenetic analyses have shown that the Mugil curema Valenciennes, 1836 species complex includes M. incilis Hancock, 1830, M. thoburni (Jordan & Starks, 1896) and at least four “M. curema” mitochondrial lineages, considered as cryptic species. The cytogenetic data on some representatives of the species complex have shown a high cytogenetic diversity. This research reports the results of cytogenetic and molecular analyses of white mullet collected in Ecuador. The analyzed specimens were molecularly assigned to the Mugil sp. O, the putative cryptic species present in the Pacific Ocean and showed a 2n = 46 karyotype, which is composed of 2 metacentric and 44 subtelocentric/acrocentric chromosomes. This karyotype is different from the one described for M. incilis (2n = 48) and from those of the two western Atlantic lineages Mugil curema (2n = 28), and Mugil margaritae (2n = 24). Data suggest the need for a morphological analysis to assign a species name to this Pacific lineage. PMID:28919961

  10. The Mugil curema species complex (Pisces, Mugilidae): a new karyotype for the Pacific white mullet mitochondrial lineage.

    PubMed

    Nirchio, Mauro; Oliveira, Claudio; Siccha-Ramirez, Zoila R; de Sene, Viviani F; Sola, Luciana; Milana, Valentina; Rossi, Anna Rita

    2017-01-01

    Recent molecular phylogenetic analyses have shown that the Mugil curema Valenciennes, 1836 species complex includes M. incilis Hancock, 1830, M. thoburni (Jordan & Starks, 1896) and at least four " M. curema " mitochondrial lineages, considered as cryptic species. The cytogenetic data on some representatives of the species complex have shown a high cytogenetic diversity. This research reports the results of cytogenetic and molecular analyses of white mullet collected in Ecuador. The analyzed specimens were molecularly assigned to the Mugil sp. O, the putative cryptic species present in the Pacific Ocean and showed a 2n = 46 karyotype, which is composed of 2 metacentric and 44 subtelocentric/acrocentric chromosomes. This karyotype is different from the one described for M. incilis (2n = 48) and from those of the two western Atlantic lineages Mugil curema (2n = 28), and Mugil margaritae (2n = 24). Data suggest the need for a morphological analysis to assign a species name to this Pacific lineage.

  11. Integrative taxonomy of Anisakidae and Raphidascarididae (Nematoda) in Paralichthys patagonicus and Xystreurys rasile (Pisces: Teleostei) from Brazil.

    PubMed

    Fonseca, Michelle Cristie Gonçalves da; Knoff, Marcelo; Felizardo, Nilza Nunes; Di Azevedo, Maria Isabel N; Torres, Eduardo José Lopes; Gomes, Delir Corrêa; Iñiguez, Alena Mayo; São Clemente, Sérgio Carmona de

    2016-10-17

    Thirty-six Paralichthys patagonicus and 30 Xystreurys rasile were collected in the state of Rio de Janeiro, Brazil to investigate the presence of anisakid and raphidascaridid nematodes. Anisakis typica, Terranova sp., Contracaecum sp., Hysterothylacium deardorffoverstreetorum, and Raphidascaris sp. were identified using integrative taxonomy of morphological and genetic data. Morphological and morphometric analysis was conducted using bright field microscopy with scanning electron microscopy for topographic characterization of the cuticular surface. Phylogenetic analysis, using ITS and cox2 molecular targets, clearly demonstrated the species identification of A. typica and H. deardorffoverstreetorum and the high diversity of H. deardorffoverstreetorum. This is the first report of A. typica, H. deardorffoverstreetorum, and Raphidascaris sp. parasitizing P. patagonicus and X. rasile. Copyright © 2016 Elsevier B.V. All rights reserved.

  12. A new species of Trimma (Pisces; Gobiidae) from the South-West Islands of Palau, western Pacific Ocean.

    PubMed

    Winterbottom, Richard

    2018-01-09

    A new species of Trimma is described from South-West Islands of Palau. Trimma hamartium n. sp. lacks scales on the cheeks and opercle, has 8-9 scales in the predorsal midline, 17-19 pectoral-fin rays with 5-10 branched rays in the middle of the fin, an unbranched 5th pelvic-fin ray that is 51-64% the length of the 4th ray, 17-19 gill rakers on the outer surface of the first gill arch, an U-shaped interorbital trench with a narrow, slit-like postorbital trench ending at the last papilla in row p, and has 6 papillae in row c beneath the eye. When freshly collected, the species is very similar in appearance to T. preclarum, with which it is syntopic at three of the more northern islands of the South-West Islands.

  13. Different computer-assisted sperm analysis (CASA) systems highly influence sperm motility parameters.

    PubMed

    Boryshpolets, S; Kowalski, R K; Dietrich, G J; Dzyuba, B; Ciereszko, A

    2013-10-15

    In this study, we examined different computer-assisted sperm analysis (CASA) systems (CRISMAS, Hobson Sperm Tracker, and Image J CASA) on the exact same video recordings to evaluate the differences in sperm motility parameters related to the specific CASA used. To cover a wide range of sperm motility parameters, we chose 12-second video recordings at 25 and 50 Hz frame rates after sperm motility activation using three taxonomically distinct fish species (sterlet: Acipenser ruthenus L.; common carp: Cyprinus carpio L.; and rainbow trout: Oncorhynchus mykiss Walbaum) that are characterized by essential differences in sperm behavior during motility. Systematically higher values of velocity and beat cross frequency (BCF) were observed in video recordings obtained at 50 Hz frame frequency compared with 25 Hz for all three systems. Motility parameters were affected by the CASA and species used for analyses. Image J and CRISMAS calculated higher curvilinear velocity (VCL) values for rainbow trout and common carp at 25 Hz frequency compared with the Hobson Sperm Tracker, whereas at 50 Hz, a significant difference was observed only for rainbow trout sperm recordings. No significant difference was observed between the CASA systems for sterlet sperm motility at 25 and 50 Hz. Additional analysis of 1-second segments taken at three time points (1, 6, and 12 seconds of the recording) revealed a dramatic decrease in common carp and rainbow trout sperm speed. The motility parameters of sterlet spermatozoa did not change significantly during the 12-second motility period and should be considered as a suitable model for longer motility analyses. Our results indicated that the CASA used can affect motility results even when the same motility recordings are used. These results could be critically altered by the recording quality, time of analysis, and frame rate of camera, and could result in erroneous conclusions. Copyright © 2013 Elsevier Inc. All rights reserved.

  14. Life history of the sea lamprey of Cayugaf Lake, New York

    USGS Publications Warehouse

    Wigley, Roland L.

    1959-01-01

    A life history study of the sea lamprey, Petromyson marinus Linnaeus, in Cayuga Lake, N.Y., was conducted during 1950, 1951, and 1952. One of the major objectives was to obtain biological data concerning this endemic stock of sea lampreys for comparison with the newly established stocks in the Great Lakes. Sexually mature sea lampreys captured on their spawning migration in Cayuga Inlet were the basis of much of this study. Such items as meristic counts, body proportions, body color, sex ratios, lengths and weights, fecundity, rate of upstream travel, effect of dams in retarding upstream movement, nesting habits, parasites, predators, estimates of abundance, and morphological changes were based on mature upstream migrants. Sea lampreys were procured by weir and trap operations and captured by hand. Tagging and marking' programs each spring made it possible to determine movements and morphological changes of individual lampreys, in addition to estimating the number of upstream migrants. Growth of parasitic-phase sea lampreys was estimated from measurements of specimens captured in Cayuga Inlet and Cayuga Lake proper. The incubation period of lamprey eggs and the habits of ammocoetes and transforming lampreys were ascertained from specimens kept in hatchery troughs and raceways. Length-frequency and weight-frequency distributions, together with the length-weight regression, of ammocoetes from Cayuga Inlet were utilized for estimating the duration of their larval life. Lake trout, Salvelinus n. namayc"Ush (Walbaum), from Cayuga Lake and Seneca Lake were the subject of an inquiry into the effects of sea lamprey attacks. Incidence of sea lamprey attacks on the white sucker, Catosto7llus c. commerson/: (LacepMe), was investigated. Three methods are suggested for reducing the number of sea lampreys in Cayuga Lake.

  15. Identification of differentially expressed genes of brown trout (Salmo trutta) and rainbow trout (Oncorhynchus mykiss) in response to Tetracapsuloides bryosalmonae (Myxozoa).

    PubMed

    Kumar, Gokhlesh; Abd-Elfattah, Ahmed; El-Matbouli, Mansour

    2015-03-01

    Tetracapsuloides bryosalmonae Canning et al., 1999 (Myxozoa) is the causative agent of proliferative kidney disease in various species of salmonids in Europe and North America. We have shown previously that the development and distribution of the European strain of T. bryosalmonae differs in the kidney of brown trout (Salmo trutta) Linnaeus, 1758 and rainbow trout (Oncorhynchus mykiss) Walbaum, 1792, and that intra-luminal sporogonic stages were found in brown trout but not in rainbow trout. We have now compared transcriptomes from kidneys of brown trout and rainbow trout infected with T. bryosalmonae using suppressive subtractive hybridization (SSH). The differentially expressed transcripts produced by SSH were cloned, transformed, and tested by colony PCR. Differential expression screening of PCR products was validated using dot blot, and positive clones having different signal intensities were sequenced. Differential screening and a subsequent NCBI-BLAST analysis of expressed sequence tags revealed nine clones expressed differently between both fish species. These differentially expressed genes were validated by quantitative real-time PCR of kidney samples from both fish species at different time points of infection. Expression of anti-inflammatory (TSC22 domain family protein 3) and cell proliferation (Prothymin alpha) genes were upregulated significantly in brown trout but downregulated in rainbow trout. The expression of humoral immune response (immunoglobulin mu) and endocytic pathway (Ras-related protein Rab-11b) genes were significantly upregulated in rainbow trout but downregulated in brown trout. This study suggests that differential expression of host anti-inflammatory, humoral immune and endocytic pathway responses, cell proliferation, and cell growth processes do not inhibit the development of intra-luminal sporogonic stages of the European strain of T. bryosalmonae in brown trout but may suppress it in rainbow trout.

  16. Toxicity of organic selenium in the diet to chinook salmon

    USGS Publications Warehouse

    Hamilton, Steven J.; Buhl, Kevin J.; Faerber, Neil L.; Bullard, Fern A.; Wiedmeyer, Raymond H.

    1990-01-01

    The toxicity of two organoselenium diets was evaluated in 90- to 120-d partial life cycle tests with two life stages of chinook salmon (Oncorhynchus tshawytscha Walbaum). One of the diets contained fish meal made from high-selenium mosquitofish (Gambusia affinis Baird and Girard) collected from the selenium-laden San Luis Drain, California (here termed SLD diet) and the other contained meal made from low-selenium mosquitofish (collected from a reference site) fortified with selenomethionine. A 90-d study was conducted with swim-up larvae in a water-simulating dilution of San Luis Drain water in a standardized fresh water; and a 120-d study was conducted with fingerlings 70-mm long in a water of similar quality but prepared with a standardized brackish water. After 90 d of exposure in the freshwater study, survival was reduced in fish fed ≥9.6 μg Se/g of either diet, and growth was reduced in fish fed ≥5.3 μg Se/g of SLD diet or ≥18.2 μg Se/g of selenomethionine diet. Reduced fish growth, whole-body concentrations of selenium and survival were strongly correlated to concentrations of selenium in both diets. After 120 d of exposure in the brackish-water study, survival was unaffected but growth was reduced in fish fed ≥18.2 μg Se/g of SLD diet or 35.4 μg Se/g of selenomethionine diet. After 120 d of dietary exposure, survival during a 10-d seawater challenge test was reduced in fish fed 35.4 μg Se/g of either diet. In this second dietary study, concentration—response relations were observed in both dietary treatments between the dietary concentrations of selenium and all three characteristics — fish growth, whole-body concentrations of selenium and survival in seawater.

  17. Species-specific elimination of polychlorinated biphenyls in estuarine animals and its impact on residue patterns.

    PubMed

    Goerke, H; Weber, K

    2001-03-01

    Elimination kinetics of tetra-, penta- and hexachlorobiphenyls (IUPAC Nos. 44, 52, 87, 95, 101, 153) were investigated by laboratory experiments in three species of different phyla: Nereis diversicolor (Polychaeta), Palaemon longirostris (Crustacea) and Platichthys flesus (Pisces). Half-lives were species-specific and structure-dependent. Palaemon longirostris eliminated all components fastest. N. diversicolor was faster than Platichthys flesus except for components 95 and 153. Contrary to the fish species, the two invertebrates contained significant amounts of polar transformation products of No. 52, which had been applied as 14C labelled. Therefore, the faster elimination by Palaemon longirostris and N. diversicolor was assumed to be generally due to increased biotransformation. Elimination was in accordance with polychlorinated biphenyl (PCB) residue patterns obtained from field samples of the species. Congeners with vicinal H atoms in m,p positions were under-represented in Palaemon longirostris and so were congeners with > or = 7 Cl in N. diversicolor, while the PCB residue pattern in Platichthys flesus was similar to that of Clophen A60. By comparing percentages of the experimental congeners in sigma PCB and their elimination half-lives in the three species, it was revealed that residue patterns were also influenced by species-dependent uptake, e.g. feeding habits. Extractable organic matter-based sigma PCB levels increased with trophic levels of the three species.

  18. 75 FR 77229 - Federal Requirements Under the Underground Injection Control (UIC) Program for Carbon Dioxide (CO2

    Federal Register 2010, 2011, 2012, 2013, 2014

    2010-12-10

    ...This action finalizes minimum Federal requirements under the Safe Drinking Water Act (SDWA) for underground injection of carbon dioxide (CO2) for the purpose of geologic sequestration (GS). GS is one of a portfolio of options that could be deployed to reduce CO2 emissions to the atmosphere and help to mitigate climate change. This final rule applies to owners or operators of wells that will be used to inject CO2 into the subsurface for the purpose of long-term storage. It establishes a new class of well, Class VI, and sets minimum technical criteria for the permitting, geologic site characterization, area of review (AoR) and corrective action, financial responsibility, well construction, operation, mechanical integrity testing (MIT), monitoring, well plugging, post-injection site care (PISC), and site closure of Class VI wells for the purposes of protecting underground sources of drinking water (USDWs). The elements of this rulemaking are based on the existing Underground Injection Control (UIC) regulatory framework, with modifications to address the unique nature of CO2 injection for GS. This rule will help ensure consistency in permitting underground injection of CO2 at GS operations across the United States and provide requirements to prevent endangerment of USDWs in anticipation of the eventual use of GS to reduce CO2 emissions to the atmosphere and to mitigate climate change.

  19. Phylogeography in Galaxias maculatus (Jenyns, 1848) along Two Biogeographical Provinces in the Chilean Coast

    PubMed Central

    González-Wevar, Claudio A.; Salinas, Pilar; Hüne, Mathias; Segovia, Nicolás I.; Vargas-Chacoff, Luis; Astorga, Marcela; Cañete, Juan I.; Poulin, Elie

    2015-01-01

    Major geologic and climatic changes during the Quaternary exerted a major role in shaping past and contemporary distribution of genetic diversity and structure of aquatic organisms in southern South America. In fact, the northern glacial limit along the Pacific coast, an area of major environmental changes in terms of topography, currents, and water salinity, represents a major biogeographic transition for marine and freshwater species. We used mitochondrial DNA sequences (D-loop) to investigate the consequences of Quaternary glacial cycles over the pattern of genetic diversity and structure of G. maculatus (Pisces: Galaxiidae) along two biogeographical provinces in the Chilean coast. Extreme levels of genetic diversity and strong phylogeographic structure characterize the species suggesting a low amount of influence of the last glacial cycle over its demography. However, we recognized contrasting patterns of genetic diversity and structure between main biogeographical areas here analyzed. Along the Intermediate Area (38°–41° S) each estuarine population constitutes a different unit. In contrast, Magellanic populations (43°–53° S) exhibited low levels of genetic differentiation. Contrasting patterns of genetic diversity and structure recorded in the species between the analyzed biogeographic areas are consistent with the marked differences in abiotic factors (i.e., different coastal configurations, Quaternary glacial histories, and oceanographic regimes) and to inherent characteristics of the species (i.e., salt-tolerance, physiology, and reproductive behavior). PMID:26161896

  20. Star-Hopping

    NASA Astrophysics Data System (ADS)

    Garfinkle, Robert A.

    1997-07-01

    Introduction; Preface; Acknowledgements; 1. How to use this book and what you are going to see; 2. How the sky works, determining your field of view, observing tips and how to navigate in the night sky; 3. January - Taurus and Orion: the bull and hunter; 4. February - Canis Minor, Canis Major, and Puppis: dog days in February and Jason's Argo; 5. March - Cancer, Leo, and Corvus: a crab, the king of the beasts, and a crow; 6. April - Ursa Major: a dipper round tripper; 7. May - Coma Berenices and Virgo: the sparkling hair of Berenice and the wheat maiden and her bushel of galaxies; 8. June - Libra and Lupus: the balance scales and the wolf; 9. July - Scorpius, Sagittarius, and Scutum: the scorpion, archer, and shield of John Sobieski; 10. August - Draco: following the trail of the dragon; 11. September - Cygnus, Lyra, Vulpecula, and Sagitta: the swan, lyre, fox, and arrow; 12. October - Andromeda and Perseus: the chained lady and her rescuer; 13. November - Cepheus and Cassiopeia: the king and queen of Joppa; 14. December - Pisces, Triangulum, and Aries: of fishes, a triangle, and a ram; 15. Messier Marathon, a sundown to sunup hop across the skies; Appendix A: Classification tables; Appendix B: The constellations; Appendix C: The Greek alphabet; Appendix D: Decimalization of the day; Glossary; Bibliography; Index.

  1. DOE Office of Scientific and Technical Information (OSTI.GOV)

    Johnson, GE; Diefenderfer, HL

    The Estuary/Ocean Subgroup (EOS) is part of the research, monitoring, and evaluation (RME) effort that the Action Agencies (Bonneville Power Administration (BPA), U.S. Army Corps of Engineers, U.S. Bureau of Reclamation) developed in response to obligations arising from the Endangered Species Act as applied to operation of the Federal Columbia River Power System (FCRPS). The goal of the EOS project is to facilitate activities of the estuary/ocean RME subgroup as it coordinates design and implementation of federal RME in the lower Columbia River and estuary. In fiscal year 2008 (FY08), EOS project accomplishments included (1) subgroup meetings; (2) participation inmore » the estuary work group of the Pacific Northwest Aquatic Monitoring Partnership; (3) project management via BPA's project tracking system, Pisces; (4) quarterly project status reports; and (5) a major revision to the Estuary RME document and its subsequent regional release (new version January 2008). Many of the estuary RME recommendations in this document were incorporated into the Biological Opinion on FCRPS operations (May 2008). In summary, the FY08 EOS project resulted in expanded, substantive coordination with other regional RME forums, a new version of the federal Estuary RME program document, and implementation coordination. This annual report is a FY08 deliverable for the project titled Facilitation of the Estuary/Ocean Subgroup.« less

  2. DOE Office of Scientific and Technical Information (OSTI.GOV)

    Johnson, Gary E.; Diefenderfer, Heida L.

    The Estuary/Ocean Subgroup (EOS) is part of the research, monitoring, and evaluation (RME) effort that the Action Agencies (Bonneville Power Administration, U.S. Army Corps of Engineers, U.S. Bureau of Reclamation) developed in response to obligations arising from the Endangered Species Act as applied to operation of the Federal Columbia River Power System (FCRPS). The goal of the EOS project is to facilitate activities of the estuary/ocean RME subgroup as it coordinates design and implementation of federal RME in the lower Columbia River and estuary. In fiscal year 2008 (FY08), EOS project accomplishments included 1) subgroup meetings; 2) participation in themore » estuary work group of the Pacific Northwest Aquatic Monitoring Partnership; 3) project management via the project tracking system, Pisces; 4) quarterly project status reports; and 5) a major revision to the Estuary RME document and its subsequent regional release (new version January 2008). Many of the estuary RME recommendations in this document were incorporated into the Biological Opinion on hydrosystem operations (May 2008). In summary, the FY08 EOS project resulted in expanded, substantive coordination with other regional RME forums, a new version of the federal Estuary RME program document, and implementation coordination. This annual report is a FY08 deliverable for the project titled Facilitation of the Estuary/Ocean Subgroup.« less

  3. DOE Office of Scientific and Technical Information (OSTI.GOV)

    Johnson, Gary E.

    This annual report is a deliverable for fiscal year 2006 (FY06) for Project 2002-077-00, Facilitation of the Estuary/Ocean Subgroup (EOS). The EOS is part of the research, monitoring, and evaluation (RME) effort the Action Agencies (Bonneville Power Administration, U.S. Army Corps of Engineers, U.S. Bureau of Reclamation) developed in response to the 2000 and 2004 Biological Opinions on operation of the Federal Columbia River Power System. The goal of the EOS project is to facilitate activities of the estuary/ocean RME subgroup as it coordinates implementation of the Estuary RME Plan. In FY06, EOS project accomplishments included: 1) subgroup meetings; 2)more » participation in the estuary work group of the Pacific Northwest Aquatic Monitoring Partnership; 3) project management via the project tracking system, PISCES; 4) quarterly project status reports; and 5) a major revision to the Estuary RME Plan (new version May 2006) based on comments by EOS members, the Independent Scientific Review Panel, and other reviewers. In the context of uncertainty about the direction of the federal RME due to litigation on the FCRPS Biological Opinion, FY06 activities for the EOS project resulted in expanded substantive coordination with other regional RME forums, project tracking infrastructure, and a new version of the Estuary RME Plan.« less

  4. Electrode contact configuration and energy consumption in spinal cord stimulation.

    PubMed

    de Vos, Cecile C; Hilgerink, Marjolein P; Buschman, Hendrik P J; Holsheimer, Jan

    2009-12-01

    To test the hypothesis that in spinal cord stimulation, an increase in the number of cathodes increases the energy per pulse, contrary to an increase in the number of anodes, which decreases energy consumption per pulse. Patients with an Itrel III (7425; Medtronic, Inc., Minneapolis, MN) implantable pulse generator and a Pisces-Quad (3487A; Medtronic, Inc.) implantable quadripolar lead were selected for this study. A set of 7 standard contact configurations was used for each patient. Resistor network models mimicking these configurations were constructed. The University of Twente's Spinal Cord Stimulation software was used to simulate the effect of these contact configurations on large spinal nerve fibers. To allow a comparison of the measured and modeled energy per pulse, all values were normalized. Both the empirical and the modeling results showed an increase in energy consumption with an increasing number of cathodes. Although the patient data with 1 and 2 cathodes did not differ significantly, energy consumption was significantly higher when 3 cathodes were used instead of 1 or 2 cathodes. The average energy consumption was significantly higher when bipolar stimulation was used instead of monopolar cathodal stimulation. An increasing number of anodes caused a decrease in energy consumption. When the paresthesia area can be covered with several configurations, it will be beneficial for the patient to program a configuration with 1 cathode and either no or multiple anodes.

  5. Choosing non-redundant representative subsets of protein sequence data sets using submodular optimization.

    PubMed

    Libbrecht, Maxwell W; Bilmes, Jeffrey A; Noble, William Stafford

    2018-04-01

    Selecting a non-redundant representative subset of sequences is a common step in many bioinformatics workflows, such as the creation of non-redundant training sets for sequence and structural models or selection of "operational taxonomic units" from metagenomics data. Previous methods for this task, such as CD-HIT, PISCES, and UCLUST, apply a heuristic threshold-based algorithm that has no theoretical guarantees. We propose a new approach based on submodular optimization. Submodular optimization, a discrete analogue to continuous convex optimization, has been used with great success for other representative set selection problems. We demonstrate that the submodular optimization approach results in representative protein sequence subsets with greater structural diversity than sets chosen by existing methods, using as a gold standard the SCOPe library of protein domain structures. In this setting, submodular optimization consistently yields protein sequence subsets that include more SCOPe domain families than sets of the same size selected by competing approaches. We also show how the optimization framework allows us to design a mixture objective function that performs well for both large and small representative sets. The framework we describe is the best possible in polynomial time (under some assumptions), and it is flexible and intuitive because it applies a suite of generic methods to optimize one of a variety of objective functions. © 2018 Wiley Periodicals, Inc.

  6. Wavefront control methods for high-contrast integral field spectroscopy

    NASA Astrophysics Data System (ADS)

    Groff, Tyler D.; Mejia Prada, Camilo; Cady, Eric; Rizzo, Maxime J.; Mandell, Avi; Gong, Qian; McElwain, Michael; Zimmerman, Neil; Saxena, Prabal; Guyon, Olivier

    2017-09-01

    Direct Imaging of exoplanets using a coronagraph has become a major field of research both on the ground and in space. Key to the science of direct imaging is the spectroscopic capabilities of the instrument, our ability to fit spectra, and understanding the composition of the observed planets. Direct imaging instruments generally use an integral field spectrograph (IFS), which encodes the spectrum into a two-dimensional image on the detector. This results in more efficient detection and characterization of targets, and the spectral information is critical to achieving detection limits below the speckle floor of the imager. The most mature application of these techniques is at more modest contrast ratios on ground-based telescopes, achieving approximately 5-6 orders of magnitude suppression. In space, where we are attempting to detect Earth-analogs, the contrast requirements are more severe and the IFS must be incorporated into the wavefront control loop to reach 1e-10 detection limits required for Earth-like planet detection. We present the objectives and application of IFS imagery for both a speckle control loop and post-processing of images. Results, tested methodologies, and the future work using the Coronagraphic High Angular Resolution Imaging Spectrograph (CHARIS) and the Prototype Imaging Spectrograph for Coronagraphic Exoplanet Studies (PISCES) at the JPL High Contrast Imaging Testbed are presented.

  7. Hydroxyl as a Tracer of Dark Gas in a Diffuse Molecular Cloud

    NASA Astrophysics Data System (ADS)

    White, Josh; Donate, Emmanuel; Magnani, Loris A.

    2017-06-01

    In an attempt to determine the extent of dark molecular gas at high Galactic latitudes, we have conducted a survey of OH at 18 cm in a region containing the diffuse molecular cloud MBM 53. Dark molecular gas is a term that refers to molecular hydrogen that is either difficult or impossible to detect by conventional spectroscopic means. While models of photo-dissociation regions predict that some molecular hydrogen is found under conditions where other species are too low in abundance to be detected by radio spectroscopy, recent estimates have predicted that as much dark molecular gas exists as that normally detected by CO(1-0) surveys. However, more sensitive surveys either in the CO(1-0) line or other tracers should detect some of this gas. We observed 44 lines of sight at 18 cm to see if very sensitive OH observations could detect some of the dark molecular gas in the Pegasus-Pisces region. Our data were taken with the 305 m Arecibo radiotelescope and have typical rms values of 6-7 mK. We compared our OH observations with the Georgia/Harvard-Smithsonian CfA high-latitude CO(1-0) survey. Of 8 OH detections at 1667 MHz, 5 were not detected by the CO survey and indicate that at least some of the dark molecular gas may be traced by sensitive OH observations.

  8. Protein Solvent-Accessibility Prediction by a Stacked Deep Bidirectional Recurrent Neural Network.

    PubMed

    Zhang, Buzhong; Li, Linqing; Lü, Qiang

    2018-05-25

    Residue solvent accessibility is closely related to the spatial arrangement and packing of residues. Predicting the solvent accessibility of a protein is an important step to understand its structure and function. In this work, we present a deep learning method to predict residue solvent accessibility, which is based on a stacked deep bidirectional recurrent neural network applied to sequence profiles. To capture more long-range sequence information, a merging operator was proposed when bidirectional information from hidden nodes was merged for outputs. Three types of merging operators were used in our improved model, with a long short-term memory network performing as a hidden computing node. The trained database was constructed from 7361 proteins extracted from the PISCES server using a cut-off of 25% sequence identity. Sequence-derived features including position-specific scoring matrix, physical properties, physicochemical characteristics, conservation score and protein coding were used to represent a residue. Using this method, predictive values of continuous relative solvent-accessible area were obtained, and then, these values were transformed into binary states with predefined thresholds. Our experimental results showed that our deep learning method improved prediction quality relative to current methods, with mean absolute error and Pearson's correlation coefficient values of 8.8% and 74.8%, respectively, on the CB502 dataset and 8.2% and 78%, respectively, on the Manesh215 dataset.

  9. Hiding in the night sky

    NASA Image and Video Library

    2016-04-04

    This striking NASA/ESA Hubble Space Telescope image captures the galaxy UGC 477, located just over 110 million light-years away in the constellation of Pisces (The Fish). UGC 477 is a low surface brightness (LSB) galaxy. First proposed in 1976 by Mike Disney, the existence of LSB galaxies was confirmed only in 1986 with the discovery of Malin 1. LSB galaxies like UGC 477 are more diffusely distributed than galaxies such as Andromeda and the Milky Way. With surface brightnesses up to 250 times fainter than the night sky, these galaxies can be incredibly difficult to detect. Most of the matter present in LSB galaxies is in the form of hydrogen gas, rather than stars. Unlike the bulges of normal spiral galaxies, the centres of LSB galaxies do not contain large numbers of stars. Astronomers suspect that this is because LSB galaxies are mainly found in regions devoid of other galaxies, and have therefore experienced fewer galactic interactions and mergers capable of triggering high rates of star formation. LSB galaxies such as UGC 477 instead appear to be dominated by dark matter, making them excellent objects to study to further our understanding of this elusive substance. However, due to an underrepresentation in galactic surveys — caused by their characteristic low brightness — their importance has only been realised relatively recently.

  10. Fish assemblages and environmental variables associated with hard-rock mining in the Coeur d'Alene River basin, Idaho

    USGS Publications Warehouse

    Maret, Terry R.; MacCoy, Dorene E.

    2002-01-01

    As part of the U.S. Geological Survey's National Water Quality Assessment Program, fish assemblages, environmental variables, and associated mine densities were evaluated at 18 test and reference sites during the summer of 2000 in the Coeur d'Alene and St. Regis river basins in Idaho and Montana. Multimetric and multivariate analyses were used to examine patterns in fish assemblages and the associated environmental variables representing a gradient of mining intensity. The concentrations of cadmium (Cd), lead (Pb), and zinc (Zn) in water and streambed sediment found at test sites in watersheds where production mine densities were at least 0.2 mines/km2 (in a 500-m stream buffer) were significantly higher than the concentrations found at reference sites. Many of these metal concentrations exceeded Ambient Water Quality Criteria (AWQC) and the Canadian Probable Effect Level guidelines for streambed sediment. Regression analysis identified significant relationships between the production mine densities and the sum of Cd, Pb, and Zn concentrations in water and streambed sediment (r2 = 0.69 and 0.66, respectively; P < 0.01). Zinc was identified as the primary metal contaminant in both water and streambed sediment. Eighteen fish species in the families Salmonidae, Cottidae, Cyprinidae, Catostomidae, Centrarchidae, and Ictaluridae were collected. Principal components analysis of 11 fish metrics identified two distinct groups of sites corresponding to the reference and test sites, predominantly on the basis of the inverse relationship between percent cottids and percent salmonids (r = -0.64; P < 0.05). Streams located downstream from the areas of intensive hard-rock mining in the Coeur d'Alene River basin contained fewer native fish and lower abundances as a result of metal enrichment, not physical habitat degradation. Typically, salmonids were the predominant species at test sites where Zn concentrations exceeded the acute AWQC. Cottids were absent at these sites, which

  11. Susceptibility of Representative Great Lakes Fish Species to the North Carolina Strain of Spring Viremia of Carp Virus (SVCV).

    PubMed

    Boonthai, Traimat; Loch, Thomas P; Standish, Isaac; Faisal, Mohamed

    2017-12-01

    Spring viremia of carp virus (SVCV) is a notifiable pathogen of the World Organization of Animal Health. Since SVCV was isolated in Lake Ontario in 2007, concern has grown about its spread in the Great Lakes basin and its potential negative impacts on fish species of importance in stock enhancement programs basinwide. The susceptibility of representative fish species from the families Cyprinidae (Fathead Minnow Pimephales promelas, Golden Shiner Notemigonus crysoleucas, Spotfin Shiner Cyprinella spiloptera, and Creek Chub Semotilus atromaculatus), Centrarchidae (Largemouth Bass Micropterus salmoides), Percidae (Walleye Sander vitreus), Salmonidae (Rainbow Trout Oncorhynchus mykiss), and Esocidae (Muskellunge Esox masquinongy) to SVCV was evaluated by experimental infection under laboratory conditions. Morbidity and mortality were recorded, and virus re-isolation, seminested reverse transcription PCR, and histopathological assessments were performed. Using intraperitoneal (i.p.) injection, Fathead Minnows and Golden Shiners were highly susceptible to SVCV (40-70% mortality). All dead or moribund and apparently healthy surviving Fathead Minnows and Golden Shiners were SVCV positive. The SVCV was also detected in challenged but healthy Spotfin Shiners (30%) and Creek Chub (5%). However, noncyprinid species exhibited no morbidity or mortality and were free of SVCV following an observation period of 30 d. In a follow-up experimental challenge, Fathead Minnows and Golden Shiners were SVCV challenged at 10 3 and 10 5 PFU/mL by means of waterborne immersion. After immersion, Fathead Minnows and Golden Shiners exhibited characteristic SVCV disease signs, but mortality was less (30% and 10% mortality, respectively) than that in fish with i.p. injections. The SVCV was detected in all mortalities and a subset of healthy Fathead Minnows and Golden Shiners. Necrotic changes were observed in the kidneys, liver, spleen, ovaries, and heart, and other histopathological lesions also

  12. Immunological cross-reactivity between four distant parvalbumins-Impact on allergen detection and diagnostics.

    PubMed

    Sharp, Michael F; Stephen, Juan N; Kraft, Lukas; Weiss, Thomas; Kamath, Sandip D; Lopata, Andreas L

    2015-02-01

    Fish are the largest and most diverse group of vertebrates. Fish are also a part of the eight food groups that cause the majority of IgE mediated food reactions. Detection tools for fish allergens are however limited due to the great diversity of fish species, despite fish allergy and its major allergen parvalbumin being well documented. The most commonly studied fish are frequently consumed in North America and Europe. However, much less is known about fish allergens in the Australasian region although fish is widely consumed in this region. A comprehensive phylogenetic analysis was performed of known parvalbumin amino acid sequences to determine possible candidate antigens for new cross-reactive antibodies to be used to detect most fish parvalbumins. Polyclonal rabbit antibodies were raised against parvalbumins from frequently consumed barramundi (Lates calcarifer), basa (Pangasius bocourti), pilchard (Sardinops sagax) and Atlantic salmon (Salmo salar). These were evaluated for cross-reactivity against a panel of 45 fish extracts (raw, heated and canned fish). Anti-barramundi parvalbumin proved to be the most cross-reactive antibody, detecting 87.5% of the 40 species analyzed, followed by anti-pilchard and anti-basa antibody. In contrast the anti-salmon antibody was very specific and only reacted to salmonidae and a few other fish. All analyzed fish species, except mahi mahi, swordfish, yellowfin tuna and all 5 canned fish had parvalbumin detected in raw extracts. However antibody reactivity to many fish was heat liable or susceptible to denaturation, demonstrating that some parvalbumins have most likely conformational epitopes, which lose antibody reactivity after heat treatment. We have demonstrated the generation of highly cross-reactive anti-parvalbumin antibodies that could be used for the detection of allergenic fish parvalbumin in contaminated food products. This cross-reactivity study thus shows processing of fish, especially canning, can have on impact

  13. Oral DNA vaccination of rainbow trout, Oncorhynchus mykiss (Walbaum), against infectious haematopoietic necrosis virus using PLGA [Poly(D,L-Lactic-Co-Glycolic Acid)] nanoparticles.

    PubMed

    Adomako, M; St-Hilaire, S; Zheng, Y; Eley, J; Marcum, R D; Sealey, W; Donahower, B C; Lapatra, S; Sheridan, P P

    2012-03-01

    A DNA vaccine against infectious haematopoietic necrosis virus (IHNV) is effective at protecting rainbow trout, Oncorhynchus mykiss, against disease, but intramuscular injection is required and makes the vaccine impractical for use in the freshwater rainbow trout farming industry. Poly (D,L-lactic-co-glycolic acid) (PLGA) is a U.S. Food and Drug Administration (FDA) approved polymer that can be used to deliver DNA vaccines. We evaluated the in vivo absorption of PLGA nanoparticles containing coumarin-6 when added to a fish food pellet. We demonstrated that rainbow trout will eat PLGA nanoparticle coated feed and that these nanoparticles can be detected in the epithelial cells of the lower intestine within 96 h after feeding. We also detected low levels of gene expression and anti-IHNV neutralizing antibodies when fish were fed or intubated with PLGA nanoparticles containing IHNV G gene plasmid. A virus challenge evaluation suggested a slight increase in survival at 6 weeks post-vaccination in fish that received a high dose of the oral vaccine, but there was no difference when additional fish were challenged at 10 weeks post-vaccination. The results of this study suggest that it is possible to induce an immune response using an orally delivered DNA vaccine, but the current system needs improvement. © 2012 Blackwell Publishing Ltd.

  14. The Hawai'i Undersea Research Laboratory: Applying Innovative Deep-sea Technologies Toward Research, Service, and Stewardship in Marine Protected Areas of the Pacific Region

    NASA Astrophysics Data System (ADS)

    Smith, J. R.

    2012-12-01

    The Hawai'i Undersea Research Laboratory (HURL) is the only U.S. deep submergence facility in the Pacific Rim tasked with supporting undersea research necessary to fulfill the mission, goals, and objectives of the National Oceanic and Atmospheric Administration (NOAA), along with other national interests of importance. Over 30 years of submersible operations have resulted in nearly 1900 dives representing 9300 hours underwater, and a benthic ecology database derived from in-house video record logging of over 125,000 entries based on 1100 unique deep-sea animal identifications in the Hawaiian Archipelago. As a Regional Center within the Office of Ocean Exploration and Research (OER), HURL conducts undersea research in offshore and nearshore waters of the main and Northwestern Hawaiian Islands and waters of the central, southern, and western Pacific. HURL facilities primarily support marine research projects that require data acquisition at depths greater than wet diving methods. These consist of the research vessel Ka'imikai-o-Kanaloa (KOK), human occupied submersibles Pisces IV and Pisces V (2000 m), a new remotely operated vehicle (6000 m), and a multibeam bathymetric sonar system (11,000 m). In addition, HURL has also supported AAUS compliant wet diving since 2003, including technical mixed gas/rebreather work. While ecosystem studies of island, atoll, and seamount flanks are the largest component of the HURL science program, many other thematic research areas have been targeted including extreme and unique environments, new resources from the sea, episodic events to long term changes, and the development of innovative technologies. Several examples of HURL's contributions to marine protected areas (MPAs) include: (a) A long term presence in the pristine ecosystems of the Papahānaumokuākea Marine National Monument in the Northwestern Hawaiian Islands. Researchers from National Marine Fisheries have used HURL assets to study endangered Hawaiian Monk Seal habitat

  15. Discoveries From the Cross-Disciplinary, Multi-Institutional South Seas Expedition from Hawaii to New Zealand and Back

    NASA Astrophysics Data System (ADS)

    Malahoff, A.; Wiltshire, J. C.; Smith, J. R.

    2005-12-01

    The Hawaii Undersea Research Laboratory organised an international research team to explore the chemistry, geology, biology, hydrothermal venting processes, mineral deposition, and biodiversity of seamounts extending south from Hawaii to New Zealand, including the submarine volcanoes of the Tonga-Kermadec Island Arc. Research team members came from a Consortium comprising of principal investigators from the NOAA Pacific Marine Environment Lab and VENTS program, the Inst of Geological and Nuclear Sciences and the National Inst of Water and Atmospheric Research both of New Zealand, the Univ of Kiel in Germany, the Univ of Mississippi, Univ of Hawaii, the NOAA Marine Fisheries Service, Scripps Institution of Oceanography, Univ of Oregon, Oregon State Univ, Stanford Univ, and the U.S. Fish and Wildlife Service. Funding came from the member organizations of the Consortium and the NOAA Office of Ocean Exploration and National Undersea Research Program. The expedition left Hawaii on 18 March 2005 and returned on 05 August, aboard the R/V Ka`imikai-o-Kanaloa with the submersibles Pisces IV and Pisces V and the ROV RCV-150. Sixty-one science dives were executed during the eight legs of the expedition. Twelve active volcanoes in the Samoa to New Zealand legs, one in the Samoan hot spot chain and the flanks of five islands and atolls on the legs between Samoa and Hawaii were investigated. Hundreds of specimens of new and unusual marine life, corals and other benthic organisms, extremophile micro- and macro-organisms, water samples for chemical analysis, polymetallic sulfides and rock samples were collected during the expedition. Unusual processes were observed at the Kermadec submarine volcanoes, including the oozing of liquid sulphur onto the seafloor and profuse carbon dioxide venting into seawater. Extensive submarine hydrothermal venting, black smoker activity and extraordinary chimney formations were studied in the caldera of Brothers Volcano. In addition, extensive

  16. Littorally adaptive? Testing the link between habitat, morphology, and reproduction in the intertidal sculpin subfamily Oligocottinae (Pisces: Cottoidea)

    PubMed Central

    Burns, Michael D.; López, J. Andrés

    2017-01-01

    While intertidal habitats are often productive, species-rich environments, they are also harsh and highly dynamic. Organisms that live in these habitats must possess morphological and physiological adaptations that enable them to do so. Intertidal fishes are generally small, often lack scales, and the diverse families represented in intertidal habitats often show convergence into a few general body shapes. However, few studies have quantified the relationship between phenotypes and intertidal living. Likewise, the diversity of reproductive traits and parental care in intertidal fishes has yet to be compared quantitatively with habitat. We examine the relationship of these characters in the sculpin subfamily Oligocottinae using a phylogenetic hypothesis, geometric morphometrics, and phylogenetic comparative methods to provide the first formal test of associations between fish phenotypes and reproductive characters with intertidal habitats. We show that the ability to live in intertidal habitats, particularly in tide pools, is likely a primitive state for Oligocottinae, with a single species that has secondarily come to occupy only subtidal habitats. Contrary to previous hypotheses, maximum size and presence of scales do not show a statistically significant correlation with depth. However, the maximum size for all species is generally small (250 mm or less) and all show a reduction in scales, as would be expected for an intertidal group. Also contrary to previous hypotheses, we show that copulation and associated characters are the ancestral condition in Oligocottinae, with copulation most likely being lost in a single lineage within the genus Artedius. Lastly, we show that body shape appears to be constrained among species with broader depth ranges, but lineages that occupy only a narrow range of intertidal habitats display novel body shapes, and this may be associated with habitat partitioning, particularly as it relates to the degree of wave exposure. PMID:28828246

  17. Littorally adaptive? Testing the link between habitat, morphology, and reproduction in the intertidal sculpin subfamily Oligocottinae (Pisces: Cottoidea).

    PubMed

    Buser, Thaddaeus J; Burns, Michael D; López, J Andrés

    2017-01-01

    While intertidal habitats are often productive, species-rich environments, they are also harsh and highly dynamic. Organisms that live in these habitats must possess morphological and physiological adaptations that enable them to do so. Intertidal fishes are generally small, often lack scales, and the diverse families represented in intertidal habitats often show convergence into a few general body shapes. However, few studies have quantified the relationship between phenotypes and intertidal living. Likewise, the diversity of reproductive traits and parental care in intertidal fishes has yet to be compared quantitatively with habitat. We examine the relationship of these characters in the sculpin subfamily Oligocottinae using a phylogenetic hypothesis, geometric morphometrics, and phylogenetic comparative methods to provide the first formal test of associations between fish phenotypes and reproductive characters with intertidal habitats. We show that the ability to live in intertidal habitats, particularly in tide pools, is likely a primitive state for Oligocottinae, with a single species that has secondarily come to occupy only subtidal habitats. Contrary to previous hypotheses, maximum size and presence of scales do not show a statistically significant correlation with depth. However, the maximum size for all species is generally small (250 mm or less) and all show a reduction in scales, as would be expected for an intertidal group. Also contrary to previous hypotheses, we show that copulation and associated characters are the ancestral condition in Oligocottinae, with copulation most likely being lost in a single lineage within the genus Artedius . Lastly, we show that body shape appears to be constrained among species with broader depth ranges, but lineages that occupy only a narrow range of intertidal habitats display novel body shapes, and this may be associated with habitat partitioning, particularly as it relates to the degree of wave exposure.

  18. [Oropharyngeal morphology and food habits of Micropogonias furnieri (Pisces: Sciaenidae) in the North coast of Estado Sucre, Venezuela].

    PubMed

    Ruiz, L J; Prieto, A; Lemus, M

    2001-01-01

    Morphology of the mandibular and pharyngeal region, and the feeding habits of Micropogonias furnieri were examined in 256 male and female specimens, between 28.7 and 54.3 cm total length, collected around Morro Puerto Santo, in northeast Sucre State, Venezuela (10 degrees 45'00" N-63 degrees 8'0" W), from May 1989 to April 1990. Micropogonias furnieri has a small ventral mouth; protrusible premaxillary and dentary; first branchial arches with 21 to 27 gill rakers, generally 24 to 25; and 7 to 11 pyloric caecae. The index of vacuity was low, with mean value of 7.00%. The mean intestinal index was 0.72, indicative of carnivorous species. Analysis of frequency of occurrence, indicates preference for crustaceans (45.70%), mainly crabs (34.90%), followed by polychaetes (28.00%), fishes (11.41%) and occasionally mollusks and echinoderms (4.0 and 3.9%, respectively). The diet of this species did not vary with sex.

  19. Genetic evidence and new morphometric data as essential tools to identify the Patagonian seahorse Hippocampus patagonicus (Pisces, Syngnathidae).

    PubMed

    González, R; Dinghi, P; Corio, C; Medina, A; Maggioni, M; Storero, L; Gosztonyi, A

    2014-02-01

    A genetic study to support morphometric analyses was used to improve the description and validate the Patagonian seahorse Hippocampus patagonicus (Syngnathidae) on the basis of a large number of specimens collected in the type locality (San Antonio Bay, Patagonia, Argentina). DNA sequence data (from the cytochrome b region of the mitochondrial genome) were used to differentiate this species from its relatives cited for the west Atlantic Ocean. Both phylogenetic and genetic distance analyses supported the hypothesis that H. patagonicus is a species clearly differentiated from others, in agreement with morphometric studies. Hippocampus patagonicus can be distinguished from Hippocampus erectus by the combination of the following morphometric characteristics: (1) in both sexes and all sizes of H. patagonicus, the snout length is always less than the postorbital length, whereas the snout length of H. erectus is not shorter than the postorbital length in the largest specimens; (2) in both sexes of H. patagonicus, the trunk length:total length (LTr :LT ) is lower than in H. erectus (in female H. patagonicus: 0·27-0·39, H. erectus: 0·36-0·40 and in male H. patagonicus: 0·24-0·34, H. erectus: 0·33-0·43) and (3) in both sexes, tail length:total length (LTa :LT ) in H. patagonicus is larger than in H. erectus (0·61-0·78 v. 0·54-0·64). © 2014 The Fisheries Society of the British Isles.

  20. The proteolytic digestive activity and growth during ontogeny of Parachromis dovii larvae (Pisces: Cichlidae) using two feeding protocols.

    PubMed

    Quirós Orlich, José R; Valverde Chavarría, Silvia; Ulloa Rojas, Juan B

    2014-08-01

    The proteolytic digestive activity and growth of Parachromis dovii larvae during the ontogeny were evaluated in a recirculation system using two feeding strategies during a 28-day period. Larvae were reared using two feeding protocols (three replicates each): (A) Artemia nauplii (at satiation), fed from exogenous feeding [8 days after hatching (DAH)] until 15 DAH followed by nauplii substitution by formulated feed (20% day(-1)) until 20 DAH and then formulated feed until 28 DAH; (B) formulated feed (100 % BW daily) from exogenous feeding until 28 DAH. Levels of acid (pepsin type) and alkaline digestive proteases as well as growth and survival of larvae were measured along the feeding period. Survival was high and similar between treatments: 98.9 ± 0.0 for Artemia, 97.3 ± 0.0% for formulated feed. The specific growth rate for length and weight was higher in larvae fed with Artemia nauplii than in larvae reared with formulated feed: 3.4 ± 0.1 versus 1.8 ± 0.1% day(-1) for body length (P = 0.009) and 12.2 ± 0.1 versus 6.5 ± 0.3% day(-1) for body weight (P = 0.002). The acid and alkaline proteolytic activity was detected, in both treatments, from the beginning of the experiment, at 8 DAH. The total enzymatic activity (U larva(-1)) for acid and alkaline proteases was higher in larvae reared with Artemia after 12 DAH, whereas the specific enzymatic activity was similar for both enzyme types in the two treatments. The results suggest that P. dovii larvae were capable to digest formulated diets from the beginning of exogenous feeding and that they could be reared with formulated feeds. However, the formulated feed used should be nutritionally improved because of the poor growth obtained in this research.

  1. Can the name Mugil cephalus (Pisces: Mugilidae) be used for the species occurring in the north western Atlantic?

    PubMed

    Pacheco-Almanzar, Eloísa; Simons, James; Espinosa-Pérez, Héctor; Chiappa-Carrara, Xavier; Ibáñez, Ana L

    2016-05-09

    Menezes et al. (2010) show that Mugil cephalus Linnaeus, 1758 is different from Mugil liza Valenciennes 1836, the latter being the mullet found along the Atlantic coast of South America. They also suggest that individuals identified as M. cephalus from the northwest Atlantic could represent a population of M. liza in this region, since they doubt the presence of M. cephalus in waters colder than the ones of the West Indies. In order to clarify the presence of M. cephalus in the northwest Atlantic, this study compares meristic and morphometric measurements of M. cephalus and M. liza from the Gulf of Mexico with those obtained by Menezes et al. (2010) for M. liza from South America and for M. cephalus in the Mediterranean Sea. Results show that there are differences in both morphometric and meristic data between the two species. The morphometric measure that differentiates these species is the distance from the snout to the dorsal fin, which is positioned backwards in M. liza compared with M. cephalus. The body width is consistently greater in M. cephalus than M. liza. The meristic character that discriminates between both species is the number of scales in the longitudinal series that, in M. cephalus, ranges from 38 to 43 while in M. liza between 32 to 39. The information presented in this work confirms the presence of M. cephalus in the Gulf of Mexico and the sympatric presence of M. liza is established, even if its abundance is quite low.

  2. Evidence of shallow mitochondrial divergence in the slender armorhead, Pentaceros wheeleri (Pisces, Pentacerotidae) from the Emperor Seamount Chain.

    PubMed

    Bae, Seung Eun; Kim, Hanna; Choi, Seok-Gwan; Kim, Jin-Koo

    2018-01-12

    Competitive overexploitation of the slender armorhead, Pentaceros wheeleri, a deep-sea fish inhabiting the Emperor Seamount Chain caused a serious population decline. Therefore, it is urgently necessary to clarify its genetic diversity and connectivity among populations of P. wheeleri for appropriate stock management. For this, we compared 677 base pairs (bp) of mitochondrial (mt) DNA control region (CR) sequences of 80 individuals from three seamounts (the Milwaukee, Kinmei, and Koko Seamounts) in the southern part of the Emperor Seamount Chain. Contrary to our expectation, the three seamount populations showed high genetic diversity, not yet reflecting effects from the recent population decline or due to mixed two clades. Analysis of molecular variance indicated no significant genetic differentiation between seamount populations, however, the neighbour-joining tree and minimum spanning network showed significant separation into two clades (K2P distance= 1.2-3.2%, ϕ st  = 0.5739, p < .05) regardless of seamount. The divergence time between the two clades was estimated to be 0.3-0.8 Mya, during the period of Pleistocene glacial cycles, suggesting that associated environmental changes and the unique life history traits of Pentaceros spp. might have resulted in the initiation of divergence between these clades.

  3. Past climates primary productivity changes in the Indian Ocean

    NASA Astrophysics Data System (ADS)

    Le Mézo, P. K.; Kageyama, M.; Bopp, L.; Beaufort, L.; Braconnot, P.; Bassinot, F. C.

    2016-02-01

    Organic climate recorders, e.g., coccolithophorids and foraminifera, are widely used to reconstruct past climate conditions, such as the Indian monsoon intensity and variability, since they are sensitive to climate-induced fluctuations of their environment. In the Indian Ocean, it is commonly accepted that a stronger summer monsoon will enhance productivity in the Arabian Sea and therefore the amount of organisms in a sediment core should reflect monsoon intensity. In this study, we use the coupled Earth System Model IPSLCM5A, which has a biogeochemical component PISCES that simulates primary production. We use 8 climate simulations of the IPSL-CM5A model, from -72kyr BP climate conditions to a preindustrial state. Our simulations have different orbital forcing (precession, obliquity and eccentricity), greenhouse gas concentrations as well as different ice sheet covers. The objective of this work is to characterize the mechanisms behind the changes in primary productivity between the different time periods. Our model shows that in climates where monsoon is enhanced (due to changes in precession) we do not necessarily see an increase in summer productivity in the Arabian Sea, and inversely. It seems that the glacial-interglacial state of the simulation is important in driving productivity changes in this region of the world. We try to explain the changes in productivity in the Arabian Sea with the local climate and then to link the changes in local climate to large scale atmospheric forcing and commonly used Indian monsoon definitions.

  4. Fishing for gaps in science: a bibliographic analysis of Brazilian freshwater ichthyology from 1986 to 2005.

    PubMed

    Azevedo, P G; Mesquita, F O; Young, R J

    2010-06-01

    To investigate Brazilian freshwater ichthyology, from 1986 to 2005, a bibliometric analysis was conducted using abstracts downloaded from The Web of Science database searching for the keywords 'fish', 'pisces', 'teleostei' and the address field having the word 'Brazil'. The results of this study showed that Brazilian freshwater ichthyology publications have been increasing during the study period. This process is a consequence of a series of investments that the Brazilian Government has made. Furthermore, data analyses identified scientific areas where there was a lack of scientific knowledge (e.g. studies of species threatened with extinction and certain hydrologic basins). Research institutions from the north-east and northern region of Brazil had the lowest participation in scientific productivity, which was a reflection of their regions poorer economic situation. This study showed that scientific productivity in Brazilian ichthyology was a direct reflection of state investment in research. Furthermore, data in this study follow expected statistical probabilities, for example, fishes from the most diverse families were the most studied. Thus, the study shows that great progress has been made by Brazilian ichthyologists in the last 20 years; however, due to the mega diversity of fishes in Brazil, much remains to be done if many species are to become known to science and to be saved from extinction. This it seems will depend on continued and further investment by Brazilian Government funding agencies, as Brazilian ichthyologists have demonstrated their capacity to generate high quality information about their study species.

  5. NASA Tech Briefs, June 2010

    NASA Technical Reports Server (NTRS)

    2010-01-01

    Topics covered include: Situational Awareness from a Low-Cost Camera System; Data Acquisition System for Multi-Frequency Radar Flight Operations Preparation; Mercury Toolset for Spatiotemporal Metadata; Social Tagging of Mission Data; Integrating Radar Image Data with Google Maps; Demonstration of a Submillimeter-Wave HEMT Oscillator Module at 330 GHz; Flexible Peripheral Component Interconnect Input/Output Card; Interface Supports Lightweight Subsystem Routing for Flight Applications; MMIC Amplifiers and Wafer Probes for 350 to 500 GHz; Public Risk Assessment Program; Particle Swarm Optimization Toolbox; Telescience Support Center Data System Software; Update on PISCES; Ground and Space Radar Volume Matching and Comparison Software; Web-Based Interface for Command and Control of Network Sensors; Orbit Determination Toolbox; Distributed Observer Network; Computer-Automated Evolution of Spacecraft X-Band Antennas; Practical Loop-Shaping Design of Feedback Control Systems; Fully Printed High-Frequency Phased-Array Antenna on Flexible Substrate; Formula for the Removal and Remediation of Polychlorinated Biphenyls in Painted Structures; Integrated Solar Concentrator and Shielded Radiator; Water Membrane Evaporator; Modeling of Failure for Analysis of Triaxial Braided Carbon Fiber Composites; Catalyst for Carbon Monoxide Oxidation; Titanium Hydroxide - a Volatile Species at High Temperature; Selective Functionalization of Carbon Nanotubes: Part II; Steerable Hopping Six-Legged Robot; Launchable and Retrievable Tetherobot; Hybrid Heat Exchangers; Orbital Winch for High-Strength, Space-Survivable Tethers; Parameterized Linear Longitudinal Airship Model; and Physics of Life: A Model for Non-Newtonian Properties of Living Systems.

  6. 12CO(J = 1 \\to 0) On-the-fly Mapping Survey of the Virgo Cluster Spirals. II. Molecular Gas Properties in Different Density Environments

    NASA Astrophysics Data System (ADS)

    Chung, Eun Jung; Yun, Min S.; Verheijen, Marc A. W.; Chung, Aeree

    2017-07-01

    This study investigated the properties of the molecular gas content and star formation activity of 17 Virgo spirals, 21 Ursa Major (UMa) spirals, 13 Pisces spiral galaxies, and a comparison sample of 11 field spiral galaxies with a spatially resolved gas and stellar distribution. The H I-deficient galaxies with a defH I > 0.4 have a similar range of CO luminosity normalized by the K-band luminosity (L CO/L K) like the field spirals, although their CO content can be smaller by up to a factor of 2. The CO, H I, and stellar disk diameters are closely related to each other for both cluster and field galaxies, and the relative diameters of the CO and H I disks grow monotonically and smoothly as the H I-to-stellar disk diameter ratio decreases. Cluster galaxies have a molecular gas consumption time up to 10 times shorter than that of the field comparison sample, suggesting a significant change in the molecular gas content and star formation activity among all the cluster galaxies, even when they do not show any sign of H I stripping. The strongly H I-stripped Virgo cluster galaxies show only a modestly reduced total gas consumption time, indicating that the star formation activity and gas consumption are a highly local (rather than global) phenomenon. Our finding is that the depletion of cold gas by ram-pressure stripping and/or starvation caused by preprocessing in each cluster environment makes galaxies evolve passively.

  7. Galaxy Evolution Viewed as Functions of Environment and Mass

    NASA Astrophysics Data System (ADS)

    Kodama, Tadayuki; Tanaka, Masayuki; Tanaka, Ichi; Kajisawa, Masaru

    We present two large surveys of distant clusters currently being carried out with Subaru, making use of its great capability of wide-field study both in the optical and in the near-infrared. The optical surveys, called PISCES, have mapped out large scale structures in and around 8 distant clusters at 0.4 < z <1.3, composed of multiple filaments and clumps extended over 15-30 Mpc scale. From the photometric and spectroscopic properties of galaxies over a wide range in environment, we find that the truncation of galaxies is seen in the outskirts of clusters rather than in the cluster cores.We also see a clear environmental dependence of the down-sizing (progressively later quenching of star formation in smaller galaxies). The near-infrared surveys are being conducted with a new wide-field instrument targeting proto-clusters around high-zradio-loud galaxies up to z ~4. Most of these field are known to show a large number of Lyαand/or Hαemitters at the same redshifts of the radio galaxies. We see a clear excess of near-infrared selected galaxies (JHK s -selected galaxies as well as DRG) in these fields, and they are indeed proto-clusters with not only young emitters but also evolved populations. Spatial distribution of such NIR selected galaxies is filamentary and track similar structures traced by the emitters. There is an hint that the bright-end of the red sequence first appeared between z= 3 and 2.

  8. Optic chiasm in the species of order Clupeiformes, family Clupeidae: optic chiasm of Spratelloides gracilis shows an opposite laterality to that of Etrumeus teres.

    PubMed

    Mogi, Kazue; Misawa, Kazuya; Utsunomiya, Kentaro; Kawada, Yuta; Yamazaki, Toshihisa; Takeuchi, Shigeo; Toyoizumi, Ryuji

    2009-09-01

    In most teleost fishes, the optic nerves decussate completely as they project to the mesencephalic region. Examination of the decussation pattern of 25 species from 11 different orders in Pisces revealed that each species shows a specific chiasmic type. In 11 species out of the 25, laterality of the chiasmic pattern was not determined; in half of the individuals examined, the left optic nerve ran dorsally to the right optic nerve, while in the other half, the right optic nerve was dorsal. In eight other species the optic nerves from both eyes branched into several bundles at the chiasmic point, and intercalated to form a complicated decussation pattern. In the present study we report our findings that Spratelloides gracilis, of the order Clupeiformes, family Clupeidae, shows a particular laterality of decussation: the left optic nerve ran dorsally to the right (n=200/202). In contrast, Etrumeus teres, of the same order and family, had a strong preference of the opposite (complementary) chiasmic pattern to that of S. gracilis (n=59/59), revealing that these two species display opposite left-right optic chiasm patterning. As far as we investigated, other species of Clupeiformes have not shown left-right preference in the decussation pattern. We conclude that the opposite laterality of the optic chiasms of these two closely related species, S. gracilis and E. teres, enables investigation of species-specific laterality in fishes of symmetric shapes.

  9. Optic chiasm in the species of order Clupeiformes, family Clupeidae: Optic chiasm of Spratelloides gracilis shows an opposite laterality to that of Etrumeus teres

    PubMed Central

    Mogi, Kazue; Misawa, Kazuya; Utsunomiya, Kentaro; Kawada, Yuta; Yamazaki, Toshihisa; Takeuchi, Shigeo; Toyoizumi, Ryuji

    2009-01-01

    In most teleost fishes, the optic nerves decussate completely as they project to the mesencephalic region. Examination of the decussation pattern of 25 species from 11 different orders in Pisces revealed that each species shows a specific chiasmic type. In 11 species out of the 25, laterality of the chiasmic pattern was not determined; in half of the individuals examined, the left optic nerve ran dorsally to the right optic nerve, while in the other half, the right optic nerve was dorsal. In eight other species the optic nerves from both eyes branched into several bundles at the chiasmic point, and intercalated to form a complicated decussation pattern. In the present study we report our findings that Spratelloides gracilis, of the order Clupeiformes, family Clupeidae, shows a particular laterality of decussation: the left optic nerve ran dorsally to the right (n = 200/202). In contrast, Etrumeus teres, of the same order and family, had a strong preference of the opposite (complementary) chiasmic pattern to that of S. gracilis (n = 59/59), revealing that these two species display opposite left–right optic chiasm patterning. As far as we investigated, other species of Clupeiformes have not shown left–right preference in the decussation pattern. We conclude that the opposite laterality of the optic chiasms of these two closely related species, S. gracilis and E. teres, enables investigation of species-specific laterality in fishes of symmetric shapes. PMID:19229672

  10. Impact of Trichodesmium Sp. on Pacific Primary production

    NASA Astrophysics Data System (ADS)

    Dutheil, C.; Menkes, C.; Aumont, O.; Shiozaki, T.; Bonnet, S.; Rodier, M.; Bopp, L.; Lorrain, A.

    2016-12-01

    Recent sea-experiments have suggested that the South Pacific is one of the world's hot spot for nitrogen fixation. In that region, diazotrophs Trichodesmium Sp. have been shown to be one of its major contributors. Here we assess the climatological impact of these diazotrophs in the Pacific by using a 1°x1° coupled model dynamical-biogeochemical model ROMS-PISCES in which an explicit a Trichodesmium compartment is implemented. Firstly, we validate our model on the main limiting components (phosphate, iron, and temperature) of Trichodesmium growth. Phosphate patterns show modelled values and structures in qualitatively good agreement with observations. Iron concentrations are in good agreement with the observations. We also validate our model on nitrogen fixation rates. The regional spatial patterns of strong fixation are coherent with the observations. In the South Pacific, the model is able to reproduce the strong east-west gradient. Secondly, we evaluate the climatological effects of Trichodesmium on the biogeochemical conditions of the Tropical Pacific by adding with the explicit Trichodesmium compartment. The implementation of this compartment improves the model ability to reproduce the observed chlorophyll fields in the South West Pacific and the northern hemisphere, especially around Hawaii. In regions where there are strong nitrogen fixation rates, we observe an increase in the primary production by more than 100%, and an increase by more than 60 % in the production due to nanophytoplankton and diatoms, between the simulation with trichodesmium and without nitrogen fixation.

  11. The Flow-field From Galaxy Groups In 2MASS

    NASA Astrophysics Data System (ADS)

    Crook, Aidan; Huchra, J.; Macri, L.; Masters, K.; Jarrett, T.

    2011-01-01

    We present the first model of a flow-field in the nearby Universe (cz < 12,000 km/s) constructed from groups of galaxies identified in an all-sky flux-limited survey. The Two Micron All-Sky Redshift Survey (2MRS), upon which the model is based, represents the most complete survey of its class and, with near-IR fluxes, provides the optimal method for tracing baryonic matter in the nearby Universe. Peculiar velocities are reconstructed self-consistently with a density-field based upon groups identified in the 2MRS Ks<11.75 catalog. The model predicts infall toward Virgo, Perseus-Pisces, Hydra-Centaurus, Norma, Coma, Shapley and Hercules, and most notably predicts backside-infall into the Norma Cluster. We discuss the application of the model as a predictor of galaxy distances using only angular position and redshift measurements. By calibrating the model using measured distances to galaxies inside 3000 km/s, we show that, for a randomly-sampled 2MRS galaxy, improvement in the estimated distance over the application of Hubble's law is expected to be 30%, and considerably better in the proximity of clusters. We test the model using distance estimates from the SFI++ sample, and find evidence for improvement over the application of Hubble's law to galaxies inside 4000 km/s, although the performance varies depending on the location of the target. This work has been supported by NSF grant AST 0406906 and the Massachusetts Institute of Technology Bruno Rossi and Whiteman Fellowships.

  12. Helminth parasites of the oceanic horse mackerel Trachurus picturatus Bowdich 1825 (Pisces: Carangidae) from Madeira Island, Atlantic Ocean, Portugal.

    PubMed

    Costa, G; Melo-Moreira, E; Pinheiro de Carvalho, M A A

    2012-09-01

    The helminth parasite fauna of the oceanic horse mackerel Trachurus picturatus Bowdich 1825, caught off the Madeira Islands was composed of six different taxa. Prevalence and abundance of larval Anisakis sp. (Nematoda: Anisakidae) and Nybelinia lingualis (Trypanorhyncha: Tentaculariidae), the most common parasite taxa, were 24.3%, 0.9 and 37.9%, 0.7, respectively. Bolbosoma vasculosum (Acanthocephala: Polymorphidae) and the monogeneans Heteraxinoides atlanticus (Monogenea: Heteraxinidae) and Pseudaxine trachuri (Monogenea: Gastrocotylidae) were comparatively rare. The depauperate helminth fauna of the oceanic horse mackerel at Madeira compared to other geographical regions of the north-eastern Atlantic, namely the Azores banks and the West African coast, may be attributed to the paucity of nutrients off oceanic islands and to a low density of the fish population.

  13. Morphological biomarkers in Prochilodus lineatus (pisces, prochilodontidae) for environmental impact assessment in the region of the Baixada Maranhense, Brazil

    NASA Astrophysics Data System (ADS)

    Dantas, Janaína Gomes; Andrade, Ticianne de Sousa de Oliveira Mota; Sodré, Camilla Fernanda Lima; Castro, Jonatas da Silva; Carvalho-Neta, Raimunda Nonata Fortes; Junior, Audálio Rebelo Torres

    2015-12-01

    This study aimed to identify the types of histopathological lesions found in gills of Prochilodus lineatus of the Environmental Protection Area of the Baixada Maranhense region (Brazil). Fish were collected in Mearim river. Sampling took place in October, November and December 2014. We have purchased 30 samples of fish from local fishermen. In the laboratory fish gills were removed, and then fixed in 10% formalin solution and kept into alcohol 70% to the usual histological processing. The tissue was performed by light microscopy and findings were photomicrographed in light microscope - ZEIS. The following lesions were identified: epithelial displacement, the marginal channel shift a start vascular congestion, hyperplasia and merging multiple slides; epithelial disruption, edema, vascular congestion, total fusion of lamellae and disorganization of secondary lamellae. These changes express a response of the body to some xenobiontes. Morphological changes in the gills may represent adaptive strategies for conservation of some biological functions when animals are facing changes in the water quality.

  14. Estimation of spawning area of Pisodonophis sangjuensis Ji and Kim, 2011 (Pisces: Ophichthidae) based on leptocephali size and distribution

    NASA Astrophysics Data System (ADS)

    Ji, Hwan-Sung; Hwang, Kangseok; Choi, Jung Hwa; Cha, Hyung-Kee; Kim, Jin-Koo

    2017-06-01

    Pre-metamorphic leptocephali of Pisodonophis sangjuensis ( n = 91, 10.4-90.2 mm in total length, TL) were collected in the East China Sea for the first time. Pre-metamorphic leptocephali of P. sangjuensis, which were identified using mitochondrial DNA cytochrome c oxidase subunit I gene (mtDNA COI), are characterized by various combinations of morphological characters: 8 moderate to pronounced gut loops with the kidney terminating on the 6-7th loops; and 8 subcutaneous pigment patches on the tail just ventral to the notochord. Pisodonophis sangjuensis leptocephali were more numerously collected offshore than inshore around Jeju Island. The smallest leptocephali (< 15.0 mm TL) were collected from the south far from Jeju Island, and the largest leptocephali (> 100.0 mm TL) were collected from around Jeju Island and the southern coast of Korea. Our findings indicate that P. sangjuensis spawns offshore south of Jeju Island that is an area associated with high water temperature, and then the hatched leptocephali are transported to Jeju Island or the southern coast of Korea by the Tsushima Warm Current.

  15. Pathology of Piscinoodinium sp. (Protozoa: Dinoflagellida), parasites of the ornamental freshwater catfishes Corydoras spp. and Brochis splendens (Pisces: Callichthyidae).

    PubMed

    Ferraz, E; Sommerville, C

    1998-05-14

    Piscinoodinium sp. (Protozoa, Dinoflagellida) was commonly found on routine smears of samples of Brochis splendens and Corydoras spp. imported into Britain from South America, and on samples of the same group of fish examined at the exporters' holding facilities in Brazil. Infected fish had trophonts of different sizes on the gills and skin. In histological sections of the skin, the trophonts were found to be attached within depressions of different depths or enclosed by hyperplastic epithelial cells. Such enclosed trophonts have not previously been reported. Since some of the enclosed trophonts were dead, it was thought that enclosure was a result of the deep penetration of the trophont and the host defence mechanism. On the gills the Piscinoodinium infection was commonly associated with epithelial hypertrophy, focal and diffuse hyperplasia, oedema of the respiratory epithelium and lamellar fusion. The presence of this protozoan on different species of fish from the same shipment suggests that the infection was acquired before export. The source of infection and the stages of the export process which expose the fish to the highest risk of infection are discussed.

  16. Morphological biomarkers in Prochilodus lineatus (pisces, prochilodontidae) for environmental impact assessment in the region of the Baixada Maranhense, Brazil

    DOE Office of Scientific and Technical Information (OSTI.GOV)

    Dantas, Janaína Gomes; Superintendency of Biodiversity and Protected Areas of the Secretariat of Environment and Natural Resources of Maranhão; Andrade, Ticianne de Sousa de Oliveira Mota

    2015-12-31

    This study aimed to identify the types of histopathological lesions found in gills of Prochilodus lineatus of the Environmental Protection Area of the Baixada Maranhense region (Brazil). Fish were collected in Mearim river. Sampling took place in October, November and December 2014. We have purchased 30 samples of fish from local fishermen. In the laboratory fish gills were removed, and then fixed in 10% formalin solution and kept into alcohol 70% to the usual histological processing. The tissue was performed by light microscopy and findings were photomicrographed in light microscope - ZEIS. The following lesions were identified: epithelial displacement, themore » marginal channel shift a start vascular congestion, hyperplasia and merging multiple slides; epithelial disruption, edema, vascular congestion, total fusion of lamellae and disorganization of secondary lamellae. These changes express a response of the body to some xenobiontes. Morphological changes in the gills may represent adaptive strategies for conservation of some biological functions when animals are facing changes in the water quality.« less

  17. Onychostoma brevibarba, a new cyprinine fish (Pisces: Teleostei) from the middle Chang Jiang basin in Hunan Province, South China.

    PubMed

    Song, Xue-Ling; Cao, Liang; Zhang, E

    2018-04-16

    Onychostoma brevibarba, a new cyprinid species, is described from two tributaries flowing into the Xiang Jiang (= River) of the middle Chang Jiang basin in Hunan Province, South China. The new species is morphologically similar to two Chinese congeners, O. minnanense and O. barbatulum, but differs from them in the anteromedian extension of the postlabial groove. It further differs from O. minnanense in the maxillary-barbel length, shape and body coloration, and from O. barbatulum in the number of lateral-line perforated scales and the width of the mouth opening. The validity of the new species and its close relationship with these two species were affirmed by a molecular phylogenetic analysis based on the mitochondrial cyt b and CO1 genes.

  18. A new species of Pseudocrepidobothrium (Cestoda: Proteocephalidea) from Pseudoplatystoma reticulatum (Pisces: Siluriformes) in the Paraná River basin (Argentina).

    PubMed

    Arredondo, Nathalia J; De Pertierra, Alicia A Gil; De Chambrier, Alain

    2014-10-01

    This study describes the proteocephalidean tapeworm Pseudocrepidobothrium chanaorum sp. n. (Proteocephalidae: Proteocephalinae), which was found in the intestine of Pseudoplatystoma reticulatum (Eigenmann et Eigenmann) from the Colastiné River, a tributary of the Paraná River. The new species differs from the two other species of the genus, P. eirasi (Rego et de Chambrier, 1995) and P. ludovici Ruedi et de Chambrier, 2012, parasites of Phractocephalus hemioliopterus (Bloch et Schneider) from the Amazon River in Brazil, in having fewer proglottides (4-8 without ventral appendages vs 7-12 with ventral appendages and 20-36 without ventral appendages, respectively), a smaller scolex (350-450 μm wide vs 495-990 μm and 515-1020 μm wide, respectively), in the total number of testes (21-25 vs 21-51 and 37-79, respectively), a cirrus-sac usually directed anteriorly if the vagina is posterior to the cirrus-sac vs transversely situated in the known species. The study of the tegumental surface of Pseudocrepidobothrium spp. revealed the presence of four types of microtriches: papilliform, acicular and capilliform filitriches, and gladiate spinitriches. The three species have a similar microthrix pattern, with minor differences on the immature proglottis surface. Pseudocrepidobothrium chanaorum sp. n. is the ninth proteocephalid reported from P. reticulatum.

  19. Helminths and lipid peroxidation in Astyanax aeneus (Pisces: Characidae) from a river in the humid subtropics of southeastern Mexico.

    PubMed

    Espinal-Carrión, Tania; López-López, Eugenia

    2010-02-17

    Xenobiotic mixtures in aquatic ecosystems may compromise fish health by inducing oxidative stress, decreasing resistance, and fostering susceptibility to pathogens such as helminths. Lipid peroxidation (LPO) is one of the most commonly used methods to evaluate oxidative stress. The present study examines the potential correlations between LPO in liver, muscle, and gill and the presence of helminths in Astyanax aeneus from a subtropical river in Mexico. Five helminth species were identified: the trematodes Uvulifer ambloplitis, a subdermal larval parasite, and Clinostomum complanatum, which infected the base of the gills; the nematodes Contracaecum sp. and Spiroxys sp.; and the acanthocephalan Polymorphus sp. The latter 3 species occurred in the posterior half of the intestine. Total helminth abundance was highest in April and July. Helminth species richness increased along a gradient from the headwaters to the middle reaches of the river. An integrated biomarker response for LPO (IBR-LPO) was assessed in the 3 tissues analyzed. IBR-LPO peaked in July. A direct correlation was found between gill and muscle LPO and mean abundance of Clinostomum complanatum, Contracaecum sp., and orthophosphate values, as well as between liver LPO and mean abundance of Polymorphus sp., whereas no relationship was found between LPO and U. ambloplitis or Spiroxys sp. This research revealed an association of both orthophosphate values and the presence or abundance of parasites with oxidative stress levels in A. aeneus, without any causal association, but rather as a result of synergistic processes associated with these variables.

  20. Comparative age and growth of common snook Centropomus undecimalis (Pisces: Centropomidae) from coastal and riverine areas in Southern Mexico.

    PubMed

    Perera-Garcia, Martha A; Mendoza-Carranza, Manuel; Contreras-Sánchez, Wilfrido; Ferrara, Allyse; Huerta-Ortiz, Maricela; Hernández-Gómez, Raúl E

    2013-06-01

    Common snook Centropomus unidecimalis is an important commercial and fishery species in Southern Mexico, however the high exploitation rates have resulted in a strong reduction of its abundances. Since, the information about its population structure is scarce, the objective of the present research was to determine and compare the age structure in four important fishery sites. For this, age and growth of common snook were determined from specimens collected monthly, from July 2006 to March 2008, from two coastal (Barra Bosque and Barra San Pedro) and two riverine (San Pedro and Tres Brazos) commercial fishery sites in Tabasco, Mexico. Age was determined using sectioned saggitae otoliths and data analyzed by von Bertalanffy and Levenberg-Marquardt among others. Estimated ages ranged from 2 to 17 years. Monthly patterns of marginal increment formation and the percentage of otoliths with opaque rings on the outer edge demonstrated that a single annulus was formed each year. The von Bertalanffy parameters were calculated for males and females using linear adjustment and the non-linear method of Levenberg-Marquardt. The von Bertalanffy growth equations were FLt = 109.21(1-e-0.2(t+0.57)) for Barra Bosque, FLt = 94.56(1-e-027(t+0.485)) for Barra San Pedro, FLt = 97.15(1-e 0.17(t + 1.32)) for San Pedro and FLt = 83.77(1-e-026(t + 0.49)) for Tres Brazos. According to (Hotelling's T2, p < 0.05) test growth was significantly greater for females than for males. Based on the Chen test, von Bertalanffy growth curves were different among the study sites (RSS, p < 0.05). Based on the observed differences in growth parameters among sampling sites (coastal and riverine environments) future research need to be conducted on migration and population genetics, in order to delineate the stock structure of this population and support management programs.

  1. Tempest in Vailulu'u Crater

    NASA Astrophysics Data System (ADS)

    Hart, S. R.; Staudigel, H.; Koppers, A.; Young, C.; Baker, E.

    2005-12-01

    The summit crater of the Samoan submarine volcano, Vailulu'u, has been actively erupting since 2001. Based on water chemistry, CTD and temperature logger data from 2000 and 2001, we formulated a model for the hydrothermal system in the crater involving a tidally-modulated "breathing" (Staudigel et al., 2004). During low stands of internal waves (exterior to the crater), the crater exhales warm buoyant hydrothermal water that forms a "halo" around the crater rich in Mn, 3He, and particulates. During "high tides", cold dense external water is inhaled into the crater through the three breaches, and cascades to the crater floor. In April 2005, we used the HURL PISCES V submersible to deploy various temperature and particulate loggers and current meters in and around the crater; these were retrieved by Pisces V in July 2005. In addition, continuous CTD profiling was carried out over 12 hour tidal cycles at one location inside, and one outside, the crater. The accumulated data set fully reinforces our "breathing" model. An ADCP, deployed for 93 days in the NW breach at 752m, showed dominant easterly inflow currents and westerly outflow currents, with maximum velocities of approximately 25 cm/s. The flows were coherent for distances up to 50-60m above the ADCP; the mean inflow velocity and azimuth (20-40 m interval above the ADCP) was 7 cm/s due east; the mean outflow velocity and azimuth was 5 cm/s at 260 degrees. Mean inflows were consistently colder than outflows (5.00 C vs 5.20 C); the maximum observed range in temperature was 1.1 C, correlated with peak flow velocities. The coldest inflows would require very large regional internal wave amplitudes, up to 50-100 meters. A 2-D acoustic current meter was deployed on top of the west crater rim summit (582m) for 90 days, and in the S breach (697m) for 4 days. The summit flows are presumed to represent the regional scale currents; these were largely from the SW quadrant, with typical velocities of 8-15 cm/s, and peaks to

  2. Efficacy of a glycoprotein DNA vaccine against viral haemorrhagic septicaemia (VHS) in Pacific herring, Clupea pallasii Valenciennes

    USGS Publications Warehouse

    Hart, L.M.; Lorenzen, Niels; LaPatra, S.E.; Grady, C.A.; Roon, S.E.; O’Reilly, J.; Gregg, J.L.; Hershberger, P.K.

    2012-01-01

    Viral haemorrhagic septicaemia virus (VHSV) and its associated disease state, viral haemorrhagic septicaemia (VHS), is hypothesized to be a proximate factor accounting for the decline and failed recovery of Pacific herring populations in Prince William Sound, AK (Marty et al. 1998, 2003, 2010). Survivors of laboratory-induced VHSV epizootics develop resistance to subsequent viral exposure (Kocan et al. 2001; Hershberger et al. 2007, 2010), which is likely the result of immune system recognition of the viral glycoprotein (G) (Lecocq-Xhonneux et al. 1994), a surface antigen that contains neutralizing epitopes (Lorenzen, Olesen & Jorgensen 1990; Jørgensen et al. 1995) and cell attachment domains (Lecocq-Xhonneux et al. 1994; Estepa & Coll 1996). These properties have proven useful in the development of G-gene-based DNA vaccines for VHSV and a related rhabdovirus, infectious haematopoietic necrosis virus (IHNV) (Anderson et al. 1996; Heppell et al. 1998; Corbeil et al. 1999; Einer-Jensen et al. 2009). Rainbow trout fingerlings, Oncorhynchus mykiss (Walbaum), vaccinated with 1 µg of either the VHS or IHN vaccine are protected from VHS when exposed to virus as early as 4 days (44 degree days) post-vaccination (p.v.) (Lorenzen et al. 2002). At later time points (80 days p.v.; 880 degree days), the level of cross-protection against VHS by IHN vaccination is either completely lost (60 days p.v.; 660 degree days) (3 g rainbow trout; 1 µg vaccine dose) (Lorenzen et al. 2002) or present at intermediate levels (6.5 g rainbow trout; 1 µg vaccine dose) (Einer-Jensen et al. 2009). Comparatively, VHS vaccination remains effective as long as 9 months (2520 degree days) p.v. (100 g rainbow trout; 0.5 µg vaccine dose) (McLauchlan et al. 2003). These results suggest that IHN and VHS vaccination activate a rapid transitory innate immune response against VHSV that is followed by long-term adaptive immunity in VHS-vaccinated trout (Lorenzen et al. 2002).

  3. Modeling response of species to microcontaminants: comparative ecotoxicology by (sub)lethal body burdens as a function of species size and partition ratio of chemicals.

    PubMed

    Hendriks, A J

    1995-11-01

    A model was designed and calibrated with accumulation data to calculate the internal concentrations of microcontaminants in organisms as a function of a few constants and variables. The main factors are the exposure time, the external exposure concentration, the partition ratio of the compound, and the size of the taxon concerned. The model was applied to calculate the lethal and sublethal body burdens of several priority compounds and some major taxa. Estimations were generally confirmed at the order of magnitude level by measured residues and applied doses if available. According to the estimations, most priority compounds chosen were critical for most taxa above internal concentrations of 0.1 mmol.kg-1 wet wt. Trichloromethane, 1,2,4-trichlorobenzene, and hexachlorobenzene were lethal above this level only, whereas other organic microcontaminants affected at least some taxa at lower body burdens. The log(Kow) of the organic compounds ranged from 2.0 to 7.0. Keeping in mind that bioconcentration and -magnification ratios for metals may be quite variable, the lowest critical residues estimated were just below the value of 0.1 mmol.kg-1 wet wt. Here, external concentrations encountered in natural habitats seem to be a promising tool for predictive comparative ecotoxicology. The critical body burdens for plants and invertebrates may have been overestimated due to uncertainty about the parameters. Among the different taxa, however, the fish families chosen (Salmonidae and Cyprinidae) seem to be most sensitive to most compounds. Internal response concentrations of the herbicide atrazine were the lowest in micro- and macrophytes, whereas parathion affected invertebrates at low levels. The database that provided the external response concentrations was also consulted to estimate so-called extrapolation or safety factors. On average, long-term no effect concentrations in water are estimated to be about 10-30 times below short-term median lethal levels. In general, short

  4. Wildfire Impacts on Water Quality, Macroinvertebrates and Trout: An Initial Survey After the West Fork Complex Fire in the Upper Rio Grande

    NASA Astrophysics Data System (ADS)

    Rust, A.; Knipper, K. R.; Randall, J.; Hogue, T. S.

    2014-12-01

    Forest fires affect water quality in the disrupted watershed, which can devastate the aquatic ecosystem including sensitive trout (Salmonidae) and macroinvertebrate species. The West Fork Fire Complex consumed 88,724 acres of forest in the state of Colorado during the summer of 2013. The majority (88%) of the burn area was comprised of Engelmann spruce (Picea engelmanii) trees killed previously by Spruce Beetle (Ips spp.). Damage to the soils was of moderate to high severity in the majority of the area (60%). The recent fire surrounded the Rio Grande, affecting water quality and habitat critical to insects and fish. The water quality of the Rio Grande (above and below the burn) and some of the effected tributaries is currently being monitored for both quality and quantity. Parameters important to the survival of aquatic life, such as flow, temperature, dissolved oxygen, pH, conductivity, total dissolved solids, total suspended solids, turbidity, nutrients, and suspended and dissolved metals are being monitored along the Rio Grande and in tributaries. Macroinvertebrate and fish populations are sampled in the same locations. First year observations showed the ecosystem to be relatively resilient, with stable water quality and survival of insects and fish. However, an intense monsoon season this summer is driving extensive sediments into tributaries from steep, severely burned hillslopes. These monsoon events have caused acute and dramatic fish kills, where hundreds of trout were reported killed in one tributary in a single day event. Turbidity was observed as high as 488 NTU in the impacted stream with fish kill, whereas the turbidity was 25 NTU in a neighboring tributary outside of the burn area. Salmonids can be negatively impacted by relatively low turbidity, with prior studies noting that the turbidity threshold for rainbow trout is 70 NTU. Continued monitoring of water quality, macroinvertebrate populations, and fish populations is being undertaken to determine

  5. Sources of Minor and Rare-Earth Elements in Hydrothermal Edifices of Near-Continental Rifts with Sedimentary Cover: Evidence from the Guaymas Basin, Southern Trough

    NASA Astrophysics Data System (ADS)

    Lein, A. Yu.; Dara, O. M.; Bogdanova, O. Yu.; Novikov, G. V.; Ulyanova, N. V.; Lisitsyn, A. P.

    2018-03-01

    The mineralogy and geochemistry of a fragment of an active hydrothermal edifice from the Hydrothermal Hill of the Southern Trough valley of the Guaymas Basin in the Gulf of California were studied. The sample was collected from a depth of 1995 m by the Pisces manned submersible on cruise 12 of the R/V Akademik Mstislav Keldysh, Institute of Oceanology, Russian Academy of Sciences. The fragment and the edifice itself consists of two accrete pipes: ore (pyrrhotite) and barren (carbonate) combined in a single edifice by an outer barite-opal zone. The ore edifice is located in the rift zone of the Guaymas Basin with a thick sedimentary cover and is depleted in metals in comparison with ores from rift zones of the open ocean, which are not blocked by sedimentary deposits. This is explained by loss of metals at the boundary between hot sills and sedimentary rocks and by the processes of interaction of hydrothermal solutions with sedimentary deposits. The sedimentary series faciitates long-term preservation of endogenous heat and the ore formation process. Ore edifices of the Guaymas Basin are mostly composed of pyrrhotite, have a specific set of major elements, microelements and REEs, and contain naphthenic hydrocarbons. They may be search signs of hidden polymetallic deposits, considered to be the roots of ore occurrences localized under the surface of the bottom in young active rifts with high spreading and sedimentation rates, i.e., in near-continental areas of rifts of the humid zone with avalanche sedimentation.

  6. Hydrogen isotope transport across tungsten surfaces exposed to a fusion relevant He ion fluence

    NASA Astrophysics Data System (ADS)

    Baldwin, M. J.; Doerner, R. P.

    2017-07-01

    Tungsten targets are exposed to controlled sequences of D2 and He, and He and D2 plasma in the Pisces-A linear plasma device, with a view to studying the outward and inward transport of D across a He implanted surface, using thermal desorption mass spectrometry. Differences in transport are interpreted from changes in peak desorption temperature and amplitude for D2 release, compared against that of control targets exposed to just D2 plasma. Desorption data are modeled with Tmap-7 to infer the nature by which He leads to the ‘reduced inventory’ effect for H isotope uptake. A dual segment (surface-30 nm, bulk) W Tmap-7 model is developed, that simulates both plasma exposure and thermal desorption. Good agreement between desorption data and model is found for D2 release from control targets provided that the implanted flux is reduced, similar to that reported by others. For He affected release, the H isotope transport properties of the surface segment are adjusted away from control target bulk values during the computation. Modeling that examines outward D transport through the He implanted layer suggests that a permeation barrier is active, but bubble induced porosity is insufficient to fully explain the barrier strength. Moderately increased diffusional migration energy in the model over the He affected region, however, gives a barrier strength consistent with experiment. The same model, applied to inward transport, predicts the reduced inventory effect, but a further reduction in the implanted D flux is necessary for precise agreement.

  7. Carbon balance of China constrained by CONTRAIL aircraft CO2 measurements

    NASA Astrophysics Data System (ADS)

    Jiang, F.; Wang, H. M.; Chen, J. M.; Machida, T.; Zhou, L. X.; Ju, W. M.; Matsueda, H.; Sawa, Y.

    2014-03-01

    Terrestrial CO2 flux estimates in China using atmospheric inversion method are beset with considerable uncertainties because very few atmospheric CO2 concentration measurements are available. In order to improve these estimates, nested atmospheric CO2 inversion during 2002-2008 is performed in this study using passenger aircraft-based CO2 measurements over Eurasia from the Comprehensive Observation Network for Trace gases by Airliner (CONTRAIL) project. The inversion system includes 43 regions with a focus on China, and is based on the Bayesian synthesis approach and the TM5 transport model. The terrestrial ecosystem carbon flux modeled by the BEPS model and the ocean exchange simulated by the OPA-PISCES-T model are considered as the prior fluxes. The impacts of CONTRAIL CO2 data on inverted China terrestrial carbon fluxes are quantified, the improvement of the inverted fluxes after adding CONTRAIL CO2 data are rationed against climate factors and evaluated by comparing the simulated atmospheric CO2 concentrations with three independent surface CO2 measurements in China. Results show that with the addition of CONTRAIL CO2 data, the inverted carbon sink in China increases while those in South and Southeast Asia decrease. Meanwhile, the posterior uncertainties over these regions are all reduced. CONTRAIL CO2 data also have a large effect on the inter-annual variation of carbon sinks in China, leading to a better correlation between the carbon sink and the annual mean climate factors. Evaluations against the CO2 measurements at three sites in China also show that the CONTRAIL CO2 measurements have improved the inversion results.

  8. Relativistic R -matrix calculations for the electron-impact excitation of neutral molybdenum

    NASA Astrophysics Data System (ADS)

    Smyth, R. T.; Johnson, C. A.; Ennis, D. A.; Loch, S. D.; Ramsbottom, C. A.; Ballance, C. P.

    2017-10-01

    A recent PISCES-B Mod experiment [Nishijima et al., J. Phys. B 43, 225701 (2010), 10.1088/0953-4075/43/22/225701] has revealed up to a factor of 5 discrepancy between measurement and the two existing theoretical models [Badnell et al., J. Phys. B 29, 3683 (1996), 10.1088/0953-4075/29/16/014; Bartschat et al., J. Phys. B 35, 2899 (2002), 10.1088/0953-4075/35/13/305], providing important diagnostics for Mo i. In the following paper we address this issue by employing a relativistic atomic structure and R -matrix scattering calculations to improve upon the available models for future applications and benchmark results against a recent Compact Toroidal Hybrid experiment [Hartwell et al., Fusion Sci. Technol. 72, 76 (2017), 10.1080/15361055.2017.1291046]. We determine the atomic structure of Mo i using grasp0, which implements the multiconfigurational Dirac-Fock method. Fine structure energies and radiative transition rates are presented and compared to existing experimental and theoretical values. The electron-impact excitation of Mo i is investigated using the relativistic R -matrix method and the parallel versions of the Dirac atomic R -matrix codes. Electron-impact excitation cross sections are presented and compared to the few available theoretical cross sections. Throughout, our emphasis is on improving the results for the z 1,2,3o5P →a S52,z 2,3,4o7P → a S73 and y 2,3,4o7P → a S73 electric dipole transitions of particular relevance for diagnostic work.

  9. A revision of the haploporinae nicoll, 1914 (digenea: haploporidae) from mullets (mugilidae): Saccocoelium Looss, 1902.

    PubMed

    Blasco-Costa, Isabel; Montero, Francisco E; Gibson, David I; Balbuena, Juan Antonio; Raga, Juan Antonio; Kostadinova, Aneta

    2009-03-01

    Saccocoelium Looss, 1902 is revised and a key to its recognised species is presented. S. obesum Looss, 1902 (type-species) and S. tensum Looss, 1902 are redescribed based on material from Liza spp. (Pisces: Mugilidae) in Spanish Mediterranean and, in the case of the former, Bulgarian Black Sea waters. Two new species, S. cephali n. sp. and S. currani n. sp., are described from Mugil cephalus L. in Spanish Mediterranean waters. S. gohari Ramadan, Saoud, Ashour & Mansour, 1989b is recognised and commented upon. Lecithobotrys helmymohamedi Ramadan, Saoud, Ashour & Mansour, 1989a, S. portsaidensis El-Shahawi, El-Gindy, Imam & Al-Bassel, 1992, S. saoudi El-Shahawi, El-Gindy, Imam & Al-Bassel, 1992, Neosaccocoelium aegyptiacus El-Shahawi, El-Gindy, Imam & Al-Bassel, 1992 are considered to be synonyms of S. tensum and Neosaccocoelium El-Shahawi, El-Gindy, Imam & Al-Bassel, 1992 a synonym of Saccocoelium. S. obesum, S. tensum and the two new species are compared morphometrically and distinguished by univariate and multivariate analyses. Lecithobotrys mugilis Rekharani & Madhavi, 1985 is transferred to Unisaccus Martin, 1973 as U. mugilis (Rekharani & Madhavi, 1985) n. comb., and Lecithobotrys sprenti Martin, 1973 [= Saccocoelium sprenti (Martin, 1973) Overstreet & Curran, 2005] is transferred to Unisaccus as U. sprenti (Martin, 1973) n. comb. S. megasacculum Liu, Wang, Peng, Yu & Yang, 2004 is transferred to Elliptobursa Wu, Lu & Zhu, 1996 as E. megasacculum (Liu, Wang, Peng, Yu & Yang, 2004) n. comb. S. tripathi Dutta, 1995 (syn. Saccocoelium tripathi Datta & Manna, 1998) is considered to be a species inquirenda.

  10. Galaxy clusters in simulations of the local Universe: a matter of constraints

    NASA Astrophysics Data System (ADS)

    Sorce, Jenny G.; Tempel, Elmo

    2018-06-01

    To study the full formation and evolution history of galaxy clusters and their population, high-resolution simulations of the latter are flourishing. However, comparing observed clusters to the simulated ones on a one-to-one basis to refine the models and theories down to the details is non-trivial. The large variety of clusters limits the comparisons between observed and numerical clusters. Simulations resembling the local Universe down to the cluster scales permit pushing the limit. Simulated and observed clusters can be matched on a one-to-one basis for direct comparisons provided that clusters are well reproduced besides being in the proper large-scale environment. Comparing random and local Universe-like simulations obtained with differently grouped observational catalogues of peculiar velocities, this paper shows that the grouping scheme used to remove non-linear motions in the catalogues that constrain the simulations affects the quality of the numerical clusters. With a less aggressive grouping scheme - galaxies still falling on to clusters are preserved - combined with a bias minimization scheme, the mass of the dark matter haloes, simulacra for five local clusters - Virgo, Centaurus, Coma, Hydra, and Perseus - is increased by 39 per cent closing the gap with observational mass estimates. Simulacra are found on average in 89 per cent of the simulations, an increase of 5 per cent with respect to the previous grouping scheme. The only exception is Perseus. Since the Perseus-Pisces region is not well covered by the used peculiar velocity catalogue, the latest release lets us foresee a better simulacrum for Perseus in a near future.

  11. Hubble Spies a Loopy Galaxy

    NASA Image and Video Library

    2015-02-02

    This NASA Hubble Space Telescope photo of NGC 7714 presents an especially striking view of the galaxy's smoke-ring-like structure. The golden loop is made of sun-like stars that have been pulled deep into space, far from the galaxy's center. The galaxy is located approximately 100 million light-years from Earth in the direction of the constellation Pisces. The universe is full of such galaxies that are gravitationally stretched and pulled and otherwise distorted in gravitational tug-o'-wars with bypassing galaxies. The companion galaxy doing the "taffy pulling" in this case, NGC 7715, lies just out of the field of view in this image. A very faint bridge of stars extends to the unseen companion. The close encounter has compressed interstellar gas to trigger bursts of star formation seen in bright blue arcs extending around NGC 7714's center. The gravitational disruption of NGC 7714 began between 100 million and 200 million years ago, at the epoch when dinosaurs ruled the Earth. The image was taken with the Wide Field Camera 3 and the Advanced Camera for Surveys in October 2011. Credit: NASA and ESA. Acknowledgment: A. Gal-Yam (Weizmann Institute of Science) NASA image use policy. NASA Goddard Space Flight Center enables NASA’s mission through four scientific endeavors: Earth Science, Heliophysics, Solar System Exploration, and Astrophysics. Goddard plays a leading role in NASA’s accomplishments by contributing compelling scientific knowledge to advance the Agency’s mission. Follow us on Twitter Like us on Facebook Find us on Instagram

  12. Toxic and genotoxic effects of the 2,4-dichlorophenoxyacetic acid (2,4-D)-based herbicide on the Neotropical fish Cnesterodon decemmaculatus.

    PubMed

    Ruiz de Arcaute, C; Soloneski, S; Larramendy, M L

    2016-06-01

    Acute toxicity and genotoxicity of the 54.8% 2,4-D-based commercial herbicide DMA® were assayed on Cnesterodon decemmaculatus (Pisces, Poeciliidae). Whereas lethal effect was used as the end point for mortality, frequency of micronuclei (MNs), other nuclear abnormalities and primary DNA damage evaluated by the single cell gel electrophoresis (SCGE) assay were employed as end points for genotoxicity. Mortality studies demonstrated an LC50 96 h value of 1008 mg/L (range, 929-1070) of 2,4-D. Behavioral changes, e.g., gathering at the bottom of the aquarium, slowness in motion, slow reaction and abnormal swimming were observed. Exposure to 2,4-D within the 252-756 mg/L range increased the frequency of MNs in fish exposed for both 48 and 96 h. Whereas blebbed nuclei were induced in treatments lasting for 48 and 96 h, notched nuclei were only induced in fish exposed for 96 h. Regardless of both concentration and exposure time, 2,4-D did not induce lobed nuclei and binucleated erythrocytes. In addition, we found that exposure to 2,4-D within the 252-756 mg/L range increased the genetic damage index in treatments lasting for either 48 and 96 h. The results represent the first experimental evidence of the lethal and several sublethal effects, including behavioral alterations and two genotoxic properties namely the induction of MNs and primary DNA strand breaks, exerted by 2,4-D on an endemic organism as C. decemmaculatus. Copyright © 2016 Elsevier Inc. All rights reserved.

  13. Reproduction, growth and vertical distribution of the meso- and bathypelagic fish Cyclothone atraria (Pisces: Gonostomatidae) in Sagami Bay, Central Japan

    NASA Astrophysics Data System (ADS)

    Miya, Masaki; Nemoto, Takahisa

    1987-09-01

    The life history and vertical distribution of the meso- and bathypelagic fish Cyclothone atraria (family Gonostomatidae) are described on the basis of about 9800 specimens taken during a series of 20 cruises from December 1982 to November 1985 at a station near the center of Sagami Bay, Central Japan. C. atraria does not undertake overall diel vertical migrations, being concentrated in the lower mesopelagic and bathypelagic zones below 400 m, with peak abundance at about 600 m both day and night. Spawning occurs mainly during the summer and early autumn. C. atraria releases about 500-3000 eggs at once and may spawn several times during its life span. Duration of the egg and larval stages is estimated to be about 6-7 months. C. atraria is protandrous, attaining male maturation in 3 years at about 25 mm standard length (SL) and attaining female maturation in 5-6 years at about 40 mm SL. Length-frequency analysis demonstrated that modal progressions could be followed until about 55 mm SL; however, no length mode that increases with time was observed at 30-35 mm SL, which corresponds to the size of sex reversal. Such modal indistinctness results from rapid growth of individual fishes set free from male breeding activity during protracted spawning season.

  14. Genetic diversity and population structure of bocachico Prochilodus magdalenae (Pisces, Prochilodontidae) in the Magdalena River basin and its tributaries, Colombia

    PubMed Central

    Berdugo, Gilberto Orozco; Narváez Barandica, Juan C.

    2014-01-01

    Prochilodus magdalenae is an endemic freshwater fish that occurs in the Magdalena, Sinú and Atrato hydrographic basins. It has an important economic role and is a food resource for the artisanal fishing communities. Its socioeconomic importance contrasts with the current status of its fisheries, where stocks are being depleted. Considering its importance and lack of information on its genetic structure, we used seven microsatellite markers to assess the genetic structure of wild populations of P. magdalenae. The genetic diversity was assessed and the population genetic structure was estimated through Fst, analysis of molecular variance and Bayesian analysis. A total of 290 alleles were found in all loci throughout all population. The high polymorphism contrasts with the levels of observed heterozygosity (Ho = 0.276), which are the lowest values recorded for the family. We found three populations of bocachico coexisting throughout the studied system, contradicting the hypothesis that freshwater migratory fish form panmictic populations. These results on the genetic structure of P. magdalenae constitute tools for a better understanding of the behavior and biology of this species, contributing to fish management and conservation programs. PMID:24688289

  15. Assessing the impact of swimming exercise and the relative susceptibility of rainbow trout oncorhynchus mykiss (walbaum) and atlantic salmon salmo salar L. following injection challenge with weissella ceti

    USDA-ARS?s Scientific Manuscript database

    All-female rainbow trout and mixed-sex Atlantic salmon (approximately 200 g and 120 g initial weight, respectively) were maintained in small circular tanks in a flow-through system under study conditions for a period of five months. The four tank populations consisted of rainbow trout exposed to ei...

  16. Sudden weaning of angel fish pterophyllum scalare (Lichtenstein) (Pisces; Cichlidae) larvae from brine shrimp (Artemia sp) nauplii to formulated larval feed.

    PubMed

    Herath, Sandamali Sakunthala; Atapaththu, Kerthi Sri Senarathna

    2013-12-01

    This study investigated the effects of sudden weaning of angel fish larvae (Pteraphylum scalari) from Artemia nauplii to commercial larval feed. Four days post hatch (DPH) larvae were reared in four different weaning protocols (TR1-TR4) with triplicates in a complete randomize design. Larvae in TR1 and TR4 were exclusively fed Artemia nauplii and dry feed respectively. In TR2 and TR3, larvae were initially fed Artemia nauplii and suddenly wean to formulated feed on 14 DPH and 7 DPH respectively. The experiment was lasted for 28 days. At the end of the experiment, final mean weight (FW), total length (FL), height (FH), Daily Weight Gain (DWG), Specific Growth Rate (SGR), survival and stress index were compared. Significantly highest (P < 0.05) FW, DWG and SGR were observed in TR1 and TR2 while former values of TR3 were not significantly different from TR1. Highest FL observed in TR1 and TR2 while FL of TR2 was statistically similar to that of TR3. The poorest growth was observed in larvae solely fed formulated feed. Survival and the stress index were independent from weaning methods. Although sudden weaning is possible on 7 DPH, larvae showed comparatively higher growth when switch off to formulate feed on 14 DPH.

  17. Climate change and oceanic barriers: genetic differentiation in Pomatomus saltatrix (Pisces: Pomatomidae) in the North Atlantic Ocean and the Mediterranean Sea.

    PubMed

    Pardiñas, A F; Campo, D; Pola, I G; Miralles, L; Juanes, F; Garcia-Vazquez, E

    2010-11-01

    Nucleotide variation of partial cytochrome b sequences was analysed in the bluefish Pomatomus saltatrix to investigate the population-structuring roles of climate change and oceanic barriers. Western and eastern North Atlantic Ocean populations appeared to be totally isolated, with the latter connected to the Mediterranean Sea within which further structuring occurred. © 2010 The Authors. Journal of Fish Biology © 2010 The Fisheries Society of the British Isles.

  18. Oligomeric protein complexes of apolipoproteins stabilize the internal fluid environment of organism in redfins of the Tribolodon genus [Pisces; Cypriniformes, Cyprinidae].

    PubMed

    Andreeva, Alla M; Serebryakova, Marina V; Lamash, Nina E

    2017-06-01

    One of the most important functions of plasma proteins in vertebrates is their participation in osmotic homeostasis in the organism. Modern concepts about plasma proteins and their capillary filtration are based on a model of large monomeric proteins that are able to penetrate the interstitial space. At the same time, it was revealed that a considerable amount of oligomeric complexes are present in the low-molecular-weight (LM) protein fraction in the extracellular fluids of fishes. The functions of these complexes are unknown. In the present study, we investigated the LM-fraction proteins in the plasma and interstitial fluid (IF) of redfins of the genus Tribolodon. This fish alternatively spends parts of its life cycle in saline and fresh waters. We identified the protein Wap65, serpins and apolipoproteins in this fraction. By combining the methods of 2D-E under native and denaturing conditions with MALDI, we demonstrated that only apolipoproteins formed complexes. We showed that serum apolipoproteins (АроА-I, Аро-14) were present in the form of homooligomeric complexes that were dissociated with the release of monomeric forms of proteins in the course of capillary filtration to IF. Dissociation of homooligomers is not directly correlated with the change in salinity but is correlated with seasonal dynamics. We found that there was a significant decrease in the total protein concentration in IF relative to plasma. Therefore, we suggested that dissociation of homooligomeric complexes from various apolipoproteins supports the isoosmoticity of extracellular fluids relative to capillary wall stabilization through a fluid medium in fish. Copyright © 2017 Elsevier Inc. All rights reserved.

  19. Morphological re-description and new geographical records for three digenean parasites infecting African sharptooth catfish Clarias gariepinus (Pisces: Clariidae) in Egypt.

    PubMed

    Abdel-Gaber, Rewaida; Sakarn, Thabet; El-Shahawi, Gamal; El-Fayoumi, Hoda; Mohammed, Rana

    2016-11-01

    Sixty specimens of African sharptooth catfish Clarias gariepinus (Clariidae) were collected during the period of March 2014-February 2015 from boat landing sites and fishermen of the River Nile at Beni Suef Governorate, Egypt, and examined for the presence of digenean parasites. The morphology of these parasites was studied by using light microscopy to describe morphological and morphometrically measurements for different body parts. Three digenean species belonging to three different genera were collected from various organs within the examined fish species. A certain degree of site specificity was also observed, with Thaparotrema botswanensis being found only in the gall bladder of C. gariepinus, while both Pseudoholorchis clarii and Glossidium pedatum were found only in the intestine and thus seem to occupy a certain niche within their host. This study represent as the first record of T. botswanensis and G. pedatum from C. gariepinus, as well as the first report of the genera from the River Nile in Egypt. In addition, re-description of P. clarii clarifies measurements for some body parts.

  20. Intersex and liver alterations induced by long-term sublethal exposure to 17α-ethinylestradiol in adult male Cnesterodon decemmaculatus (Pisces: Poeciliidae).

    PubMed

    Young, Brian Jonathan; López, Gabriela Carina; Cristos, Diego Sebastián; Crespo, Diana Cristina; Somoza, Gustavo Manuel; Carriquiriborde, Pedro

    2017-07-01

    The aim of the present study was to assess the responses of the gonopodium morphology and the gonadal and liver histology of adult male Cnesterodon decemmaculatus to sublethal long-term exposure concentrations of 17α-ethinylestradiol (EE2). Two experiments were conducted exposing the fish to waterborne concentrations of EE2 ranging from 20 ng/L to 200 ng/L for 8 wk, 12 wk, and 16 wk. Intersex gonads were observed after 8 wk and 16 wk in fish exposed to 200 ng EE2/L and 100 ng EE2/L, respectively. Oocytes' development from testis germ cells and replacement of the efferent duct periodic acid-Schiff-positive secretion surrounding spermatozeugmata by parenchymal tissue and duct structure alterations were the major observed changes in the gonads. In contrast, no response was observed in the gonopodium morphology. Liver histology was also altered, showing increasing steatosis, single-cell necrosis to generalized necrosis, and disruption of acinar organization from 100 ng EE2/L to 200 ng EE2/L. In summary, the present results showed that although EE2 was not able to alter the morphology of a developed gonopodium, it was capable of inducing development of testicular oocytes in adult male C. decemmaculatus at environmentally relevant concentrations. Thus, externally normal but intersex C. decemmaculatus males would be expected in the wastewater-receiving streams that the species inhabits. According to the literature, the present study would be the first indicating estrogen-induced intersex in adult male poeciliid. Environ Toxicol Chem 2017;36:1738-1745. © 2016 SETAC. © 2016 SETAC.

  1. Evidence for the Stepwise Stress Model: Gambusia holbrooki and Daphnia magna under acid mine drainage and acidified reference water stress.

    PubMed

    Gerhardt, Almut; Janssens de Bisthoven, Luc; Soares, Amadeu M V

    2005-06-01

    The Stepwise Stress Model (SSM) states that a cascade of regulative behavioral responses with different intrinsic sensitivities and threshold values offers increased behavioral plasticity and thus a wider range of tolerance for environmental changes or pollutant exposures. We tested the SSM with a widely introduced fish Gambusia holbrooki (Girard) (Pisces, Poeciliidae) and the standard laboratory test species Daphnia magna Straus (Crustacea, Daphniidae). The stress was simulated by short-term exposure to acid mine drainage (AMD) and to acidified reference water (ACID). Recording of behavioral responses with the multispecies freshwater biomonitor (MFB) generated continuous time-dependent dose-response data that were modeled in three-dimensional (3D) surface plots. Both the pH-dependent mortalities and the strong linear correlations between pH and aqueous metals confirmed the toxicity of the AMD and ACID gradients, respectively, for fish and Daphnia, the latter being more sensitive. AMD stress at pH < or = 5.5 amplified circadian rhythmicity in both species, while ACID stress did so only in G. holbrooki. A behavioral stepwise stress response was found in both species: D. magna decreased locomotion and ventilation (first step) (AMD, ACID), followed by increased ventilation (second step) (AMD). G. holbrooki decreased locomotion (first step) (AMD, ACID) and increased ventilation at intermediate pH levels (second step) (AMD). Both species, although from different taxonomic groups and feeding habits, followed the SSM, which might be expanded to a general concept for describing the behavioral responses of aquatic organims to pollution. Stepwise stress responses might be applied in online biomonitors to provide more sensitive and graduated alarm settings, hence optimizing the "early warning" detection of pollution waves.

  2. Multicolor Observations of ASAS 002511+1217.2

    NASA Astrophysics Data System (ADS)

    Golovin, Alex; Price, Aaron; Templeton, Matthew; Cook, Lewis; Crawford, Timothy; Henden, Arne; James, Robert; Koppelman, Michael; Nelson, Peter Robert; Oksanen, Arto; Pavlenko, Elena; Pickard, Roger; Quinn, Nick; Starkey, Don Ray

    2005-04-01

    ASAS 002511+1217.2 is a newly discovered cataclysmic variable in Pisces constellation. It was discovered by G. Pojmanski and the ASAS-3 survey on 11.203 (UT) Sept., 2004. The new variable is within the uncertainly boundaries of RX J0025.1+1217, 1RXS J002510.8+121725, 2MASS J00251111+1217121. The AAVSO has collected 31839 CCD observations of ASAS 002511+1217.2 over a 55 day period following its outburst. This is CCD-lightcurve, based on our observations. The errors depend on the observer, but typically can be estimated to be +/- 0.02 for CCD observations. It is interesting to note that so-called an echo-outburst occurred, reaching a maximum at 20 days after super-outburst' maximum. Before combining data for statistical analysis, each observer's data set was individually transformed to an uniform zero-point by subtracting a linear fit from each night's observations. This was done so that we could remove the overall trend of outburst, and to combine all observations into a single data set. The analysis of CCD observations by the Lalfer-Kinman method has enabled us to show the presence of the 0.05701 period of superhumps. The periodogram presents the peak, which corresponds to the mentioned period. This figure shows an example superhump phase diagram with the estimated period. As an example of the superhump profile, we plotted on the phase diagram the superhumps, observed on 20 Sept., by Elena Pavlenko at the Crimean Astrophysical Observatory. The results of this observing-campaign were recently published at 4th of March in Informational Bulletin on Variable Stars of the International Astronomical Union at 5611 issue.

  3. Neoechinorhynchus (Neoechinorhynchus) chimalapasensis n. sp. (Acanthocephala: Neoechinorhynchidae) from the freshwater fish Awaous banana (Valenciennes) (Gobiidae) in Mexico.

    PubMed

    Salgado-Maldonado, Guillermo; Caspeta-Mandujano, Juan Manuel; Martínez-Ramírez, Emilio

    2010-03-01

    Neoechinorhynchus (Neoechinorhynchus) chimalapasensis n. sp. (Eoacanthocephala: Neoechinorhynchidae) is described from the intestine of Awaous banana (Valenciennes) (Pisces: Gobiidae) collected in the Río Negro, a tributary in the upper Río Coatzacoalcos basin, Santa María Chimalapa, Oaxaca State, Mexico. It is the third species of Neoechinorhynchus Stiles & Hassall, 1905 described from Mexican freshwater fishes, although 36 other species are known from freshwater fishes in the Americas. Like four other species of Neoechinorhynchus from freshwater fishes in North America and Mexico, N. (N.) limi Muzzall & Buckner, 1982, (N.) rutili (Müller, 1780) Stiles & Hassall, 1905, N. (N.) salmonis Ching, 1984 and N. (N.) roseus Salgado-Maldonado, 1978, males and females of the new species are less than 20 mm in length, lack conspicuous sexual dimorphism in size, have a small proboscis of about 0.1 mm in length with the largest hooks being the anteriormost, about 30-90 microm in length and of equal size, and have subequal lemnisci, larger than the proboscis receptacle but still relatively short and, in males, generally restricted to a position considerably anterior to the testes. The new species is closest to N. (N.) roseus, but it is distinguished from it by having: (1) a slightly larger cylindrical proboscis with almost parallel sides versus a globular proboscis with a rounded tip which is shorter and somewhat wider in N. (N.) roseus; (2) smaller but robust anterior proboscis hooks that do not reach the equatorial level or extend beyond the hooks of the middle circle as in N. (N.) roseus; and (3) the female gonopore situated ventrally subterminal, as opposed to being a significant distance anteriorly to the posterior extremity in N. (N.) roseus.

  4. Carbon balance of China constrained by CONTRAIL aircraft CO2 measurements

    NASA Astrophysics Data System (ADS)

    Jiang, F.; Wang, H. M.; Chen, J. M.; Machida, T.; Zhou, L. X.; Ju, W. M.; Matsueda, H.; Sawa, Y.

    2014-09-01

    Terrestrial carbon dioxide (CO2) flux estimates in China using atmospheric inversion method are beset with considerable uncertainties because very few atmospheric CO2 concentration measurements are available. In order to improve these estimates, nested atmospheric CO2 inversion during 2002-2008 is performed in this study using passenger aircraft-based CO2 measurements over Eurasia from the Comprehensive Observation Network for Trace gases by Airliner (CONTRAIL) project. The inversion system includes 43 regions with a focus on China, and is based on the Bayesian synthesis approach and the TM5 transport model. The terrestrial ecosystem carbon flux modeled by the Boreal Ecosystems Productivity Simulator (BEPS) model and the ocean exchange simulated by the OPA-PISCES-T model are considered as the prior fluxes. The impacts of CONTRAIL CO2 data on inverted China terrestrial carbon fluxes are quantified, the improvement of the inverted fluxes after adding CONTRAIL CO2 data are rationed against climate factors and evaluated by comparing the simulated atmospheric CO2 concentrations with three independent surface CO2 measurements in China. Results show that with the addition of CONTRAIL CO2 data, the inverted carbon sink in China increases while those in South and Southeast Asia decrease. Meanwhile, the posterior uncertainties over these regions are all reduced (2-12%). CONTRAIL CO2 data also have a large effect on the inter-annual variation of carbon sinks in China, leading to a better correlation between the carbon sink and the annual mean climate factors. Evaluations against the CO2 measurements at three sites in China also show that the CONTRAIL CO2 measurements may have improved the inversion results.

  5. [Checklist of fishes of Yunnan].

    PubMed

    Chen, Xiao-Yong

    2013-08-01

    Based on extant literatures and taking into accounts updated results of taxonomy and phylogeny, we have updated this checklist of fishes present in Yunnan, including the number of taxa and drainage areas. As of 2013, there were 13 orders, 42 families, 198 genera and 620 valid species recorded in Yunnan Province, of which 586 were native species, 34 alien species, 254 species endemic to Yunnan, and 152 species only occuring in Yunnan within China. The number of species in Yunnan accounts for 39.17% of China's total fish species (of which there are 1 583 recorded freshwater fish species according to data present in Fishbase), and of these 6 families and 66 genera only occur in Yunnan. The number of fish species of the six major drainages in Yunnan were as follows: 202 in Pearl River, 183 in Lancangjiang River (upper Mekong), 142 in Jinshajiang River (upper Yangtze), 120 in Red River, 84 in Irrawaddy Drainage, 77 in Nujiang-Salween Drainage. There are also 99 endangered species of fish occurring in Yunnan, among them 23 species protected by the national and/or the provincial government, including 2 species of national key protected animal class one, 4 species of national key protected animal class two, 17 species of Yunnan provincial protected animal. Totally, 43 species were listed in China Red Data Book of Endangered Animals, Pisces; 73 species were listed in China Species Red List Vol. 1; 50 species were listed in endangered categories of IUCN Red List; and 3 species were listed in the Appendix 2 of CITES. The Chinese name, Latin name, synomyns, distribution and literatures of the 620 species of fishes in Yunnan are listed.

  6. Contrasting Genetic Structure and Diversity of Galaxias maculatus (Jenyns, 1848) Along the Chilean Coast: Stock Identification for Fishery Management.

    PubMed

    González-Wevar, Claudio; Salinas, Pilar; Hüne, Mathias; Segovia, Nicolás; Vargas-Chacoff, Luis; Oda, Esteban; Poulin, Elie

    2015-01-01

    Galaxias maculatus (Pisces: Galaxiidae) commonly known as "puye" has a disjunct distribution along the Southern Hemisphere including landlocked and migratory populations at latitudes over 30°S in South America, Australia, Tasmania, and New Zealand. Chilean artisanal fishery of G. maculatus has become less important as a resource due to multiple factors including overexploitation, pollution, introduction of predators, and competitors. At the same time, the current conservation status of the species in Chile is still uncertain. Here, we used mtDNA control region sequences (925bp) to investigate main patterns of genetic diversity and structure in populations from 2 biogeographic areas along the Chilean coast. Extremely high levels of genetic diversity characterize the species, suggesting a low amount of influence of the last glacial cycle over its demography compared with other studies in freshwater and marine South American fishes. However, we recognized contrasting genetic patterns between the Intermediate Area (between 30°S and 42°S) and the Magellanic Province (between 42°S and 56°S). On the one hand, over a narrow geographical range (<200 km) each Intermediate Area estuarine population constitutes a different genetic unit. On the other hand, the Magellanic populations of the species exhibited low levels of differentiation in an area extending for more than 500 km. Such differences may be a consequence of different coastal configurations, oceanographic regimes, and Quaternary glacial histories. Finally, our results support the existence of different stock units for G. maculatus and this information should be integrated in future management strategies and aquaculture programs for this species. © The American Genetic Association 2015. All rights reserved. For permissions, please e-mail: journals.permissions@oup.com.

  7. Benthic megafaunal community structure of cobalt-rich manganese crusts on Necker Ridge

    NASA Astrophysics Data System (ADS)

    Morgan, Nicole B.; Cairns, Stephen; Reiswig, Henry; Baco, Amy R.

    2015-10-01

    In the North Pacific Ocean, the seamounts of the Hawaiian Archipelago and the Mid-Pacific Mountains are connected by Necker Ridge, a 600 km-long feature spanning a depth range of 1400-4000 m. The Necker Ridge is a part of a large area of the central and western Pacific under consideration for cobalt-rich manganese crust mining. We describe the fauna and community structure of the previously unsampled Necker Ridge based on explorations with the submersible Pisces IV. On five pinnacles and a portion of the Ridge ranging from 1400 to 2000 m deep, 27 transects were recorded using HD video, and voucher specimens were collected to aid in species identification. The video was analyzed to identify and count the megafauna found on each transect and to characterize the substrate. Diversity increased from south to north along the feature. There was a significant difference in community structure between southern and northern pinnacles, with southern pinnacles dominated by crinoids of the Family Charitometridae and northern pinnacles dominated by octocorals, especially the Families Isididae and Chrysogorgiidae. DistLM demonstrated a correlation between community structure on the pinnacles and at least six environmental variables, including latitude, sediment cover, and oxygen concentration, but not including depth. The discontinuous and patchy nature of these distinct megafaunal communities highlights growing evidence that cobalt-rich seamounts are highly heterogeneous habitats, and that managing seamounts may require more complex regulations than treating them as a single ecological unit. These results suggest that extensive community analysis should occur at a given site to determine management priority areas, prior to consideration of that site for exploitation of natural resources.

  8. THE ARECIBO LEGACY FAST ALFA SURVEY. V. THE H I SOURCE CATALOG OF THE ANTI-VIRGO REGION AT {delta} = +27{sup 0}

    DOE Office of Scientific and Technical Information (OSTI.GOV)

    Saintonge, Amelie; Giovanelli, Riccardo; Haynes, Martha P.

    We present a second catalog of H I sources detected in the Arecibo Legacy Fast ALFA Survey. We report 488 detections over 135 deg{sup 2}, within the region of the sky having 22 h < {alpha} < 03 h and +26{sup 0} < {delta} < +28{sup 0}. We present here the detections that have either (a) S/N>6.5, where the reliability of the catalog is better than 95% or (b) 5.0 < S/N < 6.5 and a previously measured redshift that corroborates our detection. Of the 488 objects presented here, 49 are high-velocity clouds or clumps thereof with negative heliocentric recessionmore » velocities. These clouds are mostly very compact and isolated, while some of them are associated with large features such as Wright's Cloud or the northern extension of the Magellanic Stream. The remaining 439 candidate detections are identified as extragalactic objects and have all been matched with optical counterparts. Five of the six galaxies detected with M{sub Hi}<10{sup 7.5} M{sub sun} are satellites of either the NGC672/IC1727 nearby galaxy pair or their neighboring dwarf irregular galaxy NGC784. The data of this catalog release include a slice through the Pisces-Perseus foreground void, a large nearby underdensity of galaxies. We report no detections within the void, where our catalog is complete for systems with H i masses of 10{sup 8} M{sub sun}. Gas-rich, optically-dark galaxies do not seem to constitute an important void population, and therefore do not suffice for producing a viable solution to the void phenomenon.« less

  9. Bothriocephalus pearsei n. sp. (Cestoda: Pseudophyllidea) from cenote fishes of the Yucatan Peninsula, Mexico.

    PubMed

    Scholz, T; Vargas-Vázquez, J; Moravec, F

    1996-10-01

    The cestode Bothriocephalus pearsei n. sp. is described from the intestine of the cichlid Cichlasoma urophthalmus (Günther) from cenote (= sinkhole) Zaci near Valladolid, Yucatan, Mexico. The pimelodid catfish Rhamdia guatemalensis Günther, which also harbored conspecific cestodes, seems to represent accidental or postcyclic host of B. pearsei. The new species differs from congeners mainly by the morphology of the scolex, which is clavate, with the maximum width in its middle part, has a distinct but weakly muscular apical disc; 2 short and wide bothria distinctly demarcated in their anterior part, becoming indistinct posteriorly in the middle part of the scolex, and 2 elongate, lateral grooves. In addition to the scolex morphology, the new species can be differentiated from Bothriocephalus species parasitizing North American freshwater fishes as follows: B. claviceps (Goeze, 1782), a specific parasite of eels in the Holarctic, B. cuspidatus Cooper, 1917, occurring mostly in perciform fishes in North America, B. musculosus Baer, 1937 found in the cichlid Cichlasoma biocellata (Regan) (= C. octofasciatum (Regan)), and B. texomensis Self, 1954, described from Hiodon alosoides (Rafinesque), are much larger, with strobilae consisting of relatively short and very wide proglottids versus small-sized strobila (length 26-32 mm) composed of about 70 proglottids, which are only slightly wider than they are long (ratio 1:1-3), rectangular, or even longer than wide in the last proglottids in B. pearsei. Bothriocephalus formosus Mueller and Van Cleave, 1932, described from Percopsis omiscomaycus (Walbaum) in the USA, can be distinguished from B. pearsei, besides the different shape of the scolex, by the distribution of vitelline follicles, which are not separated into 2 lateral fields and are present along the midline of proglottids in the former species. Bothriocephalus acheilognathi, a widely distributed parasite of fishes of many families, in particular of cyprinids

  10. Growth and physiological responses to surgical and gastric radio transmitter implantation techniques in subyearling chinook salmon (Oncorhynchus tshawytscha)

    USGS Publications Warehouse

    Martinelli, Theresa L.; Hansel, H.C.; Shively, R.S.

    1998-01-01

    We examined the effects of surgical and gastric transmitter implantation techniques on the growth, general physiology and behavior of 230 subyearling chinook salmon (Oncorhynchus tshawytscha, Walbaum) (100 mm-154 mm fork length). The transmitter weighed 1.3 g in air (0.9 g in water) and comprised, on average, 6% of the body weight of the fish (in air). Individuals were randomly assigned to an experimental group (control, surgical or gastric) and a sampling period (day 5 or day 21). Relative growth rate was expressed as% body weight gained/day. General condition was assessed by necropsy. Physiological response variables included hematocrit, leucocrit and plasma protein concentration. The mean relative growth rates of control, surgical and gastric fish were not significantly different at day 5. By day 21, the gastric group had a significantly lower relative growth rate (1.3%) as compared to the surgical group (1.8%) and the control group (1.9%) (P = 0.0001). Mean hematocrit values were significantly lower in the surgical (41.8%) and gastric (42.2%) groups as compared to controls (47.3%) at day 5 (P = 0.01), but all were within normal range for salmonids. No significant differences in hematocrit values were detected at day 21. Leucocrit values for all groups were ??? 1% in 99% of the fish. Both tagged groups had significantly lower mean plasma protein levels as compared to controls at day 5 (P = 0.001) and day 21 (P = 0.0001). At day 21 the gastric group (64.4 g 100 m1-1) had significantly lower mean plasma protein levels than the surgical group (68.8 g 100 ml-1) (P = 0.0001). Necropsies showed decreasing condition of gastrically tagged fish over time, and increasing condition of surgical fish. Paired releases of surgically and gastrically implanted yearling chinook salmon in the lower Columbia River in spring, 1996 revealed few significant differences in migration behavior through two reservoirs. We conclude that gastrically implanted fish show decreased growth and

  11. Fish communities and related environmental conditions of the lower Boise River, southwestern Idaho, 1974-2004

    USGS Publications Warehouse

    MacCoy, Dorene E.

    2006-01-01

    Within the last century, the lower Boise River has been transformed from a meandering, braided, gravel-bed river that supported large runs of salmon to a channelized, regulated, urban river that provides flood control and irrigation water to more than 1,200 square miles of land. An understanding of the current status of the river's fish communities and related environmental conditions is important to support the ongoing management of the Boise River. Therefore, fish community data from the U.S. Geological Survey and the Idaho Department of Fish and Game collected since 1974 were analyzed to describe the status of fish communities in the lower Boise River. Each set of data was collected to address different study objectives, but is combined here to provide an overall distribution of fish in the lower Boise River over the last 30 years. Twenty-two species of fish in 7 families have been identified in the lower Boise River-3 salmonidae, trout and whitefish; 2 cottidae, sculpins; 3 catostomidae, suckers; 7 cyprinidae, minnows; 4 centrarchidae, sunfish; 2 ictaluridae, catfish; and 1 cobitidae, loach. Analysis of fish community data using an Index of Biotic Integrity (IBI) for Northwest rivers shows a decrease in the biotic integrity in a downstream direction, with the lowest IBI near the mouth of the Boise River. The number of tolerant and introduced fish were greater in the lower reaches of the river. Changes in land use, habitat, and water quality, as well as regulated streamflow have affected the lower Boise River fish community. IBI scores were negatively correlated with maximum instantaneous water temperature, specific conductance, and suspended sediment; as well as the basin land-use metrics, area of developed land, impervious surface area, and the number of major diversions upstream of a site. Fish communities in the upstream reaches were dominated by piscivorous fish, whereas the downstream reaches were dominated by tolerant, omnivorous fish. The percentage of

  12. Development and validation of a quantitative PCR to detect Parvicapsula minibicornis and comparison to histologically ranked infection of juvenile Chinook salmon, Oncorhynchus tshawytscha (Walbaum), from the Klamath River, USA

    USGS Publications Warehouse

    True, K.; Purcell, M.K.; Foott, J.S.

    2009-01-01

    Parvicapsula minibicornis is a myxosporean parasite that is associated with disease in Pacific salmon during their freshwater life history phase. This study reports the development of a quantitative (real-time) polymerase chain reaction (QPCR) to detect P. minibicornis DNA. The QPCR assay targets the 18S ribosomal subunit gene. A plasmid DNA control was developed to calibrate cycle threshold (CT) score to plasmid molecular equivalent (PME) units, a measure of gene copy number. Assay validation revealed that the QPCR was sensitive and able to detect 50 ag of plasmid DNA, which was equivalent to 12.5 PME. The QPCR assay could detect single P. minibicornis actinospores well above assay sensitivity, indicating a single spore contains at least 100 times the 18S DNA copies required for detection. The QPCR assay was repeatable and highly specific; no detectable amplification was observed using DNA from related myxozoan parasites. The method was validated using kidney tissues from 218 juvenile Chinook salmon sampled during the emigration period of March to July 2005 from the Klamath River. The QPCR assay was compared with histological examination. The QPCR assay detected P. minibicornis infection in 88.1% of the fish sampled, while histological examination detected infection in 71.1% of the fish sampled. Good concordance was found between the methods as 80% of the samples were in agreement. The majority of the disconcordant fish were positive by QPCR, with low levels of P. minibicornis DNA, but negative by histology. The majority of the fish rated histologically as having subclinical or clinical infections had high QPCR levels. The results of this study demonstrate that QPCR is a sensitive quantitative tool for evaluating P. minibicornis infection in fish health monitoring studies. ?? 2008 Blackwell Publishing Ltd.

  13. Two new species of Gyrodactylus von Nordmann, 1832 from Profundulus oaxacae (Pisces: Profundulidae) from Oaxaca, Mexico, studied by morphology and molecular analyses.

    PubMed

    García-Vásquez, Adriana; Pinacho-Pinacho, Carlos Daniel; Martínez-Ramírez, Emilio; Rubio-Godoy, Miguel

    2018-08-01

    In the present study, two new species of Gyrodactylus are described from Profundulus oaxacae, a fish endemic to the Pacific slope of Oaxaca State, Mexico. Fishes were collected within their distribution range in 5 localities in the Atoyac-Verde River. Gyrodactylus montealbani n. sp. and G. zapoteco n. sp. were erected and characterized morphologically (sclerites of the attachment apparatus and the male copulatory organ) and molecularly (sequences of the Internal Transcribed Spacer region of rDNA). The haptoral sclerites of the new species are similar to those of Gyrodactylus iunuri and Gyrodactylus tepari, both recently described from the goodeid fish Goodea atripinnis, from the Mexican States of Jalisco and Querétaro, respectively; and to Gyrodactylus xtachuna described from the poeciliid Poeciliopsis gracilis in Veracruz State, Mexico - nonetheless, these species can all be discriminated based on their marginal hook morphology. Specimens of G. montealbani n. sp. and G. zapoteco n. sp. were sequenced, and were aligned with sequences of 25 other Gyrodactylus spp. Both Maximum likelihood and Bayesian inference analyses indicated that the two new species are members of independent, well-supported lineages - these are the first Gyrodactylus species described from Profundulus oaxacae. Copyright © 2018 Elsevier B.V. All rights reserved.

  14. Does morphology predict trophic niche differentiation? Relationship between feeding habits and body shape in four co-occurring juvenile species (Pisces: Perciformes, Sparidae)

    NASA Astrophysics Data System (ADS)

    Ventura, Daniele; Bonhomme, Vincent; Colangelo, Paolo; Bonifazi, Andrea; Jona Lasinio, Giovanna; Ardizzone, Giandomenico

    2017-05-01

    Feeding habits, diet overlap and morphological correlates of four juvenile species of the genus Diplodus were investigated during their settlement periods, along the Tyrrhenian coast. Stomach content analysis showed that the diets of D. sargus and D. puntazzo mainly comprised benthic prey such as harpacticoid copepods, amphipods and polychaetes. On the other hand, D. vulgaris and D. annularis fed mainly on planktonic prey such as ciclopoids, calanoids copepods and fish larvae. A biologically significant diet overlap, calculated using the Schoener index, was recorded between D. sargus and D. puntazzo and between D. vulgaris and D. annularis. Morphological characters related to feeding such as gape height and gut length with their relative growth patterns suggested that different trophic preferences have led to a morphological diversification of feeding structures. Therefore, a geometric morphometric outline method, namely Elliptic Fourier Analysis (EFA) was used to examine shape modification of the head and body regions. The multivariate analyses performed on shape descriptors demonstrated that the four species were morphologically distinct due to different feeding habits: the two species which feed mainly on benthic prey presented a discoidal shape, with broad profiles and rounded head; by contrast, the other two species which relied mostly on planktonic prey, presented a streamlined and more elongated body shape.

  15. A simple mathematical model based on biomarkers in stress-resistant catfish species, Sciades herzbergii (Pisces, Ariidae), in São Marcos Bay, Brazil.

    PubMed

    Carvalho Neta, Raimunda Nonata Fortes; Torres Junior, Audalio Rebelo; Silva, Dilson; Cortez, Célia Martins

    2014-12-01

    We present a refinement of our model describing the association between enzyme activity and histopathological lesions in the catfish, Sciades herzbergii from a polluted port. The fish were sampled from a port known to be contaminated with heavy metals and organic compounds and from a natural reserve in São Marcos Bay, Brazil. Two biomarkers, hepatic glutathione S-transferase (GST) activity and histopathological lesions, in gills and liver tissue were measured. The values for GST activity were modeled with the occurrence of branchial and hepatic lesions by fitting a third-order polynomial. Results from the mathematical model indicate that GST activity has a strong polynomial relationship with the occurrence of branchial and hepatic lesions in both wet and the dry seasons but only at the polluted port site. The model developed in this study indicates that branchial and hepatic lesions are initiated when GST activity reaches 2.17 μmol min(-1) mg protein(-1). Beyond this limit, GST activity decreased to very low levels and irreversible histopathological lesions occurred. This mathematical model based on two biomarkers (histopathological lesions and enzyme activity) in catfish provides a realistic approach to analyze stress induced by contaminants.

  16. Genetic and Morphological Variation of the Forkbeard, Phycis phycis (Pisces, Phycidae): Evidence of Panmixia and Recent Population Expansion along Its Distribution Area

    PubMed Central

    Rodrigues, Ana Sofia B.; Sequeira, Vera; Neves, Ana; Paiva, Rafaela Barros

    2016-01-01

    The knowledge of population structure of a species is essential to effectively assess and manage fisheries. In the present study, genetics, by mitochondrial DNA cytochrome b sequence analysis, and body geometric morphometrics were used to evaluate the existence of distinct populations of the forkbeard (Phycis phycis), an important commercial species in several European countries, especially Portugal and Spain. For geometric morphometric analysis, specimens were collected in the Northeast Atlantic Ocean—Azores, Madeira and mainland Portugal, and for genetic analysis, these samples were complemented with samples collected in the Mediterranean Sea—Spain, Italy and Croatia, in order to cover the entire distribution area of the species. Body shape of the forkbeard from the Northeast Atlantic was found to be highly variable. This variation was probably associated with different environmental factors between the study areas. Despite morphological variation, a low genetic differentiation between samples from different areas was found, most likely due to gene flow that occurred in the past or with the demographic history of the species. Moreover, the presence of unique haplotypes in the Northeast Atlantic and in the Mediterranean suggests that recent gene flow between populations from these areas should be limited. Altogether, a high haplotype diversity, a low nucleotide diversity, a “star-like” network and the results of the mismatch distribution, indicate a possible signature of recent population expansions, which probably started during the end of the Last Glacial Maximum and led to the colonization of the Northeast Atlantic and the Mediterranean. PMID:27941988

  17. THE GRAY NEEDLE: LARGE GRAINS IN THE HD 15115 DEBRIS DISK FROM LBT /PISCES/Ks AND LBTI /LMIRcam/L' ADAPTIVE OPTICS IMAGING

    DOE Office of Scientific and Technical Information (OSTI.GOV)

    Rodigas, Timothy J.; Hinz, Philip M.; Vaitheeswaran, Vidhya

    We present diffraction-limited Ks band and L' adaptive optics images of the edge-on debris disk around the nearby F2 star HD 15115, obtained with a single 8.4 m primary mirror at the Large Binocular Telescope. At the Ks band, the disk is detected at signal-to-noise per resolution element (SNRE) {approx} 3-8 from {approx}1 to 2.''5 (45-113 AU) on the western side and from {approx}1.''2 to 2.''1 (63-90 AU) on the east. At L' the disk is detected at SNRE {approx} 2.5 from {approx}1 to 1.''45 (45-90 AU) on both sides, implying more symmetric disk structure at 3.8 {mu}m. At bothmore » wavelengths the disk has a bow-like shape and is offset from the star to the north by a few AU. A surface brightness asymmetry exists between the two sides of the disk at the Ks band, but not at L'. The surface brightness at the Ks band declines inside 1'' ({approx}45 AU), which may be indicative of a gap in the disk near 1''. The Ks - L' disk color, after removal of the stellar color, is mostly gray for both sides of the disk. This suggests that scattered light is coming from large dust grains, with 3-10 {mu}m sized grains on the east side and 1-10 {mu}m dust grains on the west. This may suggest that the west side is composed of smaller dust grains than the east side, which would support the interpretation that the disk is being dynamically affected by interactions with the local interstellar medium.« less

  18. Bioavailability of Pb and Zn from mine tailings as indicated by erythrocyte aminolevulinic acid dehydratase (ALA-D) activity in suckers (Pisces: catostomidae)

    USGS Publications Warehouse

    Schmitt, Christopher J.; Dwyer, F. James; Finger, Susan E.

    1984-01-01

    The activity of the erythrocyte enzyme δ-aminolevulinic acid dehydratase (ALA-D) was measured in 35 catostomids (black redhorse, Moxostoma duquesnei; golden redhorse, M. erythrurum; northern hogsucker, Hypentelium nigricans) collected from three sites on a stream contaminated with Pb-, Cd-, and Zn-rich mine tailings and from an uncontaminated site upstream. Enzyme activity was expressed in terms of hemoglobin (Hb), DNA, and protein concentrations; these variables can be determined in the laboratory on once-frozen blood samples. Concentrations of Pb and Zn in blood and of Pb in edible tissues were significantly higher, and ALA-D activity was significantly lower, at all three contaminated sites than upstream. At the most contaminated site, ALA-D activity was 62–67% lower than upstream. Lead concentrations in the edible tissues and in blood were positively correlated (r = 0.80), whereas ALA-D activity was negatively correlated with Pb in blood (r = −0.70) and in edible tissues (r = −0.59). Five statistically significant relations between Pb and Zn in blood and ALA-D activity were determined. The two models that explained the highest percentage (> 74%) of the total variance also included factors related to Hb concentration. All five significant models included negative coefficients for variables that represented Pb in blood and positive coefficients for Zn in blood. The ALA-D assay with results standardized to Hb concentration represents an expedient alternative to the more traditional hematocrit standardization, and the measurement of ALA-D activity by this method can be used to document exposure of fish to environmental Pb.

  19. The NSF Undergraduate ALFALFA Team: Partnering with Arecibo Observatory to Offer Undergraduate and Faculty Extragalactic Radio Astronomy Research Opportunities

    NASA Astrophysics Data System (ADS)

    Ribaudo, Joseph; Koopmann, Rebecca A.; Haynes, Martha P.; Balonek, Thomas J.; Cannon, John M.; Coble, Kimberly A.; Craig, David W.; Denn, Grant R.; Durbala, Adriana; Finn, Rose; Hallenbeck, Gregory L.; Hoffman, G. Lyle; Lebron, Mayra E.; Miller, Brendan P.; Crone-Odekon, Mary; O'Donoghue, Aileen A.; Olowin, Ronald Paul; Pantoja, Carmen; Pisano, Daniel J.; Rosenberg, Jessica L.; Troischt, Parker; Venkatesan, Aparna; Wilcots, Eric M.; ALFALFA Team

    2017-01-01

    The NSF-sponsored Undergraduate ALFALFA (Arecibo Legacy Fast ALFA) Team (UAT) is a consortium of 20 institutions across the US and Puerto Rico, founded to promote undergraduate research and faculty development within the extragalactic ALFALFA HI blind survey project and follow-up programs. The objective of the UAT is to provide opportunities for its members to develop expertise in the technical aspects of observational radio spectroscopy, its associated data analysis, and the motivating science. Partnering with Arecibo Observatory, the UAT has worked with more than 280 undergraduates and 26 faculty to date, offering 8 workshops onsite at Arecibo (148 undergraduates), observing runs at Arecibo (69 undergraduates), remote observing runs on campus, undergraduate research projects based on Arecibo science (120 academic year and 185 summer projects), and presentation of results at national meetings such as the AAS (at AAS229: Ball et al., Collova et al., Davis et al., Miazzo et al., Ruvolo et al, Singer et al., Cannon et al., Craig et al., Koopmann et al., O'Donoghue et al.). 40% of the students and 45% of the faculty participants have been women and members of underrepresented groups. More than 90% of student alumni are attending graduate school and/or pursuing a career in STEM. 42% of those pursuing graduate degrees in Physics or Astronomy are women.In this presentation, we summarize the UAT program and the current research efforts of UAT members based on Arecibo science, including multiwavelength followup observations of ALFALFA sources, the UAT Collaborative Groups Project, the Survey of HI in Extremely Low-mass Dwarfs (SHIELD), and the Arecibo Pisces-Perseus Supercluster Survey (APPSS). This work has been supported by NSF grants AST-0724918/0902211, AST-075267/0903394, AST-0725380, AST-121105, and AST-1637339.

  20. The response of abyssal organisms to low pH conditions during a series of CO2-release experiments simulating deep-sea carbon sequestration

    NASA Astrophysics Data System (ADS)

    Barry, J. P.; Buck, K. R.; Lovera, C.; Brewer, P. G.; Seibel, B. A.; Drazen, J. C.; Tamburri, M. N.; Whaling, P. J.; Kuhnz, L.; Pane, E. F.

    2013-08-01

    The effects of low-pH, high-pCO2 conditions on deep-sea organisms were examined during four deep-sea CO2 release experiments simulating deep-ocean C sequestration by the direct injection of CO2 into the deep sea. We examined the survival of common deep-sea, benthic organisms (microbes; macrofauna, dominated by Polychaeta, Nematoda, Crustacea, Mollusca; megafauna, Echinodermata, Mollusca, Pisces) exposed to low-pH waters emanating as a dissolution plume from pools of liquid carbon dioxide released on the seabed during four abyssal CO2-release experiments. Microbial abundance in deep-sea sediments was unchanged in one experiment, but increased under environmental hypercapnia during another, where the microbial assemblage may have benefited indirectly from the negative impact of low-pH conditions on other taxa. Lower abyssal metazoans exhibited low survival rates near CO2 pools. No urchins or holothurians survived during 30-42 days of exposure to episodic, but severe environmental hypercapnia during one experiment (E1; pH reduced by as much as ca. 1.4 units). These large pH reductions also caused 75% mortality for the deep-sea amphipod, Haploops lodo, near CO2 pools. Survival under smaller pH reductions (ΔpH<0.4 units) in other experiments (E2, E3, E5) was higher for all taxa, including echinoderms. Gastropods, cephalopods, and fish were more tolerant than most other taxa. The gastropod Retimohnia sp. and octopus Benthoctopus sp. survived exposure to pH reductions that episodically reached -0.3 pH units. Ninety percent of abyssal zoarcids (Pachycara bulbiceps) survived exposure to pH changes reaching ca. -0.3 pH units during 30-42 day-long experiments.

  1. Wide field polarimetry around the Perseus cluster at 350 MHz

    NASA Astrophysics Data System (ADS)

    Brentjens, M. A.

    2011-02-01

    Aims: This paper investigates the fascinating diffuse polarization structures at 350 MHz that have previously been tentatively attributed to the Perseus cluster and, more specifically, tries to find out whether the structures are located at (or near) the Perseus cluster, or in the Milky Way. Methods: A wide field, eight point Westerbork Synthesis Radio Telescope mosaic of the area around the Perseus cluster was observed in full polarization. The frequency range was 324 to 378 MHz and the resolution of the polarization maps was 2' × 3'. The maps were processed using Faraday rotation measure synthesis to counter bandwidth depolarization. The RM-cube covers Faraday depths of -384 to +381 rad m-2 in steps of 3 rad m-2. Results: There is emission all over the field at Faraday depths between -50 and +100 rad m-2. All previously observed structures were detected. However, no compelling evidence was found supporting association of those structures with either the Perseus cluster or large scale structure formation gas flows in the Perseus-Pisces super cluster. On the contrary, one of the structures is clearly associated with a Galactic depolarization canal at 1.41 GHz. Another large structure in polarized intensity, as well as Faraday depth at a Faraday depth of +30 rad m-2, coincides with a dark object in WHAM Hα maps at a kinematic distance of 0.5 ± 0.5 kpc. All diffuse polarized emission at 350 MHz towards the Perseus cluster is most likely located within 1 kpc from the Sun. The layers that emit the polarized radiation are less than 40 pc/|B_∥| thick. Appendix is only available in electronic form at http://www.aanda.org

  2. The ISRU Field Tests 2010 and 2012 at Mauna Kea, Hawaii: Results from the Miniaturised Mossbauer Spectrometers Mimos II and Mimos IIA

    NASA Technical Reports Server (NTRS)

    Klingelhoefer, G.; Morris, R. V.; Blumers, M; Bernhardt, B.; Graff, T.

    2014-01-01

    The 2010 and 2012 In-Situ Resource Utilization Analogue Test (ISRU) [1] on the Mauna Kea volcano in Hawai'i was coordinated by the Northern Centre for Advanced Technology (NORCAT) in collaboration with the Canadian Space Agency (CSA), the German Aerospace Center (DLR), and the National Aeronautics and Space Administration (NASA), through the PISCES program. Several instruments were tested as reference candidates for future analogue testing at the new field test site at the Mauna Kea volcano in Hawai'i. The fine-grained, volcanic nature of the material is a suitable lunar and martian analogue, and can be used to test excavation, site preparation, and resource utilization techniques. The 2010 location Pu'u Hiwahine, a cinder cone located below the summit of Mauna Kea (19deg45'39.29" N, 155deg28'14.56" W) at an elevation of 2800 m, provides a large number of slopes, rock avalanches, etc. to perform mobility tests, site preparation or resource prospecting. Besides hardware testing of technologies and systems related to resource identification, also in situ science measurements played a significant role in integration of ISRU and science instruments. For the advanced Mössbauer instrument MIMOS IIA, the new detector technologies and electronic components increase sensitivity and performance significantly. In combination with the high energy resolution of the SDD it is possible to perform Xray fluorescence analysis simultaneously to Mössbauer spectroscopy. In addition to the Fe-mineralogy, information on the sample's elemental composition will be gathered. The 2010 and 2012 field campaigns demonstrated that in-situ Mössbauer spectroscopy is an effective tool for both science and feedstock exploration and process monitoring. Engineering tests showed that a compact nickel metal hydride battery provided sufficient power for over 12 hr of continuous operation for the MIMOS instruments.

  3. Properties of an H I-selected galaxy sample

    NASA Technical Reports Server (NTRS)

    Szomoru, Arpad; Guhathakurta, Puragra; Van Gorkom, Jacqueline H.; Knapen, Johan H.; Weinberg, David H.; Fruchter, Andrew S.

    1994-01-01

    We analyze the properties of a sample of galaxies identified in a 21cm, H I-line survey of selected areas in the Perseus-Pisces supercluster and its foreground void. Twelve fields were observed in the supercluster, five of them (target fields) centered on optically bright galaxies, and the other seven (blank fields) selected to contain no bright galaxies within 45 min. of their centers. We detected nine previously uncatalogued, gas-rich galaxies, six of them in the target fields. We also detected H I from seven previously catalogued galaxies in these fields. Observations in the void covered the same volume as the 12 supercluster fields at the same H I-mass sensitivity, but no objects were detected. Combining out H I data with optical broadband and H alpha imaging, we conclude that the properties of H I-selected galaxies do not differ substantially from those of late-type galaxies found in optical surveys. In particular, the galaxies in our sample do not appear to be unusually faint for their H I mass, or for their circular velocity. We find tentative evidence for a connection between optical surface brightness and degree of isolation, in the sense that low surface brightness galaxies tend to be more isolated. The previously catalogued, optically bright galaxies in our survey volume dominate the total H I mass density and cross section; the uncatalogued galaxies contribute only approximately 19 percent of the mass and approximately 12 percent of the cross section. Thus, existing estimates of the density and cross section of neutral hydrogen, most of which are based on optically selected galaxy samples, are probably accurate. Such estimates can be used to compare the nearby universe to the high-redshift universe probed by quasar absorption lines.

  4. The PAndAS Field of Streams: Stellar Structures in the Milky Way Halo toward Andromeda and Triangulum

    NASA Astrophysics Data System (ADS)

    Martin, Nicolas F.; Ibata, Rodrigo A.; Rich, R. Michael; Collins, Michelle L. M.; Fardal, Mark A.; Irwin, Michael J.; Lewis, Geraint F.; McConnachie, Alan W.; Babul, Arif; Bate, Nicholas F.; Chapman, Scott C.; Conn, Anthony R.; Crnojević, Denija; Ferguson, Annette M. N.; Mackey, A. Dougal; Navarro, Julio F.; Peñarrubia, Jorge; Tanvir, Nial T.; Valls-Gabaud, David

    2014-05-01

    We reveal the highly structured nature of the Milky Way (MW) stellar halo within the footprint of the Pan-Andromeda Archaeological Survey (PAndAS) photometric survey from blue main sequence (MS) and MS turn-off stars. We map no fewer than five stellar structures within a heliocentric range of ~5-30 kpc. Some of these are known (the Monoceros Ring, the Pisces/Triangulum globular cluster stream), but we also uncover three well-defined stellar structures that could be, at least partly, responsible for the so-called Triangulum/Andromeda and Triangulum/Andromeda 2 features. In particular, we trace a new faint stellar stream located at a heliocentric distance of ~17 kpc. With a surface brightness of Σ V ~ 32-32.5 mag arcsec-2, it follows an orbit that is almost parallel to the Galactic plane north of M31 and has so far eluded surveys of the MW halo as these tend to steer away from regions dominated by the Galactic disk. Investigating our follow-up spectroscopic observations of PAndAS, we serendipitously uncover a radial velocity signature from stars that have colors and magnitudes compatible with the stream. From the velocity of eight likely member stars, we show that this stellar structure is dynamically cold, with an unresolved velocity dispersion that is lower than 7.1 km s-1 at the 90% confidence level. Along with the width of the stream (300-650 pc), its dynamics point to a dwarf-galaxy-accretion origin. The numerous stellar structures we can map in the MW stellar halo between 5 and 30 kpc and their varying morphology is a testament to the complex nature of the stellar halo at these intermediate distances.

  5. Spinal cord stimulation (SCS) in conjunction with peripheral nerve field stimulation (PNfS) for the treatment of complex pain in failed back surgery syndrome (FBSS).

    PubMed

    Reverberi, Claudio; Dario, Alessandro; Barolat, Giancarlo

    2013-01-01

    Failed back surgery syndrome (FBSS) is a well-defined pathologic condition observed over many years. We have investigated the effect of spinal cord stimulation (SCS) with peripheral nerve field stimulation (PNfS) in eight patients with FBSS. The following parameters were collected and analyzed: The pain intensity score on a 0-10 numbering rating scale (NRS), the psychologic profile with Beck Depression Inventory (BDI), the pain quality with McGill Pain Questionnaire-short form (MGPQ-sf), the back pain with Oswestry scale score (OS), and the health general quality pattern with QualityMetric's SF-36v2(®) Health Survey. Eight patients with low back and radicular pain in FBSS are reported. The mean duration of pain was 6.7 months, and the mean NRS score was 9.5, BDI 28.8, MGPQ-sf 16.8, OS 44.5, and SF-36 score was 72.8. The average drug intake of opioids was 250 mg/day. In six patients, two octopolar leads were placed in epidural space at D7-D8 and D8-D9, in conjunction with two octopolar leads placed in lumbar-sacral subcutaneous space (Precision System, Boston Scientific, Valencia, CA, USA), and in two patients, a two tetrapolar leads was placed in epidural space at D8-D9 with two tetrapolar leads (Pisces Quad, Plus, Medtronic Inc., Minneapolis, MN, USA) placed in lumbar-sacral subcutaneous space (Restore Ultra, Medtronic Inc., Minneapolis, MN, USA). After one year mean of follow-up, the mean NRS score was 4, BDI 8, MGPQ-sf 5, OS 21, and the SF-36 score was increased at 108.5. The mean drug intake of opioids was decreased at 20 mg/day. The combination of SCS and PNfS, using the latest rechargeable systems, may be a valid therapeutic strategy in FBSS. © 2012 International Neuromodulation Society.

  6. Panoramic Views of Cluster Evolution Since z = 3

    NASA Astrophysics Data System (ADS)

    Kodama, Tadayuki; Tanaka, M.; Tanaka, Ichi; Kajisawa, M.

    2007-05-01

    We have been conducting PISCES project (Panoramic Imaging and Spectroscopy of Cluster Evolution with Subaru) with making use of the wide-field imaging capability of Subaru. Our motivations are first to map out large scale structure and local environment of galaxies therein, and then to investigate the variation in galaxy properties as a function of environment and mass. We have completed multi-colour imaging of 8 distant clusters between 0.42) by wide-field near-infrared imaging of proto-clusters around radio loud galaxies, some of which are known to show a large number of Lya/Ha emitters at the same redshift of the radio galaxies. We have seen clear excess of near-infrared selected galaxies (including DRG) around many of the radio galaxies, suggesting that these are indeed likely to be proto-clusters with not only young emitters but also evolved populations. Spatial distribution of such NIR selected galaxies is filamentary and track similar structures traced by the emitters, but showing little individual overlap. The above two wide-field studies of dense environments and their surroundings will tell us galaxy evolution during the course of cluster assembly over more than 80 per cent of the age of the Universe.

  7. Morphological abnormalities during early-life development of the estuarine mummichog, Fundulus heteroclitus, as an indicator of androgenic and anti-androgenic endocrine disruption.

    PubMed

    Boudreau, Monica; Courtenay, Simon C; Maclatchy, Deborah L; Bérubé, Céline H; Hewitt, L Mark; Van Der Kraak, Glen J

    2005-03-04

    We tested the hypothesis that gross morphological abnormalities are a sensitive indicator of exposure to waterborne androgenic and anti-androgenic compounds during embryonic, larval and juvenile stages of development in the common estuarine killifish, the mummichog (Fundulus heteroclitus; Pisces: Cyprinodontidae). Static exposures with daily renewal were carried out with 10-100,000 ng/L of the androgen agonist, 17alpha-methyltestosterone (MT), or the androgen antagonist, cyproterone acetate (CA), for 60 days post-fertilization (PF) in duplicate exposures. Measured concentrations were 78.4-155.8% of nominal concentrations for MT and 13.5-168.1% for CA. No dose-related or consistent effects of MT or CA were observed before hatch. In 60 days PF juveniles, incidence of skeletal abnormalities (scoliosis, lordosis, head, facial and fin), soft tissue abnormality (anal swelling) and hemorrhaging were significantly increased by MT but only at high concentrations (> or =1000 ng/L). The 10,000 and 100,000 ng/L concentrations of MT produced a wider range of abnormalities than 1000ng/L. Over 90% of fish exposed to 10,000 or 100,000 ng/L were abnormal with an average of over 3.5 abnormalities per fish. CA did not increase the incidence of any type of abnormality. Survival of juveniles to the end of the exposure was reduced by MT at concentrations of 1000 ng/L and greater in the first experiment and at concentrations of 10,000 ng/L and greater in the second experiment. Juvenile length was reduced by high concentrations of MT (> or =10,000 ng/L) in the first experiment and by most concentrations in the second experiment. We conclude that morphological abnormalities in early-life stages of mummichogs are not a sensitive indicator of exposure to androgenic or anti-androgenic waterborne EDSs at environmentally relevant concentrations.

  8. Radiocarbon Based Ages and Growth Rates: Hawaiian Deep Sea Corals

    DOE Office of Scientific and Technical Information (OSTI.GOV)

    Roark, E B; Guilderson, T P; Dunbar, R B

    2006-01-13

    The radial growth rates and ages of three different groups of Hawaiian deep-sea 'corals' were determined using radiocarbon measurements. Specimens of Corallium secundum, Gerardia sp., and Leiopathes glaberrima, were collected from 450 {+-} 40 m at the Makapuu deep-sea coral bed using a submersible (PISCES V). Specimens of Antipathes dichotoma were collected at 50 m off Lahaina, Maui. The primary source of carbon to the calcitic C. secundum skeleton is in situ dissolved inorganic carbon (DIC). Using bomb {sup 14}C time markers we calculate radial growth rates of {approx} 170 {micro}m y{sup -1} and ages of 68-75 years on specimensmore » as tall as 28 cm of C. secundum. Gerardia sp., A. dichotoma, and L. glaberrima have proteinaceous skeletons and labile particulate organic carbon (POC) is their primary source of architectural carbon. Using {sup 14}C we calculate a radial growth rate of 15 {micro}m y{sup -1} and an age of 807 {+-} 30 years for a live collected Gerardia sp., showing that these organisms are extremely long lived. Inner and outer {sup 14}C measurements on four sub-fossil Gerardia spp. samples produce similar growth rate estimates (range 14-45 {micro}m y{sup -1}) and ages (range 450-2742 years) as observed for the live collected sample. Similarly, with a growth rate of < 10 {micro}m y{sup -1} and an age of {approx}2377 years, L. glaberrima at the Makapuu coral bed, is also extremely long lived. In contrast, the shallow-collected A. dichotoma samples yield growth rates ranging from 130 to 1,140 {micro}m y{sup -1}. These results show that Hawaiian deep-sea corals grow more slowly and are older than previously thought.« less

  9. Evaluating the effect of oceanic striations on biogeochemistry in the eastern South Pacific

    NASA Astrophysics Data System (ADS)

    Auger, P. A.; Belmadani, A.; Donoso, D.; Hormazabal, S.

    2017-12-01

    In recent years, quasi-zonal mesoscale jet-like features or striations have been ubiquitously detected in the time-mean circulation of the world ocean using satellite altimetry and in situ data. Most likely the result of some organization of the mesoscale eddy field such as preferred eddy tracks, these striations may be able to advect and mix physical properties. Yet, their impact on biogeochemistry has not been assessed yet. Off central Chile, the interaction between striations and sharp background gradients of biogeochemical properties may spatially structure biogeochemistry, with potential implications for marine ecosystems. For instance, striations may affect the mean horizontal distribution of surface phytoplankton biomass in the coastal transition zone (CTZ), or the structure and variability of the oxygen-minimum zone (OMZ). Here, we evaluate the expression of striations in satellite records of ocean color and in a set of numerically simulated biogeochemical tracers off central Chile (chlorophyll, carbon, primary production, oxygen, nutrients), averaged over the surface productive layer, the OMZ at intermediate depths or the water column. A multi-decadal hindcast simulation of the physical-biogeochemical dynamics was run over the period 1984-2013 using the ROMS-PISCES (for Regional Oceanic Modeling System - Pelagic Interactions Scheme for Carbon and Ecosystem Studies) platform at an eddy-resolving resolution. Satellite data and model outputs are spatially high-pass filtered to remove the large-scale signal and evaluate the match between striations and biogeochemical tracer anomalies in the model and observations. The effect of striations on the mean shape of the zonal gradient of phytoplankton biomass in the CTZ between eutrophic coastal waters and oligotrophic offshore waters is then deduced. The fraction of tracer anomalies due to striations is quantified, and the structuring roles of stationary and transient striations are respectively explored by matching

  10. Hubble Sees Galaxy Hiding in the Night Sky

    NASA Image and Video Library

    2017-12-08

    This striking NASA/ESA Hubble Space Telescope image captures the galaxy UGC 477, located just over 110 million light-years away in the constellation of Pisces (The Fish). UGC 477 is a low surface brightness (LSB) galaxy. First proposed in 1976 by Mike Disney, the existence of LSB galaxies was confirmed only in 1986 with the discovery of Malin 1. LSB galaxies like UGC 477 are more diffusely distributed than galaxies such as Andromeda and the Milky Way. With surface brightnesses up to 250 times fainter than the night sky, these galaxies can be incredibly difficult to detect. Most of the matter present in LSB galaxies is in the form of hydrogen gas, rather than stars. Unlike the bulges of normal spiral galaxies, the centers of LSB galaxies do not contain large numbers of stars. Astronomers suspect that this is because LSB galaxies are mainly found in regions devoid of other galaxies, and have therefore experienced fewer galactic interactions and mergers capable of triggering high rates of star formation. LSB galaxies such as UGC 477 instead appear to be dominated by dark matter, making them excellent objects to study to further our understanding of this elusive substance. However, due to an underrepresentation in galactic surveys — caused by their characteristic low brightness — their importance has only been realized relatively recently. Image credit: ESA/Hubble & NASA, Acknowledgement: Judy Schmidt NASA image use policy. NASA Goddard Space Flight Center enables NASA’s mission through four scientific endeavors: Earth Science, Heliophysics, Solar System Exploration, and Astrophysics. Goddard plays a leading role in NASA’s accomplishments by contributing compelling scientific knowledge to advance the Agency’s mission. Follow us on Twitter Like us on Facebook Find us on Instagram

  11. The PAndAS field of streams: Stellar structures in the milky way halo toward Andromeda and Triangulum

    DOE Office of Scientific and Technical Information (OSTI.GOV)

    Martin, Nicolas F.; Ibata, Rodrigo A.; Rich, R. Michael

    We reveal the highly structured nature of the Milky Way (MW) stellar halo within the footprint of the Pan-Andromeda Archaeological Survey (PAndAS) photometric survey from blue main sequence (MS) and MS turn-off stars. We map no fewer than five stellar structures within a heliocentric range of ∼5-30 kpc. Some of these are known (the Monoceros Ring, the Pisces/Triangulum globular cluster stream), but we also uncover three well-defined stellar structures that could be, at least partly, responsible for the so-called Triangulum/Andromeda and Triangulum/Andromeda 2 features. In particular, we trace a new faint stellar stream located at a heliocentric distance of ∼17more » kpc. With a surface brightness of Σ {sub V} ∼ 32-32.5 mag arcsec{sup –2}, it follows an orbit that is almost parallel to the Galactic plane north of M31 and has so far eluded surveys of the MW halo as these tend to steer away from regions dominated by the Galactic disk. Investigating our follow-up spectroscopic observations of PAndAS, we serendipitously uncover a radial velocity signature from stars that have colors and magnitudes compatible with the stream. From the velocity of eight likely member stars, we show that this stellar structure is dynamically cold, with an unresolved velocity dispersion that is lower than 7.1 km s{sup –1} at the 90% confidence level. Along with the width of the stream (300-650 pc), its dynamics point to a dwarf-galaxy-accretion origin. The numerous stellar structures we can map in the MW stellar halo between 5 and 30 kpc and their varying morphology is a testament to the complex nature of the stellar halo at these intermediate distances.« less

  12. Density of Trematocranus placodon (Pisces: Cichlidae): a predictor of density of the schistosome intermediate host, Bulinus nyassanus (Gastropoda: Planorbidae), in Lake Malaŵi.

    PubMed

    Madsen, Henry; Stauffer, Jay R

    2011-06-01

    From the mid-1980s, we recorded a significant increase in urinary schistosomiasis infection rate and transmission among inhabitants of lakeshore communities in the southern part of Lake Malaŵi, particularly on Nankumba peninsula in Mangochi District. We suggested that the increase was due to over-fishing, which reduced the density of snail-eating fishes, thereby allowing schistosome intermediate host snails to increase to higher densities. In this article, we collected data to test this hypothesis. The density of both Bulinus nyassanus, the intermediate host of Schistosoma haematobium, and Melanoides spp. was negatively related to density of Trematocranus placodon, the most common of the snail-eating fishes in the shallow water of Lake Malaŵi. Both these snails are consumed by T. placodon. Transmission of S. haematobium through B. nyassanus only occurs in the southern part of the lake and only at villages where high density of the intermediate host is found relatively close to the shore. Thus, we believe that implementation of an effective fish ban up to 100-m offshore along these specific shorelines in front of villages would allow populations of T. placodon to increase in density and this would lead to reduced density of B. nyassanus and possibly schistosome transmission. To reduce dependence on natural fish populations in the lake and still maintain a source of high quality food, culture of indigenous fishes may be a viable alternative.

  13. Steelhead Kelt Reconditioning and Reproductive Success, 2008 Annul Report.

    DOE Office of Scientific and Technical Information (OSTI.GOV)

    Hatch, Douglas R.

    Iteroparity, the ability to repeat spawn, is a natural life history strategy that is expressed by some species from the family Salmonidae. Current rates of observed steelhead Oncorhynchus mykiss iteroparity rates in the Columbia River Basin are severely depressed due to anthropogenic development which includes operation of the hydropower system and other habitat degradations. Artificial reconditioning, which is the process of culturing post-spawned fish (kelts) in a captive environment until they are able to reinitiate feeding, growth, and redevelop mature gonads, is evaluated in this study as method to restore depressed steelhead populations. To test the efficacy of steelhead keltmore » reconditioning as a management and recovery tool different scenarios were investigated ranging from very low intensity (collect and transport fish) to high intensity (collect and feed fish in captivity until rematuration). Examinations of gamete and progeny viability were performed for first-time spawners and reconditioned kelt steelhead. We have continued to examine reproductive success of reconditioned kelt steelhead in Omak Creek using microsatellite loci to perform parentage analysis on juvenile O. mykiss . The groundwork has also begun on developing a genetic analysis of the Yakima subbasin in order to determine steelhead kelt contribution by utilizing parentage analysis on a larger scale. A research and study plan has been developed cooperatively with the University of Idaho to determine the feasibility of steelhead kelt reconditioning program in the Snake River Basin. Analysis of management scenarios indicated that while no-term and short-term reconditioned kelts continue to perform well outmigrating to the ocean but returns from these groups have been low ranging from 0-12% during 2002-2008. Survival (56%) of fish in the long-term treatment in 2008 was the highest we have observed in this project. Analyzing the three different management scenarios within the Yakima River

  14. New species of Plagioporus Stafford, 1904 (Digenea: Opecoelidae) from California, with an amendment of the genus and a phylogeny of freshwater plagioporines of the Holarctic.

    PubMed

    Fayton, Thomas J; Andres, Michael J

    2016-10-01

    Plagioporus hageli n. sp. is described from the intestine of Oncorhynchus mykiss (Walbaum) collected from the River Yuba, California, USA. Of the accepted, nominal species of Plagioporus Stafford, 1904 from the Nearctic, the new species is morphologically similar to three intestinal species from the western USA parasitising diadromous fishes, including Plagioporus shawi (McIntosh, 1939), Plagioporus kolipinskii Tracey, Choudhury, Cheng & Ghosh, 2009 and Plagioporus siliculus Sinitsin, 1931, and is also similar to Plagioporus serotinus Stafford, 1904 from catostomids from eastern Canada. Plagioporus hageli n. sp. is distinguished from the former three species in lacking a dorsal vitelline field and from the latter species in having a consistent interruption in the distribution of the vitellarium at the level of the ventral sucker. The new species is also morphologically similar to an unnamed species of Plagioporus and a species misidentified as 'Plagioporus angusticolle' that were collected from California, but it is easily distinguished from both in its shorter body length. To estimate the placement of the new species within Plagioporus and within the Opecoelidae Ozaki, 1925, we conducted a Bayesian inference (BI) analysis of partial 28S rDNA sequence data that included sequences from Plagioporus hageli n. sp., five other species of Plagioporus, three species of Neoplagioporus Shimazu, 1990, including the type-species, Neoplagioporus zacconis (Yamaguti, 1934), two species of Urorchis Ozaki, 1927 (including the type-species, Urorchis goro Ozaki, 1927) and sequences of 42 opecoelid species obtained from GenBank. Our phylogenetic analysis revealed (i) plagioporines parasitising freshwater hosts form a monophyletic group; (ii) Plagiocirrus loboides Curran, Overstreet & Tkach, 2007 nested within the rest of the members of Plagioporus; (iii) the new species was closer to Plagiocirrus loboides than to Plagioporus shawi, the other salmonid parasite included in our analysis

  15. Life history, population dynamics and production of eastern mosquitofish, Gambusia holbrooki (Pisces, Poeciliidae), in rice fields of the lower Mondego River Valley, western Portugal

    NASA Astrophysics Data System (ADS)

    Cabral, João Alexandre; Marques, João Carlos

    1999-11-01

    The introduced population of Gambusia holbrooki from the rice fields of the lower Mondego River Valley, Portugal, was studied for 15 months, relating their life cycle and population dynamics with its production, in order to assess the role of the species in the energy flow and secondary production in this type of agro-ecosystem. Two main annual cohorts (1995 and 1996 cohorts) were identified. The females outnumbered males and the average female/male-ratio was 4. The inspection of ovary developmental stages of this viviparous fish, revealed that the most important reproductive period was between April and August. The first recruits were recorded in June and were present thereafter until October. Males from the parental cohort died before August, whereas parental females could survive until October. Mean adjusted fecundity (number of embryos divided by female standard length) peaked in July 1996 (0.95) and in June 1997 (1.05). Females reached greater sizes, had a higher growth rate and lived longer than males. Annual production was estimated at 3.101 g.m -2.year -1 (ash-free dry weight, AFDW), the average biomass at 2.896 g.m -2 (AFDW), and the P/B ratio was 1.071. A conjugation of life history, population dynamics, production and ecological traits (e.g. fast growth, reduced longevity, viviparity, high productivity, an intermediate position in food chain, and no special habitat requirements for reproduction) clearly show that the populations of G. holbrooki, introduced into rice fields all over the world, may play an important role in the structure and functioning of the biological communities of these important agro-ecosystems.

  16. The total body length and body weight examination among gabus Sentani fish population, Oxyeleotris heterodon, Weber 1907 (Pisces: Eleotridae) of Sentani lake, Papua, Indonesia

    NASA Astrophysics Data System (ADS)

    Sriyani, E. D.; Abinawanto, Bowolaksono, A.

    2017-07-01

    The gabus Sentani fish lived in the Sentani Lake, Papua, since million years ago. Nowadays, the population of those species is getting extinct because of the overexploitation, whereas the culture effort of this species has not been developed, yet. The purpose of the study was to examine the total body length and body weight collected from some villages surrounding Sentani Lake such as Ifar village, Sosiri village, and Putali village. The body weight average of gabus fish from Ifar village, Sosiri village, and Putali village were 373.53 g, 426.86 g, and 118.34 g respectively. While the total body length average of gabus Sentani fish from Ifar village, Sosiri village, and Putali village were 279.30 mm, 223.30 mm and 222.06 mm, respectively. The growth model was W = 0.021067L3.086 with R2 value was 35.8 %, and r value was 0.598. Gabus Sentani fish, Oxyeleotris heterodon (Weber 1907) exhibited positive allometric (b > 3).

  17. Interannual variability of primary production and air-sea CO2 flux in the Atlantic and Indian sectors of the Southern Ocean.

    NASA Astrophysics Data System (ADS)

    Dufour, Carolina; Merlivat, Liliane; Le Sommer, Julien; Boutin, Jacqueline; Antoine, David

    2013-04-01

    As one of the major oceanic sinks of anthropogenic CO2, the Southern Ocean plays a critical role in the climate system. However, due to the scarcity of observations, little is known about physical and biological processes that control air-sea CO2 fluxes and how these processes might respond to climate change. It is well established that primary production is one of the major drivers of air-sea CO2 fluxes, consuming surface Dissolved Inorganic Carbon (DIC) during Summer. Southern Ocean primary production is though constrained by several limiting factors such as iron and light availability, which are both sensitive to mixed layer depth. Mixed layer depth is known to be affected by current changes in wind stress or freshwater fluxes over the Southern Ocean. But we still don't know how primary production may respond to anomalous mixed layer depth neither how physical processes may balance this response to set the seasonal cycle of air-sea CO2 fluxes. In this study, we investigate the impact of anomalous mixed layer depth on surface DIC in the Atlantic and Indian sectors of the Subantarctic zone of the Southern Ocean (60W-60E, 38S-55S) with a combination of in situ data, satellite data and model experiment. We use both a regional eddy permitting ocean biogeochemical model simulation based on NEMO-PISCES and data-based reconstruction of biogeochemical fields based on CARIOCA buoys and SeaWiFS data. A decomposition of the physical and biological processes driving the seasonal variability of surface DIC is performed with both the model data and observations. A good agreement is found between the model and the data for the amplitude of biological and air-sea flux contributions. The model data are further used to investigate the impact of winter and summer anomalies in mixed layer depth on surface DIC over the period 1990-2004. The relative changes of each physical and biological process contribution are quantified and discussed.

  18. Scientific Studies in Support of Shutting In the Macondo Well (Deepwater Horizon) Blowout, Gulf of Mexico (Invited)

    NASA Astrophysics Data System (ADS)

    Hickman, S.; Mooney, W. D.; Hsieh, P. A.; Enomoto, C.; Nelson, P. H.; McNutt, M.

    2010-12-01

    Scientists, engineers and managers from BP, other private companies, universities, government research labs and a broad spectrum of federal agencies have formed a unique cooperative working relationship in responding to the Macondo oil well (Deepwater Horizon) blowout. Among the many activities performed during this effort, U.S. Geological Survey personnel evaluated the potential geologic hazard of shutting in the Macondo well at the sea floor, and collectively decided, with others, the conditions under which it could be safely undertaken. These hazards included the possible loss of wellbore integrity under the anticipated high shut-in pressures, potentially leading to new pathways for hydrocarbon release to the Gulf of Mexico through upward hydraulic fracture propagation and/or soft sediment erosion initiating at possible leak points in the cemented casing. This hazard evaluation required analysis of 2D and 3D seismic surveys, seafloor bathymetry, pressure transient tests, geophysical well logs, in-situ stress (“leak-off”) tests and drilling data (e.g., mud logs) to assess the geological, hydrological and geomechanical conditions at and around the Macondo well. After the well was successfully capped and shut in by BP on July 15, a variety of monitoring practices were put into place to guard against further leaks into the Gulf. These monitoring activities included acquisition of wellhead pressure data, marine multi-channel seismic profiles, sea-floor and sea-surface sonar surveys (the latter using the NOAA RV/Pisces), and wellhead visual/acoustic monitoring. Scientists and engineers from BP, outside consultants, government agencies and the university community then worked together to continuously evaluate these data to ensure that the well remained safely shut in until reservoir pressures were suppressed (“killed”) with heavy drilling mud and the well was sealed with cement. This effort to shut in and then permanently seal the blown-out Macondo well has

  19. Apertif: A new phased-array feed for WSRT

    NASA Astrophysics Data System (ADS)

    Adams, Elizabeth; Adebahr, Björn; de Blok, Willem J. G.; Hess, Kelley M.; Lucero, Danielle M.; Maccagni, Filippo; Morganti, Raffaella; Oosterloo, Tom A.; Ponomareva, Anastasia; Staveley-Smith, Lister; van der Hulst, J. M.; Verheijen, Marc A. W.; Verstappen, Joris

    2018-01-01

    Apertif is a phased-array feed for the Westerbork Synthesis Radio Telescope (WSRT), increasing the field of view of the telescope by a factor of twenty-five to 6.8 square degrees. In 2018, three legacy surveys will commence: a shallow imaging survey, a medium-deep imaging survey, and a pulsars and fast transients survey. The imaging surveys will be done in full polarization over the frequency range 1130-1430 MHz, which corresponds to redshifts of z=0-0.256 for neutral hydrogen (HI). The spectral resolution is 12.2 kHz, or an HI velocity resolution of 2.6 km/s at z=0 and 3.2 km/s at z=0.256. The full resolution images will have a beam size of 15"x15"/sin(declination), and tapered data products (i.e., 30" resolution images) will also be available. The footprints of the imaging surveys are chosen to maximize coverage of multi-wavelength datasets, including the Herschel Atlas North Galactic Pole field, HetDex region, plus coordination with MaNGA and planned WEAVE follow-up. The survey footprints were also chosen to probe different regions of interest, including the CVn region, Coma cluster, and Perseus-Pisces supercluster. The key science cases for the imaging surveys include understanding how galaxy properties depend on environment, the role of interactions and gas accretion and removal, understanding the smallest gas-rich galaxies, connecting cold gas to AGN, understanding the history of star formation and AGN activity in the faint radio continuum population, and studying magnetic fields in galaxies and large-scale structure. After a proprietary period, the survey data products will be publicly available through the Apertif Long Term Archive (ALTA). Up-to-date information on Apertif and the planned surveys can be found at www.apertif.nl.Commissioning of the Apertif instrument is underway. Here we will present results from the imaging commissioning, highlighting the capabilities of the instrument as related to the key science cases of the imaging surveys.

  20. Coarsening of physics for biogeochemical model in NEMO

    NASA Astrophysics Data System (ADS)

    Bricaud, Clement; Le Sommer, Julien; Madec, Gurvan; Deshayes, Julie; Chanut, Jerome; Perruche, Coralie

    2017-04-01

    Ocean mesoscale and submesoscale turbulence contribute to ocean tracer transport and to shaping ocean biogeochemical tracers distribution. Representing adequately tracer transport in ocean models therefore requires to increase model resolution so that the impact of ocean turbulence is adequately accounted for. But due to supercomputers power and storage limitations, global biogeochemical models are not yet run routinely at eddying resolution. Still, because the "effective resolution" of eddying ocean models is much coarser than the physical model grid resolution, tracer transport can be reconstructed to a large extent by computing tracer transport and diffusion with a model grid resolution close to the effective resolution of the physical model. This observation has motivated the implementation of a new capability in NEMO ocean model (http://www.nemo-ocean.eu/) that allows to run the physical model and the tracer transport model at different grid resolutions. In a first time, we present results obtained with this new capability applied to a synthetic age tracer in a global eddying model configuration. In this model configuration, ocean dynamic is computed at ¼° resolution but tracer transport is computed at 3/4° resolution. The solution obtained is compared to 2 reference setup ,one at ¼° resolution for both physics and passive tracer models and one at 3/4° resolution for both physics and passive tracer model. We discuss possible options for defining the vertical diffusivity coefficient for the tracer transport model based on information from the high resolution grid. We describe the impact of this choice on the distribution and one the penetration of the age tracer. In a second time we present results obtained by coupling the physics with the biogeochemical model PISCES. We look at the impact of this methodology on some tracers distribution and dynamic. The method described here can found applications in ocean forecasting, such as the Copernicus Marine

  1. Morphology of brood pouch formation in the pot-bellied seahorse Hippocampus abdominalis.

    PubMed

    Kawaguchi, Mari; Okubo, Ryohei; Harada, Akari; Miyasaka, Kazuki; Takada, Kensuke; Hiroi, Junya; Yasumasu, Shigeki

    2017-01-01

    The reproductive strategies of vertebrates are diverse. Seahorses (Pisces: Syngnathidae) possess the unique characteristic of male pregnancy; i.e., males, not females, incubate embryos in a specialized structure called a 'brood pouch'. The brood pouch is formed along the ventral midline of the tail. The lumen of the brood pouch is surrounded by loose connective tissue, called pseudoplacenta, and dermis. We visualized and evaluated the morphology of brood pouch formation in Hippocampus abdominalis to gain generalizable insights into this process in seahorses. First, we employed several staining methods to characterize the pseudoplacenta and dermis of the brood pouch of mature male seahorses. The pseudoplacenta is composed mainly of reticular fibers, while the dermis is composed mainly of collagenous fibers. Further observations showed that pouch formation is initiated by linear projections of epithelia on both ventrolateral sides of the body. These projections elongated toward the ventral midline, eventually fused together, and then formed a baggy structure composed of a single dermis layer with neither smooth muscle nor pseudoplacenta. Finally, the pseudoplacenta was formed, together with two layers of dermis and smooth muscle. Thus, a fully developed brood pouch was established. The morphology of the luminal epithelium also changed during pouch formation. We analyzed the localization of C-type lectins as markers; haCTL II was localized in both the outer and luminal epithelia of the brood pouch throughout development in the male seahorse, whereas haCTL IV, which was not detected in the early stage of seahorse development, became localized only in the luminal epithelium as development proceeded. We categorized the processes of brood pouch formation during male seahorse development into three stages: (1) the early stage, characterized by formation of a baggy structure from the primordium; (2) the middle stage, characterized by the differentiation and establishment of

  2. Enabling Technologies for Characterizing Exoplanet Systems with Exo-C

    NASA Astrophysics Data System (ADS)

    Cahoy, Kerri Lynn; Belikov, Ruslan; Stapelfeldt, Karl R.; Chakrabarti, Supriya; Trauger, John T.; Serabyn, Eugene; McElwain, Michael W.; Pong, Christopher M.; Brugarolas, Paul

    2015-01-01

    The Exoplanet Science and Technology Definition Team's Internal Coronagraph mission design, called 'Exo-C', utilizes several technologies that have advanced over the past decade with support from the Exoplanet Exploration Program. Following the flow of photons through the telescope, the science measurement is enabled by (i) a precision pointing system to keep the target exoplanet system precisely positioned on the detector during the integration time, (ii) high-performance coronagraphs to block the parent star's light so that the planet's reflected light can be detected, (iii) a wavefront control system to compensate for any wavefront errors such as those due to thermal or mechanical deformations in the optical path, especially errors with high spatial frequencies that could cause contrast-reducing speckles, and (iv) an integral field spectrograph (IFS) that provides moderate resolution spectra of the target exoplanets, permitting their characterization and comparison with models and other data sets. Technologies such as the wavefront control system and coronagraphs will also benefit from other funded efforts in progress, such as the Wide Field Infrared Survey Telescope Astrophysics Focused Telescope Assets (WFIRST-AFTA) program. Similarly, the Exo-C IFS will benefit from the Prototype Imaging Spectrograph for Coronagraphic Exoplanet Studies (PISCES) demonstration. We present specific examples for each of these technologies showing that the state of the art has advanced to levels that will meet the overall scientific, cost, and schedule requirements of the Exo-C mission. These capabilities have matured with testbed and/or ground-telescope demonstrations and have reached a technological readiness level (TRL) that supports their inclusion in the baseline design for potential flight at the end of this decade. While additional work remains to build and test flight-like components (that concurrently meet science as well as size, weight, power, and environmental

  3. Sedimentary particulate iron: the missing micronutrients ?

    NASA Astrophysics Data System (ADS)

    Beghoura, Houda; Gorgues, Thomas; Aumont, Olivier; Planquette, Hélène

    2017-04-01

    Iron is known to regulate the marine primary production and to impact the structure of ecosystems. Indeed, iron is the limiting nutrient for the phytoplankton growth over about 30% of the global ocean. However, the nature of the external sources of iron to the ocean and their quantification remain uncertain. Among these external sources, the sediment sources have been recently shown to be underestimated. Besides, since the operationally defined dissolved iron (which is the sum of truly dissolved and colloidal iron) was traditionally assumed to be the only form available to phytoplankton and bacteria, most studies have focused on the supply of dissolved iron to the ocean, the role of the particulate fraction of iron being largely ignored. This traditional view has been recently challenged, noticeably, by observational evidences. Indeed, in situ observations have shown that large amounts of particulate iron are being resuspended from continental margins to the open ocean thanks to fine grained particles' transport over long distances. A fraction of this particulate iron may dissolve and thereby fuel the phytoplankton growth. The magnitude of the sedimentary sources of particulate iron and the releasing processes affecting this iron phase are not yet well constrained or quantified. As a consequence, the role of sedimentary particulate iron in the biogeochemical cycles is still unclear despite its potentially major widespread importance. Here, we propose a modeling exercise to assess the first order impacts of this newly considered particulate sedimentary iron on global ocean biogeochemistry. We designed global experiments with a coupled dynamical-biogeochemical model (NEMO-PISCES). First, a control simulation that includes only a sediment source of iron in the dissolved phase has been run. Then, this control simulation is being compared with simulations, in which we include a sediment source of iron in both phases (dissolved as well as particulate). Those latter

  4. Temporary Restoration of Bull Trout Passage at Albeni Falls Dam, 2008 Progress Report.

    DOE Office of Scientific and Technical Information (OSTI.GOV)

    Bellgraph, Brian J.

    2009-03-31

    The goal of this project is to provide temporary upstream passage of bull trout around Albeni Falls Dam on the Pend Oreille River, Idaho. Our specific objectives are to capture fish downstream of Albeni Falls Dam, tag them with combination acoustic and radio transmitters, release them upstream of Albeni Falls Dam, and determine if genetic information on tagged fish can be used to accurately establish where fish are located during the spawning season. In 2007, radio receiving stations were installed at several locations throughout the Pend Oreille River watershed to detect movements of adult bull trout; however, no bull troutmore » were tagged during that year. In 2008, four bull trout were captured downstream of Albeni Falls Dam, implanted with transmitters, and released upstream of the dam at Priest River, Idaho. The most-likely natal tributaries of bull trout assigned using genetic analyses were Grouse Creek (N = 2); a tributary of the Pack River, Lightning Creek (N = 1); and Rattle Creek (N = 1), a tributary of Lightning Creek. All four bull trout migrated upstream from the release site in Priest River, Idaho, were detected at monitoring stations near Dover, Idaho, and were presumed to reside in Lake Pend Oreille from spring until fall 2008. The transmitter of one bull trout with a genetic assignment to Grouse Creek was found in Grouse Creek in October 2008; however, the fish was not found. The bull trout assigned to Rattle Creek was detected in the Clark Fork River downstream from Cabinet Gorge Dam (approximately 13 km from the mouth of Lightning Creek) in September but was not detected entering Lightning Creek. The remaining two bull trout were not detected in 2008 after detection at the Dover receiving stations. This report details the progress by work element in the 2008 statement of work, including data analyses of fish movements, and expands on the information reported in the quarterly Pisces status reports.« less

  5. Acanthocephalus amini n. sp. (Acanthocephala: Echinorhynchidae) from the freshwater fish Cichlasoma urophthalmus (Günther) (Cichlidae) in Mexico.

    PubMed

    Salgado-Maldonado, Guillermo; Novelo-Turcotte, María Teresa

    2009-07-01

    Acanthocephalus amini n. sp. (Palaeacanthocephala: Echinorhynchidae) is described from the intestine of Cichlasoma urophthalmus (Günther) (Pisces: Cichlidae) collected in the Río Champotón, a river in Campeche State, Mexico. It is the fourth species of Acanthocephalus Koelreuther, 1771 described from North American freshwater fishes, although two other species are known from South America. The new species is distinguished from other members of Acanthocephalus by features of its trunk, which is small, clavate, slightly expanded medially and bluntly pointed posteriorly. It is further distinguished by having a cylindrical proboscis armed with 13-14 longitudinal rows of 11-12 stout hooks; the apical and medial proboscis hooks are almost uniform in size and shape, decreasing in size towards the base; the posteriormost hooks are smaller, straighter and more slender than the anterior and middle hooks; and the lateral rows of hooks are more widely spaced, forming a conspicuous longitudinal area devoid of hooks. Furthermore, the lemnisci are saccate and shorter than the proboscis receptacle; and the neck is very short with a thick collar of trunk tegument, which encircles the base of proboscis. In males, the testes are in the middle third of trunk, diagonal, spherical and small relative to the body size, and there are six clavate cement glands. In females, the uterus forms a conspicuous, elongate, cylindrical egg reservoir. The new species is most similar to A. alabamensis Amin & Williams, 1983, but can be distinguished by its swollen, clavate trunk, the largest proboscis hooks being present apically and medially, smaller testes, a shorter male reproductive system relative to body size and females with a prominent uterus. They have different hosts and geographical distribution. The new species can be differentiated from Brasacanthus sphoeroides Thatcher, 2001, a similar species in a monotypic echinorhynchid genus, because the latter is larger, has smaller proboscis hooks

  6. Micronucleus test in fish from a pampasic pond (Argentina): an estimation of the presence of genotoxic compounds.

    PubMed

    Campana, M A; Panzeri, A M; Escalante, A H; Moreno, V J; Dulout, F N

    2001-01-01

    The Los Padres pond is one of the commonly shallow, polymictic lakes from the so-called depressed Pampa (Argentina). Its watershed includes one affluent, named Los Padres creek, which flows through horticultural lands wherein great amounts of pesticides are applied. Opposite to this stream, the pond drains into La Tapera creek that is the effluent running toward the sea. Many studies have confirmed the capacity of various pesticides to induce genetic damage. The use of micronucleus (MN) tests in fish has enabled us to detect the presence of contaminants in the lakewater and to evaluate theirgenotoxic effects. For this purpose, water samples were collected during April, August, and December 1999 from both creeks characterized by different environmental conditions. In the laboratory, specimens oftetras Cheirodon interruptus (Pisces, Characidae) were reared in water samples from the two creeks. Control fish were kept in drinking water. Fifteen individuals from each experimental group were sacrificed after 24-, 48-, and 72-hour exposure intervals. Micronucleus frequency in fish erythrocytes was determined, and the Kruskal-Wallis test for statistic analysis was used. We made the following observations: (1) Highly significant differences occurred in MN frequency between the control group and the samples from both creeks. (2) An increase in MN frequency was evident in specimens sampled from the affluent input during the month of December. These results allowed us to conclude that the increase in MN frequency observed in fish belonging to both sampling sites would indicate the existence of genotoxic compounds in the Los Padres pond. The high MN frequency in fish collected near Los Padres creek inlet might be related to the polluted load transported by the affluent and discharged into the lake's surface waters. Future work would allow us to develop efficient methods for predicting the presence of genotoxic contaminants. It would be possible then to propose strategies for

  7. Evaluate the Restoration Potential of Snake River Fall Chinook Salmon Spawning Habitat, Status Report 2006.

    DOE Office of Scientific and Technical Information (OSTI.GOV)

    Hanrahan, T.P.

    2009-01-08

    The Bonneville Power Administration (BPA) Project 2003-038-00, Evaluate the restoration potential of Snake River fall Chinook salmon spawning habitat, began in FY04 (15 December 2003) and continues into FY06. This status report is intended to summarize accomplishments during FY04 and FY05. Accomplishments are summarized by Work Elements, as detailed in the Statement of Work (see BPA's project management database PISCES). This project evaluates the restoration potential of mainstem habitats for fall Chinook salmon. The studies address two research questions: 'Are there sections not currently used by spawning fall Chinook salmon within the impounded lower Snake River that possess the physicalmore » characteristics for potentially suitable fall Chinook spawning habitat?' and 'Can hydrosystem operations affecting these sections be adjusted such that the sections closely resemble the physical characteristics of current fall Chinook salmon spawning areas in similar physical settings?' Efforts are focused at two study sites: (1) the Ice Harbor Dam tailrace downstream to the Columbia River confluence, and (2) the Lower Granite Dam tailrace. Our previous studies indicated that these two areas have the highest potential for restoring Snake River fall Chinook salmon spawning habitat. The study sites will be evaluated under existing structural configurations at the dams (i.e., without partial removal of a dam structure), and alternative operational scenarios (e.g., varying forebay/tailwater elevations). The areas studied represent tailwater habitat (i.e., riverine segments extending from a dam downstream to the backwater influence from the next dam downstream). We are using a reference site, indicative of current fall Chinook salmon spawning areas in tailwater habitat, against which to compare the physical characteristics of each study site. The reference site for tailwater habitats is the section extending downstream from the Wanapum Dam tailrace on the Columbia River

  8. Variable reactivity of particulate organic matter in a global ocean biogeochemical model

    NASA Astrophysics Data System (ADS)

    Aumont, Olivier; van Hulten, Marco; Roy-Barman, Matthieu; Dutay, Jean-Claude; Éthé, Christian; Gehlen, Marion

    2017-05-01

    The marine biological carbon pump is dominated by the vertical transfer of particulate organic carbon (POC) from the surface ocean to its interior. The efficiency of this transfer plays an important role in controlling the amount of atmospheric carbon that is sequestered in the ocean. Furthermore, the abundance and composition of POC is critical for the removal of numerous trace elements by scavenging, a number of which, such as iron, are essential for the growth of marine organisms, including phytoplankton. Observations and laboratory experiments have shown that POC is composed of numerous organic compounds that can have very different reactivities. However, this variable reactivity of POC has never been extensively considered, especially in modelling studies. Here, we introduced in the global ocean biogeochemical model NEMO-PISCES a description of the variable composition of POC based on the theoretical reactivity continuum model proposed by Boudreau and Ruddick (1991). Our model experiments show that accounting for a variable lability of POC increases POC concentrations in the ocean's interior by 1 to 2 orders of magnitude. This increase is mainly the consequence of a better preservation of small particles that sink slowly from the surface. Comparison with observations is significantly improved both in abundance and in size distribution. Furthermore, the amount of carbon that reaches the sediments is increased by more than a factor of 2, which is in better agreement with global estimates of the sediment oxygen demand. The impact on the major macronutrients (nitrate and phosphate) remains modest. However, iron (Fe) distribution is strongly altered, especially in the upper mesopelagic zone as a result of more intense scavenging: vertical gradients in Fe are milder in the upper ocean, which appears to be closer to observations. Thus, our study shows that the variable lability of POC can play a critical role in the marine

  9. Spectroscopic determination of inverse photon efficiencies of W atoms in the scrape-off layer of TEXTOR

    NASA Astrophysics Data System (ADS)

    Brezinsek, S.; Laengner, M.; Coenen, J. W.; O'Mullane, M. G.; Pospieszczyk, A.; Sergienko, G.; Samm, U.

    2017-12-01

    Optical emission spectroscopy can be applied to determine in situ tungsten particle fluxes from erosion processes at plasma-facing materials. Inverse photon efficiencies convert photon fluxes of WI and WII line transitions into W and {{{W}}}+ particle fluxes, respectively, dependening on the local plasma conditions. Experiments in TEXTOR were carried out to determine effective conversion factors for different WI and WII transitions with the aid of WF6 injection into deuterium scrape-off layer plasmas in the electron temperature T e range between {T}{e}=20 {eV} and {T}{e}=82 {eV}. The inverse photon efficiencies or so-called effective \\tfrac{S}{{XB}}-values have been determined for WI lines at λ =400.9 {nm}, 429.5 nm, 488.7 nm, 498.3 nm, and 522.5 nm as well as for WII at λ =434.6 {nm} and compared with theoretical calculations from the ADAS data base. Moreover, a multi-machine scaling for the \\tfrac{S}{{XB}}-value in the range of T e between 2...100 {eV} has been determined for the most prominent WI line at λ =400.9 {nm} to \\tfrac{S}{{XB}}({T}{e})=53.63-56.07× {e}(0.045× {T{e}[{eV}])} considering experimental data from TEXTOR, ASDEX Upgrade, PSI and PISCES. Comparison with ADAS calculations for the same transition reveal a good qualitative agreement with the dependence on T e , but an underestimation of ADAS calculations of less than 25% over the full covered range of experimentally accessible T e in the multi-machine scaling. A good agreement within the experimental uncertainties is found between TEXTOR and ADAS \\tfrac{S}{{XB}}-values for WI at λ =429.5 {nm} and λ =488.7 {nm} whereas an underestimation of up to a factor two of ADAS values for WI at λ =522.5 {nm} and λ =498.3 {nm} was measured. Potentially, reasons for the discrepancy are an overestimation of applied ionisation rate coefficients in ADAS for neutral W and a stronger electron dependence n e for these transitions.

  10. Oceanic N2O emissions in the 21st century

    NASA Astrophysics Data System (ADS)

    Martinez-Rey, J.; Bopp, L.; Gehlen, M.; Tagliabue, A.; Gruber, N.

    2014-12-01

    The ocean is a substantial source of nitrous oxide (N2O) to the atmosphere, but little is known on how this flux might change in the future. Here, we investigate the potential evolution of marine N2O emissions in the 21st century in response to anthropogenic climate change using the global ocean biogeochemical model NEMO-PISCES. We implemented two different parameterizations of N2O production, which differ primarily at low oxygen (O2) conditions. When forced with output from a climate model simulation run under the business-as-usual high CO2 concentration scenario (RCP8.5), our simulations suggest a decrease of 4 to 12% in N2O emissions from 2005 to 2100, i.e., a reduction from 4.03/3.71 to 3.54/3.56 Tg N yr-1 depending on the parameterization. The emissions decrease strongly in the western basins of the Pacific and Atlantic oceans, while they tend to increase above the Oxygen Minimum Zones (OMZs), i.e., in the Eastern Tropical Pacific and in the northern Indian Ocean. The reduction in N2O emissions is caused on the one hand by weakened nitrification as a consequence of reduced primary and export production, and on the other hand by stronger vertical stratification, which reduces the transport of N2O from the ocean interior to the ocean surface. The higher emissions over the OMZ are linked to an expansion of these zones under global warming, which leads to increased N2O production associated primarily with denitrification. From the perspective of a global climate system, the averaged feedback strength associated with the projected decrease in oceanic N2O emissions amounts to around -0.009 W m-2 K-1, which is comparable to the potential increase from terrestrial N2O sources. However, the assesment for a compensation between the terrestrial and marine feedbacks calls for an improved representation of N2O production terms in fully coupled next generation of Earth System Models.

  11. Measured Copper Toxicity to Cnesterodon decemmaculatus (Pisces: Poeciliidae) and Predicted by Biotic Ligand Model in Pilcomayo River Water: A Step for a Cross-Fish-Species Extrapolation

    PubMed Central

    Casares, María Victoria; de Cabo, Laura I.; Seoane, Rafael S.; Natale, Oscar E.; Castro Ríos, Milagros; Weigandt, Cristian; de Iorio, Alicia F.

    2012-01-01

    In order to determine copper toxicity (LC50) to a local species (Cnesterodon decemmaculatus) in the South American Pilcomayo River water and evaluate a cross-fish-species extrapolation of Biotic Ligand Model, a 96 h acute copper toxicity test was performed. The dissolved copper concentrations tested were 0.05, 0.19, 0.39, 0.61, 0.73, 1.01, and 1.42 mg Cu L−1. The 96 h Cu LC50 calculated was 0.655 mg L−1 (0.823 − 0.488). 96-h Cu LC50 predicted by BLM for Pimephales promelas was 0.722 mg L−1. Analysis of the inter-seasonal variation of the main water quality parameters indicates that a higher protective effect of calcium, magnesium, sodium, sulphate, and chloride is expected during the dry season. The very high load of total suspended solids in this river might be a key factor in determining copper distribution between solid and solution phases. A cross-fish-species extrapolation of copper BLM is valid within the water quality parameters and experimental conditions of this toxicity test. PMID:22523491

  12. Peripherally InSerted CEntral catheter dressing and securement in patients with cancer: the PISCES trial. Protocol for a 2x2 factorial, superiority randomised controlled trial.

    PubMed

    Rickard, Claire M; Marsh, Nicole M; Webster, Joan; Gavin, Nicole C; Chan, Raymond J; McCarthy, Alexandra L; Mollee, Peter; Ullman, Amanda J; Kleidon, Tricia; Chopra, Vineet; Zhang, Li; McGrail, Matthew R; Larsen, Emily; Choudhury, Md Abu; Keogh, Samantha; Alexandrou, Evan; McMillan, David J; Mervin, Merehau Cindy; Paterson, David L; Cooke, Marie; Ray-Barruel, Gillian; Castillo, Maria Isabel; Hallahan, Andrew; Corley, Amanda; Geoffrey Playford, E

    2017-06-15

    Around 30% of peripherally inserted central catheters (PICCs) fail from vascular, infectious or mechanical complications. Patients with cancer are at highest risk, and this increases morbidity, mortality and costs. Effective PICC dressing and securement may prevent PICC failure; however, no large randomised controlled trial (RCT) has compared alternative approaches. We designed this RCT to assess the clinical and cost-effectiveness of dressing and securements to prevent PICC failure. Pragmatic, multicentre, 2×2 factorial, superiority RCT of (1) dressings (chlorhexidine gluconate disc (CHG) vs no disc) and (2) securements (integrated securement dressing (ISD) vs securement device (SED)). A qualitative evaluation using a knowledge translation framework is included. Recruitment of 1240 patients will occur over 3 years with allocation concealment until randomisation by a centralised service. For the dressing hypothesis, we hypothesise CHG discs will reduce catheter-associated bloodstream infection (CABSI) compared with no CHG disc. For the securement hypothesis, we hypothesise that ISD will reduce composite PICC failure (infection (CABSI/local infection), occlusion, dislodgement or thrombosis), compared with SED. types of PICC failure; safety; costs; dressing/securement failure; dwell time; microbial colonisation; reversible PICC complications and consumer acceptability. Relative incidence rates of CABSI and PICC failure/100 devices and/1000 PICC days (with 95% CIs) will summarise treatment impact. Kaplan-Meier survival curves (and log rank Mantel-Haenszel test) will compare outcomes over time. Secondary end points will be compared between groups using parametric/non-parametric techniques; p values <0.05 will be considered to be statistically significant. Ethical approval from Queensland Health (HREC/15/QRCH/241) and Griffith University (Ref. No. 2016/063). Results will be published. Trial registration number is: ACTRN12616000315415. © Article author(s) (or their employer(s) unless otherwise stated in the text of the article) 2017. All rights reserved. No commercial use is permitted unless otherwise expressly granted.

  13. Saurida lessepsianus a new species of lizardfish (Pisces: Synodontidae) from the Red Sea and Mediterranean Sea, with a key to Saurida species in the Red Sea.

    PubMed

    Russell, Barry C; Golani, Daniel; Tikochinski, Yaron

    2015-05-12

    Saurida lessepsianus n. sp., a lizardfish (Aulopiformes: Synodontidae) from the Red Sea and Mediterranean Sea, previously misidentified as S. undosquamis (Richardson) and more recently as S. macrolepis Tanaka, is described as a new species. It is characterised by the following combination of characters: dorsal fin with 11-12 rays; pectoral fins with 13-15 rays; lateral-line scales 47-51; transverse scale rows above lateral line 4½, below lateral line 5½; pectoral fins moderately long (extending to between just before or just beyond a line from origin of pelvic fins to origin of dorsal fin); 2 rows of teeth on outer palatines; 0-2 teeth on vomer; tongue with 3-6 rows of teeth posteriorly; caudal peduncle slightly compressed (depth a little more than width); upper margin of caudal fin with row of 3-8 (usually 6 or 7) small black spots; stomach pale grey to blackish anteriorly; intestine whitish. The species is common in the Red Sea and as a result of Lessepsian migration through the Suez Canal, it is now widely distributed in the eastern Mediterranean. The taxonomic status of two other Red Sea nominal species, Saurus badimottah Rüppell [= Saurida tumbil (Bloch)] and Saurida sinaitica Dollfus in Gruvel (a nomen nudum), is clarified. A key is provided for the species of Saurida in the Red Sea.

  14. Effects of dreissenids on monitoring and management of fisheries in western Lake Erie

    USGS Publications Warehouse

    Stapanian, Martin A.; Kocovsky, Patrick M.

    2013-01-01

    omiscomaycus Walbaum) had lower mean daytime catchability than nighttime catchability after dreissenids became established, which supported the hypothesis of greater trawl avoidance during daytime following establishment of dreissenids. Results from freshwater drum (Aplodinotus grunniens Rafinesque) were opposite those of the other three species, which may be a result of behavioral shifts due to freshwater drum feeding on dreissenids mussels. Collectively, these three studies suggest that dreissenids indirectly affected our ability to assess fish populations, which further affects estimates of fish densities and relationships between indices of abundance and true abundance.

  15. Environmental DNA for freshwater fish monitoring: insights for conservation within a protected area

    PubMed Central

    Sandin, Miguel M.; Beaulieu, Paul G.; Clusa, Laura; Martinez, Jose L.; Ardura, Alba; García-Vázquez, Eva

    2018-01-01

    Background Many fish species have been introduced in wild ecosystems around the world to provide food or leisure, deliberately or from farm escapes. Some of those introductions have had large ecological effects. The north American native rainbow trout (Oncorhynchus mykiss Walbaum, 1792) is one of the most widely farmed fish species in the world. It was first introduced in Spain in the late 19th century for sport fishing (Elvira 1995) and nowadays is used there for both fishing and aquaculture. On the other hand, the European native brown trout (Salmo trutta L.) is catalogued as vulnerable in Spain. Detecting native and invasive fish populations in ecosystem monitoring is crucial, but it may be difficult from conventional sampling methods such as electrofishing. These techniques encompass some mortality, thus are not adequate for some ecosystems as the case of protected areas. Environmental DNA (eDNA) analysis is a sensitive and non-invasive method that can be especially useful for rare and low-density species detection and inventory in water bodies. Methods In this study we employed two eDNA based methods (qPCR and nested PCR-RFLP) to detect salmonid species from mountain streams within a protected area, The Biosphere Reserve and Natural Park of Redes (Upper Nalón Basin, Asturias, Northern Spain), where brown trout is the only native salmonid. We also measured some habitat variables to see how appropriate for salmonids the area is. The sampling area is located upstream impassable dams and contains one rainbow trout fish farm. Results Employing qPCR methodology, brown trout eDNA was detected in all the nine sampling sites surveyed, while nested PCR-RFLP method failed to detect it in two sampling points. Rainbow trout eDNA was detected with both techniques at all sites in the Nalón River’ (n1, n2 and n3). Salmonid habitat units and water quality were high from the area studied. Discussion In this study, a high quantity of rainbow trout eDNA was found upstream and

  16. Environmental DNA for freshwater fish monitoring: insights for conservation within a protected area.

    PubMed

    Fernandez, Sara; Sandin, Miguel M; Beaulieu, Paul G; Clusa, Laura; Martinez, Jose L; Ardura, Alba; García-Vázquez, Eva

    2018-01-01

    Many fish species have been introduced in wild ecosystems around the world to provide food or leisure, deliberately or from farm escapes. Some of those introductions have had large ecological effects. The north American native rainbow trout ( Oncorhynchus mykiss Walbaum, 1792) is one of the most widely farmed fish species in the world. It was first introduced in Spain in the late 19th century for sport fishing (Elvira 1995) and nowadays is used there for both fishing and aquaculture. On the other hand, the European native brown trout ( Salmo trutta L.) is catalogued as vulnerable in Spain. Detecting native and invasive fish populations in ecosystem monitoring is crucial, but it may be difficult from conventional sampling methods such as electrofishing. These techniques encompass some mortality, thus are not adequate for some ecosystems as the case of protected areas. Environmental DNA (eDNA) analysis is a sensitive and non-invasive method that can be especially useful for rare and low-density species detection and inventory in water bodies. In this study we employed two eDNA based methods (qPCR and nested PCR-RFLP) to detect salmonid species from mountain streams within a protected area, The Biosphere Reserve and Natural Park of Redes (Upper Nalón Basin, Asturias, Northern Spain), where brown trout is the only native salmonid. We also measured some habitat variables to see how appropriate for salmonids the area is. The sampling area is located upstream impassable dams and contains one rainbow trout fish farm. Employing qPCR methodology, brown trout eDNA was detected in all the nine sampling sites surveyed, while nested PCR-RFLP method failed to detect it in two sampling points. Rainbow trout eDNA was detected with both techniques at all sites in the Nalón River' (n1, n2 and n3). Salmonid habitat units and water quality were high from the area studied. In this study, a high quantity of rainbow trout eDNA was found upstream and downstream of a fish farm located

  17. Yersinia ruckeri Isolates Recovered from Diseased Atlantic Salmon (Salmo salar) in Scotland Are More Diverse than Those from Rainbow Trout (Oncorhynchus mykiss) and Represent Distinct Subpopulations

    PubMed Central

    Ormsby, Michael J.; Caws, Thomas; Burchmore, Richard; Wallis, Tim; Verner-Jeffreys, David W.

    2016-01-01

    ABSTRACT Yersinia ruckeri is the etiological agent of enteric redmouth (ERM) disease of farmed salmonids. Enteric redmouth disease is traditionally associated with rainbow trout (Oncorhynchus mykiss, Walbaum), but its incidence in Atlantic salmon (Salmo salar) is increasing. Yersinia ruckeri isolates recovered from diseased Atlantic salmon have been poorly characterized, and very little is known about the relationship of the isolates associated with these two species. Phenotypic approaches were used to characterize 109 Y. ruckeri isolates recovered over a 14-year period from infected Atlantic salmon in Scotland; 26 isolates from infected rainbow trout were also characterized. Biotyping, serotyping, and comparison of outer membrane protein profiles identified 19 Y. ruckeri clones associated with Atlantic salmon but only five associated with rainbow trout; none of the Atlantic salmon clones occurred in rainbow trout and vice versa. These findings suggest that distinct subpopulations of Y. ruckeri are associated with each species. A new O serotype (designated O8) was identified in 56 biotype 1 Atlantic salmon isolates and was the most common serotype identified from 2006 to 2011 and in 2014, suggesting an increased prevalence during the time period sampled. Rainbow trout isolates were represented almost exclusively by the same biotype 2, serotype O1 clone that has been responsible for the majority of ERM outbreaks in this species within the United Kingdom since the 1980s. However, the identification of two biotype 2, serotype O8 isolates in rainbow trout suggests that vaccines containing serotypes O1 and O8 should be evaluated in both rainbow trout and Atlantic salmon for application in Scotland. IMPORTANCE Vaccination plays an important role in protecting Atlantic salmon against the bacterial pathogen Yersinia ruckeri, but, in recent years, there has been an increasing incidence of vaccine breakdown in salmon. This is largely because current vaccines are aimed at

  18. Yersinia ruckeri Isolates Recovered from Diseased Atlantic Salmon (Salmo salar) in Scotland Are More Diverse than Those from Rainbow Trout (Oncorhynchus mykiss) and Represent Distinct Subpopulations.

    PubMed

    Ormsby, Michael J; Caws, Thomas; Burchmore, Richard; Wallis, Tim; Verner-Jeffreys, David W; Davies, Robert L

    2016-10-01

    Yersinia ruckeri is the etiological agent of enteric redmouth (ERM) disease of farmed salmonids. Enteric redmouth disease is traditionally associated with rainbow trout (Oncorhynchus mykiss, Walbaum), but its incidence in Atlantic salmon (Salmo salar) is increasing. Yersinia ruckeri isolates recovered from diseased Atlantic salmon have been poorly characterized, and very little is known about the relationship of the isolates associated with these two species. Phenotypic approaches were used to characterize 109 Y. ruckeri isolates recovered over a 14-year period from infected Atlantic salmon in Scotland; 26 isolates from infected rainbow trout were also characterized. Biotyping, serotyping, and comparison of outer membrane protein profiles identified 19 Y. ruckeri clones associated with Atlantic salmon but only five associated with rainbow trout; none of the Atlantic salmon clones occurred in rainbow trout and vice versa These findings suggest that distinct subpopulations of Y. ruckeri are associated with each species. A new O serotype (designated O8) was identified in 56 biotype 1 Atlantic salmon isolates and was the most common serotype identified from 2006 to 2011 and in 2014, suggesting an increased prevalence during the time period sampled. Rainbow trout isolates were represented almost exclusively by the same biotype 2, serotype O1 clone that has been responsible for the majority of ERM outbreaks in this species within the United Kingdom since the 1980s. However, the identification of two biotype 2, serotype O8 isolates in rainbow trout suggests that vaccines containing serotypes O1 and O8 should be evaluated in both rainbow trout and Atlantic salmon for application in Scotland. Vaccination plays an important role in protecting Atlantic salmon against the bacterial pathogen Yersinia ruckeri, but, in recent years, there has been an increasing incidence of vaccine breakdown in salmon. This is largely because current vaccines are aimed at rainbow trout and are

  19. 2D or Not 2D? Testing the Utility of 2D Vs. 3D Landmark Data in Geometric Morphometrics of the Sculpin Subfamily Oligocottinae (Pisces; Cottoidea).

    PubMed

    Buser, Thaddaeus J; Sidlauskas, Brian L; Summers, Adam P

    2018-05-01

    We contrast 2D vs. 3D landmark-based geometric morphometrics in the fish subfamily Oligocottinae by using 3D landmarks from CT-generated models and comparing the morphospace of the 3D landmarks to one based on 2D landmarks from images. The 2D and 3D shape variables capture common patterns across taxa, such that the pairwise Procrustes distances among taxa correspond and the trends captured by principal component analysis are similar in the xy plane. We use the two sets of landmarks to test several ecomorphological hypotheses from the literature. Both 2D and 3D data reject the hypothesis that head shape correlates significantly with the depth at which a species is commonly found. However, in taxa where shape variation in the z-axis is high, the 2D shape variables show sufficiently strong distortion to influence the outcome of the hypothesis tests regarding the relationship between mouth size and feeding ecology. Only the 3D data support previous studies which showed that large mouth sizes correlate positively with high percentages of elusive prey in the diet. When used to test for morphological divergence, 3D data show no evidence of divergence, while 2D data show that one clade of oligocottines has diverged from all others. This clade shows the greatest degree of z-axis body depth within Oligocottinae, and we conclude that the inability of the 2D approach to capture this lateral body depth causes the incongruence between 2D and 3D analyses. Anat Rec, 301:806-818, 2018. © 2017 Wiley Periodicals, Inc. © 2017 Wiley Periodicals, Inc.

  20. Multi-scale modelling to relate beryllium surface temperature, deuterium concentration and erosion in fusion reactor environment

    DOE PAGES

    Safi, E.; Valles, G.; Lasa, A.; ...

    2017-03-27

    D surface concentrations at higher temperatures. Finally, these findings correlate well with different experiments performed at JET and PISCES-B devices.« less