DOE Office of Scientific and Technical Information (OSTI.GOV)

Brun, E., E-mail: emmanuel.brun@esrf.fr; Grandl, S.; Sztrókay-Gaul, A.

Purpose: Phase contrast computed tomography has emerged as an imaging method, which is able to outperform present day clinical mammography in breast tumor visualization while maintaining an equivalent average dose. To this day, no segmentation technique takes into account the specificity of the phase contrast signal. In this study, the authors propose a new mathematical framework for human-guided breast tumor segmentation. This method has been applied to high-resolution images of excised human organs, each of several gigabytes. Methods: The authors present a segmentation procedure based on the viscous watershed transform and demonstrate the efficacy of this method on analyzer basedmore » phase contrast images. The segmentation of tumors inside two full human breasts is then shown as an example of this procedure’s possible applications. Results: A correct and precise identification of the tumor boundaries was obtained and confirmed by manual contouring performed independently by four experienced radiologists. Conclusions: The authors demonstrate that applying the watershed viscous transform allows them to perform the segmentation of tumors in high-resolution x-ray analyzer based phase contrast breast computed tomography images. Combining the additional information provided by the segmentation procedure with the already high definition of morphological details and tissue boundaries offered by phase contrast imaging techniques, will represent a valuable multistep procedure to be used in future medical diagnostic applications.« less

Breast tumor segmentation in high resolution x-ray phase contrast analyzer based computed tomography.

PubMed

Brun, E; Grandl, S; Sztrókay-Gaul, A; Barbone, G; Mittone, A; Gasilov, S; Bravin, A; Coan, P

2014-11-01

Phase contrast computed tomography has emerged as an imaging method, which is able to outperform present day clinical mammography in breast tumor visualization while maintaining an equivalent average dose. To this day, no segmentation technique takes into account the specificity of the phase contrast signal. In this study, the authors propose a new mathematical framework for human-guided breast tumor segmentation. This method has been applied to high-resolution images of excised human organs, each of several gigabytes. The authors present a segmentation procedure based on the viscous watershed transform and demonstrate the efficacy of this method on analyzer based phase contrast images. The segmentation of tumors inside two full human breasts is then shown as an example of this procedure's possible applications. A correct and precise identification of the tumor boundaries was obtained and confirmed by manual contouring performed independently by four experienced radiologists. The authors demonstrate that applying the watershed viscous transform allows them to perform the segmentation of tumors in high-resolution x-ray analyzer based phase contrast breast computed tomography images. Combining the additional information provided by the segmentation procedure with the already high definition of morphological details and tissue boundaries offered by phase contrast imaging techniques, will represent a valuable multistep procedure to be used in future medical diagnostic applications.

Microscopic image analysis for reticulocyte based on watershed algorithm

NASA Astrophysics Data System (ADS)

Wang, J. Q.; Liu, G. F.; Liu, J. G.; Wang, G.

2007-12-01

We present a watershed-based algorithm in the analysis of light microscopic image for reticulocyte (RET), which will be used in an automated recognition system for RET in peripheral blood. The original images, obtained by micrography, are segmented by modified watershed algorithm and are recognized in term of gray entropy and area of connective area. In the process of watershed algorithm, judgment conditions are controlled according to character of the image, besides, the segmentation is performed by morphological subtraction. The algorithm was simulated with MATLAB software. It is similar for automated and manual scoring and there is good correlation(r=0.956) between the methods, which is resulted from 50 pieces of RET images. The result indicates that the algorithm for peripheral blood RETs is comparable to conventional manual scoring, and it is superior in objectivity. This algorithm avoids time-consuming calculation such as ultra-erosion and region-growth, which will speed up the computation consequentially.

Development of Land Segmentation, Stream-Reach Network, and Watersheds in Support of Hydrological Simulation Program-Fortran (HSPF) Modeling, Chesapeake Bay Watershed, and Adjacent Parts of Maryland, Delaware, and Virginia

USGS Publications Warehouse

Martucci, Sarah K.; Krstolic, Jennifer L.; Raffensperger, Jeff P.; Hopkins, Katherine J.

2006-01-01

The U.S. Geological Survey, U.S. Environmental Protection Agency Chesapeake Bay Program Office, Interstate Commission on the Potomac River Basin, Maryland Department of the Environment, Virginia Department of Conservation and Recreation, Virginia Department of Environmental Quality, and the University of Maryland Center for Environmental Science are collaborating on the Chesapeake Bay Regional Watershed Model, using Hydrological Simulation Program - FORTRAN to simulate streamflow and concentrations and loads of nutrients and sediment to Chesapeake Bay. The model will be used to provide information for resource managers. In order to establish a framework for model simulation, digital spatial datasets were created defining the discretization of the model region (including the Chesapeake Bay watershed, as well as the adjacent parts of Maryland, Delaware, and Virginia outside the watershed) into land segments, a stream-reach network, and associated watersheds. Land segmentation was based on county boundaries represented by a 1:100,000-scale digital dataset. Fifty of the 254 counties and incorporated cities in the model region were divided on the basis of physiography and topography, producing a total of 309 land segments. The stream-reach network for the Chesapeake Bay watershed part of the model region was based on the U.S. Geological Survey Chesapeake Bay SPARROW (SPAtially Referenced Regressions On Watershed attributes) model stream-reach network. Because that network was created only for the Chesapeake Bay watershed, the rest of the model region uses a 1:500,000-scale stream-reach network. Streams with mean annual streamflow of less than 100 cubic feet per second were excluded based on attributes from the dataset. Additional changes were made to enhance the data and to allow for inclusion of stream reaches with monitoring data that were not part of the original network. Thirty-meter-resolution Digital Elevation Model data were used to delineate watersheds for each stream reach. State watershed boundaries replaced the Digital Elevation Model-derived watersheds where coincident. After a number of corrections, the watersheds were coded to indicate major and minor basin, mean annual streamflow, and each watershed's unique identifier as well as that of the downstream watershed. Land segments and watersheds were intersected to create land-watershed segments for the model.

Segmentation of the glottal space from laryngeal images using the watershed transform.

PubMed

Osma-Ruiz, Víctor; Godino-Llorente, Juan I; Sáenz-Lechón, Nicolás; Fraile, Rubén

2008-04-01

The present work describes a new method for the automatic detection of the glottal space from laryngeal images obtained either with high speed or with conventional video cameras attached to a laryngoscope. The detection is based on the combination of several relevant techniques in the field of digital image processing. The image is segmented with a watershed transform followed by a region merging, while the final decision is taken using a simple linear predictor. This scheme has successfully segmented the glottal space in all the test images used. The method presented can be considered a generalist approach for the segmentation of the glottal space because, in contrast with other methods found in literature, this approach does not need either initialization or finding strict environmental conditions extracted from the images to be processed. Therefore, the main advantage is that the user does not have to outline the region of interest with a mouse click. In any case, some a priori knowledge about the glottal space is needed, but this a priori knowledge can be considered weak compared to the environmental conditions fixed in former works.

Segmentation of White Blood Cells From Microscopic Images Using a Novel Combination of K-Means Clustering and Modified Watershed Algorithm.

PubMed

Ghane, Narjes; Vard, Alireza; Talebi, Ardeshir; Nematollahy, Pardis

2017-01-01

Recognition of white blood cells (WBCs) is the first step to diagnose some particular diseases such as acquired immune deficiency syndrome, leukemia, and other blood-related diseases that are usually done by pathologists using an optical microscope. This process is time-consuming, extremely tedious, and expensive and needs experienced experts in this field. Thus, a computer-aided diagnosis system that assists pathologists in the diagnostic process can be so effective. Segmentation of WBCs is usually a first step in developing a computer-aided diagnosis system. The main purpose of this paper is to segment WBCs from microscopic images. For this purpose, we present a novel combination of thresholding, k-means clustering, and modified watershed algorithms in three stages including (1) segmentation of WBCs from a microscopic image, (2) extraction of nuclei from cell's image, and (3) separation of overlapping cells and nuclei. The evaluation results of the proposed method show that similarity measures, precision, and sensitivity respectively were 92.07, 96.07, and 94.30% for nucleus segmentation and 92.93, 97.41, and 93.78% for cell segmentation. In addition, statistical analysis presents high similarity between manual segmentation and the results obtained by the proposed method.

Segmentation of DTI based on tensorial morphological gradient

NASA Astrophysics Data System (ADS)

Rittner, Leticia; de Alencar Lotufo, Roberto

2009-02-01

This paper presents a segmentation technique for diffusion tensor imaging (DTI). This technique is based on a tensorial morphological gradient (TMG), defined as the maximum dissimilarity over the neighborhood. Once this gradient is computed, the tensorial segmentation problem becomes an scalar one, which can be solved by conventional techniques, such as watershed transform and thresholding. Similarity functions, namely the dot product, the tensorial dot product, the J-divergence and the Frobenius norm, were compared, in order to understand their differences regarding the measurement of tensor dissimilarities. The study showed that the dot product and the tensorial dot product turned out to be inappropriate for computation of the TMG, while the Frobenius norm and the J-divergence were both capable of measuring tensor dissimilarities, despite the distortion of Frobenius norm, since it is not an affine invariant measure. In order to validate the TMG as a solution for DTI segmentation, its computation was performed using distinct similarity measures and structuring elements. TMG results were also compared to fractional anisotropy. Finally, synthetic and real DTI were used in the method validation. Experiments showed that the TMG enables the segmentation of DTI by watershed transform or by a simple choice of a threshold. The strength of the proposed segmentation method is its simplicity and robustness, consequences of TMG computation. It enables the use, not only of well-known algorithms and tools from the mathematical morphology, but also of any other segmentation method to segment DTI, since TMG computation transforms tensorial images in scalar ones.

Riverine threat indices to assess watershed condition and identify primary management capacity of agriculture natural resource management agencies.

PubMed

Fore, Jeffrey D; Sowa, Scott P; Galat, David L; Annis, Gust M; Diamond, David D; Rewa, Charles

2014-03-01

Managers can improve conservation of lotic systems over large geographies if they have tools to assess total watershed conditions for individual stream segments and can identify segments where conservation practices are most likely to be successful (i.e., primary management capacity). The goal of this research was to develop a suite of threat indices to help agriculture resource management agencies select and prioritize watersheds across Missouri River basin in which to implement agriculture conservation practices. We quantified watershed percentages or densities of 17 threat metrics that represent major sources of ecological stress to stream communities into five threat indices: agriculture, urban, point-source pollution, infrastructure, and all non-agriculture threats. We identified stream segments where agriculture management agencies had primary management capacity. Agriculture watershed condition differed by ecoregion and considerable local variation was observed among stream segments in ecoregions of high agriculture threats. Stream segments with high non-agriculture threats were most concentrated near urban areas, but showed high local variability. 60 % of stream segments in the basin were classified as under U.S. Department of Agriculture's Natural Resources Conservation Service (NRCS) primary management capacity and most segments were in regions of high agricultural threats. NRCS primary management capacity was locally variable which highlights the importance of assessing total watershed condition for multiple threats. Our threat indices can be used by agriculture resource management agencies to prioritize conservation actions and investments based on: (a) relative severity of all threats, (b) relative severity of agricultural threats, and (c) and degree of primary management capacity.

Automated red blood cells extraction from holographic images using fully convolutional neural networks.

PubMed

Yi, Faliu; Moon, Inkyu; Javidi, Bahram

2017-10-01

In this paper, we present two models for automatically extracting red blood cells (RBCs) from RBCs holographic images based on a deep learning fully convolutional neural network (FCN) algorithm. The first model, called FCN-1, only uses the FCN algorithm to carry out RBCs prediction, whereas the second model, called FCN-2, combines the FCN approach with the marker-controlled watershed transform segmentation scheme to achieve RBCs extraction. Both models achieve good segmentation accuracy. In addition, the second model has much better performance in terms of cell separation than traditional segmentation methods. In the proposed methods, the RBCs phase images are first numerically reconstructed from RBCs holograms recorded with off-axis digital holographic microscopy. Then, some RBCs phase images are manually segmented and used as training data to fine-tune the FCN. Finally, each pixel in new input RBCs phase images is predicted into either foreground or background using the trained FCN models. The RBCs prediction result from the first model is the final segmentation result, whereas the result from the second model is used as the internal markers of the marker-controlled transform algorithm for further segmentation. Experimental results show that the given schemes can automatically extract RBCs from RBCs phase images and much better RBCs separation results are obtained when the FCN technique is combined with the marker-controlled watershed segmentation algorithm.

Automated red blood cells extraction from holographic images using fully convolutional neural networks

PubMed Central

Yi, Faliu; Moon, Inkyu; Javidi, Bahram

2017-01-01

In this paper, we present two models for automatically extracting red blood cells (RBCs) from RBCs holographic images based on a deep learning fully convolutional neural network (FCN) algorithm. The first model, called FCN-1, only uses the FCN algorithm to carry out RBCs prediction, whereas the second model, called FCN-2, combines the FCN approach with the marker-controlled watershed transform segmentation scheme to achieve RBCs extraction. Both models achieve good segmentation accuracy. In addition, the second model has much better performance in terms of cell separation than traditional segmentation methods. In the proposed methods, the RBCs phase images are first numerically reconstructed from RBCs holograms recorded with off-axis digital holographic microscopy. Then, some RBCs phase images are manually segmented and used as training data to fine-tune the FCN. Finally, each pixel in new input RBCs phase images is predicted into either foreground or background using the trained FCN models. The RBCs prediction result from the first model is the final segmentation result, whereas the result from the second model is used as the internal markers of the marker-controlled transform algorithm for further segmentation. Experimental results show that the given schemes can automatically extract RBCs from RBCs phase images and much better RBCs separation results are obtained when the FCN technique is combined with the marker-controlled watershed segmentation algorithm. PMID:29082078

Using multimodal information for the segmentation of fluorescent micrographs with application to virology and microbiology.

PubMed

Held, Christian; Wenzel, Jens; Webel, Rike; Marschall, Manfred; Lang, Roland; Palmisano, Ralf; Wittenberg, Thomas

2011-01-01

In order to improve reproducibility and objectivity of fluorescence microscopy based experiments and to enable the evaluation of large datasets, flexible segmentation methods are required which are able to adapt to different stainings and cell types. This adaption is usually achieved by the manual adjustment of the segmentation methods parameters, which is time consuming and challenging for biologists with no knowledge on image processing. To avoid this, parameters of the presented methods automatically adapt to user generated ground truth to determine the best method and the optimal parameter setup. These settings can then be used for segmentation of the remaining images. As robust segmentation methods form the core of such a system, the currently used watershed transform based segmentation routine is replaced by a fast marching level set based segmentation routine which incorporates knowledge on the cell nuclei. Our evaluations reveal that incorporation of multimodal information improves segmentation quality for the presented fluorescent datasets.

Semiautomatic segmentation of liver metastases on volumetric CT images

DOE Office of Scientific and Technical Information (OSTI.GOV)

Yan, Jiayong; Schwartz, Lawrence H.; Zhao, Binsheng, E-mail: bz2166@cumc.columbia.edu

2015-11-15

Purpose: Accurate segmentation and quantification of liver metastases on CT images are critical to surgery/radiation treatment planning and therapy response assessment. To date, there are no reliable methods to perform such segmentation automatically. In this work, the authors present a method for semiautomatic delineation of liver metastases on contrast-enhanced volumetric CT images. Methods: The first step is to manually place a seed region-of-interest (ROI) in the lesion on an image. This ROI will (1) serve as an internal marker and (2) assist in automatically identifying an external marker. With these two markers, lesion contour on the image can be accuratelymore » delineated using traditional watershed transformation. Density information will then be extracted from the segmented 2D lesion and help determine the 3D connected object that is a candidate of the lesion volume. The authors have developed a robust strategy to automatically determine internal and external markers for marker-controlled watershed segmentation. By manually placing a seed region-of-interest in the lesion to be delineated on a reference image, the method can automatically determine dual threshold values to approximately separate the lesion from its surrounding structures and refine the thresholds from the segmented lesion for the accurate segmentation of the lesion volume. This method was applied to 69 liver metastases (1.1–10.3 cm in diameter) from a total of 15 patients. An independent radiologist manually delineated all lesions and the resultant lesion volumes served as the “gold standard” for validation of the method’s accuracy. Results: The algorithm received a median overlap, overestimation ratio, and underestimation ratio of 82.3%, 6.0%, and 11.5%, respectively, and a median average boundary distance of 1.2 mm. Conclusions: Preliminary results have shown that volumes of liver metastases on contrast-enhanced CT images can be accurately estimated by a semiautomatic segmentation method.« less

A new method for sperm characterization for infertility treatment: hypothesis testing by using combination of watershed segmentation and graph theory.

PubMed

Shojaedini, Seyed Vahab; Heydari, Masoud

2014-10-01

Shape and movement features of sperms are important parameters for infertility study and treatment. In this article, a new method is introduced for characterization sperms in microscopic videos. In this method, first a hypothesis framework is defined to distinguish sperms from other particles in captured video. Then decision about each hypothesis is done in following steps: Selecting some primary regions as candidates for sperms by watershed-based segmentation, pruning of some false candidates during successive frames using graph theory concept and finally confirming correct sperms by using their movement trajectories. Performance of the proposed method is evaluated on real captured images belongs to semen with high density of sperms. The obtained results show the proposed method may detect 97% of sperms in presence of 5% false detections and track 91% of moving sperms. Furthermore, it can be shown that better characterization of sperms in proposed algorithm doesn't lead to extracting more false sperms compared to some present approaches.

SAR image change detection using watershed and spectral clustering

NASA Astrophysics Data System (ADS)

Niu, Ruican; Jiao, L. C.; Wang, Guiting; Feng, Jie

2011-12-01

A new method of change detection in SAR images based on spectral clustering is presented in this paper. Spectral clustering is employed to extract change information from a pair images acquired on the same geographical area at different time. Watershed transform is applied to initially segment the big image into non-overlapped local regions, leading to reduce the complexity. Experiments results and system analysis confirm the effectiveness of the proposed algorithm.

Smart markers for watershed-based cell segmentation.

PubMed

Koyuncu, Can Fahrettin; Arslan, Salim; Durmaz, Irem; Cetin-Atalay, Rengul; Gunduz-Demir, Cigdem

2012-01-01

Automated cell imaging systems facilitate fast and reliable analysis of biological events at the cellular level. In these systems, the first step is usually cell segmentation that greatly affects the success of the subsequent system steps. On the other hand, similar to other image segmentation problems, cell segmentation is an ill-posed problem that typically necessitates the use of domain-specific knowledge to obtain successful segmentations even by human subjects. The approaches that can incorporate this knowledge into their segmentation algorithms have potential to greatly improve segmentation results. In this work, we propose a new approach for the effective segmentation of live cells from phase contrast microscopy. This approach introduces a new set of "smart markers" for a marker-controlled watershed algorithm, for which the identification of its markers is critical. The proposed approach relies on using domain-specific knowledge, in the form of visual characteristics of the cells, to define the markers. We evaluate our approach on a total of 1,954 cells. The experimental results demonstrate that this approach, which uses the proposed definition of smart markers, is quite effective in identifying better markers compared to its counterparts. This will, in turn, be effective in improving the segmentation performance of a marker-controlled watershed algorithm.

Active mask segmentation of fluorescence microscope images.

PubMed

Srinivasa, Gowri; Fickus, Matthew C; Guo, Yusong; Linstedt, Adam D; Kovacević, Jelena

2009-08-01

We propose a new active mask algorithm for the segmentation of fluorescence microscope images of punctate patterns. It combines the (a) flexibility offered by active-contour methods, (b) speed offered by multiresolution methods, (c) smoothing offered by multiscale methods, and (d) statistical modeling offered by region-growing methods into a fast and accurate segmentation tool. The framework moves from the idea of the "contour" to that of "inside and outside," or masks, allowing for easy multidimensional segmentation. It adapts to the topology of the image through the use of multiple masks. The algorithm is almost invariant under initialization, allowing for random initialization, and uses a few easily tunable parameters. Experiments show that the active mask algorithm matches the ground truth well and outperforms the algorithm widely used in fluorescence microscopy, seeded watershed, both qualitatively, as well as quantitatively.

Using trainable segmentation and watershed transform for identifying unilocular and multilocular cysts from ultrasound images of ovarian tumour

NASA Astrophysics Data System (ADS)

Ibrahim, Dheyaa Ahmed; Al-Assam, Hisham; Du, Hongbo; Jassim, Sabah

2017-05-01

Ovarian masses are categorised into different types of malignant and benign. In order to optimize patient treatment, it is necessary to carry out pre-operational characterisation of the suspect ovarian mass to determine its category. Ultrasound imaging has been widely used in differentiating malignant from benign cases due to its safe and non-intrusive nature, and can be used for determining the number of cysts in the ovary. Presently, the gynaecologist is tasked with manually counting the number of cysts shown on the ultrasound image. This paper proposes, a new approach that automatically segments the ovarian masses and cysts from a static B-mode image. Initially, the method uses a trainable segmentation procedure and a trained neural network classifier to accurately identify the position of the masses and cysts. After that, the borders of the masses can be appraised using watershed transform. The effectiveness of the proposed method has been tested by comparing the number of cysts identified by the method against the manual examination by a gynaecologist. A total of 65 ultrasound images were used for the comparison, and the results showed that the proposed solution is a viable alternative to the manual counting method for accurately determining the number of cysts in a US ovarian image.

AutoCellSeg: robust automatic colony forming unit (CFU)/cell analysis using adaptive image segmentation and easy-to-use post-editing techniques.

PubMed

Khan, Arif Ul Maula; Torelli, Angelo; Wolf, Ivo; Gretz, Norbert

2018-05-08

In biological assays, automated cell/colony segmentation and counting is imperative owing to huge image sets. Problems occurring due to drifting image acquisition conditions, background noise and high variation in colony features in experiments demand a user-friendly, adaptive and robust image processing/analysis method. We present AutoCellSeg (based on MATLAB) that implements a supervised automatic and robust image segmentation method. AutoCellSeg utilizes multi-thresholding aided by a feedback-based watershed algorithm taking segmentation plausibility criteria into account. It is usable in different operation modes and intuitively enables the user to select object features interactively for supervised image segmentation method. It allows the user to correct results with a graphical interface. This publicly available tool outperforms tools like OpenCFU and CellProfiler in terms of accuracy and provides many additional useful features for end-users.

Computer simulation of storm runoff for three watersheds in Albuquerque, New Mexico

USGS Publications Warehouse

Knutilla, R.L.; Veenhuis, J.E.

1994-01-01

Rainfall-runoff data from three watersheds were selected for calibration and verification of the U.S. Geological Survey's Distributed Routing Rainfall-Runoff Model. The watersheds chosen are residentially developed. The conceptually based model uses an optimization process that adjusts selected parameters to achieve the best fit between measured and simulated runoff volumes and peak discharges. Three of these optimization parameters represent soil-moisture conditions, three represent infiltration, and one accounts for effective impervious area. Each watershed modeled was divided into overland-flow segments and channel segments. The overland-flow segments were further subdivided to reflect pervious and impervious areas. Each overland-flow and channel segment was assigned representative values of area, slope, percentage of imperviousness, and roughness coefficients. Rainfall-runoff data for each watershed were separated into two sets for use in calibration and verification. For model calibration, seven input parameters were optimized to attain a best fit of the data. For model verification, parameter values were set using values from model calibration. The standard error of estimate for calibration of runoff volumes ranged from 19 to 34 percent, and for peak discharge calibration ranged from 27 to 44 percent. The standard error of estimate for verification of runoff volumes ranged from 26 to 31 percent, and for peak discharge verification ranged from 31 to 43 percent.

A method for measuring sediment production from forest roads.

Treesearch

Keith Kahklen

2001-01-01

Predicting sediment production from forest roads is necessary to determine their impact on watersheds and associated terrestrial and stream biota. A method is presented for measuring sediment originating from a road segment for individual storm events and quantifying the delivery to streams. Site selection criteria are listed to describe the characteristics for...

Simulation of nutrient and sediment concentrations and loads in the Delaware inland bays watershed: Extension of the hydrologic and water-quality model to ungaged segments

USGS Publications Warehouse

Gutierrez-Magness, Angelica L.

2006-01-01

Rapid population increases, agriculture, and industrial practices have been identified as important sources of excessive nutrients and sediments in the Delaware Inland Bays watershed. The amount and effect of excessive nutrients and sediments in the Inland Bays watershed have been well documented by the Delaware Geological Survey, the Delaware Department of Natural Resources and Environmental Control, the U.S. Environmental Protection Agency's National Estuary Program, the Delaware Center for Inland Bays, the University of Delaware, and other agencies. This documentation and data previously were used to develop a hydrologic and water-quality model of the Delaware Inland Bays watershed to simulate nutrients and sediment concentrations and loads, and to calibrate the model by comparing concentrations and streamflow data at six stations in the watershed over a limited period of time (October 1998 through April 2000). Although the model predictions of nutrient and sediment concentrations for the calibrated segments were fairly accurate, the predictions for the 28 ungaged segments located near tidal areas, where stream data were not available, were above the range of values measured in the area. The cooperative study established in 2000 by the Delaware Department of Natural Resources and Environmental Control, the Delaware Geological Survey, and the U.S. Geological Survey was extended to evaluate the model predictions in ungaged segments and to ensure that the model, developed as a planning and management tool, could accurately predict nutrient and sediment concentrations within the measured range of values in the area. The evaluation of the predictions was limited to the period of calibration (1999) of the 2003 model. To develop estimates on ungaged watersheds, parameter values from calibrated segments are transferred to the ungaged segments; however, accurate predictions are unlikely where parameter transference is subject to error. The unexpected nutrient and sediment concentrations simulated with the 2003 model were likely the result of inappropriate criteria for the transference of parameter values. From a model-simulation perspective, it is a common practice to transfer parameter values based on the similarity of soils or the similarity of land-use proportions between segments. For the Inland Bays model, the similarity of soils between segments was used as the basis to transfer parameter values. An alternative approach, which is documented in this report, is based on the similarity of the spatial distribution of the land use between segments and the similarity of land-use proportions, as these can be important factors for the transference of parameter values in lumped models. Previous work determined that the difference in the variation of runoff due to various spatial distributions of land use within a watershed can cause substantialloss of accuracy in the model predictions. The incorporation of the spatial distribution of land use to transfer parameter values from calibrated to uncalibrated segments provided more consistent and rational predictions of flow, especially during the summer, and consequently, predictions of lower nutrient concentrations during the same period. For the segments where the similarity of spatial distribution of land use was not clearly established with a calibrated segment, the similarity of the location of the most impervious areas was also used as a criterion for the transference of parameter values. The model predictions from the 28 ungaged segments were verified through comparison with measured in-stream concentrations from local and nearby streams provided by the Delaware Department of Natural Resources and Environmental Control. Model results indicated that the predicted edge-of-stream total suspended solids loads in the Inland Bays watershed were low in comparison to loads reported for the Eastern Shore of Maryland from the Chesapeake Bay watershed model. The flatness of the ter

Model-based morphological segmentation and labeling of coronary angiograms.

PubMed

Haris, K; Efstratiadis, S N; Maglaveras, N; Pappas, C; Gourassas, J; Louridas, G

1999-10-01

A method for extraction and labeling of the coronary arterial tree (CAT) using minimal user supervision in single-view angiograms is proposed. The CAT structural description (skeleton and borders) is produced, along with quantitative information for the artery dimensions and assignment of coded labels, based on a given coronary artery model represented by a graph. The stages of the method are: 1) CAT tracking and detection; 2) artery skeleton and border estimation; 3) feature graph creation; and iv) artery labeling by graph matching. The approximate CAT centerline and borders are extracted by recursive tracking based on circular template analysis. The accurate skeleton and borders of each CAT segment are computed, based on morphological homotopy modification and watershed transform. The approximate centerline and borders are used for constructing the artery segment enclosing area (ASEA), where the defined skeleton and border curves are considered as markers. Using the marked ASEA, an artery gradient image is constructed where all the ASEA pixels (except the skeleton ones) are assigned the gradient magnitude of the original image. The artery gradient image markers are imposed as its unique regional minima by the homotopy modification method, the watershed transform is used for extracting the artery segment borders, and the feature graph is updated. Finally, given the created feature graph and the known model graph, a graph matching algorithm assigns the appropriate labels to the extracted CAT using weighted maximal cliques on the association graph corresponding to the two given graphs. Experimental results using clinical digitized coronary angiograms are presented.

Diagnostic accuracy of ovarian cyst segmentation in B-mode ultrasound images

NASA Astrophysics Data System (ADS)

Bibicu, Dorin; Moraru, Luminita; Stratulat (Visan), Mirela

2013-11-01

Cystic and polycystic ovary syndrome is an endocrine disorder affecting women in the fertile age. The Moore Neighbor Contour, Watershed Method, Active Contour Models, and a recent method based on Active Contour Model with Selective Binary and Gaussian Filtering Regularized Level Set (ACM&SBGFRLS) techniques were used in this paper to detect the border of the ovarian cyst from echography images. In order to analyze the efficiency of the segmentation an original computer aided software application developed in MATLAB was proposed. The results of the segmentation were compared and evaluated against the reference contour manually delineated by a sonography specialist. Both the accuracy and time complexity of the segmentation tasks are investigated. The Fréchet distance (FD) as a similarity measure between two curves and the area error rate (AER) parameter as the difference between the segmented areas are used as estimators of the segmentation accuracy. In this study, the most efficient methods for the segmentation of the ovarian were analyzed cyst. The research was carried out on a set of 34 ultrasound images of the ovarian cyst.

Real-time implementations of image segmentation algorithms on shared memory multicore architecture: a survey (Conference Presentation)

NASA Astrophysics Data System (ADS)

Akil, Mohamed

2017-05-01

The real-time processing is getting more and more important in many image processing applications. Image segmentation is one of the most fundamental tasks image analysis. As a consequence, many different approaches for image segmentation have been proposed. The watershed transform is a well-known image segmentation tool. The watershed transform is a very data intensive task. To achieve acceleration and obtain real-time processing of watershed algorithms, parallel architectures and programming models for multicore computing have been developed. This paper focuses on the survey of the approaches for parallel implementation of sequential watershed algorithms on multicore general purpose CPUs: homogeneous multicore processor with shared memory. To achieve an efficient parallel implementation, it's necessary to explore different strategies (parallelization/distribution/distributed scheduling) combined with different acceleration and optimization techniques to enhance parallelism. In this paper, we give a comparison of various parallelization of sequential watershed algorithms on shared memory multicore architecture. We analyze the performance measurements of each parallel implementation and the impact of the different sources of overhead on the performance of the parallel implementations. In this comparison study, we also discuss the advantages and disadvantages of the parallel programming models. Thus, we compare the OpenMP (an application programming interface for multi-Processing) with Ptheads (POSIX Threads) to illustrate the impact of each parallel programming model on the performance of the parallel implementations.

The development of a 3D mesoscopic model of metallic foam based on an improved watershed algorithm

NASA Astrophysics Data System (ADS)

Zhang, Jinhua; Zhang, Yadong; Wang, Guikun; Fang, Qin

2018-06-01

The watershed algorithm has been used widely in the x-ray computed tomography (XCT) image segmentation. It provides a transformation defined on a grayscale image and finds the lines that separate adjacent images. However, distortion occurs in developing a mesoscopic model of metallic foam based on XCT image data. The cells are oversegmented at some events when the traditional watershed algorithm is used. The improved watershed algorithm presented in this paper can avoid oversegmentation and is composed of three steps. Firstly, it finds all of the connected cells and identifies the junctions of the corresponding cell walls. Secondly, the image segmentation is conducted to separate the adjacent cells. It generates the lost cell walls between the adjacent cells. Optimization is then performed on the segmentation image. Thirdly, this improved algorithm is validated when it is compared with the image of the metallic foam, which shows that it can avoid the image segmentation distortion. A mesoscopic model of metallic foam is thus formed based on the improved algorithm, and the mesoscopic characteristics of the metallic foam, such as cell size, volume and shape, are identified and analyzed.

Automatic Segmentation of High-Throughput RNAi Fluorescent Cellular Images

PubMed Central

Yan, Pingkum; Zhou, Xiaobo; Shah, Mubarak; Wong, Stephen T. C.

2010-01-01

High-throughput genome-wide RNA interference (RNAi) screening is emerging as an essential tool to assist biologists in understanding complex cellular processes. The large number of images produced in each study make manual analysis intractable; hence, automatic cellular image analysis becomes an urgent need, where segmentation is the first and one of the most important steps. In this paper, a fully automatic method for segmentation of cells from genome-wide RNAi screening images is proposed. Nuclei are first extracted from the DNA channel by using a modified watershed algorithm. Cells are then extracted by modeling the interaction between them as well as combining both gradient and region information in the Actin and Rac channels. A new energy functional is formulated based on a novel interaction model for segmenting tightly clustered cells with significant intensity variance and specific phenotypes. The energy functional is minimized by using a multiphase level set method, which leads to a highly effective cell segmentation method. Promising experimental results demonstrate that automatic segmentation of high-throughput genome-wide multichannel screening can be achieved by using the proposed method, which may also be extended to other multichannel image segmentation problems. PMID:18270043

Occurrence and distribution of fecal indicator bacteria, and physical and chemical indicators of water quality in streams receiving discharge from Dallas/Fort Worth International Airport and vicinity, North-Central Texas, 2008

USGS Publications Warehouse

Harwell, Glenn R.; Mobley, Craig A.

2009-01-01

This report, done by the U.S. Geological Survey in cooperation with Dallas/Fort Worth International (DFW) Airport in 2008, describes the occurrence and distribution of fecal indicator bacteria (fecal coliform and Escherichia [E.] coli), and the physical and chemical indicators of water quality (relative to Texas Surface Water Quality Standards), in streams receiving discharge from DFW Airport and vicinity. At sampling sites in the lower West Fork Trinity River watershed during low-flow conditions, geometric mean E. coli counts for five of the eight West Fork Trinity River watershed sampling sites exceeded the Texas Commission on Environmental Quality E. coli criterion, thus not fully supporting contact recreation. Two of the five sites with geometric means that exceeded the contact recreation criterion are airport discharge sites, which here means that the major fraction of discharge at those sites is from DFW Airport. At sampling sites in the Elm Fork Trinity River watershed during low-flow conditions, geometric mean E. coli counts exceeded the geometric mean contact recreation criterion for seven (four airport, three non-airport) of 13 sampling sites. Under low-flow conditions in the lower West Fork Trinity River watershed, E. coli counts for airport discharge sites were significantly different from (lower than) E. coli counts for non-airport sites. Under low-flow conditions in the Elm Fork Trinity River watershed, there was no significant difference between E. coli counts for airport sites and non-airport sites. During stormflow conditions, fecal indicator bacteria counts at the most downstream (integrator) sites in each watershed were considerably higher than counts at those two sites during low-flow conditions. When stormflow sample counts are included with low-flow sample counts to compute a geometric mean for each site, classification changes from fully supporting to not fully supporting contact recreation on the basis of the geometric mean contact recreation criterion. All water temperature measurements at sampling sites in the lower West Fork Trinity River watershed were less than the maximum criterion for water temperature for the lower West Fork Trinity segment. Of the measurements at sampling sites in the Elm Fork Trinity River watershed, 95 percent were less than the maximum criterion for water temperature for the Elm Fork Trinity River segment. All dissolved oxygen concentrations were greater than the minimum criterion for stream segments classified as exceptional aquatic life use. Nearly all pH measurements were within the pH criterion range for the classified segments in both watersheds, except for those at one airport site. For sampling sites in the lower West Fork Trinity River watershed, all annual average dissolved solids concentrations were less than the maximum criterion for the lower West Fork Trinity segment. For sampling sites in the Elm Fork Trinity River, nine of the 13 sites (six airport, three non-airport) had annual averages that exceeded the maximum criterion for that segment. For ammonia, 23 samples from 12 different sites had concentrations that exceeded the screening level for ammonia. Of these 12 sites, only one non-airport site had more than the required number of exceedances to indicate a screening level concern. Stormflow total suspended solids concentrations were significantly higher than low-flow concentrations at the two integrator sites. For sampling sites in the lower West Fork Trinity River watershed, all annual average chloride concentrations were less than the maximum annual average chloride concentration criterion for that segment. For the 13 sampling sites in the Elm Fork Trinity River watershed, one non-airport site had an annual average concentration that exceeded the maximum annual average chloride concentration criterion for that segment.

Segmentation of bone pixels from EROI Image using clustering method for bone age assessment

NASA Astrophysics Data System (ADS)

Bakthula, Rajitha; Agarwal, Suneeta

2016-03-01

The bone age of a human can be identified using carpal and epiphysis bones ossification, which is limited to teen age. The accurate age estimation depends on best separation of bone pixels and soft tissue pixels in the ROI image. The traditional approaches like canny, sobel, clustering, region growing and watershed can be applied, but these methods requires proper pre-processing and accurate initial seed point estimation to provide accurate results. Therefore this paper proposes new approach to segment the bone from soft tissue and background pixels. First pixels are enhanced using BPE and the edges are identified by HIPI. Later a K-Means clustering is applied for segmentation. The performance of the proposed approach has been evaluated and compared with the existing methods.

Digital data used to relate nutrient inputs to water quality in the Chesapeake Bay watershed

USGS Publications Warehouse

Brakebill, John W.; Preston, Stephen D.

1999-01-01

Digital data sets were compiled by the U. S. Geological Survey (USGS) and used as input for a collection of Spatially Referenced Regressions On Watershed attributes for the Chesapeake Bay region. These regressions relate streamwater loads to nutrient sources and the factors that affect the transport of these nutrients throughout the watershed. A digital segmented network based on watershed boundaries serves as the primary foundation for spatially referencing total nitrogen and total phosphorus source and land-surface characteristic data sets within a Geographic Information System. Digital data sets of atmospheric wet deposition of nitrate, point-source discharge locations, land cover, and agricultural sources such as fertilizer and manure were created and compiled from numerous sources and represent nitrogen and phosphorus inputs. Some land-surface characteristics representing factors that affect the transport of nutrients include land use, land cover, average annual precipitation and temperature, slope, and soil permeability. Nutrient input and land-surface characteristic data sets merged with the segmented watershed network provide the spatial detail by watershed segment required by the models. Nutrient stream loads were estimated for total nitrogen, total phosphorus, nitrate/nitrite, amonium, phosphate, and total suspended soilds at as many as 109 sites within the Chesapeake Bay watershed. The total nitrogen and total phosphorus load estimates are the dependent variables for the regressions and were used for model calibration. Other nutrient-load estimates may be used for calibration in future applications of the models.

Influence of riparian and watershed alterations on sandbars in a Great Plains river

USGS Publications Warehouse

Fischer, Jeffrey M.; Paukert, Craig P.; Daniels, M.L.

2014-01-01

Anthropogenic alterations have caused sandbar habitats in rivers and the biota dependent on them to decline. Restoring large river sandbars may be needed as these habitats are important components of river ecosystems and provide essential habitat to terrestrial and aquatic organisms. We quantified factors within the riparian zone of the Kansas River, USA, and within its tributaries that influenced sandbar size and density using aerial photographs and land use/land cover (LULC) data. We developed, a priori, 16 linear regression models focused on LULC at the local, adjacent upstream river bend, and the segment (18–44 km upstream) scales and used an information theoretic approach to determine what alterations best predicted the size and density of sandbars. Variation in sandbar density was best explained by the LULC within contributing tributaries at the segment scale, which indicated reduced sandbar density with increased forest cover within tributary watersheds. Similarly, LULC within contributing tributary watersheds at the segment scale best explained variation in sandbar size. These models indicated that sandbar size increased with agriculture and forest and decreased with urban cover within tributary watersheds. Our findings suggest that sediment supply and delivery from upstream tributary watersheds may be influential on sandbars within the Kansas River and that preserving natural grassland and reducing woody encroachment within tributary watersheds in Great Plains rivers may help improve sediment delivery to help restore natural river function.

Interactions between natural-occurring landscape conditions and land use influencing the abundance of riverine smallmouth bass, micropterus dolomieu

USGS Publications Warehouse

Brewer, S.K.; Rabeni, C.F.

2011-01-01

This study examined how interactions between natural landscape features and land use influenced the abundance of smallmouth bass, Micropterus dolomieu, in Missouri, USA, streams. Stream segments were placed into one of four groups based on natural-occurring watershed characteristics (soil texture and soil permeability) predicted to relate to smallmouth bass abundance. Within each group, stream segments were assigned forest (n = 3), pasture (n = 3), or urban (n = 3) designations based on the percentages of land use within each watershed. Analyses of variance indicated smallmouth bass densities differed between land use and natural conditions. Decision tree models indicated abundance was highest in forested stream segments and lowest in urban stream segments, regardless of group designation. Land use explained the most variation in decision tree models, but in-channel features of temperature, flow, and sediment also contributed significantly. These results are unique and indicate the importance of natural-occurring watershed conditions in defining the potential of populations and how finer-scale filters interact with land use to further alter population potential. Smallmouth bass has differing vulnerabilities to land-use attributes, and the better the natural watershed conditions are for population success, the more resilient these populations will be when land conversion occurs.

X-ray agricultural product inspection: segmentation and classification

NASA Astrophysics Data System (ADS)

Casasent, David P.; Talukder, Ashit; Lee, Ha-Woon

1997-09-01

Processing of real-time x-ray images of randomly oriented and touching pistachio nuts for product inspection is considered. We describe the image processing used to isolate individual nuts (segmentation). This involves a new watershed transform algorithm. Segmentation results on approximately 3000 x-ray (film) and real time x-ray (linescan) nut images were excellent (greater than 99.9% correct). Initial classification results on film images are presented that indicate that the percentage of infested nuts can be reduced to 1.6% of the crop with only 2% of the good nuts rejected; this performance is much better than present manual methods and other automated classifiers have achieved.

Lung tumor segmentation in PET images using graph cuts.

PubMed

Ballangan, Cherry; Wang, Xiuying; Fulham, Michael; Eberl, Stefan; Feng, David Dagan

2013-03-01

The aim of segmentation of tumor regions in positron emission tomography (PET) is to provide more accurate measurements of tumor size and extension into adjacent structures, than is possible with visual assessment alone and hence improve patient management decisions. We propose a segmentation energy function for the graph cuts technique to improve lung tumor segmentation with PET. Our segmentation energy is based on an analysis of the tumor voxels in PET images combined with a standardized uptake value (SUV) cost function and a monotonic downhill SUV feature. The monotonic downhill feature avoids segmentation leakage into surrounding tissues with similar or higher PET tracer uptake than the tumor and the SUV cost function improves the boundary definition and also addresses situations where the lung tumor is heterogeneous. We evaluated the method in 42 clinical PET volumes from patients with non-small cell lung cancer (NSCLC). Our method improves segmentation and performs better than region growing approaches, the watershed technique, fuzzy-c-means, region-based active contour and tumor customized downhill. Copyright © 2012 Elsevier Ireland Ltd. All rights reserved.

Constraint factor graph cut-based active contour method for automated cellular image segmentation in RNAi screening.

PubMed

Chen, C; Li, H; Zhou, X; Wong, S T C

2008-05-01

Image-based, high throughput genome-wide RNA interference (RNAi) experiments are increasingly carried out to facilitate the understanding of gene functions in intricate biological processes. Automated screening of such experiments generates a large number of images with great variations in image quality, which makes manual analysis unreasonably time-consuming. Therefore, effective techniques for automatic image analysis are urgently needed, in which segmentation is one of the most important steps. This paper proposes a fully automatic method for cells segmentation in genome-wide RNAi screening images. The method consists of two steps: nuclei and cytoplasm segmentation. Nuclei are extracted and labelled to initialize cytoplasm segmentation. Since the quality of RNAi image is rather poor, a novel scale-adaptive steerable filter is designed to enhance the image in order to extract long and thin protrusions on the spiky cells. Then, constraint factor GCBAC method and morphological algorithms are combined to be an integrated method to segment tight clustered cells. Compared with the results obtained by using seeded watershed and the ground truth, that is, manual labelling results by experts in RNAi screening data, our method achieves higher accuracy. Compared with active contour methods, our method consumes much less time. The positive results indicate that the proposed method can be applied in automatic image analysis of multi-channel image screening data.

Comparative study on the performance of textural image features for active contour segmentation.

PubMed

Moraru, Luminita; Moldovanu, Simona

2012-07-01

We present a computerized method for the semi-automatic detection of contours in ultrasound images. The novelty of our study is the introduction of a fast and efficient image function relating to parametric active contour models. This new function is a combination of the gray-level information and first-order statistical features, called standard deviation parameters. In a comprehensive study, the developed algorithm and the efficiency of segmentation were first tested for synthetic images. Tests were also performed on breast and liver ultrasound images. The proposed method was compared with the watershed approach to show its efficiency. The performance of the segmentation was estimated using the area error rate. Using the standard deviation textural feature and a 5×5 kernel, our curve evolution was able to produce results close to the minimal area error rate (namely 8.88% for breast images and 10.82% for liver images). The image resolution was evaluated using the contrast-to-gradient method. The experiments showed promising segmentation results.

Evaluation of aquatic biota in relation to environmental characteristics measured at multiple scales in agricultural streams of the Midwest, 1993-2004

USGS Publications Warehouse

Hambrook Berkman, Julie A.; Scudder, Barbara C.; Lutz, Michelle A.; Harris, Mitchell A.

2010-01-01

This study evaluated the relations between algal, invertebrate, and fish assemblages and physical environmental characteristics of streams at the reach, segment, and watershed scale in agricultural settings in the Midwest. The 86 stream sites selected for study were in predominantly agricultural watersheds sampled as part of the U.S. Geological Survey's National Water-Quality Assessment Program. Species abundance and over 130 biological metrics were used to determine which aspects of the assemblages were most sensitive to change at the three spatial scales. Digital orthophotograph-based riparian land use/land cover was used for analyses of riparian conditions at the reach and segment scales. The percentage area of different land-use/land-cover types was also determined for each watershed. Out of over 230 environmental characteristics examined, those that best explained variation in the biotic assemblages at each spatial scale include the following: 1) reach: bank vegetative cover, fine silty substrate, and open canopy angle; 2) segment: woody vegetation and cropland in the 250-m riparian buffer, and average length of undisturbed buffer; and 3) watershed: land use/land cover (both total forested and row crop), low-permeability soils, slope, drainage area, and latitude. All three biological assemblages, especially fish, correlated more with land use/land cover and other physical characteristics at the watershed scale than at the reach or segment scales. This study identifies biotic measures that can be used to evaluate potential improvements resulting from agricultural best-management practices and other conservation efforts, as well as evaluate potential impairment from urban development or other disturbances.

TMDL RUSLE MODEL

EPA Science Inventory

We developed a simplified spreadsheet modeling approach for characterizing and prioritizing sources of sediment loadings from watersheds in the United States. A simplified modeling approach was developed to evaluate sediment loadings from watersheds and selected land segments. ...

Thermal image analysis using the serpentine method

NASA Astrophysics Data System (ADS)

Koprowski, Robert; Wilczyński, Sławomir

2018-03-01

Thermal imaging is an increasingly widespread alternative to other imaging methods. As a supplementary method in diagnostics, it can be used both statically and with dynamic temperature changes. The paper proposes a new image analysis method that allows for the acquisition of new diagnostic information as well as object segmentation. The proposed serpentine analysis uses known and new methods of image analysis and processing proposed by the authors. Affine transformations of an image and subsequent Fourier analysis provide a new diagnostic quality. The method is fully repeatable and automatic and independent of inter-individual variability in patients. The segmentation results are by 10% better than those obtained from the watershed method and the hybrid segmentation method based on the Canny detector. The first and second harmonics of serpentine analysis enable to determine the type of temperature changes in the region of interest (gradient, number of heat sources etc.). The presented serpentine method provides new quantitative information on thermal imaging and more. Since it allows for image segmentation and designation of contact points of two and more heat sources (local minimum), it can be used to support medical diagnostics in many areas of medicine.

3D segmentations of neuronal nuclei from confocal microscope image stacks

PubMed Central

LaTorre, Antonio; Alonso-Nanclares, Lidia; Muelas, Santiago; Peña, José-María; DeFelipe, Javier

2013-01-01

In this paper, we present an algorithm to create 3D segmentations of neuronal cells from stacks of previously segmented 2D images. The idea behind this proposal is to provide a general method to reconstruct 3D structures from 2D stacks, regardless of how these 2D stacks have been obtained. The algorithm not only reuses the information obtained in the 2D segmentation, but also attempts to correct some typical mistakes made by the 2D segmentation algorithms (for example, under segmentation of tightly-coupled clusters of cells). We have tested our algorithm in a real scenario—the segmentation of the neuronal nuclei in different layers of the rat cerebral cortex. Several representative images from different layers of the cerebral cortex have been considered and several 2D segmentation algorithms have been compared. Furthermore, the algorithm has also been compared with the traditional 3D Watershed algorithm and the results obtained here show better performance in terms of correctly identified neuronal nuclei. PMID:24409123

3D segmentations of neuronal nuclei from confocal microscope image stacks.

PubMed

Latorre, Antonio; Alonso-Nanclares, Lidia; Muelas, Santiago; Peña, José-María; Defelipe, Javier

2013-01-01

In this paper, we present an algorithm to create 3D segmentations of neuronal cells from stacks of previously segmented 2D images. The idea behind this proposal is to provide a general method to reconstruct 3D structures from 2D stacks, regardless of how these 2D stacks have been obtained. The algorithm not only reuses the information obtained in the 2D segmentation, but also attempts to correct some typical mistakes made by the 2D segmentation algorithms (for example, under segmentation of tightly-coupled clusters of cells). We have tested our algorithm in a real scenario-the segmentation of the neuronal nuclei in different layers of the rat cerebral cortex. Several representative images from different layers of the cerebral cortex have been considered and several 2D segmentation algorithms have been compared. Furthermore, the algorithm has also been compared with the traditional 3D Watershed algorithm and the results obtained here show better performance in terms of correctly identified neuronal nuclei.

An automatic method of brain tumor segmentation from MRI volume based on the symmetry of brain and level set method

NASA Astrophysics Data System (ADS)

Li, Xiaobing; Qiu, Tianshuang; Lebonvallet, Stephane; Ruan, Su

2010-02-01

This paper presents a brain tumor segmentation method which automatically segments tumors from human brain MRI image volume. The presented model is based on the symmetry of human brain and level set method. Firstly, the midsagittal plane of an MRI volume is searched, the slices with potential tumor of the volume are checked out according to their symmetries, and an initial boundary of the tumor in the slice, in which the tumor is in the largest size, is determined meanwhile by watershed and morphological algorithms; Secondly, the level set method is applied to the initial boundary to drive the curve evolving and stopping to the appropriate tumor boundary; Lastly, the tumor boundary is projected one by one to its adjacent slices as initial boundaries through the volume for the whole tumor. The experiment results are compared with hand tracking of the expert and show relatively good accordance between both.

Evaluation of prognostic models developed using standardised image features from different PET automated segmentation methods.

PubMed

Parkinson, Craig; Foley, Kieran; Whybra, Philip; Hills, Robert; Roberts, Ashley; Marshall, Chris; Staffurth, John; Spezi, Emiliano

2018-04-11

Prognosis in oesophageal cancer (OC) is poor. The 5-year overall survival (OS) rate is approximately 15%. Personalised medicine is hoped to increase the 5- and 10-year OS rates. Quantitative analysis of PET is gaining substantial interest in prognostic research but requires the accurate definition of the metabolic tumour volume. This study compares prognostic models developed in the same patient cohort using individual PET segmentation algorithms and assesses the impact on patient risk stratification. Consecutive patients (n = 427) with biopsy-proven OC were included in final analysis. All patients were staged with PET/CT between September 2010 and July 2016. Nine automatic PET segmentation methods were studied. All tumour contours were subjectively analysed for accuracy, and segmentation methods with < 90% accuracy were excluded. Standardised image features were calculated, and a series of prognostic models were developed using identical clinical data. The proportion of patients changing risk classification group were calculated. Out of nine PET segmentation methods studied, clustering means (KM2), general clustering means (GCM3), adaptive thresholding (AT) and watershed thresholding (WT) methods were included for analysis. Known clinical prognostic factors (age, treatment and staging) were significant in all of the developed prognostic models. AT and KM2 segmentation methods developed identical prognostic models. Patient risk stratification was dependent on the segmentation method used to develop the prognostic model with up to 73 patients (17.1%) changing risk stratification group. Prognostic models incorporating quantitative image features are dependent on the method used to delineate the primary tumour. This has a subsequent effect on risk stratification, with patients changing groups depending on the image segmentation method used.

Potential Stream Density in Mid-Atlantic U.S. Watersheds

PubMed Central

Elmore, Andrew J.; Julian, Jason P.; Guinn, Steven M.; Fitzpatrick, Matthew C.

2013-01-01

Stream network density exerts a strong influence on ecohydrologic processes in watersheds, yet existing stream maps fail to capture most headwater streams and therefore underestimate stream density. Furthermore, discrepancies between mapped and actual stream length vary between watersheds, confounding efforts to understand the impacts of land use on stream ecosystems. Here we report on research that predicts stream presence from coupled field observations of headwater stream channels and terrain variables that were calculated both locally and as an average across the watershed upstream of any location on the landscape. Our approach used maximum entropy modeling (MaxEnt), a robust method commonly implemented to model species distributions that requires information only on the presence of the entity of interest. In validation, the method correctly predicts the presence of 86% of all 10-m stream segments and errors are low (<1%) for catchments larger than 10 ha. We apply this model to the entire Potomac River watershed (37,800 km2) and several adjacent watersheds to map stream density and compare our results with the National Hydrography Dataset (NHD). We find that NHD underestimates stream density by up to 250%, with errors being greatest in the densely urbanized cities of Washington, DC and Baltimore, MD and in regions where the NHD has never been updated from its original, coarse-grain mapping. This work is the most ambitious attempt yet to map stream networks over a large region and will have lasting implications for modeling and conservation efforts. PMID:24023704

Evaluating Spatial Variability in Sediment and Phosphorus Concentration-Discharge Relationships Using Bayesian Inference and Self-Organizing Maps

NASA Astrophysics Data System (ADS)

Underwood, Kristen L.; Rizzo, Donna M.; Schroth, Andrew W.; Dewoolkar, Mandar M.

2017-12-01

Given the variable biogeochemical, physical, and hydrological processes driving fluvial sediment and nutrient export, the water science and management communities need data-driven methods to identify regions prone to production and transport under variable hydrometeorological conditions. We use Bayesian analysis to segment concentration-discharge linear regression models for total suspended solids (TSS) and particulate and dissolved phosphorus (PP, DP) using 22 years of monitoring data from 18 Lake Champlain watersheds. Bayesian inference was leveraged to estimate segmented regression model parameters and identify threshold position. The identified threshold positions demonstrated a considerable range below and above the median discharge—which has been used previously as the default breakpoint in segmented regression models to discern differences between pre and post-threshold export regimes. We then applied a Self-Organizing Map (SOM), which partitioned the watersheds into clusters of TSS, PP, and DP export regimes using watershed characteristics, as well as Bayesian regression intercepts and slopes. A SOM defined two clusters of high-flux basins, one where PP flux was predominantly episodic and hydrologically driven; and another in which the sediment and nutrient sourcing and mobilization were more bimodal, resulting from both hydrologic processes at post-threshold discharges and reactive processes (e.g., nutrient cycling or lateral/vertical exchanges of fine sediment) at prethreshold discharges. A separate DP SOM defined two high-flux clusters exhibiting a bimodal concentration-discharge response, but driven by differing land use. Our novel framework shows promise as a tool with broad management application that provides insights into landscape drivers of riverine solute and sediment export.

Image processing pipeline for segmentation and material classification based on multispectral high dynamic range polarimetric images.

PubMed

Martínez-Domingo, Miguel Ángel; Valero, Eva M; Hernández-Andrés, Javier; Tominaga, Shoji; Horiuchi, Takahiko; Hirai, Keita

2017-11-27

We propose a method for the capture of high dynamic range (HDR), multispectral (MS), polarimetric (Pol) images of indoor scenes using a liquid crystal tunable filter (LCTF). We have included the adaptive exposure estimation (AEE) method to fully automatize the capturing process. We also propose a pre-processing method which can be applied for the registration of HDR images after they are already built as the result of combining different low dynamic range (LDR) images. This method is applied to ensure a correct alignment of the different polarization HDR images for each spectral band. We have focused our efforts in two main applications: object segmentation and classification into metal and dielectric classes. We have simplified the segmentation using mean shift combined with cluster averaging and region merging techniques. We compare the performance of our segmentation with that of Ncut and Watershed methods. For the classification task, we propose to use information not only in the highlight regions but also in their surrounding area, extracted from the degree of linear polarization (DoLP) maps. We present experimental results which proof that the proposed image processing pipeline outperforms previous techniques developed specifically for MSHDRPol image cubes.

Robust nuclei segmentation in cyto-histopathological images using statistical level set approach with topology preserving constraint

NASA Astrophysics Data System (ADS)

Taheri, Shaghayegh; Fevens, Thomas; Bui, Tien D.

2017-02-01

Computerized assessments for diagnosis or malignancy grading of cyto-histopathological specimens have drawn increased attention in the field of digital pathology. Automatic segmentation of cell nuclei is a fundamental step in such automated systems. Despite considerable research, nuclei segmentation is still a challenging task due noise, nonuniform illumination, and most importantly, in 2D projection images, overlapping and touching nuclei. In most published approaches, nuclei refinement is a post-processing step after segmentation, which usually refers to the task of detaching the aggregated nuclei or merging the over-segmented nuclei. In this work, we present a novel segmentation technique which effectively addresses the problem of individually segmenting touching or overlapping cell nuclei during the segmentation process. The proposed framework is a region-based segmentation method, which consists of three major modules: i) the image is passed through a color deconvolution step to extract the desired stains; ii) then the generalized fast radial symmetry transform is applied to the image followed by non-maxima suppression to specify the initial seed points for nuclei, and their corresponding GFRS ellipses which are interpreted as the initial nuclei borders for segmentation; iii) finally, these nuclei border initial curves are evolved through the use of a statistical level-set approach along with topology preserving criteria for segmentation and separation of nuclei at the same time. The proposed method is evaluated using Hematoxylin and Eosin, and fluorescent stained images, performing qualitative and quantitative analysis, showing that the method outperforms thresholding and watershed segmentation approaches.

Extraction of Capillary Non-perfusion from Fundus Fluorescein Angiogram

NASA Astrophysics Data System (ADS)

Sivaswamy, Jayanthi; Agarwal, Amit; Chawla, Mayank; Rani, Alka; Das, Taraprasad

Capillary Non-Perfusion (CNP) is a condition in diabetic retinopathy where blood ceases to flow to certain parts of the retina, potentially leading to blindness. This paper presents a solution for automatically detecting and segmenting CNP regions from fundus fluorescein angiograms (FFAs). CNPs are modelled as valleys, and a novel technique based on extrema pyramid is presented for trough-based valley detection. The obtained valley points are used to segment the desired CNP regions by employing a variance-based region growing scheme. The proposed algorithm has been tested on 40 images and validated against expert-marked ground truth. In this paper, we present results of testing and validation of our algorithm against ground truth and compare the segmentation performance against two others methods.The performance of the proposed algorithm is presented as a receiver operating characteristic (ROC) curve. The area under this curve is 0.842 and the distance of ROC from the ideal point (0,1) is 0.31. The proposed method for CNP segmentation was found to outperform the watershed [1] and heat-flow [2] based methods.

Spatial Resolution Effect on Forest Road Gradient Calculation and Erosion Modelling

NASA Astrophysics Data System (ADS)

Cao, L.; Elliot, W.

2017-12-01

Road erosion is one of the main sediment sources in a forest watershed and should be properly evaluated. With the help of GIS technology, road topography can be determined and soil loss can be predicted at a watershed scale. As a vector geographical feature, the road gradient should be calculated following road direction rather than hillslope direction. This calculation might be difficult with a coarse (30-m) DEM which only provides the underlying topography information. This study was designed to explore the effect of road segmentation and DEM resolution on the road gradient calculation and erosion prediction at a watershed scale. The Water Erosion Prediction Project (WEPP) model was run on road segments of 9 lengths ranging from 40m to 200m. Road gradient was calculated from three DEM data sets: 1m LiDAR, and 10m and 30m USGS DEMs. The 1m LiDAR DEM calculated gradients were very close to the field observed road gradients, so we assumed the 1m LiDAR DEM predicted the true road gradient. The results revealed that longer road segments skipped detail topographical undulations and resulted in lower road gradients. Coarser DEMs computed steeper road gradients as larger grid cells covered more adjacent areas outside road resulting in larger elevation differences. Field surveyed results also revealed that coarser DEM might result in more gradient deviation in a curved road segment when it passes through a convex or concave slope. As road segment length increased, the gradient difference between three DEMs was reduced. There were no significant differences between road gradients of different segment lengths and DEM resolution when segments were longer than 100m. For long segments, the 10m DEM calculated road gradient was similar to the 1m LiDAR gradient. When evaluating the effects of road segment length, the predicted erosion rate decreased with increasing length when road gradient was less than 3%. In cases where the road gradients exceed 3% and rill erosion dominates, predicted erosion rates exponentially increased with segment length. At the watershed scale, most of the predicted soil loss occurred on segments with gradients ranging from 3% to 9%. Based on the road gradient calculated with the 10-m and 30-m DEMs, soil loss was overestimated when compared to the 1m LiDAR DEM. Both the 10m and 30m DEM result in similar total road soil loss.

Development, calibration, and analysis of a hydrologic and water-quality model of the Delaware Inland Bays watershed

USGS Publications Warehouse

Gutierrez-Magness, Angelica L.; Raffensperger, Jeff P.

2003-01-01

Excessive nutrients and sediment are among the most significant environmental stressors in the Delaware Inland Bays (Rehoboth, Indian River, and Little Assawoman Bays). Sources of nutrients, sediment, and other contaminants within the Inland Bays watershed include point-source discharges from industries and wastewater-treatment plants, runoff and infiltration to ground water from agricultural fields and poultry operations, effluent from on-site wastewater disposal systems, and atmospheric deposition. To determine the most effective restoration methods for the Inland Bays, it is necessary to understand the relative distribution and contribution of each of the possible sources of nutrients, sediment, and other contaminants. A cooperative study involving the Delaware Department of Natural Resources and Environmental Control, the Delaware Geological Survey, and the U.S. Geological Survey was initiated in 2000 to develop a hydrologic and water-quality model of the Delaware Inland Bays watershed that can be used as a water-resources planning and management tool. The model code Hydrological Simulation Program - FORTRAN (HSPF) was used. The 719-square-kilometer watershed was divided into 45 model segments, and the model was calibrated using streamflow and water-quality data for January 1999 through April 2000 from six U.S. Geological Survey stream-gaging stations within the watershed. Calibration for some parameters was accomplished using PEST, a model-independent parameter estimator. Model parameters were adjusted systematically so that the discrepancies between the simulated values and the corresponding observations were minimized. Modeling results indicate that soil and aquifer permeability, ditching, dominant land-use class, and land-use practices affect the amount of runoff, the mechanism or flow path (surface flow, interflow, or base flow), and the loads of sediment and nutrients. In general, the edge-of-stream total suspended solids yields in the Inland Bays watershed are low in comparison to yields reported for the Eastern Shore from the Chesapeake Bay watershed model. The flatness of the terrain and the low annual surface runoff are important factors in determining the amount of detached sediment from the land that is delivered to streams. The highest total suspended solids yields were found in the southern part of the watershed, associated with high total streamflow and a high surface runoff component, and related to soil and aquifer permeability and land use. Nutrient yields from watershed model segments in the southern part of the Inland Bays watershed were the highest of all calibrated segments, due to high runoff and the substantial amount of available organic fertilizer (animal waste), which results in over-application of organic fertilizer to crops. Time series of simulated hourly total nitrogen concentrations and observed instantaneous values indicate a seasonal pattern, with the lowest values occurring during the summer and the highest during the winter months. Total phosphorus and total suspended solids concentrations are somewhat less seasonal. During storm events, total nitrogen concentrations tend to be diluted and total phosphorus concentrations tend to rise sharply. Nitrogen is transported mainly in the aqueous phase and primarily through ground water, whereas phosphorus is strongly associated with sediment, which washes off during precipitation events.

Automatic segmentation of pulmonary fissures in x-ray CT images using anatomic guidance

NASA Astrophysics Data System (ADS)

Ukil, Soumik; Sonka, Milan; Reinhardt, Joseph M.

2006-03-01

The pulmonary lobes are the five distinct anatomic divisions of the human lungs. The physical boundaries between the lobes are called the lobar fissures. Detection of lobar fissure positions in pulmonary X-ray CT images is of increasing interest for the early detection of pathologies, and also for the regional functional analysis of the lungs. We have developed a two-step automatic method for the accurate segmentation of the three pulmonary fissures. In the first step, an approximation of the actual fissure locations is made using a 3-D watershed transform on the distance map of the segmented vasculature. Information from the anatomically labeled human airway tree is used to guide the watershed segmentation. These approximate fissure boundaries are then used to define the region of interest (ROI) for a more exact 3-D graph search to locate the fissures. Within the ROI the fissures are enhanced by computing a ridgeness measure, and this is used as the cost function for the graph search. The fissures are detected as the optimal surface within the graph defined by the cost function, which is computed by transforming the problem to the problem of finding a minimum s-t cut on a derived graph. The accuracy of the lobar borders is assessed by comparing the automatic results to manually traced lobe segments. The mean distance error between manually traced and computer detected left oblique, right oblique and right horizontal fissures is 2.3 +/- 0.8 mm, 2.3 +/- 0.7 mm and 1.0 +/- 0.1 mm, respectively.

Automated seeding-based nuclei segmentation in nonlinear optical microscopy.

PubMed

Medyukhina, Anna; Meyer, Tobias; Heuke, Sandro; Vogler, Nadine; Dietzek, Benjamin; Popp, Jürgen

2013-10-01

Nonlinear optical (NLO) microscopy based, e.g., on coherent anti-Stokes Raman scattering (CARS) or two-photon-excited fluorescence (TPEF) is a fast label-free imaging technique, with a great potential for biomedical applications. However, NLO microscopy as a diagnostic tool is still in its infancy; there is a lack of robust and durable nuclei segmentation methods capable of accurate image processing in cases of variable image contrast, nuclear density, and type of investigated tissue. Nonetheless, such algorithms specifically adapted to NLO microscopy present one prerequisite for the technology to be routinely used, e.g., in pathology or intraoperatively for surgical guidance. In this paper, we compare the applicability of different seeding and boundary detection methods to NLO microscopic images in order to develop an optimal seeding-based approach capable of accurate segmentation of both TPEF and CARS images. Among different methods, the Laplacian of Gaussian filter showed the best accuracy for the seeding of the image, while a modified seeded watershed segmentation was the most accurate in the task of boundary detection. The resulting combination of these methods followed by the verification of the detected nuclei performs high average sensitivity and specificity when applied to various types of NLO microscopy images.

Comparison of contact conditions obtained by direct simulation with statistical analysis for normally distributed isotropic surfaces

NASA Astrophysics Data System (ADS)

Uchidate, M.

2018-09-01

In this study, with the aim of establishing a systematic knowledge on the impact of summit extraction methods and stochastic model selection in rough contact analysis, the contact area ratio (A r /A a ) obtained by statistical contact models with different summit extraction methods was compared with a direct simulation using the boundary element method (BEM). Fifty areal topography datasets with different autocorrelation functions in terms of the power index and correlation length were used for investigation. The non-causal 2D auto-regressive model which can generate datasets with specified parameters was employed in this research. Three summit extraction methods, Nayak’s theory, 8-point analysis and watershed segmentation, were examined. With regard to the stochastic model, Bhushan’s model and BGT (Bush-Gibson-Thomas) model were applied. The values of A r /A a from the stochastic models tended to be smaller than BEM. The discrepancy between the Bhushan’s model with the 8-point analysis and BEM was slightly smaller than Nayak’s theory. The results with the watershed segmentation was similar to those with the 8-point analysis. The impact of the Wolf pruning on the discrepancy between the stochastic analysis and BEM was not very clear. In case of the BGT model which employs surface gradients, good quantitative agreement against BEM was obtained when the Nayak’s bandwidth parameter was large.

A completely automated processing pipeline for lung and lung lobe segmentation and its application to the LIDC-IDRI data base

NASA Astrophysics Data System (ADS)

Blaffert, Thomas; Wiemker, Rafael; Barschdorf, Hans; Kabus, Sven; Klinder, Tobias; Lorenz, Cristian; Schadewaldt, Nicole; Dharaiya, Ekta

2010-03-01

Automated segmentation of lung lobes in thoracic CT images has relevance for various diagnostic purposes like localization of tumors within the lung or quantification of emphysema. Since emphysema is a known risk factor for lung cancer, both purposes are even related to each other. The main steps of the segmentation pipeline described in this paper are the lung detector and the lung segmentation based on a watershed algorithm, and the lung lobe segmentation based on mesh model adaptation. The segmentation procedure was applied to data sets of the data base of the Image Database Resource Initiative (IDRI) that currently contains over 500 thoracic CT scans with delineated lung nodule annotations. We visually assessed the reliability of the single segmentation steps, with a success rate of 98% for the lung detection and 90% for lung delineation. For about 20% of the cases we found the lobe segmentation not to be anatomically plausible. A modeling confidence measure is introduced that gives a quantitative indication of the segmentation quality. For a demonstration of the segmentation method we studied the correlation between emphysema score and malignancy on a per-lobe basis.

Geomorphic characteristics and classification of Duluth-area streams, Minnesota

USGS Publications Warehouse

Fitzpatrick, Faith A.; Peppler, Marie C.; DePhilip, Michele M.; Lee, Kathy E.

2006-01-01

In 2003 and 2004, a geomorphic assessment of streams in 20 watersheds in the Duluth, Minn., area was conducted to identify and summarize geomorphic characteristics, processes, disturbance mechanisms, and potential responses to disturbance. Methods used to assess the streams included watershed characterization, descriptions of segment slopes and valley types, historical aerial photograph interpretation, and rapid field assessments and intensive field surveys of stream reaches. Geomorphic conditions were summarized into a segment-scale classification with 15 categories mainly based on drainage-network position and slope, and, secondarily, based on geologic setting, valley type, and dominant geomorphic processes. Main causes of geomorphic disturbance included historical logging and agriculture, and ongoing urban development, human-caused channel alterations, road and storm sewer drainage, ditching, hiking trails, and gravel pits or quarries. Geomorphic responses to these disturbances are dependent on a combination of drainage-network position, slope, and geologic setting. Geologic setting is related to drainage-network position because the geologic deposits parallel the Lake Superior shoreline. Headwater streams in large watersheds flow over glacial deposits above altitudes of about 1,200 feet (ft). Headwater tributaries and upper main stems have ditch-like channels with gentle slopes and no valleys. Urban development and road drainage cause increased runoff and flood peaks in these segments resulting in channel widening. Below about 1,200 ft, main-stem segments generally are affected by bedrock type and structure and have steep slopes and confined or entrenched valleys. Increases in flood peaks do not cause incision or widening in the bedrock-controlled valleys; instead, the flow and scour areas are expanded. Feeder tributaries to these main stems have steep, confined valleys and may be sources for sediment from urban areas, road runoff, or storm sewer outfalls. Main-stem segments near the glacial deposits/surficial bedrock contact (1,000–1,200 ft) have the most potential for response to disturbance because they tend to have narrow valleys with sandy glacial lakeshore deposits and moderate slopes. Increases in flood peaks (from upstream increases in runoff) increase the potential for landslides and mass wasting from valley sides as well as channel widening.

Semi-automatic knee cartilage segmentation

NASA Astrophysics Data System (ADS)

Dam, Erik B.; Folkesson, Jenny; Pettersen, Paola C.; Christiansen, Claus

2006-03-01

Osteo-Arthritis (OA) is a very common age-related cause of pain and reduced range of motion. A central effect of OA is wear-down of the articular cartilage that otherwise ensures smooth joint motion. Quantification of the cartilage breakdown is central in monitoring disease progression and therefore cartilage segmentation is required. Recent advances allow automatic cartilage segmentation with high accuracy in most cases. However, the automatic methods still fail in some problematic cases. For clinical studies, even if a few failing cases will be averaged out in the overall results, this reduces the mean accuracy and precision and thereby necessitates larger/longer studies. Since the severe OA cases are often most problematic for the automatic methods, there is even a risk that the quantification will introduce a bias in the results. Therefore, interactive inspection and correction of these problematic cases is desirable. For diagnosis on individuals, this is even more crucial since the diagnosis will otherwise simply fail. We introduce and evaluate a semi-automatic cartilage segmentation method combining an automatic pre-segmentation with an interactive step that allows inspection and correction. The automatic step consists of voxel classification based on supervised learning. The interactive step combines a watershed transformation of the original scan with the posterior probability map from the classification step at sub-voxel precision. We evaluate the method for the task of segmenting the tibial cartilage sheet from low-field magnetic resonance imaging (MRI) of knees. The evaluation shows that the combined method allows accurate and highly reproducible correction of the segmentation of even the worst cases in approximately ten minutes of interaction.

Hot spot detection, segmentation, and identification in PET images

NASA Astrophysics Data System (ADS)

Blaffert, Thomas; Meetz, Kirsten

2006-03-01

Positron Emission Tomography (PET) images provide functional or metabolic information from areas of high concentration of [18F]fluorodeoxyglucose (FDG) tracer, the "hot spots". These hot spots can be easily detected by the eye, but delineation and size determination required e.g. for diagnosis and staging of cancer is a tedious task that demands for automation. The approach for such an automated hot spot segmentation described in this paper comprises three steps: A region of interest detection by the watershed transform, a heart identification by an evaluation of scan lines, and the final segmentation of hot spot areas by a local threshold. The region of interest detection is the essential step, since it localizes the hot spot identification and the final segmentation. The heart identification is an example of how to differentiate between hot spots. Finally, we demonstrate the combination of PET and CT data. Our method is applicable to other techniques like SPECT.

Automatic segmentation and classification of mycobacterium tuberculosis with conventional light microscopy

NASA Astrophysics Data System (ADS)

Xu, Chao; Zhou, Dongxiang; Zhai, Yongping; Liu, Yunhui

2015-12-01

This paper realizes the automatic segmentation and classification of Mycobacterium tuberculosis with conventional light microscopy. First, the candidate bacillus objects are segmented by the marker-based watershed transform. The markers are obtained by an adaptive threshold segmentation based on the adaptive scale Gaussian filter. The scale of the Gaussian filter is determined according to the color model of the bacillus objects. Then the candidate objects are extracted integrally after region merging and contaminations elimination. Second, the shape features of the bacillus objects are characterized by the Hu moments, compactness, eccentricity, and roughness, which are used to classify the single, touching and non-bacillus objects. We evaluated the logistic regression, random forest, and intersection kernel support vector machines classifiers in classifying the bacillus objects respectively. Experimental results demonstrate that the proposed method yields to high robustness and accuracy. The logistic regression classifier performs best with an accuracy of 91.68%.

Concentrations, loads, and yields of total nitrogen and total phosphorus in the Barnegat Bay-Little Egg Harbor watershed, New Jersey, 1989-2011, at multiple spatial scales

USGS Publications Warehouse

Baker, Ronald J.; Wieben, Christine M.; Lathrop, Richard G.; Nicholson, Robert S.

2014-01-01

Concentrations, loads, and yields of nutrients (total nitrogen and total phosphorus) were calculated for the Barnegat Bay-Little Egg Harbor (BB-LEH) watershed for 1989–2011 at annual and seasonal (growing and nongrowing) time scales. Concentrations, loads, and yields were calculated at three spatial scales: for each of the 81 subbasins specified by 14-digit hydrologic unit codes (HUC-14s); for each of the three BB-LEH watershed segments, which coincide with segmentation of the BB-LEH estuary; and for the entire BB-LEH watershed. Base-flow and runoff values were calculated separately and were combined to provide total values. Available surface-water-quality data for all streams in the BB-LEH watershed for 1980–2011 were compiled from existing datasets and quality assured. Precipitation and streamflow data were used to distinguish between water-quality samples that were collected during base-flow conditions and those that were collected during runoff conditions. Base-flow separation of hydrographs of six streams in the BB-LEH watershed indicated that base flow accounts for about 72 to 94 percent of total flow in streams in the watershed. Base-flow mean concentrations (BMCs) of total nitrogen (TN) and total phosphorus (TP) for each HUC-14 subbasin were calculated from relations between land use and measured base-flow concentrations. These relations were developed from multiple linear regression models determined from water-quality data collected at sampling stations in the BB-LEH watershed under base-flow conditions and land-use percentages in the contributing drainage basins. The total watershed base-flow volume was estimated for each year and season from continuous streamflow records for 1989–2011 and relations between precipitation and streamflow during base-flow conditions. For each year and season, the base-flow load and yield were then calculated for each HUC-14 subbasin from the BMCs, total base-flow volume, and drainage area. The watershed-loading application PLOAD was used to calculate runoff concentrations, loads, and yields of TN and TP at the HUC-14 scale. Flow-weighted event-mean concentrations (EMCs) for runoff were developed for each major land-use type in the watershed using storm sampling data from four streams in the BB-LEH watershed and three streams outside the watershed. The EMCs were developed separately for the growing and nongrowing seasons, and were typically greater during the growing season. The EMCs, along with annual and seasonal precipitation amounts and percent imperviousness associated with land-use types, were used as inputs to PLOAD to calculate annual and seasonal runoff concentrations, loads, and yields at the HUC-14 scale. Over the period of study (1989–2011), total surface-water loads (base flow plus runoff) for the entire BB-LEH watershed for TN ranged from about 455,000 kilograms (kg) as N (1995) to 857,000 kg as N (2010). For TP, total loads for the watershed ranged from about 17,000 (1995) to 32,000 kg as P (2010). On average, the north segment accounted for about 66 percent of the annual TN load and 63 percent of the annual TP load, and the central and south segments each accounted for less than 20 percent of the nutrient loads. Loads and yields were strongly associated with precipitation patterns, ensuing hydrologic conditions, and land use. HUC-14 subbasins with the highest yields of nutrients are concentrated in the northern part of the watershed, and have the highest percentages of urban or agricultural land use. Subbasins with the lowest TN and TP yields are dominated by forest cover. Percentages of turf (lawn) cover and nonturf cover were estimated for the watershed. Of the developed land in the watershed, nearly one quarter (24.9 percent) was mapped as turf cover. Because there is a strong relation between percent turf and percent developed land, percent turf in the watershed typically increases with percent development, and the amount of development can be considered a reasonable predictor of the amount of turf cover in the watershed. In the BB-LEH watershed, calculated concentrations of TN and TP were greater for developed–turf areas than for developed–nonturf areas, which, in turn, were greater than those for undeveloped areas.

USUING STREAM MORPHOLOGY CLASSIFICATION TO MANAGE ECOLOGICAL RISKS FROM LAND USE CHANGES IN THE LMR WATERSHED

EPA Science Inventory

Changes in the amount and types of land use in a watershed can destabilize stream channel structure, increase sediment loading and degrade in-stream habitat. Stream classification systems (e.g. Rosgen) may be useful for determining the susceptibility of stream channel segments t...

USING STREAM MORPHOLOGY CLASSIFICATION TO MANAGE ECOLOGICAL RISKS FROM LAND USE CHANGES IN THE LMR WATERSHED

EPA Science Inventory

Changes in the amount and types of land use in a watershed can destabilize stream channel structure, increase sediment loading and degrade in-stream habitat. Stream classification systems (e.g. Rosgen) may be useful for determining the susceptibility of stream channel segments t...

Increased variability of watershed areas in patients with high-grade carotid stenosis.

PubMed

Kaczmarz, Stephan; Griese, Vanessa; Preibisch, Christine; Kallmayer, Michael; Helle, Michael; Wustrow, Isabel; Petersen, Esben Thade; Eckstein, Hans-Henning; Zimmer, Claus; Sorg, Christian; Göttler, Jens

2018-03-01

Watershed areas (WSAs) of the brain are most susceptible to acute hypoperfusion due to their peripheral location between vascular territories. Additionally, chronic WSA-related vascular processes underlie cognitive decline especially in patients with cerebral hemodynamic compromise. Despite of high relevance for both clinical diagnostics and research, individual in vivo WSA definition is fairly limited to date. Thus, this study proposes a standardized segmentation approach to delineate individual WSAs by use of time-to-peak (TTP) maps and investigates spatial variability of individual WSAs. We defined individual watershed masks based on relative TTP increases in 30 healthy elderly persons and 28 patients with unilateral, high-grade carotid stenosis, being at risk for watershed-related hemodynamic impairment. Determined WSA location was confirmed by an arterial transit time atlas and individual super-selective arterial spin labeling. We compared spatial variability of WSA probability maps between groups and assessed TTP differences between hemispheres in individual and group-average watershed locations. Patients showed significantly higher spatial variability of WSAs than healthy controls. Perfusion on the side of the stenosis was delayed within individual watershed masks as compared to a watershed template derived from controls, being independent from the grade of the stenosis and collateralization status of the circle of Willis. Results demonstrate feasibility of individual WSA delineation by TTP maps in healthy elderly and carotid stenosis patients. Data indicate necessity of individual segmentation approaches especially in patients with hemodynamic compromise to detect critical regions of impaired hemodynamics.

Automatic 3D segmentation of multiphoton images: a key step for the quantification of human skin.

PubMed

Decencière, Etienne; Tancrède-Bohin, Emmanuelle; Dokládal, Petr; Koudoro, Serge; Pena, Ana-Maria; Baldeweck, Thérèse

2013-05-01

Multiphoton microscopy has emerged in the past decade as a useful noninvasive imaging technique for in vivo human skin characterization. However, it has not been used until now in evaluation clinical trials, mainly because of the lack of specific image processing tools that would allow the investigator to extract pertinent quantitative three-dimensional (3D) information from the different skin components. We propose a 3D automatic segmentation method of multiphoton images which is a key step for epidermis and dermis quantification. This method, based on the morphological watershed and graph cuts algorithms, takes into account the real shape of the skin surface and of the dermal-epidermal junction, and allows separating in 3D the epidermis and the superficial dermis. The automatic segmentation method and the associated quantitative measurements have been developed and validated on a clinical database designed for aging characterization. The segmentation achieves its goals for epidermis-dermis separation and allows quantitative measurements inside the different skin compartments with sufficient relevance. This study shows that multiphoton microscopy associated with specific image processing tools provides access to new quantitative measurements on the various skin components. The proposed 3D automatic segmentation method will contribute to build a powerful tool for characterizing human skin condition. To our knowledge, this is the first 3D approach to the segmentation and quantification of these original images. © 2013 John Wiley & Sons A/S. Published by Blackwell Publishing Ltd.

Carbon sequestration associated to the land-use and land-cover changes in the forestry sector in Southern Brazil

NASA Astrophysics Data System (ADS)

Ronquim, Carlos C.; Silva, Ramon F. B.; de Figueiredo, Eduardo B.; Bordonal, Ricardo O.; de C. Teixeira, Antônio H.; Cochasrk, Thomas C. D.; Leivas, Janice F.

2016-10-01

We studied the Paraíba do Sul river watershed, São Paulo state (PSWSP), Southeastern Brazil, in order to assess the land use and cover (LULC) and their implications to the amount of carbon (C) stored in the forest cover between the years 1985 and 2015. The region covers an area of 1,395,975 ha. We used images made by the Operational Land Imager (OLI) sensor (OLI/Landsat-8) to produce mappings, and image segmentation techniques to produce vectors with homogeneous characteristics. The training samples and the samples used for classification and validation were collected from the segmented image. To quantify the C stocked in aboveground live biomass (AGLB), we used an indirect method and applied literature-based reference values. The recovery of 205,690 ha of a secondary Native Forest (NF) after 1985 sequestered 9.7 Tg (Teragram) of C. Considering the whole NF area (455,232 ha), the amount of C accumulated along the whole watershed was 35.5 Tg, and the whole Eucalyptus crop (EU) area (113,600 ha) sequestered 4.4 Tg of C. Thus, the total amount of C sequestered in the whole watershed (NF + EU) was 39.9 Tg of C or 145.6 Tg of CO2, and the NF areas were responsible for the largest C stock at the watershed (89%). Therefore, the increase of the NF cover contributes positively to the reduction of CO2 concentration in the atmosphere, and Reducing Emissions from Deforestation and Forest Degradation (REDD+) may become one of the most promising compensation mechanisms for the farmers who increased forest cover at their farms.

Periconal arterial anastomotic circle and posterior lumbosacral watershed zone of the spinal cord.

PubMed

Gailloud, Philippe; Gregg, Lydia; Galan, Peter; Becker, Daniel; Pardo, Carlos

2015-11-01

The existence of spinal cord watershed territories was suggested in the 1950s. Segmental infarcts within the junctional territories of adjacent radiculomedullary contributors and isolated spinal gray matter ischemia constitute two well-recognized types of watershed injury. This report describes the existence of another watershed territory related to the particular configuration of the spinal vasculature in the region of the conus medullaris. The anatomical bases underlying the concept of a posterior lumbosacral watershed zone are demonstrated with angiographic images obtained in a 16-year-old child. The clinical importance of this watershed zone is illustrated with MRI and angiographic data of three patients with a conus medullaris infarction. In all three cases of spinal ischemia an intersegmental artery providing a significant radiculomedullary contribution for the lower cord was compromised by a compressive mechanism responsible for decreased spinal cord perfusion (diaphragmatic crus syndrome in two cases, disk herniation in one). The ischemic injury, located at the junction of the anterior and posterior spinal artery territories along the dorsal aspect of the conus medullaris, was consistent with a watershed mechanism. This zone is at risk because of the caudocranial direction of flow within the most caudal segment of the posterior spinal arterial network which, from a functional standpoint, depends on the anterior spinal artery. The posterior thoracolumbar watershed zone of the spinal cord represents an area at increased risk of ischemic injury, particularly in the context of partial flow impairment related to arterial compression mechanisms. Published by the BMJ Publishing Group Limited. For permission to use (where not already granted under a licence) please go to http://group.bmj.com/group/rights-licensing/permissions.

Watershed Hepatocellular Carcinomas: The Risk of Incomplete Response following Transhepatic Arterial Chemoembolization.

PubMed

Kothary, Nishita; Takehana, Chris; Mueller, Kerstin; Sullivan, Patrick; Tahvildari, Ali; Sidhar, Vishal; Rosenberg, Jarrett; Louie, John D; Sze, Daniel Y

2015-08-01

Hepatocellular carcinomas (HCCs) bridging two or more Couinaud-Bismuth segments of the liver ("watershed tumors") can recruit multiple segmental arteries. The primary hypothesis of this study was that fewer watershed tumors show complete response (CR) after chemoembolization, with shorter time to local recurrence. Secondary analysis on the impact on transplantation eligibility in the presence of progressive disease was also performed. A total of 155 transplantation-eligible patients whose HCC met Milan criteria (watershed, n = 83; nonwatershed, n = 72) and was treated with chemoembolization were included. Cone-beam computed tomography (CT) was used for guidance and for confirmation of circumferential uptake. Local response to chemoembolization per modified Response Evaluation Criteria In Solid Tumors and local disease-free survival (DFS) for the index tumor were calculated. Differences were assessed by univariate and multivariate analyses. CR after a single of chemoembolization was observed in 55.4% of watershed tumors and in 72.2% of nonwatershed tumors (P = .045). Estimated DFS intervals were 151 days (95% confidence interval [CI], 93-245 d) and 336 days (95% CI, 231-747 d; P = .040) in the watershed and nonwatershed groups, respectively. Worse DFS was observed with a Model for End-Stage Liver Disease score > 20 (P = .0001), higher Child-Pugh-Turcotte score (P = .049), and watershed location (P = .040). Waiting list drop-off rates were statistically similar between groups. Hepatocellular carcinomas located in the watershed region of the liver have a poorer response to chemoembolization than those located elsewhere. These tumors are associated with worse DFS and require additional treatments to maintain transplantation eligibility per Milan criteria. Cone-beam CT can identify crossover supply and confirm complete geographic drug uptake, possibly reducing (but not eliminating) the risk of incomplete response. Copyright © 2015 SIR. Published by Elsevier Inc. All rights reserved.

Image segmentation for biomedical applications based on alternating sequential filtering and watershed transformation

NASA Astrophysics Data System (ADS)

Gorpas, D.; Yova, D.

2009-07-01

One of the major challenges in biomedical imaging is the extraction of quantified information from the acquired images. Light and tissue interaction leads to the acquisition of images that present inconsistent intensity profiles and thus the accurate identification of the regions of interest is a rather complicated process. On the other hand, the complex geometries and the tangent objects that very often are present in the acquired images, lead to either false detections or to the merging, shrinkage or expansion of the regions of interest. In this paper an algorithm, which is based on alternating sequential filtering and watershed transformation, is proposed for the segmentation of biomedical images. This algorithm has been tested over two applications, each one based on different acquisition system, and the results illustrate its accuracy in segmenting the regions of interest.

Automatic segmentation and supervised learning-based selection of nuclei in cancer tissue images.

PubMed

Nandy, Kaustav; Gudla, Prabhakar R; Amundsen, Ryan; Meaburn, Karen J; Misteli, Tom; Lockett, Stephen J

2012-09-01

Analysis of preferential localization of certain genes within the cell nuclei is emerging as a new technique for the diagnosis of breast cancer. Quantitation requires accurate segmentation of 100-200 cell nuclei in each tissue section to draw a statistically significant result. Thus, for large-scale analysis, manual processing is too time consuming and subjective. Fortuitously, acquired images generally contain many more nuclei than are needed for analysis. Therefore, we developed an integrated workflow that selects, following automatic segmentation, a subpopulation of accurately delineated nuclei for positioning of fluorescence in situ hybridization-labeled genes of interest. Segmentation was performed by a multistage watershed-based algorithm and screening by an artificial neural network-based pattern recognition engine. The performance of the workflow was quantified in terms of the fraction of automatically selected nuclei that were visually confirmed as well segmented and by the boundary accuracy of the well-segmented nuclei relative to a 2D dynamic programming-based reference segmentation method. Application of the method was demonstrated for discriminating normal and cancerous breast tissue sections based on the differential positioning of the HES5 gene. Automatic results agreed with manual analysis in 11 out of 14 cancers, all four normal cases, and all five noncancerous breast disease cases, thus showing the accuracy and robustness of the proposed approach. Published 2012 Wiley Periodicals, Inc.

Factors affecting the occurrence of saugers in small, high-elevation rivers near the western edge of the species' natural distribution

USGS Publications Warehouse

Amadio, C.J.; Hubert, W.A.; Johnson, Kevin; Oberlie, D.; Dufek, D.

2005-01-01

Factors affecting the occurrence of saugers Sander canadensis were studied throughout the Wind River basin, a high-elevation watershed (> 1,440 m above mean sea level) on the western periphery of the species' natural distribution in central Wyoming. Adult saugers appeared to have a contiguous distribution over 170 km of streams among four rivers in the watershed. The upstream boundaries of sauger distribution were influenced by summer water temperatures and channel slopes in two rivers and by water diversion dams that created barriers to upstream movement in the other two rivers. Models that included summer water temperature, maximum water depth, habitat type (pool or run), dominant substrate, and alkalinity accounted for the variation in sauger occurrence across the watershed within the areas of sauger distribution. Water temperature was the most important basin-scale habitat feature associated with sauger occurrence, and maximum depth was the most important site-specific habitat feature. Saugers were found in a larger proportion of pools than runs in all segments of the watershed and occurred almost exclusively in pools in upstream segments of the watershed. Suitable summer water temperatures and deep, low-velocity habitat were available to support saugers over a large portion of the Wind River watershed. Future management of saugers in the Wind River watershed, as well as in other small river systems within the species' native range, should involve (1) preserving natural fluvial processes to maintain the summer water temperatures and physical habitat features needed by saugers and (2) assuring that barriers to movement do not reduce upstream boundaries of populations.

Ecological and water quality impairment resulting from the New Idria Mercury Mine and natural sources in the San Carlos and Silver Creek watersheds, central California

NASA Astrophysics Data System (ADS)

Rytuba, J. J.; Hothem, R.; Goldstein, D.; Brussee, B.

2011-12-01

The New Idria Mercury Mine in central California is the second largest mercury (Hg) deposit in North America and has been proposed as a US EPA Superfund Site based on ecological impairment to the San Carlos and Silver Creek watersheds. Water, sediment, and biota were sampled in San Carlos Creek in the mine area and downstream for 25 km into the watershed termed Silver Creek. Release of acid rock drainage (ARD) and erosion of mine tailings have impacted the watershed during 120 years of mining and since the mine was closed in 1972. The watershed can be divided into three segments based on water and sediment composition, Hg sources and concentrations, and biodiversity of aquatic invertebrates. Creek waters in segment no. 1 above the mine area consist of Mg-Ca-CO3 meteoric water with pH 8.73. Hg concentrations are elevated in both sediment (100μg/g), and in waters (60 ng/L) because of erosion of Hg mine tailings in the upper part of the watershed. Invertebrate biodiversity is the highest of the sites sampled in the watershed, with seven families (six orders) of aquatic invertebrates collected and six other families observed. In the mine area isotopically heavy ARD (pH 2.7) with high levels of Fe(II), SO4, and total Hg (HgT: 76.7 ng/L) enters and mixes with meteoric creek water, constituting from 10-15% of the water in the 10-km long second creek segment downstream from the mine. Oxidation of Fe(II) from ARD results in precipitation of FeOOH which is transported and deposited as an Fe precipitate that has high Hg and MMeHg concentration (Hg: 15.7-79 μg/g, MMeHg: 0.31 - 1.06 ng/g). Concentrations of HgT are uniformly high (1530-2890 ng/L) with particulate Hg predominant. MMeHg ranges from 0.21-0.99 ng/L. In the area just downstream from the ARD source, biodiversity of invertebrates was low, with only one taxa (water striders) available in sufficient numbers and mass (> 1 g)_to be sampled. Biodiversity further downstream was also low, with only up to 2 families present at each site. In the third segment of the watershed, from 10 to 25 km downstream, water chemistry changes due to an input of isotopically heavy connate groundwater with elevated SO4, Cl, CO3, Ba, Ca, Ti, and Hg. HgT concentrations decrease systematically downstream from 680 to 20 ng/L. In the dry season, phytoplankton blooms in this segment of the creek result in accumulation of biogenic sediment up to 0.25 m thick that is composed of diatoms and chemically precipitated CaCO3. The tan surface layer consists of living diatoms. Below it is a black sediment composed of diatom fragments and micron to submicron size grains of FeS, HgS, and barite. Phytoplankton has high Hg and MMeHg bioaccumulation factors which results in high levels of Hg in the biogenic sediment. The expired diatoms release Hg to the pore waters of the sediment that reacts with sulfide generated by sulfate reducing bacteria and is precipitated as HgS. The Hg enriched biogenic sediment (4.5-14.4 μg/g) is a natural source of HgS to the watershed. In this creek segment, biodiversity is variable depending on riparian and in-stream habitat. The number of aquatic invertebrates present in sufficient numbers and mass for collection and analysis ranged from 2 to 7.

A tree canopy height delineation method based on Morphological Reconstruction—Open Crown Decomposition

NASA Astrophysics Data System (ADS)

Liu, Q.; Jing, L.; Li, Y.; Tang, Y.; Li, H.; Lin, Q.

2016-04-01

For the purpose of forest management, high resolution LIDAR and optical remote sensing imageries are used for treetop detection, tree crown delineation, and classification. The purpose of this study is to develop a self-adjusted dominant scales calculation method and a new crown horizontal cutting method of tree canopy height model (CHM) to detect and delineate tree crowns from LIDAR, under the hypothesis that a treetop is radiometric or altitudinal maximum and tree crowns consist of multi-scale branches. The major concept of the method is to develop an automatic selecting strategy of feature scale on CHM, and a multi-scale morphological reconstruction-open crown decomposition (MRCD) to get morphological multi-scale features of CHM by: cutting CHM from treetop to the ground; analysing and refining the dominant multiple scales with differential horizontal profiles to get treetops; segmenting LiDAR CHM using watershed a segmentation approach marked with MRCD treetops. This method has solved the problems of false detection of CHM side-surface extracted by the traditional morphological opening canopy segment (MOCS) method. The novel MRCD delineates more accurate and quantitative multi-scale features of CHM, and enables more accurate detection and segmentation of treetops and crown. Besides, the MRCD method can also be extended to high optical remote sensing tree crown extraction. In an experiment on aerial LiDAR CHM of a forest of multi-scale tree crowns, the proposed method yielded high-quality tree crown maps.

INNOVATIVE APPROACHES TO IMPROVE THE TMDL PROCESS: USING ALTERNATIVE WATERSHED SAMPLING DESIGNS TO MEASURE AND CLASSIFY EXPOSURE TO NATURAL AND ANTHROPOGENIC DETERMINANTS OF ECOLOGICAL CONDITION.

EPA Science Inventory

As a means to protect the Nation's rivers and streams, states have adopted biocriteria, a narrative or numeric standard for the biological condition of streams. When stream segments or whole watersheds do not meet a state's biocriteria, then that water body is considered impaired...

Iterative h-minima-based marker-controlled watershed for cell nucleus segmentation.

PubMed

Koyuncu, Can Fahrettin; Akhan, Ece; Ersahin, Tulin; Cetin-Atalay, Rengul; Gunduz-Demir, Cigdem

2016-04-01

Automated microscopy imaging systems facilitate high-throughput screening in molecular cellular biology research. The first step of these systems is cell nucleus segmentation, which has a great impact on the success of the overall system. The marker-controlled watershed is a technique commonly used by the previous studies for nucleus segmentation. These studies define their markers finding regional minima on the intensity/gradient and/or distance transform maps. They typically use the h-minima transform beforehand to suppress noise on these maps. The selection of the h value is critical; unnecessarily small values do not sufficiently suppress the noise, resulting in false and oversegmented markers, and unnecessarily large ones suppress too many pixels, causing missing and undersegmented markers. Because cell nuclei show different characteristics within an image, the same h value may not work to define correct markers for all the nuclei. To address this issue, in this work, we propose a new watershed algorithm that iteratively identifies its markers, considering a set of different h values. In each iteration, the proposed algorithm defines a set of candidates using a particular h value and selects the markers from those candidates provided that they fulfill the size requirement. Working with widefield fluorescence microscopy images, our experiments reveal that the use of multiple h values in our iterative algorithm leads to better segmentation results, compared to its counterparts. © 2016 International Society for Advancement of Cytometry. © 2016 International Society for Advancement of Cytometry.

The segmentation of bones in pelvic CT images based on extraction of key frames.

PubMed

Yu, Hui; Wang, Haijun; Shi, Yao; Xu, Ke; Yu, Xuyao; Cao, Yuzhen

2018-05-22

Bone segmentation is important in computed tomography (CT) imaging of the pelvis, which assists physicians in the early diagnosis of pelvic injury, in planning operations, and in evaluating the effects of surgical treatment. This study developed a new algorithm for the accurate, fast, and efficient segmentation of the pelvis. The proposed method consists of two main parts: the extraction of key frames and the segmentation of pelvic CT images. Key frames were extracted based on pixel difference, mutual information and normalized correlation coefficient. In the pelvis segmentation phase, skeleton extraction from CT images and a marker-based watershed algorithm were combined to segment the pelvis. To meet the requirements of clinical application, physician's judgment is needed. Therefore the proposed methodology is semi-automated. In this paper, 5 sets of CT data were used to test the overlapping area, and 15 CT images were used to determine the average deviation distance. The average overlapping area of the 5 sets was greater than 94%, and the minimum average deviation distance was approximately 0.58 pixels. In addition, the key frame extraction efficiency and the running time of the proposed method were evaluated on 20 sets of CT data. For each set, approximately 13% of the images were selected as key frames, and the average processing time was approximately 2 min (the time for manual marking was not included). The proposed method is able to achieve accurate, fast, and efficient segmentation of pelvic CT image sequences. Segmentation results not only provide an important reference for early diagnosis and decisions regarding surgical procedures, they also offer more accurate data for medical image registration, recognition and 3D reconstruction.

3D marker-controlled watershed for kidney segmentation in clinical CT exams.

PubMed

Wieclawek, Wojciech

2018-02-27

Image segmentation is an essential and non trivial task in computer vision and medical image analysis. Computed tomography (CT) is one of the most accessible medical examination techniques to visualize the interior of a patient's body. Among different computer-aided diagnostic systems, the applications dedicated to kidney segmentation represent a relatively small group. In addition, literature solutions are verified on relatively small databases. The goal of this research is to develop a novel algorithm for fully automated kidney segmentation. This approach is designed for large database analysis including both physiological and pathological cases. This study presents a 3D marker-controlled watershed transform developed and employed for fully automated CT kidney segmentation. The original and the most complex step in the current proposition is an automatic generation of 3D marker images. The final kidney segmentation step is an analysis of the labelled image obtained from marker-controlled watershed transform. It consists of morphological operations and shape analysis. The implementation is conducted in a MATLAB environment, Version 2017a, using i.a. Image Processing Toolbox. 170 clinical CT abdominal studies have been subjected to the analysis. The dataset includes normal as well as various pathological cases (agenesis, renal cysts, tumors, renal cell carcinoma, kidney cirrhosis, partial or radical nephrectomy, hematoma and nephrolithiasis). Manual and semi-automated delineations have been used as a gold standard. Wieclawek Among 67 delineated medical cases, 62 cases are 'Very good', whereas only 5 are 'Good' according to Cohen's Kappa interpretation. The segmentation results show that mean values of Sensitivity, Specificity, Dice, Jaccard, Cohen's Kappa and Accuracy are 90.29, 99.96, 91.68, 85.04, 91.62 and 99.89% respectively. All 170 medical cases (with and without outlines) have been classified by three independent medical experts as 'Very good' in 143-148 cases, as 'Good' in 15-21 cases and as 'Moderate' in 6-8 cases. An automatic kidney segmentation approach for CT studies to compete with commonly known solutions was developed. The algorithm gives promising results, that were confirmed during validation procedure done on a relatively large database, including 170 CTs with both physiological and pathological cases.

How misapplication of the hydrologic unit framework diminishes the meaning of watersheds

USGS Publications Warehouse

Omernik, James M.; Griffith, Glenn E.; Hughes, Robert M.; Glover, James B.; Weber, Marc H.

2017-01-01

Hydrologic units provide a convenient but problematic nationwide set of geographic polygons based on subjectively determined subdivisions of land surface areas at several hierarchical levels. The problem is that it is impossible to map watersheds, basins, or catchments of relatively equal size and cover the whole country. The hydrologic unit framework is in fact composed mostly of watersheds and pieces of watersheds. The pieces include units that drain to segments of streams, remnant areas, noncontributing areas, and coastal or frontal units that can include multiple watersheds draining to an ocean or large lake. Hence, half or more of the hydrologic units are not watersheds as the name of the framework “Watershed Boundary Dataset” implies. Nonetheless, hydrologic units and watersheds are commonly treated as synonymous, and this misapplication and misunderstanding can have some serious scientific and management consequences. We discuss some of the strengths and limitations of watersheds and hydrologic units as spatial frameworks. Using examples from the Northwest and Southeast United States, we explain how the misapplication of the hydrologic unit framework has altered the meaning of watersheds and can impair understanding associations between spatial geographic characteristics and surface water conditions.

Automated separation of merged Langerhans islets

NASA Astrophysics Data System (ADS)

Švihlík, Jan; Kybic, Jan; Habart, David

2016-03-01

This paper deals with separation of merged Langerhans islets in segmentations in order to evaluate correct histogram of islet diameters. A distribution of islet diameters is useful for determining the feasibility of islet transplantation in diabetes. First, the merged islets at training segmentations are manually separated by medical experts. Based on the single islets, the merged islets are identified and the SVM classifier is trained on both classes (merged/single islets). The testing segmentations were over-segmented using watershed transform and the most probable back merging of islets were found using trained SVM classifier. Finally, the optimized segmentation is compared with ground truth segmentation (correctly separated islets).

Three-dimensional reconstruction of teeth and jaws based on segmentation of CT images using watershed transformation.

PubMed

Naumovich, S S; Naumovich, S A; Goncharenko, V G

2015-01-01

The objective of the present study was the development and clinical testing of a three-dimensional (3D) reconstruction method of teeth and a bone tissue of the jaw on the basis of CT images of the maxillofacial region. 3D reconstruction was performed using the specially designed original software based on watershed transformation. Computed tomograms in digital imaging and communications in medicine format obtained on multispiral CT and CBCT scanners were used for creation of 3D models of teeth and the jaws. The processing algorithm is realized in the stepwise threshold image segmentation with the placement of markers in the mode of a multiplanar projection in areas relating to the teeth and a bone tissue. The developed software initially creates coarse 3D models of the entire dentition and the jaw. Then, certain procedures specify the model of the jaw and cut the dentition into separate teeth. The proper selection of the segmentation threshold is very important for CBCT images having a low contrast and high noise level. The developed semi-automatic algorithm of multispiral and cone beam computed tomogram processing allows 3D models of teeth to be created separating them from a bone tissue of the jaws. The software is easy to install in a dentist's workplace, has an intuitive interface and takes little time in processing. The obtained 3D models can be used for solving a wide range of scientific and clinical tasks.

Valley segments, stream reaches, and channel units [Chapter 2

Treesearch

Peter A. Bisson; David R. Montgomery; John M. Buffington

2006-01-01

Valley segments, stream reaches, and channel units are three hierarchically nested subdivisions of the drainage network (Frissell et al. 1986), falling in size between landscapes and watersheds (see Chapter 1) and individual point measurements made along the stream network (Table 2.1; also see Chapters 3 and 4). These three subdivisions compose the habitat for large,...

77 FR 30280 - Clean Water Act Section 303(d): Withdrawal of Nine Total Maximum Daily Loads (TMDLs)

Federal Register 2010, 2011, 2012, 2013, 2014

2012-05-22

... Chloride, Sulfate, and Total Dissolved Solids (TDS) for the Bayou de L'Outre Watershed in Arkansas. The EPA... pertaining to segments 08040202-006, -007, and -008 with respect to Chlorides, Sulfates and TDS. Public... as follows. Segment (Reach) Waterbody name Pollutant 08040202-006 Bayou de L'Outre.. Chloride...

Natural landscape and stream segment attributes influencing the distribution and relative abundance of riverine smallmouth bass in Missouri

USGS Publications Warehouse

Brewer, S.K.; Rabeni, C.F.; Sowa, S.P.; Annis, G.

2007-01-01

Protecting and restoring fish populations on a regional basis are most effective if the multiscale factors responsible for the relative quality of a fishery are known. We spatially linked Missouri's statewide historical fish collections to environmental features in a geographic information system, which was used as a basis for modeling the importance of landscape and stream segment features in supporting a population of smallmouth bass Micropterus dolomieu. Decision tree analyses were used to develop probability-based models to predict statewide occurrence and within-range relative abundances. We were able to identify the range of smallmouth bass throughout Missouri and the probability of occurrence within that range by using a few broad landscape variables: the percentage of coarse-textured soils in the watershed, watershed relief, and the percentage of soils with low permeability in the watershed. The within-range relative abundance model included both landscape and stream segment variables. As with the statewide probability of occurrence model, soil permeability was particularly significant. The predicted relative abundance of smallmouth bass in stream segments containing low percentages of permeable soils was further influenced by channel gradient, stream size, spring-flow volume, and local slope. Assessment of model accuracy with an independent data set showed good concordance. A conceptual framework involving naturally occurring factors that affect smallmouth bass potential is presented as a comparative model for assessing transferability to other geographic areas and for studying potential land use and biotic effects. We also identify the benefits, caveats, and data requirements necessary to improve predictions and promote ecological understanding. ?? Copyright by the American Fisheries Society 2007.

A Method of Spatial Mapping and Reclassification for High-Spatial-Resolution Remote Sensing Image Classification

PubMed Central

Wang, Guizhou; Liu, Jianbo; He, Guojin

2013-01-01

This paper presents a new classification method for high-spatial-resolution remote sensing images based on a strategic mechanism of spatial mapping and reclassification. The proposed method includes four steps. First, the multispectral image is classified by a traditional pixel-based classification method (support vector machine). Second, the panchromatic image is subdivided by watershed segmentation. Third, the pixel-based multispectral image classification result is mapped to the panchromatic segmentation result based on a spatial mapping mechanism and the area dominant principle. During the mapping process, an area proportion threshold is set, and the regional property is defined as unclassified if the maximum area proportion does not surpass the threshold. Finally, unclassified regions are reclassified based on spectral information using the minimum distance to mean algorithm. Experimental results show that the classification method for high-spatial-resolution remote sensing images based on the spatial mapping mechanism and reclassification strategy can make use of both panchromatic and multispectral information, integrate the pixel- and object-based classification methods, and improve classification accuracy. PMID:24453808

Object-based methods for individual tree identification and tree species classification from high-spatial resolution imagery

NASA Astrophysics Data System (ADS)

Wang, Le

2003-10-01

Modern forest management poses an increasing need for detailed knowledge of forest information at different spatial scales. At the forest level, the information for tree species assemblage is desired whereas at or below the stand level, individual tree related information is preferred. Remote Sensing provides an effective tool to extract the above information at multiple spatial scales in the continuous time domain. To date, the increasing volume and readily availability of high-spatial-resolution data have lead to a much wider application of remotely sensed products. Nevertheless, to make effective use of the improving spatial resolution, conventional pixel-based classification methods are far from satisfactory. Correspondingly, developing object-based methods becomes a central challenge for researchers in the field of Remote Sensing. This thesis focuses on the development of methods for accurate individual tree identification and tree species classification. We develop a method in which individual tree crown boundaries and treetop locations are derived under a unified framework. We apply a two-stage approach with edge detection followed by marker-controlled watershed segmentation. Treetops are modeled from radiometry and geometry aspects. Specifically, treetops are assumed to be represented by local radiation maxima and to be located near the center of the tree-crown. As a result, a marker image was created from the derived treetop to guide a watershed segmentation to further differentiate overlapping trees and to produce a segmented image comprised of individual tree crowns. The image segmentation method developed achieves a promising result for a 256 x 256 CASI image. Then further effort is made to extend our methods to the multiscales which are constructed from a wavelet decomposition. A scale consistency and geometric consistency are designed to examine the gradients along the scale-space for the purpose of separating true crown boundary from unwanted textures occurring due to branches and twigs. As a result from the inverse wavelet transform, the tree crown boundary is enhanced while the unwanted textures are suppressed. Based on the enhanced image, an improvement is achieved when applying the two-stage methods to a high resolution aerial photograph. To improve tree species classification, we develop a new method to choose the optimal scale parameter with the aid of Bhattacharya Distance (BD), a well-known index of class separability in traditional pixel-based classification. The optimal scale parameter is then fed in the process of a region-growing-based segmentation as a break-off value. Our object classification achieves a better accuracy in separating tree species when compared to the conventional Maximum Likelihood Classification (MLC). In summary, we develop two object-based methods for identifying individual trees and classifying tree species from high-spatial resolution imagery. Both methods achieve promising results and will promote integration of Remote Sensing and GIS in forest applications.

Efficiency of erosion mitigation strategies in reducing sediment-loading rates from unpaved road networks into coral reef-bearing waters of the Eastern Caribbean

NASA Astrophysics Data System (ADS)

Ramos-Scharron, Carlos; Gray, Sarah; Sears, Whitney

2014-05-01

Erosion from unpaved road networks represents a critical source of stress affecting the coral reef systems of the U.S. Virgin Islands in the Northeastern Caribbean. Combined community- and government-driven efforts to reduce sediment contributions from unpaved roads in the island of St. John have consisted in improving road drainage design, paving selected road segments, and constructing sediment retention structures. Here we describe empirical evidence attesting to the efficacy of these mitigation efforts. Road drainage improvements reduced sediment production rates to about a third of pre-treatment levels. Road-segment scale erosion rates following paving ranged from 5-30% of pre-treatment levels, depending on road slope and road grading frequency. A 616-m3 sediment retention pond proved to contain 86 Mg of sediment annually and about 94% of the runoff generated from a 12 ha sub-catchment with an unpaved road density of 19 km km-2. Watershed-scale modeling evaluations suggested that the combination of these three treatments within the 13-km2 Coral Bay watershed resulted in the reduction of annual sediment delivery rates from 445 Mg yr-1 to 327 Mg yr-1. Cost-effectiveness analyses suggest that road drainage improvements and construction of the detention pond provided the greatest reductions in sediment delivery per total amount of funds spent. Even though paving is a proven erosion control method, the high costs involved made it a relatively cost-inefficient method. Marine sedimentation of terrigenous sediment (land-derived) was regularly monitored (every 26 days) at 15 near-shore and reef sites from 2008 to 2013 below the treated and undeveloped watersheds. Sediment composition (% terrigenous) determined by loss on ignition was multiplied by the total sediment accumulation rate in tube sediment traps to obtain terrigenous sediment accumulation rates (in mg cm-2 d-1). Mean terrigenous sediment accumulation rates were over 24 (near-shore) and 6 (reef) times greater below developed compared to undeveloped watersheds. Comparisons of marine terrigenous accumulation rates between undeveloped and developed areas were consistent with those based on modeled sediment yields. At all near-shore sites below mitigated watersheds, mean post-mitigation marine terrigenous sediment accumulation rates were reduced by up to 70% of mean pre-mitigation values. Nevertheless, further analysis is required to evaluate whether the observed post-mitigation reduction is strictly related to watershed restoration. At the developed coral reef sites, acute terrigenous sediment accumulation rates during major storms equaled or exceeded coral-stressing levels (>50 mg cm-2d-1). Results from this research are being employed in the design of mitigation strategies within our study areas as well as in other parts of the Caribbean where roads are considered a major threat to coral reefs.

Estimation of carbon storage based on individual tree detection in Pinus densiflora stands using a fusion of aerial photography and LiDAR data.

PubMed

Kim, So-Ra; Kwak, Doo-Ahn; Lee, Woo-Kyun; oLee, Woo-Kyun; Son, Yowhan; Bae, Sang-Won; Kim, Choonsig; Yoo, Seongjin

2010-07-01

The objective of this study was to estimate the carbon storage capacity of Pinus densiflora stands using remotely sensed data by combining digital aerial photography with light detection and ranging (LiDAR) data. A digital canopy model (DCM), generated from the LiDAR data, was combined with aerial photography for segmenting crowns of individual trees. To eliminate errors in over and under-segmentation, the combined image was smoothed using a Gaussian filtering method. The processed image was then segmented into individual trees using a marker-controlled watershed segmentation method. After measuring the crown area from the segmented individual trees, the individual tree diameter at breast height (DBH) was estimated using a regression function developed from the relationship observed between the field-measured DBH and crown area. The above ground biomass of individual trees could be calculated by an image-derived DBH using a regression function developed by the Korea Forest Research Institute. The carbon storage, based on individual trees, was estimated by simple multiplication using the carbon conversion index (0.5), as suggested in guidelines from the Intergovernmental Panel on Climate Change. The mean carbon storage per individual tree was estimated and then compared with the field-measured value. This study suggested that the biomass and carbon storage in a large forest area can be effectively estimated using aerial photographs and LiDAR data.

Interactive approach to segment organs at risk in radiotherapy treatment planning

NASA Astrophysics Data System (ADS)

Dolz, Jose; Kirisli, Hortense A.; Viard, Romain; Massoptier, Laurent

2014-03-01

Accurate delineation of organs at risk (OAR) is required for radiation treatment planning (RTP). However, it is a very time consuming and tedious task. The use in clinic of image guided radiation therapy (IGRT) becomes more and more popular, thus increasing the need of (semi-)automatic methods for delineation of the OAR. In this work, an interactive segmentation approach to delineate OAR is proposed and validated. The method is based on the combination of watershed transformation, which groups small areas of similar intensities in homogeneous labels, and graph cuts approach, which uses these labels to create the graph. Segmentation information can be added in any view - axial, sagittal or coronal -, making the interaction with the algorithm easy and fast. Subsequently, this information is propagated within the whole volume, providing a spatially coherent result. Manual delineations made by experts of 6 OAR - lungs, kidneys, liver, spleen, heart and aorta - over a set of 9 computed tomography (CT) scans were used as reference standard to validate the proposed approach. With a maximum of 4 interactions, a Dice similarity coefficient (DSC) higher than 0.87 was obtained, which demonstrates that, with the proposed segmentation approach, only few interactions are required to achieve similar results as the ones obtained manually. The integration of this method in the RTP process may save a considerable amount of time, and reduce the annotation complexity.

Joint level-set and spatio-temporal motion detection for cell segmentation.

PubMed

Boukari, Fatima; Makrogiannis, Sokratis

2016-08-10

Cell segmentation is a critical step for quantification and monitoring of cell cycle progression, cell migration, and growth control to investigate cellular immune response, embryonic development, tumorigenesis, and drug effects on live cells in time-lapse microscopy images. In this study, we propose a joint spatio-temporal diffusion and region-based level-set optimization approach for moving cell segmentation. Moving regions are initially detected in each set of three consecutive sequence images by numerically solving a system of coupled spatio-temporal partial differential equations. In order to standardize intensities of each frame, we apply a histogram transformation approach to match the pixel intensities of each processed frame with an intensity distribution model learned from all frames of the sequence during the training stage. After the spatio-temporal diffusion stage is completed, we compute the edge map by nonparametric density estimation using Parzen kernels. This process is followed by watershed-based segmentation and moving cell detection. We use this result as an initial level-set function to evolve the cell boundaries, refine the delineation, and optimize the final segmentation result. We applied this method to several datasets of fluorescence microscopy images with varying levels of difficulty with respect to cell density, resolution, contrast, and signal-to-noise ratio. We compared the results with those produced by Chan and Vese segmentation, a temporally linked level-set technique, and nonlinear diffusion-based segmentation. We validated all segmentation techniques against reference masks provided by the international Cell Tracking Challenge consortium. The proposed approach delineated cells with an average Dice similarity coefficient of 89 % over a variety of simulated and real fluorescent image sequences. It yielded average improvements of 11 % in segmentation accuracy compared to both strictly spatial and temporally linked Chan-Vese techniques, and 4 % compared to the nonlinear spatio-temporal diffusion method. Despite the wide variation in cell shape, density, mitotic events, and image quality among the datasets, our proposed method produced promising segmentation results. These results indicate the efficiency and robustness of this method especially for mitotic events and low SNR imaging, enabling the application of subsequent quantification tasks.

Mapping and characterizing selected canopy tree species at the Angkor World Heritage site in Cambodia using aerial data.

PubMed

Singh, Minerva; Evans, Damian; Tan, Boun Suy; Nin, Chan Samean

2015-01-01

At present, there is very limited information on the ecology, distribution, and structure of Cambodia's tree species to warrant suitable conservation measures. The aim of this study was to assess various methods of analysis of aerial imagery for characterization of the forest mensuration variables (i.e., tree height and crown width) of selected tree species found in the forested region around the temples of Angkor Thom, Cambodia. Object-based image analysis (OBIA) was used (using multiresolution segmentation) to delineate individual tree crowns from very-high-resolution (VHR) aerial imagery and light detection and ranging (LiDAR) data. Crown width and tree height values that were extracted using multiresolution segmentation showed a high level of congruence with field-measured values of the trees (Spearman's rho 0.782 and 0.589, respectively). Individual tree crowns that were delineated from aerial imagery using multiresolution segmentation had a high level of segmentation accuracy (69.22%), whereas tree crowns delineated using watershed segmentation underestimated the field-measured tree crown widths. Both spectral angle mapper (SAM) and maximum likelihood (ML) classifications were applied to the aerial imagery for mapping of selected tree species. The latter was found to be more suitable for tree species classification. Individual tree species were identified with high accuracy. Inclusion of textural information further improved species identification, albeit marginally. Our findings suggest that VHR aerial imagery, in conjunction with OBIA-based segmentation methods (such as multiresolution segmentation) and supervised classification techniques are useful for tree species mapping and for studies of the forest mensuration variables.

Mapping and Characterizing Selected Canopy Tree Species at the Angkor World Heritage Site in Cambodia Using Aerial Data

PubMed Central

Singh, Minerva; Evans, Damian; Tan, Boun Suy; Nin, Chan Samean

2015-01-01

At present, there is very limited information on the ecology, distribution, and structure of Cambodia’s tree species to warrant suitable conservation measures. The aim of this study was to assess various methods of analysis of aerial imagery for characterization of the forest mensuration variables (i.e., tree height and crown width) of selected tree species found in the forested region around the temples of Angkor Thom, Cambodia. Object-based image analysis (OBIA) was used (using multiresolution segmentation) to delineate individual tree crowns from very-high-resolution (VHR) aerial imagery and light detection and ranging (LiDAR) data. Crown width and tree height values that were extracted using multiresolution segmentation showed a high level of congruence with field-measured values of the trees (Spearman’s rho 0.782 and 0.589, respectively). Individual tree crowns that were delineated from aerial imagery using multiresolution segmentation had a high level of segmentation accuracy (69.22%), whereas tree crowns delineated using watershed segmentation underestimated the field-measured tree crown widths. Both spectral angle mapper (SAM) and maximum likelihood (ML) classifications were applied to the aerial imagery for mapping of selected tree species. The latter was found to be more suitable for tree species classification. Individual tree species were identified with high accuracy. Inclusion of textural information further improved species identification, albeit marginally. Our findings suggest that VHR aerial imagery, in conjunction with OBIA-based segmentation methods (such as multiresolution segmentation) and supervised classification techniques are useful for tree species mapping and for studies of the forest mensuration variables. PMID:25902148

75 FR 57776 - Clean Water Act Section 303(d): Notice for the Public Review of the Draft Total Maximum Daily...

Federal Register 2010, 2011, 2012, 2013, 2014

2010-09-22

... TMDL for nutrients (nitrogen and phosphorus) and sediment for each of the 92 segments in the tidal... nitrogen and phosphorus, and sediment. EPA, in coordination with the Bay watershed jurisdictions of... nitrogen, phosphorus and sediment, for each of the 92 segments in the Bay and tidal tributaries. EPA...

Automatic segmentation of white matter hyperintensities robust to multicentre acquisition and pathological variability

NASA Astrophysics Data System (ADS)

Samaille, T.; Colliot, O.; Cuingnet, R.; Jouvent, E.; Chabriat, H.; Dormont, D.; Chupin, M.

2012-02-01

White matter hyperintensities (WMH), commonly seen on FLAIR images in elderly people, are a risk factor for dementia onset and have been associated with motor and cognitive deficits. We present here a method to fully automatically segment WMH from T1 and FLAIR images. Iterative steps of non linear diffusion followed by watershed segmentation were applied on FLAIR images until convergence. Diffusivity function and associated contrast parameter were carefully designed to adapt to WMH segmentation. It resulted in piecewise constant images with enhanced contrast between lesions and surrounding tissues. Selection of WMH areas was based on two characteristics: 1) a threshold automatically computed for intensity selection, 2) main location of areas in white matter. False positive areas were finally removed based on their proximity with cerebrospinal fluid/grey matter interface. Evaluation was performed on 67 patients: 24 with amnestic mild cognitive impairment (MCI), from five different centres, and 43 with Cerebral Autosomal Dominant Arteriopathy with Subcortical Infarcts and Leukoaraiosis (CADASIL) acquired in a single centre. Results showed excellent volume agreement with manual delineation (Pearson coefficient: r=0.97, p<0.001) and substantial spatial correspondence (Similarity Index: 72%+/-16%). Our method appeared robust to acquisition differences across the centres as well as to pathological variability.

Relationship between land use and water quality in Pesanggrahan River

NASA Astrophysics Data System (ADS)

Effendi, Hefni; Muslimah, Sri; Ayu Permatasari, Prita

2018-05-01

Pesanggrahan River watershed has several activities such as residential and commercial area in its catchment area. The purpose of this study was to analyse water quality related to spatial land use in Pesanggrahan River using GIS Analysis. River water quality in some locations, did not meet water quality standard of class III. From pollution load estimation it was revealed that segment 2 (Bogor City) has the highest BOD, COD, and TSS of 15,043 kg/day, 25,619 kg/day, and 18,104 kg/day respectively. On the other hand, the most developed area in Pesanggrahan Watershed is located in segment 7 (24.5%). Hence, it can be concluded that although an area has a fairly small developed area, high urban activity can cause high BOD, COD, and TSS.

Benchmark of Client and Server-Side Catchment Delineation Approaches on Web-Based Systems

NASA Astrophysics Data System (ADS)

Demir, I.; Sermet, M. Y.; Sit, M. A.

2016-12-01

Recent advances in internet and cyberinfrastructure technologies have provided the capability to acquire large scale spatial data from various gauges and sensor networks. The collection of environmental data increased demand for applications which are capable of managing and processing large-scale and high-resolution data sets. With the amount and resolution of data sets provided, one of the challenging tasks for organizing and customizing hydrological data sets is delineation of watersheds on demand. Watershed delineation is a process for creating a boundary that represents the contributing area for a specific control point or water outlet, with intent of characterization and analysis of portions of a study area. Although many GIS tools and software for watershed analysis are available on desktop systems, there is a need for web-based and client-side techniques for creating a dynamic and interactive environment for exploring hydrological data. In this project, we demonstrated several watershed delineation techniques on the web with various techniques implemented on the client-side using JavaScript and WebGL, and on the server-side using Python and C++. We also developed a client-side GPGPU (General Purpose Graphical Processing Unit) algorithm to analyze high-resolution terrain data for watershed delineation which allows parallelization using GPU. The web-based real-time analysis of watershed segmentation can be helpful for decision-makers and interested stakeholders while eliminating the need of installing complex software packages and dealing with large-scale data sets. Utilization of the client-side hardware resources also eliminates the need of servers due its crowdsourcing nature. Our goal for future work is to improve other hydrologic analysis methods such as rain flow tracking by adapting presented approaches.

Muscle segmentation in time series images of Drosophila metamorphosis.

PubMed

Yadav, Kuleesha; Lin, Feng; Wasser, Martin

2015-01-01

In order to study genes associated with muscular disorders, we characterize the phenotypic changes in Drosophila muscle cells during metamorphosis caused by genetic perturbations. We collect in vivo images of muscle fibers during remodeling of larval to adult muscles. In this paper, we focus on the new image processing pipeline designed to quantify the changes in shape and size of muscles. We propose a new two-step approach to muscle segmentation in time series images. First, we implement a watershed algorithm to divide the image into edge-preserving regions, and then, we classify these regions into muscle and non-muscle classes on the basis of shape and intensity. The advantage of our method is two-fold: First, better results are obtained because classification of regions is constrained by the shape of muscle cell from previous time point; and secondly, minimal user intervention results in faster processing time. The segmentation results are used to compare the changes in cell size between controls and reduction of the autophagy related gene Atg 9 during Drosophila metamorphosis.

Extraction of the number of peroxisomes in yeast cells by automated image analysis.

PubMed

Niemistö, Antti; Selinummi, Jyrki; Saleem, Ramsey; Shmulevich, Ilya; Aitchison, John; Yli-Harja, Olli

2006-01-01

An automated image analysis method for extracting the number of peroxisomes in yeast cells is presented. Two images of the cell population are required for the method: a bright field microscope image from which the yeast cells are detected and the respective fluorescent image from which the number of peroxisomes in each cell is found. The segmentation of the cells is based on clustering the local mean-variance space. The watershed transformation is thereafter employed to separate cells that are clustered together. The peroxisomes are detected by thresholding the fluorescent image. The method is tested with several images of a budding yeast Saccharomyces cerevisiae population, and the results are compared with manually obtained results.

Automatic Extraction of Planetary Image Features

NASA Technical Reports Server (NTRS)

Troglio, G.; LeMoigne, J.; Moser, G.; Serpico, S. B.; Benediktsson, J. A.

2009-01-01

With the launch of several Lunar missions such as the Lunar Reconnaissance Orbiter (LRO) and Chandrayaan-1, a large amount of Lunar images will be acquired and will need to be analyzed. Although many automatic feature extraction methods have been proposed and utilized for Earth remote sensing images, these methods are not always applicable to Lunar data that often present low contrast and uneven illumination characteristics. In this paper, we propose a new method for the extraction of Lunar features (that can be generalized to other planetary images), based on the combination of several image processing techniques, a watershed segmentation and the generalized Hough Transform. This feature extraction has many applications, among which image registration.

A generic nuclei detection method for histopathological breast images

NASA Astrophysics Data System (ADS)

Kost, Henning; Homeyer, André; Bult, Peter; Balkenhol, Maschenka C. A.; van der Laak, Jeroen A. W. M.; Hahn, Horst K.

2016-03-01

The detection of cell nuclei plays a key role in various histopathological image analysis problems. Considering the high variability of its applications, we propose a novel generic and trainable detection approach. Adaption to specific nuclei detection tasks is done by providing training samples. A trainable deconvolution and classification algorithm is used to generate a probability map indicating the presence of a nucleus. The map is processed by an extended watershed segmentation step to identify the nuclei positions. We have tested our method on data sets with different stains and target nuclear types. We obtained F1-measures between 0.83 and 0.93.

Automated analysis of Physarum network structure and dynamics

NASA Astrophysics Data System (ADS)

Fricker, Mark D.; Akita, Dai; Heaton, Luke LM; Jones, Nick; Obara, Boguslaw; Nakagaki, Toshiyuki

2017-06-01

We evaluate different ridge-enhancement and segmentation methods to automatically extract the network architecture from time-series of Physarum plasmodia withdrawing from an arena via a single exit. Whilst all methods gave reasonable results, judged by precision-recall analysis against a ground-truth skeleton, the mean phase angle (Feature Type) from intensity-independent, phase-congruency edge enhancement and watershed segmentation was the most robust to variation in threshold parameters. The resultant single pixel-wide segmented skeleton was converted to a graph representation as a set of weighted adjacency matrices containing the physical dimensions of each vein, and the inter-vein regions. We encapsulate the complete image processing and network analysis pipeline in a downloadable software package, and provide an extensive set of metrics that characterise the network structure, including hierarchical loop decomposition to analyse the nested structure of the developing network. In addition, the change in volume for each vein and intervening plasmodial sheet was used to predict the net flow across the network. The scaling relationships between predicted current, speed and shear force with vein radius were consistent with predictions from Murray’s law. This work was presented at PhysNet 2015.

ANNIE - INTERACTIVE PROCESSING OF DATA BASES FOR HYDROLOGIC MODELS.

USGS Publications Warehouse

Lumb, Alan M.; Kittle, John L.

1985-01-01

ANNIE is a data storage and retrieval system that was developed to reduce the time and effort required to calibrate, verify, and apply watershed models that continuously simulate water quantity and quality. Watershed models have three categories of input: parameters to describe segments of a drainage area, linkage of the segments, and time-series data. Additional goals for ANNIE include the development of software that is easily implemented on minicomputers and some microcomputers and software that has no special requirements for interactive display terminals. Another goal is for the user interaction to be based on the experience of the user so that ANNIE is helpful to the inexperienced user and yet efficient and brief for the experienced user. Finally, the code should be designed so that additional hydrologic models can easily be added to ANNIE.

Prioritizing Road Treatments using the Geomorphic Roads Analysis and Inventory Package (GRAIP) to Improve Watershed Conditions in the Wall Creek Watershed, Oregon

NASA Astrophysics Data System (ADS)

Day, K. T.; Black, T.; Clifton, C.; Luce, C.; McCune, S.; Nelson, N.

2010-12-01

Wall Creek, tributary to the North Fork John Day River in eastern Oregon, was identified as a priority watershed by the Umatilla National Forest for restoration in 2002. Most streams in this 518 km2 multi-ownership watershed are designated critical habitat for threatened steelhead. Eight streams are listed on the Oregon 303(d) list for elevated temperatures and excess sedimentation. Over 1000 km of public and private roads in the watershed present a major source of potential water quality and habitat impairment. We conducted a watershed-wide inventory of roads using the Geomorphic Roads Analysis and Inventory Package (GRAIP) in 2009 to quantify sediment contributions from roads to streams. GRAIP is a field and GIS-based model developed by the Forest Service Rocky Mountain Research Station and Utah State University that georeferences and quantifies road hydrologic connectivity, sediment production and delivery, mass wasting, and risk of diversion and plugging at stream crossings. Field survey and modeling produced data for 6,473 drainage locations on 726 km of road (most of the publically owned roads) quantifying the location and mass of sediment produced and delivered to streams. Findings indicate a relatively small subset of roads deliver the majority of road-produced fine sediment; 12 percent of the road length delivers 90 percent of the total fine sediment to streams. Overall fine sediment production in the watershed is relatively low (with an estimated background erosion rate of 518,000 kg/yr for the watershed) and sediment produced and delivered from the road system appears to be a modest addition. Road surfaces produce approximately 81,455 kg of fine sediment per year, with 20,976 kg/year delivered to the stream network. Fifty-nine gullies were observed, 41 of which received road runoff. Sixteen road-related landslides were also observed. The excavated volume of these features totals 3,922,000 kg which is equivalent to 175 years of fine sediment delivery at the current rate. These data are being used by the Umatilla National Forest to prioritize road rehabilitation activities including storm risk reduction and road decommissioning, and to move toward an ecologically and economically sustainable road system. The highest sediment-delivering road segments were evaluated in 2010 to prioritize stabilization and storm damage risk reduction projects. Approximately 30 km of hydrologically connected road segments will be proposed for treatments including closure, decommissioning, and stabilization activities. Once complete, these improvements would result in the reduction of about 7,000 kg/year of fine sediment delivered to the fluvial system from the road network, or a third of the total road contribution to stream sedimentation. Methods and results presented are part of federal land management agency involvement in Total Maximum Daily Load development in the John Day Basin. The project is a collaborative effort with funding and support from the Environmental Protection Agency, Bureau of Land Management, and Oregon Department of Environmental Quality.

The Application of a WEPP Technology to a Complex Watershed Analysis

NASA Astrophysics Data System (ADS)

Elliot, William; Miller, Ina Sue; Dobre, Mariana

2017-04-01

Forest restoration activities are essential in many forest stands, where previous management and fire suppression has resulted in stands with high density, diseased trees and excessive fuel loads. Trying to balance the watershed impacts of restoration activities such as thinning, selective harvesting, and prescribed fire against the significant impact of wildfire is challenging. The process is further aggravated by the necessity of a road network if management activities include timber removal. We propose to present an approach to a watershed analysis for a 3400-ha of fuel reduction project within an 18,0000-ha sensitive watershed in the Nez Perce National Forest in Northern Idaho, USA. The FlamMap fire spread model was first used to predict the distribution of potential fire severity on the landscape for the current fuel load, and for a landscape that had been treated by thinning and/or prescribed fire. FlamMap predicts the flame length by 30-m pixel as a function of fuel load and water content, wind speed, and slope steepness and aspect. The flame length distribution was then classified so that the distribution of burn severity (unburned, low, moderate and high severity) was similar to the distributions observed on recent wildfires in the Forest. The flame length classes determined for the current fuel loads were also used for the treated condition flame lengths, where predominantly unburned or low severity fire severities were predicted. The burn severity maps were uploaded to a web site that was developed to provide soil and management files reflecting burn severity and soil texture, formatted for the Geospatial interface to the Water Erosion Prediction Project (GeoWEPP). The study area was divided into 40 sub watersheds under 2.5 km2 each for GeoWEPP analysis. GeoWEPP was run for an undisturbed forest; for the burn severity following wildfire for the current and treated fuel loads; for prescribed fire, either broadcast or jack pot burn; and for thinning either by tractor or by skyline logging. The GeoWEPP erosion estimates by hillslope polygon were merged with the proposed treatment polygons to produce maps of erosion for each condition for each treatment polygon. Road network erosion was estimated using a new online GIS tool to estimate road segment length and steepness, and linking those topographic values to the WEPP model for erosion prediction by road segment. The results were summarized and compared to earlier estimates of sediment delivery using a locally-developed cumulative watershed effects analysis. The results were similar from both tools, in spite of using very different erosion estimation methods, and similar to regional observations of forest watershed sediment delivery ( 12.5 Mg/sq km). The study found that the erosion risk from wildfire was 5 times greater than sediment generated by forest management, justifying the proposed restoration activities to reduce fire risk. Sediment generated from the road network, however, was unacceptably high suggesting that methods improve road erosion prediction and/or to reduce road erosion are warranted.

Morphometric Analysis to Prioritize Sub-Watershed for Flood Risk Assessment in Central Karakoram National Park Using Gis/rs Approach

NASA Astrophysics Data System (ADS)

Syed, N. H.; Rehman, A. A.; Hussain, D.; Ishaq, S.; Khan, A. A.

2017-11-01

Morphometric analysis is vital for any watershed investigation and it is inevitable for flood risk assessment in sub-watershed basins. Present study undertaken to carry out critical evaluation and assessment of sub watershed morphological parameters for flood risk assessment of Central Karakorum National Park (CKNP), where Geographical information system and remote sensing (GIS & RS) approach used for quantifying the parameter and mapping of sub watershed units. ASTER DEM used as a geo-spatial data for watershed delineation and stream network. Morphometric analysis carried out using spatial analyst tool of ArcGIS 10.2. The parameters included were bifurcation ratio (Rb), Drainage Texture (Rt), Circulatory ratio (Rc), Elongated ratio (Re), Drainage density (Dd), Stream Length (Lu), Stream order (Su), Slope and Basin length (Lb) have calculated separately. The analysis revealed that the stream order varies from order 1 to 6 and the total numbers of stream segments of all orders were 52. Multi criteria analysis process used to calculate the risk factor. As an accomplished result, map of sub watershed prioritization developed using weighted standardized risk factor. These results helped to understand sensitivity of flush floods in different sub watersheds of the study area and leaded to better management of the mountainous regions in prospect of flush floods.

Automatic Segmentation of Granular Objects in Images: Combining Local Density Clustering and Gradient-Barrier Watershed

DTIC Science & Technology

2014-01-01

in applications, such as the recognition of biological cells [12,17], cell nuclei [8–10], colonies, and pollen [34,35], as well as nanoparticles [6... pollen image shown in Fig. 8, we see that two pollen grains on the upper-right are merged in the gradient-weighted distance trans- form watershed...10.1016/j.patcog.2013.11.004i images, pollen images, as well as physical nanoparticle images. This is only a small selection of this approach’s

Extracting oil palm crown from WorldView-2 satellite image

NASA Astrophysics Data System (ADS)

Korom, A.; Phua, M.-H.; Hirata, Y.; Matsuura, T.

2014-02-01

Oil palm (OP) is the most commercial crop in Malaysia. Estimating the crowns is important for biomass estimation from high resolution satellite (HRS) image. This study examined extraction of individual OP crown from a WorldView-2 image using twofold algorithms, i.e., masking of Non-OP pixels and detection of individual OP crown based on the watershed segmentation of greyscale images. The study site was located in Beluran district, central Sabah, where matured OPs with the age ranging from 15 to 25 years old have been planted. We examined two compound vegetation indices of (NDVI+1)*DVI and NDII for masking non-OP crown areas. Using kappa statistics, an optimal threshold value was set with the highest accuracy at 90.6% for differentiating OP crown areas from Non-OP areas. After the watershed segmentation of OP crown areas with additional post-procedures, about 77% of individual OP crowns were successfully detected in comparison to the manual based delineation. Shape and location of each crown segment was then assessed based on a modified version of the goodness measures of Möller et al which was 0.3, indicating an acceptable CSGM (combined segmentation goodness measures) agreements between the automated and manually delineated crowns (perfect case is '1').

Leaf Segmentation and Tracking in Arabidopsis thaliana Combined to an Organ-Scale Plant Model for Genotypic Differentiation

PubMed Central

Viaud, Gautier; Loudet, Olivier; Cournède, Paul-Henry

2017-01-01

A promising method for characterizing the phenotype of a plant as an interaction between its genotype and its environment is to use refined organ-scale plant growth models that use the observation of architectural traits, such as leaf area, containing a lot of information on the whole history of the functioning of the plant. The Phenoscope, a high-throughput automated platform, allowed the acquisition of zenithal images of Arabidopsis thaliana over twenty one days for 4 different genotypes. A novel image processing algorithm involving both segmentation and tracking of the plant leaves allows to extract areas of the latter. First, all the images in the series are segmented independently using a watershed-based approach. A second step based on ellipsoid-shaped leaves is then applied on the segments found to refine the segmentation. Taking into account all the segments at every time, the whole history of each leaf is reconstructed by choosing recursively through time the most probable segment achieving the best score, computed using some characteristics of the segment such as its orientation, its distance to the plant mass center and its area. These results are compared to manually extracted segments, showing a very good accordance in leaf rank and that they therefore provide low-biased data in large quantity for leaf areas. Such data can therefore be exploited to design an organ-scale plant model adapted from the existing GreenLab model for A. thaliana and subsequently parameterize it. This calibration of the model parameters should pave the way for differentiation between the Arabidopsis genotypes. PMID:28123392

First Prismatic Building Model Reconstruction from Tomosar Point Clouds

NASA Astrophysics Data System (ADS)

Sun, Y.; Shahzad, M.; Zhu, X.

2016-06-01

This paper demonstrates for the first time the potential of explicitly modelling the individual roof surfaces to reconstruct 3-D prismatic building models using spaceborne tomographic synthetic aperture radar (TomoSAR) point clouds. The proposed approach is modular and works as follows: it first extracts the buildings via DSM generation and cutting-off the ground terrain. The DSM is smoothed using BM3D denoising method proposed in (Dabov et al., 2007) and a gradient map of the smoothed DSM is generated based on height jumps. Watershed segmentation is then adopted to oversegment the DSM into different regions. Subsequently, height and polygon complexity constrained merging is employed to refine (i.e., to reduce) the retrieved number of roof segments. Coarse outline of each roof segment is then reconstructed and later refined using quadtree based regularization plus zig-zag line simplification scheme. Finally, height is associated to each refined roof segment to obtain the 3-D prismatic model of the building. The proposed approach is illustrated and validated over a large building (convention center) in the city of Las Vegas using TomoSAR point clouds generated from a stack of 25 images using Tomo-GENESIS software developed at DLR.

Population-scale movement of coastal cutthroat trout in a naturally isolated stream network

USGS Publications Warehouse

Gresswell, R.E.; Hendricks, S.R.

2007-01-01

To identify population-scale patterns of movement, coastal cutthroat trout Oncorhynchus clarkii clarkii tagged and marked (35 radio-tagged, 749 passive integrated transponder [PIT]-tagged, and 3,025 fin-clipped) were monitored from June 1999 to August 2000. The study watershed, located in western Oregon, was above a natural barrier to upstream movement. Emigration out of the watershed was estimated with a rotating fish trap. Approximately 70% of recaptured coastal cutthroat trout with PIT tags and 86% of those with radio tags moved predominantly at the channel-unit scale (2-95 m); fewer tagged fish moved at the reach scale (66-734 m) and segment scale (229-3,479 m). In general, movement was greatest in April as spawning peaked and lowest in October, when discharge was at its lowest. Only 63 (<1% of tagged and marked fish) coastal cutthroat trout were captured in the fish trap. Trap efficiency was about 33%, and the expanded estimate of emigrants between February and June was 173 fish. These results suggest that unit-scale movement is common throughout the year and that reach- and segment-scale movements are important during the winter and spring. Although movement in headwater streams is most common at the channel-unit scale, restoration of individual channel units of stream may not benefit the population at the watershed scale unless these activities are undertaken in the context of the greater whole. Individual coastal cutthroat trout move great distances, even within the small watersheds in the Oregon Coast Range, and although these movements may be infrequent, they may contribute substantially to recolonization after stochastic extirpation events (e.g., landslides and debris flows). Management strategies that focus on maintaining and restoring connectivity in a watershed represent an important step toward protecting the evolutionary capacity of stream salmonids. ??

The Use of a Geomorphometric Classification to Estimate Subsurface Heterogeneity in the Unconsolidated Sediments of Mountain Watersheds

NASA Astrophysics Data System (ADS)

Cairns, D.; Byrne, J. M.; Jiskoot, H.; McKenzie, J. M.; Johnson, D. L.

2013-12-01

Groundwater controls many aspects of water quantity and quality in mountain watersheds. Groundwater recharge and flow originating in mountain watersheds are often difficult to quantify due to challenges in the characterization of the local geology, as subsurface data are sparse and difficult to collect. Remote sensing data are more readily available and are beneficial for the characterization of watershed hydrodynamics. We present an automated geomorphometric model to identify the approximate spatial distribution of geomorphic features, and to segment each of these features based on relative hydrostratigraphic differences. A digital elevation model (DEM) dataset and predefined indices are used as inputs in a mountain watershed. The model uses periglacial, glacial, fluvial, slope evolution and lacustrine processes to identify regions that are subsequently delineated using morphometric principles. A 10 m cell size DEM from the headwaters of the St. Mary River watershed in Glacier National Park, Montana, was considered sufficient for this research. Morphometric parameters extracted from the DEM that were found to be useful for the calibration of the model were elevation, slope, flow direction, flow accumulation, and surface roughness. Algorithms were developed to utilize these parameters and delineate the distributions of bedrock outcrops, periglacial landscapes, alluvial channels, fans and outwash plains, glacial depositional features, talus slopes, and other mass wasted material. Theoretical differences in sedimentation and hydrofacies associated with each of the geomorphic features were used to segment the watershed into units reflecting similar hydrogeologic properties such as hydraulic conductivity and thickness. The results of the model were verified by comparing the distribution of geomorphic features with published geomorphic maps. Although agreement in semantics between datasets caused difficulties, a consensus yielded a comparison Dice Coefficient of 0.65. The results can be used to assist in groundwater model calibration, or to estimate spatial differences in near-surface groundwater behaviour. Verification of the geomorphometric model would be augmented by evaluating its success after use in the calibration of the groundwater simulation. These results may also be used directly in momentum-based equations to create a stochastic routing routine beneath the soil interface for a hydrometeorological model.

Urban Watershed Forestry Manual Part 1: Methods for Increasing Forest Cover in a Watershed

Treesearch

Karen Cappiella; Tom Schueler; Tiffany Wright

2005-01-01

This manual is one in a three-part series on using trees to protect and restore urban watersheds. A brief description of each part follows. Part 1: Methods for Increasing Forest Cover in a Watershed introduces the emerging topic of urban watershed forestry. This part also presents new methods for the watershed planner or forester to systematically measure watershed...

Water allocation assessment in low flow river under data scarce conditions: a study of hydrological simulation in Mediterranean basin.

PubMed

Bangash, Rubab F; Passuello, Ana; Hammond, Michael; Schuhmacher, Marta

2012-12-01

River Francolí is a small river in Catalonia (northeastern Spain) with an average annual low flow (~2 m(3)/s). The purpose of the River Francolí watershed assessments is to support and inform region-wide planning efforts from the perspective of water protection, climate change and water allocation. In this study, a hydrological model of the Francolí River watershed was developed for use as a tool for watershed planning, water resource assessment, and ultimately, water allocation purposes using hydrological data from 2002 to 2006 inclusive. The modeling package selected for this application is DHI's MIKE BASIN. This model is a strategic scale water resource management simulation model, which includes modeling of both land surface and subsurface hydrological processes. Topographic, land use, hydrological, rainfall, and meteorological data were used to develop the model segmentation and input. Due to the unavailability of required catchment runoff data, the NAM rainfall-runoff model was used to calculate runoff of all the sub-watersheds. The results reveal a potential pressure on the availability of groundwater and surface water in the lower part of River Francolí as was expected by the IPCC for Mediterranean river basins. The study also revealed that due to the complex hydrological regime existing in the study area and data scarcity, a comprehensive physically based method was required to better represent the interaction between groundwater and surface water. The combined ArcGIS/MIKE BASIN models appear as a useful tool to assess the hydrological cycle and to better understand water allocation to different sectors in the Francolí River watershed. Copyright © 2012 Elsevier B.V. All rights reserved.

A contrast enhancement method for improving the segmentation of breast lesions on ultrasonography.

PubMed

Flores, Wilfrido Gómez; Pereira, Wagner Coelho de Albuquerque

2017-01-01

This paper presents an adaptive contrast enhancement method based on sigmoidal mapping function (SACE) used for improving the computerized segmentation of breast lesions on ultrasound. First, from the original ultrasound image an intensity variation map is obtained, which is used to generate local sigmoidal mapping functions related to distinct contextual regions. Then, a bilinear interpolation scheme is used to transform every original pixel to a new gray level value. Also, four contrast enhancement techniques widely used in breast ultrasound enhancement are implemented: histogram equalization (HEQ), contrast limited adaptive histogram equalization (CLAHE), fuzzy enhancement (FEN), and sigmoid based enhancement (SEN). In addition, these contrast enhancement techniques are considered in a computerized lesion segmentation scheme based on watershed transformation. The performance comparison among techniques is assessed in terms of both the quality of contrast enhancement and the segmentation accuracy. The former is quantified by the measure, where the greater the value, the better the contrast enhancement, whereas the latter is calculated by the Jaccard index, which should tend towards unity to indicate adequate segmentation. The experiments consider a data set with 500 breast ultrasound images. The results show that SACE outperforms its counterparts, where the median values for the measure are: SACE: 139.4, SEN: 68.2, HEQ: 64.1, CLAHE: 62.8, and FEN: 7.9. Considering the segmentation performance results, the SACE method presents the largest accuracy, where the median values for the Jaccard index are: SACE: 0.81, FEN: 0.80, CLAHE: 0.79, HEQ: 77, and SEN: 0.63. The SACE method performs well due to the combination of three elements: (1) the intensity variation map reduces intensity variations that could distort the real response of the mapping function, (2) the sigmoidal mapping function enhances the gray level range where the transition between lesion and background is found, and (3) the adaptive enhancing scheme for coping with local contrasts. Hence, the SACE approach is appropriate for enhancing contrast before computerized lesion segmentation. Copyright © 2016 Elsevier Ltd. All rights reserved.

Validation of pore network simulations of ex-situ water distributions in a gas diffusion layer of proton exchange membrane fuel cells with X-ray tomographic images

NASA Astrophysics Data System (ADS)

Agaesse, Tristan; Lamibrac, Adrien; Büchi, Felix N.; Pauchet, Joel; Prat, Marc

2016-11-01

Understanding and modeling two-phase flows in the gas diffusion layer (GDL) of proton exchange membrane fuel cells are important in order to improve fuel cells performance. They are scientifically challenging because of the peculiarities of GDLs microstructures. In the present work, simulations on a pore network model are compared to X-ray tomographic images of water distributions during an ex-situ water invasion experiment. A method based on watershed segmentation was developed to extract a pore network from the 3D segmented image of the dry GDL. Pore network modeling and a full morphology model were then used to perform two-phase simulations and compared to the experimental data. The results show good agreement between experimental and simulated microscopic water distributions. Pore network extraction parameters were also benchmarked using the experimental data and results from full morphology simulations.

The Stream-Catchment (StreamCat) and Lake-Catchment ...

EPA Pesticide Factsheets

Background/Question/MethodsLake and stream conditions respond to both natural and human-related landscape features. Characterizing these features within contributing areas (i.e., delineated watersheds) of streams and lakes could improve our understanding of how biological conditions vary spatially and improve the use, management, and restoration of these aquatic resources. However, the specialized geospatial techniques required to define and characterize stream and lake watersheds has limited their widespread use in both scientific and management efforts at large spatial scales. We developed the StreamCat and LakeCat Datasets to model, predict, and map the probable biological conditions of streams and lakes across the conterminous US (CONUS). Both StreamCat and LakeCat contain watershed-level characterizations of several hundred natural (e.g., soils, geology, climate, and land cover) and anthropogenic (e.g., urbanization, agriculture, mining, and forest management) landscape features for ca. 2.6 million stream segments and 376,000 lakes across the CONUS, respectively. These datasets can be paired with field samples to provide independent variables for modeling and other analyses. We paired 1,380 stream and 1,073 lake samples from the USEPAs National Aquatic Resource Surveys with StreamCat and LakeCat and used random forest (RF) to model and then map an invertebrate condition index and chlorophyll a concentration, respectively. Results/ConclusionsThe invertebrate

Change detection of polarimetric SAR images based on the KummerU Distribution

NASA Astrophysics Data System (ADS)

Chen, Quan; Zou, Pengfei; Li, Zhen; Zhang, Ping

2014-11-01

In the society of PolSAR image segmentation, change detection and classification, the classical Wishart distribution has been used for a long time, but it especially suit to low-resolution SAR image, because in traditional sensors, only a small number of scatterers are present in each resolution cell. With the improving of SAR systems these years, the classical statistical models can therefore be reconsidered for high resolution and polarimetric information contained in the images acquired by these advanced systems. In this study, SAR image segmentation algorithm based on level-set method, added with distance regularized level-set evolution (DRLSE) is performed using Envisat/ASAR single-polarization data and Radarsat-2 polarimetric images, respectively. KummerU heterogeneous clutter model is used in the later to overcome the homogeneous hypothesis at high resolution cell. An enhanced distance regularized level-set evolution (DRLSE-E) is also applied in the later, to ensure accurate computation and stable level-set evolution. Finally, change detection based on four polarimetric Radarsat-2 time series images is carried out at Genhe area of Inner Mongolia Autonomous Region, NorthEastern of China, where a heavy flood disaster occurred during the summer of 2013, result shows the recommend segmentation method can detect the change of watershed effectively.

Automatic Nuclei Segmentation in H&E Stained Breast Cancer Histopathology Images

PubMed Central

Veta, Mitko; van Diest, Paul J.; Kornegoor, Robert; Huisman, André; Viergever, Max A.; Pluim, Josien P. W.

2013-01-01

The introduction of fast digital slide scanners that provide whole slide images has led to a revival of interest in image analysis applications in pathology. Segmentation of cells and nuclei is an important first step towards automatic analysis of digitized microscopy images. We therefore developed an automated nuclei segmentation method that works with hematoxylin and eosin (H&E) stained breast cancer histopathology images, which represent regions of whole digital slides. The procedure can be divided into four main steps: 1) pre-processing with color unmixing and morphological operators, 2) marker-controlled watershed segmentation at multiple scales and with different markers, 3) post-processing for rejection of false regions and 4) merging of the results from multiple scales. The procedure was developed on a set of 21 breast cancer cases (subset A) and tested on a separate validation set of 18 cases (subset B). The evaluation was done in terms of both detection accuracy (sensitivity and positive predictive value) and segmentation accuracy (Dice coefficient). The mean estimated sensitivity for subset A was 0.875 (±0.092) and for subset B 0.853 (±0.077). The mean estimated positive predictive value was 0.904 (±0.075) and 0.886 (±0.069) for subsets A and B, respectively. For both subsets, the distribution of the Dice coefficients had a high peak around 0.9, with the vast majority of segmentations having values larger than 0.8. PMID:23922958

Automatic nuclei segmentation in H&E stained breast cancer histopathology images.

PubMed

Veta, Mitko; van Diest, Paul J; Kornegoor, Robert; Huisman, André; Viergever, Max A; Pluim, Josien P W

2013-01-01

The introduction of fast digital slide scanners that provide whole slide images has led to a revival of interest in image analysis applications in pathology. Segmentation of cells and nuclei is an important first step towards automatic analysis of digitized microscopy images. We therefore developed an automated nuclei segmentation method that works with hematoxylin and eosin (H&E) stained breast cancer histopathology images, which represent regions of whole digital slides. The procedure can be divided into four main steps: 1) pre-processing with color unmixing and morphological operators, 2) marker-controlled watershed segmentation at multiple scales and with different markers, 3) post-processing for rejection of false regions and 4) merging of the results from multiple scales. The procedure was developed on a set of 21 breast cancer cases (subset A) and tested on a separate validation set of 18 cases (subset B). The evaluation was done in terms of both detection accuracy (sensitivity and positive predictive value) and segmentation accuracy (Dice coefficient). The mean estimated sensitivity for subset A was 0.875 (±0.092) and for subset B 0.853 (±0.077). The mean estimated positive predictive value was 0.904 (±0.075) and 0.886 (±0.069) for subsets A and B, respectively. For both subsets, the distribution of the Dice coefficients had a high peak around 0.9, with the vast majority of segmentations having values larger than 0.8.

Automated identification of the lung contours in positron emission tomography

NASA Astrophysics Data System (ADS)

Nery, F.; Silvestre Silva, J.; Ferreira, N. C.; Caramelo, F. J.; Faustino, R.

2013-03-01

Positron Emission Tomography (PET) is a nuclear medicine imaging technique that permits to analyze, in three dimensions, the physiological processes in vivo. One of the areas where PET has demonstrated its advantages is in the staging of lung cancer, where it offers better sensitivity and specificity than other techniques such as CT. On the other hand, accurate segmentation, an important procedure for Computer Aided Diagnostics (CAD) and automated image analysis, is a challenging task given the low spatial resolution and the high noise that are intrinsic characteristics of PET images. This work presents an algorithm for the segmentation of lungs in PET images, to be used in CAD and group analysis in a large patient database. The lung boundaries are automatically extracted from a PET volume through the application of a marker-driven watershed segmentation procedure which is robust to the noise. In order to test the effectiveness of the proposed method, we compared the segmentation results in several slices using our approach with the results obtained from manual delineation. The manual delineation was performed by nuclear medicine physicians that used a software routine that we developed specifically for this task. To quantify the similarity between the contours obtained from the two methods, we used figures of merit based on region and also on contour definitions. Results show that the performance of the algorithm was similar to the performance of human physicians. Additionally, we found that the algorithm-physician agreement is similar (statistically significant) to the inter-physician agreement.

Exploring changes in the spatial distribution of stream baseflow generation during a seasonal recession

USGS Publications Warehouse

Payn, R.A.; Gooseff, M.N.; McGlynn, B.L.; Bencala, K.E.; Wondzell, S.M.

2012-01-01

Relating watershed structure to streamflow generation is a primary focus of hydrology. However, comparisons of longitudinal variability in stream discharge with adjacent valley structure have been rare, resulting in poor understanding of the distribution of the hydrologic mechanisms that cause variability in streamflow generation along valleys. This study explores detailed surveys of stream base flow across a gauged, 23 km2 mountain watershed. Research objectives were (1) to relate spatial variability in base flow to fundamental elements of watershed structure, primarily topographic contributing area, and (2) to assess temporal changes in the spatial patterns of those relationships during a seasonal base flow recession. We analyzed spatiotemporal variability in base flow using (1) summer hydrographs at the study watershed outlet and 5 subwatershed outlets and (2) longitudinal series of discharge measurements every ~100 m along the streams of the 3 largest subwatersheds (1200 to 2600 m in valley length), repeated 2 to 3 times during base flow recession. Reaches within valley segments of 300 to 1200 m in length tended to demonstrate similar streamflow generation characteristics. Locations of transitions between these segments were consistent throughout the recession, and tended to be collocated with abrupt longitudinal transitions in valley slope or hillslope-riparian characteristics. Both within and among subwatersheds, correlation between the spatial distributions of streamflow and topographic contributing area decreased during the recession, suggesting a general decrease in the influence of topography on stream base flow contributions. As topographic controls on base flow evidently decreased, multiple aspects of subsurface structure were likely to have gained influence.

Joint graph cut and relative fuzzy connectedness image segmentation algorithm.

PubMed

Ciesielski, Krzysztof Chris; Miranda, Paulo A V; Falcão, Alexandre X; Udupa, Jayaram K

2013-12-01

We introduce an image segmentation algorithm, called GC(sum)(max), which combines, in novel manner, the strengths of two popular algorithms: Relative Fuzzy Connectedness (RFC) and (standard) Graph Cut (GC). We show, both theoretically and experimentally, that GC(sum)(max) preserves robustness of RFC with respect to the seed choice (thus, avoiding "shrinking problem" of GC), while keeping GC's stronger control over the problem of "leaking though poorly defined boundary segments." The analysis of GC(sum)(max) is greatly facilitated by our recent theoretical results that RFC can be described within the framework of Generalized GC (GGC) segmentation algorithms. In our implementation of GC(sum)(max) we use, as a subroutine, a version of RFC algorithm (based on Image Forest Transform) that runs (provably) in linear time with respect to the image size. This results in GC(sum)(max) running in a time close to linear. Experimental comparison of GC(sum)(max) to GC, an iterative version of RFC (IRFC), and power watershed (PW), based on a variety medical and non-medical images, indicates superior accuracy performance of GC(sum)(max) over these other methods, resulting in a rank ordering of GC(sum)(max)>PW∼IRFC>GC. Copyright © 2013 Elsevier B.V. All rights reserved.

Automated system for characterization and classification of malaria-infected stages using light microscopic images of thin blood smears.

PubMed

Das, D K; Maiti, A K; Chakraborty, C

2015-03-01

In this paper, we propose a comprehensive image characterization cum classification framework for malaria-infected stage detection using microscopic images of thin blood smears. The methodology mainly includes microscopic imaging of Leishman stained blood slides, noise reduction and illumination correction, erythrocyte segmentation, feature selection followed by machine classification. Amongst three-image segmentation algorithms (namely, rule-based, Chan-Vese-based and marker-controlled watershed methods), marker-controlled watershed technique provides better boundary detection of erythrocytes specially in overlapping situations. Microscopic features at intensity, texture and morphology levels are extracted to discriminate infected and noninfected erythrocytes. In order to achieve subgroup of potential features, feature selection techniques, namely, F-statistic and information gain criteria are considered here for ranking. Finally, five different classifiers, namely, Naive Bayes, multilayer perceptron neural network, logistic regression, classification and regression tree (CART), RBF neural network have been trained and tested by 888 erythrocytes (infected and noninfected) for each features' subset. Performance evaluation of the proposed methodology shows that multilayer perceptron network provides higher accuracy for malaria-infected erythrocytes recognition and infected stage classification. Results show that top 90 features ranked by F-statistic (specificity: 98.64%, sensitivity: 100%, PPV: 99.73% and overall accuracy: 96.84%) and top 60 features ranked by information gain provides better results (specificity: 97.29%, sensitivity: 100%, PPV: 99.46% and overall accuracy: 96.73%) for malaria-infected stage classification. © 2014 The Authors Journal of Microscopy © 2014 Royal Microscopical Society.

Recent advances in quantitative analysis of fluid interfaces in multiphase fluid flow measured by synchrotron-based x-ray microtomography

NASA Astrophysics Data System (ADS)

Schlueter, S.; Sheppard, A.; Wildenschild, D.

2013-12-01

Imaging of fluid interfaces in three-dimensional porous media via x-ray microtomography is an efficient means to test thermodynamically derived predictions on the relationship between capillary pressure, fluid saturation and specific interfacial area (Pc-Sw-Anw) in partially saturated porous media. Various experimental studies exist to date that validate the uniqueness of the Pc-Sw-Anw relationship under static conditions and with current technological progress direct imaging of moving interfaces under dynamic conditions is also becoming available. Image acquisition and subsequent image processing currently involves many steps each prone to operator bias, like merging different scans of the same sample obtained at different beam energies into a single image or the generation of isosurfaces from the segmented multiphase image on which the interface properties are usually calculated. We demonstrate that with recent advancements in (i) image enhancement methods, (ii) multiphase segmentation methods and (iii) methods of structural analysis we can considerably decrease the time and cost of image acquisition and the uncertainty associated with the measurement of interfacial properties. In particular, we highlight three notorious problems in multiphase image processing and provide efficient solutions for each: (i) Due to noise, partial volume effects, and imbalanced volume fractions, automated histogram-based threshold detection methods frequently fail. However, these impairments can be mitigated with modern denoising methods, special treatment of gray value edges and adaptive histogram equilization, such that most of the standard methods for threshold detection (Otsu, fuzzy c-means, minimum error, maximum entropy) coincide at the same set of values. (ii) Partial volume effects due to blur may produce apparent water films around solid surfaces that alter the specific fluid-fluid interfacial area (Anw) considerably. In a synthetic test image some local segmentation methods like Bayesian Markov random field, converging active contours and watershed segmentation reduced the error in Anw associated with apparent water films from 21% to 6-11%. (iii) The generation of isosurfaces from the segmented data usually requires a lot of postprocessing in order to smooth the surface and check for consistency errors. This can be avoided by calculating specific interfacial areas directly on the segmented voxel image by means of Minkowski functionals which is highly efficient and less error prone.

Automatic segmentation of amyloid plaques in MR images using unsupervised SVM

PubMed Central

Iordanescu, Gheorghe; Venkatasubramanian, Palamadai N.; Wyrwicz, Alice M.

2011-01-01

Deposition of the β-amyloid peptide (Aβ) is an important pathological hallmark of Alzheimer’s disease (AD). However, reliable quantification of amyloid plaques in both human and animal brains remains a challenge. We present here a novel automatic plaque segmentation algorithm based on the intrinsic MR signal characteristics of plaques. This algorithm identifies plaque candidates in MR data by using watershed transform, which extracts regions with low intensities completely surrounded by higher intensity neighbors. These candidates are classified as plaque or non-plaque by an unsupervised learning method using features derived from the MR data intensity. The algorithm performance is validated by comparison with histology. We also demonstrate the algorithm’s ability to detect age-related changes in plaque load ex vivo in 5×FAD APP transgenic mice. To our knowledge, this work represents the first quantitative method for characterizing amyloid plaques in MRI data. The proposed method can be used to describe the spatio-temporal progression of amyloid deposition, which is necessary for understanding the evolution of plaque pathology in mouse models of AD and to evaluate the efficacy of emergent amyloid-targeting therapies in preclinical trials. PMID:22189675

Robust Segmentation of Embayments to Encompass Exposure and Changes in Constituent Load

EPA Science Inventory

Nutrient and contaminant loads from the watershed, atmosphere, and seaward boundary to an embayment continually change due to human activities and alterations in the trends of natural forcing. Nevertheless, residence time (a measure of exposure) is always viewed as an unchanging ...

Quantitative Analysis of Rat Dorsal Root Ganglion Neurons Cultured on Microelectrode Arrays Based on Fluorescence Microscopy Image Processing.

PubMed

Mari, João Fernando; Saito, José Hiroki; Neves, Amanda Ferreira; Lotufo, Celina Monteiro da Cruz; Destro-Filho, João-Batista; Nicoletti, Maria do Carmo

2015-12-01

Microelectrode Arrays (MEA) are devices for long term electrophysiological recording of extracellular spontaneous or evocated activities on in vitro neuron culture. This work proposes and develops a framework for quantitative and morphological analysis of neuron cultures on MEAs, by processing their corresponding images, acquired by fluorescence microscopy. The neurons are segmented from the fluorescence channel images using a combination of segmentation by thresholding, watershed transform, and object classification. The positioning of microelectrodes is obtained from the transmitted light channel images using the circular Hough transform. The proposed method was applied to images of dissociated culture of rat dorsal root ganglion (DRG) neuronal cells. The morphological and topological quantitative analysis carried out produced information regarding the state of culture, such as population count, neuron-to-neuron and neuron-to-microelectrode distances, soma morphologies, neuron sizes, neuron and microelectrode spatial distributions. Most of the analysis of microscopy images taken from neuronal cultures on MEA only consider simple qualitative analysis. Also, the proposed framework aims to standardize the image processing and to compute quantitative useful measures for integrated image-signal studies and further computational simulations. As results show, the implemented microelectrode identification method is robust and so are the implemented neuron segmentation and classification one (with a correct segmentation rate up to 84%). The quantitative information retrieved by the method is highly relevant to assist the integrated signal-image study of recorded electrophysiological signals as well as the physical aspects of the neuron culture on MEA. Although the experiments deal with DRG cell images, cortical and hippocampal cell images could also be processed with small adjustments in the image processing parameter estimation.

Conditioning geostatistical simulations of a heterogeneous paleo-fluvial bedrock aquifer using lithologs and pumping tests

NASA Astrophysics Data System (ADS)

Niazi, A.; Bentley, L. R.; Hayashi, M.

2016-12-01

Geostatistical simulations are used to construct heterogeneous aquifer models. Optimally, such simulations should be conditioned with both lithologic and hydraulic data. We introduce an approach to condition lithologic geostatistical simulations of a paleo-fluvial bedrock aquifer consisting of relatively high permeable sandstone channels embedded in relatively low permeable mudstone using hydraulic data. The hydraulic data consist of two-hour single well pumping tests extracted from the public water well database for a 250-km2 watershed in Alberta, Canada. First, lithologic models of the entire watershed are simulated and conditioned with hard lithological data using transition probability - Markov chain geostatistics (TPROGS). Then, a segment of the simulation around a pumping well is used to populate a flow model (FEFLOW) with either sand or mudstone. The values of the hydraulic conductivity and specific storage of sand and mudstone are then adjusted to minimize the difference between simulated and actual pumping test data using the parameter estimation program PEST. If the simulated pumping test data do not adequately match the measured data, the lithologic model is updated by locally deforming the lithology distribution using the probability perturbation method and the model parameters are again updated with PEST. This procedure is repeated until the simulated and measured data agree within a pre-determined tolerance. The procedure is repeated for each well that has pumping test data. The method creates a local groundwater model that honors both the lithologic model and pumping test data and provides estimates of hydraulic conductivity and specific storage. Eventually, the simulations will be integrated into a watershed-scale groundwater model.

Advances in variable selection methods II: Effect of variable selection method on classification of hydrologically similar watersheds in three Mid-Atlantic ecoregions

EPA Science Inventory

Hydrological flow predictions in ungauged and sparsely gauged watersheds use regionalization or classification of hydrologically similar watersheds to develop empirical relationships between hydrologic, climatic, and watershed variables. The watershed classifications may be based...

An automated approach to the segmentation of HEp-2 cells for the indirect immunofluorescence ANA test.

PubMed

Tonti, Simone; Di Cataldo, Santa; Bottino, Andrea; Ficarra, Elisa

2015-03-01

The automatization of the analysis of Indirect Immunofluorescence (IIF) images is of paramount importance for the diagnosis of autoimmune diseases. This paper proposes a solution to one of the most challenging steps of this process, the segmentation of HEp-2 cells, through an adaptive marker-controlled watershed approach. Our algorithm automatically conforms the marker selection pipeline to the peculiar characteristics of the input image, hence it is able to cope with different fluorescent intensities and staining patterns without any a priori knowledge. Furthermore, it shows a reduced sensitivity to over-segmentation errors and uneven illumination, that are typical issues of IIF imaging. Copyright © 2015 Elsevier Ltd. All rights reserved.

Spatial and seasonal dynamics of brook trout populations inhabiting a central Appalachian watershed

USGS Publications Warehouse

Petty, J.T.; Lamothe, P.J.; Mazik, P.M.

2005-01-01

We quantified the watershed-scale spatial population dynamics of brook trout Salvelinus fontinalis in the Second Fork, a third-order tributary of Shavers Fork in eastern West Virginia. We used visual surveys, electrofishing, and mark-recapture techniques to quantify brook trout spawning intensity, population density, size structure, and demographic rates (apparent survival and immigration) throughout the watershed. Our analyses produced the following results. Spawning by brook trout was concentrated in streams with small basin areas (i.e., segments draining less than 3 km2), relatively high alkalinity (>10 mg CaCO3/L), and high amounts of instream cover. The spatial distribution of juvenile and small-adult brook trout within the watershed was relatively stable and was significantly correlated with spawning intensity. However, no such relationship was observed for large adults, which exhibited highly variable distribution patterns related to seasonally important habitat features, including instream cover, stream depth and width, and riparian canopy cover. Brook trout survival and immigration rates varied seasonally, spatially, and among size-classes. Differential survival and immigration tended to concentrate juveniles and small adults in small, alkaline streams, whereas dispersal tended to redistribute large adults at the watershed scale. Our results suggest that spatial and temporal variations in spawning, survival, and movement interact to determine the distribution, abundance, and size structure of brook trout populations at a watershed scale. These results underscore the importance of small tributaries for the persistence of brook trout in this watershed and the need to consider watershed-scale processes when designing management plans for Appalachian brook trout populations. ?? Copyright by the American Fisheries Society 2005.

Changes in river water temperature between 1980 and 2012 in Yongan watershed, eastern China: Magnitude, drivers and models

NASA Astrophysics Data System (ADS)

Chen, Dingjiang; Hu, Minpeng; Guo, Yi; Dahlgren, Randy A.

2016-02-01

Climate warming is expected to have major impacts on river water quality, water column/hyporheic zone biogeochemistry and aquatic ecosystems. A quantitative understanding of spatio-temporal air (Ta) and water (Tw) temperature dynamics is required to guide river management and to facilitate adaptations to climate change. This study determined the magnitude, drivers and models for increasing Tw in three river segments of the Yongan watershed in eastern China. Over the 1980-2012 period, Tw in the watershed increased by 0.029-0.046 °C yr-1 due to a ∼0.050 °C yr-1 increase of Ta and changes in local human activities (e.g., increasing developed land and population density and decreasing forest area). A standardized multiple regression model was developed for predicting annual Tw (R2 = 0.88-0.91) and identifying/partitioning the impact of the principal drivers on increasing Tw:Ta (76 ± 1%), local human activities (14 ± 2%), and water discharge (10 ± 1%). After normalizing water discharge, climate warming and local human activities were estimated to contribute 81-95% and 5-19% of the observed rising Tw, respectively. Models forecast a 0.32-1.76 °C increase in Tw by 2050 compared with the 2000-2012 baseline condition based on four future scenarios. Heterogeneity of warming rates existed across seasons and river segments, with the lower flow river and dry season demonstrating a more pronounced response to climate warming and human activities. Rising Tw due to changes in climate, local human activities and hydrology has a considerable potential to aggravate river water quality degradation and coastal water eutrophication in summer. Thus it should be carefully considered in developing watershed management strategies in response to climate change.

Brain tumor classification of microscopy images using deep residual learning

NASA Astrophysics Data System (ADS)

Ishikawa, Yota; Washiya, Kiyotada; Aoki, Kota; Nagahashi, Hiroshi

2016-12-01

The crisis rate of brain tumor is about one point four in ten thousands. In general, cytotechnologists take charge of cytologic diagnosis. However, the number of cytotechnologists who can diagnose brain tumors is not sufficient, because of the necessity of highly specialized skill. Computer-Aided Diagnosis by computational image analysis may dissolve the shortage of experts and support objective pathological examinations. Our purpose is to support a diagnosis from a microscopy image of brain cortex and to identify brain tumor by medical image processing. In this study, we analyze Astrocytes that is a type of glia cell of central nerve system. It is not easy for an expert to discriminate brain tumor correctly since the difference between astrocytes and low grade astrocytoma (tumors formed from Astrocyte) is very slight. In this study, we present a novel method to segment cell regions robustly using BING objectness estimation and to classify brain tumors using deep convolutional neural networks (CNNs) constructed by deep residual learning. BING is a fast object detection method and we use pretrained BING model to detect brain cells. After that, we apply a sequence of post-processing like Voronoi diagram, binarization, watershed transform to obtain fine segmentation. For classification using CNNs, a usual way of data argumentation is applied to brain cells database. Experimental results showed 98.5% accuracy of classification and 98.2% accuracy of segmentation.

Integrated approach for prioritizing watersheds for management: a study of lidder catchment of kashmir himalayas.

PubMed

Malik, Mohammad Imran; Bhat, M Sultan

2014-12-01

The Himalayan watersheds are susceptible to various forms of degradation due to their sensitive and fragile ecological disposition coupled with increasing anthropogenic disturbances. Owing to the paucity of appropriate technology and financial resources, the prioritization of watersheds has become an inevitable process for effective planning and management of natural resources. Lidder catchment constitutes a segment of the western Himalayas with an area of 1,159.38 km(2). The study is based on integrated analysis of remote sensing, geographic information system, field study, and socioeconomic data. Multicriteria evaluation of geophysical, land-use and land-cover (LULC) change, and socioeconomic indicators is carried out to prioritize watersheds for natural resource conservation and management. Knowledge-based weights and ranks are normalized, and weighted linear combination technique is adopted to determine final priority value. The watersheds are classified into four priority zones (very high priority, high priority, medium priority, and low priority) on the basis of quartiles of the priority value, thus indicating their ecological status in terms of degradation caused by anthropogenic disturbances. The correlation between priority ranks of individual indicators and integrated indicators is drawn. The results reveal that socioeconomic indicators are the most important drivers of LULC change and environmental degradation in the catchment. Moreover, the magnitude and intensity of anthropogenic impact is not uniform in different watersheds of Lidder catchment. Therefore, any conservation and management strategy must be formulated on the basis of watershed prioritization.

Variable Streamflow Contributions in Nested Subwatersheds of a US Midwestern Urban Watershed

DOE PAGES

Wei, Liang; Hubbart, Jason A.; Zhou, Hang

2017-09-09

Quantification of runoff is critical to estimate and control water pollution in urban regions, but variation in impervious area and land-use type can complicate the quantification of runoff. We quantified the streamflow contributions of subwatersheds and the historical changes in streamflow in a flood prone urbanizing watershed in US Midwest to guide the establishment of a future pollution-control plan. Streamflow data from five nested hydrological stations enabled accurate estimations of streamflow contribution from five subwatersheds with variable impervious areas (from 0.5% to 26.6%). We corrected the impact of Missouri river backwatering at the most downstream station by comparing its streamflowmore » with an upstream station using double-mass analysis combined with Bernaola-Galvan Heuristic Segmentation approach. We also compared the streamflow of the urbanizing watershed with seven surrounding rural watersheds to estimate the cumulative impact of urbanization on the streamflow regime. The two most urbanized subwatersheds contributed >365 mm streamflow in 2012 with 657 mm precipitation, which was more than fourfold greater than the two least urbanized subwatersheds. Runoff occurred almost exclusively over the most urbanized subwatersheds during the dry period. The frequent floods occurred and the same amount of precipitation produced ~100 mm more streamflow in 2008–2014 than 1967–1980 in the urbanizing watershed; such phenomena did not occur in surrounding rural watersheds. Our approaches provide comprehensive information for planning on runoff control and pollutant reduction in urban watersheds.« less

Variable Streamflow Contributions in Nested Subwatersheds of a US Midwestern Urban Watershed

DOE Office of Scientific and Technical Information (OSTI.GOV)

Wei, Liang; Hubbart, Jason A.; Zhou, Hang

Quantification of runoff is critical to estimate and control water pollution in urban regions, but variation in impervious area and land-use type can complicate the quantification of runoff. We quantified the streamflow contributions of subwatersheds and the historical changes in streamflow in a flood prone urbanizing watershed in US Midwest to guide the establishment of a future pollution-control plan. Streamflow data from five nested hydrological stations enabled accurate estimations of streamflow contribution from five subwatersheds with variable impervious areas (from 0.5% to 26.6%). We corrected the impact of Missouri river backwatering at the most downstream station by comparing its streamflowmore » with an upstream station using double-mass analysis combined with Bernaola-Galvan Heuristic Segmentation approach. We also compared the streamflow of the urbanizing watershed with seven surrounding rural watersheds to estimate the cumulative impact of urbanization on the streamflow regime. The two most urbanized subwatersheds contributed >365 mm streamflow in 2012 with 657 mm precipitation, which was more than fourfold greater than the two least urbanized subwatersheds. Runoff occurred almost exclusively over the most urbanized subwatersheds during the dry period. The frequent floods occurred and the same amount of precipitation produced ~100 mm more streamflow in 2008–2014 than 1967–1980 in the urbanizing watershed; such phenomena did not occur in surrounding rural watersheds. Our approaches provide comprehensive information for planning on runoff control and pollutant reduction in urban watersheds.« less

Integrated Approach for Prioritizing Watersheds for Management: A Study of Lidder Catchment of Kashmir Himalayas

NASA Astrophysics Data System (ADS)

Malik, Mohammad Imran; Bhat, M. Sultan

2014-12-01

The Himalayan watersheds are susceptible to various forms of degradation due to their sensitive and fragile ecological disposition coupled with increasing anthropogenic disturbances. Owing to the paucity of appropriate technology and financial resources, the prioritization of watersheds has become an inevitable process for effective planning and management of natural resources. Lidder catchment constitutes a segment of the western Himalayas with an area of 1,159.38 km2. The study is based on integrated analysis of remote sensing, geographic information system, field study, and socioeconomic data. Multicriteria evaluation of geophysical, land-use and land-cover (LULC) change, and socioeconomic indicators is carried out to prioritize watersheds for natural resource conservation and management. Knowledge-based weights and ranks are normalized, and weighted linear combination technique is adopted to determine final priority value. The watersheds are classified into four priority zones (very high priority, high priority, medium priority, and low priority) on the basis of quartiles of the priority value, thus indicating their ecological status in terms of degradation caused by anthropogenic disturbances. The correlation between priority ranks of individual indicators and integrated indicators is drawn. The results reveal that socioeconomic indicators are the most important drivers of LULC change and environmental degradation in the catchment. Moreover, the magnitude and intensity of anthropogenic impact is not uniform in different watersheds of Lidder catchment. Therefore, any conservation and management strategy must be formulated on the basis of watershed prioritization.

Interactive contour delineation of organs at risk in radiotherapy: Clinical evaluation on NSCLC patients.

PubMed

Dolz, J; Kirişli, H A; Fechter, T; Karnitzki, S; Oehlke, O; Nestle, U; Vermandel, M; Massoptier, L

2016-05-01

Accurate delineation of organs at risk (OARs) on computed tomography (CT) image is required for radiation treatment planning (RTP). Manual delineation of OARs being time consuming and prone to high interobserver variability, many (semi-) automatic methods have been proposed. However, most of them are specific to a particular OAR. Here, an interactive computer-assisted system able to segment various OARs required for thoracic radiation therapy is introduced. Segmentation information (foreground and background seeds) is interactively added by the user in any of the three main orthogonal views of the CT volume and is subsequently propagated within the whole volume. The proposed method is based on the combination of watershed transformation and graph-cuts algorithm, which is used as a powerful optimization technique to minimize the energy function. The OARs considered for thoracic radiation therapy are the lungs, spinal cord, trachea, proximal bronchus tree, heart, and esophagus. The method was evaluated on multivendor CT datasets of 30 patients. Two radiation oncologists participated in the study and manual delineations from the original RTP were used as ground truth for evaluation. Delineation of the OARs obtained with the minimally interactive approach was approved to be usable for RTP in nearly 90% of the cases, excluding the esophagus, which segmentation was mostly rejected, thus leading to a gain of time ranging from 50% to 80% in RTP. Considering exclusively accepted cases, overall OARs, a Dice similarity coefficient higher than 0.7 and a Hausdorff distance below 10 mm with respect to the ground truth were achieved. In addition, the interobserver analysis did not highlight any statistically significant difference, at the exception of the segmentation of the heart, in terms of Hausdorff distance and volume difference. An interactive, accurate, fast, and easy-to-use computer-assisted system able to segment various OARs required for thoracic radiation therapy has been presented and clinically evaluated. The introduction of the proposed system in clinical routine may offer valuable new option to radiation oncologists in performing RTP.

Pre-operative segmentation of neck CT datasets for the planning of neck dissections

NASA Astrophysics Data System (ADS)

Cordes, Jeanette; Dornheim, Jana; Preim, Bernhard; Hertel, Ilka; Strauss, Gero

2006-03-01

For the pre-operative segmentation of CT neck datasets, we developed the software assistant NeckVision. The relevant anatomical structures for neck dissection planning can be segmented and the resulting patient-specific 3D-models are visualized afterwards in another software system for intervention planning. As a first step, we examined the appropriateness of elementary segmentation techniques based on gray values and contour information to extract the structures in the neck region from CT data. Region growing, interactive watershed transformation and live-wire are employed for segmentation of different target structures. It is also examined, which of the segmentation tasks can be automated. Based on this analysis, the software assistant NeckVision was developed to optimally support the workflow of image analysis for clinicians. The usability of NeckVision was tested within a first evaluation with four otorhinolaryngologists from the university hospital of Leipzig, four computer scientists from the university of Magdeburg and two laymen in both fields.

A Novel Defect Inspection Method for Semiconductor Wafer Based on Magneto-Optic Imaging

NASA Astrophysics Data System (ADS)

Pan, Z.; Chen, L.; Li, W.; Zhang, G.; Wu, P.

2013-03-01

The defects of semiconductor wafer may be generated from the manufacturing processes. A novel defect inspection method of semiconductor wafer is presented in this paper. The method is based on magneto-optic imaging, which involves inducing eddy current into the wafer under test, and detecting the magnetic flux associated with eddy current distribution in the wafer by exploiting the Faraday rotation effect. The magneto-optic image being generated may contain some noises that degrade the overall image quality, therefore, in this paper, in order to remove the unwanted noise present in the magneto-optic image, the image enhancement approach using multi-scale wavelet is presented, and the image segmentation approach based on the integration of watershed algorithm and clustering strategy is given. The experimental results show that many types of defects in wafer such as hole and scratch etc. can be detected by the method proposed in this paper.

GEOMORPHOLOGICAL STUDIES IN THE LITTLE MIAMI RIVER (INITIALLY, OTHER STREAM SYSTEMS TO BE ADDED LATER)

EPA Science Inventory

Changes in the amount and types of land use in a watershed can destabilize stream channel structure, increase sediment loading and degrade in-stream habitat. Stream classification systems (e.g., Rosgen) may be useful for determining the susceptibility of stream channel segments t...

77 FR 43046 - Lolo National Forest; Montana; Center Horse Landscape Restoration EIS

Federal Register 2010, 2011, 2012, 2013, 2014

2012-07-23

... construction (about 5 miles); (7) re-route 5 road segments to improve fish habitat; (8) add existing roads to... implement restoration activities, including vegetation management, road and trail management, and watershed... unneeded or environmentally impactive roads and trails. Proposed Action The Center Horse Landscape...

50 CFR 224.101 - Enumeration of endangered marine and anadromous species.

Code of Federal Regulations, 2010 CFR

2010-10-01

... salmon Salmo salar U.S.A., ME, Gulf of Maine Distinct Population Segment. The GOM DPS includes all anadromous Atlantic salmon whose freshwater range occurs in the watersheds from the Androscoggin River...). Excluded are landlocked salmon and those salmon raised in commercial hatcheries for aquaculture 65 FR 69469...

DRAINWAT--Based Methods For Estimating Nitrogen Transport in Poorly Drained Watersheds

Treesearch

Devendra M. Amatya; George M. Chescheir; Glenn P. Fernandez; R. Wayne Skaggs; J.W. Gilliam

2004-01-01

Methods are needed to quantify effects of land use and management practices on nutrient and sediment loads at the watershed scale. Two methods were used to apply a DRAINMOD-based watershed-scale model (DRAINWAT) to estimate total nitrogen (N) transport from a poorly drained, forested watershed. In both methods, in-stream retention or losses of N were calculated with a...

Automatic colonic lesion detection and tracking in endoscopic videos

NASA Astrophysics Data System (ADS)

Li, Wenjing; Gustafsson, Ulf; A-Rahim, Yoursif

2011-03-01

The biology of colorectal cancer offers an opportunity for both early detection and prevention. Compared with other imaging modalities, optical colonoscopy is the procedure of choice for simultaneous detection and removal of colonic polyps. Computer assisted screening makes it possible to assist physicians and potentially improve the accuracy of the diagnostic decision during the exam. This paper presents an unsupervised method to detect and track colonic lesions in endoscopic videos. The aim of the lesion screening and tracking is to facilitate detection of polyps and abnormal mucosa in real time as the physician is performing the procedure. For colonic lesion detection, the conventional marker controlled watershed based segmentation is used to segment the colonic lesions, followed by an adaptive ellipse fitting strategy to further validate the shape. For colonic lesion tracking, a mean shift tracker with background modeling is used to track the target region from the detection phase. The approach has been tested on colonoscopy videos acquired during regular colonoscopic procedures and demonstrated promising results.

New method for characterizing paper coating structures using argon ion beam milling and field emission scanning electron microscopy.

PubMed

Dahlström, C; Allem, R; Uesaka, T

2011-02-01

We have developed a new method for characterizing microstructures of paper coating using argon ion beam milling technique and field emission scanning electron microscopy. The combination of these two techniques produces extremely high-quality images with very few artefacts, which are particularly suited for quantitative analyses of coating structures. A new evaluation method has been developed by using marker-controlled watershed segmentation technique of the secondary electron images. The high-quality secondary electron images with well-defined pores makes it possible to use this semi-automatic segmentation method. One advantage of using secondary electron images instead of backscattered electron images is being able to avoid possible overestimation of the porosity because of the signal depth. A comparison was made between the new method and the conventional method using greyscale histogram thresholding of backscattered electron images. The results showed that the conventional method overestimated the pore area by 20% and detected around 5% more pores than the new method. As examples of the application of the new method, we have investigated the distributions of coating binders, and the relationship between local coating porosity and base sheet structures. The technique revealed, for the first time with direct evidence, the long-suspected coating non-uniformity, i.e. binder migration, and the correlation between coating porosity versus base sheet mass density, in a straightforward way. © 2010 The Authors Journal compilation © 2010 The Royal Microscopical Society.

Impact of Resolution on Simulation of Closed Mesoscale Cellular Convection Identified by Dynamically Guided Watershed Segmentation

DOE Office of Scientific and Technical Information (OSTI.GOV)

Martini, Matus N.; Gustafson, William I.; Yang, Qing

2014-11-18

Organized mesoscale cellular convection (MCC) is a common feature of marine stratocumulus that forms in response to a balance between mesoscale dynamics and smaller scale processes such as cloud radiative cooling and microphysics. We use the Weather Research and Forecasting model with chemistry (WRF-Chem) and fully coupled cloud-aerosol interactions to simulate marine low clouds during the VOCALS-REx campaign over the southeast Pacific. A suite of experiments with 3- and 9-km grid spacing indicates resolution-dependent behavior. The simulations with finer grid spacing have smaller liquid water paths and cloud fractions, while cloud tops are higher. The observed diurnal cycle is reasonablymore » well simulated. To isolate organized MCC characteristics we develop a new automated method, which uses a variation of the watershed segmentation technique that combines the detection of cloud boundaries with a test for coincident vertical velocity characteristics. This ensures that the detected cloud fields are dynamically consistent for closed MCC, the most common MCC type over the VOCALS-REx region. We demonstrate that the 3-km simulation is able to reproduce the scaling between horizontal cell size and boundary layer height seen in satellite observations. However, the 9-km simulation is unable to resolve smaller circulations corresponding to shallower boundary layers, instead producing invariant MCC horizontal scale for all simulated boundary layers depths. The results imply that climate models with grid spacing of roughly 3 km or smaller may be needed to properly simulate the MCC structure in the marine stratocumulus regions.« less

Classification of Acute Myelogenous Leukemia (AML M2 and AML M3) using Momentum Back Propagation from Watershed Distance Transform Segmented Images

NASA Astrophysics Data System (ADS)

Suryani, Esti; Wiharto; Palgunadi, Sarngadi; Nurcahya Pradana, TP

2017-01-01

This study uses image processing to analyze white blood cell with leukemia indicated that includes the identification, analysis of shapes and sizes, as well as white blood cell count indicated the symptoms of leukemia. A case study in this research was blood cells, from the type of leukemia Acute Myelogenous Leukemia (AML), M2 and M3 in particular. Image processing operations used for segmentation by utilizing the color conversion from RGB (Red, Green dab Blue) to obtain white blood cell candidates. Furthermore, the white blood cells candidates are separated by other cells with active contour without edge. WBC (White Blood Cell) results still have intersected or overlap condition. Watershed distance transform method can separate overlap of WBC. Furthermore, the separation of the nucleus from the cytoplasm using the HSI (Hue Saturation Intensity). The further characteristic extraction process is done by calculating the area WBC, WBC edge, roundness, the ratio of the nucleus, the mean and standard deviation of pixel intensities. The feature extraction results are used for training and testing in determining the classification of AML: M2 and M3 by using the momentum backpropagation algorithm. The classification process is done by testing the numeric data input from the feature extraction results that have been entered in the database. K-Fold validation is used to divide the amount of training data and to test the classification of AML M2 and M3. The experiment results of eight images trials, the result, was 94.285% per cell accuracy and 75% per image accuracy

Watershed Regressions for Pesticides (WARP) models for predicting stream concentrations of multiple pesticides

USGS Publications Warehouse

Stone, Wesley W.; Crawford, Charles G.; Gilliom, Robert J.

2013-01-01

Watershed Regressions for Pesticides for multiple pesticides (WARP-MP) are statistical models developed to predict concentration statistics for a wide range of pesticides in unmonitored streams. The WARP-MP models use the national atrazine WARP models in conjunction with an adjustment factor for each additional pesticide. The WARP-MP models perform best for pesticides with application timing and methods similar to those used with atrazine. For other pesticides, WARP-MP models tend to overpredict concentration statistics for the model development sites. For WARP and WARP-MP, the less-than-ideal sampling frequency for the model development sites leads to underestimation of the shorter-duration concentration; hence, the WARP models tend to underpredict 4- and 21-d maximum moving-average concentrations, with median errors ranging from 9 to 38% As a result of this sampling bias, pesticides that performed well with the model development sites are expected to have predictions that are biased low for these shorter-duration concentration statistics. The overprediction by WARP-MP apparent for some of the pesticides is variably offset by underestimation of the model development concentration statistics. Of the 112 pesticides used in the WARP-MP application to stream segments nationwide, 25 were predicted to have concentration statistics with a 50% or greater probability of exceeding one or more aquatic life benchmarks in one or more stream segments. Geographically, many of the modeled streams in the Corn Belt Region were predicted to have one or more pesticides that exceeded an aquatic life benchmark during 2009, indicating the potential vulnerability of streams in this region.

Analysis of regional rainfall-runoff parameters for the Lake Michigan Diversion hydrological modeling

USGS Publications Warehouse

Soong, David T.; Over, Thomas M.

2015-01-01

Recalibration of the HSPF parameters to the updated inputs and land covers was completed on two representative watershed models selected from the nine by using a manual method (HSPEXP) and an automatic method (PEST). The objective of the recalibration was to develop a regional parameter set that improves the accuracy in runoff volume prediction for the nine study watersheds. Knowledge about flow and watershed characteristics plays a vital role for validating the calibration in both manual and automatic methods. The best performing parameter set was determined by the automatic calibration method on a two-watershed model. Applying this newly determined parameter set to the nine watersheds for runoff volume simulation resulted in “very good” ratings in five watersheds, an improvement as compared to “very good” ratings achieved for three watersheds by the North Branch parameter set.

Development of An Empirical Water Quality Model for Stormwater Based on Watershed Land Use in Puget Sound

DOE Office of Scientific and Technical Information (OSTI.GOV)

Cullinan, Valerie I.; May, Christopher W.; Brandenberger, Jill M.

2007-03-29

The Sinclair and Dyes Inlet watershed is located on the west side of Puget Sound in Kitsap County, Washington, U.S.A. (Figure 1). The Puget Sound Naval Shipyard (PSNS), U.S Environmental Protection Agency (USEPA), the Washington State Department of Ecology (WA-DOE), Kitsap County, City of Bremerton, City of Bainbridge Island, City of Port Orchard, and the Suquamish Tribe have joined in a cooperative effort to evaluate water-quality conditions in the Sinclair-Dyes Inlet watershed and correct identified problems. A major focus of this project, known as Project ENVVEST, is to develop Water Clean-up (TMDL) Plans for constituents listed on the 303(d) listmore » within the Sinclair and Dyes Inlet watershed. Segments within the Sinclair and Dyes Inlet watershed were listed on the State of Washington’s 1998 303(d) because of fecal coliform contamination in marine water, metals in sediment and fish tissue, and organics in sediment and fish tissue (WA-DOE 2003). Stormwater loading was identified by ENVVEST as one potential source of sediment contamination, which lacked sufficient data for a contaminant mass balance calculation for the watershed. This paper summarizes the development of an empirical model for estimating contaminant concentrations in all streams discharging into Sinclair and Dyes Inlets based on watershed land use, 18 storm events, and wet/dry season baseflow conditions between November 2002 and May 2005. Stream pollutant concentrations along with estimates for outfalls and surface runoff will be used in estimating the loading and ultimately in establishing a Water Cleanup Plan (TMDL) for the Sinclair-Dyes Inlet watershed.« less

Unsupervised motion-based object segmentation refined by color

NASA Astrophysics Data System (ADS)

Piek, Matthijs C.; Braspenning, Ralph; Varekamp, Chris

2003-06-01

For various applications, such as data compression, structure from motion, medical imaging and video enhancement, there is a need for an algorithm that divides video sequences into independently moving objects. Because our focus is on video enhancement and structure from motion for consumer electronics, we strive for a low complexity solution. For still images, several approaches exist based on colour, but these lack in both speed and segmentation quality. For instance, colour-based watershed algorithms produce a so-called oversegmentation with many segments covering each single physical object. Other colour segmentation approaches exist which somehow limit the number of segments to reduce this oversegmentation problem. However, this often results in inaccurate edges or even missed objects. Most likely, colour is an inherently insufficient cue for real world object segmentation, because real world objects can display complex combinations of colours. For video sequences, however, an additional cue is available, namely the motion of objects. When different objects in a scene have different motion, the motion cue alone is often enough to reliably distinguish objects from one another and the background. However, because of the lack of sufficient resolution of efficient motion estimators, like the 3DRS block matcher, the resulting segmentation is not at pixel resolution, but at block resolution. Existing pixel resolution motion estimators are more sensitive to noise, suffer more from aperture problems or have less correspondence to the true motion of objects when compared to block-based approaches or are too computationally expensive. From its tendency to oversegmentation it is apparent that colour segmentation is particularly effective near edges of homogeneously coloured areas. On the other hand, block-based true motion estimation is particularly effective in heterogeneous areas, because heterogeneous areas improve the chance a block is unique and thus decrease the chance of the wrong position producing a good match. Consequently, a number of methods exist which combine motion and colour segmentation. These methods use colour segmentation as a base for the motion segmentation and estimation or perform an independent colour segmentation in parallel which is in some way combined with the motion segmentation. The presented method uses both techniques to complement each other by first segmenting on motion cues and then refining the segmentation with colour. To our knowledge few methods exist which adopt this approach. One example is te{meshrefine}. This method uses an irregular mesh, which hinders its efficient implementation in consumer electronics devices. Furthermore, the method produces a foreground/background segmentation, while our applications call for the segmentation of multiple objects. NEW METHOD As mentioned above we start with motion segmentation and refine the edges of this segmentation with a pixel resolution colour segmentation method afterwards. There are several reasons for this approach: + Motion segmentation does not produce the oversegmentation which colour segmentation methods normally produce, because objects are more likely to have colour discontinuities than motion discontinuities. In this way, the colour segmentation only has to be done at the edges of segments, confining the colour segmentation to a smaller part of the image. In such a part, it is more likely that the colour of an object is homogeneous. + This approach restricts the computationally expensive pixel resolution colour segmentation to a subset of the image. Together with the very efficient 3DRS motion estimation algorithm, this helps to reduce the computational complexity. + The motion cue alone is often enough to reliably distinguish objects from one another and the background. To obtain the motion vector fields, a variant of the 3DRS block-based motion estimator which analyses three frames of input was used. The 3DRS motion estimator is known for its ability to estimate motion vectors which closely resemble the true motion. BLOCK-BASED MOTION SEGMENTATION As mentioned above we start with a block-resolution segmentation based on motion vectors. The presented method is inspired by the well-known K-means segmentation method te{K-means}. Several other methods (e.g. te{kmeansc}) adapt K-means for connectedness by adding a weighted shape-error. This adds the additional difficulty of finding the correct weights for the shape-parameters. Also, these methods often bias one particular pre-defined shape. The presented method, which we call K-regions, encourages connectedness because only blocks at the edges of segments may be assigned to another segment. This constrains the segmentation method to such a degree that it allows the method to use least squares for the robust fitting of affine motion models for each segment. Contrary to te{parmkm}, the segmentation step still operates on vectors instead of model parameters. To make sure the segmentation is temporally consistent, the segmentation of the previous frame will be used as initialisation for every new frame. We also present a scheme which makes the algorithm independent of the initially chosen amount of segments. COLOUR-BASED INTRA-BLOCK SEGMENTATION The block resolution motion-based segmentation forms the starting point for the pixel resolution segmentation. The pixel resolution segmentation is obtained from the block resolution segmentation by reclassifying pixels only at the edges of clusters. We assume that an edge between two objects can be found in either one of two neighbouring blocks that belong to different clusters. This assumption allows us to do the pixel resolution segmentation on each pair of such neighbouring blocks separately. Because of the local nature of the segmentation, it largely avoids problems with heterogeneously coloured areas. Because no new segments are introduced in this step, it also does not suffer from oversegmentation problems. The presented method has no problems with bifurcations. For the pixel resolution segmentation itself we reclassify pixels such that we optimize an error norm which favour similarly coloured regions and straight edges. SEGMENTATION MEASURE To assist in the evaluation of the proposed algorithm we developed a quality metric. Because the problem does not have an exact specification, we decided to define a ground truth output which we find desirable for a given input. We define the measure for the segmentation quality as being how different the segmentation is from the ground truth. Our measure enables us to evaluate oversegmentation and undersegmentation seperately. Also, it allows us to evaluate which parts of a frame suffer from oversegmentation or undersegmentation. The proposed algorithm has been tested on several typical sequences. CONCLUSIONS In this abstract we presented a new video segmentation method which performs well in the segmentation of multiple independently moving foreground objects from each other and the background. It combines the strong points of both colour and motion segmentation in the way we expected. One of the weak points is that the segmentation method suffers from undersegmentation when adjacent objects display similar motion. In sequences with detailed backgrounds the segmentation will sometimes display noisy edges. Apart from these results, we think that some of the techniques, and in particular the K-regions technique, may be useful for other two-dimensional data segmentation problems.

Retrofitting for watershed drainage

DOE Office of Scientific and Technical Information (OSTI.GOV)

Bennett, D.B.; Heaney, J.P.

1991-09-01

Over the past 8 years, degradation in Florida's Indian River Lagoon has taken the form of fish kills, reduced viable recreational and commercial fisheries, and loss of seagrass beds. Stormwater drainage practices in the watershed have been identified as the primary culprit in the slow demise of the lagoon. Specific drainage problems include an increased volume of freshwater runoff to the estuarine receiving water and deposition of organic sediments, reduced water clarity because of increased discharge of suspended solids and tea colored' groundwater - a result of drainage-canal-induced land dewatering, and eutrophication caused by nutrient loadings. In addition, poor flushingmore » in lagoon segments makes runoff impacts even more damaging to the ecosystem. Recently, the lagoon has received national, regional, state, and local attention over its degradation and citizens' action and multi-agency efforts to restore it. To mitigate damage to the Indian River lagoon, agencies are considering alternatives such as retrofitting to reduce pollutant loads and implementing a more comprehensive watershed approach to stormwater management instead of individual controls on new development currently widely practiced. A comprehensive, long-term watershed control approach avoids unnecessary construction expenses, encourages cost-effective tradeoffs based on specific objectives, facilities performance monitoring, and accounts for cumulative impacts of continued growth in the watershed.« less

Mathematical morphology for automated analysis of remotely sensed objects in radar images

NASA Technical Reports Server (NTRS)

Daida, Jason M.; Vesecky, John F.

1991-01-01

A symbiosis of pyramidal segmentation and morphological transmission is described. The pyramidal segmentation portion of the symbiosis has resulted in low (2.6 percent) misclassification error rate for a one-look simulation. Other simulations indicate lower error rates (1.8 percent for a four-look image). The morphological transformation portion has resulted in meaningful partitions with a minimal loss of fractal boundary information. An unpublished version of Thicken, suitable for watersheds transformations of fractal objects, is also presented. It is demonstrated that the proposed symbiosis works with SAR (synthetic aperture radar) images: in this case, a four-look Seasat image of sea ice. It is concluded that the symbiotic forms of both segmentation and morphological transformation seem well suited for unsupervised geophysical analysis.

Large in-stream wood studies: A call for common metrics

Treesearch

Ellen Wohl; Daniel A. Cenderelli; Kathleen A. Dwire; Sandra E. Ryan-Burkett; Michael K. Young; Kurt D. Fausch

2010-01-01

During the past decade, research on large in-stream wood has expanded beyond North America's Pacific Northwest to diverse environments and has shifted toward increasingly holistic perspectives that incorporate processes of wood recruitment, retention, and loss at scales from channel segments to entire watersheds. Syntheses of this rapidly expanding literature can...

INVESTIGATING SURFACE WATER QUALITY IMPACTS ON GROUNDWATER QUALITY UNDER VARYING FLOW CONDITIONS IN THE BARTON SPRINGS SEGMENT OF THE EDWARDS AQUIFER, CENTRAL TEXAS

EPA Science Inventory

The expected results from this research include: i) the quantification of the proportion of surface water comprising spring discharge under varying flow conditions; ii) the characterization of surface watersheds under varying antecedent moisture conditions, and evaluation of ...

Interactive contour delineation of organs at risk in radiotherapy: Clinical evaluation on NSCLC patients

DOE Office of Scientific and Technical Information (OSTI.GOV)

Dolz, J., E-mail: jose.dolz.upv@gmail.com; Kirişli, H. A.; Massoptier, L.

2016-05-15

Purpose: Accurate delineation of organs at risk (OARs) on computed tomography (CT) image is required for radiation treatment planning (RTP). Manual delineation of OARs being time consuming and prone to high interobserver variability, many (semi-) automatic methods have been proposed. However, most of them are specific to a particular OAR. Here, an interactive computer-assisted system able to segment various OARs required for thoracic radiation therapy is introduced. Methods: Segmentation information (foreground and background seeds) is interactively added by the user in any of the three main orthogonal views of the CT volume and is subsequently propagated within the whole volume.more » The proposed method is based on the combination of watershed transformation and graph-cuts algorithm, which is used as a powerful optimization technique to minimize the energy function. The OARs considered for thoracic radiation therapy are the lungs, spinal cord, trachea, proximal bronchus tree, heart, and esophagus. The method was evaluated on multivendor CT datasets of 30 patients. Two radiation oncologists participated in the study and manual delineations from the original RTP were used as ground truth for evaluation. Results: Delineation of the OARs obtained with the minimally interactive approach was approved to be usable for RTP in nearly 90% of the cases, excluding the esophagus, which segmentation was mostly rejected, thus leading to a gain of time ranging from 50% to 80% in RTP. Considering exclusively accepted cases, overall OARs, a Dice similarity coefficient higher than 0.7 and a Hausdorff distance below 10 mm with respect to the ground truth were achieved. In addition, the interobserver analysis did not highlight any statistically significant difference, at the exception of the segmentation of the heart, in terms of Hausdorff distance and volume difference. Conclusions: An interactive, accurate, fast, and easy-to-use computer-assisted system able to segment various OARs required for thoracic radiation therapy has been presented and clinically evaluated. The introduction of the proposed system in clinical routine may offer valuable new option to radiation oncologists in performing RTP.« less

Quantification of Gravel Rural Road Sediment Production

NASA Astrophysics Data System (ADS)

Silliman, B. A.; Myers Toman, E.

2014-12-01

Unbound rural roads are thought to be one of the largest anthropogenic sources of sediment reaching stream channels in small watersheds. This sediment deposition can reduce water quality in the streams negatively impacting aquatic habitat as well as impacting municipal drinking water sources. These roads are thought to see an increase in construction and use in southeast Ohio due to the expansion of shale gas development in the region. This study set out to quantify the amount of sediment these rural roads are able to produce. A controlled rain event of 12.7 millimeters of rain over a half hour period was used to drive sediment production over a 0.03 kilometer section of gravel rural road. These 8 segments varied in many characteristics and produced from 2.0 to 8.4 kilograms of sediment per 0.03 kilometers of road with the average production over the 8 segments being 5.5 kilograms of sediment. Sediment production was not strongly correlated with road segment slope but traffic was found to increase sediment production from 1.1 to 3.9 times as much sediment after traffic use. These results will help inform watershed scale sediment budgeting, and inform best management practices for road maintenance and construction. This study also adds to the understanding of the impacts of rural road use and construction associated with the changing land use from agricultural to natural gas extraction.

Watershed assessment-watershed analysis: What are the limits and what must be considered

Treesearch

Robert R. Ziemer

2000-01-01

Watershed assessment or watershed analysis describes processes and interactions that influence ecosystems and resources in a watershed. Objectives and methods differ because issues and opportunities differ.

Characterizing Storm Event Dynamics of a Forested Watershed in the Lower Atlantic Coastal Plain, South Carolina USA

NASA Astrophysics Data System (ADS)

Latorre Torres, I. B.; Amatya, D. M.; Callahan, T. J.; Levine, N. S.

2007-12-01

Hydrology research in the Southeast U.S. has primarily focused on upland mountainous areas; however, much less is known about hydrological processes in Lower Coastal Plain (LCP) watersheds. Such watersheds are difficult to characterize due to shallow water table conditions, low topographic gradient, complex surface- subsurface water interaction, and lack of detailed soil information. Although opportunities to conduct long term monitoring in relatively undeveloped watersheds are often limited, stream flow and rainfall in the Turkey Creek watershed (third-order watershed, about 7200 ha in the Francis Marion National Forest near Charleston, SC) have been monitored since 1964. In this study, event runoff-rainfall ratios have been determined for 51 storm events using historical data from 1964-1973. One of our objectives was to characterize relationships between seasonal event rainfall and storm outflow in this watershed. To this end, observed storm event data were compared with values predicted by established hydrological methods such as the Soil Conservation Service runoff curve number (SCS-CN) and the rational method integrated within a Geographical Information System (GIS), to estimate total event runoff and peak discharge, respectively. Available 1:15000 scale aerial images were digitized to obtain land uses, which were used with the SCS soil hydrologic groups to obtain the runoff coefficients (C) for the rational method and the CN values for the SCS-CN method. These methods are being tested with historical storm event responses in the Turkey Creek watershed scale, and then will be used to predict event runoff in Quinby Creek, an ungauged third-order watershed (8700 ha) adjacent to Turkey Creek. Successful testing with refinement of parameters in the rational method and SCS-CN method, both designed for small urban and agricultural dominated watersheds, may allow widespread application of these methods for studying the event rainfall-runoff dynamics for similar watersheds in the Lower Coastal Plain of the Southeast U.S.

Survey of contemporary trends in color image segmentation

NASA Astrophysics Data System (ADS)

Vantaram, Sreenath Rao; Saber, Eli

2012-10-01

In recent years, the acquisition of image and video information for processing, analysis, understanding, and exploitation of the underlying content in various applications, ranging from remote sensing to biomedical imaging, has grown at an unprecedented rate. Analysis by human observers is quite laborious, tiresome, and time consuming, if not infeasible, given the large and continuously rising volume of data. Hence the need for systems capable of automatically and effectively analyzing the aforementioned imagery for a variety of uses that span the spectrum from homeland security to elderly care. In order to achieve the above, tools such as image segmentation provide the appropriate foundation for expediting and improving the effectiveness of subsequent high-level tasks by providing a condensed and pertinent representation of image information. We provide a comprehensive survey of color image segmentation strategies adopted over the last decade, though notable contributions in the gray scale domain will also be discussed. Our taxonomy of segmentation techniques is sampled from a wide spectrum of spatially blind (or feature-based) approaches such as clustering and histogram thresholding as well as spatially guided (or spatial domain-based) methods such as region growing/splitting/merging, energy-driven parametric/geometric active contours, supervised/unsupervised graph cuts, and watersheds, to name a few. In addition, qualitative and quantitative results of prominent algorithms on several images from the Berkeley segmentation dataset are shown in order to furnish a fair indication of the current quality of the state of the art. Finally, we provide a brief discussion on our current perspective of the field as well as its associated future trends.

Application of WATERSHED ECOLOGICAL RISK ASSESSMENT Methods to Watershed Management

EPA Science Inventory

Watersheds are frequently used to study and manage environmental resources because hydrologic boundaries define the flow of contaminants and other stressors. Ecological assessments of watersheds are complex because watersheds typically overlap multiple jurisdictional boundaries,...

Application of Watershed Ecological Risk Assessment Methods to Watershed Management

EPA Science Inventory

Watersheds are frequently used to study and manage environmental resources because hydrologic boundaries define the flow of contaminants and other stressors. Ecological assessments of watersheds are complex because watersheds typically overlap multiple jurisdictional boundaries,...

Classification of product inspection items using nonlinear features

NASA Astrophysics Data System (ADS)

Talukder, Ashit; Casasent, David P.; Lee, H.-W.

1998-03-01

Automated processing and classification of real-time x-ray images of randomly oriented touching pistachio nuts is discussed. The ultimate objective is the development of a system for automated non-invasive detection of defective product items on a conveyor belt. This approach involves two main steps: preprocessing and classification. Preprocessing locates individual items and segments ones that touch using a modified watershed algorithm. The second stage involves extraction of features that allow discrimination between damaged and clean items (pistachio nuts). This feature extraction and classification stage is the new aspect of this paper. We use a new nonlinear feature extraction scheme called the maximum representation and discriminating feature (MRDF) extraction method to compute nonlinear features that are used as inputs to a classifier. The MRDF is shown to provide better classification and a better ROC (receiver operating characteristic) curve than other methods.

Automatic Feature Extraction from Planetary Images

NASA Technical Reports Server (NTRS)

Troglio, Giulia; Le Moigne, Jacqueline; Benediktsson, Jon A.; Moser, Gabriele; Serpico, Sebastiano B.

2010-01-01

With the launch of several planetary missions in the last decade, a large amount of planetary images has already been acquired and much more will be available for analysis in the coming years. The image data need to be analyzed, preferably by automatic processing techniques because of the huge amount of data. Although many automatic feature extraction methods have been proposed and utilized for Earth remote sensing images, these methods are not always applicable to planetary data that often present low contrast and uneven illumination characteristics. Different methods have already been presented for crater extraction from planetary images, but the detection of other types of planetary features has not been addressed yet. Here, we propose a new unsupervised method for the extraction of different features from the surface of the analyzed planet, based on the combination of several image processing techniques, including a watershed segmentation and the generalized Hough Transform. The method has many applications, among which image registration and can be applied to arbitrary planetary images.

Using Caspar Creek flow records to test peak flow estimation methods applicable to crossing design

Treesearch

Peter H. Cafferata; Leslie M. Reid

2017-01-01

Long-term flow records from sub-watersheds in the Caspar Creek Experimental Watersheds were used to test the accuracy of four methods commonly used to estimate peak flows in small forested watersheds: the Rational Method, the updated USGS Magnitude and Frequency Method, flow transference methods, and the NRCS curve number method. Comparison of measured and calculated...

Tumor segmentation of multi-echo MR T2-weighted images with morphological operators

NASA Astrophysics Data System (ADS)

Torres, W.; Martín-Landrove, M.; Paluszny, M.; Figueroa, G.; Padilla, G.

2009-02-01

In the present work an automatic brain tumor segmentation procedure based on mathematical morphology is proposed. The approach considers sequences of eight multi-echo MR T2-weighted images. The relaxation time T2 characterizes the relaxation of water protons in the brain tissue: white matter, gray matter, cerebrospinal fluid (CSF) or pathological tissue. Image data is initially regularized by the application of a log-convex filter in order to adjust its geometrical properties to those of noiseless data, which exhibits monotonously decreasing convex behavior. Finally the regularized data is analyzed by means of an 8-dimensional morphological eccentricity filter. In a first stage, the filter was used for the spatial homogenization of the tissues in the image, replacing each pixel by the most representative pixel within its structuring element, i.e. the one which exhibits the minimum total distance to all members in the structuring element. On the filtered images, the relaxation time T2 is estimated by means of least square regression algorithm and the histogram of T2 is determined. The T2 histogram was partitioned using the watershed morphological operator; relaxation time classes were established and used for tissue classification and segmentation of the image. The method was validated on 15 sets of MRI data with excellent results.

The burial of headwater streams in drainage pipes reduces in-stream nitrate retention: results from two US metropolitan areas

EPA Science Inventory

Nitrogen (N) retention in stream networks is an important ecosystem service that may be affected by the widespread burial of headwater streams in urban watersheds. Stream burial occurs when segments of a channel are encased in drainage pipe and buried beneath the land surface to...

An Integrated Ecological Modeling System for Assessing ...

EPA Pesticide Factsheets

We demonstrate a novel, spatially explicit assessment of the current condition of aquatic ecosystem services, with limited sensitivity analysis for the atmospheric contaminant mercury. The Integrated Ecological Modeling System (IEMS) forecasts water quality and quantity, habitat suitability for aquatic biota, fish biomasses, population densities, productivities, and contamination by methylmercury across headwater watersheds. We applied this IEMS to the Coal River Basin (CRB), West Virginia (USA), an 8-digit hydrologic unit watershed, by simulating a network of 97 stream segments using the SWAT watershed model, a watershed mercury loading model, the WASP water quality model, the PiSCES fish community estimation model, a fish habitat suitability model, the BASS fish community and bioaccumulation model, and an ecoservices post-processer. Model application was facilitated by automated data retrieval and model setup and updated model wrappers and interfaces for data transfers between these models from a prior study. This companion study evaluates baseline predictions of ecoservices provided for 1990 – 2010 for the population of streams in the CRB and serves as a foundation for future model development. Published in the journal, Ecological Modeling. Highlights: • Demonstrate a spatially-explicit IEMS for multiple scales. • Design a flexible IEMS for

Hydrological and pesticide transfer modeling in a tropical volcanic watershed with the WATPPASS model

NASA Astrophysics Data System (ADS)

Mottes, Charles; Lesueur-Jannoyer, Magalie; Charlier, Jean-Baptiste; Carles, Céline; Guéné, Mathilde; Le Bail, Marianne; Malézieux, Eric

2015-10-01

Simulation of flows and pollutant transfers in heterogeneous media is widely recognized to be a remaining frontier in hydrology research. We present a new modeling approach to simulate agricultural pollutions in watersheds: WATPPASS, a model for Watershed Agricultural Techniques and Pesticide Practices ASSessment. It is designed to assess mean pesticide concentrations and loads that result from the use of pesticides in horticultural watersheds located on heterogeneous subsoil. WATPPASS is suited for small watershed with significant groundwater flows and complex aquifer systems. The model segments the watershed into fields with independent hydrological and pesticide transfers at the ground surface. Infiltrated water and pesticides are routed toward outlet using a conceptual reservoir model. We applied WATPPASS on a heterogeneous tropical volcanic watershed of Martinique in the French West Indies. We carried out and hydrological analysis that defined modeling constraints: (i) a spatial variability of runoff/infiltration partitioning according to land use, and (ii) a predominance of groundwater flow paths in two overlapping aquifers under permeable soils (50-60% of annual flows). We carried out simulations on a 550 days period at a daily time step for hydrology (Nashsqrt > 0.75). Weekly concentrations and loads of a persistent organic pesticide (chlordecone) were simulated for 67 weeks to evaluate the modeling approach. Pesticide simulations without specific calibration detected the mean long-term measured concentration, leading to a good quantification of the cumulative loads (5% error), but failed to represent the concentration peaks at the correct timing. Nevertheless, we succeed in adjusting the model structure to better represent the temporal dynamic of pesticide concentrations. This modification requires a proper evaluation on an independent dataset. Finally, WATPPASS is a compromise between complexity and easiness of use that makes it suited for cropping system assessment in complex pedological and geological environment.

Robustness of Radiomic Features in [11C]Choline and [18F]FDG PET/CT Imaging of Nasopharyngeal Carcinoma: Impact of Segmentation and Discretization.

PubMed

Lu, Lijun; Lv, Wenbing; Jiang, Jun; Ma, Jianhua; Feng, Qianjin; Rahmim, Arman; Chen, Wufan

2016-12-01

Radiomic features are increasingly utilized to evaluate tumor heterogeneity in PET imaging and to enable enhanced prediction of therapy response and outcome. An important ingredient to success in translation of radiomic features to clinical reality is to quantify and ascertain their robustness. In the present work, we studied the impact of segmentation and discretization on 88 radiomic features in 2-deoxy-2-[ 18 F]fluoro-D-glucose ([ 18 F]FDG) and [ 11 C]methyl-choline ([ 11 C]choline) positron emission tomography/X-ray computed tomography (PET/CT) imaging of nasopharyngeal carcinoma. Forty patients underwent [ 18 F]FDG PET/CT scans. Of these, nine patients were imaged on a different day utilizing [ 11 C]choline PET/CT. Tumors were delineated using reference manual segmentation by the consensus of three expert physicians, using 41, 50, and 70 % maximum standardized uptake value (SUV max ) threshold with background correction, Nestle's method, and watershed and region growing methods, and then discretized with fixed bin size (0.05, 0.1, 0.2, 0.5, and 1) in units of SUV. A total of 88 features, including 21 first-order intensity features, 10 shape features, and 57 second- and higher-order textural features, were extracted from the tumors. The robustness of the features was evaluated via the intraclass correlation coefficient (ICC) for seven kinds of segmentation methods (involving all 88 features) and five kinds of discretization bin size (involving the 57 second- and higher-order features). Forty-four (50 %) and 55 (63 %) features depicted ICC ≥0.8 with respect to segmentation as obtained from [ 18 F]FDG and [ 11 C]choline, respectively. Thirteen (23 %) and 12 (21 %) features showed ICC ≥0.8 with respect to discretization as obtained from [ 18 F]FDG and [ 11 C]choline, respectively. Six features were obtained from both [ 18 F]FDG and [ 11 C]choline having ICC ≥0.8 for both segmentation and discretization, five of which were gray-level co-occurrence matrix (GLCM) features (SumEntropy, Entropy, DifEntropy, Homogeneity1, and Homogeneity2) and one of which was an neighborhood gray-tone different matrix (NGTDM) feature (Coarseness). Discretization generated larger effects on features than segmentation in both tracers. Features extracted from [ 11 C]choline were more robust than [ 18 F]FDG for segmentation. Discretization had very similar effects on features extracted from both tracers.

Automatic segmentation of vessels in in-vivo ultrasound scans

NASA Astrophysics Data System (ADS)

Tamimi-Sarnikowski, Philip; Brink-Kjær, Andreas; Moshavegh, Ramin; Arendt Jensen, Jørgen

2017-03-01

Ultrasound has become highly popular to monitor atherosclerosis, by scanning the carotid artery. The screening involves measuring the thickness of the vessel wall and diameter of the lumen. An automatic segmentation of the vessel lumen, can enable the determination of lumen diameter. This paper presents a fully automatic segmentation algorithm, for robustly segmenting the vessel lumen in longitudinal B-mode ultrasound images. The automatic segmentation is performed using a combination of B-mode and power Doppler images. The proposed algorithm includes a series of preprocessing steps, and performs a vessel segmentation by use of the marker-controlled watershed transform. The ultrasound images used in the study were acquired using the bk3000 ultrasound scanner (BK Ultrasound, Herlev, Denmark) with two transducers "8L2 Linear" and "10L2w Wide Linear" (BK Ultrasound, Herlev, Denmark). The algorithm was evaluated empirically and applied to a dataset of in-vivo 1770 images recorded from 8 healthy subjects. The segmentation results were compared to manual delineation performed by two experienced users. The results showed a sensitivity and specificity of 90.41+/-11.2 % and 97.93+/-5.7% (mean+/-standard deviation), respectively. The amount of overlap of segmentation and manual segmentation, was measured by the Dice similarity coefficient, which was 91.25+/-11.6%. The empirical results demonstrated the feasibility of segmenting the vessel lumen in ultrasound scans using a fully automatic algorithm.

Uncertainty quantification of fiber orientation distribution measurements for long-fiber-reinforced thermoplastic composites

DOE Office of Scientific and Technical Information (OSTI.GOV)

Sharma, Bhisham N.; Naragani, Diwakar; Nguyen, Ba Nghiep

We present a detailed methodology for experimental measurement of fiber orientation distribution (FOD) in injection-molded discontinuous fiber composites using the method of ellipses on 2D cross sections. Best practices to avoid biases occurring during surface preparation and optical imaging of carbon-fiber-reinforced thermoplastics are discussed. A marker-based watershed transform routine for efficient image segmentation and the separation of touching fiber ellipses is developed. The sensitivity of the averaged orientation tensor to the image sample size is studied for the case of long-fiber thermoplastics. A Mori-Tanaka implementation of the Eshelby model is then employed to quantify the sensitivity of elastic stiffness predictionsmore » to biases in the FOD measurements.« less

Uncertainty quantification of fiber orientation distribution measurements for long-fiber-reinforced thermoplastic composites

DOE Office of Scientific and Technical Information (OSTI.GOV)

Sharma, Bhisham N.; Naragani, Diwakar; Nguyen, Ba Nghiep

Here, we present a detailed methodology for experimental measurement of fiber orientation distribution in injection-molded discontinuous fiber composites using the method of ellipses on two-dimensional cross sections. Best practices to avoid biases occurring during surface preparation and optical imaging of carbon-fiber-reinforced thermoplastics are discussed. We developed a marker-based watershed transform routine for efficient image segmentation and the separation of touching fiber ellipses. The sensitivity of the averaged orientation tensor to the image sample size is studied for the case of long-fiber thermoplastics. A Mori–Tanaka implementation of the Eshelby model is then employed to quantify the sensitivity of elastic stiffness predictionsmore » to biases in the fiber orientation distribution measurements.« less

Uncertainty quantification of fiber orientation distribution measurements for long-fiber-reinforced thermoplastic composites

DOE PAGES

Sharma, Bhisham N.; Naragani, Diwakar; Nguyen, Ba Nghiep; ...

2017-09-28

Here, we present a detailed methodology for experimental measurement of fiber orientation distribution in injection-molded discontinuous fiber composites using the method of ellipses on two-dimensional cross sections. Best practices to avoid biases occurring during surface preparation and optical imaging of carbon-fiber-reinforced thermoplastics are discussed. We developed a marker-based watershed transform routine for efficient image segmentation and the separation of touching fiber ellipses. The sensitivity of the averaged orientation tensor to the image sample size is studied for the case of long-fiber thermoplastics. A Mori–Tanaka implementation of the Eshelby model is then employed to quantify the sensitivity of elastic stiffness predictionsmore » to biases in the fiber orientation distribution measurements.« less

Part 1: Principles of Urban Watershed Forestry

Treesearch

Karen Cappiella; Tom Schueler; Tiffany Wright

2005-01-01

Conserving forests in a watershed? This manual introduces the emerging topic of urban watershed forestry and presents new methods for systematically measuring watershed forest cover and techniques for maintaining or increasing this cover. The audience for this manual includes the local watershed planner or forester.

Evaluating the impact of field-scale management strategies on sediment transport to the watershed outlet.

PubMed

Sommerlot, Andrew R; Pouyan Nejadhashemi, A; Woznicki, Sean A; Prohaska, Michael D

2013-10-15

Non-point source pollution from agricultural lands is a significant contributor of sediment pollution in United States lakes and streams. Therefore, quantifying the impact of individual field management strategies at the watershed-scale provides valuable information to watershed managers and conservation agencies to enhance decision-making. In this study, four methods employing some of the most cited models in field and watershed scale analysis were compared to find a practical yet accurate method for evaluating field management strategies at the watershed outlet. The models used in this study including field-scale model (the Revised Universal Soil Loss Equation 2 - RUSLE2), spatially explicit overland sediment delivery models (SEDMOD), and a watershed-scale model (Soil and Water Assessment Tool - SWAT). These models were used to develop four modeling strategies (methods) for the River Raisin watershed: Method 1) predefined field-scale subbasin and reach layers were used in SWAT model; Method 2) subbasin-scale sediment delivery ratio was employed; Method 3) results obtained from the field-scale RUSLE2 model were incorporated as point source inputs to the SWAT watershed model; and Method 4) a hybrid solution combining analyses from the RUSLE2, SEDMOD, and SWAT models. Method 4 was selected as the most accurate among the studied methods. In addition, the effectiveness of six best management practices (BMPs) in terms of the water quality improvement and associated cost were assessed. Economic analysis was performed using Method 4, and producer requested prices for BMPs were compared with prices defined by the Environmental Quality Incentives Program (EQIP). On a per unit area basis, producers requested higher prices than EQIP in four out of six BMP categories. Meanwhile, the true cost of sediment reduction at the field and watershed scales was greater than EQIP in five of six BMP categories according to producer requested prices. Copyright © 2013 Elsevier Ltd. All rights reserved.

Spatial Analysis of Large Woody Debris Arrangement in a Midwestern U.S. River System: Geomorphic Implications and Influences

NASA Astrophysics Data System (ADS)

Martin, D. J.

2013-12-01

Large woody debris (LWD) is universally recognized as a key component of the geomorphological and ecological function of fluvial systems and has been increasingly incorporated into stream restoration and watershed management projects. However, 'natural' processes of recruitment and the subsequent arrangement of LWD within the river network are poorly understood and are thus, rarely a management consideration. Additionally, LWD research tends to be regionally biased toward mountainous regions, and scale biased toward the micro-scale. In many locations, the lack of understanding has led to the failure of restoration/rehabilitation projects that involved the use of LWD. This research uses geographic information systems and spatial analysis techniques to investigate longitudinal arrangement patterns of LWD in a low-gradient, Midwestern river. A large-scale GPS inventory of LWD was performed on the Big River, located in the eastern Missouri Ozarks resulting in over 5,000 logged positions of LWD along seven river segments covering nearly 100 km of the 237 km river system. A time series analysis framework was used to statistically identify longitudinal spatial patterns of LWD arrangement along the main stem of the river, and correlation analyses were performed to help identify physical controls of those patterns. Results indicate that upstream segments have slightly lower densities than downstream segments, with the exception of the farthest upstream segment. Results also show lack of an overall longitudinal trend in LWD density; however, periodogram analysis revealed an inherent periodicity in LWD arrangement. Periodicities were most evident in the downstream segments with frequencies ranging from 3 km to 7 km. Additionally, Pearson correlation analysis, performed within the segment displaying the strongest periodic behavior, show that LWD densities are correlated with channel sinuosity (r=0.25). Ongoing research is investigating further relationships between arrangement patterns and geomorphic and riparian variables. Understanding these spatial patterns and relationships will provide valuable insight into the application of LWD-related stream and watershed management practices, and fill a necessary regional knowledge gap in our understanding of LWD's role in fluvial processes.

ERF1_2 -- Enhanced River Reach File 2.0

USGS Publications Warehouse

Nolan, Jacqueline V.; Brakebill, John W.; Alexander, Richard B.; Schwarz, Gregory E.

2003-01-01

The digital segmented network based on watershed boundaries, ERF1_2, includes enhancements to the U.S. Environmental Protection Agency's River Reach File 1 (RF1) (USEPA, 1996; DeWald and others, 1985) to support national and regional-scale surface water-quality modeling. Alexander and others (1999) developed ERF1, which assessed the hydrologic integrity of the digital reach traces and calculated the mean water time-of-travel in river reaches and reservoirs. ERF1_2 serves as the foundation for SPARROW (Spatially Referenced Regressions (of nutrient transport) on Watershed) modeling. Within the context of a Geographic Information System, SPARROW estimates the proportion of watersheds in the conterminous U.S. with outflow concentrations of several nutrients, including total nitrogen and total phosphorus, (Smith, R.A., Schwarz, G.E., and Alexander, R.B., 1997). This version of the network expands on ERF1 (Version 1.2; Alexander, et al., 1999) and includes the incremental and total drainage area derived from 1-kilometer (km) elevation data for North America. Previous estimates of the water time-of-travel were recomputed for reaches with water-quality monitoring sites that included two reaches. The mean flow and velocity estimates for these split reaches are based on previous estimation methods (Alexander et al., 1999) and are unchanged in ERF1_2. Drainage area calculations provide data used to estimate the contribution of a given nutrient to the outflow. Data estimates depend on the accuracy of node connectivity. Reaches split at water-quality or pesticide-monitoring sites indicate the source point for estimating the contribution and transport of nutrients and their loads throughout the watersheds. The ERF1_2 coverage extends the earlier drainage area founded on the 1-kilometer data for North America (Verdin, 1996; Verdin and Jenson, 1996). A 1-kilometer raster grid of ERF1_2 projected to Lambert Azimuthal Equal Area, NAD 27 Datum (Snyder, 1987), was merged with the HYDRO1K flow direction data set (Verdin and Jenson, 1996) to generate a DEM-based watershed grid, ERF1_2WS_LG. The watershed boundaries are maintained in a raster (grid cell) format as well as a vector (polygon) format for subsequent model analysis. Both the coverage, ERF1_2, and the grid, ERF1_2WS_LG, are available at: URL:http://water.usgs.gov/lookup/getspatial?erf1_2

Estimating watershed level nonagricultural pesticide use from golf courses using geospatial methods

USGS Publications Warehouse

Fox, G.A.; Thelin, G.P.; Sabbagh, G.J.; Fuchs, J.W.; Kelly, I.D.

2008-01-01

Limited information exists on pesticide use for nonagricultural purposes, making it difficult to estimate pesticide loadings from nonagricultural sources to surface water and to conduct environmental risk assessments. A method was developed to estimate the amount of pesticide use on recreational turf grasses, specifically golf course turf grasses, for watersheds located throughout the conterminous United States (U.S.). The approach estimates pesticide use: (1) based on the area of recreational turf grasses (used as a surrogate for turf associated with golf courses) within the watershed, which was derived from maps of land cover, and (2) from data on the location and average treatable area of golf courses. The area of golf course turf grasses determined from these two methods was used to calculate the percentage of each watershed planted in golf course turf grass (percent crop area, or PCA). Turf-grass PCAs derived from the two methods were used with recommended application rates provided on pesticide labels to estimate total pesticide use on recreational turf within 1,606 watersheds associated with surface-water sources of drinking water. These pesticide use estimates made from label rates and PCAs were compared to use estimates from industry sales data on the amount of each pesticide sold for use within the watershed. The PCAs derived from the land-cover data had an average value of 0.4% of a watershed with minimum of 0.01% and a maximum of 9.8%, whereas the PCA values that are based on the number of golf courses in a watershed had an average of 0.3% of a watershed with a minimum of <0.01% and a maximum of 14.2%. Both the land-cover method and the number of golf courses method produced similar PCA distributions, suggesting that either technique may be used to provide a PCA estimate for recreational turf. The average and maximum PCAs generally correlated to watershed size, with the highest PCAs estimated for small watersheds. Using watershed specific PCAs, combined with label rates, resulted in greater than two orders of magnitude over-estimation of the pesticide use compared to estimates from sales data. ?? 2008 American Water Resources Association.

Simulation of Surface Erosion on a Logging Road in the Jackson Demonstration State Forest

Treesearch

Teresa Ish; David Tomberlin

2007-01-01

In constructing management models for the control of sediment delivery to streams, we have used a simulation model of road surface erosion known as the Watershed Erosion Prediction Project (WEPP) model, developed by the USDA Forest Service. This model predicts discharge, erosion, and sediment delivery at the road segment level, based on a stochastic climate simulator...

Charcterization of meadow ecosystems based on watershed and valley segment/reach scale characteristics [chapter 7

Treesearch

Wendy Trowbridge; Jeanne C. Chambers; Dru Germanoski; Mark L. Lord; Jerry R. Miller; David G. Jewett

2011-01-01

Great Basin riparian meadows are highly sensitive to both natural and anthropogenic disturbance. As detailed in earlier chapters, streams in the central Great Basin have a natural tendency to incise due to their geomorphic history (Miller and others 2001, 2004). Anthropogenic disturbances, including overgrazing by livestock, mining activities, and roads in the valley...

The challenges in developing the WEPP cumulative effects model

Treesearch

William J. Elliot; Randy B. Foltz

2003-01-01

Many of the forests in the U.S. and elsewhere in the world are source areas for water. The quantity and quality of this water are major public concerns. In a forested watershed, any road segment, harvesting operation, or other management activity can adversely impact forest streams. These disturbances are distributed in both time and space. The disturbance in the first...

Differentiating invasive and pre-invasive lung cancer by quantitative analysis of histopathologic images

NASA Astrophysics Data System (ADS)

Zhou, Chuan; Sun, Hongliu; Chan, Heang-Ping; Chughtai, Aamer; Wei, Jun; Hadjiiski, Lubomir; Kazerooni, Ella

2018-02-01

We are developing automated radiopathomics method for diagnosis of lung nodule subtypes. In this study, we investigated the feasibility of using quantitative methods to analyze the tumor nuclei and cytoplasm in pathologic wholeslide images for the classification of pathologic subtypes of invasive nodules and pre-invasive nodules. We developed a multiscale blob detection method with watershed transform (MBD-WT) to segment the tumor cells. Pathomic features were extracted to characterize the size, morphology, sharpness, and gray level variation in each segmented nucleus and the heterogeneity patterns of tumor nuclei and cytoplasm. With permission of the National Lung Screening Trial (NLST) project, a data set containing 90 digital haematoxylin and eosin (HE) whole-slide images from 48 cases was used in this study. The 48 cases contain 77 regions of invasive subtypes and 43 regions of pre-invasive subtypes outlined by a pathologist on the HE images using the pathological tumor region description provided by NLST as reference. A logistic regression model (LRM) was built using leave-one-case-out resampling and receiver operating characteristic (ROC) analysis for classification of invasive and pre-invasive subtypes. With 11 selected features, the LRM achieved a test area under the ROC curve (AUC) value of 0.91+/-0.03. The results demonstrated that the pathologic invasiveness of lung adenocarcinomas could be categorized with high accuracy using pathomics analysis.

IDENTIFICATION OF SEDIMENT SOURCE AREAS WITHIN A WATERSHED

EPA Science Inventory

Two methods, one using a travel time approach and the other based on optimization techniques, were developed to identify sediment generating areas within a watershed. Both methods rely on hydrograph and sedimentograph data collected at the mouth of the watershed. Data from severa...

Automated segmentation and feature extraction of product inspection items

NASA Astrophysics Data System (ADS)

Talukder, Ashit; Casasent, David P.

1997-03-01

X-ray film and linescan images of pistachio nuts on conveyor trays for product inspection are considered. The final objective is the categorization of pistachios into good, blemished and infested nuts. A crucial step before classification is the separation of touching products and the extraction of features essential for classification. This paper addresses new detection and segmentation algorithms to isolate touching or overlapping items. These algorithms employ a new filter, a new watershed algorithm, and morphological processing to produce nutmeat-only images. Tests on a large database of x-ray film and real-time x-ray linescan images of around 2900 small, medium and large nuts showed excellent segmentation results. A new technique to detect and segment dark regions in nutmeat images is also presented and tested on approximately 300 x-ray film and approximately 300 real-time linescan x-ray images with 95-97 percent detection and correct segmentation. New algorithms are described that determine nutmeat fill ratio and locate splits in nutmeat. The techniques formulated in this paper are of general use in many different product inspection and computer vision problems.

Morphological operation based dense houses extraction from DSM

NASA Astrophysics Data System (ADS)

Li, Y.; Zhu, L.; Tachibana, K.; Shimamura, H.

2014-08-01

This paper presents a method of reshaping and extraction of markers and masks of the dense houses from the DSM based on mathematical morphology (MM). Houses in a digital surface model (DSM) are almost joined together in high-density housing areas, and most segmentation methods cannot completely separate them. We propose to label the markers of the buildings firstly and segment them into masks by watershed then. To avoid detecting more than one marker for a house or no marker at all due to its higher neighbour, the DSM is morphologically reshaped. It is carried out by a MM operation using the certain disk shape SE of the similar size to the houses. The sizes of the houses need to be estimated before reshaping. A granulometry generated by opening-by-reconstruction to the NDSM is proposed to detect the scales of the off-terrain objects. It is a histogram of the global volume of the top hats of the convex objects in the continuous scales. The obvious step change in the profile means that there are many objects of similar sizes occur at this scale. In reshaping procedure, the slices of the object are derived by morphological filtering at the detected continuous scales and reconstructed in pile as the dome. The markers are detected on the basis of the domes.

Development of Relations of Stream Stage to Channel Geometry and Discharge for Stream Segments Simulated with Hydrologic Simulation Program-Fortran (HSPF), Chesapeake Bay Watershed and Adjacent Parts of Virginia, Maryland, and Delaware

USGS Publications Warehouse

Moyer, Douglas; Bennett, Mark

2007-01-01

The U.S. Geological Survey (USGS), U.S. Environmental Protection Agency (USEPA), Chesapeake Bay Program (CBP), Interstate Commission for the Potomac River Basin (ICPRB), Maryland Department of the Environment (MDE), Virginia Department of Conservation and Recreation (VADCR), and University of Maryland (UMD) are collaborating to improve the resolution of the Chesapeake Bay Regional Watershed Model (CBRWM). This watershed model uses the Hydrologic Simulation Program-Fortran (HSPF) to simulate the fate and transport of nutrients and sediment throughout the Chesapeake Bay watershed and extended areas of Virginia, Maryland, and Delaware. Information from the CBRWM is used by the CBP and other watershed managers to assess the effectiveness of water-quality improvement efforts as well as guide future management activities. A critical step in the improvement of the CBRWM framework was the development of an HSPF function table (FTABLE) for each represented stream channel. The FTABLE is used to relate stage (water depth) in a particular stream channel to associated channel surface area, channel volume, and discharge (streamflow). The primary tool used to generate an FTABLE for each stream channel is the XSECT program, a computer program that requires nine input variables used to represent channel morphology. These input variables are reach length, upstream and downstream elevation, channel bottom width, channel bankfull width, channel bankfull stage, slope of the floodplain, and Manning's roughness coefficient for the channel and floodplain. For the purpose of this study, the nine input variables were grouped into three categories: channel geometry, Manning's roughness coefficient, and channel and floodplain slope. Values of channel geometry for every stream segment represented in CBRWM were obtained by first developing regional regression models that relate basin drainage area to observed values of bankfull width, bankfull depth, and bottom width at each of the 290 USGS streamflow-gaging stations included in the areal extent of the model. These regression models were developed on the basis of data from stations in four physiographic provinces (Appalachian Plateaus, Valley and Ridge, Piedmont, and Coastal Plain) and were used to predict channel geometry for all 738 stream segments in the modeled area from associated basin drainage area. Manning's roughness coefficient for the channel and floodplain was represented in the XSECT program in two forms. First, all available field-estimated values of roughness were compiled for gaging stations in each physiographic province. The median of field-estimated values of channel and floodplain roughness for each physiographic province was applied to all respective stream segments. The second representation of Manning's roughness coefficient was to allow roughness to vary with channel depth. Roughness was estimated at each gaging station for each 1-foot depth interval. Median values of roughness were calculated for each 1-foot depth interval for all stations in each physiographic province. Channel and floodplain slope were determined for every stream segment in CBRWM using the USGS National Elevation Dataset. Function tables were generated by the XSECT program using values of channel geometry, channel and floodplain roughness, and channel and floodplain slope. The FTABLEs for each of the 290 USGS streamflow-gaging stations were evaluated by comparing observed discharge to the XSECT-derived discharge. Function table stream discharge derived using depth-varying roughness was found to be more representative of and statistically indistinguishable from values of observed stream discharge. Additionally, results of regression analysis showed that XSECT-derived discharge accounted for approximately 90 percent of the variability associated with observed discharge in each of the four physiographic provinces. The results of this study indicate that the methodology developed to generate FTABLEs for every s

The algorithm study for using the back propagation neural network in CT image segmentation

NASA Astrophysics Data System (ADS)

Zhang, Peng; Liu, Jie; Chen, Chen; Li, Ying Qi

2017-01-01

Back propagation neural network(BP neural network) is a type of multi-layer feed forward network which spread positively, while the error spread backwardly. Since BP network has advantages in learning and storing the mapping between a large number of input and output layers without complex mathematical equations to describe the mapping relationship, it is most widely used. BP can iteratively compute the weight coefficients and thresholds of the network based on the training and back propagation of samples, which can minimize the error sum of squares of the network. Since the boundary of the computed tomography (CT) heart images is usually discontinuous, and it exist large changes in the volume and boundary of heart images, The conventional segmentation such as region growing and watershed algorithm can't achieve satisfactory results. Meanwhile, there are large differences between the diastolic and systolic images. The conventional methods can't accurately classify the two cases. In this paper, we introduced BP to handle the segmentation of heart images. We segmented a large amount of CT images artificially to obtain the samples, and the BP network was trained based on these samples. To acquire the appropriate BP network for the segmentation of heart images, we normalized the heart images, and extract the gray-level information of the heart. Then the boundary of the images was input into the network to compare the differences between the theoretical output and the actual output, and we reinput the errors into the BP network to modify the weight coefficients of layers. Through a large amount of training, the BP network tend to be stable, and the weight coefficients of layers can be determined, which means the relationship between the CT images and the boundary of heart.

Workshop: Economic Research and Policy Concerning Water Use and Watershed Management (1999)

EPA Pesticide Factsheets

Workshop proceedings: Integrating Economic and Physical Models in Water and Watershed Research, Methods for Measuring Stakeholder Values of Water Quality and Watershed Protection, and Applications of Stakeholder Valuation Techniques for Watersheds and WQ

Water quality of Cisadane River based on watershed segmentation

NASA Astrophysics Data System (ADS)

Effendi, Hefni; Ayu Permatasari, Prita; Muslimah, Sri; Mursalin

2018-05-01

The growth of population and industrialization combined with land development along river cause water pollution and environmental deterioration. Cisadane River is one of the river in Indonesia where urbanization, industrialization, and agricultural are extremely main sources of pollution. Cisadane River is an interesting case for investigating the effect of land use to water quality and comparing water quality in every river segment. The main objectives with this study were to examine if there is a correlation between land use and water quality in Cisadane River and there is a difference in water quality between the upstream section of Cisadane River compared with its downstream section. This study compared water quality with land use condition in each segment of river. Land use classification showed that river segment that has more undeveloped area has better water quality compared to river segment with developed area. in general, BOD and COD values have increased from upstream to downstream. However, BOD and COD values do not show a steady increase in each segment Water quality is closely related to the surrounding land use.Therefore, it can not be concluded that the water quality downstream is worse than in the upstream area.

Volunteer Watershed Health Monitoring by Local Stakeholders: New Mexico Watershed Watch

ERIC Educational Resources Information Center

Fleming, William

2003-01-01

Volunteers monitor watershed health in more than 700 programs in the US, involving over 400,000 local stakeholders. New Mexico Watershed Watch is a student-based watershed monitoring program sponsored by the state's Department of Game and Fish which provides high school teachers and students with instruction on methods for water quality…

WATERSHED AND OTHER PLACE-BASED RISK ASSESSMENTS

EPA Science Inventory

Place-based assessments include regional, watershed and other geographically focused assessments.

Watershed Assessments and Methods

An Auxiliary Method To Reduce Potential Adverse Impacts Of Projected Land Developments: Subwatershed Prioritization

EPA Science Inventory

An index based method is developed that ranks the subwatersheds of a watershed based on their relative impacts on watershed response to anticipated land developments, and then applied to an urbanizing watershed in Eastern Pennsylvania. Simulations with a semi-distributed hydrolo...

Building Virtual Watersheds: A Global Opportunity to Strengthen Resource Management and Conservation.

PubMed

Benda, Lee; Miller, Daniel; Barquin, Jose; McCleary, Richard; Cai, TiJiu; Ji, Y

2016-03-01

Modern land-use planning and conservation strategies at landscape to country scales worldwide require complete and accurate digital representations of river networks, encompassing all channels including the smallest headwaters. The digital river networks, integrated with widely available digital elevation models, also need to have analytical capabilities to support resource management and conservation, including attributing river segments with key stream and watershed data, characterizing topography to identify landforms, discretizing land uses at scales necessary to identify human-environment interactions, and connecting channels downstream and upstream, and to terrestrial environments. We investigate the completeness and analytical capabilities of national to regional scale digital river networks that are available in five countries: Canada, China, Russia, Spain, and United States using actual resource management and conservation projects involving 12 university, agency, and NGO organizations. In addition, we review one pan-European and one global digital river network. Based on our analysis, we conclude that the majority of the regional, national, and global scale digital river networks in our sample lack in network completeness, analytical capabilities or both. To address this limitation, we outline a general framework to build as complete as possible digital river networks and to integrate them with available digital elevation models to create robust analytical capabilities (e.g., virtual watersheds). We believe this presents a global opportunity for in-country agencies, or international players, to support creation of virtual watersheds to increase environmental problem solving, broaden access to the watershed sciences, and strengthen resource management and conservation in countries worldwide.

Building Virtual Watersheds: A Global Opportunity to Strengthen Resource Management and Conservation

NASA Astrophysics Data System (ADS)

Benda, Lee; Miller, Daniel; Barquin, Jose; McCleary, Richard; Cai, TiJiu; Ji, Y.

2016-03-01

Modern land-use planning and conservation strategies at landscape to country scales worldwide require complete and accurate digital representations of river networks, encompassing all channels including the smallest headwaters. The digital river networks, integrated with widely available digital elevation models, also need to have analytical capabilities to support resource management and conservation, including attributing river segments with key stream and watershed data, characterizing topography to identify landforms, discretizing land uses at scales necessary to identify human-environment interactions, and connecting channels downstream and upstream, and to terrestrial environments. We investigate the completeness and analytical capabilities of national to regional scale digital river networks that are available in five countries: Canada, China, Russia, Spain, and United States using actual resource management and conservation projects involving 12 university, agency, and NGO organizations. In addition, we review one pan-European and one global digital river network. Based on our analysis, we conclude that the majority of the regional, national, and global scale digital river networks in our sample lack in network completeness, analytical capabilities or both. To address this limitation, we outline a general framework to build as complete as possible digital river networks and to integrate them with available digital elevation models to create robust analytical capabilities (e.g., virtual watersheds). We believe this presents a global opportunity for in-country agencies, or international players, to support creation of virtual watersheds to increase environmental problem solving, broaden access to the watershed sciences, and strengthen resource management and conservation in countries worldwide.

Curve Numbers for Nine Mountainous Eastern United States Watersheds: Seasonal Variation and Forest Cutting

EPA Science Inventory

Many engineers and hydrologists use the curve number method to estimate runoff from ungaged watersheds; however, the method does not explicitly account for the influence of season or forest cutting on runoff. This study of observed rainfall and runoff for small, forested watershe...

[Study on objectively evaluating skin aging according to areas of skin texture].

PubMed

Shan, Gaixin; Gan, Ping; He, Ling; Sun, Lu; Li, Qiannan; Jiang, Zheng; He, Xiangqian

2015-02-01

Skin aging principles play important roles in skin disease diagnosis, the evaluation of skin cosmetic effect, forensic identification and age identification in sports competition, etc. This paper proposes a new method to evaluate the skin aging objectively and quantitatively by skin texture area. Firstly, the enlarged skin image was acquired. Then, the skin texture image was segmented by using the iterative threshold method, and the skin ridge image was extracted according to the watershed algorithm. Finally, the skin ridge areas of the skin texture were extracted. The experiment data showed that the average areas of skin ridges, of both men and women, had a good correlation with age (the correlation coefficient r of male was 0.938, and the correlation coefficient r of female was 0.922), and skin texture area and age regression curve showed that the skin texture area increased with age. Therefore, it is effective to evaluate skin aging objectively by the new method presented in this paper.

A Coupled Approach with Stochastic Rainfall-Runoff Simulation and Hydraulic Modeling for Extreme Flood Estimation on Large Watersheds

NASA Astrophysics Data System (ADS)

Paquet, E.

2015-12-01

The SCHADEX method aims at estimating the distribution of peak and daily discharges up to extreme quantiles. It couples a precipitation probabilistic model based on weather patterns, with a stochastic rainfall-runoff simulation process using a conceptual lumped model. It allows exploring an exhaustive set of hydrological conditions and watershed responses to intense rainfall events. Since 2006, it has been widely applied in France to about one hundred watersheds for dam spillway design, and also aboard (Norway, Canada and central Europe among others). However, its application to large watersheds (above 10 000 km²) faces some significant issues: spatial heterogeneity of rainfall and hydrological processes and flood peak damping due to hydraulic effects (flood plains, natural or man-made embankment) being the more important. This led to the development of an extreme flood simulation framework for large and heterogeneous watersheds, based on the SCHADEX method. Its main features are: Division of the large (or main) watershed into several smaller sub-watersheds, where the spatial homogeneity of the hydro-meteorological processes can reasonably be assumed, and where the hydraulic effects can be neglected. Identification of pilot watersheds where discharge data are available, thus where rainfall-runoff models can be calibrated. They will be parameters donors to non-gauged watersheds. Spatially coherent stochastic simulations for all the sub-watersheds at the daily time step. Identification of a selection of simulated events for a given return period (according to the distribution of runoff volumes at the scale of the main watershed). Generation of the complete hourly hydrographs at each of the sub-watersheds outlets. Routing to the main outlet with hydraulic 1D or 2D models. The presentation will be illustrated with the case-study of the Isère watershed (9981 km), a French snow-driven watershed. The main novelties of this method will be underlined, as well as its perspectives and future improvements.

Research on Coupling Method of Watershed Initial Water Rights Allocation in Daling River

NASA Astrophysics Data System (ADS)

Liu, J.; Fengping, W.

2016-12-01

Water scarcity is now a common occurrence in many countries. The situation of watershed initial water rights allocation has caused many benefit conflicts among regions and regional water sectors of domestic and ecology environment and industries in China. This study aims to investigate the method of watershed initial water rights allocation in the perspective of coupling in Daling River Watershed taking provincial initial water rights and watershed-level governmental reserved water as objects. First of all, regarding the allocation subsystem of initial water rights among provinces, this research calculates initial water rights of different provinces by establishing the coupling model of water quantity and quality on the principle of "rewarding efficiency and penalizing inefficiency" based on the two control objectives of water quantity and quality. Secondly, regarding the allocation subsystem of watershed-level governmental reserved water rights, the study forecasts the demand of watershed-level governmental reserved water rights by the combination of case-based reasoning and water supply quotas. Then, the bilaterally coupled allocation model on water supply and demand is designed after supply analysis to get watershed-level governmental reserved water rights. The results of research method applied to Daling River Watershed reveal the recommended scheme of watershed initial water rights allocation based on coordinated degree criterion. It's found that the feasibility of the iteration coupling model and put forward related policies and suggestions. This study owns the advantages of complying with watershed initial water rights allocation mechanism and meeting the control requirements of water quantity, water quality and water utilization efficiency, which help to achieve the effective allocation of water resources.

Calibration of a Physically-Based Semi-Distributed Hydrologic Model: The Importance of Internal Justification

NASA Astrophysics Data System (ADS)

Tasdighi, A.; Arabi, M.

2014-12-01

Calibration of physically-based distributed hydrologic models has always been a challenging task and subject of controversy in the literature. This study is aimed to investigate how different physiographic characteristics of watersheds call for adaption of the methods used in order to have more robust and internally justifiable simulations. Haw Watershed (1300 sq. mi.) is located in the piedmont region of North Carolina draining into B. Everett Jordan Lake located in west of Raleigh. Major land covers in this watershed are forest (50%), urban/suburban (21%) and agriculture (25%) of which a large portion is pasture. Different hydrologic behaviors are observed in this watershed based on the land use composition and size of the sub-watersheds. Highly urbanized sub-watersheds show flashier hydrographs and near instantaneous hydrologic responses. This is also the case with smaller sub-watersheds with relatively lower percentage of urban areas. The Soil and Water Assessment Tool (SWAT) has been widely used in the literature for hydrologic simulation on daily basis using Soil Conservation Service Curve Number method (SCS CN). However, it has not been used as frequently using the sub-daily routines. In this regard there are a number of studies in the literature which have used coarse time scale (daily) precipitation with methods like SCS CN to calibrate SWAT for watersheds containing different types of land uses and soils reporting satisfying results at the outlet of the watershed. This is while for physically-based distributed models, the more important concern should be to check and analyze the internal processes leading to those results. In this study, the watershed is divided into several sub-watersheds to compare the performance of SCS CN and Green & Ampt (GA) methods on different land uses at different spatial scales. The results suggest better performance of GA compared to SCS CN for smaller and highly urbanized sub-watersheds although GA predominance is not very significant for the latter. Also, the better performance of GA in simulating the peak flows and flashy behavior of the hydrographs is notable. GA did not show a significant improvement over SCS CN in simulating the excess rainfall for larger sub-watersheds.

Automated delineation and characterization of watersheds for more than 3,000 surface-water-quality monitoring stations active in 2010 in Texas

USGS Publications Warehouse

Archuleta, Christy-Ann M.; Gonzales, Sophia L.; Maltby, David R.

2012-01-01

The U.S. Geological Survey (USGS), in cooperation with the Texas Commission on Environmental Quality, developed computer scripts and applications to automate the delineation of watershed boundaries and compute watershed characteristics for more than 3,000 surface-water-quality monitoring stations in Texas that were active during 2010. Microsoft Visual Basic applications were developed using ArcGIS ArcObjects to format the source input data required to delineate watershed boundaries. Several automated scripts and tools were developed or used to calculate watershed characteristics using Python, Microsoft Visual Basic, and the RivEX tool. Automated methods were augmented by the use of manual methods, including those done using ArcMap software. Watershed boundaries delineated for the monitoring stations are limited to the extent of the Subbasin boundaries in the USGS Watershed Boundary Dataset, which may not include the total watershed boundary from the monitoring station to the headwaters.

Fort Cobb Reservoir Watershed, Oklahoma and Thika River Watershed, Kenya Twinning Pilot Project

NASA Astrophysics Data System (ADS)

Moriasi, D.; Steiner, J.; Arnold, J.; Allen, P.; Dunbar, J.; Shisanya, C.; Gathenya, J.; Nyaoro, J.; Sang, J.

2007-12-01

The Fort Cobb Reservoir Watershed (FCRW) (830 km2) is a watershed within the HELP Washita Basin, located in Caddo and Washita Counties, OK. It is also a benchmark watershed under USDA's Conservation Effects Assessment Project, a national project to quantify environmental effects of USDA and other conservation programs. Population in south-western Oklahoma, in which FCRW is located, is sparse and decreasing. Agricultural focuses on commodity production (beef, wheat, and row crops) with high costs and low margins. Surface and groundwater resources supply public, domestic, and irrigation water. Fort Cobb Reservoir and contributing stream segments are listed on the Oklahoma 303(d) list as not meeting water quality standards based on sedimentation, trophic level of the lake associated with phosphorus loads, and nitrogen in some stream segments in some seasons. Preliminary results from a rapid geomorphic assessment results indicated that unstable stream channels dominate the stream networks and make a significant but unknown contribution to suspended-sediment loadings. Impairment of the lake for municipal water supply, recreation, and fish and wildlife are important factors in local economies. The Thika River Watershed (TRW) (867 km2) is located in central Kenya. Population in TRW is high and increasing, which has led to a poor land-population ratio with population densities ranging from 250 people/km2 to over 500 people/km2. The poor land-population ratio has resulted in land sub-division, fragmentation, over- cultivation, overgrazing, and deforestation which have serious implications on soil erosion, which poses a threat to both agricultural production and downstream reservoirs. Agricultural focuses mainly on subsistence and some cash crops (dairy cattle, corn, beans, coffee, floriculture and pineapple) farming. Surface and groundwater resources supply domestic, public, and hydroelectric power generation water. Thika River supplies 80% of the water for the city of Nairobi. A dam was constructed in 1994 with a water reservoir of 70 million m3. Thika River also supplies water to Masinga Reservoir to supply the seven forks dams, which together supply 75% of the nation's electricity. The quantity of water in rivers and reservoirs is decreased due to sedimentation while water quality is degraded by sediments, and sediment-borne nutrients and pesticides. The focus of this pilot twinning project is watershed erosion and reservoir sedimentation assessment. This will be accomplished by (1) a rapid watershed/catchment erosion assessment using ground based measurements and remote sensing/GIS techniques, 2) use of Acoustic Profiling Systems (APS) for reservoir sedimentation measurement studies, and 3) advanced water quality modeling using the soil and water assessment tool (SWAT) model. Data acquired will be used for sediment transport modeling to1) determine sediment "hot spots" and management practices that will minimize sediments into reservoirs in order to 2) maintain the reservoirs on which many farmers depend for their livelihood and a cleaner environment. This project will provide an opportunity for 1) sharing knowledge and experience among the stakeholders, 2) building capacity through formal and informal education opportunities through reciprocal hosting of decision makers and water experts, and 3) technology transfer of pilot results with recommended management practices to reduce reservoir sedimentation rates.

Runoff potentiality of a watershed through SCS and functional data analysis technique.

PubMed

Adham, M I; Shirazi, S M; Othman, F; Rahman, S; Yusop, Z; Ismail, Z

2014-01-01

Runoff potentiality of a watershed was assessed based on identifying curve number (CN), soil conservation service (SCS), and functional data analysis (FDA) techniques. Daily discrete rainfall data were collected from weather stations in the study area and analyzed through lowess method for smoothing curve. As runoff data represents a periodic pattern in each watershed, Fourier series was introduced to fit the smooth curve of eight watersheds. Seven terms of Fourier series were introduced for the watersheds 5 and 8, while 8 terms of Fourier series were used for the rest of the watersheds for the best fit of data. Bootstrapping smooth curve analysis reveals that watersheds 1, 2, 3, 6, 7, and 8 are with monthly mean runoffs of 29, 24, 22, 23, 26, and 27 mm, respectively, and these watersheds would likely contribute to surface runoff in the study area. The purpose of this study was to transform runoff data into a smooth curve for representing the surface runoff pattern and mean runoff of each watershed through statistical method. This study provides information of runoff potentiality of each watershed and also provides input data for hydrological modeling.

Runoff Potentiality of a Watershed through SCS and Functional Data Analysis Technique

PubMed Central

Adham, M. I.; Shirazi, S. M.; Othman, F.; Rahman, S.; Yusop, Z.; Ismail, Z.

2014-01-01

Runoff potentiality of a watershed was assessed based on identifying curve number (CN), soil conservation service (SCS), and functional data analysis (FDA) techniques. Daily discrete rainfall data were collected from weather stations in the study area and analyzed through lowess method for smoothing curve. As runoff data represents a periodic pattern in each watershed, Fourier series was introduced to fit the smooth curve of eight watersheds. Seven terms of Fourier series were introduced for the watersheds 5 and 8, while 8 terms of Fourier series were used for the rest of the watersheds for the best fit of data. Bootstrapping smooth curve analysis reveals that watersheds 1, 2, 3, 6, 7, and 8 are with monthly mean runoffs of 29, 24, 22, 23, 26, and 27 mm, respectively, and these watersheds would likely contribute to surface runoff in the study area. The purpose of this study was to transform runoff data into a smooth curve for representing the surface runoff pattern and mean runoff of each watershed through statistical method. This study provides information of runoff potentiality of each watershed and also provides input data for hydrological modeling. PMID:25152911

Multi-Feature Based Information Extraction of Urban Green Space Along Road

NASA Astrophysics Data System (ADS)

Zhao, H. H.; Guan, H. Y.

2018-04-01

Green space along road of QuickBird image was studied in this paper based on multi-feature-marks in frequency domain. The magnitude spectrum of green along road was analysed, and the recognition marks of the tonal feature, contour feature and the road were built up by the distribution of frequency channels. Gabor filters in frequency domain were used to detect the features based on the recognition marks built up. The detected features were combined as the multi-feature-marks, and watershed based image segmentation were conducted to complete the extraction of green space along roads. The segmentation results were evaluated by Fmeasure with P = 0.7605, R = 0.7639, F = 0.7622.

Valuing the effects of hydropower development on watershed ecosystem services: Case studies in the Jiulong River Watershed, Fujian Province, China

NASA Astrophysics Data System (ADS)

Wang, Guihua; Fang, Qinhua; Zhang, Luoping; Chen, Weiqi; Chen, Zhenming; Hong, Huasheng

2010-02-01

Hydropower development brings many negative impacts on watershed ecosystems which are not fully integrated into current decision-making largely because in practice few accept the cost and benefit beyond market. In this paper, a framework was proposed to valuate the effects on watershed ecosystem services caused by hydropower development. Watershed ecosystem services were classified into four categories of provisioning, regulating, cultural and supporting services; then effects on watershed ecosystem services caused by hydropower development were identified to 21 indicators. Thereafter various evaluation techniques including the market value method, opportunity cost approach, project restoration method, travel cost method, and contingent valuation method were determined and the models were developed to valuate these indicators reflecting specific watershed ecosystem services. This approach was applied to three representative hydropower projects (Daguan, Xizaikou and Tiangong) of Jiulong River Watershed in southeast China. It was concluded that for hydropower development: (1) the value ratio of negative impacts to positive benefits ranges from 64.09% to 91.18%, indicating that the negative impacts of hydropower development should be critically studied during its environmental administration process; (2) the biodiversity loss and water quality degradation (together accounting for 80-94%) are the major negative impacts on watershed ecosystem services; (3) the average environmental cost per unit of electricity is up to 0.206 Yuan/kW h, which is about three quarters of its on-grid power tariff; and (4) the current water resource fee accounts for only about 4% of its negative impacts value, therefore a new compensatory method by paying for ecosystem services is necessary for sustainable hydropower development. These findings provide a clear picture of both positive and negative effects of hydropower development for decision-makers in the monetary term, and also provide a basis for further design of environmental instrument such as payment for watershed ecosystem services.

The Great Lakes Hydrography Dataset: Consistent, binational ...

EPA Pesticide Factsheets

Ecosystem-based management of the Laurentian Great Lakes, which spans both the United States and Canada, is hampered by the lack of consistent binational watersheds for the entire Basin. Using comparable data sources and consistent methods we developed spatially equivalent watershed boundaries for the binational extent of the Basin to create the Great Lakes Hydrography Dataset (GLHD). The GLHD consists of 5,589 watersheds for the entire Basin, covering a total area of approximately 547,967 km2, or about twice the 247,003 km2 surface water area of the Great Lakes. The GLHD improves upon existing watershed efforts by delineating watersheds for the entire Basin using consistent methods; enhancing the precision of watershed delineation by using recently developed flow direction grids that have been hydrologically enforced and vetted by provincial and federal water resource agencies; and increasing the accuracy of watershed boundaries by enforcing embayments, delineating watersheds on islands, and delineating watersheds for all tributaries draining to connecting channels. In addition, the GLHD is packaged in a publically available geodatabase that includes synthetic stream networks, reach catchments, watershed boundaries, a broad set of attribute data for each tributary, and metadata documenting methodology. The GLHD provides a common set of watersheds and associated hydrography data for the Basin that will enhance binational efforts to protect and restore the Great

GIS Based Distributed Runoff Predictions in Variable Source Area Watersheds Employing the SCS-Curve Number

NASA Astrophysics Data System (ADS)

Steenhuis, T. S.; Mendoza, G.; Lyon, S. W.; Gerard Marchant, P.; Walter, M. T.; Schneiderman, E.

2003-04-01

Because the traditional Soil Conservation Service Curve Number (SCS-CN) approach continues to be ubiquitously used in GIS-BASED water quality models, new application methods are needed that are consistent with variable source area (VSA) hydrological processes in the landscape. We developed within an integrated GIS modeling environment a distributed approach for applying the traditional SCS-CN equation to watersheds where VSA hydrology is a dominant process. Spatial representation of hydrologic processes is important for watershed planning because restricting potentially polluting activities from runoff source areas is fundamental to controlling non-point source pollution. The methodology presented here uses the traditional SCS-CN method to predict runoff volume and spatial extent of saturated areas and uses a topographic index to distribute runoff source areas through watersheds. The resulting distributed CN-VSA method was incorporated in an existing GWLF water quality model and applied to sub-watersheds of the Delaware basin in the Catskill Mountains region of New York State. We found that the distributed CN-VSA approach provided a physically-based method that gives realistic results for watersheds with VSA hydrology.

Application of the PROMETHEE technique to determine depression outlet location and flow direction in DEM

NASA Astrophysics Data System (ADS)

Chou, Tien-Yin; Lin, Wen-Tzu; Lin, Chao-Yuan; Chou, Wen-Chieh; Huang, Pi-Hui

2004-02-01

With the fast growing progress of computer technologies, spatial information on watersheds such as flow direction, watershed boundaries and the drainage network can be automatically calculated or extracted from a digital elevation model (DEM). The stubborn problem that depressions exist in DEMs has been frequently encountered while extracting the spatial information of terrain. Several filling-up methods have been proposed for solving depressions. However, their suitability for large-scale flat areas is inadequate. This study proposes a depression watershed method coupled with the Preference Ranking Organization METHod for Enrichment Evaluations (PROMETHEEs) theory to determine the optimal outlet and calculate the flow direction in depressions. Three processing procedures are used to derive the depressionless flow direction: (1) calculating the incipient flow direction; (2) establishing the depression watershed by tracing the upstream drainage area and determining the depression outlet using PROMETHEE theory; (3) calculating the depressionless flow direction. The developed method was used to delineate the Shihmen Reservoir watershed located in Northern Taiwan. The results show that the depression watershed method can effectively solve the shortcomings such as depression outlet differentiating and looped flow direction between depressions. The suitability of the proposed approach was verified.

Hydrologic data and instrumentation, and methods of collecting the data to small watersheds in the coal-mining region of west-central Indiana, October 1980 to June 1983

USGS Publications Warehouse

Renn, D.E.; Duwelius, R.F.; Keeton, C.R.; Tyler, J.W.

1985-01-01

Methods and instrumentation used in collecting samples and measuring concentrations and properties of the following types of data are described in the text: streamflow in seven watersheds; ground-water levels in 46 wells in unconsolidated material and 12 wells in bedrock in or near the watersheds; precipitation in seven watersheds; solar radiation, relative humidity, wind speed, and temperature of air and soil at one location; and pH, specific conductance, temperature of water, and concentrations of selected chemical constituents and suspended sediment in two watersheds.

Land cover change assessment using object-oriented classification based on image segmentation in the Binah river watershed (Togo and Benin)

NASA Astrophysics Data System (ADS)

Badjana, M. H.; Helmschrot, J.; Wala, K.; Flugel, W. A.; Afouda, A.; Akpagana, K.

2014-12-01

Assessing and monitoring land cover changes over time, especially in Sub-Saharan Africa characterized by both a high population growth and the highest rate of land degradation in the world is of high relevance for sustainable land management, water security and food production. In this study, land cover changes between 1972 and 2013 were investigated in the Binah river watershed (North of Togo and Benin) using advanced remote sensing and GIS technologies to support sustainable land and water resources management efforts. To this end, multi-temporal satellite images - Landsat MSS (1972), TM (1987) and ETM+ (2013) were processed using object-oriented classification based on image segmentation and post-classification comparison methods. Five main land cover classes namely agricultural land, forest land, savannah, settlements and water bodies have been identified with overall accuracies of 75.11% (1972), 81.82% (1987), and 86.1% (2013) and respective Kappa statistics of 0.67, 0.76 and 0.83. These classification results helped to explicitly assess the spatio-temporal pattern of land cover within the basin. The results indicate that savannah as the main vegetation type in the basin has decreased from 63.3% of the basin area in 1972 to 60.4% in 1987 and 35.6% in 2013. Also the forest land which covered 20.7% in 1972 has decreased to 12.7% in 1987 and 11.7% in 2013. This severe decrease in vegetation mainly resulted from the extension of agricultural areas and settlements, which is, thus, considered as the main driving force. In fact, agricultural land increased of 61.4% from 1972 to 1987, 81.4% from 1987 to 2013 and almost twice from 1972 to 2013 while human settlements increased from 0.8% of the basin area in 1972 to 2.5% in 1987 and 7.7% in 2013. The transition maps illustrate the conversion of savannah to agricultural land at each time step relating to slash and burn agriculture, but also demonstrate the threat of environmental degradation of the savannah biome. However, at the same time, some proportions of agricultural land were converted to savannah relating to fallow agriculture. As a first assessment for the Binah river watershed, this study provides useful guidelines for vegetation restoration and conservation, efforts in managing land degradation and implementing integrated land and water resources management plans.

Effects of multi-scale environmental characteristics on agricultural stream biota in eastern Wisconsin

USGS Publications Warehouse

Fitzpatrick, F.A.; Scudder, B.C.; Lenz, B.N.; Sullivan, D.J.

2001-01-01

The U.S. Geological Survey examined 25 agricultural streams in eastern Wisconsin to determine relations between fish, invertebrate, and algal metrics and multiple spatial scales of land cover, geologic setting, hydrologic, aquatic habitat, and water chemistry data. Spearman correlation and redundancy analyses were used to examine relations among biotic metrics and environmental characteristics. Riparian vegetation, geologic, and hydrologic conditions affected the response of biotic metrics to watershed agricultural land cover but the relations were aquatic assemblage dependent. It was difficult to separate the interrelated effects of geologic setting, watershed and buffer land cover, and base flow. Watershed and buffer land cover, geologic setting, reach riparian vegetation width, and stream size affected the fish IBI, invertebrate diversity, diatom IBI, and number of algal taxa; however, the invertebrate FBI, percentage of EPT, and the diatom pollution index were more influenced by nutrient concentrations and flow variability. Fish IBI scores seemed most sensitive to land cover in the entire stream network buffer, more so than watershed-scale land cover and segment or reach riparian vegetation width. All but one stream with more than approximately 10 percent buffer agriculture had fish IBI scores of fair or poor. In general, the invertebrate and algal metrics used in this study were not as sensitive to land cover effects as fish metrics. Some of the reach-scale characteristics, such as width/depth ratios, velocity, and bank stability, could be related to watershed influences of both land cover and geologic setting. The Wisconsin habitat index was related to watershed geologic setting, watershed and buffer land cover, riparian vegetation width, and base flow, and appeared to be a good indicator of stream quality. Results from this study emphasize the value of using more than one or two biotic metrics to assess water quality and the importance of environmental characteristics at multiple scales.

Watershed reliability, resilience and vulnerability analysis under uncertainty using water quality data.

PubMed

Hoque, Yamen M; Tripathi, Shivam; Hantush, Mohamed M; Govindaraju, Rao S

2012-10-30

A method for assessment of watershed health is developed by employing measures of reliability, resilience and vulnerability (R-R-V) using stream water quality data. Observed water quality data are usually sparse, so that a water quality time-series is often reconstructed using surrogate variables (streamflow). A Bayesian algorithm based on relevance vector machine (RVM) was employed to quantify the error in the reconstructed series, and a probabilistic assessment of watershed status was conducted based on established thresholds for various constituents. As an application example, observed water quality data for several constituents at different monitoring points within the Cedar Creek watershed in north-east Indiana (USA) were utilized. Considering uncertainty in the data for the period 2002-2007, the R-R-V analysis revealed that the Cedar Creek watershed tends to be in compliance with respect to selected pesticides, ammonia and total phosphorus. However, the watershed was found to be prone to violations of sediment standards. Ignoring uncertainty in the water quality time-series led to misleading results especially in the case of sediments. Results indicate that the methods presented in this study may be used for assessing the effects of different stressors over a watershed. The method shows promise as a management tool for assessing watershed health. Copyright © 2012 Elsevier Ltd. All rights reserved.

Using CSLD Method to Calculate COD Pollution Load of Wei River Watershed above Huaxian Section, China

NASA Astrophysics Data System (ADS)

Zhu, Lei; Song, JinXi; Liu, WanQing

2017-12-01

Huaxian Section is the last hydrological and water quality monitoring section of Weihe River Watershed. Weihe River Watershed above Huaxian Section is taken as the research objective in this paper and COD is chosen as the water quality parameter. According to the discharge characteristics of point source pollutions and non-point source pollutions, a new method to estimate pollution loads—characteristic section load(CSLD) method is suggested and point source pollution and non-point source pollution loads of Weihe River Watershed above Huaxian Section are calculated in the rainy, normal and dry season in the year 2007. The results show that the monthly point source pollution loads of Weihe River Watershed above Huaxian Section discharge stably and the monthly non-point source pollution loads of Weihe River Watershed above Huaxian Section change greatly and the non-point source pollution load proportions of total pollution load of COD decrease in the normal, rainy and wet period in turn.

Comparison of estimated and observed stormwater runoff for fifteen watersheds in west-central Florida, using five common design techniques

USGS Publications Warehouse

Trommer, J.T.; Loper, J.E.; Hammett, K.M.; Bowman, Georgia

1996-01-01

Hydrologists use several traditional techniques for estimating peak discharges and runoff volumes from ungaged watersheds. However, applying these techniques to watersheds in west-central Florida requires that empirical relationships be extrapolated beyond tested ranges. As a result there is some uncertainty as to their accuracy. Sixty-six storms in 15 west-central Florida watersheds were modeled using (1) the rational method, (2) the U.S. Geological Survey regional regression equations, (3) the Natural Resources Conservation Service (formerly the Soil Conservation Service) TR-20 model, (4) the Army Corps of Engineers HEC-1 model, and (5) the Environmental Protection Agency SWMM model. The watersheds ranged between fully developed urban and undeveloped natural watersheds. Peak discharges and runoff volumes were estimated using standard or recommended methods for determining input parameters. All model runs were uncalibrated and the selection of input parameters was not influenced by observed data. The rational method, only used to calculate peak discharges, overestimated 45 storms, underestimated 20 storms and estimated the same discharge for 1 storm. The mean estimation error for all storms indicates the method overestimates the peak discharges. Estimation errors were generally smaller in the urban watersheds and larger in the natural watersheds. The U.S. Geological Survey regression equations provide peak discharges for storms of specific recurrence intervals. Therefore, direct comparison with observed data was limited to sixteen observed storms that had precipitation equivalent to specific recurrence intervals. The mean estimation error for all storms indicates the method overestimates both peak discharges and runoff volumes. Estimation errors were smallest for the larger natural watersheds in Sarasota County, and largest for the small watersheds located in the eastern part of the study area. The Natural Resources Conservation Service TR-20 model, overestimated peak discharges for 45 storms and underestimated 21 storms, and overestimated runoff volumes for 44 storms and underestimated 22 storms. The mean estimation error for all storms modeled indicates that the model overestimates peak discharges and runoff volumes. The smaller estimation errors in both peak discharges and runoff volumes were for storms occurring in the urban watersheds, and the larger errors were for storms occurring in the natural watersheds. The HEC-1 model overestimated peak discharge rates for 55 storms and underestimated 11 storms. Runoff volumes were overestimated for 44 storms and underestimated for 22 storms using the Army Corps of Engineers HEC-1 model. The mean estimation error for all the storms modeled indicates that the model overestimates peak discharge rates and runoff volumes. Generally, the smaller estimation errors in peak discharges were for storms occurring in the urban watersheds, and the larger errors were for storms occurring in the natural watersheds. Estimation errors in runoff volumes; however, were smallest for the 3 natural watersheds located in the southernmost part of Sarasota County. The Environmental Protection Agency Storm Water Management model produced similar peak discharges and runoff volumes when using both the Green-Ampt and Horton infiltration methods. Estimated peak discharge and runoff volume data calculated with the Horton method was only slightly higher than those calculated with the Green-Ampt method. The mean estimation error for all the storms modeled indicates the model using the Green-Ampt infiltration method overestimates peak discharges and slightly underestimates runoff volumes. Using the Horton infiltration method, the model overestimates both peak discharges and runoff volumes. The smaller estimation errors in both peak discharges and runoff volumes were for storms occurring in the five natural watersheds in Sarasota County with the least amount of impervious cover and the lowest slopes. The largest er

Using soil surveys to target riparian buffers in the Chesapeake Bay watershed

Treesearch

Michael G. Dosskey

2008-01-01

The efficacy of vegetative buffers for improving water quality could be enhanced by distinguishing differences in buffer capability across watersheds and accounting for them in buffer planning. A soil survey-based method was applied to riparian areas in the Chesapeake Bay watershed. The method is based on soil attributes that are important in determining buffer...

Mathematical modeling of synthetic unit hydrograph case study: Citarum watershed

NASA Astrophysics Data System (ADS)

Islahuddin, Muhammad; Sukrainingtyas, Adiska L. A.; Kusuma, M. Syahril B.; Soewono, Edy

2015-09-01

Deriving unit hydrograph is very important in analyzing watershed's hydrologic response of a rainfall event. In most cases, hourly measures of stream flow data needed in deriving unit hydrograph are not always available. Hence, one needs to develop methods for deriving unit hydrograph for ungagged watershed. Methods that have evolved are based on theoretical or empirical formulas relating hydrograph peak discharge and timing to watershed characteristics. These are usually referred to Synthetic Unit Hydrograph. In this paper, a gamma probability density function and its variant are used as mathematical approximations of a unit hydrograph for Citarum Watershed. The model is adjusted with real field condition by translation and scaling. Optimal parameters are determined by using Particle Swarm Optimization method with weighted objective function. With these models, a synthetic unit hydrograph can be developed and hydrologic parameters can be well predicted.

Assessing critical source areas in watersheds for conservation buffer planning and riparian restoration.

PubMed

Qiu, Zeyuan

2009-11-01

A science-based geographic information system (GIS) approach is presented to target critical source areas in watersheds for conservation buffer placement. Critical source areas are the intersection of hydrologically sensitive areas and pollutant source areas in watersheds. Hydrologically sensitive areas are areas that actively generate runoff in the watershed and are derived using a modified topographic index approach based on variable source area hydrology. Pollutant source areas are the areas in watersheds that are actively and intensively used for such activities as agricultural production. The method is applied to the Neshanic River watershed in Hunterdon County, New Jersey. The capacity of the topographic index in predicting the spatial pattern of runoff generation and the runoff contribution to stream flow in the watershed is evaluated. A simple cost-effectiveness assessment is conducted to compare the conservation buffer placement scenario based on this GIS method to conventional riparian buffer scenarios for placing conservation buffers in agricultural lands in the watershed. The results show that the topographic index reasonably predicts the runoff generation in the watershed. The GIS-based conservation buffer scenario appears to be more cost-effective than the conventional riparian buffer scenarios.

Determination of Water Quality Status at Sampean Watershed Bondowoso Residence Using Storet Method

NASA Astrophysics Data System (ADS)

Sugiyarto; Hariono, B.; Destarianto, P.; Nuruddin, M.

2018-01-01

Sampean watershed has an important social and economic function for the people surroundings. Sampean watershed wich cover Bondowoso and Situbondo residence is an urban watershed that has strategic value for national context needs special traetment. Construction activity at upper and lower course of Sampean watershed is highly intensive and growth of inhabitant also increase. The change of land utilization and increase of settlement area at upper, midlle, and lower course caused polutant infiltration to Sampean river watershed so it has impact on water quality. The source of pollution at Sampean river comes from domestic waste, industrial waste, agricultural waste and animal husbandry waste. The purpose of this research is to determine load of pollution and analize the pollution load carrying capacity at Sampean watershed. The data used in this research are rainfall, river flow rate and water quality at 6 certain points within 3 years during 2014 until 2016. The method to determine overall pollution rate is STORET (Storage and Retrieval of Water Quality Data System) method. The analysis results for the first, second, third and forth grade are -24 (moderate quality), -12 (moderate quality), -2 (good quality), and 0 (good quality) respectively.

An image processing pipeline to detect and segment nuclei in muscle fiber microscopic images.

PubMed

Guo, Yanen; Xu, Xiaoyin; Wang, Yuanyuan; Wang, Yaming; Xia, Shunren; Yang, Zhong

2014-08-01

Muscle fiber images play an important role in the medical diagnosis and treatment of many muscular diseases. The number of nuclei in skeletal muscle fiber images is a key bio-marker of the diagnosis of muscular dystrophy. In nuclei segmentation one primary challenge is to correctly separate the clustered nuclei. In this article, we developed an image processing pipeline to automatically detect, segment, and analyze nuclei in microscopic image of muscle fibers. The pipeline consists of image pre-processing, identification of isolated nuclei, identification and segmentation of clustered nuclei, and quantitative analysis. Nuclei are initially extracted from background by using local Otsu's threshold. Based on analysis of morphological features of the isolated nuclei, including their areas, compactness, and major axis lengths, a Bayesian network is trained and applied to identify isolated nuclei from clustered nuclei and artifacts in all the images. Then a two-step refined watershed algorithm is applied to segment clustered nuclei. After segmentation, the nuclei can be quantified for statistical analysis. Comparing the segmented results with those of manual analysis and an existing technique, we find that our proposed image processing pipeline achieves good performance with high accuracy and precision. The presented image processing pipeline can therefore help biologists increase their throughput and objectivity in analyzing large numbers of nuclei in muscle fiber images. © 2014 Wiley Periodicals, Inc.

Watershed analysis on federal lands of the Pacific northwest

Treesearch

Leslie M. Reid; Robert R. Ziemer; Michael J. Furniss

1994-01-01

Abstract - Watershed analysis-the evaluation of processes that affect ecosystems and resources in a watershed-is now being carried out by Federal land-management and regulatory agencies on Federal lands of the Pacific Northwest. Methods used differ from those of other implementations of watershed analysis because objectives and opportunities differ. In particular,...

Watershed councils: it takes a community to restore a watershed

Treesearch

Marie Oliver; Rebecca Flitcroft

2011-01-01

Regulation alone cannot solve complex ecological problems on private lands that are managed for diverse uses. Executing coordinated restoration projects at the watershed scale is only possible with the cooperation and commitment of all stakeholders. Locally organized, nonregulatory watershed councils have proven to be a powerful method of engaging citizens from all...

Linking Air Quality and Watershed Models for Environmental Assessments: Analysis of the Effects of Model-Specific Precipitation Estimates on Calculated Water Flux

EPA Science Inventory

Directly linking air quality and watershed models could provide an effective method for estimating spatially-explicit inputs of atmospheric contaminants to watershed biogeochemical models. However, to adequately link air and watershed models for wet deposition estimates, each mod...

DEM Based Modeling: Grid or TIN? The Answer Depends

NASA Astrophysics Data System (ADS)

Ogden, F. L.; Moreno, H. A.

2015-12-01

The availability of petascale supercomputing power has enabled process-based hydrological simulations on large watersheds and two-way coupling with mesoscale atmospheric models. Of course with increasing watershed scale come corresponding increases in watershed complexity, including wide ranging water management infrastructure and objectives, and ever increasing demands for forcing data. Simulations of large watersheds using grid-based models apply a fixed resolution over the entire watershed. In large watersheds, this means an enormous number of grids, or coarsening of the grid resolution to reduce memory requirements. One alternative to grid-based methods is the triangular irregular network (TIN) approach. TINs provide the flexibility of variable resolution, which allows optimization of computational resources by providing high resolution where necessary and low resolution elsewhere. TINs also increase required effort in model setup, parameter estimation, and coupling with forcing data which are often gridded. This presentation discusses the costs and benefits of the use of TINs compared to grid-based methods, in the context of large watershed simulations within the traditional gridded WRF-HYDRO framework and the new TIN-based ADHydro high performance computing watershed simulator.

Daily Streamflow Predictions in an Ungauged Watershed in Northern California Using the Precipitation-Runoff Modeling System (PRMS): Calibration Challenges when nearby Gauged Watersheds are Hydrologically Dissimilar

NASA Astrophysics Data System (ADS)

Dhakal, A. S.; Adera, S.

2017-12-01

Accurate daily streamflow prediction in ungauged watersheds with sparse information is challenging. The ability of a hydrologic model calibrated using nearby gauged watersheds to predict streamflow accurately depends on hydrologic similarities between the gauged and ungauged watersheds. This study examines daily streamflow predictions using the Precipitation-Runoff Modeling System (PRMS) for the largely ungauged San Antonio Creek watershed, a 96 km2 sub-watershed of the Alameda Creek watershed in Northern California. The process-based PRMS model is being used to improve the accuracy of recent San Antonio Creek streamflow predictions generated by two empirical methods. Although San Antonio Creek watershed is largely ungauged, daily streamflow data exists for hydrologic years (HY) 1913 - 1930. PRMS was calibrated for HY 1913 - 1930 using streamflow data, modern-day land use and PRISM precipitation distribution, and gauged precipitation and temperature data from a nearby watershed. The PRMS model was then used to generate daily streamflows for HY 1996-2013, during which the watershed was ungauged, and hydrologic responses were compared to two nearby gauged sub-watersheds of Alameda Creek. Finally, the PRMS-predicted daily flows between HY 1996-2013 were compared to the two empirically-predicted streamflow time series: (1) the reservoir mass balance method and (2) correlation of historical streamflows from 80 - 100 years ago between San Antonio Creek and a nearby sub-watershed located in Alameda Creek. While the mass balance approach using reservoir storage and transfers is helpful for estimating inflows to the reservoir, large discrepancies in daily streamflow estimation can arise. Similarly, correlation-based predicted daily flows which rely on a relationship from flows collected 80-100 years ago may not represent current watershed hydrologic conditions. This study aims to develop a method of streamflow prediction in the San Antonio Creek watershed by examining PRMS's model outputs as well as empirically generated flow data for their use in water resources management decisions. PRMS is also being used to better understand the streamflow patterns in the San Antonio Creek watershed for a variety of antecedent soil moisture conditions as the creek is generally dry between late Spring and early Fall.

Comparison of transect sampling and object-oriented image classification methods of urbanizing catchments

NASA Astrophysics Data System (ADS)

Yang, Y.; Tenenbaum, D. E.

2009-12-01

The process of urbanization has major effects on both human and natural systems. In order to monitor these changes and better understand how urban ecological systems work, urban spatial structure and the variation needs to be first quantified at a fine scale. Because the land-use and land-cover (LULC) in urbanizing areas is highly heterogeneous, the classification of urbanizing environments is the most challenging field in remote sensing. Although a pixel-based method is a common way to do classification, the results are not good enough for many research objectives which require more accurate classification data in fine scales. Transect sampling and object-oriented classification methods are more appropriate for urbanizing areas. Tenenbaum used a transect sampling method using a computer-based facility within a widely available commercial GIS in the Glyndon Catchment and the Upper Baismans Run Catchment, Baltimore, Maryland. It was a two-tiered classification system, including a primary level (which includes 7 classes) and a secondary level (which includes 37 categories). The statistical information of LULC was collected. W. Zhou applied an object-oriented method at the parcel level in Gwynn’s Falls Watershed which includes the two previously mentioned catchments and six classes were extracted. The two urbanizing catchments are located in greater Baltimore, Maryland and drain into Chesapeake Bay. In this research, the two different methods are compared for 6 classes (woody, herbaceous, water, ground, pavement and structure). The comparison method uses the segments in the transect method to extract LULC information from the results of the object-oriented method. Classification results were compared in order to evaluate the difference between the two methods. The overall proportions of LULC classes from the two studies show that there is overestimation of structures in the object-oriented method. For the other five classes, the results from the two methods are similar, except for a difference in the proportions of the woody class. The segment to segment comparison shows that the resolution of the light detection and ranging (LIDAR) data used in the object-oriented method does affect the accuracy of the classification. Shadows of trees and structures are still a big problem in the object-oriented method. For classes that make up a small proportion of the catchments, such as water, neither method was capable of detecting them.

GIS-based spatial regression and prediction of water quality in river networks: A case study in Iowa

USGS Publications Warehouse

Yang, X.; Jin, W.

2010-01-01

Nonpoint source pollution is the leading cause of the U.S.'s water quality problems. One important component of nonpoint source pollution control is an understanding of what and how watershed-scale conditions influence ambient water quality. This paper investigated the use of spatial regression to evaluate the impacts of watershed characteristics on stream NO3NO2-N concentration in the Cedar River Watershed, Iowa. An Arc Hydro geodatabase was constructed to organize various datasets on the watershed. Spatial regression models were developed to evaluate the impacts of watershed characteristics on stream NO3NO2-N concentration and predict NO3NO2-N concentration at unmonitored locations. Unlike the traditional ordinary least square (OLS) method, the spatial regression method incorporates the potential spatial correlation among the observations in its coefficient estimation. Study results show that NO3NO2-N observations in the Cedar River Watershed are spatially correlated, and by ignoring the spatial correlation, the OLS method tends to over-estimate the impacts of watershed characteristics on stream NO3NO2-N concentration. In conjunction with kriging, the spatial regression method not only makes better stream NO3NO2-N concentration predictions than the OLS method, but also gives estimates of the uncertainty of the predictions, which provides useful information for optimizing the design of stream monitoring network. It is a promising tool for better managing and controlling nonpoint source pollution. ?? 2010 Elsevier Ltd.

Bioaccumulation of selenium by the Bryophyte Hygrohypnum ochraceum in the Fountain Creek Watershed, Colorado.

PubMed

Herrmann, S J; Turner, J A; Carsella, J S; Lehmpuhl, D W; Nimmo, D R

2012-12-01

Aquatic bryophytes, Hygrohypnum ochraceum, were deployed "in situ" at 14 sites in the Fountain Creek Watershed, spring and fall, 2007 to study selenium (Se) accumulation. Dissolved, total, and pore (sediment derived) water samples were collected and water quality parameters determined while plants were exposed to the water for 10 days. There was a trend showing plant tissue-Se uptake with distance downstream and we found a strong correlation between Se in the water with total hardness in both seasons. There was a modest association between Se-uptake in plants with hardness in the spring of 2007 but not the fall. Plants bioconcentrated Se from the water by a factor of 5.8 × 10(3) at Green Mountain Falls and 1.5 × 10(4) at Manitou Springs in the fall of 2007. Both are examples of the bioconcentration abilities of the plants, primarily in the upper reaches of the watershed where bioconcentration factors were highest. However, the mean minima and maxima of Se in the plants in each of the three watershed segments appeared similar during both seasons. We found direct relationships between the pore and dissolved Se in water in the spring (R (2) = 0.84) and fall (R (2) = 0.95) and dissolved Se and total hardness in the spring and fall (R (2) = 0.92). The data indicate that H. ochraceum was a suitable indicator of Se bioavailability and Se uptake in other trophic levels in the Fountain Creek Watershed based on a subsequent study of Se accumulation in fish tissues at all 14 sites.

Contaminant Concentrations in Storm Water Entering the Sinclair/Dyes Inlet Subasin of the Puget Sound, USA, During Storm Event and Baseflow Conditions

DOE Office of Scientific and Technical Information (OSTI.GOV)

Brandenberger, Jill M.; May, Christopher W.; Cullinan, Valerie I.

2007-03-29

The Sinclair and Dyes Inlet watershed is located on the west side of Puget Sound in Kitsap County, Washington, U.S.A. (Figure 1). Puget Sound Naval Shipyard (PSNS), U.S Environmental Protection Agency (USEPA), the Washington State Department of Ecology (WA-DOE), Kitsap County, City of Bremerton, City of Bainbridge Island, City of Port Orchard, and the Suquamish Tribe have joined in a cooperative effort to evaluate water-quality conditions the Sinclair-Dyes Inlet watershed and correct identified problems. A major focus of this project, known as Project ENVVEST, is to develop Water Clean-up (TMDL) Plans for constituents listed on the 303(d) list within themore » Sinclair and Dyes Inlet watershed. Segments within the Sinclair and Dyes Inlet watershed were listed on the State of Washington’s 1998 303(d) due to fecal coliform contamination in marine water, metals in sediment and fish tissue, and organics in sediment and fish tissue (WA-DOE 2003). Stormwater loading was identified by ENVVEST as one potential source of sediment contamination, which lacked sufficient data for the contaminant mass balance calculations conducted for the watershed. This paper summarizes the contaminant concentrations in representative streams and outfalls discharging into Sinclair and Dyes Inlets during 18 storm events and wet/dry season baseflow conditions between November 2002 and May 2005. This paper serves as a portion of the report titled, “Surface and Stormwater Quality Assessment for Sinclair and Dyes Inlet, Washington” (Brandenberger et al. 2007).« less

Prioritizing conservation activities using reserve site selection methods and population viability analysis.

PubMed

Newbold, Stephen C; Siikamäki, Juha

2009-10-01

In recent years a large literature on reserve site selection (RSS) has developed at the interface between ecology, operations research, and environmental economics. Reserve site selection models use numerical optimization techniques to select sites for a network of nature reserves for protecting biodiversity. In this paper, we develop a population viability analysis (PVA) model for salmon and incorporate it into an RSS framework for prioritizing conservation activities in upstream watersheds. We use spawner return data for three closely related salmon stocks in the upper Columbia River basin and estimates of the economic costs of watershed protection from NOAA to illustrate the framework. We compare the relative cost-effectiveness of five alternative watershed prioritization methods, based on various combinations of biological and economic information. Prioritization based on biological benefit-economic cost comparisons and accounting for spatial interdependencies among watersheds substantially outperforms other more heuristic methods. When using this best-performing prioritization method, spending 10% of the cost of protecting all upstream watersheds yields 79% of the biological benefits (increase in stock persistence) from protecting all watersheds, compared to between 20% and 64% for the alternative methods. We also find that prioritization based on either costs or benefits alone can lead to severe reductions in cost-effectiveness.

Curve numbers for nine mountainous eastern United States watersheds: seasonal variation and forest cutting

Treesearch

Negussie H. Tedela; Steven C. McCutcheon; John L. Campbell; Wayne T. Swank; Mary Beth Adams; Todd C. Rasmussen

2012-01-01

Many engineers and hydrologists use the curve number method to estimate runoff from ungaged watersheds; however, the method does not explicitly account for the influence of season or forest cutting on runoff. This study of observed rainfall and runoff for small, forested watersheds that span the Appalachian Mountains of the eastern United States showed that curve...

Runoff curve numbers for 10 small forested watersheds in the mountains of the eastern United States

Treesearch

Negussie H. Tedela; Steven C. McCutcheon; Todd C. Rasmussen; Richard H. Hawkins; Wayne T. Swank; John L. Campbell; Mary Beth Adams; C. Rhett Jackson; Ernest W. Tollner

2012-01-01

Engineers and hydrologists use the curve number method to estimate runoff from rainfall for different land use and soil conditions; however, large uncertainties occur for estimates from forested watersheds. This investigation evaluates the accuracy and consistency of the method using rainfall-runoff series from 10 small forested-mountainous watersheds in the eastern...

Creation of an ensemble of simulated cardiac cases and a human observer study: tools for the development of numerical observers for SPECT myocardial perfusion imaging

NASA Astrophysics Data System (ADS)

O'Connor, J. Michael; Pretorius, P. Hendrik; Gifford, Howard C.; Licho, Robert; Joffe, Samuel; McGuiness, Matthew; Mehurg, Shannon; Zacharias, Michael; Brankov, Jovan G.

2012-02-01

Our previous Single Photon Emission Computed Tomography (SPECT) myocardial perfusion imaging (MPI) research explored the utility of numerical observers. We recently created two hundred and eighty simulated SPECT cardiac cases using Dynamic MCAT (DMCAT) and SIMIND Monte Carlo tools. All simulated cases were then processed with two reconstruction methods: iterative ordered subset expectation maximization (OSEM) and filtered back-projection (FBP). Observer study sets were assembled for both OSEM and FBP methods. Five physicians performed an observer study on one hundred and seventy-nine images from the simulated cases. The observer task was to indicate detection of any myocardial perfusion defect using the American Society of Nuclear Cardiology (ASNC) 17-segment cardiac model and the ASNC five-scale rating guidelines. Human observer Receiver Operating Characteristic (ROC) studies established the guidelines for the subsequent evaluation of numerical model observer (NO) performance. Several NOs were formulated and their performance was compared with the human observer performance. One type of NO was based on evaluation of a cardiac polar map that had been pre-processed using a gradient-magnitude watershed segmentation algorithm. The second type of NO was also based on analysis of a cardiac polar map but with use of a priori calculated average image derived from an ensemble of normal cases.

A novel transferable individual tree crown delineation model based on Fishing Net Dragging and boundary classification

NASA Astrophysics Data System (ADS)

Liu, Tao; Im, Jungho; Quackenbush, Lindi J.

2015-12-01

This study provides a novel approach to individual tree crown delineation (ITCD) using airborne Light Detection and Ranging (LiDAR) data in dense natural forests using two main steps: crown boundary refinement based on a proposed Fishing Net Dragging (FiND) method, and segment merging based on boundary classification. FiND starts with approximate tree crown boundaries derived using a traditional watershed method with Gaussian filtering and refines these boundaries using an algorithm that mimics how a fisherman drags a fishing net. Random forest machine learning is then used to classify boundary segments into two classes: boundaries between trees and boundaries between branches that belong to a single tree. Three groups of LiDAR-derived features-two from the pseudo waveform generated along with crown boundaries and one from a canopy height model (CHM)-were used in the classification. The proposed ITCD approach was tested using LiDAR data collected over a mountainous region in the Adirondack Park, NY, USA. Overall accuracy of boundary classification was 82.4%. Features derived from the CHM were generally more important in the classification than the features extracted from the pseudo waveform. A comprehensive accuracy assessment scheme for ITCD was also introduced by considering both area of crown overlap and crown centroids. Accuracy assessment using this new scheme shows the proposed ITCD achieved 74% and 78% as overall accuracy, respectively, for deciduous and mixed forest.

Large-Scale Mixed Temperate Forest Mapping at the Single Tree Level using Airborne Laser Scanning

NASA Astrophysics Data System (ADS)

Scholl, V.; Morsdorf, F.; Ginzler, C.; Schaepman, M. E.

2017-12-01

Monitoring vegetation on a single tree level is critical to understand and model a variety of processes, functions, and changes in forest systems. Remote sensing technologies are increasingly utilized to complement and upscale the field-based measurements of forest inventories. Airborne laser scanning (ALS) systems provide valuable information in the vertical dimension for effective vegetation structure mapping. Although many algorithms exist to extract single tree segments from forest scans, they are often tuned to perform well in homogeneous coniferous or deciduous areas and are not successful in mixed forests. Other methods are too computationally expensive to apply operationally. The aim of this study was to develop a single tree detection workflow using leaf-off ALS data for the canton of Aargau in Switzerland. Aargau covers an area of over 1,400km2 and features mixed forests with various development stages and topography. Forest type was classified using random forests to guide local parameter selection. Canopy height model-based treetop maxima were detected and maintained based on the relationship between tree height and window size, used as a proxy to crown diameter. Watershed segmentation was used to generate crown polygons surrounding each maximum. The location, height, and crown dimensions of single trees were derived from the ALS returns within each polygon. Validation was performed through comparison with field measurements and extrapolated estimates from long-term monitoring plots of the Swiss National Forest Inventory within the framework of the Swiss Federal Institute for Forest, Snow, and Landscape Research. This method shows promise for robust, large-scale single tree detection in mixed forests. The single tree data will aid ecological studies as well as forest management practices. Figure description: Height-normalized ALS point cloud data (top) and resulting single tree segments (bottom) on the Laegeren mountain in Switzerland.

Watershed challenges for the 21st Century: A global perspective for mountainous terrain

Treesearch

Roy C. Sidle

2000-01-01

Three global challenges for watershed researchers in the 21st century are examined in this paper. These challenges are obtaining better assessments of terrain stability; understanding hydrologic responses at different watershed scales; and developing better methods for analyzing and assessing cumulative watershed effects. These topics are only a subset of the pressing...

Establish Effective Lower Bounds of Watershed Slope for Traditional Hydrologic Methods

DOT National Transportation Integrated Search

2012-06-01

Equations to estimate timing parameters for a watershed contain watershed slope as a principal parameter and : estimates are usually inversely proportional to topographic slope. Hence as slope vanishes, the estimates approach : infinity. The research...

Merging Surface Reconstructions of Terrestrial and Airborne LIDAR Range Data

DTIC Science & Technology

2009-05-19

Mangan and R. Whitaker. Partitioning 3D surface meshes using watershed segmentation . IEEE Trans. on Visualization and Computer Graphics, 5(4), pp...Jain, and A. Zakhor. Data Processing Algorithms for Generating Textured 3D Building Facade Meshes from Laser Scans and Camera Images. International...acquired set of overlapping range images into a single mesh [2,9,10]. However, due to the volume of data involved in large scale urban modeling, data

Segmentation and tracking of anticyclonic eddies during a submarine volcanic eruption using ocean colour imagery.

PubMed

Marcello, Javier; Eugenio, Francisco; Estrada-Allis, Sheila; Sangrà, Pablo

2015-04-14

The eruptive phase of a submarine volcano located 2 km away from the southern coast of El Hierro Island started on October 2011. This extraordinary event provoked a dramatic perturbation of the water column. In order to understand and quantify the environmental impacts caused, a regular multidisciplinary monitoring was carried out using remote sensing sensors. In this context, we performed the systematic processing of every MODIS and MERIS and selected high resolution Worldview-2 imagery to provide information on the concentration of a number of biological, physical and chemical parameters. On the other hand, the eruption provided an exceptional source of tracer that allowed the study a variety of oceanographic structures. Specifically, the Canary Islands belong to a very active zone of long-lived eddies. Such structures are usually monitored using sea level anomaly fields. However these products have coarse spatial resolution and they are not suitable to perform submesoscale studies. Thanks to the volcanic tracer, detailed studies were undertaken with ocean colour imagery allowing, using the diffuse attenuation coefficient, to monitor the process of filamentation and axisymmetrization predicted by theoretical studies and numerical modelling. In our work, a novel 2-step segmentation methodology has been developed. The approach incorporates different segmentation algorithms and region growing techniques. In particular, the first step obtains an initial eddy segmentation using thresholding or clustering methods and, next, the fine detail is achieved by the iterative identification of the points to grow and the subsequent application of watershed or thresholding strategies. The methodology has demonstrated an excellent performance and robustness and it has proven to properly capture the eddy and its filaments.

Rapid Assessment of Logging-Associated Sediment-Delivery Pathways in an Intensively-Managed Forested Watershed in the Southern Cascades, Northern California

NASA Astrophysics Data System (ADS)

Coe, D. B.; Wopat, M. A.; Lindsay, D.; Stanish, S.; Boone, M.; Beck, B.; Wyman, A.; Bull, J.

2012-12-01

The potential for water-quality impacts in intensively-managed forested watersheds depends partly upon the frequency of overland flow paths linking logging-related hillslope sediment sources to the channel network, as well as the volume of sediment delivered along these flow paths. In response to public concerns over perceived water-quality impacts from clearcut timber harvesting, the Battle Creek Task Force, composed of subject-matter experts from 4 different state agencies, performed a rapid assessment for visible evidence of sediment delivery pathways from multiple logging-associated features in the upper Battle Creek watershed - an area underlain predominantly by Holocene- and Late Pleistocene-aged volcanic rock types, with highly permeable soils, and relatively few streams. Logging-associated features were selected for assessment based on erosion potential and proximity to stream channels. Identified sediment-delivery pathways were then characterized by dominant erosion process and the relative magnitude of sediment delivery (i.e., low, moderate, and high) was estimated. Approximately 26 km of stream buffers adjacent to 55 clearcut harvest units were assessed, and the single detected instance of sediment delivery was found to be of low magnitude and the result of illegal encroachment by logging equipment into a 5-m wide stream-adjacent equipment-limitation zone. The proportion of sampled sites delivering sediment was found to be highest for tractor-stream crossings, followed by road-stream crossings, stream-adjacent road segments, stream-adjacent landings, and clearcut harvest units, respectively. All 5 tractor-stream crossings delivered sediment, but were generally delivering a low magnitude of sediment derived from sheetwash and rilling. Road-stream crossings (n=39) and stream-adjacent road segments (n=24) delivered observable sediment 69 and 67 percent of the time, respectively. The highest magnitudes of sediment delivery from roads were associated with substandard design or maintenance practices (e.g., poor road drainage) and/or poor location (e.g., roads less than 15 m from a stream), but the magnitude of sediment delivery was generally low or unobservable where Best Management Practices (BMPs) had been implemented. Conceptually, water-quality impacts are limited by the low density of streams in the watershed, relatively low hillslope gradients, relatively high permeability of the soils, and the implementation of BMPs. Assessment results suggest that direct water-quality impacts from overland flow paths in these types of watersheds are best minimized by disconnecting flow paths linking roads to streams, and by implementing BMPs.

A method for estimating peak and time of peak streamflow from excess rainfall for 10- to 640-acre watersheds in the Houston, Texas, metropolitan area

USGS Publications Warehouse

Asquith, William H.; Cleveland, Theodore G.; Roussel, Meghan C.

2011-01-01

Estimates of peak and time of peak streamflow for small watersheds (less than about 640 acres) in a suburban to urban, low-slope setting are needed for drainage design that is cost-effective and risk-mitigated. During 2007-10, the U.S. Geological Survey (USGS), in cooperation with the Harris County Flood Control District and the Texas Department of Transportation, developed a method to estimate peak and time of peak streamflow from excess rainfall for 10- to 640-acre watersheds in the Houston, Texas, metropolitan area. To develop the method, 24 watersheds in the study area with drainage areas less than about 3.5 square miles (2,240 acres) and with concomitant rainfall and runoff data were selected. The method is based on conjunctive analysis of rainfall and runoff data in the context of the unit hydrograph method and the rational method. For the unit hydrograph analysis, a gamma distribution model of unit hydrograph shape (a gamma unit hydrograph) was chosen and parameters estimated through matching of modeled peak and time of peak streamflow to observed values on a storm-by-storm basis. Watershed mean or watershed-specific values of peak and time to peak ("time to peak" is a parameter of the gamma unit hydrograph and is distinct from "time of peak") of the gamma unit hydrograph were computed. Two regression equations to estimate peak and time to peak of the gamma unit hydrograph that are based on watershed characteristics of drainage area and basin-development factor (BDF) were developed. For the rational method analysis, a lag time (time-R), volumetric runoff coefficient, and runoff coefficient were computed on a storm-by-storm basis. Watershed-specific values of these three metrics were computed. A regression equation to estimate time-R based on drainage area and BDF was developed. Overall arithmetic means of volumetric runoff coefficient (0.41 dimensionless) and runoff coefficient (0.25 dimensionless) for the 24 watersheds were used to express the rational method in terms of excess rainfall (the excess rational method). Both the unit hydrograph method and excess rational method are shown to provide similar estimates of peak and time of peak streamflow. The results from the two methods can be combined by using arithmetic means. A nomograph is provided that shows the respective relations between the arithmetic-mean peak and time of peak streamflow to drainage areas ranging from 10 to 640 acres. The nomograph also shows the respective relations for selected BDF ranging from undeveloped to fully developed conditions. The nomograph represents the peak streamflow for 1 inch of excess rainfall based on drainage area and BDF; the peak streamflow for design storms from the nomograph can be multiplied by the excess rainfall to estimate peak streamflow. Time of peak streamflow is readily obtained from the nomograph. Therefore, given excess rainfall values derived from watershed-loss models, which are beyond the scope of this report, the nomograph represents a method for estimating peak and time of peak streamflow for applicable watersheds in the Houston metropolitan area. Lastly, analysis of the relative influence of BDF on peak streamflow is provided, and the results indicate a 0:04log10 cubic feet per second change of peak streamflow per positive unit of change in BDF. This relative change can be used to adjust peak streamflow from the method or other hydrologic methods for a given BDF to other BDF values; example computations are provided.

Image segmentation for uranium isotopic analysis by SIMS: Combined adaptive thresholding and marker controlled watershed approach

DOE Office of Scientific and Technical Information (OSTI.GOV)

Willingham, David G.; Naes, Benjamin E.; Heasler, Patrick G.

A novel approach to particle identification and particle isotope ratio determination has been developed for nuclear safeguard applications. This particle search approach combines an adaptive thresholding algorithm and marker-controlled watershed segmentation (MCWS) transform, which improves the secondary ion mass spectrometry (SIMS) isotopic analysis of uranium containing particle populations for nuclear safeguards applications. The Niblack assisted MCWS approach (a.k.a. SEEKER) developed for this work has improved the identification of isotopically unique uranium particles under conditions that have historically presented significant challenges for SIMS image data processing techniques. Particles obtained from five NIST uranium certified reference materials (CRM U129A, U015, U150, U500more » and U850) were successfully identified in regions of SIMS image data 1) where a high variability in image intensity existed, 2) where particles were touching or were in close proximity to one another and/or 3) where the magnitude of ion signal for a given region was count limited. Analysis of the isotopic distributions of uranium containing particles identified by SEEKER showed four distinct, accurately identified 235U enrichment distributions, corresponding to the NIST certified 235U/238U isotope ratios for CRM U129A/U015 (not statistically differentiated), U150, U500 and U850. Additionally, comparison of the minor uranium isotope (234U, 235U and 236U) atom percent values verified that, even in the absence of high precision isotope ratio measurements, SEEKER could be used to segment isotopically unique uranium particles from SIMS image data. Although demonstrated specifically for SIMS analysis of uranium containing particles for nuclear safeguards, SEEKER has application in addressing a broad set of image processing challenges.« less

A new precipitation-based method of baseflow separation and event identification for small watersheds (<50 km2)

NASA Astrophysics Data System (ADS)

Koskelo, Antti I.; Fisher, Thomas R.; Utz, Ryan M.; Jordan, Thomas E.

2012-07-01

SummaryBaseflow separation methods are often impractical, require expensive materials and time-consuming methods, and/or are not designed for individual events in small watersheds. To provide a simple baseflow separation method for small watersheds, we describe a new precipitation-based technique known as the Sliding Average with Rain Record (SARR). The SARR uses rainfall data to justify each separation of the hydrograph. SARR has several advantages such as: it shows better consistency with the precipitation and discharge records, it is easier and more practical to implement, and it includes a method of event identification based on precipitation and quickflow response. SARR was derived from the United Kingdom Institute of Hydrology (UKIH) method with several key modifications to adapt it for small watersheds (<50 km2). We tested SARR on watersheds in the Choptank Basin on the Delmarva Peninsula (US Mid-Atlantic region) and compared the results with the UKIH method at the annual scale and the hydrochemical method at the individual event scale. Annually, SARR calculated a baseflow index that was ˜10% higher than the UKIH method due to the finer time step of SARR (1 d) compared to UKIH (5 d). At the watershed scale, hydric soils were an important driver of the annual baseflow index likely due to increased groundwater retention in hydric areas. At the event scale, SARR calculated less baseflow than the hydrochemical method, again because of the differences in time step (hourly for hydrochemical) and different definitions of baseflow. Both SARR and hydrochemical baseflow increased with event size, suggesting that baseflow contributions are more important during larger storms. To make SARR easy to implement, we have written a MatLab program to automate the calculations which requires only daily rainfall and daily flow data as inputs.

An Extended Spectral-Spatial Classification Approach for Hyperspectral Data

NASA Astrophysics Data System (ADS)

Akbari, D.

2017-11-01

In this paper an extended classification approach for hyperspectral imagery based on both spectral and spatial information is proposed. The spatial information is obtained by an enhanced marker-based minimum spanning forest (MSF) algorithm. Three different methods of dimension reduction are first used to obtain the subspace of hyperspectral data: (1) unsupervised feature extraction methods including principal component analysis (PCA), independent component analysis (ICA), and minimum noise fraction (MNF); (2) supervised feature extraction including decision boundary feature extraction (DBFE), discriminate analysis feature extraction (DAFE), and nonparametric weighted feature extraction (NWFE); (3) genetic algorithm (GA). The spectral features obtained are then fed into the enhanced marker-based MSF classification algorithm. In the enhanced MSF algorithm, the markers are extracted from the classification maps obtained by both SVM and watershed segmentation algorithm. To evaluate the proposed approach, the Pavia University hyperspectral data is tested. Experimental results show that the proposed approach using GA achieves an approximately 8 % overall accuracy higher than the original MSF-based algorithm.

A New Cluster Analysis-Marker-Controlled Watershed Method for Separating Particles of Granular Soils.

PubMed

Alam, Md Ferdous; Haque, Asadul

2017-10-18

An accurate determination of particle-level fabric of granular soils from tomography data requires a maximum correct separation of particles. The popular marker-controlled watershed separation method is widely used to separate particles. However, the watershed method alone is not capable of producing the maximum separation of particles when subjected to boundary stresses leading to crushing of particles. In this paper, a new separation method, named as Monash Particle Separation Method (MPSM), has been introduced. The new method automatically determines the optimal contrast coefficient based on cluster evaluation framework to produce the maximum accurate separation outcomes. Finally, the particles which could not be separated by the optimal contrast coefficient were separated by integrating cuboid markers generated from the clustering by Gaussian mixture models into the routine watershed method. The MPSM was validated on a uniformly graded sand volume subjected to one-dimensional compression loading up to 32 MPa. It was demonstrated that the MPSM is capable of producing the best possible separation of particles required for the fabric analysis.

US EPA’s Watershed Management Research Activities

EPA Science Inventory

The U.S. Environmental Protection Agency’s Urban Watershed Management Branch (UWMB) is responsible for developing and demonstrating methods to manage the risk to public health, property and the environment from wet-weather flows (WWF) in urban watersheds. The activities are prim...

SCS-CN parameter determination using rainfall-runoff data in heterogeneous watersheds. The two-CN system approach

NASA Astrophysics Data System (ADS)

Soulis, K. X.; Valiantzas, J. D.

2011-10-01

The Soil Conservation Service Curve Number (SCS-CN) approach is widely used as a simple method for predicting direct runoff volume for a given rainfall event. The CN values can be estimated by being selected from tables. However, it is more accurate to estimate the CN value from measured rainfall-runoff data (assumed available) in a watershed. Previous researchers indicated that the CN values calculated from measured rainfall-runoff data vary systematically with the rainfall depth. They suggested the determination of a single asymptotic CN value observed for very high rainfall depths to characterize the watersheds' runoff response. In this paper, the novel hypothesis that the observed correlation between the calculated CN value and the rainfall depth in a watershed reflects the effect of the inevitable presence of soil-cover complex spatial variability along watersheds is being tested. Based on this hypothesis, the simplified concept of a two-CN heterogeneous system is introduced to model the observed CN-rainfall variation by reducing the CN spatial variability into two classes. The behavior of the CN-rainfall function produced by the proposed two-CN system concept is approached theoretically, it is analyzed systematically, and it is found to be similar to the variation observed in natural watersheds. Synthetic data tests, natural watersheds examples, and detailed study of two natural experimental watersheds with known spatial heterogeneity characteristics were used to evaluate the method. The results indicate that the determination of CN values from rainfall runoff data using the proposed two-CN system approach provides reasonable accuracy and it over performs the previous original method based on the determination of a single asymptotic CN value. Although the suggested method increases the number of unknown parameters to three (instead of one), a clear physical reasoning for them is presented.

Gender sensitive education in watershed management to support environmental friendly city

NASA Astrophysics Data System (ADS)

Asteria, D.; Budidarmono; Herdiansyah, H.; Ni’mah, N. L.

2018-03-01

This study is about gender-sensitive perspective in watershed management education program as one of capacity building for citizens in watershed management with community-based strategy to support environmental friendly cities and security for women from flood disasters. Involving women and increasing women’s active participation in sustainable watershed management is essential in urban area. In global warming and climate change situations, city management should be integrated between social aspect and environmental planning. This study used mix method (concurrent embedded type, with quantitative as primary method) with research type is descriptive-explanatory. The result of this study is education strategies with gender approaches and affirmative action through emancipation approach and local knowledge from women’s experiences can increase women’s participation. Women’s empowerment efforts need integrated intervention and collaboration from government, NGO, and other stakeholders to optimize women’s role in watershed management for support environmental friendly city. The implication of this study is an educational strategy on watershed conservation with gender perspective to offer social engineering alternatives for decision makers to policy of sustainable watershed management in urban area related to flood mitigation efforts.

Use of continuous and grab sample data for calculating total maximum daily load (TMDL) in agricultural watersheds.

PubMed

Gulati, Shelly; Stubblefield, Ashley A; Hanlon, Jeremy S; Spier, Chelsea L; Stringfellow, William T

2014-03-01

Measuring the discharge of diffuse pollution from agricultural watersheds presents unique challenges. Flows in agricultural watersheds, particularly in Mediterranean climates, can be predominately irrigation runoff and exhibit large diurnal fluctuation in both volume and concentration. Flow and pollutant concentrations in these smaller watersheds dominated by human activity do not conform to a normal distribution and it is not clear if parametric methods are appropriate or accurate for load calculations. The objective of this study was to compare the accuracy of five load estimation methods to calculate pollutant loads from agricultural watersheds. Calculation of loads using results from discrete (grab) samples was compared with the true-load computed using in situ continuous monitoring measurements. A new method is introduced that uses a non-parametric measure of central tendency (the median) to calculate loads (median-load). The median-load method was compared to more commonly used parametric estimation methods which rely on using the mean as a measure of central tendency (mean-load and daily-load), a method that utilizes the total flow volume (volume-load), and a method that uses measure of flow at the time of sampling (instantaneous-load). Using measurements from ten watersheds in the San Joaquin Valley of California, the average percent error compared to the true-load for total dissolved solids (TDS) was 7.3% for the median-load, 6.9% for the mean-load, 6.9% for the volume-load, 16.9% for the instantaneous-load, and 18.7% for the daily-load methods of calculation. The results of this study show that parametric methods are surprisingly accurate, even for data that have starkly non-normal distributions and are highly skewed. Copyright © 2013 Elsevier Ltd. All rights reserved.

Framework for Placement of BMPs in Urban Watersheds (2008)

EPA Science Inventory

The U.S. Environmental Protection Agency’s Urban Watershed Management Branch is responsible for developing and demonstrating methods to manage the risk to public health, property and the environment from wet-weather flows (WWF) in urban watersheds. The activities are primarily a...

Long-term impacts of land cover changes on stream channel loss.

PubMed

Julian, Jason P; Wilgruber, Nicholas A; de Beurs, Kirsten M; Mayer, Paul M; Jawarneh, Rana N

2015-12-15

Land cover change and stream channel loss are two related global environmental changes that are expanding and intensifying. Here, we examine how different types and transitions of land cover change impact stream channel loss across a large urbanizing watershed. We present historical land cover in the 666-km(2) Lake Thunderbird watershed in central Oklahoma (USA) over a 137 year period and coinciding stream channel length changes for the most recent 70 years of this period. Combining these two datasets allowed us to assess the interaction of land cover changes with stream channel loss. Over this period, the upper third of the watershed shifted from predominantly native grassland to an agricultural landscape, followed by widespread urbanization. The lower two-thirds of the watershed changed from a forested landscape to a mosaic of agriculture, urban, forest, and open water. Most channel length lost in the watershed over time was replaced by agriculture. Urban development gradually increased channel loss and disconnection from 1942 to 2011, particularly in the headwaters. Intensities of channel loss for both agriculture and urban increased over time. The two longest connected segments of channel loss came from the creation of two large impoundments, resulting in 46 km and 25 km of lost stream channel, respectively. Overall, the results from this study demonstrate that multiple and various land-use changes over long time periods can lead to rapid losses of large channel lengths as well as gradual (but increasing) losses of small channel lengths across all stream sizes. When these stream channel losses are taken into account, the environmental impacts of anthropogenic land-use change are compounded. Copyright © 2015 Elsevier B.V. All rights reserved.

Evaluation of land use and water quality in an agricultural watershed in the USA indicates multiple sources of bacterial impairment.

PubMed

Wittman, Jacob; Weckwerth, Andrew; Weiss, Chelsea; Heyer, Sharon; Seibert, Jacob; Kuennen, Ben; Ingels, Chad; Seigley, Lynette; Larsen, Kirk; Enos-Berlage, Jodi

2013-12-01

Pathogens are the number one cause of impairments of assessed rivers and streams in the USA and pose a significant human health hazard. The Dry Run Creek Watershed in Northeast Iowa has been designated as impaired by the State of Iowa because of high levels of Escherichia coli bacteria. To investigate the nature of this impairment, land use and stream bank assessments were coupled with comprehensive water quality monitoring. Physical, chemical, and biological parameters were measured at 13 different sites in the watershed, including pH, temperature, conductivity, dissolved oxygen, turbidity, total Kjeldahl nitrogen, ammonia-N, nitrate + nitrite-N, total phosphorus, and E. coli. In addition, benthic macroinvertebrate communities were analyzed at seven sites, and optical brightener tests were performed late in the season. Results identified segments of the watershed that were more prominent contributors of E. coli, and correlations were observed between levels of E. coli and several chemical parameters, including ammonia-N, total Kjeldahl nitrogen, and total phosphorus. Interestingly, distinct sites emerged as more prominent contributors of these elements during rain vs. non-rain events, suggesting different types of sources. Both the amount of rainfall and the time elapsed between the rain event and the sampling influenced E. coli levels during wet weather conditions. Nitrate + nitrite-N displayed a unique response to rain events compared with the other parameters, suggesting a different delivery route. Analyses of benthic macroinvertebrate communities were consistent with pollution trends. Collectively, these data suggest distinct agriculturally related E. coli contributions, as well as specific areas and practices for water quality improvement strategies. This study can serve as a resource for evaluating agricultural watersheds that are impaired for bacteria.

In-time source tracking of watershed loads of Taihu Lake Basin, China based on spatial relationship modeling.

PubMed

Wang, Ce; Bi, Jun; Zhang, Xu-Xiang; Fang, Qiang; Qi, Yi

2018-05-25

Influent river carrying cumulative watershed load plays a significant role in promoting nuisance algal bloom in river-fed lake. It is most relevant to discern in-stream water quality exceedance and evaluate the spatial relationship between risk location and potential pollution sources. However, no comprehensive studies of source tracking in watershed based on management grid have been conducted for refined water quality management, particularly for plain terrain with complex river network. In this study, field investigations were implemented during 2014 in Taige Canal watershed of Taihu Lake Basin. A Geographical Information System (GIS)-based spatial relationship model was established to characterize the spatial relationships of "point (point-source location and monitoring site)-line (river segment)-plane (catchment)." As a practical exemplification, in-time source tracking was triggered on April 15, 2015 at Huangnianqiao station, where TN and TP concentration violated the water quality standard (TN 4.0 mg/L, TP 0.15 mg/L). Of the target grid cells, 53 and 46 were identified as crucial areas having high pollution intensity for TN and TP pollution, respectively. The estimated non-point source load in each grid cell could be apportioned into different source types based on spatial pollution-related entity objects. We found that the non-point source load derived from rural sewage and livestock and poultry breeding accounted for more than 80% of total TN or TP load than another source type of crop farming. The approach in this study would be of great benefit to local authorities for identifying the serious polluted regions and efficiently making environmental policies to reduce watershed load.

Improved segmentation of occluded and adjoining vehicles in traffic surveillance videos

NASA Astrophysics Data System (ADS)

Juneja, Medha; Grover, Priyanka

2013-12-01

Occlusion in image processing refers to concealment of any part of the object or the whole object from view of an observer. Real time videos captured by static cameras on roads often encounter overlapping and hence, occlusion of vehicles. Occlusion in traffic surveillance videos usually occurs when an object which is being tracked is hidden by another object. This makes it difficult for the object detection algorithms to distinguish all the vehicles efficiently. Also morphological operations tend to join the close proximity vehicles resulting in formation of a single bounding box around more than one vehicle. Such problems lead to errors in further video processing, like counting of vehicles in a video. The proposed system brings forward efficient moving object detection and tracking approach to reduce such errors. The paper uses successive frame subtraction technique for detection of moving objects. Further, this paper implements the watershed algorithm to segment the overlapped and adjoining vehicles. The segmentation results have been improved by the use of noise and morphological operations.

Joint estimation of habitat dynamics and species interactions: Disturbance reduces co-occurrence of non-native predators with an endangered toad

USGS Publications Warehouse

Miller, David A.W.; Brehme, Cheryl S.; Hines, James E.; Nichols, James D.; Fisher, Robert N.

2012-01-01

1. Ecologists have long been interested in the processes that determine patterns of species occurrence and co-occurrence. Potential short-comings of many existing empirical approaches that address these questions include a reliance on patterns of occurrence at a single time point, failure to account properly for imperfect detection and treating the environment as a static variable.2. We fit detection and non-detection data collected from repeat visits using a dynamic site occupancy model that simultaneously accounts for the temporal dynamics of a focal prey species, its predators and its habitat. Our objective was to determine how disturbance and species interactions affect the co-occurrence probabilities of an endangered toad and recently introduced non-native predators in stream breeding habitats. For this, we determined statistical support for alternative processes that could affect co-occurrence frequency in the system.3. We collected occurrence data at stream segments in two watersheds where streams were largely ephemeral and one watershed dominated by perennial streams. Co-occurrence probabilities of toads with non-native predators were related to disturbance frequency, with low co-occurrence in the ephemeral watershed and high co-occurrence in the perennial watershed. This occurred because once predators were established at a site, they were rarely lost from the site except in cases when the site dried out. Once dry sites became suitable again, toads colonized them much more rapidly than predators, creating a period of predator-free space.4. We attribute the dynamics to a storage effect, where toads persisting outside the stream environment during periods of drought rapidly colonized sites when they become suitable again. Our results support that even in highly connected stream networks, temporal disturbance can structure frequencies with which breeding amphibians encounter non-native predators.5. Dynamic multi-state occupancy models are a powerful tool for rigorously examining hypotheses about inter-species and species–habitat interactions. In contrast to previous methods that infer dynamic processes based on static patterns in occupancy, the approach we took allows the dynamic processes that determine species–species and species–habitat interactions to be directly estimated.

Calculating NH3-N pollution load of wei river watershed above Huaxian section using CSLD method

NASA Astrophysics Data System (ADS)

Zhu, Lei; Song, JinXi; Liu, WanQing

2018-02-01

Huaxian Section is the last hydrological and water quality monitoring section of Weihe River Watershed. So it is taken as the research objective in this paper and NH3-N is chosen as the water quality parameter. According to the discharge characteristics of point source pollutions and non-point source pollutions, a new method to estimate pollution loads—characteristic section load (CSLD)method is suggested and point source pollution and non-point source pollution loads of Weihe River Watershed above Huaxian Section are calculated in the rainy, normal and dry season in the year 2007. The results show that the monthly point source pollution loads of Weihe River Watershed above Huaxian Section discharge stably and the monthly non-point source pollution loads of Weihe River Watershed above Huaxian Section change greatly. The non-point source pollution load proportions of total pollution load of NH3-N decrease in the normal, rainy and wet period in turn.

Observation des influences du changement du couvert forestier sur le comportement hydrologique de grands bassins versants tropicaux a l'aide de la teledetection numerique: Cas du bassin versant de Dong Nai, Viet Nam

NASA Astrophysics Data System (ADS)

Pham, Trinh Hung

Monitoring hydrological behavior of a large tropical watershed following a forest cover variation has an important role in water resource management planning as well as for forest sustainable management. Traditional methods in forest hydrology studies are Experimental watersheds, Upstream-downstream, Experimental plots, Statistical regional analysis and Watershed simulation. Those methodes have limitations for large watersheds concerning the monitoring time, the lack of input data especially about forest cover and the capacity of extrapolating results accurately in terms of large watersheds. Moreover, there is still currently a scientific debate in forest ecology on relation between water and forest. The reason of this problem comes from geographical differences in publication concerning study zones, experimental watershed size and applied methods. It gives differences in the conclusions on the influence of tropical forest cover change on the changes of outlet water and yet on the yearly runoff in terms of large watershed. In order to exceed the limitations of actual methods, to solve the difficulty of acquiring forest cover data and to have a better understanding of the relation between tropical forest cover change and hydrological behavior evolution of a large watershed, it is necessary to develop a new approach by using numeric remote sensing. We used the watershed of Dong Nai as a case study. Results show that a fusion between TM and ETM+ Landsat image series and hydro-meteorologic data allow us to observe and detect flooding trends and flooding peaks after an intensive forest cover change from 16% to 20%. Flooding frequency and flooding peaks have clearly decreased when there is an increase of the forest cover from 1983 to 1990. The influence of tropical forest cover on the hydrological behavior is varying with geographical locations of watershed. There is a significant relation between forest cover evolution and environmental facteurs as the runoff coefficient (R = 0,87) and the yearly precipitation (R = 0,93).

Accounting for disturbance history in models: using remote sensing to constrain carbon and nitrogen pool spin-up.

PubMed

Hanan, Erin J; Tague, Christina; Choate, Janet; Liu, Mingliang; Kolden, Crystal; Adam, Jennifer

2018-03-24

Disturbances such as wildfire, insect outbreaks, and forest clearing, play an important role in regulating carbon, nitrogen, and hydrologic fluxes in terrestrial watersheds. Evaluating how watersheds respond to disturbance requires understanding mechanisms that interact over multiple spatial and temporal scales. Simulation modeling is a powerful tool for bridging these scales; however, model projections are limited by uncertainties in the initial state of plant carbon and nitrogen stores. Watershed models typically use one of two methods to initialize these stores: spin-up to steady state or remote sensing with allometric relationships. Spin-up involves running a model until vegetation reaches equilibrium based on climate. This approach assumes that vegetation across the watershed has reached maturity and is of uniform age, which fails to account for landscape heterogeneity and non-steady-state conditions. By contrast, remote sensing, can provide data for initializing such conditions. However, methods for assimilating remote sensing into model simulations can also be problematic. They often rely on empirical allometric relationships between a single vegetation variable and modeled carbon and nitrogen stores. Because allometric relationships are species- and region-specific, they do not account for the effects of local resource limitation, which can influence carbon allocation (to leaves, stems, roots, etc.). To address this problem, we developed a new initialization approach using the catchment-scale ecohydrologic model RHESSys. The new approach merges the mechanistic stability of spin-up with the spatial fidelity of remote sensing. It uses remote sensing to define spatially explicit targets for one or several vegetation state variables, such as leaf area index, across a watershed. The model then simulates the growth of carbon and nitrogen stores until the defined targets are met for all locations. We evaluated this approach in a mixed pine-dominated watershed in central Idaho, and a chaparral-dominated watershed in southern California. In the pine-dominated watershed, model estimates of carbon, nitrogen, and water fluxes varied among methods, while the target-driven method increased correspondence between observed and modeled streamflow. In the chaparral watershed, where vegetation was more homogeneously aged, there were no major differences among methods. Thus, in heterogeneous, disturbance-prone watersheds, the target-driven approach shows potential for improving biogeochemical projections. © 2018 by the Ecological Society of America.

Development of an integrated ecosystem model to determine effectiveness of potential watershed management projects on improving Old Tampa Bay

Treesearch

Edward T. Sherwood; Holly Greening; Lizanne Garcia; Kris Kaufman; Tony Janicki; Ray Pribble; Brett Cunningham; Steve Peene; Jim Fitzpatrick; Kellie Dixon; Mike Wessel

2016-01-01

The Tampa Bay estuary has undergone a remarkable ecosystem recovery since the 1980s despite continued population growth within the region. However during this time, the Old Tampa Bay (OTB) segment has lagged behind the rest of the Bay’s recovery relative to improvements in overall water quality and seagrass coverage. In 2011, the Tampa Bay Estuary Program, in...

Evaluation of catchment delineation methods for the medium-resolution National Hydrography Dataset

USGS Publications Warehouse

Johnston, Craig M.; Dewald, Thomas G.; Bondelid, Timothy R.; Worstell, Bruce B.; McKay, Lucinda D.; Rea, Alan; Moore, Richard B.; Goodall, Jonathan L.

2009-01-01

Different methods for determining catchments (incremental drainage areas) for stream segments of the medium-resolution (1:100,000-scale) National Hydrography Dataset (NHD) were evaluated by the U.S. Geological Survey (USGS), in cooperation with the U.S. Environmental Protection Agency (USEPA). The NHD is a comprehensive set of digital spatial data that contains information about surface-water features (such as lakes, ponds, streams, and rivers) of the United States. The need for NHD catchments was driven primarily by the goal to estimate NHD streamflow and velocity to support water-quality modeling. The application of catchments for this purpose also demonstrates the broader value of NHD catchments for supporting landscape characterization and analysis. Five catchment delineation methods were evaluated. Four of the methods use topographic information for the delineation of the NHD catchments. These methods include the Raster Seeding Method; two variants of a method first used in a USGS New England study-one used the Watershed Boundary Dataset (WBD) and the other did not-termed the 'New England Methods'; and the Outlet Matching Method. For these topographically based methods, the elevation data source was the 30-meter (m) resolution National Elevation Dataset (NED), as this was the highest resolution available for the conterminous United States and Hawaii. The fifth method evaluated, the Thiessen Polygon Method, uses distance to the nearest NHD stream segments to determine catchment boundaries. Catchments were generated using each method for NHD stream segments within six hydrologically and geographically distinct Subbasins to evaluate the applicability of the method across the United States. The five methods were evaluated by comparing the resulting catchments with the boundaries and the computed area measurements available from several verification datasets that were developed independently using manual methods. The results of the evaluation indicated that the two New England Methods provided the most accurate catchment boundaries. The New England Method with the WBD provided the most accurate results. The time and cost to implement and apply these automated methods were also considered in ultimately selecting the methods used to produce NHD catchments for the conterminous United States and Hawaii. This study was conducted by a joint USGS-USEPA team during the 2-year period that ended in September 2004. During the following 2-year period ending in the fall of 2006, the New England Methods were used to produce NHD catchments as part of a multiagency effort to generate the NHD streamflow and velocity estimates for a suite of integrated geospatial products known as 'NHDPlus.'

A screening-level modeling approach to estimate nitrogen ...

EPA Pesticide Factsheets

This paper presents a screening-level modeling approach that can be used to rapidly estimate nutrient loading and assess numerical nutrient standard exceedance risk of surface waters leading to potential classification as impaired for designated use. It can also be used to explore best management practice (BMP) implementation to reduce loading. The modeling framework uses a hybrid statistical and process based approach to estimate source of pollutants, their transport and decay in the terrestrial and aquatic parts of watersheds. The framework is developed in the ArcGIS environment and is based on the total maximum daily load (TMDL) balance model. Nitrogen (N) is currently addressed in the framework, referred to as WQM-TMDL-N. Loading for each catchment includes non-point sources (NPS) and point sources (PS). NPS loading is estimated using export coefficient or event mean concentration methods depending on the temporal scales, i.e., annual or daily. Loading from atmospheric deposition is also included. The probability of a nutrient load to exceed a target load is evaluated using probabilistic risk assessment, by including the uncertainty associated with export coefficients of various land uses. The computed risk data can be visualized as spatial maps which show the load exceedance probability for all stream segments. In an application of this modeling approach to the Tippecanoe River watershed in Indiana, USA, total nitrogen (TN) loading and risk of standard exce

An automatic method to detect and track the glottal gap from high speed videoendoscopic images.

PubMed

Andrade-Miranda, Gustavo; Godino-Llorente, Juan I; Moro-Velázquez, Laureano; Gómez-García, Jorge Andrés

2015-10-29

The image-based analysis of the vocal folds vibration plays an important role in the diagnosis of voice disorders. The analysis is based not only on the direct observation of the video sequences, but also in an objective characterization of the phonation process by means of features extracted from the recorded images. However, such analysis is based on a previous accurate identification of the glottal gap, which is the most challenging step for a further automatic assessment of the vocal folds vibration. In this work, a complete framework to automatically segment and track the glottal area (or glottal gap) is proposed. The algorithm identifies a region of interest that is adapted along time, and combine active contours and watershed transform for the final delineation of the glottis and also an automatic procedure for synthesize different videokymograms is proposed. Thanks to the ROI implementation, our technique is robust to the camera shifting and also the objective test proved the effectiveness and performance of the approach in the most challenging scenarios that it is when exist an inappropriate closure of the vocal folds. The novelties of the proposed algorithm relies on the used of temporal information for identify an adaptive ROI and the use of watershed merging combined with active contours for the glottis delimitation. Additionally, an automatic procedure for synthesize multiline VKG by the identification of the glottal main axis is developed.

Preserving Flow Variability in Watershed Model Calibrations

EPA Science Inventory

Background/Question/Methods Although watershed modeling flow calibration techniques often emphasize a specific flow mode, ecological conditions that depend on flow-ecology relationships often emphasize a range of flow conditions. We used informal likelihood methods to investig...

A Dynamic Hydrology-Critical Zone Framework for Rainfall-triggered Landslide Hazard Prediction

NASA Astrophysics Data System (ADS)

Dialynas, Y. G.; Foufoula-Georgiou, E.; Dietrich, W. E.; Bras, R. L.

2017-12-01

Watershed-scale coupled hydrologic-stability models are still in their early stages, and are characterized by important limitations: (a) either they assume steady-state or quasi-dynamic watershed hydrology, or (b) they simulate landslide occurrence based on a simple one-dimensional stability criterion. Here we develop a three-dimensional landslide prediction framework, based on a coupled hydrologic-slope stability model and incorporation of the influence of deep critical zone processes (i.e., flow through weathered bedrock and exfiltration to the colluvium) for more accurate prediction of the timing, location, and extent of landslides. Specifically, a watershed-scale slope stability model that systematically accounts for the contribution of driving and resisting forces in three-dimensional hillslope segments was coupled with a spatially-explicit and physically-based hydrologic model. The landslide prediction framework considers critical zone processes and structure, and explicitly accounts for the spatial heterogeneity of surface and subsurface properties that control slope stability, including soil and weathered bedrock hydrological and mechanical characteristics, vegetation, and slope morphology. To test performance, the model was applied in landslide-prone sites in the US, the hydrology of which has been extensively studied. Results showed that both rainfall infiltration in the soil and groundwater exfiltration exert a strong control on the timing and magnitude of landslide occurrence. We demonstrate the extent to which three-dimensional slope destabilizing factors, which are modulated by dynamic hydrologic conditions in the soil-bedrock column, control landslide initiation at the watershed scale.

Patterns and sources of fecal coliform bacteria in three streams in Virginia, 1999-2000

USGS Publications Warehouse

Hyer, Kenneth; Moyer, Douglas

2003-01-01

Surface-water impairment by fecal coliform bacteria is a water-quality issue of national scope and importance. In Virginia, more than 175 stream segments are on the Commonwealth's 1998 303(d) list of impaired waters because of elevated concentrations of fecal coliform bacteria. These fecal coliform-impaired stream segments require the development of total maximum daily load (TMDL) and associated implementation plans, but accurate information on the sources contributing these bacteria usually is lacking. The development of defendable fecal coliform TMDLs and management plans can benefit from reliable information on the bacteria sources that are responsible for the impairment. Bacterial source tracking (BST) recently has emerged as a powerful tool for identifying the sources of fecal coliform bacteria that impair surface waters. In a demonstration of BST technology, three watersheds on Virginia's 1998 303(d) list with diverse land-use practices (and potentially diverse bacteria sources) were studied. Accotink Creek is dominated by urban land uses, Christians Creek by agricultural land uses, and Blacks Run is affected by both urban and agricultural land uses. During the 20-month field study (March 1999?October 2000), water samples were collected from each stream during a range of flow conditions and seasons. For each sample, specific conductance, dissolved oxygen concentration, pH, turbidity, flow, and water temperature were measured. Fecal coliform concentrations of each water sample were determined using the membrane filtration technique. Next, Escherichia coli (E. coli) were isolated from the fecal coliform bacteria and their sources were identified using ribotyping (a method of 'genetic fingerprinting'). Study results provide enhanced understanding of the concentrations and sources of fecal coliform bacteria in these three watersheds. Continuum sampling (sampling along the length of the streams) indicated that elevated concentrations of fecal coliform bacteria (maximum observed concentration of 290,000 colonies/100 milliliters (col/100mL) could occur along the entire length of each stream, and that the samples collected at the downstream monitoring station of each stream were generally representative of the entire upstream reach. Seasonal patterns were observed in the base-flow fecal coliform concentrations of all streams; concentrations were typically highest in the summer and lowest in the winter. Fecal coliform concentrations were lowest during periods of base flow (typically 200?2,000 col/100mL) and increased by 3?4 orders of magnitude during storm events (as high as 700,000 col/100mL). Multiple linear regression models were developed to predict fecal coliform concentrations as a function of streamflow and other water-quality parameters. The source tracking technique provided identification of bacteria contributions from diverse sources that included (but were not limited to) humans, cattle, poultry, horses, dogs, cats, geese, ducks, raccoons, and deer. Seasonal patterns were observed in the contributions of cattle and poultry sources. There were relations between the identified sources of fecal coliform bacteria and the land-use practices within each watershed. There were only minor differences in the distribution of bacteria sources between low-flow periods and high-flow periods. A coupled approach that utilized both a large available source library and a smaller, location-specific source library provided the most success in identifying the unknown E. coli isolates. BST data should provide valuable support and guidance for producing more defendable and scientifically rigorous watershed models. Incorporation of these bacteria-source data into watershed management strategies also should result in the selection of more efficient source-reduction scenarios for improving water quality.

A New Cluster Analysis-Marker-Controlled Watershed Method for Separating Particles of Granular Soils

PubMed Central

Alam, Md Ferdous

2017-01-01

An accurate determination of particle-level fabric of granular soils from tomography data requires a maximum correct separation of particles. The popular marker-controlled watershed separation method is widely used to separate particles. However, the watershed method alone is not capable of producing the maximum separation of particles when subjected to boundary stresses leading to crushing of particles. In this paper, a new separation method, named as Monash Particle Separation Method (MPSM), has been introduced. The new method automatically determines the optimal contrast coefficient based on cluster evaluation framework to produce the maximum accurate separation outcomes. Finally, the particles which could not be separated by the optimal contrast coefficient were separated by integrating cuboid markers generated from the clustering by Gaussian mixture models into the routine watershed method. The MPSM was validated on a uniformly graded sand volume subjected to one-dimensional compression loading up to 32 MPa. It was demonstrated that the MPSM is capable of producing the best possible separation of particles required for the fabric analysis. PMID:29057823

Computed tomography-based volumetric tool for standardized measurement of the maxillary sinus

PubMed Central

Giacomini, Guilherme; Pavan, Ana Luiza Menegatti; Altemani, João Mauricio Carrasco; Duarte, Sergio Barbosa; Fortaleza, Carlos Magno Castelo Branco; Miranda, José Ricardo de Arruda

2018-01-01

Volume measurements of maxillary sinus may be useful to identify diseases affecting paranasal sinuses. However, literature shows a lack of consensus in studies measuring the volume. This may be attributable to different computed tomography data acquisition techniques, segmentation methods, focuses of investigation, among other reasons. Furthermore, methods for volumetrically quantifying the maxillary sinus are commonly manual or semiautomated, which require substantial user expertise and are time-consuming. The purpose of the present study was to develop an automated tool for quantifying the total and air-free volume of the maxillary sinus based on computed tomography images. The quantification tool seeks to standardize maxillary sinus volume measurements, thus allowing better comparisons and determinations of factors that influence maxillary sinus size. The automated tool utilized image processing techniques (watershed, threshold, and morphological operators). The maxillary sinus volume was quantified in 30 patients. To evaluate the accuracy of the automated tool, the results were compared with manual segmentation that was performed by an experienced radiologist using a standard procedure. The mean percent differences between the automated and manual methods were 7.19% ± 5.83% and 6.93% ± 4.29% for total and air-free maxillary sinus volume, respectively. Linear regression and Bland-Altman statistics showed good agreement and low dispersion between both methods. The present automated tool for maxillary sinus volume assessment was rapid, reliable, robust, accurate, and reproducible and may be applied in clinical practice. The tool may be used to standardize measurements of maxillary volume. Such standardization is extremely important for allowing comparisons between studies, providing a better understanding of the role of the maxillary sinus, and determining the factors that influence maxillary sinus size under normal and pathological conditions. PMID:29304130

Assessing the Value of the Enviroscape Watershed Learning Module

ERIC Educational Resources Information Center

Edwards, Warren Patrick

2013-01-01

Scope and Method of Study: The researcher's evaluation of the West Atlanta Watershed Alliance's (WAWA) programs highlighted that few if any of the offered educational programs included a program evaluation, especially the most promising, the Enviroscape® Watershed learning module. The education programs that were customized and developed by the…

U.S. EPA'S URBAN WATERSHED RESEARCH PROGRAM IN BMPS AND RESTORATION FOR WATER QUALITY MANAGEMENT

EPA Science Inventory

The U.S. EPA's Urban Watershed Management Branch is responsible for developing and demonstrating technologies and methods required managing the risk to public health, property and the environment from wet weather flows (WWF) in urban watersheds. The activities are primarily aimed...

Investigation of computer-aided colonic crypt pattern analysis

NASA Astrophysics Data System (ADS)

Qi, Xin; Pan, Yinsheng; Sivak, Michael V., Jr.; Olowe, Kayode; Rollins, Andrew M.

2007-02-01

Colorectal cancer is the second leading cause of cancer-related death in the United States. Approximately 50% of these deaths could be prevented by earlier detection through screening. Magnification chromoendoscopy is a technique which utilizes tissue stains applied to the gastrointestinal mucosa and high-magnification endoscopy to better visualize and characterize lesions. Prior studies have shown that shapes of colonic crypts change with disease and show characteristic patterns. Current methods for assessing colonic crypt patterns are somewhat subjective and not standardized. Computerized algorithms could be used to standardize colonic crypt pattern assessment. We have imaged resected colonic mucosa in vitro (N = 70) using methylene blue dye and a surgical microscope to approximately simulate in vivo imaging with magnification chromoendoscopy. We have developed a method of computerized processing to analyze the crypt patterns in the images. The quantitative image analysis consists of three steps. First, the crypts within the region of interest of colonic tissue are semi-automatically segmented using watershed morphological processing. Second, crypt size and shape parameters are extracted from the segmented crypts. Third, each sample is assigned to a category according to the Kudo criteria. The computerized classification is validated by comparison with human classification using the Kudo classification criteria. The computerized colonic crypt pattern analysis algorithm will enable a study of in vivo magnification chromoendoscopy of colonic crypt pattern correlated with risk of colorectal cancer. This study will assess the feasibility of screening and surveillance of the colon using magnification chromoendoscopy.

Applying soil property information for watershed assessment.

NASA Astrophysics Data System (ADS)

Archer, V.; Mayn, C.; Brown, S. R.

2017-12-01

The Forest Service uses a priority watershed scheme to guide where to direct watershed restoration work. Initial assessment was done across the nation following the watershed condition framework process. This assessment method uses soils information for a three step ranking across each 12 code hydrologic unit; however, the soil information used in the assessment may not provide adequate detail to guide work on the ground. Modern remote sensing information and terrain derivatives that model the environmental gradients hold promise of showing the influence of soil forming factors on watershed processes. These small scale data products enable the disaggregation of coarse scale soils mapping to show continuous soil property information across a watershed. When this information is coupled with the geomorphic and geologic information, watershed specialists can more aptly understand the controlling influences of drainage within watersheds and focus on where watershed restoration projects can have the most success. A case study on the application of this work shows where road restoration may be most effective.

Stream classification of the Apalachicola-Chattahoochee-Flint River System to support modeling of aquatic habitat response to climate change

USGS Publications Warehouse

Elliott, Caroline M.; Jacobson, Robert B.; Freeman, Mary C.

2014-01-01

A stream classification and associated datasets were developed for the Apalachicola-Chattahoochee-Flint River Basin to support biological modeling of species response to climate change in the southeastern United States. The U.S. Geological Survey and the Department of the Interior’s National Climate Change and Wildlife Science Center established the Southeast Regional Assessment Project (SERAP) which used downscaled general circulation models to develop landscape-scale assessments of climate change and subsequent effects on land cover, ecosystems, and priority species in the southeastern United States. The SERAP aquatic and hydrologic dynamics modeling efforts involve multiscale watershed hydrology, stream-temperature, and fish-occupancy models, which all are based on the same stream network. Models were developed for the Apalachicola-Chattahoochee-Flint River Basin and subbasins in Alabama, Florida, and Georgia, and for the Upper Roanoke River Basin in Virginia. The stream network was used as the spatial scheme through which information was shared across the various models within SERAP. Because these models operate at different scales, coordinated pair versions of the network were delineated, characterized, and parameterized for coarse- and fine-scale hydrologic and biologic modeling. The stream network used for the SERAP aquatic models was extracted from a 30-meter (m) scale digital elevation model (DEM) using standard topographic analysis of flow accumulation. At the finer scale, reaches were delineated to represent lengths of stream channel with fairly homogenous physical characteristics (mean reach length = 350 m). Every reach in the network is designated with geomorphic attributes including upstream drainage basin area, channel gradient, channel width, valley width, Strahler and Shreve stream order, stream power, and measures of stream confinement. The reach network was aggregated from tributary junction to tributary junction to define segments for the benefit of hydrological, soil erosion, and coarser ecological modeling. Reach attributes are summarized for each segment. In six subbasins segments are assigned additional attributes about barriers (usually impoundments) to fish migration and stream isolation. Segments in the six sub-basins are also attributed with percent urban area for the watershed upstream from the stream segment for each decade from 2010–2100 from models of urban growth. On a broader scale, for application in a coarse-scale species-response model, the stream-network information is aggregated and summarized by 256 drainage subbasins (Hydrologic Response Units) used for watershed hydrologic and stream-temperature models. A model of soil erodibility based on the Revised Universal Soil Loss Equation also was developed at this scale to parameterize a model to evaluate stream condition. The reach-scale network was classified using multivariate clustering based on modeled channel width, valley width, and mean reach gradient as variables. The resulting classification consists of a 6-cluster and a 12-cluster classification for every reach in the Apalachicola-Chattahoochee-Flint Basin. We present an example of the utility of the classification that was tested using the occurrence of two species of darters and two species of minnows in the Apalachicola-Chattahoochee-Flint River Basin, the blackbanded darter and Halloween darter, and the bluestripe shiner and blacktail shiner.

Incorporating uncertainty into the ranking of SPARROW model nutrient yields from Mississippi/Atchafalaya River basin watersheds

USGS Publications Warehouse

Robertson, Dale M.; Schwarz, Gregory E.; Saad, David A.; Alexander, Richard B.

2009-01-01

Excessive loads of nutrients transported by tributary rivers have been linked to hypoxia in the Gulf of Mexico. Management efforts to reduce the hypoxic zone in the Gulf of Mexico and improve the water quality of rivers and streams could benefit from targeting nutrient reductions toward watersheds with the highest nutrient yields delivered to sensitive downstream waters. One challenge is that most conventional watershed modeling approaches (e.g., mechanistic models) used in these management decisions do not consider uncertainties in the predictions of nutrient yields and their downstream delivery. The increasing use of parameter estimation procedures to statistically estimate model coefficients, however, allows uncertainties in these predictions to be reliably estimated. Here, we use a robust bootstrapping procedure applied to the results of a previous application of the hybrid statistical/mechanistic watershed model SPARROW (Spatially Referenced Regression On Watershed attributes) to develop a statistically reliable method for identifying “high priority” areas for management, based on a probabilistic ranking of delivered nutrient yields from watersheds throughout a basin. The method is designed to be used by managers to prioritize watersheds where additional stream monitoring and evaluations of nutrient-reduction strategies could be undertaken. Our ranking procedure incorporates information on the confidence intervals of model predictions and the corresponding watershed rankings of the delivered nutrient yields. From this quantified uncertainty, we estimate the probability that individual watersheds are among a collection of watersheds that have the highest delivered nutrient yields. We illustrate the application of the procedure to 818 eight-digit Hydrologic Unit Code watersheds in the Mississippi/Atchafalaya River basin by identifying 150 watersheds having the highest delivered nutrient yields to the Gulf of Mexico. Highest delivered yields were from watersheds in the Central Mississippi, Ohio, and Lower Mississippi River basins. With 90% confidence, only a few watersheds can be reliably placed into the highest 150 category; however, many more watersheds can be removed from consideration as not belonging to the highest 150 category. Results from this ranking procedure provide robust information on watershed nutrient yields that can benefit management efforts to reduce nutrient loadings to downstream coastal waters, such as the Gulf of Mexico, or to local receiving streams and reservoirs.

[New paradigm for soil and water conservation: a method based on watershed process modeling and scenario analysis].

PubMed

Zhu, A-Xing; Chen, La-Jiao; Qin, Cheng-Zhi; Wang, Ping; Liu, Jun-Zhi; Li, Run-Kui; Cai, Qiang-Guo

2012-07-01

With the increase of severe soil erosion problem, soil and water conservation has become an urgent concern for sustainable development. Small watershed experimental observation is the traditional paradigm for soil and water control. However, the establishment of experimental watershed usually takes long time, and has the limitations of poor repeatability and high cost. Moreover, the popularization of the results from the experimental watershed is limited for other areas due to the differences in watershed conditions. Therefore, it is not sufficient to completely rely on this old paradigm for soil and water loss control. Recently, scenario analysis based on watershed modeling has been introduced into watershed management, which can provide information about the effectiveness of different management practices based on the quantitative simulation of watershed processes. Because of its merits such as low cost, short period, and high repeatability, scenario analysis shows great potential in aiding the development of watershed management strategy. This paper elaborated a new paradigm using watershed modeling and scenario analysis for soil and water conservation, illustrated this new paradigm through two cases for practical watershed management, and explored the future development of this new soil and water conservation paradigm.

Revised method and outcomes for estimating soil phosphorus losses from agricultural land in the Chesapeake Bay watershed model

USDA-ARS?s Scientific Manuscript database

Current restoration efforts for the Chesapeake Bay watershed mandate a timeline for reducing the load of nutrients and sediment to receiving waters. The Chesapeake Bay Watershed Model (WSM) has been used for two decades to simulate hydrology and nutrient and sediment transport; however, spatial limi...

Tracing sediment movement on semi-arid watershed using Rare Earth Elements 1988

USDA-ARS?s Scientific Manuscript database

A multi-tracer method employing rare earth elements (REE) was used to determine sediment yield and to track sediment movement in a small semiarid watershed. A 0.33 ha watershed near Tombstone, AZ was divided into five morphological units, each tagged with one of five REE oxides. Relative contributi...

A New DEM Generalization Method Based on Watershed and Tree Structure

PubMed Central

Chen, Yonggang; Ma, Tianwu; Chen, Xiaoyin; Chen, Zhende; Yang, Chunju; Lin, Chenzhi; Shan, Ligang

2016-01-01

The DEM generalization is the basis of multi-dimensional observation, the basis of expressing and analyzing the terrain. DEM is also the core of building the Multi-Scale Geographic Database. Thus, many researchers have studied both the theory and the method of DEM generalization. This paper proposed a new method of generalizing terrain, which extracts feature points based on the tree model construction which considering the nested relationship of watershed characteristics. The paper used the 5 m resolution DEM of the Jiuyuan gully watersheds in the Loess Plateau as the original data and extracted the feature points in every single watershed to reconstruct the DEM. The paper has achieved generalization from 1:10000 DEM to 1:50000 DEM by computing the best threshold. The best threshold is 0.06. In the last part of the paper, the height accuracy of the generalized DEM is analyzed by comparing it with some other classic methods, such as aggregation, resample, and VIP based on the original 1:50000 DEM. The outcome shows that the method performed well. The method can choose the best threshold according to the target generalization scale to decide the density of the feature points in the watershed. Meanwhile, this method can reserve the skeleton of the terrain, which can meet the needs of different levels of generalization. Additionally, through overlapped contour contrast, elevation statistical parameters and slope and aspect analysis, we found out that the W8D algorithm performed well and effectively in terrain representation. PMID:27517296

A Regionalized Flow Duration Curve Method to Predict Streamflow for Ungauaged Basins: A Case Study of the Rappahannock Watershed in Virginia, USA

EPA Science Inventory

A method to predict streamflow for ungauged basins of the Mid-Atlantic Region, USA was applied to the Rappahannock watershed in Virginia, USA. The method separates streamflow time series into magnitude and time sequence components. It uses the regionalized flow duration curve (RF...

Modeling potential evapotranspiration of two forested watersheds in the southern Appalachians

Treesearch

L.Y. Rao; G. Sun; C.R. Ford; J.M. Vose

2011-01-01

Global climate change has direct impacts on watershed hydrology through altering evapotranspiration (ET) processes at multiple scales. There are many methods to estimate forest ET with models, but the most practical and the most popular one is the potential ET (PET) based method. However, the choice of PET methods for AET estimation remains challenging. This study...

Microbial Source Module (MSM): Documenting the Science ...

EPA Pesticide Factsheets

The Microbial Source Module (MSM) estimates microbial loading rates to land surfaces from non-point sources, and to streams from point sources for each subwatershed within a watershed. A subwatershed, the smallest modeling unit, represents the common basis for information consumed and produced by the MSM which is based on the HSPF (Bicknell et al., 1997) Bacterial Indicator Tool (EPA, 2013b, 2013c). Non-point sources include numbers, locations, and shedding rates of domestic agricultural animals (dairy and beef cows, swine, poultry, etc.) and wildlife (deer, duck, raccoon, etc.). Monthly maximum microbial storage and accumulation rates on the land surface, adjusted for die-off, are computed over an entire season for four land-use types (cropland, pasture, forest, and urbanized/mixed-use) for each subwatershed. Monthly point source microbial loadings to instream locations (i.e., stream segments that drain individual sub-watersheds) are combined and determined for septic systems, direct instream shedding by cattle, and POTWs/WWTPs (Publicly Owned Treatment Works/Wastewater Treatment Plants). The MSM functions within a larger modeling system that characterizes human-health risk resulting from ingestion of water contaminated with pathogens. The loading estimates produced by the MSM are input to the HSPF model that simulates flow and microbial fate/transport within a watershed. Microbial counts within recreational waters are then input to the MRA-IT model (Soller et

Segmentation Approach Towards Phase-Contrast Microscopic Images of Activated Sludge to Monitor the Wastewater Treatment.

PubMed

Khan, Muhammad Burhan; Nisar, Humaira; Ng, Choon Aun; Yeap, Kim Ho; Lai, Koon Chun

2017-12-01

Image processing and analysis is an effective tool for monitoring and fault diagnosis of activated sludge (AS) wastewater treatment plants. The AS image comprise of flocs (microbial aggregates) and filamentous bacteria. In this paper, nine different approaches are proposed for image segmentation of phase-contrast microscopic (PCM) images of AS samples. The proposed strategies are assessed for their effectiveness from the perspective of microscopic artifacts associated with PCM. The first approach uses an algorithm that is based on the idea that different color space representation of images other than red-green-blue may have better contrast. The second uses an edge detection approach. The third strategy, employs a clustering algorithm for the segmentation and the fourth applies local adaptive thresholding. The fifth technique is based on texture-based segmentation and the sixth uses watershed algorithm. The seventh adopts a split-and-merge approach. The eighth employs Kittler's thresholding. Finally, the ninth uses a top-hat and bottom-hat filtering-based technique. The approaches are assessed, and analyzed critically with reference to the artifacts of PCM. Gold approximations of ground truth images are prepared to assess the segmentations. Overall, the edge detection-based approach exhibits the best results in terms of accuracy, and the texture-based algorithm in terms of false negative ratio. The respective scenarios are explained for suitability of edge detection and texture-based algorithms.

An auxiliary method to reduce potential adverse impacts of projected land developments: subwatershed prioritization.

PubMed

Kalin, Latif; Hantush, Mohamed M

2009-02-01

An index based method is developed that ranks the subwatersheds of a watershed based on their relative impacts on watershed response to anticipated land developments, and then applied to an urbanizing watershed in Eastern Pennsylvania. Simulations with a semi-distributed hydrologic model show that computed low- and high-flow frequencies at the main outlet increase significantly with the projected landscape changes in the watershed. The developed index is utilized to prioritize areas in the urbanizing watershed based on their contributions to alterations in the magnitude of selected flow characteristics at two spatial resolutions. The low-flow measure, 7Q10, rankings are shown to mimic the spatial trend of groundwater recharge rates, whereas average annual maximum daily flow, QAMAX, and average monthly median of daily flows, QMMED, rankings are influenced by both recharge and proximity to watershed outlet. Results indicate that, especially with the higher resolution, areas having quicker responses are not necessarily the more critical areas for high-flow scenarios. Subwatershed rankings are shown to vary slightly with the location of water quality/quantity criteria enforcement. It is also found that rankings of subwatersheds upstream from the site of interest, which could be the main outlet or any interior point in the watershed, may be influenced by the time scale of the hydrologic processes.

Watershed Planning within a Quantitative Scenario Analysis Framework.

PubMed

Merriam, Eric R; Petty, J Todd; Strager, Michael P

2016-07-24

There is a critical need for tools and methodologies capable of managing aquatic systems within heavily impacted watersheds. Current efforts often fall short as a result of an inability to quantify and predict complex cumulative effects of current and future land use scenarios at relevant spatial scales. The goal of this manuscript is to provide methods for conducting a targeted watershed assessment that enables resource managers to produce landscape-based cumulative effects models for use within a scenario analysis management framework. Sites are first selected for inclusion within the watershed assessment by identifying sites that fall along independent gradients and combinations of known stressors. Field and laboratory techniques are then used to obtain data on the physical, chemical, and biological effects of multiple land use activities. Multiple linear regression analysis is then used to produce landscape-based cumulative effects models for predicting aquatic conditions. Lastly, methods for incorporating cumulative effects models within a scenario analysis framework for guiding management and regulatory decisions (e.g., permitting and mitigation) within actively developing watersheds are discussed and demonstrated for 2 sub-watersheds within the mountaintop mining region of central Appalachia. The watershed assessment and management approach provided herein enables resource managers to facilitate economic and development activity while protecting aquatic resources and producing opportunity for net ecological benefits through targeted remediation.

Optimal Subdivision for Treatment and Management of Catastrophic Landslides in a Watershed Using Topographic Factors.

PubMed

Lin, Chao-Yuan; Fu, Kuei-Lin; Lin, Cheng-Yu

2016-11-01

Recent extreme rainfall events led to many landslides due to climate changes in Taiwan. How to effectively promote post-disaster treatment and/or management works in a watershed/drainage basin is a crucial issue. Regarding the processes of watershed treatment and/or management works, disaster hotspot scanning and treatment priority setup should be carried out in advance. A scanning method using landslide ratio to determine the appropriate outlet of an interested watershed, and an optimal subdivision system with better homogeneity and accuracy in landslide ratio estimation were developed to help efficient executions of treatment and/or management works. Topography is a key factor affecting watershed landslide ratio. Considering the complexity and uncertainty of the natural phenomenon, multivariate analysis was applied to understand the relationship between topographic factors and landslide ratio in the interested watershed. The concept of species-area curve, which is usually adopted at on-site vegetation investigation to determinate the suitable quadrate size, was used to derive the optimal threshold in subdivisions. Results show that three main component axes including factors of scale, network and shape extracted from Digital Terrain Model coupled with areas of landslide can effectively explain the characteristics of landslide ratio in the interested watershed, and a relation curve obtained from the accuracy of landslide ratio classification and number of subdivisions could be established to derive optimal subdivision of the watershed. The subdivision method promoted in this study could be further used for priority rank and benefit assessment of landslide treatment in a watershed.

Optimal Subdivision for Treatment and Management of Catastrophic Landslides in a Watershed Using Topographic Factors

NASA Astrophysics Data System (ADS)

Lin, Chao-Yuan; Fu, Kuei-Lin; Lin, Cheng-Yu

2016-11-01

Recent extreme rainfall events led to many landslides due to climate changes in Taiwan. How to effectively promote post-disaster treatment and/or management works in a watershed/drainage basin is a crucial issue. Regarding the processes of watershed treatment and/or management works, disaster hotspot scanning and treatment priority setup should be carried out in advance. A scanning method using landslide ratio to determine the appropriate outlet of an interested watershed, and an optimal subdivision system with better homogeneity and accuracy in landslide ratio estimation were developed to help efficient executions of treatment and/or management works. Topography is a key factor affecting watershed landslide ratio. Considering the complexity and uncertainty of the natural phenomenon, multivariate analysis was applied to understand the relationship between topographic factors and landslide ratio in the interested watershed. The concept of species-area curve, which is usually adopted at on-site vegetation investigation to determinate the suitable quadrate size, was used to derive the optimal threshold in subdivisions. Results show that three main component axes including factors of scale, network and shape extracted from Digital Terrain Model coupled with areas of landslide can effectively explain the characteristics of landslide ratio in the interested watershed, and a relation curve obtained from the accuracy of landslide ratio classification and number of subdivisions could be established to derive optimal subdivision of the watershed. The subdivision method promoted in this study could be further used for priority rank and benefit assessment of landslide treatment in a watershed.

Watershed-based survey designs

USGS Publications Warehouse

Detenbeck, N.E.; Cincotta, D.; Denver, J.M.; Greenlee, S.K.; Olsen, A.R.; Pitchford, A.M.

2005-01-01

Watershed-based sampling design and assessment tools help serve the multiple goals for water quality monitoring required under the Clean Water Act, including assessment of regional conditions to meet Section 305(b), identification of impaired water bodies or watersheds to meet Section 303(d), and development of empirical relationships between causes or sources of impairment and biological responses. Creation of GIS databases for hydrography, hydrologically corrected digital elevation models, and hydrologic derivatives such as watershed boundaries and upstream–downstream topology of subcatchments would provide a consistent seamless nationwide framework for these designs. The elements of a watershed-based sample framework can be represented either as a continuous infinite set defined by points along a linear stream network, or as a discrete set of watershed polygons. Watershed-based designs can be developed with existing probabilistic survey methods, including the use of unequal probability weighting, stratification, and two-stage frames for sampling. Case studies for monitoring of Atlantic Coastal Plain streams, West Virginia wadeable streams, and coastal Oregon streams illustrate three different approaches for selecting sites for watershed-based survey designs.

Using a topographic index to distribute variable source area runoff predicted with the SCS curve-number equation

NASA Astrophysics Data System (ADS)

Lyon, Steve W.; Walter, M. Todd; Gérard-Marchant, Pierre; Steenhuis, Tammo S.

2004-10-01

Because the traditional Soil Conservation Service curve-number (SCS-CN) approach continues to be used ubiquitously in water quality models, new application methods are needed that are consistent with variable source area (VSA) hydrological processes in the landscape. We developed and tested a distributed approach for applying the traditional SCS-CN equation to watersheds where VSA hydrology is a dominant process. Predicting the location of source areas is important for watershed planning because restricting potentially polluting activities from runoff source areas is fundamental to controlling non-point-source pollution. The method presented here used the traditional SCS-CN approach to predict runoff volume and spatial extent of saturated areas and a topographic index, like that used in TOPMODEL, to distribute runoff source areas through watersheds. The resulting distributed CN-VSA method was applied to two subwatersheds of the Delaware basin in the Catskill Mountains region of New York State and one watershed in south-eastern Australia to produce runoff-probability maps. Observed saturated area locations in the watersheds agreed with the distributed CN-VSA method. Results showed good agreement with those obtained from the previously validated soil moisture routing (SMR) model. When compared with the traditional SCS-CN method, the distributed CN-VSA method predicted a similar total volume of runoff, but vastly different locations of runoff generation. Thus, the distributed CN-VSA approach provides a physically based method that is simple enough to be incorporated into water quality models, and other tools that currently use the traditional SCS-CN method, while still adhering to the principles of VSA hydrology.

First progress report, 1961-1962, cooperative watershed management in the lower conifer zone of California

Treesearch

Walt Hopkins; Kenneth L. Boden

1962-01-01

The job of watershed management research is to conduct studies which will suggest better methods of management for water and predict the effects of a wide span of land management practices upon streamflow, water yield, and sedimentation. A program for watershed management research was prepared by Henry Anderson in 1960 (Anderson, 1960).

Using Ion-Exchange Resins to Study Soil Response to Experimental Watershed Acidification

Treesearch

Johanna E. Szillery; Ivan J. Fernandez; Stephen A. Norton; Lindsey E. Rustad; Alan S. White

2006-01-01

Ion-exchange resins (IER) offer alternative approaches to measuring ionic movement in soils that may have advantages over traditional approaches in some settings, but more information is needed to understand how IER compare with traditional methods of measurement in forested ecosystems. At the Bear BrookWatershed in Maine (BBWM), one of two paired, forested watersheds...

Scientific and technical advisory committee review of the nutrient inputs to the watershed model

USDA-ARS?s Scientific Manuscript database

The following is a report by a STAC Review Team concerning the methods and documentation used by the Chesapeake Bay Partnership for evaluation of nutrient inputs to Phase 6 of the Chesapeake Bay Watershed Model. The “STAC Review of the Nutrient Inputs to the Watershed Model” (previously referred to...

Evaluating water management strategies in watersheds by new hybrid Fuzzy Analytical Network Process (FANP) methods

NASA Astrophysics Data System (ADS)

RazaviToosi, S. L.; Samani, J. M. V.

2016-03-01

Watersheds are considered as hydrological units. Their other important aspects such as economic, social and environmental functions play crucial roles in sustainable development. The objective of this work is to develop methodologies to prioritize watersheds by considering different development strategies in environmental, social and economic sectors. This ranking could play a significant role in management to assign the most critical watersheds where by employing water management strategies, best condition changes are expected to be accomplished. Due to complex relations among different criteria, two new hybrid fuzzy ANP (Analytical Network Process) algorithms, fuzzy TOPSIS (Technique for Order Preference by Similarity to Ideal Solution) and fuzzy max-min set methods are used to provide more flexible and accurate decision model. Five watersheds in Iran named Oroomeyeh, Atrak, Sefidrood, Namak and Zayandehrood are considered as alternatives. Based on long term development goals, 38 water management strategies are defined as subcriteria in 10 clusters. The main advantage of the proposed methods is its ability to overcome uncertainty. This task is accomplished by using fuzzy numbers in all steps of the algorithms. To validate the proposed method, the final results were compared with those obtained from the ANP algorithm and the Spearman rank correlation coefficient is applied to find the similarity in the different ranking methods. Finally, the sensitivity analysis was conducted to investigate the influence of cluster weights on the final ranking.

Fully automated MR liver volumetry using watershed segmentation coupled with active contouring.

PubMed

Huynh, Hieu Trung; Le-Trong, Ngoc; Bao, Pham The; Oto, Aytek; Suzuki, Kenji

2017-02-01

Our purpose is to develop a fully automated scheme for liver volume measurement in abdominal MR images, without requiring any user input or interaction. The proposed scheme is fully automatic for liver volumetry from 3D abdominal MR images, and it consists of three main stages: preprocessing, rough liver shape generation, and liver extraction. The preprocessing stage reduced noise and enhanced the liver boundaries in 3D abdominal MR images. The rough liver shape was revealed fully automatically by using the watershed segmentation, thresholding transform, morphological operations, and statistical properties of the liver. An active contour model was applied to refine the rough liver shape to precisely obtain the liver boundaries. The liver volumes calculated by the proposed scheme were compared to the "gold standard" references which were estimated by an expert abdominal radiologist. The liver volumes computed by using our developed scheme excellently agreed (Intra-class correlation coefficient was 0.94) with the "gold standard" manual volumes by the radiologist in the evaluation with 27 cases from multiple medical centers. The running time was 8.4 min per case on average. We developed a fully automated liver volumetry scheme in MR, which does not require any interaction by users. It was evaluated with cases from multiple medical centers. The liver volumetry performance of our developed system was comparable to that of the gold standard manual volumetry, and it saved radiologists' time for manual liver volumetry of 24.7 min per case.

Impacts of correcting the inter-variable correlation of climate model outputs on hydrological modeling

NASA Astrophysics Data System (ADS)

Chen, Jie; Li, Chao; Brissette, François P.; Chen, Hua; Wang, Mingna; Essou, Gilles R. C.

2018-05-01

Bias correction is usually implemented prior to using climate model outputs for impact studies. However, bias correction methods that are commonly used treat climate variables independently and often ignore inter-variable dependencies. The effects of ignoring such dependencies on impact studies need to be investigated. This study aims to assess the impacts of correcting the inter-variable correlation of climate model outputs on hydrological modeling. To this end, a joint bias correction (JBC) method which corrects the joint distribution of two variables as a whole is compared with an independent bias correction (IBC) method; this is considered in terms of correcting simulations of precipitation and temperature from 26 climate models for hydrological modeling over 12 watersheds located in various climate regimes. The results show that the simulated precipitation and temperature are considerably biased not only in the individual distributions, but also in their correlations, which in turn result in biased hydrological simulations. In addition to reducing the biases of the individual characteristics of precipitation and temperature, the JBC method can also reduce the bias in precipitation-temperature (P-T) correlations. In terms of hydrological modeling, the JBC method performs significantly better than the IBC method for 11 out of the 12 watersheds over the calibration period. For the validation period, the advantages of the JBC method are greatly reduced as the performance becomes dependent on the watershed, GCM and hydrological metric considered. For arid/tropical and snowfall-rainfall-mixed watersheds, JBC performs better than IBC. For snowfall- or rainfall-dominated watersheds, however, the two methods behave similarly, with IBC performing somewhat better than JBC. Overall, the results emphasize the advantages of correcting the P-T correlation when using climate model-simulated precipitation and temperature to assess the impact of climate change on watershed hydrology. However, a thorough validation and a comparison with other methods are recommended before using the JBC method, since it may perform worse than the IBC method for some cases due to bias nonstationarity of climate model outputs.

Advancing computational methods for calibration of the Soil and Water Assessment Tool (SWAT): Application for modeling climate change impacts on water resources in the Upper Neuse Watershed of North Carolina

NASA Astrophysics Data System (ADS)

Ercan, Mehmet Bulent

Watershed-scale hydrologic models are used for a variety of applications from flood prediction, to drought analysis, to water quality assessments. A particular challenge in applying these models is calibration of the model parameters, many of which are difficult to measure at the watershed-scale. A primary goal of this dissertation is to contribute new computational methods and tools for calibration of watershed-scale hydrologic models and the Soil and Water Assessment Tool (SWAT) model, in particular. SWAT is a physically-based, watershed-scale hydrologic model developed to predict the impact of land management practices on water quality and quantity. The dissertation follows a manuscript format meaning it is comprised of three separate but interrelated research studies. The first two research studies focus on SWAT model calibration, and the third research study presents an application of the new calibration methods and tools to study climate change impacts on water resources in the Upper Neuse Watershed of North Carolina using SWAT. The objective of the first two studies is to overcome computational challenges associated with calibration of SWAT models. The first study evaluates a parallel SWAT calibration tool built using the Windows Azure cloud environment and a parallel version of the Dynamically Dimensioned Search (DDS) calibration method modified to run in Azure. The calibration tool was tested for six model scenarios constructed using three watersheds of increasing size (the Eno, Upper Neuse, and Neuse) for both a 2 year and 10 year simulation duration. Leveraging the cloud as an on demand computing resource allowed for a significantly reduced calibration time such that calibration of the Neuse watershed went from taking 207 hours on a personal computer to only 3.4 hours using 256 cores in the Azure cloud. The second study aims at increasing SWAT model calibration efficiency by creating an open source, multi-objective calibration tool using the Non-Dominated Sorting Genetic Algorithm II (NSGA-II). This tool was demonstrated through an application for the Upper Neuse Watershed in North Carolina, USA. The objective functions used for the calibration were Nash-Sutcliffe (E) and Percent Bias (PB), and the objective sites were the Flat, Little, and Eno watershed outlets. The results show that the use of multi-objective calibration algorithms for SWAT calibration improved model performance especially in terms of minimizing PB compared to the single objective model calibration. The third study builds upon the first two studies by leveraging the new calibration methods and tools to study future climate impacts on the Upper Neuse watershed. Statistically downscaled outputs from eight Global Circulation Models (GCMs) were used for both low and high emission scenarios to drive a well calibrated SWAT model of the Upper Neuse watershed. The objective of the study was to understand the potential hydrologic response of the watershed, which serves as a public water supply for the growing Research Triangle Park region of North Carolina, under projected climate change scenarios. The future climate change scenarios, in general, indicate an increase in precipitation and temperature for the watershed in coming decades. The SWAT simulations using the future climate scenarios, in general, suggest an increase in soil water and water yield, and a decrease in evapotranspiration within the Upper Neuse watershed. In summary, this dissertation advances the field of watershed-scale hydrologic modeling by (i) providing some of the first work to apply cloud computing for the computationally-demanding task of model calibration; (ii) providing a new, open source library that can be used by SWAT modelers to perform multi-objective calibration of their models; and (iii) advancing understanding of climate change impacts on water resources for an important watershed in the Research Triangle Park region of North Carolina. The third study leveraged the methodological advances presented in the first two studies. Therefore, the dissertation contains three independent by interrelated studies that collectively advance the field of watershed-scale hydrologic modeling and analysis.

Multisite-multivariable sensitivity analysis of distributed watershed models: enhancing the perceptions from computationally frugal methods

USDA-ARS?s Scientific Manuscript database

This paper assesses the impact of different likelihood functions in identifying sensitive parameters of the highly parameterized, spatially distributed Soil and Water Assessment Tool (SWAT) watershed model for multiple variables at multiple sites. The global one-factor-at-a-time (OAT) method of Morr...

Runoff Curve Numbers from Ten, Small Forested Watersheds in the Mountains of the Eastern United States

EPA Science Inventory

Engineers and hydrologists use the curve number method to estimate runoff from rainfall for different land use and soil conditions; however, large uncertainties occur for estimates from forested watersheds. This investigation evaluates the accuracy and consistency of the method u...

Hydrologic impacts of climate change and urbanization in Las Vegas Wash Watershed, Nevada

EPA Science Inventory

In this study, a cell-based model for the Las Vegas Wash (LVW) Watershed in Clark County, Nevada, was developed by combining the traditional hydrologic modeling methods (Thornthwaite’s water balance model and the Soil Conservation Survey’s Curve Number method) with the pixel-base...

Comparison and applicability of landslide susceptibility models based on landslide ratio-based logistic regression, frequency ratio, weight of evidence, and instability index methods in an extreme rainfall event

NASA Astrophysics Data System (ADS)

Wu, Chunhung

2016-04-01

Few researches have discussed about the applicability of applying the statistical landslide susceptibility (LS) model for extreme rainfall-induced landslide events. The researches focuses on the comparison and applicability of LS models based on four methods, including landslide ratio-based logistic regression (LRBLR), frequency ratio (FR), weight of evidence (WOE), and instability index (II) methods, in an extreme rainfall-induced landslide cases. The landslide inventory in the Chishan river watershed, Southwestern Taiwan, after 2009 Typhoon Morakot is the main materials in this research. The Chishan river watershed is a tributary watershed of Kaoping river watershed, which is a landslide- and erosion-prone watershed with the annual average suspended load of 3.6×107 MT/yr (ranks 11th in the world). Typhoon Morakot struck Southern Taiwan from Aug. 6-10 in 2009 and dumped nearly 2,000 mm of rainfall in the Chishan river watershed. The 24-hour, 48-hour, and 72-hours accumulated rainfall in the Chishan river watershed exceeded the 200-year return period accumulated rainfall. 2,389 landslide polygons in the Chishan river watershed were extracted from SPOT 5 images after 2009 Typhoon Morakot. The total landslide area is around 33.5 km2, equals to the landslide ratio of 4.1%. The main landslide types based on Varnes' (1978) classification are rotational and translational slides. The two characteristics of extreme rainfall-induced landslide event are dense landslide distribution and large occupation of downslope landslide areas owing to headward erosion and bank erosion in the flooding processes. The area of downslope landslide in the Chishan river watershed after 2009 Typhoon Morakot is 3.2 times higher than that of upslope landslide areas. The prediction accuracy of LS models based on LRBLR, FR, WOE, and II methods have been proven over 70%. The model performance and applicability of four models in a landslide-prone watershed with dense distribution of rainfall-induced landslide are interesting and meaningful. Eight landslide-related factors, including elevation, slope, aspect, geology, accumulated rainfall during 2009 Typhoon Morakot, landuse, distance to the fault, and distance to the rivers, were considered in this research. The research builds and compares the difference of the LS maps based on four methods. The average LS value from each method is 0.27 for LRBLR, 0.368 for FR, 0.553 for WOE, and 0.498 for II. The correlation analysis was conducted to identify similarities between the four LS maps. The correlation coefficients are 0.913, 0.829, 0.930, 0.756, 0.729, and 0.652 for the LRBLR vs FR, LRBLR vs WOE, FR vs WOE, LRBLR vs II, FR vs II, and WOE vs II. The research compares the model performance of four LS maps by calculating the AUC value (area under the ROC curve) and ACR value (average correct-predicted ratio). The AUC values of LS maps based on LRBLR, FR, WOE, and II methods are 0.819, 0.819, 0.822 and 0.785. The ACR values of LS maps based on LRBLR, FR, WOE, and II methods are 75.1%, 73.7%, 68.4%, and 64.2%. The results indicate that the model performance based on LRBLR method in an extreme rainfall-landslide event is better than that based on the other three methods.

Variation of Runoff and Precipitation in the Hekou-Longmen Region of the Yellow River Based on Elasticity Analysis

PubMed Central

Li, Erhui; Mu, Xingmin; Zhao, Guangju; Gao, Peng; Shao, Hongbo

2014-01-01

Precipitation is very important to the formation of runoff, and studying of runoff variation and its response to precipitation has practical significance to sustainable utilization of water resources. The study used Mann-Kendall test, anomaly accumulation method, and precipitation elasticity of runoff method to analyze the changes in the relation of precipitation and runoff and the contribution of precipitation to runoff change in the Hekou-Longmen region (from 1957 to 2010), Huangfuchuan watershed (from 1954 to 2010), and Yanhe watershed (from 1952 to 2010) in the middle reaches of the Yellow River. The results showed that runoff appeared a significant decreasing trend (P = 0.01) while it was not significant in precipitation in all study areas. In particular, the reductions of average annual runoff in the Hekou-Longmen region, Huangfuchuan watershed, and Yanhe watershed were 72.7%, 87.5%, and 32.2%, respectively, during 2000–2010 compared to the 1950s. There existed two abrupt change points of the runoff in the Hekou-Longmen region and Huangfuchuan watershed, which were detected in 1979 and 1998. But in the Yanhe watershed only one abrupt change point was found in 1996. The precipitation elasticities of runoff were 1.11, 1.09, and 1.26, respectively, and the contributions of precipitation on runoff reduction were 26.4%, 17.9%, and 31.6%, respectively, in the Hekou-Longmen region, Huangfuchuan watershed, and Yanhe watershed. PMID:24955424

Variation of runoff and precipitation in the Hekou-Longmen region of the Yellow River based on elasticity analysis.

PubMed

Li, Erhui; Mu, Xingmin; Zhao, Guangju; Gao, Peng; Shao, Hongbo

2014-01-01

Precipitation is very important to the formation of runoff, and studying of runoff variation and its response to precipitation has practical significance to sustainable utilization of water resources. The study used Mann-Kendall test, anomaly accumulation method, and precipitation elasticity of runoff method to analyze the changes in the relation of precipitation and runoff and the contribution of precipitation to runoff change in the Hekou-Longmen region (from 1957 to 2010), Huangfuchuan watershed (from 1954 to 2010), and Yanhe watershed (from 1952 to 2010) in the middle reaches of the Yellow River. The results showed that runoff appeared a significant decreasing trend (P = 0.01) while it was not significant in precipitation in all study areas. In particular, the reductions of average annual runoff in the Hekou-Longmen region, Huangfuchuan watershed, and Yanhe watershed were 72.7%, 87.5%, and 32.2%, respectively, during 2000-2010 compared to the 1950s. There existed two abrupt change points of the runoff in the Hekou-Longmen region and Huangfuchuan watershed, which were detected in 1979 and 1998. But in the Yanhe watershed only one abrupt change point was found in 1996. The precipitation elasticities of runoff were 1.11, 1.09, and 1.26, respectively, and the contributions of precipitation on runoff reduction were 26.4%, 17.9%, and 31.6%, respectively, in the Hekou-Longmen region, Huangfuchuan watershed, and Yanhe watershed.

Using geostatistical methods to estimate snow water equivalence distribution in a mountain watershed

USGS Publications Warehouse

Balk, B.; Elder, K.; Baron, Jill S.

1998-01-01

Knowledge of the spatial distribution of snow water equivalence (SWE) is necessary to adequately forecast the volume and timing of snowmelt runoff.  In April 1997, peak accumulation snow depth and density measurements were independently taken in the Loch Vale watershed (6.6 km2), Rocky Mountain National Park, Colorado.  Geostatistics and classical statistics were used to estimate SWE distribution across the watershed.  Snow depths were spatially distributed across the watershed through kriging interpolation methods which provide unbiased estimates that have minimum variances.  Snow densities were spatially modeled through regression analysis.  Combining the modeled depth and density with snow-covered area (SCA produced an estimate of the spatial distribution of SWE.  The kriged estimates of snow depth explained 37-68% of the observed variance in the measured depths.  Steep slopes, variably strong winds, and complex energy balance in the watershed contribute to a large degree of heterogeneity in snow depth.

[Influence of land use change on dissolved organic carbon export in Naoli River watershed. Northeast China].

PubMed

Yin, Xiao-min; Lyu, Xian-guo; Liu, Xing-tu; Xue, Zhen-shan

2015-12-01

The present study was conducted to evaluate the influence of land use change on dissolved organic carbon (DOC) export in Naoli River watershed, Northeast China. Seasonal variation of DOC concentrations of the river water and its relationship with land use in the whole watershed and 100 m riparian zone at the annual average scale were analyzed using the method of field sampling, laboratory analysis, GIS and statistics analysis. The results showed that the concentrations of DOC under base flow conditions in spring and summer were significantly higher than that in fall in the study watershed. The seasonal trend of DOC concentrations in wetland-watersheds was similar to that in all the sub-watersheds, while significantly different from that in non-wetland watersheds. On the annual average scale, percentage of wetland in the whole watershed and paddy field in the 100 m riparian zone had positive relationship with the DOC concentration in the river water, while percentage of forest in the whole watershed had negative relationship with it (P < 0.05). It indicated that wetland in the sub-watershed played a significant role in the seasonal variation of DOC in river water of Naoli River watershed. Wetland in the watershed and paddy field in the 100 m riparian zone significantly promoted DOC export, while forest alleviated it. Land use change in the watershed in the past few decades dramatically changed the DOC balance of river water.

Relation between relief and crustal structure in the Cantabrian Mountains (Spain) using DEM-GIS analysis

NASA Astrophysics Data System (ADS)

Llana-Fúnez, Sergio; Rodríguez-Rodríguez, Laura; Ballesteros, Daniel; María Díaz-Díaz, Luis; Valenzuela, Pablo; López-Fernández, Carlos; José Domínguez-Cuesta, María; Meléndez, Mónica; Jiménez-Sánchez, Montserrat; Fernández-Viejo, Gabriela

2017-04-01

The Cantabrian Mountains show a linear E-W trend parallel to the northern coast of Iberia peninsula, from the Pyrenees to Galicia, where it looses its trend and linearity. The western end of the linear segment of the orogen coincides with a change in the style of structures, accommodating the N-S shortening during the convergence between Europe and Iberia plates. We study the relief of the 230 km-long segment of the linear range between the Cantabria and Galicia re- gions, up to 2,650 m altitude. The bulk trend of the orogeny is controlled by the orientation of alpine thrusts that accommodate the shortening in relation to plate convergence. The Alpine Orogeny produced crustal thickening and the present day topography. Crustal thickness varies from 30 km in Eastern Cantabrian Mountains to 45-55 km at the Middle part of these mountains. The collision between European and African plates localized in northern Iberia from the Eocene to Oligocene and later migrated to southern Iberia during the Miocene. No major tectonic convergence was accommodated in the Cantabrians Mountains since the Oligocene, entering the orogen an erosional phase since then. The GIS-analysis present here, using 5 and 25 m-resolution DEMs by the Spanish National Geographical Institute, aims to identify the major features and to characterize the overall relief of the Cantabrians Mountains. In our preliminary approach, we present swath profiles, major river basins, watershed, longitudinal profiles of major rivers and hypsometric curves from selected areas that cover the studied orogen segment. Major tectonic structures control the location and orientation of the main watershed of the mountain range, but also the orientation of some local watersheds, e.g. associated to the Llanera thrust or the Ventaniella (strike-slip) fault. An unexpected result is that the average altitude along the water divide is 1,500 m, regardless of the large differences in crustal thickness along the study area. Most longitudinal river profiles running south to north lack knick points in relation to relief forming tectonic structures, indicative of the predominance of fluvial erosional system postdating tectonics. An emerged coastal wave-cut platform dipping gently towards the West, a slight increase in maximum mountain altitude to the east and slight increase in river incision also towards the East may indicate that a gradient in erosion and in up-lifting exists increasing from West to East. This is consistent with an overall increase of crustal thickness along this direction.

Mass balance of arsenic fluxes in rivers impacted by gold mining activities in Paracatu (Minas Gerais State, Brazil).

PubMed

Bidone, Edison; Cesar, Ricardo; Santos, Maria Carla; Sierpe, Ricardo; Silva-Filho, Emmanuel Vieira; Kutter, Vinicius; Dias da Silva, Lílian I; Castilhos, Zuleica

2018-03-01

Arsenic (As) is a dangerous and carcinogenic element and drinking water is its main pathway of human exposure. Gold mines are widely recognized as important sources of As pollution. This work proposes the assessment of As distribution along watersheds surrounding "Morro do Ouro" gold mine (Paracatu, southeastern Brazil). A balance approach between filtered As fluxes (As < 0.45 μm) and suspended particulate material (AsSPM) in different river segments was applied. Ultrafiltration procedure was used to categorize As into the following classes: particulate > 0.1 μm, colloidal < 0.1 μm to > 10 kDa, dissolved < 10 kDa to > 1 kDa, and truly dissolved < 1 kDa. By applying this approach, arsenic contributions from mining facilities were quantified in order to identify critical fluvial segments and support decision makers in actions of remediation. The mass balance indicated the occurrence of a decreasing gradient from upstream to downstream: (i) of the As concentrations higher than the limit established by Brazilian law (10 μg L -1 ); (ii) of the ratio between specific fluxes (g As km -2  day -1 ) and those determined using an uncontaminated watershed (a proxy for estimating the anthropic contribution), from 103 to 101; (iii) of the specific fluxes As < 0.45 μm and AsSPM from 102 to 100; and (iv) of the negative balance output minus input for each river segment that suggests As accumulation in sediments along the rivers in both urban and rural areas, mainly due to SPM sedimentation and sorption by Fe oxyhydroxides. Ultrafiltration shattering showed concentrations of decreasing As with particle size; the SPM load (> 0.1 μm) was almost one order higher to dissolved load (< 1 kDa).

Variations in annual water-energy balance and their correlations with vegetation and soil moisture dynamics: A case study in the Wei River Basin, China

DOE Office of Scientific and Technical Information (OSTI.GOV)

Huang, Shengzhi; Huang, Qiang; Leng, Guoyong

It is of importance to investigate watershed water-energy balance variations and to explore their correlations with vegetation and soil moisture dynamics, which helps better understand the interplays between underlying surface dynamics and the terrestrial water cycle. The heuristic segmentation method was adopted to identify change points in the parameter to series in Fu's equation belonging to the Budyko framework in the Wei River Basin (WRB) and its sub-basins aiming to examine the validity of stationary assumptions. Additionally, the cross wavelet analysis was applied to explore the correlations between vegetation and soil moisture dynamics and to variations. Results indicated that (1)more » the omega variations in the WRB are significant, with some change points identified except for the sub-basin above Zhangjiashan, implying that the stationarity of omega series in the WRB is invalid except for the sub-basin above Zhangjiashan; (2) the correlations between soil moisture series and to series are weaker than those between Normalized Difference Vegetation Index (NDVI) series and omega series; (3) vegetation dynamics show significantly negative correlations with omega variations in 1983-2003 with a 4-8 year signal in the whole WRB, and both vegetation and soil moisture dynamics exert strong impacts on the parameter omega changes. This study helps understanding the interactions between underlying land surface dynamics and watershed water-energy balance. (C) 2017 Elsevier B.V. All rights reserved.« less

A Watershed-Scale Survey for Stream-Foraging Birds in Northern California

Treesearch

Sherri L. Miller; C. John Ralph

2005-01-01

Our objective was to develop a survey technique and watershed-scale design to monitor trends of population size and habitat associations in stream-foraging birds. The resulting methods and design will be used to examine the efficacy of quantifying the association of stream and watershed quality with bird abundance. We surveyed 60 randomly selected 2-km stream reaches...

Watershed-scale evaluation of the Water Erosion Prediction Project (WEPP) model in the Lake Tahoe basin

Treesearch

Erin S. Brooks; Mariana Dobre; William J. Elliot; Joan Q. Wu; Jan Boll

2016-01-01

Forest managers need methods to evaluate the impacts of management at the watershed scale. The Water Erosion Prediction Project (WEPP) has the ability to model disturbed forested hillslopes, but has difficulty addressing some of the critical processes that are important at a watershed scale, including baseflow and water yield. In order to apply WEPP to...

Watershed Models for Predicting Nitrogen Loads from Artificially Drained Lands

Treesearch

R. Wayne Skaggs; George M. Chescheir; Glenn Fernandez; Devendra M. Amatya

2003-01-01

Non-point sources of pollutants originate at the field scale but water quality problems usually occur at the watershed or basin scale. This paper describes a series of models developed for poorly drained watersheds. The models use DRAINMOD to predict hydrology at the field scale and a range of methods to predict channel hydraulics and nitrogen transport. In-stream...

Statistical Segmentation of Surgical Instruments in 3D Ultrasound Images

PubMed Central

Linguraru, Marius George; Vasilyev, Nikolay V.; Del Nido, Pedro J.; Howe, Robert D.

2008-01-01

The recent development of real-time 3D ultrasound enables intracardiac beating heart procedures, but the distorted appearance of surgical instruments is a major challenge to surgeons. In addition, tissue and instruments have similar gray levels in US images and the interface between instruments and tissue is poorly defined. We present an algorithm that automatically estimates instrument location in intracardiac procedures. Expert-segmented images are used to initialize the statistical distributions of blood, tissue and instruments. Voxels are labeled through an iterative expectation-maximization algorithm using information from the neighboring voxels through a smoothing kernel. Once the three classes of voxels are separated, additional neighboring information is combined with the known shape characteristics of instruments in order to correct for misclassifications. We analyze the major axis of segmented data through their principal components and refine the results by a watershed transform, which corrects the results at the contact between instrument and tissue. We present results on 3D in-vitro data from a tank trial, and 3D in-vivo data from cardiac interventions on porcine beating hearts, using instruments of four types of materials. The comparison of algorithm results to expert-annotated images shows the correct segmentation and position of the instrument shaft. PMID:17521802

Predictive Understanding of Mountainous Watershed Hydro-Biogeochemical Function and Response to Perturbations

NASA Astrophysics Data System (ADS)

Hubbard, S. S.; Williams, K. H.; Agarwal, D.; Banfield, J. F.; Beller, H. R.; Bouskill, N.; Brodie, E.; Maxwell, R. M.; Nico, P. S.; Steefel, C. I.; Steltzer, H.; Tokunaga, T. K.; Wainwright, H. M.; Dwivedi, D.; Newcomer, M. E.

2017-12-01

Recognizing the societal importance, vulnerability and complexity of mountainous watersheds, the `Watershed Function' project is developing a predictive understanding of how mountainous watersheds retain and release downgradient water, nutrients, carbon, and metals. In particular, the project is exploring how early snowmelt, drought, floods and other disturbances will influence mountainous watershed dynamics at seasonal to decadal timescales. Located in the 300km2 East River headwater catchment of the Upper Colorado River Basin, the project is guided by several constructs. First, the project considers the integrated role of surface and subsurface flow and biogeochemical reactions - from bedrock to the top of the vegetative canopy, from terrestrial through aquatic compartments, and from summit to receiving waters. The project takes a system-of-systems perspective, focused on developing new methods to quantify the cumulative watershed hydrobiogeochemical response to perturbations based on information from select subsystems within the watershed, each having distinct vegetation-subsurface biogeochemical-hydrological characteristics. A `scale-adaptive' modeling capability, in development using adaptive mesh refinement methods, serves as the organizing framework for the SFA. The scale-adaptive approach is intended to permit simulation of system-within-systems behavior - and aggregation of that behavior - from genome through watershed scales. This presentation will describe several early project discoveries and advances made using experimental, observational and numerical approaches. Among others, examples may include:quantiying how seasonal hydrological perturbations drive biogeochemical responses across critical zone compartments, with a focus on N and C transformations; metagenomic documentation of the spatial variability in floodplain meander microbial ecology; 3D reactive transport simulations of couped hydrological-biogeochemical behavior in the hyporheic zone; and new characterization and inversion approaches to quantify co-variability between above and below ground dynamics and the susceptibility of vegetation to drought stress. More information is provided at: Watershed.lbl.gov

Verification of LANDSAT imagery for morphametric and topological studies of drainage basins in a section of the western plateau of Sao Paulo State: Tiete-Aguapei watershed. M.S. Thesis; [Brazil

NASA Technical Reports Server (NTRS)

Parada, N. D. J. (Principal Investigator); Camargo, J. C. G.

1982-01-01

The potential of using LANDSAT MSS imagery for morphometric and topological studies of drainage basins was verified. Using Tiete and Aguapei watershed (Western Plateau) as the test site because of its homogeneous landscape. Morphometric variables collected for ten drainage basins include: circularity index; river density; drainage density; topographic texture; areal and index length; basin parameter; and main river length 1st order and 2nd order channel length. The topographical variables determined were: order; magnitude; bifuraction ratio; weighted bifuraction ratio; number of segments; number of linking; trajectory length; and topological diameter. Data were collected on topographical maps at the scale of 1:250,000 and 1:59,000 and on LANDSAT imagery at the scale of 1:250,000. The results which were summarized on tables for further analysis, show that LANDSAT imagery can supply the lack of topographic charts for drainage studies.

Aquatic Trophic Productivity model: A decision support model for river restoration planning in the Methow River, Washington

USGS Publications Warehouse

Benjamin, Joseph R.; Bellmore, J. Ryan

2016-05-19

In this report, we outline the structure of a stream food-web model constructed to explore how alternative river restoration strategies may affect stream fish populations. We have termed this model the “Aquatic Trophic Productivity model” (ATP). We present the model structure, followed by three case study applications of the model to segments of the Methow River watershed in northern Washington. For two case studies (middle Methow River and lower Twisp River floodplain), we ran a series of simulations to explore how food-web dynamics respond to four distinctly different, but applied, strategies in the Methow River watershed: (1) reconnection of floodplain aquatic habitats, (2) riparian vegetation planting, (3) nutrient augmentation (that is, salmon carcass addition), and (4) enhancement of habitat suitability for fish. For the third case study, we conducted simulations to explore the potential fish and food-web response to habitat improvements conducted in 2012 at the Whitefish Island Side Channel, located in the middle Methow River.

Technical Note: Determination of the SCS initial abstraction ratio in an experimental watershed in Greece

NASA Astrophysics Data System (ADS)

Baltas, E. A.; Dervos, N. A.; Mimikou, M. A.

2007-11-01

The present study was conducted in an experimental watershed in Attica, Greece, using observed rainfall/runoff events. The objective of the study was the determination of the initial abstraction ratio of the watershed. The average ratio (Ia/S) of the entire watershed was equal to 0.014. The corresponding ratio at a subwatershed was 0.037. The difference was attributed to the different spatial distribution of landuses and geological formations at the extent of the watershed. Both of the determined ratios are close to the ratio value of 0.05 that has been suggested from many studies for the improvement of the SCS-CN method.

Californian demonstration and validation of automated agricultural field extraction from multi-temporal Landsat data

NASA Astrophysics Data System (ADS)

Yan, L.; Roy, D. P.

2013-12-01

The spatial distribution of agricultural fields is a fundamental description of rural landscapes and the location and extent of fields is important to establish the area of land utilized for agricultural yield prediction, resource allocation, and for economic planning. To date, field objects have not been extracted from satellite data over large areas because of computational constraints and because consistently processed appropriate resolution data have not been available or affordable. We present a fully automated computational methodology to extract agricultural fields from 30m Web Enabled Landsat data (WELD) time series and results for approximately 250,000 square kilometers (eleven 150 x 150 km WELD tiles) encompassing all the major agricultural areas of California. The extracted fields, including rectangular, circular, and irregularly shaped fields, are evaluated by comparison with manually interpreted Landsat field objects. Validation results are presented in terms of standard confusion matrix accuracy measures and also the degree of field object over-segmentation, under-segmentation, fragmentation and shape distortion. The apparent success of the presented field extraction methodology is due to several factors. First, the use of multi-temporal Landsat data, as opposed to single Landsat acquisitions, that enables crop rotations and inter-annual variability in the state of the vegetation to be accommodated for and provides more opportunities for cloud-free, non-missing and atmospherically uncontaminated surface observations. Second, the adoption of an object based approach, namely the variational region-based geometric active contour method that enables robust segmentation with only a small number of parameters and that requires no training data collection. Third, the use of a watershed algorithm to decompose connected segments belonging to multiple fields into coherent isolated field segments and a geometry based algorithm to detect and associate parts of circular fields together. Fourth, masking of non-agricultural vegetation using a recent WELD 30m percent tree-cover product and a multi-temporal spectral-angle mapping based grass extraction methodology. Implications and recommendations for algorithm refinement and application to decadal conterminous United States WELD data are discussed.

Combining Watershed Variables with PCR-based Methods for Better Characterization and Management of Fecal Pollution in Small Streams

EPA Science Inventory

Ability to distinguish between human and animal fecal pollution is important for risk assessment and watershed management, particularly in bodies of water used as sources of drinking water or for recreation. PCR-based methods were used to determine the source of fecal pollution ...

Geospatial tool-based morphometric analysis using SRTM data in Sarabanga Watershed, Cauvery River, Salem district, Tamil Nadu, India

NASA Astrophysics Data System (ADS)

Arulbalaji, P.; Gurugnanam, B.

2017-11-01

A morphometric analysis of Sarabanga watershed in Salem district has been chosen for the present study. Geospatial tools, such as remote sensing and GIS, are utilized for the extraction of river basin and its drainage networks. The Shuttle Radar Topographic Mission (SRTM-30 m resolution) data have been used for morphometric analysis and evaluating various morphometric parameters. The morphometric parameters of Sarabanga watershed have been analyzed and evaluated by pioneer methods, such as Horton and Strahler. The dendritic type of drainage pattern is draining the Sarabanga watershed, which indicates that lithology and gentle slope category is controlling the study area. The Sarabanga watershed is covered an area of 1208 km2. The slope of the watershed is various from 10 to 40% and which is controlled by lithology of the watershed. The bifurcation ratio ranges from 3 to 4.66 indicating the influence of geological structure and suffered more structural disturbances. The form factor indicates elongated shape of the study area. The total stream length and area of watershed indicate that mean annual rainfall runoff is relatively moderate. The basin relief expressed that watershed has relatively high denudation rates. The drainage density of the watershed is low indicating that infiltration is more dominant. The ruggedness number shows the peak discharges that are likely to be relatively higher. The present study is very useful to plan the watershed management.

CellSegm - a MATLAB toolbox for high-throughput 3D cell segmentation

PubMed Central

2013-01-01

The application of fluorescence microscopy in cell biology often generates a huge amount of imaging data. Automated whole cell segmentation of such data enables the detection and analysis of individual cells, where a manual delineation is often time consuming, or practically not feasible. Furthermore, compared to manual analysis, automation normally has a higher degree of reproducibility. CellSegm, the software presented in this work, is a Matlab based command line software toolbox providing an automated whole cell segmentation of images showing surface stained cells, acquired by fluorescence microscopy. It has options for both fully automated and semi-automated cell segmentation. Major algorithmic steps are: (i) smoothing, (ii) Hessian-based ridge enhancement, (iii) marker-controlled watershed segmentation, and (iv) feature-based classfication of cell candidates. Using a wide selection of image recordings and code snippets, we demonstrate that CellSegm has the ability to detect various types of surface stained cells in 3D. After detection and outlining of individual cells, the cell candidates can be subject to software based analysis, specified and programmed by the end-user, or they can be analyzed by other software tools. A segmentation of tissue samples with appropriate characteristics is also shown to be resolvable in CellSegm. The command-line interface of CellSegm facilitates scripting of the separate tools, all implemented in Matlab, offering a high degree of flexibility and tailored workflows for the end-user. The modularity and scripting capabilities of CellSegm enable automated workflows and quantitative analysis of microscopic data, suited for high-throughput image based screening. PMID:23938087

A Dataset and a Technique for Generalized Nuclear Segmentation for Computational Pathology.

PubMed

Kumar, Neeraj; Verma, Ruchika; Sharma, Sanuj; Bhargava, Surabhi; Vahadane, Abhishek; Sethi, Amit

2017-07-01

Nuclear segmentation in digital microscopic tissue images can enable extraction of high-quality features for nuclear morphometrics and other analysis in computational pathology. Conventional image processing techniques, such as Otsu thresholding and watershed segmentation, do not work effectively on challenging cases, such as chromatin-sparse and crowded nuclei. In contrast, machine learning-based segmentation can generalize across various nuclear appearances. However, training machine learning algorithms requires data sets of images, in which a vast number of nuclei have been annotated. Publicly accessible and annotated data sets, along with widely agreed upon metrics to compare techniques, have catalyzed tremendous innovation and progress on other image classification problems, particularly in object recognition. Inspired by their success, we introduce a large publicly accessible data set of hematoxylin and eosin (H&E)-stained tissue images with more than 21000 painstakingly annotated nuclear boundaries, whose quality was validated by a medical doctor. Because our data set is taken from multiple hospitals and includes a diversity of nuclear appearances from several patients, disease states, and organs, techniques trained on it are likely to generalize well and work right out-of-the-box on other H&E-stained images. We also propose a new metric to evaluate nuclear segmentation results that penalizes object- and pixel-level errors in a unified manner, unlike previous metrics that penalize only one type of error. We also propose a segmentation technique based on deep learning that lays a special emphasis on identifying the nuclear boundaries, including those between the touching or overlapping nuclei, and works well on a diverse set of test images.

CellSegm - a MATLAB toolbox for high-throughput 3D cell segmentation.

PubMed

Hodneland, Erlend; Kögel, Tanja; Frei, Dominik Michael; Gerdes, Hans-Hermann; Lundervold, Arvid

2013-08-09

: The application of fluorescence microscopy in cell biology often generates a huge amount of imaging data. Automated whole cell segmentation of such data enables the detection and analysis of individual cells, where a manual delineation is often time consuming, or practically not feasible. Furthermore, compared to manual analysis, automation normally has a higher degree of reproducibility. CellSegm, the software presented in this work, is a Matlab based command line software toolbox providing an automated whole cell segmentation of images showing surface stained cells, acquired by fluorescence microscopy. It has options for both fully automated and semi-automated cell segmentation. Major algorithmic steps are: (i) smoothing, (ii) Hessian-based ridge enhancement, (iii) marker-controlled watershed segmentation, and (iv) feature-based classfication of cell candidates. Using a wide selection of image recordings and code snippets, we demonstrate that CellSegm has the ability to detect various types of surface stained cells in 3D. After detection and outlining of individual cells, the cell candidates can be subject to software based analysis, specified and programmed by the end-user, or they can be analyzed by other software tools. A segmentation of tissue samples with appropriate characteristics is also shown to be resolvable in CellSegm. The command-line interface of CellSegm facilitates scripting of the separate tools, all implemented in Matlab, offering a high degree of flexibility and tailored workflows for the end-user. The modularity and scripting capabilities of CellSegm enable automated workflows and quantitative analysis of microscopic data, suited for high-throughput image based screening.

Joint estimation of habitat dynamics and species interactions: disturbance reduces co-occurrence of non-native predators with an endangered toad.

PubMed

Miller, David A W; Brehme, Cheryl S; Hines, James E; Nichols, James D; Fisher, Robert N

2012-11-01

1. Ecologists have long been interested in the processes that determine patterns of species occurrence and co-occurrence. Potential short-comings of many existing empirical approaches that address these questions include a reliance on patterns of occurrence at a single time point, failure to account properly for imperfect detection and treating the environment as a static variable. 2. We fit detection and non-detection data collected from repeat visits using a dynamic site occupancy model that simultaneously accounts for the temporal dynamics of a focal prey species, its predators and its habitat. Our objective was to determine how disturbance and species interactions affect the co-occurrence probabilities of an endangered toad and recently introduced non-native predators in stream breeding habitats. For this, we determined statistical support for alternative processes that could affect co-occurrence frequency in the system. 3. We collected occurrence data at stream segments in two watersheds where streams were largely ephemeral and one watershed dominated by perennial streams. Co-occurrence probabilities of toads with non-native predators were related to disturbance frequency, with low co-occurrence in the ephemeral watershed and high co-occurrence in the perennial watershed. This occurred because once predators were established at a site, they were rarely lost from the site except in cases when the site dried out. Once dry sites became suitable again, toads colonized them much more rapidly than predators, creating a period of predator-free space. 4. We attribute the dynamics to a storage effect, where toads persisting outside the stream environment during periods of drought rapidly colonized sites when they become suitable again. Our results support that even in highly connected stream networks, temporal disturbance can structure frequencies with which breeding amphibians encounter non-native predators. 5. Dynamic multi-state occupancy models are a powerful tool for rigorously examining hypotheses about inter-species and species-habitat interactions. In contrast to previous methods that infer dynamic processes based on static patterns in occupancy, the approach we took allows the dynamic processes that determine species-species and species-habitat interactions to be directly estimated. © 2012 The Authors. Journal of Animal Ecology © 2012 British Ecological Society.

Integrated Approach to Inform the New York City Water Supply System Coupling SAR Remote Sensing Observations and the SWAT Watershed Model

NASA Astrophysics Data System (ADS)

Tesser, D.; Hoang, L.; McDonald, K. C.

2017-12-01

Efforts to improve municipal water supply systems increasingly rely on an ability to elucidate variables that drive hydrologic dynamics within large watersheds. However, fundamental model variables such as precipitation, soil moisture, evapotranspiration, and soil freeze/thaw state remain difficult to measure empirically across large, heterogeneous watersheds. Satellite remote sensing presents a method to validate these spatially and temporally dynamic variables as well as better inform the watershed models that monitor the water supply for many of the planet's most populous urban centers. PALSAR 2 L-band, Sentinel 1 C-band, and SMAP L-band scenes covering the Cannonsville branch of the New York City (NYC) water supply watershed were obtained for the period of March 2015 - October 2017. The SAR data provides information on soil moisture, free/thaw state, seasonal surface inundation, and variable source areas within the study site. Integrating the remote sensing products with watershed model outputs and ground survey data improves the representation of related processes in the Soil and Water Assessment Tool (SWAT) utilized to monitor the NYC water supply. PALSAR 2 supports accurate mapping of the extent of variable source areas while Sentinel 1 presents a method to model the timing and magnitude of snowmelt runoff events. SMAP Active Radar soil moisture product directly validates SWAT outputs at the subbasin level. This blended approach verifies the distribution of soil wetness classes within the watershed that delineate Hydrologic Response Units (HRUs) in the modified SWAT-Hillslope. The research expands the ability to model the NYC water supply source beyond a subset of the watershed while also providing high resolution information across a larger spatial scale. The global availability of these remote sensing products provides a method to capture fundamental hydrology variables in regions where current modeling efforts and in situ data remain limited.

Difference of stand-scale transpiration between ridge and riparian area in a watershed with Japanese cypress plantation

NASA Astrophysics Data System (ADS)

Kume, T.; Tsuruta, K.; Komatsu, H.; Shinohara, Y.; Otsuki, K.

2011-12-01

Several different methods to assess water use are available, and the sap flux measurement technique is one of the most promising methods, especially in monotonous watershed. Previously, three spatial levels of scaling have been used to obtain bottom-up transpiration estimates based on the sap flux technique: from within-tree to tree, from tree to stand, and from stand to watershed or landscape. Although there are considerable variations that must be taken into account at each step, few studies have examined plot-to-plot variability of stand-scale transpirations. To design optimum sampling method to accurately estimate transpiration at the watershed-scale, it is indispensable to understand heterogeneity of stand-scale transpiration in a forested watershed and the factors determining the heterogeneity. This study was undertaken to clarify differences of stand-scale transpirations within a watershed and the factors determining the differences. To this aim, we conducted sap flux-based transpiration estimates in two plots such as a lower riparian (RZ) and an upper ridge (UZ) zone in a watershed with Japanese cypress plantation, Kyushu, Japan in two years. Tree height and diameter of breast height (DBH) were lager in RZ than those of UZ. The stand sapwood area (As) was lager in RZ than UZ (21.9 cm2h a-1, 16.8 cm2ha-1, respectively). Stand mean sap flux (Js) in RZ was almost same as that of UZ when relatively lower Js, while, Js in RZ was higher than that of UZ when relatively higher Js (i.e., bright days in summer season). Consequently, daily stand-scale transpiration (E), which is the multiple of As and Js, differed by two times between RZ and UZ in summer season. This study found significant heterogeneity of stand-scale transpiration within the watershed and that the differences could be caused by two aspects such as stand structure and sap flux velocity.

A System Method for the Assessment of Integrated Water Resources Management (IWRM) in Mountain Watershed Areas: The Case of the "Giffre" Watershed (France)

NASA Astrophysics Data System (ADS)

Charnay, Bérengère

2011-07-01

In the last fifty years, many mountain watersheds in temperate countries have known a progressive change from self-standing agro-silvo-pastoral systems to leisure dominated areas characterized by a concentration of tourist accommodations, leading to a drinking water peak during the winter tourist season, when the water level is lowest in rivers and sources. The concentration of water uses increases the pressure on "aquatic habitats" and competition between uses themselves. Consequently, a new concept was developed following the international conferences in Dublin (International Conference on Water and the Environment - ICWE) and Rio de Janeiro (UN Conference on Environment and Development), both in 1992, and was broadly acknowledged through international and European policies. It is the concept of Integrated Water Resource Management ( IWRM). It meets the requirements of different uses of water and aquatic zones whilst preserving the natural functions of such areas and ensuring a satisfactory economic and social development. This paper seeks to evaluate a local water resources management system in order to implement it using IWRM in mountain watersheds. The assessment method is based on the systemic approach to take into account all components influencing a water resources management system at the watershed scale. A geographic information system was built to look into interactions between water resources, land uses, and water uses. This paper deals specifically with a spatial comparison between hydrologically sensitive areas and land uses. The method is applied to a French Alps watershed: the Giffre watershed (a tributary of the Arve in Haute-Savoie). The results emphasize both the needs and the gaps in implementing IWRM in vulnerable mountain regions.

Precipitation and Runoff Simulations of the Carson Range and Pine Nut Mountains, and Updated Estimates of Ground-Water Inflow and the Ground-Water Budgets for Basin-Fill Aquifers of Carson Valley, Douglas County, Nevada, and Alpine County, California

USGS Publications Warehouse

Jeton, Anne E.; Maurer, Douglas K.

2007-01-01

Recent estimates of ground-water inflow to the basin-fill aquifers of Carson Valley, Nevada, and California, from the adjacent Carson Range and Pine Nut Mountains ranged from 22,000 to 40,000 acre-feet per year using water-yield and chloride-balance methods. In this study, watershed models were developed for watersheds with perennial streams and for watersheds with ephemeral streams in the Carson Range and Pine Nut Mountains to provide an independent estimate of ground-water inflow. This report documents the development and calibration of the watershed models, presents model results, compares the results with recent estimates of ground-water inflow to the basin-fill aquifers of Carson Valley, and presents updated estimates of the ground-water budget for basin-fill aquifers of Carson Valley. The model used for the study was the Precipitation-Runoff Modeling System, a physically based, distributed-parameter model designed to simulate precipitation and snowmelt runoff as well as snowpack accumulation and snowmelt processes. Geographic Information System software was used to manage spatial data, characterize model drainages, and to develop Hydrologic Response Units. Models were developed for * Two watersheds with gaged perennial streams in the Carson Range and two watersheds with gaged perennial streams in the Pine Nut Mountains using measured daily mean runoff, * Ten watersheds with ungaged perennial streams using estimated daily mean runoff, * Ten watershed with ungaged ephemeral streams in the Carson Range, and * A large area of ephemeral runoff near the Pine Nut Mountains. Models developed for the gaged watersheds were used as index models to guide the calibration of models for ungaged watersheds. Model calibration was constrained by daily mean runoff for 4 gaged watersheds and for 10 ungaged watersheds in the Carson Range estimated in a previous study. The models were further constrained by annual precipitation volumes estimated in a previous study to provide estimates of ground-water inflow using similar water input. The calibration periods were water years 1990-2002 for watersheds in the Carson Range, and water years 1981-97 for watersheds in the Pine Nut Mountains. Daily mean values for water years 1990-2002 were then simulated using the calibrated watershed models in the Pine Nut Mountains. The daily mean values of precipitation, runoff, evapotranspiration, and ground-water inflow simulated from the watershed models were summed to provide annual mean rates and volumes for each year of the simulations, and mean annual rates and volumes computed for water years 1990-2002. Mean annual bias for the period of record for models of Daggett Creek and Fredericksburg Canyon watersheds, two gaged perennial watersheds in the Carson Range, was within 4 percent and relative errors were about 6 and 12 percent, respectively. Model fit was not as satisfactory for two gaged perennial watersheds, Pine Nut and Buckeye Creeks, in the Pine Nut Mountains. The Pine Nut Creek watershed model had a large negative mean annual bias and a relative error of -11 percent, underestimated runoff for all years but the wet years in the latter part of the record, but adequately simulated the bulk of the spring runoff most of the years. The Buckeye Creek watershed model overestimated mean annual runoff with a relative error of about -5 percent when water year 1994 was removed from the analysis because it had a poor record. The bias and error of the calibrated models were within generally accepted limits for watershed models, indicating the simulated rates and volumes of runoff and ground-water inflow were reasonable. The total mean annual ground-water inflow to Carson Valley computed using estimates simulated by the watershed models was 38,000 acre-feet, including ground-water inflow from Eagle Valley, recharge from precipitation on eolian sand and gravel deposits, and ground-water recharge from precipitation on the western alluvial fans. The estimate was in close agreement with that obtained from the chloride-balance method, 40,000 acre-feet, but was considerably greater than the estimate obtained from the water-yield method, 22,000 acre-feet. The similar estimates obtained from the watershed models and chloride-balance method, two relatively independent methods, provide more confidence that they represent a reasonably accurate volume of ground-water inflow to Carson Valley. However, the two estimates are not completely independent because they use similar distributions of mean annual precipitation. Annual ground-water recharge of the basin-fill aquifers in Carson Valley ranged from 51,000 to 54,000 acre-feet computed using estimates of ground-water inflow to Carson Valley simulated from the watershed models combined with previous estimates of other ground-water budget components. Estimates of mean annual ground-water discharge range from 44,000 to 47,000 acre-feet. The low range estimate for ground-water recharge, 51,000 acre-feet per year, is most similar to the high range estimate for ground-water discharge, 47,000 acre-feet per year. Thus, an average annual volume of about 50,000 acre-feet is a reasonable estimate for mean annual ground-water recharge to and discharge from the basin-fill aquifers in Carson Valley. The results of watershed models indicate that significant interannual variability in the volumes of ground-water inflow is caused by climate variations. During multi-year drought conditions, the watershed simulations indicate that ground-water recharge could be as much as 80 percent less than the mean annual volume of 50,000 acre-feet.

Investigating the Effects of Motion Streaks on pQCT-Derived Leg Muscle Density and Its Association With Fractures.

PubMed

Chan, Adrian C H; Adachi, Jonathan D; Papaioannou, Alexandra; Wong, Andy Kin On

Lower peripheral quantitative computed tomography (pQCT)-derived leg muscle density has been associated with fragility fractures in postmenopausal women. Limb movement during image acquisition may result in motion streaks in muscle that could dilute this relationship. This cross-sectional study examined a subset of women from the Canadian Multicentre Osteoporosis Study. pQCT leg scans were qualitatively graded (1-5) for motion severity. Muscle and motion streak were segmented using semi-automated (watershed) and fully automated (threshold-based) methods, computing area, and density. Binary logistic regression evaluated odds ratios (ORs) for fragility or all-cause fractures related to each of these measures with covariate adjustment. Among the 223 women examined (mean age: 72.7 ± 7.1 years, body mass index: 26.30 ± 4.97 kg/m 2 ), muscle density was significantly lower after removing motion (p < 0.001) for both methods. Motion streak areas segmented using the semi-automated method correlated better with visual motion grades (rho = 0.90, p < 0.01) compared to the fully automated method (rho = 0.65, p < 0.01). Although the analysis-reanalysis precision of motion streak area segmentation using the semi-automated method is above 5% error (6.44%), motion-corrected muscle density measures remained well within 2% analytical error. The effect of motion-correction on strengthening the association between muscle density and fragility fractures was significant when motion grade was ≥3 (p interaction <0.05). This observation was most dramatic for the semi-automated algorithm (OR: 1.62 [0.82,3.17] before to 2.19 [1.05,4.59] after correction). Although muscle density showed an overall association with all-cause fractures (OR: 1.49 [1.05,2.12]), the effect of motion-correction was again, most impactful within individuals with scans showing grade 3 or above motion. Correcting for motion in pQCT leg scans strengthened the relationship between muscle density and fragility fractures, particularly in scans with motion grades of 3 or above. Motion streaks are not confounders to the relationship between pQCT-derived leg muscle density and fractures, but may introduce heterogeneity in muscle density measurements, rendering associations with fractures to be weaker. Copyright © 2016. Published by Elsevier Inc.

Rainfall prediction of Cimanuk watershed regions with canonical correlation analysis (CCA)

NASA Astrophysics Data System (ADS)

Rustiana, Shailla; Nurani Ruchjana, Budi; Setiawan Abdullah, Atje; Hermawan, Eddy; Berliana Sipayung, Sinta; Gede Nyoman Mindra Jaya, I.; Krismianto

2017-10-01

Rainfall prediction in Indonesia is very influential on various development sectors, such as agriculture, fisheries, water resources, industry, and other sectors. The inaccurate predictions can lead to negative effects. Cimanuk watershed is one of the main pillar of water resources in West Java. This watersheds divided into three parts, which is a headwater of Cimanuk sub-watershed, Middle of Cimanuk sub-watershed and downstream of Cimanuk sub- watershed. The flow of this watershed will flow through the Jatigede reservoir and will supply water to the north-coast area in the next few years. So, the reliable model of rainfall prediction is very needed in this watershed. Rainfall prediction conducted with Canonical Correlation Analysis (CCA) method using Climate Predictability Tool (CPT) software. The prediction is every 3months on 2016 (after January) based on Climate Hazards group Infrared Precipitation with Stations (CHIRPS) data over West Java. Predictors used in CPT were the monthly data index of Nino3.4, Dipole Mode (DMI), and Monsoon Index (AUSMI-ISMI-WNPMI-WYMI) with initial condition January. The initial condition is chosen by the last data update. While, the predictant were monthly rainfall data CHIRPS region of West Java. The results of prediction rainfall showed by skill map from Pearson Correlation. High correlation of skill map are on MAM (Mar-Apr-May), AMJ (Apr-May-Jun), and JJA (Jun-Jul-Aug) which means the model is reliable to forecast rainfall distribution over Cimanuk watersheds region (over West Java) on those seasons. CCA score over those season prediction mostly over 0.7. The accuracy of the model CPT also indicated by the Relative Operating Characteristic (ROC) curve of the results of Pearson correlation 3 representative point of sub-watershed (Sumedang, Majalengka, and Cirebon), were mostly located in the top line of non-skill, and evidenced by the same of rainfall patterns between observation and forecast. So, the model of CPT with CCA method is reliable to use.

A Learning-Based Wrapper Method to Correct Systematic Errors in Automatic Image Segmentation: Consistently Improved Performance in Hippocampus, Cortex and Brain Segmentation

PubMed Central

Wang, Hongzhi; Das, Sandhitsu R.; Suh, Jung Wook; Altinay, Murat; Pluta, John; Craige, Caryne; Avants, Brian; Yushkevich, Paul A.

2011-01-01

We propose a simple but generally applicable approach to improving the accuracy of automatic image segmentation algorithms relative to manual segmentations. The approach is based on the hypothesis that a large fraction of the errors produced by automatic segmentation are systematic, i.e., occur consistently from subject to subject, and serves as a wrapper method around a given host segmentation method. The wrapper method attempts to learn the intensity, spatial and contextual patterns associated with systematic segmentation errors produced by the host method on training data for which manual segmentations are available. The method then attempts to correct such errors in segmentations produced by the host method on new images. One practical use of the proposed wrapper method is to adapt existing segmentation tools, without explicit modification, to imaging data and segmentation protocols that are different from those on which the tools were trained and tuned. An open-source implementation of the proposed wrapper method is provided, and can be applied to a wide range of image segmentation problems. The wrapper method is evaluated with four host brain MRI segmentation methods: hippocampus segmentation using FreeSurfer (Fischl et al., 2002); hippocampus segmentation using multi-atlas label fusion (Artaechevarria et al., 2009); brain extraction using BET (Smith, 2002); and brain tissue segmentation using FAST (Zhang et al., 2001). The wrapper method generates 72%, 14%, 29% and 21% fewer erroneously segmented voxels than the respective host segmentation methods. In the hippocampus segmentation experiment with multi-atlas label fusion as the host method, the average Dice overlap between reference segmentations and segmentations produced by the wrapper method is 0.908 for normal controls and 0.893 for patients with mild cognitive impairment. Average Dice overlaps of 0.964, 0.905 and 0.951 are obtained for brain extraction, white matter segmentation and gray matter segmentation, respectively. PMID:21237273

[Regulation framework of watershed landscape pattern for non-point source pollution control based on 'source-sink' theory: A case study in the watershed of Maluan Bay, Xiamen City, China].

PubMed

Huang, Ning; Wang, Hong Ying; Lin, Tao; Liu, Qi Ming; Huang, Yun Feng; Li, Jian Xiong

2016-10-01

Watershed landscape pattern regulation and optimization based on 'source-sink' theory for non-point source pollution control is a cost-effective measure and still in the exploratory stage. Taking whole watershed as the research object, on the basis of landscape ecology, related theories and existing research results, a regulation framework of watershed landscape pattern for non-point source pollution control was developed at two levels based on 'source-sink' theory in this study: 1) at watershed level: reasonable basic combination and spatial pattern of 'source-sink' landscape was analyzed, and then holistic regulation and optimization method of landscape pattern was constructed; 2) at landscape patch level: key 'source' landscape was taken as the focus of regulation and optimization. Firstly, four identification criteria of key 'source' landscape including landscape pollutant loading per unit area, landscape slope, long and narrow transfer 'source' landscape, pollutant loading per unit length of 'source' landscape along the riverbank were developed. Secondly, nine types of regulation and optimization methods for different key 'source' landscape in rural and urban areas were established, according to three regulation and optimization rules including 'sink' landscape inlay, banding 'sink' landscape supplement, pollutants capacity of original 'sink' landscape enhancement. Finally, the regulation framework was applied for the watershed of Maluan Bay in Xiamen City. Holistic regulation and optimization mode of watershed landscape pattern of Maluan Bay and key 'source' landscape regulation and optimization measures for the three zones were made, based on GIS technology, remote sensing images and DEM model.

Geolocation of man-made reservoirs across terrains of varying complexity using GIS

NASA Astrophysics Data System (ADS)

Mixon, David M.; Kinner, David A.; Stallard, Robert F.; Syvitski, James P. M.

2008-10-01

The Reservoir Sedimentation Survey Information System (RESIS) is one of the world's most comprehensive databases of reservoir sedimentation rates, comprising nearly 6000 surveys for 1819 reservoirs across the continental United States. Sediment surveys in the database date from 1904 to 1999, though more than 95% of surveys were entered prior to 1980, making RESIS largely a historical database. The use of this database for large-scale studies has been limited by the lack of precise coordinates for the reservoirs. Many of the reservoirs are relatively small structures and do not appear on current USGS topographic maps. Others have been renamed or have only approximate (i.e. township and range) coordinates. This paper presents a method scripted in ESRI's ARC Macro Language (AML) to locate the reservoirs on digital elevation models using information available in RESIS. The script also delineates the contributing watersheds and compiles several hydrologically important parameters for each reservoir. Evaluation of the method indicates that, for watersheds larger than 5 km 2, the correct outlet is identified over 80% of the time. The importance of identifying the watershed outlet correctly depends on the application. Our intent is to collect spatial data for watersheds across the continental United States and describe the land use, soils, and topography for each reservoir's watershed. Because of local landscape similarity in these properties, we show that choosing the incorrect watershed does not necessarily mean that the watershed characteristics will be misrepresented. We present a measure termed terrain complexity and examine its relationship to geolocation success rate and its influence on the similarity of nearby watersheds.

[Evaluation on the eco-economic benefits of small watershed in Beijing mountainous area: a case of Yanqi River watershed].

PubMed

Xiao, Hui-Jie; Wei, Zi-Gang; Wang, Qing; Zhu, Xiao-Bo

2012-12-01

Based on the theory of harmonious development of ecological economy, a total of 13 evaluation indices were selected from the ecological, economic, and social sub-systems of Yanqi River watershed in Huairou District of Beijing. The selected evaluation indices were normalized by using trapezoid functions, and the weights of the evaluation indices were determined by analytic hierarchy process. Then, the eco-economic benefits of the watershed were evaluated with weighted composite index method. From 2004 to 2011, the ecological, economic, and social benefits of Yanqi River watershed all had somewhat increase, among which, ecological benefit increased most, with the value changed from 0.210 in 2004 to 0.255 in 2011 and an increment of 21.5%. The eco-economic benefits of the watershed increased from 0.734 in 2004 to 0.840 in 2011, with an increment of 14.2%. At present, the watershed reached the stage of advanced ecosystem, being in beneficial circulation and harmonious development of ecology, economy, and society.

Reconstructing the microstructure of polyimide-silicalite mixed-matrix membranes and their particle connectivity using FIB-SEM tomography.

PubMed

Diblíková, P; Veselý, M; Sysel, P; Čapek, P

2018-03-01

Properties of a composite material made of a continuous matrix and particles often depend on microscopic details, such as contacts between particles. Focusing on processing raw focused-ion beam scanning electron microscope (FIB-SEM) tomography data, we reconstructed three mixed-matrix membrane samples made of 6FDA-ODA polyimide and silicalite-1 particles. In the first step of image processing, backscattered electron (BSE) and secondary electron (SE) signals were mixed in a ratio that was expected to obtain a segmented 3D image with a realistic volume fraction of silicalite-1. Second, after spatial alignment of the stacked FIB-SEM data, the 3D image was smoothed using adaptive median and anisotropic nonlinear diffusion filters. Third, the image was segmented using the power watershed method coupled with a seeding algorithm based on geodesic reconstruction from the markers. If the resulting volume fraction did not match the target value quantified by chemical analysis of the sample, the BSE and SE signals were mixed in another ratio and the procedure was repeated until the target volume fraction was achieved. Otherwise, the segmented 3D image (replica) was accepted and its microstructure was thoroughly characterized with special attention paid to connectivity of the silicalite phase. In terms of the phase connectivity, Monte Carlo simulations based on the pure-phase permeability values enabled us to calculate the effective permeability tensor, the main diagonal elements of which were compared with the experimental permeability. In line with the hypothesis proposed in our recent paper (Čapek, P. et al. (2014) Comput. Mater. Sci. 89, 142-156), the results confirmed that the existence of particle clusters was a key microstructural feature determining effective permeability. © 2017 The Authors Journal of Microscopy © 2017 Royal Microscopical Society.

Detection and Prevalence of Verotoxin-Producing Escherichia coli O157 and Non-O157 Serotypes in a Canadian Watershed

PubMed Central

Johnson, R. P.; Holtslander, B.; Mazzocco, A.; Roche, S.; Thomas, J. L.; Pollari, F.

2014-01-01

Verotoxin-producing Escherichia coli (VTEC) strains are the cause of food-borne and waterborne illnesses around the world. Traditionally, surveillance of the human population as well as the environment has focused on the detection of E. coli O157:H7. Recently, increasing recognition of non-O157 VTEC strains as human pathogens and the German O104:H4 food-borne outbreak have illustrated the importance of considering the broader group of VTEC organisms from a public health perspective. This study presents the results of a comparison of three methods for the detection of VTEC in surface water, highlighting the efficacy of a direct VT immunoblotting method without broth enrichment for detection and isolation of O157 and non-O157 VTEC strains. The direct immunoblot method eliminates the need for an enrichment step or the use of immunomagnetic separation. This method was developed after 4 years of detecting low frequencies (1%) of E. coli O157:H7 in surface water in a Canadian watershed, situated within one of the FoodNet Canada integrated surveillance sites. By the direct immunoblot method, VTEC prevalence estimates ranged from 11 to 35% for this watershed, and E. coli O157:H7 prevalence increased to 4% (due to improved method sensitivity). This direct testing method provides an efficient means to enhance our understanding of the prevalence and types of VTEC in the environment. This study employed a rapid evidence assessment (REA) approach to frame the watershed findings with watershed E. coli O157:H7 prevalences reported in the literature since 1990 and the knowledge gap with respect to VTEC detection in surface waters. PMID:24487525

Advances in variable selection methods I: Causal selection methods versus stepwise regression and principal component analysis on data of known and unknown functional relationships

EPA Science Inventory

Hydrological predictions at a watershed scale are commonly based on extrapolation and upscaling of hydrological behavior at plot and hillslope scales. Yet, dominant hydrological drivers at a hillslope may not be as dominant at the watershed scale because of the heterogeneity of w...

Sampling considerations for establishment of baseline loadings from forested watersheds for TMDL application

Treesearch

Pamela J. Edwards; Karl W.J. Williard; James N. Kochenderfer

2004-01-01

Five methods for estimating maximum daily and annual nitrate (NO3) and suspended sediment loads using periodic sampling of varying intensities were compared to actual loads calculated from intensive stormflow and baseflow sampling from small, forested watersheds in north central West Virginia to determine if the less intensive sampling methods were accurate and could...

Nutrient Characterization of Rainwater, Soil and Groundwater from Two Different Watersheds, Lake Taihu, China

NASA Astrophysics Data System (ADS)

Thaw, M.; Gao, F.; Yu, Z.; Acharya, K.

2012-12-01

Over the past two decades, an increase of nutrients to Lake Taihu, China has resulted in hyper-eutrophication and the production of severe cyanobacterial blooms. While many past studies have focused on how surface water transports nutrients to the lake, this study seeks to characterize the concentration of nutrients in different media, including rainwater, soil and groundwater from two different watersheds. These two watersheds varied in overall land use, and agricultural sites within each watershed varied by crop type and growing method. Samples were collected from the Meilin watershed, a mix of forest and agricultural land and the Zhangjiagang watershed, which consisted of industrial, urban and agricultural lands. Samples included soils, groundwater and rain water. Soils from each site were characterized by aggregate size class and analyzed for total nitrogen and total phosphorus. Rainwater and groundwater samples were analyzed for total nitrogen and total phosphorus.

Radionuclides deposition and fine sediment transport in a forested watershed, central Japan

NASA Astrophysics Data System (ADS)

Nam, S.; Gomi, T.; Kato, H.; Tesfaye, T.; Onda, Y.

2011-12-01

We investigated radionuclides deposition and fine sediment transport in a 13 ha headwater watershed, Tochigi prefecture, located in 98.94 km north of Tokyo. The study site was within Karasawa experimental forest, Tokyo University of Agriculture and Technology. We conducted fingerprinting approach, based on the activities of fallout radionuclides, including caesium-134 (Cs-134) caesium-137 (Cs-137) and excess lead-210 (Pb-210ex). For indentifying specific sources of fine sediment, we sampled tree, soil on forested floor, soil on logging road surface, stream bed and stream banks. We investigated the radionuclides (i.e., as Cs-134, Cs-137 and Pb-210ex) deposition on tree after accident of nuclear power plants on March 11, 2011. We sampled fruits, leaves, branches, stems, barks on Japanese cedar (Sugi) and Japanese cypress (Hinoki). To analyze the samples, gammaray spectrometry was performed at a laboratory at the University of Tsukuba (Tsukuba City, Japan) using n-type coaxial low-energy HPGe gamma detectors (EGC-200-R and EGC25-195-R of EURYSIS Co., Lingolsheim, France) coupled with a multichannel analyzer. We also collected soil samples under the forest canopy in various soil depths from 2, 5, 10, 20, 30 cm along transect of hillslopes. Samples at forest road were collected road segments crossing on the middle section of monitoring watersheds. Fine sediment transport in the streams were collected at the outlet of 13 ha watersheds using integrated suspended sediment samplers. This study indicates the some portion of radio nuclide potentially remained on the tree surface. Part of the deposited radionuclides attached to soil particles and transported to the streams. Most of the fine sediment can be transported on road surface and/or near stream side (riparian zones).

Remobilization Rates and Cumulative Contributions of Floodplains and Legacy Sediments from Piedmont Tributaries

NASA Astrophysics Data System (ADS)

Miller, A. J.; Donovan, M.; Baker, M. E.; Gellis, A.

2014-12-01

The disparity between watershed erosion rates and downstream sediment delivery has been an important theme in geomorphology for many decades, with the role of floodplains in sediment storage as a frequent focus. In the Piedmont province of the eastern US, post-settlement upland deforestation and agricultural land use led to accumulation of thick packages of overbank sediment ("legacy deposits") in valley bottoms. Previous authors have argued that legacy sediment is a potentially important source of sediment being remobilized by lateral migration of channels. We seek to address 1) How rapidly sediment is remobilized from floodplains by channel migration and bank erosion, 2) the proportion of streambank sediment derived from legacy sediment, and 3) the potential contributions of net stream bank erosion and legacy sediments to downstream sediment yields within the Piedmont of Baltimore County, Maryland. We measured gross erosion and deposition rates over 45 years within the fluvial corridor along 30 valley segments from 18 watersheds with drainage areas between 0.18 and 155 km2 by comparing channel and floodplain morphology from LiDAR-based digital elevation data collected in 2005 with channel positions recorded on 1:2400-scale topographic maps from 1959-1961. Measured deposition within channel and point bars accounted for an average of 46% (28-75%) of gross erosion, with deposition increasingly important in larger drainages. Legacy sediments accounted for 6-90% of bank erosion at individual study segments, represented about 60% of bank height at most exposures, and accounted for 57% of the measured gross erosion. Extrapolating the results indicated that first- and second-order streams account for 62% of total stream bank erosion from northern Baltimore County. After accounting for estimated redeposition, extrapolated net stream bank sediment yields (72 Mg/km2/yr) are equivalent to 70% of average Piedmont watershed yield (104 Mg/km2/yr) cited in studies by previous authors. The results suggest stream bank sediments are a large source of sediment from Piedmont tributaries to the Chesapeake Bay. It is important to note that upland erosion rates have been reported with equivalent and greater magnitude for forested and cropland areas within the Maryland Piedmont (Gellis et al. 2009; Smith et al. 2011).

Watershed Management and Public Health: An Exploration of the Intersection of Two Fields as Reported in the Literature from 2000 to 2010

NASA Astrophysics Data System (ADS)

Bunch, Martin J.; Parkes, Margot; Zubrycki, Karla; Venema, Henry; Hallstrom, Lars; Neudorffer, Cynthia; Berbés-Blázquez, Marta; Morrison, Karen

2014-08-01

Watersheds are settings for health and well-being that have a great deal to offer the public health community due to the correspondence between the spatial form of the watershed unit and the importance to health and well-being of water. However, managing watersheds for human health and well-being requires the ability to move beyond typical reductionist approaches toward more holistic methods. Health and well-being are emergent properties of inter-related social and biophysical processes. This paper characterizes points of connection and integration between watershed management and public health and tests a new conceptual model, the Watershed Governance Prism, to determine the prevalence in peer-reviewed literature of different perspectives relating to watersheds and public health. We conducted an initial search of academic databases for papers that addressed the interface between watershed management (or governance) and public health themes. We then generated a sample of these papers and undertook a collaborative analysis informed by the Watershed Governance Prism. Our analysis found that although these manuscripts dealt with a range of biophysical and social determinants of health, there was a tendency for social factors and health outcomes to be framed as context only for these studies, rather than form the core of the relationships being investigated. At least one cluster of papers emerged from this analysis that represented a cohesive perspective on watershed governance and health; "Perspective B" on the Watershed Governance Prism, "water governance for ecosystems and well-being," was dominant. Overall, the integration of watershed management/governance and public health is in its infancy.

Watershed management and public health: an exploration of the intersection of two fields as reported in the literature from 2000 to 2010.

PubMed

Bunch, Martin J; Parkes, Margot; Zubrycki, Karla; Venema, Henry; Hallstrom, Lars; Neudorffer, Cynthia; Berbés-Blázquez, Marta; Morrison, Karen

2014-08-01

Watersheds are settings for health and well-being that have a great deal to offer the public health community due to the correspondence between the spatial form of the watershed unit and the importance to health and well-being of water. However, managing watersheds for human health and well-being requires the ability to move beyond typical reductionist approaches toward more holistic methods. Health and well-being are emergent properties of inter-related social and biophysical processes. This paper characterizes points of connection and integration between watershed management and public health and tests a new conceptual model, the Watershed Governance Prism, to determine the prevalence in peer-reviewed literature of different perspectives relating to watersheds and public health. We conducted an initial search of academic databases for papers that addressed the interface between watershed management (or governance) and public health themes. We then generated a sample of these papers and undertook a collaborative analysis informed by the Watershed Governance Prism. Our analysis found that although these manuscripts dealt with a range of biophysical and social determinants of health, there was a tendency for social factors and health outcomes to be framed as context only for these studies, rather than form the core of the relationships being investigated. At least one cluster of papers emerged from this analysis that represented a cohesive perspective on watershed governance and health; "Perspective B" on the Watershed Governance Prism, "water governance for ecosystems and well-being," was dominant. Overall, the integration of watershed management/governance and public health is in its infancy.

Assessment of water quality and identification of polluted risky regions based on field observations & GIS in the Honghe River watershed, China.

PubMed

Yan, Chang-An; Zhang, Wanchang; Zhang, Zhijie; Liu, Yuanmin; Deng, Cai; Nie, Ning

2015-01-01

Water quality assessment at the watershed scale requires not only an investigation of water pollution and the recognition of main pollution factors, but also the identification of polluted risky regions resulted in polluted surrounding river sections. To realize this objective, we collected water samplings from 67 sampling sites in the Honghe River watershed of China with Grid GIS method to analyze six parameters including dissolved oxygen (DO), ammonia nitrogen (NH3-N), nitrate nitrogen (NO3-N), nitrite nitrogen (NO2-N), total nitrogen (TN) and total phosphorus (TP). Single factor pollution index and comprehensive pollution index were adopted to explore main water pollutants and evaluate water quality pollution level. Based on two evaluate methods, Geo-statistical analysis and Geographical Information System (GIS) were used to visualize the spatial pollution characteristics and identifying potential polluted risky regions. The results indicated that the general water quality in the watershed has been exposed to various pollutants, in which TP, NO2-N and TN were the main pollutants and seriously exceeded the standard of Category III. The zones of TP, TN, DO, NO2-N and NH3-N pollution covered 99.07%, 62.22%, 59.72%, 37.34% and 13.82% of the watershed respectively, and they were from medium to serious polluted. 83.27% of the watershed in total was polluted by comprehensive pollutants. These conclusions may provide useful and effective information for watershed water pollution control and management.

Predicting runoff induced mass loads in urban watersheds: Linking land use and pyrethroid contamination.

PubMed

Chinen, Kazue; Lau, Sim-Lin; Nonezyan, Michael; McElroy, Elizabeth; Wolfe, Becky; Suffet, Irwin H; Stenstrom, Michael K

2016-10-01

Pyrethroid pesticide mass loadings in the Ballona Creek Watershed were calculated using the volume-concentration method with a Geographic Information Systems (GIS) to explore potential relationships between urban land use, impervious surfaces, and pyrethroid runoff flowing into an urban stream. A calibration of the GIS volume-concentration model was performed using 2013 and 2014 wet-weather sampling data. Permethrin and lambda-cyhalothrin were detected as the highest concentrations; deltamethrin, lambda-cyhalothrin, permethrin and cyfluthrin were the most frequently detected synthetic pyrethroids. Eight neighborhoods within the watershed were highlighted as target areas based on a Weighted Overlay Analysis (WOA) in GIS. Water phase concentration of synthetic pyrethroids (SPs) were calculated from the reported usage. The need for stricter BMP and consumer product controls was identified as a possible way of reducing the detections of pyrethroids in Ballona Creek. This model has significant implications for determining mass loadings due to land use influence, and offers a flexible method to extrapolate data for a limited amount of samplings for a larger watershed, particularly for chemicals that are not subject to environmental monitoring. Offered as a simple approach to watershed management, the GIS-volume concentration model has the potential to be applied to other target pesticides and is useful for simulating different watershed scenarios. Further research is needed to compare results against other similar urban watersheds situated in mediterranean climates. Copyright © 2016 Elsevier Ltd. All rights reserved.

Assessment of Water Quality and Identification of Polluted Risky Regions Based on Field Observations & GIS in the Honghe River Watershed, China

PubMed Central

Yan, Chang-An; Zhang, Wanchang; Zhang, Zhijie; Liu, Yuanmin; Deng, Cai; Nie, Ning

2015-01-01

Water quality assessment at the watershed scale requires not only an investigation of water pollution and the recognition of main pollution factors, but also the identification of polluted risky regions resulted in polluted surrounding river sections. To realize this objective, we collected water samplings from 67 sampling sites in the Honghe River watershed of China with Grid GIS method to analyze six parameters including dissolved oxygen (DO), ammonia nitrogen (NH3-N), nitrate nitrogen (NO3-N), nitrite nitrogen (NO2-N), total nitrogen (TN) and total phosphorus (TP). Single factor pollution index and comprehensive pollution index were adopted to explore main water pollutants and evaluate water quality pollution level. Based on two evaluate methods, Geo-statistical analysis and Geographical Information System (GIS) were used to visualize the spatial pollution characteristics and identifying potential polluted risky regions. The results indicated that the general water quality in the watershed has been exposed to various pollutants, in which TP, NO2-N and TN were the main pollutants and seriously exceeded the standard of Category III. The zones of TP, TN, DO, NO2-N and NH3-N pollution covered 99.07%, 62.22%, 59.72%, 37.34% and 13.82% of the watershed respectively, and they were from medium to serious polluted. 83.27% of the watershed in total was polluted by comprehensive pollutants. These conclusions may provide useful and effective information for watershed water pollution control and management. PMID:25768942

Quantitative analysis and implications of drainage morphometry of the Agula watershed in the semi-arid northern Ethiopia

NASA Astrophysics Data System (ADS)

Fenta, Ayele Almaw; Yasuda, Hiroshi; Shimizu, Katsuyuki; Haregeweyn, Nigussie; Woldearegay, Kifle

2017-11-01

This study aimed at quantitative analysis of morphometric parameters of Agula watershed and its sub-watersheds using remote sensing data, geographic information system, and statistical methods. Morphometric parameters were evaluated from four perspectives: drainage network, watershed geometry, drainage texture, and relief characteristics. A sixth-order river drains Agula watershed and the drainage network is mainly dendritic type. The mean bifurcation ratio ( R b) was 4.46 and at sub-watershed scale, high R b values ( R b > 5) were observed which might be expected in regions of steeply sloping terrain. The longest flow path of Agula watershed is 48.5 km, with knickpoints along the main river which could be attributed to change of lithology and major faults which are common along the rift escarpments. The watershed has elongated shape suggesting low peak flows for longer duration and hence easier flood management. The drainage texture analysis revealed fine drainage which implies the dominance of impermeable soft rock with low resistance against erosion. High relief and steep slopes dominates, by which rough landforms (hills, breaks, and low mountains) make up 76% of the watershed. The S-shaped hypsometric curve with hypsometric integral of 0.4 suggests that Agula watershed is in equilibrium or mature stage of geomorphic evolution. At sub-watershed scale, the derived morphometric parameters were grouped into three clusters (low, moderate, and high) and considerable spatial variability was observed. The results of this study provide information on drainage morphometry that can help better understand the watershed characteristics and serve as a basis for improved planning, management, and decision making to ensure sustainable use of watershed resources.

Identifying and Classifying Pollution Hotspots to Guide Watershed Management in a Large Multiuse Watershed.

PubMed

Su, Fangli; Kaplan, David; Li, Lifeng; Li, Haifu; Song, Fei; Liu, Haisheng

2017-03-03

In many locations around the globe, large reservoir sustainability is threatened by land use change and direct pollution loading from the upstream watershed. However, the size and complexity of upstream basins makes the planning and implementation of watershed-scale pollution management a challenge. In this study, we established an evaluation system based on 17 factors, representing the potential point and non-point source pollutants and the environmental carrying capacity which are likely to affect the water quality in the Dahuofang Reservoir and watershed in northeastern China. We used entropy methods to rank 118 subwatersheds by their potential pollution threat and clustered subwatersheds according to the potential pollution type. Combining ranking and clustering analyses allowed us to suggest specific areas for prioritized watershed management (in particular, two subwatersheds with the greatest pollution potential) and to recommend the conservation of current practices in other less vulnerable locations (91 small watersheds with low pollution potential). Finally, we identified the factors most likely to influence the water quality of each of the 118 subwatersheds and suggested adaptive control measures for each location. These results provide a scientific basis for improving the watershed management and sustainability of the Dahuofang reservoir and a framework for identifying threats and prioritizing the management of watersheds of large reservoirs around the world.

Identifying and Classifying Pollution Hotspots to Guide Watershed Management in a Large Multiuse Watershed

PubMed Central

Su, Fangli; Kaplan, David; Li, Lifeng; Li, Haifu; Song, Fei; Liu, Haisheng

2017-01-01

In many locations around the globe, large reservoir sustainability is threatened by land use change and direct pollution loading from the upstream watershed. However, the size and complexity of upstream basins makes the planning and implementation of watershed-scale pollution management a challenge. In this study, we established an evaluation system based on 17 factors, representing the potential point and non-point source pollutants and the environmental carrying capacity which are likely to affect the water quality in the Dahuofang Reservoir and watershed in northeastern China. We used entropy methods to rank 118 subwatersheds by their potential pollution threat and clustered subwatersheds according to the potential pollution type. Combining ranking and clustering analyses allowed us to suggest specific areas for prioritized watershed management (in particular, two subwatersheds with the greatest pollution potential) and to recommend the conservation of current practices in other less vulnerable locations (91 small watersheds with low pollution potential). Finally, we identified the factors most likely to influence the water quality of each of the 118 subwatersheds and suggested adaptive control measures for each location. These results provide a scientific basis for improving the watershed management and sustainability of the Dahuofang reservoir and a framework for identifying threats and prioritizing the management of watersheds of large reservoirs around the world. PMID:28273834

A comparison of single- and multi-site calibration and validation: a case study of SWAT in the Miyun Reservoir watershed, China

NASA Astrophysics Data System (ADS)

Bai, Jianwen; Shen, Zhenyao; Yan, Tiezhu

2017-09-01

An essential task in evaluating global water resource and pollution problems is to obtain the optimum set of parameters in hydrological models through calibration and validation. For a large-scale watershed, single-site calibration and validation may ignore spatial heterogeneity and may not meet the needs of the entire watershed. The goal of this study is to apply a multi-site calibration and validation of the Soil andWater Assessment Tool (SWAT), using the observed flow data at three monitoring sites within the Baihe watershed of the Miyun Reservoir watershed, China. Our results indicate that the multi-site calibration parameter values are more reasonable than those obtained from single-site calibrations. These results are mainly due to significant differences in the topographic factors over the large-scale area, human activities and climate variability. The multi-site method involves the division of the large watershed into smaller watersheds, and applying the calibrated parameters of the multi-site calibration to the entire watershed. It was anticipated that this case study could provide experience of multi-site calibration in a large-scale basin, and provide a good foundation for the simulation of other pollutants in followup work in the Miyun Reservoir watershed and other similar large areas.

Economic Tools for Managing Nitrogen in Coastal Watersheds ...

EPA Pesticide Factsheets

Watershed managers are interested in using economics to communicate the value of estuarine resources to the wider community, determine the most cost-effective means to reduce nitrogen pollution, and evaluate the benefits of taking action to improve coastal ecosystems. We spoke to coastal watershed managers who had commissioned economic studies and found that they were largely satisfied with the information and their ability to communicate the importance of coastal ecosystems. However, while managers were able to use these studies as communication tools, methods used in some studies were inconsistent with what some economists consider best practices. In addition, many watershed managers are grappling with how to implement nitrogen management activities in a way that is both cost-effective and achieves environmental goals, while maintaining public support. These and other issues led to this project. Our intent is to provide information to watershed managers and others interested in watershed management – such as National Estuary Programs, local governments, or nongovernmental organizations – on economic tools for managing nitrogen in coastal watersheds, and to economists and other analysts who are interested in assisting them in meeting their needs. Watershed management requires balancing scientific, political, and social issues to solve environmental problems. This document summarizes questions that watershed managers have about using economic analysis, and g

Remote sensing techniques for prediction of watershed runoff

NASA Technical Reports Server (NTRS)

Blanchard, B. J.

1975-01-01

Hydrologic parameters of watersheds for use in mathematical models and as design criteria for flood detention structures are sometimes difficult to quantify using conventional measuring systems. The advent of remote sensing devices developed in the past decade offers the possibility that watershed characteristics such as vegetative cover, soils, soil moisture, etc., may be quantified rapidly and economically. Experiments with visible and near infrared data from the LANDSAT-1 multispectral scanner indicate a simple technique for calibration of runoff equation coefficients is feasible. The technique was tested on 10 watersheds in the Chickasha area and test results show more accurate runoff coefficients were obtained than with conventional methods. The technique worked equally as well using a dry fall scene. The runoff equation coefficients were then predicted for 22 subwatersheds with flood detention structures. Predicted values were again more accurate than coefficients produced by conventional methods.

Sediment and nutrients transport in watershed and their impact on coastal environment

PubMed Central

Ikeda, Syunsuke; Osawa, Kazutoshi; Akamatsu, Yoshihisa

2009-01-01

Sediment and nutrients yields especially from farmlands were studied in a watershed in Ishigaki island, Okinawa, Japan. The transport processes of these materials in rivers, mangrove, lagoon and coastal zones were studied by using various observation methods including stable isotope analysis. They were simulated by using a WEPP model which was modified to be applicable to such small islands by identifying several factors from the observations. The model predicts that a proper combination of civil engineering countermeasure and change of farming method can reduce the sediment yield from the watershed by 74%. Observations of water quality and coral recruitment test in Nagura bay indicate that the water is eutrophicated and the corals cannot grow for a long time. Based on these observations, a quantitative target of the reduction of sediment and nutrients yield in watershed can be decided rationally. PMID:19907124

Spatial distribution of soil organic carbon and total nitrogen based on GIS and geostatistics in a small watershed in a hilly area of northern China.

PubMed

Peng, Gao; Bing, Wang; Guangpo, Geng; Guangcan, Zhang

2013-01-01

The spatial variability of soil organic carbon (SOC) and total nitrogen (STN) levels is important in both global carbon-nitrogen cycle and climate change research. There has been little research on the spatial distribution of SOC and STN at the watershed scale based on geographic information systems (GIS) and geostatistics. Ninety-seven soil samples taken at depths of 0-20 cm were collected during October 2010 and 2011 from the Matiyu small watershed (4.2 km(2)) of a hilly area in Shandong Province, northern China. The impacts of different land use types, elevation, vegetation coverage and other factors on SOC and STN spatial distributions were examined using GIS and a geostatistical method, regression-kriging. The results show that the concentration variations of SOC and STN in the Matiyu small watershed were moderate variation based on the mean, median, minimum and maximum, and the coefficients of variation (CV). Residual values of SOC and STN had moderate spatial autocorrelations, and the Nugget/Sill were 0.2% and 0.1%, respectively. Distribution maps of regression-kriging revealed that both SOC and STN concentrations in the Matiyu watershed decreased from southeast to northwest. This result was similar to the watershed DEM trend and significantly correlated with land use type, elevation and aspect. SOC and STN predictions with the regression-kriging method were more accurate than those obtained using ordinary kriging. This research indicates that geostatistical characteristics of SOC and STN concentrations in the watershed were closely related to both land-use type and spatial topographic structure and that regression-kriging is suitable for investigating the spatial distributions of SOC and STN in the complex topography of the watershed.

Spatial Distribution of Soil Organic Carbon and Total Nitrogen Based on GIS and Geostatistics in a Small Watershed in a Hilly Area of Northern China

PubMed Central

Peng, Gao; Bing, Wang; Guangpo, Geng; Guangcan, Zhang

2013-01-01

The spatial variability of soil organic carbon (SOC) and total nitrogen (STN) levels is important in both global carbon-nitrogen cycle and climate change research. There has been little research on the spatial distribution of SOC and STN at the watershed scale based on geographic information systems (GIS) and geostatistics. Ninety-seven soil samples taken at depths of 0–20 cm were collected during October 2010 and 2011 from the Matiyu small watershed (4.2 km2) of a hilly area in Shandong Province, northern China. The impacts of different land use types, elevation, vegetation coverage and other factors on SOC and STN spatial distributions were examined using GIS and a geostatistical method, regression-kriging. The results show that the concentration variations of SOC and STN in the Matiyu small watershed were moderate variation based on the mean, median, minimum and maximum, and the coefficients of variation (CV). Residual values of SOC and STN had moderate spatial autocorrelations, and the Nugget/Sill were 0.2% and 0.1%, respectively. Distribution maps of regression-kriging revealed that both SOC and STN concentrations in the Matiyu watershed decreased from southeast to northwest. This result was similar to the watershed DEM trend and significantly correlated with land use type, elevation and aspect. SOC and STN predictions with the regression-kriging method were more accurate than those obtained using ordinary kriging. This research indicates that geostatistical characteristics of SOC and STN concentrations in the watershed were closely related to both land-use type and spatial topographic structure and that regression-kriging is suitable for investigating the spatial distributions of SOC and STN in the complex topography of the watershed. PMID:24391791

Geolocation of man-made reservoirs across terrains of varying complexity using GIS

USGS Publications Warehouse

Mixon, D.M.; Kinner, D.A.; Stallard, R.F.; Syvitski, J.P.M.

2008-01-01

The Reservoir Sedimentation Survey Information System (RESIS) is one of the world's most comprehensive databases of reservoir sedimentation rates, comprising nearly 6000 surveys for 1819 reservoirs across the continental United States. Sediment surveys in the database date from 1904 to 1999, though more than 95% of surveys were entered prior to 1980, making RESIS largely a historical database. The use of this database for large-scale studies has been limited by the lack of precise coordinates for the reservoirs. Many of the reservoirs are relatively small structures and do not appear on current USGS topographic maps. Others have been renamed or have only approximate (i.e. township and range) coordinates. This paper presents a method scripted in ESRI's ARC Macro Language (AML) to locate the reservoirs on digital elevation models using information available in RESIS. The script also delineates the contributing watersheds and compiles several hydrologically important parameters for each reservoir. Evaluation of the method indicates that, for watersheds larger than 5 km2, the correct outlet is identified over 80% of the time. The importance of identifying the watershed outlet correctly depends on the application. Our intent is to collect spatial data for watersheds across the continental United States and describe the land use, soils, and topography for each reservoir's watershed. Because of local landscape similarity in these properties, we show that choosing the incorrect watershed does not necessarily mean that the watershed characteristics will be misrepresented. We present a measure termed terrain complexity and examine its relationship to geolocation success rate and its influence on the similarity of nearby watersheds. ?? 2008 Elsevier Ltd. All rights reserved.

Estimation and comparision of curve numbers based on dynamic land use land cover change, observed rainfall-runoff data and land slope

NASA Astrophysics Data System (ADS)

Deshmukh, Dhananjay Suresh; Chaube, Umesh Chandra; Ekube Hailu, Ambaye; Aberra Gudeta, Dida; Tegene Kassa, Melaku

2013-06-01

The CN represents runoff potential is estimated using three different methods for three watersheds namely Barureva, Sher and Umar watershed located in Narmada basin. Among three watersheds, Sher watershed has gauging site for the runoff measurements. The CN computed from the observed rainfall-runoff events is termed as CN(PQ), land use and land cover (LULC) is termed as CN(LU) and the CN based on land slope is termed as SACN2. The estimated annual CN(PQ) varies from 69 to 87 over the 26 years data period with median 74 and average 75. The range of CN(PQ) from 70 to 79 are most significant values and these truly represent the AMC II condition for the Sher watershed. The annual CN(LU) was computed for all three watersheds using GIS and the years are 1973, 1989 and 2000. Satellite imagery of MSS, TM and ETM+ sensors are available for these years and obtained from the Global Land Cover Facility Data Center of Maryland University USA. The computed CN(LU) values show rising trend with the time and this trend is attributed to expansion of agriculture area in all watersheds. The predicted values of CN(LU) with time (year) can be used to predict runoff potential under the effect of change in LULC. Comparison of CN(LU) and CN(PQ) values shows close agreement and it also validates the classification of LULC. The estimation of slope adjusted SA-CN2 shows the significant difference over conventional CN for the hilly forest lands. For the micro watershed planning, SCS-CN method should be modified to incorporate the effect of change in land use and land cover along with effect of land slope.

Patterns and contributions of floodplain and legacy sediments remobilized from Piedmont streams of the mid-Atlantic U.S.

NASA Astrophysics Data System (ADS)

Donovan, Mitchell; Miller, Andrew; Baker, Matthew; Gellis, Allen

2015-04-01

The perceived role of streambank erosion as a contributor to watershed sediment yield is an important driver of policy decisions for managing downstream impacts in the United States. In the Piedmont physiographic province of the eastern U.S. and in other regions of the south and midwest, the issue of 'legacy' sediment stored in stream valleys has long been recognized as a consequence of rapid deforestation and erosive agricultural practices following European settlement. Remobilization of stored floodplain sediment by bank erosion is frequently cited as a dominant component of watershed sediment budgets, with legacy sediment comprising the largest portion of this source. However there are few published studies documenting spatially extensive measurements of channel change throughout the drainage network on time scales of more than a few years. In this study we document 1) rates of sediment remobilization from Baltimore County floodplains by channel migration and bank erosion, 2) proportions of streambank sediment derived from legacy deposits, and 3) potential contribution of net streambank erosion and legacy sediments to downstream sediment yield within the Mid-Atlantic Piedmont. We measured gross erosion and channel deposition rates over 45 years within the fluvial corridor along 40 valley segments from 18 watersheds with drainage areas between 0.18 and 155 km2 by comparing stream channel and floodplain morphology from LiDAR-based digital elevation data collected in 2005 with channel positions recorded on 1:2400-scale topographic maps from 1959-1961. Results were extrapolated to estimate contributions to watershed sediment yield from 1005 km2 of northern Baltimore County. Results indicate that legacy sediment is a dominant component (62%) of the sediment derived from bank erosion and that its relative importance is greater in larger valleys with broader valley floors and lower gradients. Although mass of sediment remobilized per unit channel length is greater in these downstream valleys, a majority of remobilized sediment (62%) is coming from first- and second-order tributaries because they represent the largest fraction of cumulative channel length in the drainage network. Floodplain segments are discontinuous along low-order tributaries but sediment contributions reported here are adjusted to account for the percent valley length bordered by floodplain sediments. Average annual lateral migration rates ranged from 0.04-0.19 m/y with higher rates along larger streams; however, when scaled by channel width, we find that on average streams are migrating 2.5% of channel width across all drainage areas. Direct measurements reported here account for in-channel deposition, but not floodplain deposition. Other studies in the region have demonstrated that redeposition on floodplains is an important component of the sediment budget and are necessary to avoid overestimating streambank erosion contributions to watershed sediment yield. We therefore adjust our measured sediment contributions by estimating the mass of sediment redeposited on floodplains within our study area. With this adjustment, extrapolated net stream bank sediment yields (72 Mg/km2/yr) are equivalent to 70% of the estimated average Piedmont watershed yield (104 Mg/km2/yr) cited by previous authors. Furthermore, our results demonstrate that measurements over adequate spatial and temporal scales- rather than short-term, localized observations- are required to accurately capture and measure patterns of streambank erosion across the drainage network. It is important to note that upland erosion rates- not measured here- have been reported with equivalent and greater magnitude for forested and cropland areas within the Maryland Piedmont and therefore should not be assumed to contribute only 30% of the total.

Water and nonpoint source pollution estimation in the watershed with limited data availability based on hydrological simulation and regression model.

PubMed

Huiliang, Wang; Zening, Wu; Caihong, Hu; Xinzhong, Du

2015-09-01

Nonpoint source (NPS) pollution is considered as the main reason for water quality deterioration; thus, to quantify the NPS loads reliably is the key to implement watershed management practices. In this study, water quality and NPS loads from a watershed with limited data availability were studied in a mountainous area in China. Instantaneous water discharge was measured through the velocity-area method, and samples were taken for water quality analysis in both flood and nonflood days in 2010. The streamflow simulated by Hydrological Simulation Program-Fortran (HSPF) from 1995 to 2013 and a regression model were used to estimate total annual loads of various water quality parameters. The concentrations of total phosphorus (TP) and total nitrogen (TN) were much higher during the flood seasons, but the concentrations of ammonia nitrogen (NH3-N) and nitrate nitrogen (NO3-N) were lower during the flood seasons. Nevertheless, only TP concentration was positively correlated with the flow rate. The fluctuation of annual load from this watershed was significant. Statistical results indicated the significant contribution of pollutant fluxes during flood seasons to annual fluxes. The loads of TP, TN, NH3-N, and NO3-N in the flood seasons were accounted for 58-85, 60-82, 63-88, 64-81% of the total annual loads, respectively. This study presented a new method for estimation of the water and NPS loads in the watershed with limited data availability, which simplified data collection to watershed model and overcame the scale problem of field experiment method.

A method to quantify and value floodplain sediment and nutrient retention ecosystem services

USGS Publications Warehouse

Hopkins, Kristina G.; Noe, Gregory; Franco, Fabiano; Pindilli, Emily J.; Gordon, Stephanie; Metes, Marina J.; Claggett, Peter; Gellis, Allen; Hupp, Cliff R.; Hogan, Dianna

2018-01-01

Floodplains provide critical ecosystem services to local and downstream communities by retaining floodwaters, sediments, and nutrients. The dynamic nature of floodplains is such that these areas can both accumulate sediment and nutrients through deposition, and export material downstream through erosion. Therefore, estimating floodplain sediment and nutrient retention should consider the net flux of both depositional and erosive processes. An ecosystem services framework was used to quantify and value the sediment and nutrient ecosystem service provided by floodplains in the Difficult Run watershed, a small (151 km2) suburban watershed located in the Piedmont of Virginia (USA). A sediment balance was developed for Difficult Run and two nested watersheds. The balance included upland sediment delivery to streams, stream bank flux, floodplain flux, and stream load. Upland sediment delivery was estimated using geospatial datasets and a modified Revised Universal Soil Loss Equation. Predictive models were developed to extrapolate field measurements of the flux of sediment, sediment-bound nitrogen (N), and sediment-bound phosphorus (P) from stream banks and floodplains to 3232 delineated stream segments in the study area. A replacement cost approach was used to estimate the economic value of the sediment and nutrient retention ecosystem service based on estimated net stream bank and floodplain flux of sediment-bound N for all streams in the study area. Results indicated the net fluvial fluxes of sediment, sediment-bound N, and sediment-bound P were −10,439 Mg yr−1 (net export), 57,300 kg-N yr−1(net trapping), and 98 kg-P yr−1(net trapping), respectively. For sediment, floodplain retention was offset by substantial losses from stream bank erosion, particularly in headwater catchments, resulting in a net export of sediment. Nutrient retention in the floodplain exceeded that lost through stream bank erosion resulting in net retention of nutrients (TN and TP). Using a conservative cost estimate of $12.69 (USD) per kilogram of nitrogen, derived from wastewater treatment costs, the estimated annual value for sediment and nutrient retention on Difficult Run floodplains was $727,226 ± 194,220 USD/yr. Values and differences in floodplain nitrogen retention among stream reaches can be used to target areas for floodplain conservation and stream restoration. The methods presented are scalable and transferable to other areas if appropriate datasets are available for validation.

Sources and species of cryptosporidium oocysts in the Wachusett Reservoir watershed.

PubMed

Jellison, Kristen L; Hemond, Harold F; Schauer, David B

2002-02-01

Understanding the behavior of Cryptosporidium oocysts in the environment is critical to developing improved watershed management practices for protection of the public from waterborne cryptosporidiosis. Analytical methods of improved specificity and sensitivity are essential to this task. We developed a nested PCR-restriction fragment length polymorphism assay that allows detection of a single oocyst in environmental samples and differentiates the human pathogen Cryptosporidium parvum from other Cryptosporidium species. We tested our method on surface water and animal fecal samples from the Wachusett Reservoir watershed in central Massachusetts. We also directly compared results from our method with those from the immunofluorescence microscopy assay recommended in the Information Collection Rule. Our results suggest that immunofluorescence microscopy may not be a reliable indicator of public health risk for waterborne cryptosporidiosis. Molecular and environmental data identify both wildlife and dairy farms as sources of oocysts in the watershed, implicate times of cold water temperatures as high-risk periods for oocyst contamination of surface waters, and suggest that not all oocysts in the environment pose a threat to public health.

Lone star tick abundance, fire, and bison grazing in tall-grass prairie

USGS Publications Warehouse

Cully, J.F.

1999-01-01

Lone star ticks (Amblyomma americanum L.) were collected by drag samples of 1 km transects on 12 watersheds at Konza Prairie Research Natural Area near Manhattan, Kans., during summer 1995-1996. Watersheds were treated to 2 experimental treatments: 3 burn intervals (1-year, 4-year, and 20-year) and 2 grazing treatments (grazed by bison (Bos bison L.) or ungrazed). The objectives were to determine whether fire interval, time since most recent burn, and the presence of large ungulate grazers would cause changes in lone star tick abundance in tallgrass prairie in central Kansas. Watersheds burned at 1-year intervals had fewer larvae and adults than watersheds burned at 4-year or 20-year intervals. Watersheds burned during the year of sampling had fewer ticks than watersheds burned one or more years in the past. For watersheds burned 1 or more years in the past there was no effect from time since burn. The presence of bison did not affect tick abundance. Spring burning is an effective method to reduce tick populations in tallgrass prairie during the year of the burn.

Fully convolutional neural network for removing background in noisy images of uranium bearing particles

DOE Office of Scientific and Technical Information (OSTI.GOV)

Tarolli, Jay G.; Naes, Benjamin E.; Butler, Lamar

A fully convolutional neural network (FCN) was developed to supersede automatic or manual thresholding algorithms used for tabulating SIMS particle search data. The FCN was designed to perform a binary classification of pixels in each image belonging to a particle or not, thereby effectively removing background signal without manually or automatically determining an intensity threshold. Using 8,000 images from 28 different particle screening analyses, the FCN was trained to accurately predict pixels belonging to a particle with near 99% accuracy. Background eliminated images were then segmented using a watershed technique in order to determine isotopic ratios of particles. A comparisonmore » of the isotopic distributions of an independent data set segmented using the neural network, compared to a commercially available automated particle measurement (APM) program developed by CAMECA, highlighted the necessity for effective background removal to ensure that resulting particle identification is not only accurate, but preserves valuable signal that could be lost due to improper segmentation. The FCN approach improves the robustness of current state-of-the-art particle searching algorithms by reducing user input biases, resulting in an improved absolute signal per particle and decreased uncertainty of the determined isotope ratios.« less

Detection of Aspens Using High Resolution Aerial Laser Scanning Data and Digital Aerial Images

PubMed Central

Säynäjoki, Raita; Packalén, Petteri; Maltamo, Matti; Vehmas, Mikko; Eerikäinen, Kalle

2008-01-01

The aim was to use high resolution Aerial Laser Scanning (ALS) data and aerial images to detect European aspen (Populus tremula L.) from among other deciduous trees. The field data consisted of 14 sample plots of 30 m × 30 m size located in the Koli National Park in the North Karelia, Eastern Finland. A Canopy Height Model (CHM) was interpolated from the ALS data with a pulse density of 3.86/m2, low-pass filtered using Height-Based Filtering (HBF) and binarized to create the mask needed to separate the ground pixels from the canopy pixels within individual areas. Watershed segmentation was applied to the low-pass filtered CHM in order to create preliminary canopy segments, from which the non-canopy elements were extracted to obtain the final canopy segmentation, i.e. the ground mask was analysed against the canopy mask. A manual classification of aerial images was employed to separate the canopy segments of deciduous trees from those of coniferous trees. Finally, linear discriminant analysis was applied to the correctly classified canopy segments of deciduous trees to classify them into segments belonging to aspen and those belonging to other deciduous trees. The independent variables used in the classification were obtained from the first pulse ALS point data. The accuracy of discrimination between aspen and other deciduous trees was 78.6%. The independent variables in the classification function were the proportion of vegetation hits, the standard deviation of in pulse heights, accumulated intensity at the 90th percentile and the proportion of laser points reflected at the 60th height percentile. The accuracy of classification corresponded to the validation results of earlier ALS-based studies on the classification of individual deciduous trees to tree species. PMID:27873799

Simulation of streamflow and estimation of recharge to the Edwards aquifer in the Hondo Creek, Verde Creek, and San Geronimo Creek watersheds, south-central Texas, 1951-2003

USGS Publications Warehouse

Ockerman, Darwin J.

2005-01-01

The U.S. Geological Survey, in cooperation with the San Antonio Water System, constructed three watershed models using the Hydrological Simulation Program—FORTRAN (HSPF) to simulate streamflow and estimate recharge to the Edwards aquifer in the Hondo Creek, Verde Creek, and San Geronimo Creek watersheds in south-central Texas. The three models were calibrated and tested with available data collected during 1992–2003. Simulations of streamflow and recharge were done for 1951–2003. The approach to construct the models was to first calibrate the Hondo Creek model (with an hourly time step) using 1992–99 data and test the model using 2000–2003 data. The Hondo Creek model parameters then were applied to the Verde Creek and San Geronimo Creek watersheds to construct the Verde Creek and San Geronimo Creek models. The simulated streamflows for Hondo Creek are considered acceptable. Annual, monthly, and daily simulated streamflows adequately match measured values, but simulated hourly streamflows do not. The accuracy of streamflow simulations for Verde Creek is uncertain. For San Geronimo Creek, the match of measured and simulated annual and monthly streamflows is acceptable (or nearly so); but for daily and hourly streamflows, the calibration is relatively poor. Simulated average annual total streamflow for 1951–2003 to Hondo Creek, Verde Creek, and San Geronimo Creek is 45,400; 32,400; and 11,100 acre-feet, respectively. Simulated average annual streamflow at the respective watershed outlets is 13,000; 16,200; and 6,920 acre-feet. The difference between total streamflow and streamflow at the watershed outlet is streamflow lost to channel infiltration. Estimated average annual Edwards aquifer recharge for Hondo Creek, Verde Creek, and San Geronimo Creek watersheds for 1951–2003 is 37,900 acrefeet (5.04 inches), 26,000 acre-feet (3.36 inches), and 5,940 acre-feet (1.97 inches), respectively. Most of the recharge (about 77 percent for the three watersheds together) occurs as streamflow channel infiltration. Diffuse recharge (direct infiltration of rainfall to the aquifer) accounts for the remaining 23 percent of recharge. For the Hondo Creek watershed, the HSPF recharge estimates for 1992–2003 averaged about 22 percent less than those estimated by the Puente method, a method the U.S. Geological Survey has used to compute annual recharge to the Edwards aquifer since 1978. HSPF recharge estimates for the Verde Creek watershed average about 40 percent less than those estimated by the Puente method.

Effects of spatial orientation of prairie vegetation in an agricultural landscape on curve number values

NASA Astrophysics Data System (ADS)

Franz, K.; Dziubanski, D.; Helmers, M. J.

2015-12-01

The simplicity of the Curve Number (CN) method, which summarizes an area's hydrologic soil group, land cover, treatment, and hydrologic condition into a single number, make it a consistently popular choice for modelers. When multiple land cover types are present, a weighted average of the CNs is used. However, the weighted CN does not account for the spatial distribution of different land cover types within the watershed. To overcome this limitation, it becomes necessary to discretize the model into homogenous subunits, perhaps even to the hillslope scale, leading to a more complex model application. The objective of this study is to empirically derive CN values that reflect the effects of placements of native prairie vegetation (NPV) within agricultural landscapes. We derived CN values using precipitation and runoff data from (May 1 - Sept 30 over a 7 year period (2008 - 2014) for 9 ephemeral watersheds in Iowa (USA) ranging from 0.47 to 3.19 ha. The watersheds were planted with varying extents of NPV (0%, 10%, 20%) in different watershed positions (footslope vs. contour strips), with the rest of the watershed as row crop. The derived CN values from watersheds with all row crop were consistent with published values and watersheds with NPV had an average CN reduction of 6.4%, with a maximum reduction of 11.6%. Four of the six sites with treatment had a lower CN than one calculated using a weighted average of look-up values, indicating that accounting for placement of vegetation within the landscape is important for modeling runoff with the CN method. The derived CNs were verified using the leave-one-year-out method (computing CN using data from 6 of the 7 years, and then estimating runoff on the seventh year with that CN). Nash-Sutcliffe Efficiency (NSE) values for the estimated runoff typically ranged from 0.4-0.6. Our results suggest that the new CNs could confidently be used in future modeling studies to explore the hydrologic impacts of the NPV treatments at increasingly larger watershed scales.

EVALUATION OF CRYPTOSPORIDIUM OOCYSTS AND GIARDIA CYSTS IN A WATERSHED RESERVOIR

EPA Science Inventory

This investigation evaluated the occurrence of Cryptosporidium oocysts and Giardia cysts at 17 sampling locations in Lake Texoma reservoir using method 1623 with standard Envirocheck" capsule filters. The watershed serves rural agricultural communities active in cattle ranching,...

EVALUATION OF CRYPTOSPORIDIUM OOCYSTS AND GIARDIA CYSTS IN A WATERSHED RESERVOIR

EPA Science Inventory

This investigation evaluated the occurrence of Cryptosporidium oocysts and Giardia cysts at 17 sampling locations in Lake Texoma reservoir using method 1623 with standard Envirocheck™ capsule filters. The watershed serves rural agricultural communities active in cattle ranching, ...

Floodplain Mapping for the Continental United States Using Machine Learning Techniques and Watershed Characteristics

NASA Astrophysics Data System (ADS)

Jafarzadegan, K.; Merwade, V.; Saksena, S.

2017-12-01

Using conventional hydrodynamic methods for floodplain mapping in large-scale and data-scarce regions is problematic due to the high cost of these methods, lack of reliable data and uncertainty propagation. In this study a new framework is proposed to generate 100-year floodplains for any gauged or ungauged watershed across the United States (U.S.). This framework uses Flood Insurance Rate Maps (FIRMs), topographic, climatic and land use data which are freely available for entire U.S. for floodplain mapping. The framework consists of three components, including a Random Forest classifier for watershed classification, a Probabilistic Threshold Binary Classifier (PTBC) for generating the floodplains, and a lookup table for linking the Random Forest classifier to the PTBC. The effectiveness and reliability of the proposed framework is tested on 145 watersheds from various geographical locations in the U.S. The validation results show that around 80 percent of total watersheds are predicted well, 14 percent have acceptable fit and less than five percent are predicted poorly compared to FIRMs. Another advantage of this framework is its ability in generating floodplains for all small rivers and tributaries. Due to the high accuracy and efficiency of this framework, it can be used as a preliminary decision making tool to generate 100-year floodplain maps for data-scarce regions and all tributaries where hydrodynamic methods are difficult to use.

Bayesian Non-Stationary Index Gauge Modeling of Gridded Precipitation Extremes

NASA Astrophysics Data System (ADS)

Verdin, A.; Bracken, C.; Caldwell, J.; Balaji, R.; Funk, C. C.

2017-12-01

We propose a Bayesian non-stationary model to generate watershed scale gridded estimates of extreme precipitation return levels. The Climate Hazards Group Infrared Precipitation with Stations (CHIRPS) dataset is used to obtain gridded seasonal precipitation extremes over the Taylor Park watershed in Colorado for the period 1981-2016. For each year, grid cells within the Taylor Park watershed are aggregated to a representative "index gauge," which is input to the model. Precipitation-frequency curves for the index gauge are estimated for each year, using climate variables with significant teleconnections as proxies. Such proxies enable short-term forecasting of extremes for the upcoming season. Disaggregation ratios of the index gauge to the grid cells within the watershed are computed for each year and preserved to translate the index gauge precipitation-frequency curve to gridded precipitation-frequency maps for select return periods. Gridded precipitation-frequency maps are of the same spatial resolution as CHIRPS (0.05° x 0.05°). We verify that the disaggregation method preserves spatial coherency of extremes in the Taylor Park watershed. Validation of the index gauge extreme precipitation-frequency method consists of ensuring extreme value statistics are preserved on a grid cell basis. To this end, a non-stationary extreme precipitation-frequency analysis is performed on each grid cell individually, and the resulting frequency curves are compared to those produced by the index gauge disaggregation method.

A field method for soil erosion measurements in agricultural and natural lands

Treesearch

Y.P. Hsieh; K.T. Grant; G.C. Bugna

2009-01-01

Soil erosion is one of the most important watershed processes in nature, yet quantifying it under field conditions remains a challenge. The lack of soil erosion field data is a major factor hindering our ability to predict soil erosion in a watershed. We present here the development of a simple and sensitive field method that quantifies soil erosion and the resulting...

Rates of biotite weathering, and clay mineral transformation and neoformation, determined from watershed geochemical mass-balance methods for the Coweeta Hydrologic Laboratory, Southern Blue Ridge Mountains, North Carolina, USA

Treesearch

Jason R. Price; Michael A. Velbel

2013-01-01

Biotite is a common constituent of silicate bedrock. Its weathering releases plant nutrients and consumes atmospheric CO2. Because of its stoichiometric relationship with its transformational weathering product and sensitivity to botanical activity, calculating biotite weathering rates using watershed mass-balance methods has proven challenging....

Reduction of uncertainty for estimating runoff with the NRCS CN model by the adaptation to local climatic conditions

NASA Astrophysics Data System (ADS)

Durán-Barroso, Pablo; González, Javier; Valdés, Juan B.

2016-04-01

Rainfall-runoff quantification is one of the most important tasks in both engineering and watershed management as it allows to identify, forecast and explain watershed response. For that purpose, the Natural Resources Conservation Service Curve Number method (NRCS CN) is the conceptual lumped model more recognized in the field of rainfall-runoff estimation. Furthermore, there is still an ongoing discussion about the procedure to determine the portion of rainfall retained in the watershed before runoff is generated, called as initial abstractions. This concept is computed as a ratio (λ) of the soil potential maximum retention S of the watershed. Initially, this ratio was assumed to be 0.2, but later it has been proposed to be modified to 0.05. However, the actual procedures to convert NRCS CN model parameters obtained under a different hypothesis about λ do not incorporate any adaptation of climatic conditions of each watershed. By this reason, we propose a new simple method for computing model parameters which is adapted to local conditions taking into account regional patterns of climate conditions. After checking the goodness of this procedure against the actual ones in 34 different watersheds located in Ohio and Texas (United States), we concluded that this novel methodology represents the most accurate and efficient alternative to refit the initial abstraction ratio.

Flexible methods for segmentation evaluation: results from CT-based luggage screening.

PubMed

Karimi, Seemeen; Jiang, Xiaoqian; Cosman, Pamela; Martz, Harry

2014-01-01

Imaging systems used in aviation security include segmentation algorithms in an automatic threat recognition pipeline. The segmentation algorithms evolve in response to emerging threats and changing performance requirements. Analysis of segmentation algorithms' behavior, including the nature of errors and feature recovery, facilitates their development. However, evaluation methods from the literature provide limited characterization of the segmentation algorithms. To develop segmentation evaluation methods that measure systematic errors such as oversegmentation and undersegmentation, outliers, and overall errors. The methods must measure feature recovery and allow us to prioritize segments. We developed two complementary evaluation methods using statistical techniques and information theory. We also created a semi-automatic method to define ground truth from 3D images. We applied our methods to evaluate five segmentation algorithms developed for CT luggage screening. We validated our methods with synthetic problems and an observer evaluation. Both methods selected the same best segmentation algorithm. Human evaluation confirmed the findings. The measurement of systematic errors and prioritization helped in understanding the behavior of each segmentation algorithm. Our evaluation methods allow us to measure and explain the accuracy of segmentation algorithms.

Detecting wood surface defects with fusion algorithm of visual saliency and local threshold segmentation

NASA Astrophysics Data System (ADS)

Wang, Xuejuan; Wu, Shuhang; Liu, Yunpeng

2018-04-01

This paper presents a new method for wood defect detection. It can solve the over-segmentation problem existing in local threshold segmentation methods. This method effectively takes advantages of visual saliency and local threshold segmentation. Firstly, defect areas are coarsely located by using spectral residual method to calculate global visual saliency of them. Then, the threshold segmentation of maximum inter-class variance method is adopted for positioning and segmenting the wood surface defects precisely around the coarse located areas. Lastly, we use mathematical morphology to process the binary images after segmentation, which reduces the noise and small false objects. Experiments on test images of insect hole, dead knot and sound knot show that the method we proposed obtains ideal segmentation results and is superior to the existing segmentation methods based on edge detection, OSTU and threshold segmentation.

Application of the ReNuMa model in the Sha He river watershed: tools for watershed environmental management.

PubMed

Sha, Jian; Liu, Min; Wang, Dong; Swaney, Dennis P; Wang, Yuqiu

2013-07-30

Models and related analytical methods are critical tools for use in modern watershed management. A modeling approach for quantifying the source apportionment of dissolved nitrogen (DN) and associated tools for examining the sensitivity and uncertainty of the model estimates were assessed for the Sha He River (SHR) watershed in China. The Regional Nutrient Management model (ReNuMa) was used to infer the primary sources of DN in the SHR watershed. This model is based on the Generalized Watershed Loading Functions (GWLF) and the Net Anthropogenic Nutrient Input (NANI) framework, modified to improve the characterization of subsurface hydrology and septic system loads. Hydrochemical processes of the SHR watershed, including streamflow, DN load fluxes, and corresponding DN concentration responses, were simulated following calibrations against observations of streamflow and DN fluxes. Uncertainty analyses were conducted with a Monte Carlo analysis to vary model parameters for assessing the associated variations in model outputs. The model performed accurately at the watershed scale and provided estimates of monthly streamflows and nutrient loads as well as DN source apportionments. The simulations identified the dominant contribution of agricultural land use and significant monthly variations. These results provide valuable support for science-based watershed management decisions and indicate the utility of ReNuMa for such applications. Copyright © 2013 Elsevier Ltd. All rights reserved.

Increasing the speed of medical image processing in MatLab®

PubMed Central

Bister, M; Yap, CS; Ng, KH; Tok, CH

2007-01-01

MatLab® has often been considered an excellent environment for fast algorithm development but is generally perceived as slow and hence not fit for routine medical image processing, where large data sets are now available e.g., high-resolution CT image sets with typically hundreds of 512x512 slices. Yet, with proper programming practices – vectorization, pre-allocation and specialization – applications in MatLab® can run as fast as in C language. In this article, this point is illustrated with fast implementations of bilinear interpolation, watershed segmentation and volume rendering. PMID:21614269

Changing Regulations of COD Pollution Load of Weihe River Watershed above TongGuan Section, China

NASA Astrophysics Data System (ADS)

Zhu, Lei; Liu, WanQing

2018-02-01

TongGuan Section of Weihe River Watershed is a provincial section between Shaanxi Province and Henan Province, China. Weihe River Watershed above TongGuan Section is taken as the research objective in this paper and COD is chosen as the water quality parameter. According to the discharge characteristics of point source pollutions and non-point source pollutions, a method—characteristic section load (CSLD) method is suggested and point and non-point source pollution loads of Weihe River Watershed above TongGuan Section are calculated in the rainy, normal and dry season in 2013. The results show that the monthly point source pollution loads of Weihe River Watershed above TongGuan Section discharge stably and the monthly non-point source pollution loads of Weihe River Watershed above TongGuan Section change greatly and the non-point source pollution load proportions of total pollution load of COD decrease in the rainy, wet and normal period in turn.

Sediment contributions from floodplains and legacy sediments to Piedmont streams of Baltimore County, Maryland

NASA Astrophysics Data System (ADS)

Donovan, Mitchell; Miller, Andrew; Baker, Matthew; Gellis, Allen

2015-04-01

Disparity between watershed erosion rates and downstream sediment delivery has remained an important theme in geomorphology for many decades, with the role of floodplains in sediment storage as a common focus. In the Piedmont Province of the eastern USA, upland deforestation and agricultural land use following European settlement led to accumulation of thick packages of overbank sediment in valley bottoms, commonly referred to as legacy deposits. Previous authors have argued that legacy deposits represent a potentially important source of modern sediment loads following remobilization by lateral migration and progressive channel widening. This paper seeks to quantify (1) rates of sediment remobilization from Baltimore County floodplains by channel migration and bank erosion, (2) proportions of streambank sediment derived from legacy deposits, and (3) potential contribution of net streambank erosion and legacy sediments to downstream sediment yield within the Mid-Atlantic Piedmont. We calculated measurable gross erosion and deposition rates within the fluvial corridor along 40 valley segments from 18 watersheds with drainage areas between 0.18 and 155 km2 in Baltimore County, Maryland. We compared stream channel and floodplain morphology from lidar-based digital elevation data collected in 2005 with channel positions recorded on 1:2400 scale topographic maps from 1959-1961 in order to quantify 44-46 years of channel change. Sediment bulk density and particle size distributions were characterized from streambank and channel deposit samples and used for volume to mass conversions and for comparison with other sediment sources. Average annual lateral migration rates ranged from 0.04 to 0.19 m/y, which represented an annual migration of 2.5% (0.9-4.4%) channel width across all study segments, suggesting that channel dimensions may be used as reasonable predictors of bank erosion rates. Gross bank erosion rates varied from 43 to 310 Mg/km/y (median = 114) and were positively correlated with drainage area. Measured deposition within channels accounted for an average of 46% (28-75%) of gross erosion, with deposition increasingly important in larger drainages. Legacy sediments accounted for 6-90% of bank erosion at individual study segments, represented about 60% of bank height at most exposures, and accounted for 57% (± 16%) of the measured gross erosion. Extrapolated results indicated that first- and second-order streams accounted for 62% (± 38%) of total streambank erosion from 1005 km2 of northern Baltimore County. After accounting for estimated redeposition, extrapolated net streambank sediment yields (72 Mg/km2/y) constituted 70% of estimated average Piedmont watershed yields (104 Mg/km2/y). The results suggest that streambank sediments are a relatively large source of sediment from Piedmont tributaries to the Chesapeake Bay.

Sediment contributions from floodplains and legacy sediments to Piedmont streams of Baltimore County, Maryland

USGS Publications Warehouse

Donovan, Mitchell; Miller, Andrew; Baker, Matthew; Gellis, Allen C.

2015-01-01

Disparity between watershed erosion rates and downstream sediment delivery has remained an important theme in geomorphology for many decades, with the role of floodplains in sediment storage as a common focus. In the Piedmont Province of the eastern USA, upland deforestation and agricultural land use following European settlement led to accumulation of thick packages of overbank sediment in valley bottoms, commonly referred to as legacy deposits. Previous authors have argued that legacy deposits represent a potentially important source of modern sediment loads following remobilization by lateral migration and progressive channel widening. This paper seeks to quantify (1) rates of sediment remobilization from Baltimore County floodplains by channel migration and bank erosion, (2) proportions of streambank sediment derived from legacy deposits, and (3) potential contribution of net streambank erosion and legacy sediments to downstream sediment yield within the Mid-Atlantic Piedmont.We calculated measurable gross erosion and deposition rates within the fluvial corridor along 40 valley segments from 18 watersheds with drainage areas between 0.18 and 155 km2 in Baltimore County, Maryland. We compared stream channel and floodplain morphology from lidar-based digital elevation data collected in 2005 with channel positions recorded on 1:2400 scale topographic maps from 1959–1961 in order to quantify 44–46 years of channel change. Sediment bulk density and particle size distributions were characterized from streambank and channel deposit samples and used for volume to mass conversions and for comparison with other sediment sources.Average annual lateral migration rates ranged from 0.04 to 0.19 m/y, which represented an annual migration of 2.5% (0.9–4.4%) channel width across all study segments, suggesting that channel dimensions may be used as reasonable predictors of bank erosion rates. Gross bank erosion rates varied from 43 to 310 Mg/km/y (median = 114) and were positively correlated with drainage area. Measured deposition within channels accounted for an average of 46% (28–75%) of gross erosion, with deposition increasingly important in larger drainages. Legacy sediments accounted for 6–90% of bank erosion at individual study segments, represented about 60% of bank height at most exposures, and accounted for 57% (± 16%) of the measured gross erosion. Extrapolated results indicated that first- and second-order streams accounted for 62% (± 38%) of total streambank erosion from 1005 km2 of northern Baltimore County. After accounting for estimated redeposition, extrapolated net streambank sediment yields (72 Mg/km2/y) constituted 70% of estimated average Piedmont watershed yields (104 Mg/km2/y). The results suggest that streambank sediments are a relatively large source of sediment from Piedmont tributaries to the Chesapeake Bay.

Simulating and evaluating best management practices for integrated landscape management scenarios in biofuel feedstock production: Evaluating Best Management Practices for Biofuel Feedstock Production

DOE Office of Scientific and Technical Information (OSTI.GOV)

Ha, Miae; Wu, May

Sound crop and land management strategies can maintain land productivity and improve the environmental sustainability of agricultural crop and feedstock production. This study evaluates the improvement of water sustainability through an integrated landscaping management strategy, where landscaping design, land management operations, crop systems, and agricultural best management practices (BMPs) play equal roles. The strategy was applied to the watershed of the South Fork Iowa River in Iowa, with a focus on implementing riparian buffers and converting low productivity land to provide cellulosic biomass while benefiting soil and water quality. The Soil and Water Assessment Tool (SWAT) was employed to simulatemore » the impact of integrated landscape design on nutrients, suspended sediments, and flow on the watershed and subbasin scales. First, the study evaluated the representation of buffer strip as a vegetative barrier and as a riparian buffer using trapping efficiency and area ratio methods in SWAT. For the riparian buffer, the area ratio method tends to be more conservative, especially in nitrate loadings, while the trapping efficiency method generates more optimistic results. The differences between the two methods increase with buffer width. The two methods may not be comparable for the field-scale vegetative barrier simulation because of limitations in model spatial resolution. Landscape scenarios were developed to quantify water quality under (1) current land use, (2) partial land conversion to switchgrass, and (3) riparian buffer implementation. Results show that when low productivity land (15.2% of total watershed land area) is converted to grow switchgrass, suspended sediment, total nitrogen, total phosphorus, and nitrate loadings are reduced by 69.3%, 55.5%, 46.1%, and 13.4%, respectively, in the watershed surface streams. The reduction was less extensive when riparian buffer strips (30 m or 50 m) were applied to the stream network at 1.4% of total land area in the watershed. At the subbasin level, the degree of nutrient and suspended sediment reduction varies extensively, ranging from a few percent up to 55%. Results indicate that effective landscape design on current agricultural land can potentially bring marked improvements in water quality and soil erosion control while producing food and fuel feedstock in the South Fork Iowa River watershed. The concept can be integrated with other watershed management programs to improve sustainability of land, water, and the ecosystem.« less

A Reliability Estimation in Modeling Watershed Runoff With Uncertainties

NASA Astrophysics Data System (ADS)

Melching, Charles S.; Yen, Ben Chie; Wenzel, Harry G., Jr.

1990-10-01

The reliability of simulation results produced by watershed runoff models is a function of uncertainties in nature, data, model parameters, and model structure. A framework is presented here for using a reliability analysis method (such as first-order second-moment techniques or Monte Carlo simulation) to evaluate the combined effect of the uncertainties on the reliability of output hydrographs from hydrologic models. For a given event the prediction reliability can be expressed in terms of the probability distribution of the estimated hydrologic variable. The peak discharge probability for a watershed in Illinois using the HEC-1 watershed model is given as an example. The study of the reliability of predictions from watershed models provides useful information on the stochastic nature of output from deterministic models subject to uncertainties and identifies the relative contribution of the various uncertainties to unreliability of model predictions.

Approaches to stream solute load estimation for solutes with varying dynamics from five diverse small watershed

USGS Publications Warehouse

Aulenbach, Brent T.; Burns, Douglas A.; Shanley, James B.; Yanai, Ruth D.; Bae, Kikang; Wild, Adam; Yang, Yang; Yi, Dong

2016-01-01

Estimating streamwater solute loads is a central objective of many water-quality monitoring and research studies, as loads are used to compare with atmospheric inputs, to infer biogeochemical processes, and to assess whether water quality is improving or degrading. In this study, we evaluate loads and associated errors to determine the best load estimation technique among three methods (a period-weighted approach, the regression-model method, and the composite method) based on a solute's concentration dynamics and sampling frequency. We evaluated a broad range of varying concentration dynamics with stream flow and season using four dissolved solutes (sulfate, silica, nitrate, and dissolved organic carbon) at five diverse small watersheds (Sleepers River Research Watershed, VT; Hubbard Brook Experimental Forest, NH; Biscuit Brook Watershed, NY; Panola Mountain Research Watershed, GA; and Río Mameyes Watershed, PR) with fairly high-frequency sampling during a 10- to 11-yr period. Data sets with three different sampling frequencies were derived from the full data set at each site (weekly plus storm/snowmelt events, weekly, and monthly) and errors in loads were assessed for the study period, annually, and monthly. For solutes that had a moderate to strong concentration–discharge relation, the composite method performed best, unless the autocorrelation of the model residuals was <0.2, in which case the regression-model method was most appropriate. For solutes that had a nonexistent or weak concentration–discharge relation (modelR2 < about 0.3), the period-weighted approach was most appropriate. The lowest errors in loads were achieved for solutes with the strongest concentration–discharge relations. Sample and regression model diagnostics could be used to approximate overall accuracies and annual precisions. For the period-weighed approach, errors were lower when the variance in concentrations was lower, the degree of autocorrelation in the concentrations was higher, and sampling frequency was higher. The period-weighted approach was most sensitive to sampling frequency. For the regression-model and composite methods, errors were lower when the variance in model residuals was lower. For the composite method, errors were lower when the autocorrelation in the residuals was higher. Guidelines to determine the best load estimation method based on solute concentration–discharge dynamics and diagnostics are presented, and should be applicable to other studies.

Analysis of the runoff generation mechanism for the investigation of the SCS-CN method applicability to a partial area experimental watershed

NASA Astrophysics Data System (ADS)

Soulis, K. X.; Valiantzas, J. D.; Dercas, N.; Londra, P. A.

2009-01-01

The Soil Conservation Service Curve Number (SCS-CN) method is widely used for predicting direct runoff volume for a given rainfall event. The applicability of the SCS-CN method and the runoff generation mechanism were thoroughly analysed in a Mediterranean experimental watershed in Greece. The region is characterized by a Mediterranean semi-arid climate. A detailed land cover and soil survey using remote sensing and GIS techniques, showed that the watershed is dominated by coarse soils with high hydraulic conductivities, whereas a smaller part is covered with medium textured soils and impervious surfaces. The analysis indicated that the SCS-CN method fails to predict runoff for the storm events studied, and that there is a strong correlation between the CN values obtained from measured runoff and the rainfall depth. The hypothesis that this correlation could be attributed to the existence of an impermeable part in a very permeable watershed was examined in depth, by developing a numerical simulation water flow model for predicting surface runoff generated from each of the three soil types of the watershed. Numerical runs were performed using the HYDRUS-1D code. The results support the validity of this hypothesis for most of the events examined where the linear runoff formula provides better results than the SCS-CN method. The runoff coefficient of this formula can be taken equal to the percentage of the impervious area. However, the linear formula should be applied with caution in case of extreme events with very high rainfall intensities. In this case, the medium textured soils may significantly contribute to the total runoff and the linear formula may significantly underestimate the runoff produced.

Investigation of the direct runoff generation mechanism for the analysis of the SCS-CN method applicability to a partial area experimental watershed

NASA Astrophysics Data System (ADS)

Soulis, K. X.; Valiantzas, J. D.; Dercas, N.; Londra, P. A.

2009-05-01

The Soil Conservation Service Curve Number (SCS-CN) method is widely used for predicting direct runoff volume for a given rainfall event. The applicability of the SCS-CN method and the direct runoff generation mechanism were thoroughly analysed in a Mediterranean experimental watershed in Greece. The region is characterized by a Mediterranean semi-arid climate. A detailed land cover and soil survey using remote sensing and GIS techniques, showed that the watershed is dominated by coarse soils with high hydraulic conductivities, whereas a smaller part is covered with medium textured soils and impervious surfaces. The analysis indicated that the SCS-CN method fails to predict runoff for the storm events studied, and that there is a strong correlation between the CN values obtained from measured runoff and the rainfall depth. The hypothesis that this correlation could be attributed to the existence of an impermeable part in a very permeable watershed was examined in depth, by developing a numerical simulation water flow model for predicting surface runoff generated from each of the three soil types of the watershed. Numerical runs were performed using the HYDRUS-1D code. The results support the validity of this hypothesis for most of the events examined where the linear runoff formula provides better results than the SCS-CN method. The runoff coefficient of this formula can be taken equal to the percentage of the impervious area. However, the linear formula should be applied with caution in case of extreme events with very high rainfall intensities. In this case, the medium textured soils may significantly contribute to the total runoff and the linear formula may significantly underestimate the runoff produced.

Watershed Management Tool for Selection and Spacial Allocation of Non-Point Source Pollution Control Practices

EPA Science Inventory

Distributed-parameter watershed models are often utilized for evaluating the effectiveness of sediment and nutrient abatement strategies through the traditional {calibrate→ validate→ predict} approach. The applicability of the method is limited due to modeling approximations. In ...

Flexible methods for segmentation evaluation: Results from CT-based luggage screening

PubMed Central

Karimi, Seemeen; Jiang, Xiaoqian; Cosman, Pamela; Martz, Harry

2017-01-01

BACKGROUND Imaging systems used in aviation security include segmentation algorithms in an automatic threat recognition pipeline. The segmentation algorithms evolve in response to emerging threats and changing performance requirements. Analysis of segmentation algorithms’ behavior, including the nature of errors and feature recovery, facilitates their development. However, evaluation methods from the literature provide limited characterization of the segmentation algorithms. OBJECTIVE To develop segmentation evaluation methods that measure systematic errors such as oversegmentation and undersegmentation, outliers, and overall errors. The methods must measure feature recovery and allow us to prioritize segments. METHODS We developed two complementary evaluation methods using statistical techniques and information theory. We also created a semi-automatic method to define ground truth from 3D images. We applied our methods to evaluate five segmentation algorithms developed for CT luggage screening. We validated our methods with synthetic problems and an observer evaluation. RESULTS Both methods selected the same best segmentation algorithm. Human evaluation confirmed the findings. The measurement of systematic errors and prioritization helped in understanding the behavior of each segmentation algorithm. CONCLUSIONS Our evaluation methods allow us to measure and explain the accuracy of segmentation algorithms. PMID:24699346

A proposed international watershed research network

USGS Publications Warehouse

Osterkamp, W.R.; Gray, J.R.

2003-01-01

An “International Watershed Research Network” is to be an initial project of the Sino-U. S. Centers for Soil and Water Conservation and Environmental Protection. The Network will provide a fundamental database for research personnel of the Centers, as well as of the global research community, and is viewed as an important resource for their successful operation. Efforts are under way to (a) identify and select candidate watersheds, (b) develop standards and protocols for data collection and dissemination, and (c) specify other data sources on erosion, sediment transport, hydrology, and ancillary information of probable interest and use to participants of the Centers. The initial focus of the Network will be on water-deficient areas. Candidate watersheds for the Network are yet to be determined although likely selections include the Ansai Research Station, northern China, and the Walnut Gulch Experimental Watershed, Arizona, USA. The Network is to be patterned after the Vigil Network, an open-ended group of global sites and small drainage basins for which Internet-accessible geomorphic, hydrologic, and biological data are periodically collected or updated. Some types of data, using similar instruments and observation methods, will be collected at all watersheds selected for the Network. Other data from the watersheds that may reflect individual watershed characteristics and research objectives will be collected as well.

Magnitude and frequency of flooding on small urban watersheds in the Tampa Bay area, west-central Florida

USGS Publications Warehouse

Lopez, M.A.; Woodham, W.M.

1983-01-01

Hydrologic data collected on nine small urban watersheds in the Tampa Bay area of west-central Florida and a method for estimating peak discharges in the study area are described. The watersheds have mixed land use and range in size from 0.34 to 3.45 square miles. Watershed soils, land use, and storm-drainage system data are described. Urban development ranged from a sparsely populated area with open-ditch storm sewers and 19% impervious area to a completely sewered watershed with 61% impervious cover. The U.S. Geological Survey natural-basin and urban-watershed models were calibrated for the nine watersheds using 5-minute interval rainfall data from the Tampa, Florida, National Weather Service rain gage to simulate annual peak discharge for the period 1906-52. A log-Pearson Type III frequency analysis of the simulated annual maximum discharge was used to determine the 2-, 5-, 10-, 25-, 50-, and 100-year flood discharges for each watershed. Flood discharges were related in a multiple-linear regression to drainage area, channel slope, detention storage area, and an urban-development factor determined by the extent of curb and gutter street drainage and storm-sewer system. The average standard error for the regional relations ranged from + or - 32 to + or - 42%. (USGS)

Classification of Maize and Weeds by Bayesian Networks

NASA Astrophysics Data System (ADS)

Chapron, Michel; Oprea, Alina; Sultana, Bogdan; Assemat, Louis

2007-11-01

Precision Agriculture is concerned with all sorts of within-field variability, spatially and temporally, that reduces the efficacy of agronomic practices applied in a uniform way all over the field. Because of these sources of heterogeneity, uniform management actions strongly reduce the efficiency of the resource input to the crop (i.e. fertilization, water) or for the agrochemicals use for pest control (i.e. herbicide). Moreover, this low efficacy means high environmental cost (pollution) and reduced economic return for the farmer. Weed plants are one of these sources of variability for the crop, as they occur in patches in the field. Detecting the location, size and internal density of these patches, along with identification of main weed species involved, open the way to a site-specific weed control strategy, where only patches of weeds would receive the appropriate herbicide (type and dose). Herein, an automatic recognition method of vegetal species is described. First, the pixels of soil and vegetation are classified in two classes, then the vegetation part of the input image is segmented from the distance image by using the watershed method and finally the leaves of the vegetation are partitioned in two parts maize and weeds thanks to the two Bayesian networks.

A Clustering Algorithm for Ecological Stream Segment Identification from Spatially Extensive Digital Databases

NASA Astrophysics Data System (ADS)

Brenden, T. O.; Clark, R. D.; Wiley, M. J.; Seelbach, P. W.; Wang, L.

2005-05-01

Remote sensing and geographic information systems have made it possible to attribute variables for streams at increasingly detailed resolutions (e.g., individual river reaches). Nevertheless, management decisions still must be made at large scales because land and stream managers typically lack sufficient resources to manage on an individual reach basis. Managers thus require a method for identifying stream management units that are ecologically similar and that can be expected to respond similarly to management decisions. We have developed a spatially-constrained clustering algorithm that can merge neighboring river reaches with similar ecological characteristics into larger management units. The clustering algorithm is based on the Cluster Affinity Search Technique (CAST), which was developed for clustering gene expression data. Inputs to the clustering algorithm are the neighbor relationships of the reaches that comprise the digital river network, the ecological attributes of the reaches, and an affinity value, which identifies the minimum similarity for merging river reaches. In this presentation, we describe the clustering algorithm in greater detail and contrast its use with other methods (expert opinion, classification approach, regular clustering) for identifying management units using several Michigan watersheds as a backdrop.

Application of the Ecosystem Diagnosis and Treatment Method to the Grande Ronde Model Watershed project : Final Report.

DOE Office of Scientific and Technical Information (OSTI.GOV)

Mobrand, Lars Erik; Lestelle, Lawrence C.

In the spring of 1994 a technical planning support project was initiated by the Grande Ronde Model Watershed Board of Directors (Board) with funding from the Bonneville Power Administration. The project was motivated by a need for a science based method for prioritizing restoration actions in the basin that would promote effectiveness and accountability. In this section the authors recall the premises for the project. The authors also present a set of recommendations for implementing a watershed planning process that incorporates a science-based framework to help guide decision making. This process is intended to assist the Grande Ronde Model Watershedmore » Board in its effort to plan and implement watershed improvement measures. The process would also assist the Board in coordinating its efforts with other entities in the region. The planning process is based on an approach for developing an ecosystem management strategy referred to as the Ecosystem Diagnosis and Treatment (EDT) method (Lichatowich et al. 1995, Lestelle et al. 1996). The process consists of an on-going planning cycle. Included in this cycle is an assessment of the ability of the watershed to support and sustain natural resources and other economic and societal values. This step in the process, which the authors refer to as the diagnosis, helps guide the development of actions (also referred to as treatments) aimed at improving the conditions of the watershed to achieve long-term objectives. The planning cycle calls for routinely reviewing and updating, as necessary, the basis for the diagnosis and other analyses used by the Board in adopting actions for implementation. The recommendations offered here address this critical need to habitually update the information used in setting priorities for action.« less

Feature detection on 3D images of dental imprints

NASA Astrophysics Data System (ADS)

Mokhtari, Marielle; Laurendeau, Denis

1994-09-01

A computer vision approach for the extraction of feature points on 3D images of dental imprints is presented. The position of feature points are needed for the measurement of a set of parameters for automatic diagnosis of malocclusion problems in orthodontics. The system for the acquisition of the 3D profile of the imprint, the procedure for the detection of the interstices between teeth, and the approach for the identification of the type of tooth are described, as well as the algorithm for the reconstruction of the surface of each type of tooth. A new approach for the detection of feature points, called the watershed algorithm, is described in detail. The algorithm is a two-stage procedure which tracks the position of local minima at four different scales and produces a final map of the position of the minima. Experimental results of the application of the watershed algorithm on actual 3D images of dental imprints are presented for molars, premolars and canines. The segmentation approach for the analysis of the shape of incisors is also described in detail.

Quantifying human disturbance in watersheds: Variable selection and performance of a GIS-based disturbance index for predicting the biological condition of perennial streams

USGS Publications Warehouse

Falcone, James A.; Carlisle, Daren M.; Weber, Lisa C.

2010-01-01

Characterizing the relative severity of human disturbance in watersheds is often part of stream assessments and is frequently done with the aid of Geographic Information System (GIS)-derived data. However, the choice of variables and how they are used to quantify disturbance are often subjective. In this study, we developed a number of disturbance indices by testing sets of variables, scoring methods, and weightings of 33 potential disturbance factors derived from readily available GIS data. The indices were calibrated using 770 watersheds located in the western United States for which the severity of disturbance had previously been classified from detailed local data by the United States Environmental Protection Agency (USEPA) Environmental Monitoring and Assessment Program (EMAP). The indices were calibrated by determining which variable or variable combinations and aggregation method best differentiated between least- and most-disturbed sites. Indices composed of several variables performed better than any individual variable, and best results came from a threshold method of scoring using six uncorrelated variables: housing unit density, road density, pesticide application, dam storage, land cover along a mainstem buffer, and distance to nearest canal/pipeline. The final index was validated with 192 withheld watersheds and correctly classified about two-thirds (68%) of least- and most-disturbed sites. These results provide information about the potential for using a disturbance index as a screening tool for a priori ranking of watersheds at a regional/national scale, and which landscape variables and methods of combination may be most helpful in doing so.

SCS-CN parameter determination using rainfall-runoff data in heterogeneous watersheds - the two-CN system approach

NASA Astrophysics Data System (ADS)

Soulis, K. X.; Valiantzas, J. D.

2012-03-01

The Soil Conservation Service Curve Number (SCS-CN) approach is widely used as a simple method for predicting direct runoff volume for a given rainfall event. The CN parameter values corresponding to various soil, land cover, and land management conditions can be selected from tables, but it is preferable to estimate the CN value from measured rainfall-runoff data if available. However, previous researchers indicated that the CN values calculated from measured rainfall-runoff data vary systematically with the rainfall depth. Hence, they suggested the determination of a single asymptotic CN value observed for very high rainfall depths to characterize the watersheds' runoff response. In this paper, the hypothesis that the observed correlation between the calculated CN value and the rainfall depth in a watershed reflects the effect of soils and land cover spatial variability on its hydrologic response is being tested. Based on this hypothesis, the simplified concept of a two-CN heterogeneous system is introduced to model the observed CN-rainfall variation by reducing the CN spatial variability into two classes. The behaviour of the CN-rainfall function produced by the simplified two-CN system is approached theoretically, it is analysed systematically, and it is found to be similar to the variation observed in natural watersheds. Synthetic data tests, natural watersheds examples, and detailed study of two natural experimental watersheds with known spatial heterogeneity characteristics were used to evaluate the method. The results indicate that the determination of CN values from rainfall runoff data using the proposed two-CN system approach provides reasonable accuracy and it over performs the previous methods based on the determination of a single asymptotic CN value. Although the suggested method increases the number of unknown parameters to three (instead of one), a clear physical reasoning for them is presented.

Investigation of use of space data in watershed hydrology

NASA Technical Reports Server (NTRS)

Blanchard, B. J. (Principal Investigator)

1975-01-01

The author has identified the following significant results. Digital data from the ERTS multispectral scanner were used to investigate the feasibility of identifying differences in watershed runoff capability with spaceborne sensors. Linear combinations of the two visible light bands and a combination of the four visible and near infrared bands were related to a coefficient used in the Soil Conservation Service storm runoff equation. Good relationships were found in two scenes, both with dry surface conditions, over the same watersheds. The relationships defined by both combinations of digital data were tested on a independent set of 10 watersheds and on an additional 22 subwatersheds. Coefficients predicted with the ERTS data proved better than coefficients developed with conventional methods.

Sustainable environmental flow management in an agricultural watershed in northeast Kansas

EPA Science Inventory

Background/Question/Methods The Delaware watershed, an area of land in northeast Kansas of over 1110 square miles, has degraded water quality due to intensive cultivation of crops and subsequent nutrient enrichment and erosion. The current conditions may be further aggravated by ...

Spatial and temporal variability in greenhouse gas abundance of urban streams: The role of urban infrastructure

EPA Science Inventory

Background/Question/MethodsStreams and rivers are significant sources of greenhouse gas emissions globally. Water quality and watershed management, are likely to influence GHG emissions regionally. In urban-impacted watersheds, increased nitrogen loading, organic matter, and war...

Effects of watershed management on sources and fluxes of water, carbon, and nitrogen in streams: Climate implications

EPA Science Inventory

Background/Question/Methods Due to the interactive effects of urbanization and climate variability, managing impacts on watershed hydrology and biogeochemical processing has become increasingly important, particularly due to the enhanced potential for eutrophication and hypoxia i...

Extension of the soil conservation service rainfall-runoff methodology for ungaged watersheds

DOT National Transportation Integrated Search

1981-07-01

The estimation of direct runoff for ungaged watersheds is a common problem in : engineering hydrology. The method of the Soil Conservation Services (SCS) is widely used due to its ease of application. Runoff estimates are based upon the soil types an...

DNA BASED MOLECULAR METHODS FOR BACTERIAL SOURCE TRACKING IN WATERSHEDS

EPA Science Inventory

Point and non-point pollution sources of fecal pollution on a watershed adversely impact the quality of drinking source waters and recreational waters. States are required to develop total maximum daily loads (TMDLs) and devise best management practices (BMPs) to reduce the po...

EPA'S URBAN RESEARCH PROGRAM IN BMPS AND RESTORATION FOR WATER QUALITY IMPROVEMENT

EPA Science Inventory

The Urban Watershed Management Branch is responsible for developing, and demonstrating technologies and methods required to manage the risk to public health, property and the environment from wet weather flows (WWF) in urban watersheds. The activities are primarily aimed at rest...

EPA'S URBAN RESEARCH PROGRAM IN BMPS AND RESTORATION FOR WATER QUALITY IMPROVEMENT

EPA Science Inventory

The Urban Watershed Management Branch is responsible for developing, and demonstrating technologies and methods required to managing the risk to public health, property and the environment from wet weather flows (WWF) in urban watersheds. The activities are primarily aimed at re...

A study of remote sensing as applied to regional and small watersheds. Volume 2: Supporting technical details. [using computerized simulation models

NASA Technical Reports Server (NTRS)

1974-01-01

The Stanford Watershed Model, the Kentucky Watershed Model and OPSET program, and the NASA-IBM system for simulation and analysis of watersheds are described in terms of their applications to the study of remote sensing of water resources. Specific calibration processes and input and output parameters that are instrumental in the simulations are explained for the following kinds of data: (1) hourly precipitation data; (2) daily discharge data; (3) flood hydrographs; (4) temperature and evaporation data; and (5) snowmelt data arrays. The Sensitivity Analysis Task, which provides a method for evaluation of any of the separate simulation runs in the form of performance indices, is also reported. The method is defined and a summary of results is given which indicates the values obtained in the simulation runs performed for Town Creek, Alabama; Alamosa Creek, Colorado; and Pearl River, Louisiana. The results are shown in tabular and plot graph form. For Vol. 1, see N74-27813.

Assessing the Influence of Copper-Nickel-Bearing Bedrock on Baseline Water Quality in Filson Creek Watershed, Northeast Minnesota

NASA Astrophysics Data System (ADS)

Runkel, R. L.; Jones, P. M.; Elliott, S. M.; Woodruff, L. G.

2017-12-01

Mining sulfide-bearing copper (Cu), nickel (Ni), and platinum-group-elements (PGE) deposits in the Duluth Complex of northeast Minnesota could have detrimental effects on surrounding water resources and associated ecosystems. A study was conducted to 1) assess copper, nickel, and other metal concentrations in surface water, bedrock, streambed sediments, and soils in watersheds where the basal part of the Duluth Complex is exposed or near the land surface; and 2) determine if these concentrations, and metal-bearing deposits, are currently influencing regional water quality in areas of potential base-metal mining. One of the watersheds that was assessed was the Filson Creek watershed, where shallow Cu-Ni-PGE deposits are present. Field water-quality, streambed sediments, soils, bedrock, and streamflow data set were collected in Filson Creek and it's watershed in 2014 and 2015. Surface-water samples were analyzed for 12 trace metals (dissolved and total concentrations), 14 inorganic constituents (dissolved concentrations), alkalinity, 18 O /16O and 2H/1H isotopes, and total and dissolved organic carbon. Background total Cu and Ni concentrations in the creek in 2014 and 2015 ranged from 1.2 to 10.8 micrograms per liter (µg/L), and 1.7 to 8.4 µg/L, respectively. The concentrations of copper, nickel, and other trace metals in surface waters and streambed sediments reflects the geochemistry of underlying rock types and glacially transported unconsolidated material, establishing baseline conditions prior to any mining. Dissolved and total organic carbon (DOC and TOC) concentrations in surface waters are very high compared to most surface waters in Minnesota, ranging from 21.3 to 43.2 milligrams per liter (mg/L), and 22.4 and 53.5 mg/L. Synoptic water-quality and flow data from a tracer test conducted over a stream segment of Filson Creek above a shallow Cu-Ni-PGE deposit (Spruce Road Deposit) was used with the 2014-15 water-quality and synthetic flow data to calibrate the reactive transport model. Results from transport modeling suggest that the high DOC content exert control on copper and other trace metal transport.

Morphotectonic Index Analysis as an Indicator of Neotectonic Segmentation of the Nicoya Peninsula, Costa Rica

NASA Astrophysics Data System (ADS)

Morrish, S.; Marshall, J. S.

2013-12-01

The Nicoya Peninsula lies within the Costa Rican forearc where the Cocos plate subducts under the Caribbean plate at ~8.5 cm/yr. Rapid plate convergence produces frequent large earthquakes (~50yr recurrence interval) and pronounced crustal deformation (0.1-2.0m/ky uplift). Seven uplifted segments have been identified in previous studies using broad geomorphic surfaces (Hare & Gardner 1984) and late Quaternary marine terraces (Marshall et al. 2010). These surfaces suggest long term net uplift and segmentation of the peninsula in response to contrasting domains of subducting seafloor (EPR, CNS-1, CNS-2). In this study, newer 10m contour digital topographic data (CENIGA- Terra Project) will be used to characterize and delineate this segmentation using morphotectonic analysis of drainage basins and correlation of fluvial terrace/ geomorphic surface elevations. The peninsula has six primary watersheds which drain into the Pacific Ocean; the Río Andamojo, Río Tabaco, Río Nosara, Río Ora, Río Bongo, and Río Ario which range in area from 200 km2 to 350 km2. The trunk rivers follow major lineaments that define morphotectonic segment boundaries and in turn their drainage basins are bisected by them. Morphometric analysis of the lower (1st and 2nd) order drainage basins will provide insight into segmented tectonic uplift and deformation by comparing values of drainage basin asymmetry, stream length gradient, and hypsometry with respect to margin segmentation and subducting seafloor domain. A general geomorphic analysis will be conducted alongside the morphometric analysis to map previously recognized (Morrish et al. 2010) but poorly characterized late Quaternary fluvial terraces. Stream capture and drainage divide migration are common processes throughout the peninsula in response to the ongoing deformation. Identification and characterization of basin piracy throughout the peninsula will provide insight into the history of landscape evolution in response to differential uplift. Conducting this morphotectonic analysis of the Nicoya Peninsula will provide further constraints on rates of segment uplift, location of segment boundaries, and advance the understanding of the long term deformation of the region in relation to subduction.

Forecasting the remaining reservoir capacity in the Laurentian Great Lakes watershed

NASA Astrophysics Data System (ADS)

Alighalehbabakhani, Fatemeh; Miller, Carol J.; Baskaran, Mark; Selegean, James P.; Barkach, John H.; Dahl, Travis; Abkenar, Seyed Mohsen Sadatiyan

2017-12-01

Sediment accumulation behind a dam is a significant factor in reservoir operation and watershed management. There are many dams located within the Laurentian Great Lakes watershed whose operations have been adversely affected by excessive reservoir sedimentation. Reservoir sedimentation effects include reduction of flood control capability and limitations to both water supply withdrawals and power generation due to reduced reservoir storage. In this research, the sediment accumulation rates of twelve reservoirs within the Great Lakes watershed were evaluated using the Soil and Water Assessment Tool (SWAT). The estimated sediment accumulation rates by SWAT were compared to estimates relying on radionuclide dating of sediment cores and bathymetric survey methods. Based on the sediment accumulation rate, the remaining reservoir capacity for each study site was estimated. Evaluation of the anthropogenic impacts including land use change and dam construction on the sediment yield were assessed in this research. The regression analysis was done on the current and pre-European settlement sediment yield for the modeled watersheds to predict the current and natural sediment yield in un-modeled watersheds. These eleven watersheds are in the state of Indiana, Michigan, Ohio, New York, and Wisconsin.

Summary of the land-use inventory for the nonpoint-source evaluation monitoring watersheds in Wisconsin

USGS Publications Warehouse

Wierl, J.A.; Rappold, K.F.; Amerson, F.U.

1996-01-01

In 1992, the Wisconsin Department of Natural Resources (WDNR) in cooperation with the U.S. Geological Survey initiated a land-use inventory to identify sources of pollutants and track the land-management changes for eight evaluation monitoring watersheds established as part of the WDNR's Nonpoint Source Program. Each evaluation monitoring watershed is within a WDNR priority watershed. The U.S. Geological Survey is responsible for collection of water-quality data in the evaluation monitoring watersheds. An initial inventory was completed for each of the WDNR priority watersheds before nonpoint-source plans were developed for the control of nonpoint pollution. The land-use inventory described in this report expands upon the initial inventory by including nonpoint pollution sources that were not identified and also by updating changes in landuse and land-management practices. New sources of nonpoint pollution, not identified in the initial inventory, could prove to be important when monitored and modeled data are analyzed. This effort to inventory the evaluation monitoring watersheds will help with the interpretation of future land-use and water-quality data. This report describes landuse inventory methods, presents results of the inventory, and lists proposed future activities.

Hydrologic Effects of Brush Management in Central Texas

NASA Astrophysics Data System (ADS)

Banta, J. R.; Slattery, R.

2011-12-01

Encroachment of woody vegetation into traditional savanna grassland ecosystems in central Texas has largely been attributed to land use practices of settlers, most notably overgrazing and fire suppression. Implementing brush management practices (removing the woody vegetation and allowing native grasses to reestablish in the area), could potentially change the hydrology in a watershed. The U.S. Geological Survey, in cooperation with several local, State, and Federal cooperators, studied the hydrologic effects of ashe juniper (Juniperus ashei) removal as a brush management conservation practice in the Honey Creek State Natural Area in Comal County, Tex. Two adjacent watersheds of 104 and 159 hectares were used in a paired study. Rainfall, streamflow, evapotranspiration (Bowen ratio method), and water quality data were collected in both watersheds. Using a hydrologic mass balance approach, rainfall was allocated to surface-water runoff, evapotranspiration, and groundwater recharge. Groundwater recharge was not directly measured, but estimated as the residual of the hydrologic mass balance. After hydrologic data were collected in both watersheds for 3 years, approximately 80 percent of the woody vegetation (ashe juniper) was selectively removed from the 159 hectare watershed (treatment watershed). Brush management was not implemented in the other (reference) watershed. Hydrologic data were collected in both watersheds for six years after brush management implementation. The resulting data were examined for differences in the hydrologic budget between the reference and treatment watersheds as well as between pre- and post-brush management periods to assess effects of the treatment. Preliminary results indicate there are differences in the hydrologic budget as well as water quality between the watersheds during pre- and post-treatment periods.

A mathematical analysis to address the 6 degree-of-freedom segmental power imbalance.

PubMed

Ebrahimi, Anahid; Collins, John D; Kepple, Thomas M; Takahashi, Kota Z; Higginson, Jill S; Stanhope, Steven J

2018-01-03

Segmental power is used in human movement analyses to indicate the source and net rate of energy transfer between the rigid bodies of biomechanical models. Segmental power calculations are performed using segment endpoint dynamics (kinetic method). A theoretically equivalent method is to measure the rate of change in a segment's mechanical energy state (kinematic method). However, these two methods have not produced experimentally equivalent results for segments proximal to the foot, with the difference in methods deemed the "power imbalance." In a 6 degree-of-freedom model, segments move independently, resulting in relative segment endpoint displacement and non-equivalent segment endpoint velocities at a joint. In the kinetic method, a segment's distal end translational velocity may be defined either at the anatomical end of the segment or at the location of the joint center (defined here as the proximal end of the adjacent distal segment). Our mathematical derivations revealed the power imbalance between the kinetic method using the anatomical definition and the kinematic method can be explained by power due to relative segment endpoint displacement. In this study, we tested this analytical prediction through experimental gait data from nine healthy subjects walking at a typical speed. The average absolute segmental power imbalance was reduced from 0.023 to 0.046 W/kg using the anatomical definition to ≤0.001 W/kg using the joint center definition in the kinetic method (95.56-98.39% reduction). Power due to relative segment endpoint displacement in segmental power analyses is substantial and should be considered in analyzing energetic flow into and between segments. Copyright © 2017 Elsevier Ltd. All rights reserved.

From Phenomena to Objects: Segmentation of Fuzzy Objects and its Application to Oceanic Eddies

NASA Astrophysics Data System (ADS)

Wu, Qingling

A challenging image analysis problem that has received limited attention to date is the isolation of fuzzy objects---i.e. those with inherently indeterminate boundaries---from continuous field data. This dissertation seeks to bridge the gap between, on the one hand, the recognized need for Object-Based Image Analysis of fuzzy remotely sensed features, and on the other, the optimization of existing image segmentation techniques for the extraction of more discretely bounded features. Using mesoscale oceanic eddies as a case study of a fuzzy object class evident in Sea Surface Height Anomaly (SSHA) imagery, the dissertation demonstrates firstly, that the widely used region-growing and watershed segmentation techniques can be optimized and made comparable in the absence of ground truth data using the principle of parsimony. However, they both have significant shortcomings, with the region growing procedure creating contour polygons that do not follow the shape of eddies while the watershed technique frequently subdivides eddies or groups together separate eddy objects. Secondly, it was determined that these problems can be remedied by using a novel Non-Euclidian Voronoi (NEV) tessellation technique. NEV is effective in isolating the extrema associated with eddies in SSHA data while using a non-Euclidian cost-distance based procedure (based on cumulative gradients in ocean height) to define the boundaries between fuzzy objects. Using this procedure as the first stage in isolating candidate eddy objects, a novel "region-shrinking" multicriteria eddy identification algorithm was developed that includes consideration of shape and vorticity. Eddies identified by this region-shrinking technique compare favorably with those identified by existing techniques, while simplifying and improving existing automated eddy detection algorithms. However, it also tends to find a larger number of eddies as a result of its ability to separate what other techniques identify as connected eddies. The research presented here is of significance not only to eddy research in oceanography, but also to other areas of Earth System Science for which the automated detection of features lacking rigid boundary definitions is of importance.

Restoring Anadromous Fish Habitat in Big Canyon Creek Watershed, 2004-2005 Annual Report.

DOE Office of Scientific and Technical Information (OSTI.GOV)

Rasmussen, Lynn

2006-07-01

The ''Restoring Anadromous Fish Habitat in the Big Canyon Creek Watershed'' is a multi-phase project to enhance steelhead trout in the Big Canyon Creek watershed by improving salmonid spawning and rearing habitat. Habitat is limited by extreme high runoff events, low summer flows, high water temperatures, poor instream cover, spawning gravel siltation, and sediment, nutrient and bacteria loading. Funded by the Bonneville Power Administration (BPA) as part of the Northwest Power Planning Council's Fish and Wildlife Program, the project assists in mitigating damage to steelhead runs caused by the Columbia River hydroelectric dams. The project is sponsored by the Nezmore » Perce Soil and Water Conservation District. Target fish species include steelhead trout (Oncorhynchus mykiss). Steelhead trout within the Snake River Basin were listed in 1997 as threatened under the Endangered Species Act. Accomplishments for the contract period September 1, 2004 through October 31, 2005 include; 2.7 riparian miles treated, 3.0 wetland acres treated, 5,263.3 upland acres treated, 106.5 riparian acres treated, 76,285 general public reached, 3,000 students reached, 40 teachers reached, 18 maintenance plans completed, temperature data collected at 6 sites, 8 landowner applications received and processed, 14 land inventories completed, 58 habitat improvement project designs completed, 5 newsletters published, 6 habitat plans completed, 34 projects installed, 2 educational workshops, 6 displays, 1 television segment, 2 public service announcements, a noxious weed GIS coverage, and completion of NEPA, ESA, and cultural resources requirements.« less

[Review on HSPF model for simulation of hydrology and water quality processes].

PubMed

Li, Zhao-fu; Liu, Hong-Yu; Li, Yan

2012-07-01

Hydrological Simulation Program-FORTRAN (HSPF), written in FORTRAN, is one ol the best semi-distributed hydrology and water quality models, which was first developed based on the Stanford Watershed Model. Many studies on HSPF model application were conducted. It can represent the contributions of sediment, nutrients, pesticides, conservatives and fecal coliforms from agricultural areas, continuously simulate water quantity and quality processes, as well as the effects of climate change and land use change on water quantity and quality. HSPF consists of three basic application components: PERLND (Pervious Land Segment) IMPLND (Impervious Land Segment), and RCHRES (free-flowing reach or mixed reservoirs). In general, HSPF has extensive application in the modeling of hydrology or water quality processes and the analysis of climate change and land use change. However, it has limited use in China. The main problems with HSPF include: (1) some algorithms and procedures still need to revise, (2) due to the high standard for input data, the accuracy of the model is limited by spatial and attribute data, (3) the model is only applicable for the simulation of well-mixed rivers, reservoirs and one-dimensional water bodies, it must be integrated with other models to solve more complex problems. At present, studies on HSPF model development are still undergoing, such as revision of model platform, extension of model function, method development for model calibration, and analysis of parameter sensitivity. With the accumulation of basic data and imorovement of data sharing, the HSPF model will be applied more extensively in China.

Improved Estimation of Cardiac Function Parameters Using a Combination of Independent Automated Segmentation Results in Cardiovascular Magnetic Resonance Imaging.

PubMed

Lebenberg, Jessica; Lalande, Alain; Clarysse, Patrick; Buvat, Irene; Casta, Christopher; Cochet, Alexandre; Constantinidès, Constantin; Cousty, Jean; de Cesare, Alain; Jehan-Besson, Stephanie; Lefort, Muriel; Najman, Laurent; Roullot, Elodie; Sarry, Laurent; Tilmant, Christophe; Frouin, Frederique; Garreau, Mireille

2015-01-01

This work aimed at combining different segmentation approaches to produce a robust and accurate segmentation result. Three to five segmentation results of the left ventricle were combined using the STAPLE algorithm and the reliability of the resulting segmentation was evaluated in comparison with the result of each individual segmentation method. This comparison was performed using a supervised approach based on a reference method. Then, we used an unsupervised statistical evaluation, the extended Regression Without Truth (eRWT) that ranks different methods according to their accuracy in estimating a specific biomarker in a population. The segmentation accuracy was evaluated by estimating six cardiac function parameters resulting from the left ventricle contour delineation using a public cardiac cine MRI database. Eight different segmentation methods, including three expert delineations and five automated methods, were considered, and sixteen combinations of the automated methods using STAPLE were investigated. The supervised and unsupervised evaluations demonstrated that in most cases, STAPLE results provided better estimates than individual automated segmentation methods. Overall, combining different automated segmentation methods improved the reliability of the segmentation result compared to that obtained using an individual method and could achieve the accuracy of an expert.

Improved Estimation of Cardiac Function Parameters Using a Combination of Independent Automated Segmentation Results in Cardiovascular Magnetic Resonance Imaging

PubMed Central

Lebenberg, Jessica; Lalande, Alain; Clarysse, Patrick; Buvat, Irene; Casta, Christopher; Cochet, Alexandre; Constantinidès, Constantin; Cousty, Jean; de Cesare, Alain; Jehan-Besson, Stephanie; Lefort, Muriel; Najman, Laurent; Roullot, Elodie; Sarry, Laurent; Tilmant, Christophe

2015-01-01

This work aimed at combining different segmentation approaches to produce a robust and accurate segmentation result. Three to five segmentation results of the left ventricle were combined using the STAPLE algorithm and the reliability of the resulting segmentation was evaluated in comparison with the result of each individual segmentation method. This comparison was performed using a supervised approach based on a reference method. Then, we used an unsupervised statistical evaluation, the extended Regression Without Truth (eRWT) that ranks different methods according to their accuracy in estimating a specific biomarker in a population. The segmentation accuracy was evaluated by estimating six cardiac function parameters resulting from the left ventricle contour delineation using a public cardiac cine MRI database. Eight different segmentation methods, including three expert delineations and five automated methods, were considered, and sixteen combinations of the automated methods using STAPLE were investigated. The supervised and unsupervised evaluations demonstrated that in most cases, STAPLE results provided better estimates than individual automated segmentation methods. Overall, combining different automated segmentation methods improved the reliability of the segmentation result compared to that obtained using an individual method and could achieve the accuracy of an expert. PMID:26287691

SCS-CN based time-distributed sediment yield model

NASA Astrophysics Data System (ADS)

Tyagi, J. V.; Mishra, S. K.; Singh, Ranvir; Singh, V. P.

2008-05-01

SummaryA sediment yield model is developed to estimate the temporal rates of sediment yield from rainfall events on natural watersheds. The model utilizes the SCS-CN based infiltration model for computation of rainfall-excess rate, and the SCS-CN-inspired proportionality concept for computation of sediment-excess. For computation of sedimentographs, the sediment-excess is routed to the watershed outlet using a single linear reservoir technique. Analytical development of the model shows the ratio of the potential maximum erosion (A) to the potential maximum retention (S) of the SCS-CN method is constant for a watershed. The model is calibrated and validated on a number of events using the data of seven watersheds from India and the USA. Representative values of the A/S ratio computed for the watersheds from calibration are used for the validation of the model. The encouraging results of the proposed simple four parameter model exhibit its potential in field application.

Programs for Watershed-Plus phase for rainfed regions in India

NASA Astrophysics Data System (ADS)

Ramachandran, Kausalya; Ramakrishna, Y. S.

2006-12-01

Watershed-based development is the strategy for sustainable growth in the vast rain-fed regions of India since 1980s to enhance agricultural production, conservation of natural resources and raising rural livelihood of farming communities. Although soil and water conservation was initially the primary objective of watershed program that saw large public investment since inception, later its focus shifted to principles of equity and enhancing rural livelihood opportunities and more recently to sustainable development since mid-1990s. At present a major emphasis under watershed program is the regeneration of degraded fragile lands in rain-fed regions. Several noteworthy watershed programs have been carried out since inception that have yielded sterling results while many others have yielded little by way of unbalanced development because of improper characterization of watersheds and poor project planning and implementation. Tools of Geomatics like satellite data, GIS and GPS besides conventional ones like field survey, topographical and cadastral maps along with traditional multi-disciplinary methods like PRA, soil and water analysis, socio-economic survey etc. provide insight into characterization of watersheds, project formulation and proper implementation of such development programs. The present paper illustrates the methodology for characterization of watersheds using the tools of Geomatics on one hand, besides exhibiting its utility for scaling-out the program benefits like sustaining higher agricultural productivity, enhancing irrigation efficiency, equity, enhanced rural livelihood opportunities, women empowerment, drought-proofing etc. during Watershed-Plus phase in the coming decades, on the other.

Using geophysical images of a watershed subsurface to predict soil textural properties

USDA-ARS?s Scientific Manuscript database

Subsurface architecture, in particular changes in soil type across the landscape, is an important control on the hydrological and ecological function of a watershed. Traditional methods of mapping soils involving subjective assignment of soil boundaries are inadequate for studies requiring a quantit...

RISK MANAGEMENT OF SEDIMENT STRESS: A FRAMEWORK FOR SEDIMENT RISK MANAGEMENT RESEARCH

EPA Science Inventory

Research related to the ecological risk management of sediment stress in watersheds is placed under a common conceptual framework in order to help promote the timely advance of decision support methods for aquatic resource managers and watershed-level planning. The proposed risk ...

ENHANCED RECOVERY METHODS FOR 85KR AGE-DATING GROUNDWATER: ROYAL WATERSHED, MAINE

EPA Science Inventory

Potential widespread use of ⁸⁵Kr, having a constant input function in the northern hemisphere, for groundwater age-dating would advance watershed investigations. The current input function of tritium is not sufficient to estimate young modern recharge waters. While tri...

Development and Adoption of a Watershed Approach to Compensatory Mitigation: Experiences in Colorado and California

EPA Science Inventory

In this article, we examine the adoption of the watershed approach and its technical methods into regulatory programs in Colorado and California. Specific steps and motives for the adoption are explained. Through close collaboration, regulators have systematically been made aware...

The Great Lakes Hydrography Dataset: Consistent, binational watersheds for the Laurentian Great Lakes Basin

EPA Science Inventory

Ecosystem-based management of the Laurentian Great Lakes, which spans both the United States and Canada, is hampered by the lack of consistent binational watersheds for the entire Basin. Using comparable data sources and consistent methods we developed spatially equivalent waters...

SENSITIVITY ANALYSIS OF THE APPLICATION OF CHEMICAL EXPOSURE CRITERIA FOR COMPARING SITES AND WATERSHEDS

EPA Science Inventory

A methodology was developed for deriving quantitative exposure criteria useful for comparing a site or watershed to a reference condition. The prototype method used indicators of exposures to oil contamination and combustion by-products, naphthalene and benzo(a)pyrene metabolites...

Uncertainty in BMP evaluation and optimization for watershed management

NASA Astrophysics Data System (ADS)

Chaubey, I.; Cibin, R.; Sudheer, K.; Her, Y.

2012-12-01

Use of computer simulation models have increased substantially to make watershed management decisions and to develop strategies for water quality improvements. These models are often used to evaluate potential benefits of various best management practices (BMPs) for reducing losses of pollutants from sources areas into receiving waterbodies. Similarly, use of simulation models in optimizing selection and placement of best management practices under single (maximization of crop production or minimization of pollutant transport) and multiple objective functions has increased recently. One of the limitations of the currently available assessment and optimization approaches is that the BMP strategies are considered deterministic. Uncertainties in input data (e.g. precipitation, streamflow, sediment, nutrient and pesticide losses measured, land use) and model parameters may result in considerable uncertainty in watershed response under various BMP options. We have developed and evaluated options to include uncertainty in BMP evaluation and optimization for watershed management. We have also applied these methods to evaluate uncertainty in ecosystem services from mixed land use watersheds. In this presentation, we will discuss methods to to quantify uncertainties in BMP assessment and optimization solutions due to uncertainties in model inputs and parameters. We have used a watershed model (Soil and Water Assessment Tool or SWAT) to simulate the hydrology and water quality in mixed land use watershed located in Midwest USA. The SWAT model was also used to represent various BMPs in the watershed needed to improve water quality. SWAT model parameters, land use change parameters, and climate change parameters were considered uncertain. It was observed that model parameters, land use and climate changes resulted in considerable uncertainties in BMP performance in reducing P, N, and sediment loads. In addition, climate change scenarios also affected uncertainties in SWAT simulated crop yields. Considerable uncertainties in the net cost and the water quality improvements resulted due to uncertainties in land use, climate change, and model parameter values.

Channel unit use by Smallmouth Bass: Do land-use constraints or quantity of habitat matter?

USGS Publications Warehouse

Brewer, Shannon K.

2013-01-01

I examined how land use influenced the distribution of Smallmouth Bass Micropterus dolomieu in channel units (discrete morphological features—e.g., pools) of streams in the Midwestern USA. Stream segments (n = 36), from four clusters of different soil and runoff conditions, were identified that had the highest percent of forest (n = 12), pasture (n = 12), and urban land use (n = 12) within each cluster. Channel units within each stream were delineated and independently sampled once using multiple gears in summer 2006. Data were analyzed using a generalized linear mixed model procedure with a binomial distribution and odds ratio statistics. Land use and channel unit were strong predictors of age-0, age-1, and age->1 Smallmouth Bass presence. Each age-class was more likely to be present in streams within watersheds dominated by forest land use than in those with pasture or urban land uses. The interaction between land use and channel unit was not significant in any of the models, indicating channel unit use by Smallmouth Bass did not depend on watershed land use. Each of the three age-classes was more likely to use pools than other channel units. However, streams with high densities of Smallmouth Bass age >1 had lower proportions of pools suggesting a variety of channel units is important even though habitat needs exist at the channel-unit scale. Management may benefit from future research addressing the significance of channel-unit quality as a possible mechanism for how land use impacts Smallmouth Bass populations. Further, management efforts aimed at improving stream habitat would likely be more beneficial if focused at the stream segment or landscape scale, where a variety of quality habitats might be supported.

Detection and segmentation of multiple touching product inspection items

NASA Astrophysics Data System (ADS)

Casasent, David P.; Talukder, Ashit; Cox, Westley; Chang, Hsuan-Ting; Weber, David

1996-12-01

X-ray images of pistachio nuts on conveyor trays for product inspection are considered. The first step in such a processor is to locate each individual item and place it in a separate file for input to a classifier to determine the quality of each nut. This paper considers new techniques to: detect each item (each nut can be in any orientation, we employ new rotation-invariant filters to locate each item independent of its orientation), produce separate image files for each item [a new blob coloring algorithm provides this for isolated (non-touching) input items], segmentation to provide separate image files for touching or overlapping input items (we use a morphological watershed transform to achieve this), and morphological processing to remove the shell and produce an image of only the nutmeat. Each of these operations and algorithms are detailed and quantitative data for each are presented for the x-ray image nut inspection problem noted. These techniques are of general use in many different product inspection problems in agriculture and other areas.

An experimental method to verify soil conservation by check dams on the Loess Plateau, China.

PubMed

Xu, X Z; Zhang, H W; Wang, G Q; Chen, S C; Dang, W Q

2009-12-01

A successful experiment with a physical model requires necessary conditions of similarity. This study presents an experimental method with a semi-scale physical model. The model is used to monitor and verify soil conservation by check dams in a small watershed on the Loess Plateau of China. During experiments, the model-prototype ratio of geomorphic variables was kept constant under each rainfall event. Consequently, experimental data are available for verification of soil erosion processes in the field and for predicting soil loss in a model watershed with check dams. Thus, it can predict the amount of soil loss in a catchment. This study also mentions four criteria: similarities of watershed geometry, grain size and bare land, Froude number (Fr) for rainfall event, and soil erosion in downscaled models. The efficacy of the proposed method was confirmed using these criteria in two different downscaled model experiments. The B-Model, a large scale model, simulates watershed prototype. The two small scale models, D(a) and D(b), have different erosion rates, but are the same size. These two models simulate hydraulic processes in the B-Model. Experiment results show that while soil loss in the small scale models was converted by multiplying the soil loss scale number, it was very close to that of the B-Model. Obviously, with a semi-scale physical model, experiments are available to verify and predict soil loss in a small watershed area with check dam system on the Loess Plateau, China.

The hydrologic implications of alternative prioritizations of landscape-scale geographically isolated wetlands conservation

NASA Astrophysics Data System (ADS)

Evenson, G. R.; Golden, H. E.; Lane, C.; Mclaughlin, D. L.; D'Amico, E.

2016-12-01

Geographically isolated wetlands (GIWs), defined as upland embedded wetlands, provide an array of ecosystem goods and services. Wetland conservation efforts aim to protect GIWs in the face of continued threats from anthropogenic activities. Given limited conservation resources, there is a critical need for methods capable of evaluating the watershed-scale hydrologic implications of alternative approaches to GIW conservation. Further, there is a need for methods that quantify the watershed-scale aggregate effects of GIWs to determine their regulatory status within the United States. We applied the Soil and Water Assessment Tool (SWAT), a popular watershed-scale hydrologic model, to represent the 1,700 km2 Pipestem Creek watershed in North Dakota, USA. We modified the model to incorporate an improved representation of GIW hydrologic processes via hydrologic response unit (HRU) redefinition and modifications to the model source code. We then used the model to evaluate the hydrologic effects of alternative approaches to GIW conservation prioritization by simulating the destruction/removal of GIWs by sub-classes defined by their relative position within the simulated fill-spill GIW network and their surface area characteristics. We evaluated the alternative conservation approaches as impacting (1) simulated streamflow at the Pipestem Creek watershed outlet; (2) simulated water-levels within the GIWs; and (3) simulated hydrologic connections between the GIWs. Our approach to modifying SWAT and evaluating alternative GIW conservation strategies may be replicated in different watersheds and physiographic regions to aid the development of GIW conservation priorities.

Breast mass segmentation in mammography using plane fitting and dynamic programming.

PubMed

Song, Enmin; Jiang, Luan; Jin, Renchao; Zhang, Lin; Yuan, Yuan; Li, Qiang

2009-07-01

Segmentation is an important and challenging task in a computer-aided diagnosis (CAD) system. Accurate segmentation could improve the accuracy in lesion detection and characterization. The objective of this study is to develop and test a new segmentation method that aims at improving the performance level of breast mass segmentation in mammography, which could be used to provide accurate features for classification. This automated segmentation method consists of two main steps and combines the edge gradient, the pixel intensity, as well as the shape characteristics of the lesions to achieve good segmentation results. First, a plane fitting method was applied to a background-trend corrected region-of-interest (ROI) of a mass to obtain the edge candidate points. Second, dynamic programming technique was used to find the "optimal" contour of the mass from the edge candidate points. Area-based similarity measures based on the radiologist's manually marked annotation and the segmented region were employed as criteria to evaluate the performance level of the segmentation method. With the evaluation criteria, the new method was compared with 1) the dynamic programming method developed by Timp and Karssemeijer, and 2) the normalized cut segmentation method, based on 337 ROIs extracted from a publicly available image database. The experimental results indicate that our segmentation method can achieve a higher performance level than the other two methods, and the improvements in segmentation performance level were statistically significant. For instance, the mean overlap percentage for the new algorithm was 0.71, whereas those for Timp's dynamic programming method and the normalized cut segmentation method were 0.63 (P < .001) and 0.61 (P < .001), respectively. We developed a new segmentation method by use of plane fitting and dynamic programming, which achieved a relatively high performance level. The new segmentation method would be useful for improving the accuracy of computerized detection and classification of breast cancer in mammography.

Analysis of sensitivity of simulated recharge to selected parameters for seven watersheds modeled using the precipitation-runoff modeling system

USGS Publications Warehouse

Ely, D. Matthew

2006-01-01

Recharge is a vital component of the ground-water budget and methods for estimating it range from extremely complex to relatively simple. The most commonly used techniques, however, are limited by the scale of application. One method that can be used to estimate ground-water recharge includes process-based models that compute distributed water budgets on a watershed scale. These models should be evaluated to determine which model parameters are the dominant controls in determining ground-water recharge. Seven existing watershed models from different humid regions of the United States were chosen to analyze the sensitivity of simulated recharge to model parameters. Parameter sensitivities were determined using a nonlinear regression computer program to generate a suite of diagnostic statistics. The statistics identify model parameters that have the greatest effect on simulated ground-water recharge and that compare and contrast the hydrologic system responses to those parameters. Simulated recharge in the Lost River and Big Creek watersheds in Washington State was sensitive to small changes in air temperature. The Hamden watershed model in west-central Minnesota was developed to investigate the relations that wetlands and other landscape features have with runoff processes. Excess soil moisture in the Hamden watershed simulation was preferentially routed to wetlands, instead of to the ground-water system, resulting in little sensitivity of any parameters to recharge. Simulated recharge in the North Fork Pheasant Branch watershed, Wisconsin, demonstrated the greatest sensitivity to parameters related to evapotranspiration. Three watersheds were simulated as part of the Model Parameter Estimation Experiment (MOPEX). Parameter sensitivities for the MOPEX watersheds, Amite River, Louisiana and Mississippi, English River, Iowa, and South Branch Potomac River, West Virginia, were similar and most sensitive to small changes in air temperature and a user-defined flow routing parameter. Although the primary objective of this study was to identify, by geographic region, the importance of the parameter value to the simulation of ground-water recharge, the secondary objectives proved valuable for future modeling efforts. The value of a rigorous sensitivity analysis can (1) make the calibration process more efficient, (2) guide additional data collection, (3) identify model limitations, and (4) explain simulated results.

Automatic segmentation of fluorescence lifetime microscopy images of cells using multiresolution community detection--a first study.

PubMed

Hu, D; Sarder, P; Ronhovde, P; Orthaus, S; Achilefu, S; Nussinov, Z

2014-01-01

Inspired by a multiresolution community detection based network segmentation method, we suggest an automatic method for segmenting fluorescence lifetime (FLT) imaging microscopy (FLIM) images of cells in a first pilot investigation on two selected images. The image processing problem is framed as identifying segments with respective average FLTs against the background in FLIM images. The proposed method segments a FLIM image for a given resolution of the network defined using image pixels as the nodes and similarity between the FLTs of the pixels as the edges. In the resulting segmentation, low network resolution leads to larger segments, and high network resolution leads to smaller segments. Furthermore, using the proposed method, the mean-square error in estimating the FLT segments in a FLIM image was found to consistently decrease with increasing resolution of the corresponding network. The multiresolution community detection method appeared to perform better than a popular spectral clustering-based method in performing FLIM image segmentation. At high resolution, the spectral segmentation method introduced noisy segments in its output, and it was unable to achieve a consistent decrease in mean-square error with increasing resolution. © 2013 The Authors Journal of Microscopy © 2013 Royal Microscopical Society.

Automatic Segmentation of Fluorescence Lifetime Microscopy Images of Cells Using Multi-Resolution Community Detection -A First Study

PubMed Central

Hu, Dandan; Sarder, Pinaki; Ronhovde, Peter; Orthaus, Sandra; Achilefu, Samuel; Nussinov, Zohar

2014-01-01

Inspired by a multi-resolution community detection (MCD) based network segmentation method, we suggest an automatic method for segmenting fluorescence lifetime (FLT) imaging microscopy (FLIM) images of cells in a first pilot investigation on two selected images. The image processing problem is framed as identifying segments with respective average FLTs against the background in FLIM images. The proposed method segments a FLIM image for a given resolution of the network defined using image pixels as the nodes and similarity between the FLTs of the pixels as the edges. In the resulting segmentation, low network resolution leads to larger segments, and high network resolution leads to smaller segments. Further, using the proposed method, the mean-square error (MSE) in estimating the FLT segments in a FLIM image was found to consistently decrease with increasing resolution of the corresponding network. The MCD method appeared to perform better than a popular spectral clustering based method in performing FLIM image segmentation. At high resolution, the spectral segmentation method introduced noisy segments in its output, and it was unable to achieve a consistent decrease in MSE with increasing resolution. PMID:24251410

Evaluation of a method for comparing phosphorus loads from barnyards and croplands in Otter Creek Watershed, Wisconsin

USGS Publications Warehouse

Wierl, Judy A.; Giddings, Elise M.P.; Bannerman, Roger T.

1998-01-01

Control of phosphorus from rural nonpoint sources is a major focus of current efforts to improve and protect water resources in Wisconsin and is recommended in almost every priority watershed plan prepared for the State's Nonpoint Source (NFS) Program. Barnyards and crop- lands usually are identified as the primary rural sources of phosphorus. Numerous questions have arisen about which of these two sources to control and about the method currently being used by the NFS program to compare phosphorus loads from barnyards and croplands. To evaluate the method, the U.S. Geological Survey (USGS). in cooperation with the Wisconsin Department of Natural Resources, used phosphorus-load and sediment-load data from streams and phosphorus concentrations in soils from the Otter Creek Watershed (located in the Sheboygan River Basin: fig. 1) in conjunction with two computer-based models. 

Review methods for image segmentation from computed tomography images

DOE Office of Scientific and Technical Information (OSTI.GOV)

Mamat, Nurwahidah; Rahman, Wan Eny Zarina Wan Abdul; Soh, Shaharuddin Cik

Image segmentation is a challenging process in order to get the accuracy of segmentation, automation and robustness especially in medical images. There exist many segmentation methods that can be implemented to medical images but not all methods are suitable. For the medical purposes, the aims of image segmentation are to study the anatomical structure, identify the region of interest, measure tissue volume to measure growth of tumor and help in treatment planning prior to radiation therapy. In this paper, we present a review method for segmentation purposes using Computed Tomography (CT) images. CT images has their own characteristics that affectmore » the ability to visualize anatomic structures and pathologic features such as blurring of the image and visual noise. The details about the methods, the goodness and the problem incurred in the methods will be defined and explained. It is necessary to know the suitable segmentation method in order to get accurate segmentation. This paper can be a guide to researcher to choose the suitable segmentation method especially in segmenting the images from CT scan.« less

WVR-EMAP A SMALL WATERSHED CHARACTERIZATION, CLASSIFICATION, AND ASSESSMENT FOR WEST VIRGINIA UTILIZING EMAP DESIGN AND TOOLS

EPA Science Inventory

Nationwide, there is a strong need to streamline methods for assessing impairment of surface waters (305b listings), diagnosing cause of biological impairment (303d listings), estimating total maximum daily loads (TMDLs), and/or prioritizing watershed restoration activities (Unif...

TOWARD EFFECTIVE URBAN BMPS FOR STORMWATER TREATMENT: WET PONDS VS. CONSTRUCTED WETLAND-TYPE RETENTION/DETENTION STRUCTURES

EPA Science Inventory

A goal of the Urban Watershed Management Branch of USEPA's NRMRL, Edison, NJ is to develop and demonstrate technologies and methods to manage the ecological risks posed by stormwate runoff from highly developed watersheds. This study, in particular, uses extant data and controlle...

MOLECULAR EVALUATION OF CHANGES IN PLANKTONIC BACTERIAL POPULATIONS RESULTING FROM EQUINE FECAL CONTAMINATION IN A SUB-WATERSHED

EPA Science Inventory

Considerable emphasis has been placed on developing watershed-based strategies with the potential to reduce non-point-source fecal contamination. Molecular methods applied used 16S-ribosomal-deoxyribonucleic-acid (rDNA) to try to determine sources of fecal contamination. Objectiv...

Watershed Reliability, Resilience And Vulnerability Analysis Under Uncertainty Using Water Quality Data

EPA Science Inventory

A method for assessment of watershed health is developed by employing measures of reliability, resilience and vulnerability (R-R-V) using stream water quality data. Observed water quality data are usually sparse, so that a water quality time series is often reconstructed using s...

75 FR 29531 - Agency Information Collection Activities; Proposed Collection; Comment Request; Clean Watersheds...

Federal Register 2010, 2011, 2012, 2013, 2014

2010-05-26

... wastewater treatment, supports holistic watershed management approaches. Under the ``Traditional Method'' of... the Office of Management and Budget (OMB). This ICR is scheduled to expire on January 31, 2011. Before... Management, Environmental Protection Agency, 1200 Pennsylvania Ave., NW., Washington, DC 20460; phone number...

Assessing the effects of regional payment for watershed services program on water quality using an intervention analysis model.

PubMed

Lu, Yan; He, Tian

2014-09-15

Much attention has been recently paid to ex-post assessments of socioeconomic and environmental benefits of payment for ecosystem services (PES) programs on poverty reduction, water quality, and forest protection. To evaluate the effects of a regional PES program on water quality, we selected chemical oxygen demand (COD) and ammonia-nitrogen (NH3-N) as indicators of water quality. Statistical methods and an intervention analysis model were employed to assess whether the PES program produced substantial changes in water quality at 10 water-quality sampling stations in the Shaying River watershed, China during 2006-2011. Statistical results from paired-sample t-tests and box plots of COD and NH3-N concentrations at the 10 stations showed that the PES program has played a positive role in improving water quality and reducing trans-boundary water pollution in the Shaying River watershed. Using the intervention analysis model, we quantitatively evaluated the effects of the intervention policy, i.e., the watershed PES program, on water quality at the 10 stations. The results suggest that this method could be used to assess the environmental benefits of watershed or water-related PES programs, such as improvements in water quality, seasonal flow regulation, erosion and sedimentation, and aquatic habitat. Copyright © 2014 Elsevier B.V. All rights reserved.

Spatial multiobjective optimization of agricultural conservation practices using a SWAT model and an evolutionary algorithm.

PubMed

Rabotyagov, Sergey; Campbell, Todd; Valcu, Adriana; Gassman, Philip; Jha, Manoj; Schilling, Keith; Wolter, Calvin; Kling, Catherine

2012-12-09

Finding the cost-efficient (i.e., lowest-cost) ways of targeting conservation practice investments for the achievement of specific water quality goals across the landscape is of primary importance in watershed management. Traditional economics methods of finding the lowest-cost solution in the watershed context (e.g.,(5,12,20)) assume that off-site impacts can be accurately described as a proportion of on-site pollution generated. Such approaches are unlikely to be representative of the actual pollution process in a watershed, where the impacts of polluting sources are often determined by complex biophysical processes. The use of modern physically-based, spatially distributed hydrologic simulation models allows for a greater degree of realism in terms of process representation but requires a development of a simulation-optimization framework where the model becomes an integral part of optimization. Evolutionary algorithms appear to be a particularly useful optimization tool, able to deal with the combinatorial nature of a watershed simulation-optimization problem and allowing the use of the full water quality model. Evolutionary algorithms treat a particular spatial allocation of conservation practices in a watershed as a candidate solution and utilize sets (populations) of candidate solutions iteratively applying stochastic operators of selection, recombination, and mutation to find improvements with respect to the optimization objectives. The optimization objectives in this case are to minimize nonpoint-source pollution in the watershed, simultaneously minimizing the cost of conservation practices. A recent and expanding set of research is attempting to use similar methods and integrates water quality models with broadly defined evolutionary optimization methods(3,4,9,10,13-15,17-19,22,23,25). In this application, we demonstrate a program which follows Rabotyagov et al.'s approach and integrates a modern and commonly used SWAT water quality model(7) with a multiobjective evolutionary algorithm SPEA2(26), and user-specified set of conservation practices and their costs to search for the complete tradeoff frontiers between costs of conservation practices and user-specified water quality objectives. The frontiers quantify the tradeoffs faced by the watershed managers by presenting the full range of costs associated with various water quality improvement goals. The program allows for a selection of watershed configurations achieving specified water quality improvement goals and a production of maps of optimized placement of conservation practices.

Watershed erosion modeling using the probability of sediment connectivity in a gently rolling system

NASA Astrophysics Data System (ADS)

Mahoney, David Tyler; Fox, James Forrest; Al Aamery, Nabil

2018-06-01

Sediment connectivity has been shown in recent years to explain how the watershed configuration controls sediment transport. However, we find no studies develop a watershed erosion modeling framework based on sediment connectivity, and few, if any, studies have quantified sediment connectivity for gently rolling systems. We develop a new predictive sediment connectivity model that relies on the intersecting probabilities for sediment supply, detachment, transport, and buffers to sediment transport, which is integrated in a watershed erosion model framework. The model predicts sediment flux temporally and spatially across a watershed using field reconnaissance results, a high-resolution digital elevation models, a hydrologic model, and shear-based erosion formulae. Model results validate the capability of the model to predict erosion pathways causing sediment connectivity. More notably, disconnectivity dominates the gently rolling watershed across all morphologic levels of the uplands, including, microtopography from low energy undulating surfaces across the landscape, swales and gullies only active in the highest events, karst sinkholes that disconnect drainage areas, and floodplains that de-couple the hillslopes from the stream corridor. Results show that sediment connectivity is predicted for about 2% or more the watershed's area 37 days of the year, with the remaining days showing very little or no connectivity. Only 12.8 ± 0.7% of the gently rolling watershed shows sediment connectivity on the wettest day of the study year. Results also highlight the importance of urban/suburban sediment pathways in gently rolling watersheds, and dynamic and longitudinal distributions of sediment connectivity might be further investigated in future work. We suggest the method herein provides the modeler with an added tool to account for sediment transport criteria and has the potential to reduce computational costs in watershed erosion modeling.

Is a clean river fun for all? Recognizing social vulnerability in watershed planning.

PubMed

Cutts, Bethany B; Greenlee, Andrew J; Prochaska, Natalie K; Chantrill, Carolina V; Contractor, Annie B; Wilhoit, Juliana M; Abts, Nancy; Hornik, Kaitlyn

2018-01-01

Watershed planning can lead to policy innovation and action toward environmental protection. However, groups often suffer from low engagement with communities that experience disparate impacts from flooding and water pollution. This can limit the capacity of watershed efforts to dismantle pernicious forms of social inequality. As a result, the benefits of environmental changes often flow to more empowered residents, short-changing the power of watershed-based planning as a tool to transform ecological, economic, and social relationships. The objectives of this paper are to assess whether the worldview of watershed planning actors are sufficiently attuned to local patterns of social vulnerability and whether locally significant patterns of social vulnerability can be adequately differentiated using conventional data sources. Drawing from 35 in-depth interviews with watershed planners and community stakeholders in the Milwaukee River Basin (WI, USA), we identify five unique definitions of social vulnerability. Watershed planners in our sample articulate a narrower range of social vulnerability definitions than other participants. All five definitions emphasize spatial and demographic characteristics consistent with existing ways of measuring social vulnerability. However, existing measures do not adequately differentiate among the spatio-temporal dynamics used to distinguish definitions. In response, we develop two new social vulnerability measures. The combination of interviews and demographic analyses in this study provides an assessment technique that can help watershed planners (a) understand the limits of their own conceptualization of social vulnerability and (b) acknowledge the importance of place-based vulnerabilities that may otherwise be obscured. We conclude by discussing how our methods can be a useful tool for identifying opportunities to disrupt social vulnerability in a watershed by evaluating how issue frames, outreach messages, and engagement tactics. The approach allows watershed planners to shift their own culture in order to consider socially vulnerable populations comprehensively.

Is a clean river fun for all? Recognizing social vulnerability in watershed planning

PubMed Central

Greenlee, Andrew J.; Prochaska, Natalie K.; Chantrill, Carolina V.; Contractor, Annie B.; Wilhoit, Juliana M.; Abts, Nancy; Hornik, Kaitlyn

2018-01-01

Watershed planning can lead to policy innovation and action toward environmental protection. However, groups often suffer from low engagement with communities that experience disparate impacts from flooding and water pollution. This can limit the capacity of watershed efforts to dismantle pernicious forms of social inequality. As a result, the benefits of environmental changes often flow to more empowered residents, short-changing the power of watershed-based planning as a tool to transform ecological, economic, and social relationships. The objectives of this paper are to assess whether the worldview of watershed planning actors are sufficiently attuned to local patterns of social vulnerability and whether locally significant patterns of social vulnerability can be adequately differentiated using conventional data sources. Drawing from 35 in-depth interviews with watershed planners and community stakeholders in the Milwaukee River Basin (WI, USA), we identify five unique definitions of social vulnerability. Watershed planners in our sample articulate a narrower range of social vulnerability definitions than other participants. All five definitions emphasize spatial and demographic characteristics consistent with existing ways of measuring social vulnerability. However, existing measures do not adequately differentiate among the spatio-temporal dynamics used to distinguish definitions. In response, we develop two new social vulnerability measures. The combination of interviews and demographic analyses in this study provides an assessment technique that can help watershed planners (a) understand the limits of their own conceptualization of social vulnerability and (b) acknowledge the importance of place-based vulnerabilities that may otherwise be obscured. We conclude by discussing how our methods can be a useful tool for identifying opportunities to disrupt social vulnerability in a watershed by evaluating how issue frames, outreach messages, and engagement tactics. The approach allows watershed planners to shift their own culture in order to consider socially vulnerable populations comprehensively. PMID:29715285

Land Cover Vegetation Changes and Hydrology in Central Texas

NASA Astrophysics Data System (ADS)

Banta, J. R.; Slattery, R.

2013-12-01

Encroachment of woody vegetation into traditional savanna grassland ecosystems in central Texas has largely been attributed to land use practices of settlers, most notably overgrazing and fire suppression. Implementing changes in land cover vegetation (removing the woody vegetation and allowing native grasses to reestablish in the area, commonly referred to as brush management), could potentially change the hydrology in a watershed. The U.S. Geological Survey, in cooperation with several local, State, and Federal agencies, studied the hydrologic effects of ashe juniper (Juniperus ashei) removal as a brush management conservation practice in the Honey Creek State Natural Area in Comal County, Tex. Two adjacent watersheds of 104 and 159 hectares were used in a paired study. Rainfall, streamflow, evapotranspiration (Bowen ratio method), and water quality data were collected in both watersheds. Using a hydrologic mass balance approach, rainfall was allocated to surface-water runoff, evapotranspiration, and potential groundwater recharge. Groundwater recharge was not directly measured, but estimated as the residual of the hydrologic mass balance. After hydrologic data were collected in both watersheds for 3 years, approximately 80 percent of the woody vegetation (ashe juniper) was selectively removed from the 159 hectare watershed (treatment watershed). Brush management was not implemented in the other (reference) watershed. Hydrologic data were collected in both watersheds for six years after brush management implementation. The resulting data were examined for differences in the hydrologic budget between the reference and treatment watersheds as well as between pre- and post-brush management periods to assess effects of the treatment. Results indicate there are differences in the hydrologic budget and water quality between the reference and treatment watersheds, as well as between pre- and post-brush management periods.

Automated segmentation of murine lung tumors in x-ray micro-CT images

NASA Astrophysics Data System (ADS)

Swee, Joshua K. Y.; Sheridan, Clare; de Bruin, Elza; Downward, Julian; Lassailly, Francois; Pizarro, Luis

2014-03-01

Recent years have seen micro-CT emerge as a means of providing imaging analysis in pre-clinical study, with in-vivo micro-CT having been shown to be particularly applicable to the examination of murine lung tumors. Despite this, existing studies have involved substantial human intervention during the image analysis process, with the use of fully-automated aids found to be almost non-existent. We present a new approach to automate the segmentation of murine lung tumors designed specifically for in-vivo micro-CT-based pre-clinical lung cancer studies that addresses the specific requirements of such study, as well as the limitations human-centric segmentation approaches experience when applied to such micro-CT data. Our approach consists of three distinct stages, and begins by utilizing edge enhancing and vessel enhancing non-linear anisotropic diffusion filters to extract anatomy masks (lung/vessel structure) in a pre-processing stage. Initial candidate detection is then performed through ROI reduction utilizing obtained masks and a two-step automated segmentation approach that aims to extract all disconnected objects within the ROI, and consists of Otsu thresholding, mathematical morphology and marker-driven watershed. False positive reduction is finally performed on initial candidates through random-forest-driven classification using the shape, intensity, and spatial features of candidates. We provide validation of our approach using data from an associated lung cancer study, showing favorable results both in terms of detection (sensitivity=86%, specificity=89%) and structural recovery (Dice Similarity=0.88) when compared against manual specialist annotation.

Relating Convective System Durability with Vertical Wind Profile extracted from NCEP/NCAR Reanalysis

NASA Astrophysics Data System (ADS)

Bergès, Jean-Claude; Beltrando, Gérard; Cacault, Philippe

2014-05-01

Various theoretical models focus on the relationship between wind characteristic and convective system durability. Yet in 1988, Rotuno, Klemp and Weisman state that an optimal live length result from a balance between cold pool thickness and low level wind shear. However these models require a knowledge of local upper air environment and these data are scarcely available for climatological studies. Our presentation address the issue of relating the wind vertical profile extracted from reanalysis fields with a convective system type index. Whereas getting wind data from the NCEP/NCAR database is a straightforward task, assessing convective system extension from geostationary satellite data raise both methodological and practical issues. In a climatological view of convective systems, the initiating steps can be be neglected and a tropopause temperature threshold could be sufficient to delineate systems area. Thus the dynamic parameters between two consecutive would be obtained by a maximum recovery algorithm. But this simple method has to be enhanced to avoid two drawbacks: a rough system area overestimation due to the trailing cirrus and an over-segmentation of active systems. To mitigate the first bias a watershed image segmentation is carry out and the patches with a negative growing rate are eliminated. In order to properly join different parts of the same system, a 3D labeling algorithm has been implemented. Moreover, as motion retrieval methods are based on overlapping area, spatial and temporal resolution imports and full data processing require optimized computation procedures. Based on these methods, we have produced a base of convective systems trajectory based on MSG and Meteosat data. To avoid parallax effects only the central part of the acquisition disk has been considered. System extension and duration has been compared with wind shear in amplitude and direction. The preliminary results shows a global effect consistent with simulation models, but statistical data significance has yet to be investigated.

Landslide potential zonation in Baleghlu watershed (NW Iran) using AHP Fuzzy method

NASA Astrophysics Data System (ADS)

Jananeh, Keristineh; Roostai, Shahram

2017-04-01

Landslides and slope instabilities are among the important natural hazards, which cause human and financial casualties and loss of economic resources every year. These hazards mostly occur in natural slopes or those manipulated by human. Zonation of areas with regard to landslide potential is one of the means to identify areas prone to produce landslide and so, to conduct plannings and management based on the prepared zonation maps in order to reduce the casualties. This contribution investigates on the landslide potential zonation within the Baleghlu watershed. This watershed is located in the southeast of Sabalan volcano (NW Iran) within the longitudes of 47° 48` and 48° 12` E and northern latitudes of 37° 51` and 38° 16` N. Its main river is Baleghlu, which is later connected to the Arax river through the Qarasu and Dareh Roud rivers, and is finally terminated to the Caspian sea. The method of investigation is Fuzzy AHP in the GIS environment. First, the main factors including the slope and its direction, geology, soil, climate, distance from the road and river and land usage were investigated and then, after preparing data layers based on the above-mentioned parameters and giving weights to them in the GIS environment, the landslide potential map was prepared by Fuzzy AHP method. It was revealed that the slope factor with the value of 0.3882 has the highest weight, while the land usage factor with the value of 0.0287 has the lowest weight. According to the final zonation map of the landslide potential, the watershed was divided into 5 classes, ranging from very high potential class to the very low potential. The obtained results showed that the largest part of the watershed (32.21%) has low landslide potential, while about 13.5% of it has very high potential. Areas with very high and high landslide potential (327.39 km2 area) are mainly located in the northwest of the watershed, with some small areas distributed in the south and east, while areas with very low and low potential (504.06 km2) are mainly found in the central to northwestern and southern parts of the watershed.

Short segment search method for phylogenetic analysis using nested sliding windows

NASA Astrophysics Data System (ADS)

Iskandar, A. A.; Bustamam, A.; Trimarsanto, H.

2017-10-01

To analyze phylogenetics in Bioinformatics, coding DNA sequences (CDS) segment is needed for maximal accuracy. However, analysis by CDS cost a lot of time and money, so a short representative segment by CDS, which is envelope protein segment or non-structural 3 (NS3) segment is necessary. After sliding window is implemented, a better short segment than envelope protein segment and NS3 is found. This paper will discuss a mathematical method to analyze sequences using nested sliding window to find a short segment which is representative for the whole genome. The result shows that our method can find a short segment which more representative about 6.57% in topological view to CDS segment than an Envelope segment or NS3 segment.

Automated Tumor Volumetry Using Computer-Aided Image Segmentation

PubMed Central

Bilello, Michel; Sadaghiani, Mohammed Salehi; Akbari, Hamed; Atthiah, Mark A.; Ali, Zarina S.; Da, Xiao; Zhan, Yiqang; O'Rourke, Donald; Grady, Sean M.; Davatzikos, Christos

2015-01-01

Rationale and Objectives Accurate segmentation of brain tumors, and quantification of tumor volume, is important for diagnosis, monitoring, and planning therapeutic intervention. Manual segmentation is not widely used because of time constraints. Previous efforts have mainly produced methods that are tailored to a particular type of tumor or acquisition protocol and have mostly failed to produce a method that functions on different tumor types and is robust to changes in scanning parameters, resolution, and image quality, thereby limiting their clinical value. Herein, we present a semiautomatic method for tumor segmentation that is fast, accurate, and robust to a wide variation in image quality and resolution. Materials and Methods A semiautomatic segmentation method based on the geodesic distance transform was developed and validated by using it to segment 54 brain tumors. Glioblastomas, meningiomas, and brain metastases were segmented. Qualitative validation was based on physician ratings provided by three clinical experts. Quantitative validation was based on comparing semiautomatic and manual segmentations. Results Tumor segmentations obtained using manual and automatic methods were compared quantitatively using the Dice measure of overlap. Subjective evaluation was performed by having human experts rate the computerized segmentations on a 0–5 rating scale where 5 indicated perfect segmentation. Conclusions The proposed method addresses a significant, unmet need in the field of neuro-oncology. Specifically, this method enables clinicians to obtain accurate and reproducible tumor volumes without the need for manual segmentation. PMID:25770633

Environmental setting of Maple Creek watershed, Nebraska

USGS Publications Warehouse

Fredrick, Brian S.; Linard, Joshua I.; Carpenter, Jennifer L.

2006-01-01

The Maple Creek watershed covers a 955-square-kilometer area in eastern Nebraska, which is a region dominated by agricultural land use. The Maple Creek watershed is one of seven areas currently included in a nationwide study of the sources, transport, and fate of water and chemicals in agricultural watersheds. This study, known as the topical study of 'Agricultural Chemicals: Sources, Transport, and Fate' is part of the National Water-Quality Assessment Program being conducted by the U.S. Geological Survey. The Program is designed to describe water-quality conditions and trends based on representative surface- and ground-water resources across the Nation. The objective of the Agricultural Chemicals topical study is to investigate the sources, transport, and fate of selected agricultural chemicals in a variety of agriculturally diverse environmental settings. The Maple Creek watershed was selected for the Agricultural Chemicals topical study because its watershed represents the agricultural setting that characterizes eastern Nebraska. This report describes the environmental setting of the Maple Creek watershed in the context of how agricultural practices, including agricultural chemical applications and irrigation methods, interface with natural settings and hydrologic processes. A description of the environmental setting of a subwatershed within the drainage area of Maple Creek is included to improve the understanding of the variability of hydrologic and chemical cycles at two different scales.

Integrating local research watersheds into hydrologic education: Lessons from the Dry Creek Experimental Watershed

NASA Astrophysics Data System (ADS)

McNamara, J. P.; Aishlin, P. S.; Flores, A. N.; Benner, S. G.; Marshall, H. P.; Pierce, J. L.

2014-12-01

While a proliferation of instrumented research watersheds and new data sharing technologies has transformed hydrologic research in recent decades, similar advances have not been realized in hydrologic education. Long-standing problems in hydrologic education include discontinuity of hydrologic topics from introductory to advanced courses, inconsistency of content across academic departments, and difficulties in development of laboratory and homework assignments utilizing large time series and spatial data sets. Hydrologic problems are typically not amenable to "back-of-the-chapter" examples. Local, long-term research watersheds offer solutions to these problems. Here, we describe our integration of research and monitoring programs in the Dry Creek Experimental Watershed into undergraduate and graduate hydrology programs at Boise State University. We developed a suite of watershed-based exercises into courses and curriculums using real, tangible datasets from the watershed to teach concepts not amenable to traditional textbook and lecture methods. The aggregation of exercises throughout a course or degree allows for scaffolding of concepts with progressive exposure of advanced concepts throughout a course or degree. The need for exercises of this type is growing as traditional lecture-based classes (passive learning from a local authoritative source) are being replaced with active learning courses that integrate many sources of information through situational factors.

Estimation of pollutant loads considering dam operation in Han River Basin by BASINS/Hydrological Simulation Program-FORTRAN.

PubMed

Jung, Kwang-Wook; Yoon, Choon-G; Jang, Jae-Ho; Kong, Dong-Soo

2008-01-01

Effective watershed management often demands qualitative and quantitative predictions of the effect of future management activities as arguments for policy makers and administration. The BASINS geographic information system was developed to compute total maximum daily loads, which are helpful to establish hydrological process and water quality modeling system. In this paper the BASINS toolkit HSPF model is applied in 20,271 km(2) large watershed of the Han River Basin is used for applicability of HSPF and BMPs scenarios. For proper evaluation of watershed and stream water quality, comprehensive estimation methods are necessary to assess large amounts of point source and nonpoint-source (NPS) pollution based on the total watershed area. In this study, The Hydrological Simulation Program-FORTRAN (HSPF) was estimated to simulate watershed pollutant loads containing dam operation and applied BMPs scenarios for control NPS pollution. The 8-day monitoring data (about three years) were used in the calibration and verification processes. Model performance was in the range of "very good" and "good" based on percent difference. The water-quality simulation results were encouraging for this large sizable watershed with dam operation practice and mixed land uses; HSPF proved adequate, and its application is recommended to simulate watershed processes and BMPs evaluation. IWA Publishing 2008.

Total suspended solids concentrations and yields for water-quality monitoring stations in Gwinnett County, Georgia, 1996-2009

USGS Publications Warehouse

Landers, Mark N.

2013-01-01

The U.S. Geological Survey, in cooperation with the Gwinnett County Department of Water Resources, established a water-quality monitoring program during late 1996 to collect comprehensive, consistent, high-quality data for use by watershed managers. As of 2009, continuous streamflow and water-quality data as well as discrete water-quality samples were being collected for 14 watershed monitoring stations in Gwinnett County. This report provides statistical summaries of total suspended solids (TSS) concentrations for 730 stormflow and 710 base-flow water-quality samples collected between 1996 and 2009 for 14 watershed monitoring stations in Gwinnett County. Annual yields of TSS were estimated for each of the 14 watersheds using methods described in previous studies. TSS yield was estimated using linear, ordinary least-squares regression of TSS and explanatory variables of discharge, turbidity, season, date, and flow condition. The error of prediction for estimated yields ranged from 1 to 42 percent for the stations in this report; however, the actual overall uncertainty of the estimated yields cannot be less than that of the observed yields (± 15 to 20 percent). These watershed yields provide a basis for evaluation of how watershed characteristics, climate, and watershed management practices affect suspended sediment yield.

A simple approach to distinguish land-use and climate-change effects on watershed hydrology

USGS Publications Warehouse

Tomer, M.D.; Schilling, K.E.

2009-01-01

Impacts of climate change on watershed hydrology are subtle compared to cycles of drought and surplus precipitation (PPT), and difficult to separate from effects of land-use change. In the US Midwest, increasing baseflow has been more attributed to increased annual cropping than climate change. The agricultural changes have led to increased fertilizer use and nutrient losses, contributing to Gulf of Mexico hypoxia. In a 25-yr, small-watershed experiment in Iowa, when annual hydrologic budgets were accrued between droughts, a coupled water-energy budget (ecohydrologic) analysis showed effects of tillage and climate on hydrology could be distinguished. The fraction of PPT discharged increased with conservation tillage and time. However, unsatisfied evaporative demand (PET - Hargreaves method) increased under conservation tillage, but decreased with time. A conceptual model was developed and a similar analysis conducted on long-term (>1920s) records from four large, agricultural Midwest watersheds underlain by fine-grained tills. At least three of four watersheds showed decreases in PET, and increases in PPT, discharge, baseflow and PPT:PET ratios (p < 0.10). An analysis of covariance showed the fraction of precipitation discharged increased, while unsatisfied evaporative demand decreased with time among the four watersheds (p < 0.001). Within watersheds, agricultural changes were associated with ecohydrologic shifts that affected timing and significance, but not direction, of these trends. Thus, an ecohydrologic concept derived from small-watershed research, when regionally applied, suggests climate change has increased discharge from Midwest watersheds, especially since the 1970s. By inference, climate change has increased susceptibility of nutrients to water transport, exacerbating Gulf of Mexico hypoxia.

What Is the Role of Land-Use Compositions and Spatial Configurations in Sediment Yield from Mountainous Watershed?

NASA Astrophysics Data System (ADS)

Shi, Z. H.

2014-12-01

There are strong ties between land use and sediment yield in watersheds. Many studies have used multivariate regression techniques to explore the response of sediment yield to land-use compositions and spatial configurations in watersheds. However, one issue with the use of conventional statistical methods to address relationships between land-use compositions and spatial configurations and sediment yield is multicollinearity. This paper examines the combined effects of land-use compositions and land-use spatial configurations of the watershed on the specific sediment yield of the Upper Du River watershed (8,973 km2) in China using the Soil and Water Assessment Tool (SWAT) and partial least-squares regression (PLSR). The land-use compositions and spatial configurations of the watershed were calculated at the sub-watershed scale. The sediment yields from sub-watershed were evaluated using SWAT model. The first-order factors were identified by calculating the variable importance for the projection (VIP). The results revealed that the land-use compositions exerted the largest effects on the specific sediment yield and explained 61.2% of the variation in the specific sediment yield. Land-use spatial configurations were also found to have a large effect on the specific sediment yield and explained 21.7% of the observed variation in the specific sediment yield. The following are the dominant first-order factors of the specific sediment yield at the sub-watershed scale: the areal percentages of agriculture and forest, patch density, value of the Shannon's diversity index, contagion. The VIP values suggested that the Shannon's diversity index and contagion are important factors for sediment delivery.

Ohio's Abandoned Mine Lands Reclamation Program: a Study of Data Collection and Evaluation Techniques

NASA Technical Reports Server (NTRS)

Sperry, S. L.

1982-01-01

The planning process for a statewide reclamation plan of Ohio abandoned minelands in response to the Federal Surface Mining Control and Reclamation Act of 1977 included: (1) the development of a screening and ranking methodology; (2) the establishment of a statewide review of major watersheds affected by mining; (3) the development of an immediate action process; and (4) a prototypical study of a priority watershed demonstrating the data collection, analysis, display and evaluation to be used for the remaining state watersheds. Historical methods for satisfying map information analysis and evaluation, as well as current methodologies being used were discussed. Various computer mapping and analysis programs were examined for their usability in evaluating the priority reclamation sites. Hand methods were chosen over automated procedures; intuitive evaluation was the primary reason.

White blood cell segmentation by color-space-based k-means clustering.

PubMed

Zhang, Congcong; Xiao, Xiaoyan; Li, Xiaomei; Chen, Ying-Jie; Zhen, Wu; Chang, Jun; Zheng, Chengyun; Liu, Zhi

2014-09-01

White blood cell (WBC) segmentation, which is important for cytometry, is a challenging issue because of the morphological diversity of WBCs and the complex and uncertain background of blood smear images. This paper proposes a novel method for the nucleus and cytoplasm segmentation of WBCs for cytometry. A color adjustment step was also introduced before segmentation. Color space decomposition and k-means clustering were combined for segmentation. A database including 300 microscopic blood smear images were used to evaluate the performance of our method. The proposed segmentation method achieves 95.7% and 91.3% overall accuracy for nucleus segmentation and cytoplasm segmentation, respectively. Experimental results demonstrate that the proposed method can segment WBCs effectively with high accuracy.

Assessment of conservation practices in the Fort Cobb Reservoir watershed, southwestern Oklahoma

USGS Publications Warehouse

Becker, Carol J.

2011-01-01

The Fort Cobb Reservoir watershed encompasses about 813 square kilometers of rural farm land in Caddo, Custer, and Washita Counties in southwestern Oklahoma. The Fort Cobb Reservoir and six stream segments were identified on the Oklahoma 1998 303(d) list as not supporting designated beneficial uses because of impairment by nutrients, suspended solids, sedimentation, pesticides, and unknown toxicity. As a result, State and Federal agencies, in collaboration with conservation districts and landowners, started conservation efforts in 2001 to decrease erosion and transport of sediments and nutrients to the reservoir and improve water quality in tributaries. The U.S. Department of Agriculture selected the Fort Cobb Reservoir watershed in 2003 as 1 of 14 benchmark watersheds under the Conservation Effectiveness Assessment Project with the objective of quantifying the environmental benefits derived from agricultural conservation programs in reducing inflows of sediments and phosphorus to the reservoir. In November 2004, the Biologic, Geographic, Geologic, and Water Disciplines of the U.S. Geological Survey, in collaboration with the Agricultural Research Service, Grazinglands Research Laboratory in El Reno, Oklahoma, began an interdisciplinary investigation to produce an integrated publication to complement this program. This publication is a compilation of 10 report chapters describing land uses, soils, geology, climate, and water quality in streams and the reservoir through results of field and remote sensing investigations from 2004 to 2007. The investigations indicated that targeting best-management practices to small intermittent streams draining to the reservoir and to the Cobb Creek subwatershed may effectively augment efforts to improve eutrophic to hypereutrophic conditions that continue to affect the reservoir. The three major streams flowing into the reservoir contribute nutrients causing eutrophication, but minor streams draining cultivated fields near the reservoir appeared to be disproportionate contributors of nutrients. Increasing conservation practices on small streams may have a greater effect in mitigating eutrophication in the reservoir than additional installation of such measures on the larger creeks.

a New Improved Threshold Segmentation Method for Scanning Images of Reservoir Rocks Considering Pore Fractal Characteristics

NASA Astrophysics Data System (ADS)

Lin, Wei; Li, Xizhe; Yang, Zhengming; Lin, Lijun; Xiong, Shengchun; Wang, Zhiyuan; Wang, Xiangyang; Xiao, Qianhua

Based on the basic principle of the porosity method in image segmentation, considering the relationship between the porosity of the rocks and the fractal characteristics of the pore structures, a new improved image segmentation method was proposed, which uses the calculated porosity of the core images as a constraint to obtain the best threshold. The results of comparative analysis show that the porosity method can best segment images theoretically, but the actual segmentation effect is deviated from the real situation. Due to the existence of heterogeneity and isolated pores of cores, the porosity method that takes the experimental porosity of the whole core as the criterion cannot achieve the desired segmentation effect. On the contrary, the new improved method overcomes the shortcomings of the porosity method, and makes a more reasonable binary segmentation for the core grayscale images, which segments images based on the actual porosity of each image by calculated. Moreover, the image segmentation method based on the calculated porosity rather than the measured porosity also greatly saves manpower and material resources, especially for tight rocks.

Watershed Effects on Streamflow Quantity and Quality in Six Watersheds of Gwinnett County, Georgia

USGS Publications Warehouse

Landers, Mark N.; Ankcorn, Paul D.; McFadden, Keith W.

2007-01-01

Watershed management is critical for the protection and enhancement of streams that provide multiple benefits for Gwinnett County, Georgia, and downstream communities. Successful watershed management requires an understanding of how stream quality is affected by watershed characteristics. The influence of watershed characteristics on stream quality is complex, particularly for the nonpoint sources of pollutants that affect urban watersheds. The U.S. Geological Survey (USGS), in cooperation with Gwinnett County Department of Water Resources (formerly known as Public Utilities), established a water-quality monitoring program during late 1996 to collect comprehensive, consistent, high-quality data for use by watershed managers. Between 1996 and 2003, more than 10,000 analyses were made for more than 430 water-quality samples. Continuous-flow and water-quality data have been collected since 1998. Loads have been computed for selected constituents from 1998 to 2003. Changing stream hydrology is a primary driver for many other water-quality and aquatic habitat effects. Primary factors affecting stream hydrology (after watershed size and climate) within Gwinnett County are watershed slope and land uses. For the six study watersheds in Gwinnett County, watershedwide imperviousness up to 12 percent does not have a well-defined influence on stream hydrology, whereas two watersheds with 21- and 35-percent impervious area are clearly impacted. In the stream corridor, however, imperviousness from 1.6 to 4.4 percent appears to affect baseflow and stormflow for all six watersheds. Relations of concentrations to discharge are used to develop regression models to compute constituent loads using the USGS LOAD ESTimator model. A unique method developed in this study is used to calibrate the model using separate baseflow and stormflow sample datasets. The method reduced model error and provided estimates of the load associated with the baseflow and stormflow parts of the hydrograph. Annual load of total suspended sediment is a performance criterion in Gwinnett County's Watershed Protection Plan. Median concentrations of total suspended solids in stormflow range from 30 to 180 times greater than in baseflow. This increase in total suspended solids concentration with increasing discharge has a multiplied effect on total suspended solids load, 97 to 99 percent of which is transported during stormflow. Annual total suspended solids load is highly dependent on annual precipitation; between 1998 and 2003 load for the wettest year was up to 28 times greater than for the driest year. Average annual total suspended solids yield from 1998-2003 in the six watersheds increased with high-density and transportation/utility land uses, and generally decreased with low-density residential, estate/park, and undeveloped land uses. Watershed characteristics also were related to annual loads of total phosphorus, dissolved phosphorus, total nitrogen, total dissolved solids, biochemical oxygen demand, and total zinc, as well as stream alkalinity. Flow-adjusted total suspended solids, total phosphorus, and total zinc stormflow concentrations between 1996 and 2003 have a seasonal pattern in five of the six watersheds. Flow-adjusted concentrations typically peak during late summer, between July and August. The seasonal pattern is stronger for more developed watersheds and may be related to seasonal land-disturbance activities and/or to seasonal rainfall intensity, both of which increase in summer. Adjusting for seasonality in the computation of constituent load caused the standard error of annual total suspended solids load to improve by an average of 11 percent, and increased computed summer total suspended solids loads by an average of 45 percent and decreased winter total suspended solids loads by an average of 40 percent. Total annual loads changed by less than 5 percent on the average. Graphical and statistical analyses do not indicate a time tre

Spatially-Distributed Cost–Effectiveness Analysis Framework to Control Phosphorus from Agricultural Diffuse Pollution

PubMed Central

Geng, Runzhe; Wang, Xiaoyan; Sharpley, Andrew N.; Meng, Fande

2015-01-01

Best management practices (BMPs) for agricultural diffuse pollution control are implemented at the field or small-watershed scale. However, the benefits of BMP implementation on receiving water quality at multiple spatial is an ongoing challenge. In this paper, we introduce an integrated approach that combines risk assessment (i.e., Phosphorus (P) index), model simulation techniques (Hydrological Simulation Program–FORTRAN), and a BMP placement tool at various scales to identify the optimal location for implementing multiple BMPs and estimate BMP effectiveness after implementation. A statistically significant decrease in nutrient discharge from watersheds is proposed to evaluate the effectiveness of BMPs, strategically targeted within watersheds. Specifically, we estimate two types of cost-effectiveness curves (total pollution reduction and proportion of watersheds improved) for four allocation approaches. Selection of a ‘‘best approach” depends on the relative importance of the two types of effectiveness, which involves a value judgment based on the random/aggregated degree of BMP distribution among and within sub-watersheds. A statistical optimization framework is developed and evaluated in Chaohe River Watershed located in the northern mountain area of Beijing. Results show that BMP implementation significantly (p >0.001) decrease P loss from the watershed. Remedial strategies where BMPs were targeted to areas of high risk of P loss, deceased P loads compared with strategies where BMPs were randomly located across watersheds. Sensitivity analysis indicated that aggregated BMP placement in particular watershed is the most cost-effective scenario to decrease P loss. The optimization approach outlined in this paper is a spatially hierarchical method for targeting nonpoint source controls across a range of scales from field to farm, to watersheds, to regions. Further, model estimates showed targeting at multiple scales is necessary to optimize program efficiency. The integrated model approach described that selects and places BMPs at varying levels of implementation, provides a new theoretical basis and technical guidance for diffuse pollution management in agricultural watersheds. PMID:26313561

Spatially-Distributed Cost-Effectiveness Analysis Framework to Control Phosphorus from Agricultural Diffuse Pollution.

PubMed

Geng, Runzhe; Wang, Xiaoyan; Sharpley, Andrew N; Meng, Fande

2015-01-01

Best management practices (BMPs) for agricultural diffuse pollution control are implemented at the field or small-watershed scale. However, the benefits of BMP implementation on receiving water quality at multiple spatial is an ongoing challenge. In this paper, we introduce an integrated approach that combines risk assessment (i.e., Phosphorus (P) index), model simulation techniques (Hydrological Simulation Program-FORTRAN), and a BMP placement tool at various scales to identify the optimal location for implementing multiple BMPs and estimate BMP effectiveness after implementation. A statistically significant decrease in nutrient discharge from watersheds is proposed to evaluate the effectiveness of BMPs, strategically targeted within watersheds. Specifically, we estimate two types of cost-effectiveness curves (total pollution reduction and proportion of watersheds improved) for four allocation approaches. Selection of a ''best approach" depends on the relative importance of the two types of effectiveness, which involves a value judgment based on the random/aggregated degree of BMP distribution among and within sub-watersheds. A statistical optimization framework is developed and evaluated in Chaohe River Watershed located in the northern mountain area of Beijing. Results show that BMP implementation significantly (p >0.001) decrease P loss from the watershed. Remedial strategies where BMPs were targeted to areas of high risk of P loss, deceased P loads compared with strategies where BMPs were randomly located across watersheds. Sensitivity analysis indicated that aggregated BMP placement in particular watershed is the most cost-effective scenario to decrease P loss. The optimization approach outlined in this paper is a spatially hierarchical method for targeting nonpoint source controls across a range of scales from field to farm, to watersheds, to regions. Further, model estimates showed targeting at multiple scales is necessary to optimize program efficiency. The integrated model approach described that selects and places BMPs at varying levels of implementation, provides a new theoretical basis and technical guidance for diffuse pollution management in agricultural watersheds.

Creating a standardized watersheds database for the Lower Rio Grande/Río Bravo, Texas

USGS Publications Warehouse

Brown, J.R.; Ulery, Randy L.; Parcher, Jean W.

2000-01-01

This report describes the creation of a large-scale watershed database for the lower Rio Grande/Río Bravo Basin in Texas. The watershed database includes watersheds delineated to all 1:24,000-scale mapped stream confluences and other hydrologically significant points, selected watershed characteristics, and hydrologic derivative datasets.Computer technology allows generation of preliminary watershed boundaries in a fraction of the time needed for manual methods. This automated process reduces development time and results in quality improvements in watershed boundaries and characteristics. These data can then be compiled in a permanent database, eliminating the time-consuming step of data creation at the beginning of a project and providing a stable base dataset that can give users greater confidence when further subdividing watersheds.A standardized dataset of watershed characteristics is a valuable contribution to the understanding and management of natural resources. Vertical integration of the input datasets used to automatically generate watershed boundaries is crucial to the success of such an effort. The optimum situation would be to use the digital orthophoto quadrangles as the source of all the input datasets. While the hydrographic data from the digital line graphs can be revised to match the digital orthophoto quadrangles, hypsography data cannot be revised to match the digital orthophoto quadrangles. Revised hydrography from the digital orthophoto quadrangle should be used to create an updated digital elevation model that incorporates the stream channels as revised from the digital orthophoto quadrangle. Computer-generated, standardized watersheds that are vertically integrated with existing digital line graph hydrographic data will continue to be difficult to create until revisions can be made to existing source datasets. Until such time, manual editing will be necessary to make adjustments for man-made features and changes in the natural landscape that are not reflected in the digital elevation model data.

Creating a standardized watersheds database for the lower Rio Grande/Rio Bravo, Texas

USGS Publications Warehouse

Brown, Julie R.; Ulery, Randy L.; Parcher, Jean W.

2000-01-01

This report describes the creation of a large-scale watershed database for the lower Rio Grande/Rio Bravo Basin in Texas. The watershed database includes watersheds delineated to all 1:24,000-scale mapped stream confluences and other hydrologically significant points, selected watershed characteristics, and hydrologic derivative datasets. Computer technology allows generation of preliminary watershed boundaries in a fraction of the time needed for manual methods. This automated process reduces development time and results in quality improvements in watershed boundaries and characteristics. These data can then be compiled in a permanent database, eliminating the time-consuming step of data creation at the beginning of a project and providing a stable base dataset that can give users greater confidence when further subdividing watersheds. A standardized dataset of watershed characteristics is a valuable contribution to the understanding and management of natural resources. Vertical integration of the input datasets used to automatically generate watershed boundaries is crucial to the success of such an effort. The optimum situation would be to use the digital orthophoto quadrangles as the source of all the input datasets. While the hydrographic data from the digital line graphs can be revised to match the digital orthophoto quadrangles, hypsography data cannot be revised to match the digital orthophoto quadrangles. Revised hydrography from the digital orthophoto quadrangle should be used to create an updated digital elevation model that incorporates the stream channels as revised from the digital orthophoto quadrangle. Computer-generated, standardized watersheds that are vertically integrated with existing digital line graph hydrographic data will continue to be difficult to create until revisions can be made to existing source datasets. Until such time, manual editing will be necessary to make adjustments for man-made features and changes in the natural landscape that are not reflected in the digital elevation model data.

Geospatial Estimates of Road Salt Usage Across a Gradient of Urbanizing Watersheds in Southern Ontario:Thesis for Masters in Spatial Analysis (MSA)

NASA Astrophysics Data System (ADS)

Giberson, G. K.; Oswald, C.

2015-12-01

In areas affected by snow, chloride (Cl) salts are widely used as a de-icing agent to improve road conditions. While the improvement in road safety is indisputable, there are environmental consequences to local aquatic ecosystems. In many waterways, Cl concentrations have been increasing since the early 1990s, often exceeding national water quality guidelines. To determine the quantity of Cl that is accumulating in urban and urbanizing watersheds, accurate estimates of road salt usage at the watershed-scale are needed. The complex jurisdictional control over road salt application in southern Ontario lends itself to a geospatial approach for calculating Cl inputs to improve the accuracy of watershed-scale Cl mass balance estimates. This study will develop a geospatial protocol for combining information on road salt applications and road network areas to refine watershed-scale Cl inputs, as well as assess spatiotemporal patterns in road salt application across the southern Ontario study region. The overall objective of this project is to use geospatial methods (predominantly ArcGIS) to develop high-accuracy estimates of road salt usage in urbanizing watersheds in southern Ontario. Specifically, the aims will be to map and summarize the types and areas ("lane-lengths") of roadways in each watershed that have road salt applied to them, to determine the most appropriate source(s) of road salt usage data for each watershed, taking into consideration multiple levels of jurisdiction (e.g. municipal, regional, provincial), to calculate and summarize sub-watershed and watershed-scale road salt usage estimates for multiple years, and to analyze intra-watershed spatiotemporal patterns of road salt usage, especially focusing on impervious surfaces. These analyses will recommend areas of concern exacerbated by high-levels of road salt distribution; recommendations around modifying on-the-ground operations will be the next step in helping to correct these issues.

Riparian vegetation as an indicator of riparian condition: Detecting departures from historic condition across the North American West.

PubMed

Macfarlane, William W; Gilbert, Jordan T; Jensen, Martha L; Gilbert, Joshua D; Hough-Snee, Nate; McHugh, Peter A; Wheaton, Joseph M; Bennett, Stephen N

2017-11-01

Floodplain riparian ecosystems support unique vegetation communities and high biodiversity relative to terrestrial landscapes. Accordingly, estimating riparian ecosystem health across landscapes is critical for sustainable river management. However, methods that identify local riparian vegetation condition, an effective proxy for riparian health, have not been applied across broad, regional extents. Here we present an index to assess reach-scale (500 m segment) riparian vegetation condition across entire drainage networks within large, physiographically-diverse regions. We estimated riparian vegetation condition for 53,250 km of perennial streams and rivers, 25,685 km in Utah, and 27,565 km in twelve watersheds of the interior Columbia River Basin (CRB), USA. We used nationally available, existing land cover classification derived from 30 m Landsat imagery (LANDFIRE EVT) and a modeled estimate of pre-European settlement land cover (LANDFIRE BpS). The index characterizes riparian vegetation condition as the ratio of existing native riparian vegetation cover to pre-European settlement riparian vegetation cover at a given reach. Roughly 62% of Utah and 48% of CRB watersheds showed significant (>33%) to large (>66%) departure from historic condition. Riparian vegetation change was predominantly caused by human land-use impacts (development and agriculture), or vegetation change (native riparian to invasive or upland vegetation types) that likely resulted from flow and disturbance regime alteration. Through comparisons to ground-based classification results, we estimate the existing vegetation component of the index to be 85% accurate. Our assessments yielded riparian condition maps that will help resource managers better prioritize sites and treatments for reach-scale conservation and restoration activities. Copyright © 2016 Elsevier Ltd. All rights reserved.

Post-Ischemic Bowel Stricture: CT Features in Eight Cases

PubMed Central

Kim, Jin Sil; Hong, Seung-Mo; Park, Seong Ho; Lee, Jong Seok; Kim, Ah Young; Ha, Hyun Kwon

2017-01-01

Objective To investigate the characteristic radiologic features of post-ischemic stricture, which can then be implemented to differentiate that specific disease from other similar bowel diseases, with an emphasis on computed tomography (CT) features. Materials and Methods Eight patients with a diagnosis of ischemic bowel disease, who were also diagnosed with post-ischemic stricture on the basis of clinical or pathologic findings, were included. Detailed clinical data was collected from the available electronic medical records. Two radiologists retrospectively reviewed all CT images. Pathologic findings were also analyzed. Results The mean interval between the diagnosis of ischemic bowel disease and stricture formation was 57 days. The severity of ischemic bowel disease was variable. Most post-ischemic strictures developed in the ileum (n = 5), followed by the colon (n = 2) and then the jejunum (n = 1). All colonic strictures developed in the “watershed zone.” The pathologic features of post-ischemic stricture were deep ulceration, submucosal/subserosal fibrosis and chronic transmural inflammation. The mean length of the post-ischemic stricture was 7.4 cm. All patients in this study possessed one single stricture. On contrast-enhanced CT, most strictures possessed concentric wall thickening (87.5%), with moderate enhancement (87.5%), mucosal enhancement (50%), or higher enhancement in portal phase than arterial phase (66.7%). Conclusion Post-ischemic strictures develop in the ileum, jejunum and colon after an interval of several weeks. In the colonic segment, strictures mainly occur in the “watershed zone.” Typical CT findings include a single area of concentric wall thickening of medium length (mean, 7.4 cm), with moderate and higher enhancement in portal phase and vasa recta prominence. PMID:29089826

HISTORICAL ANALYSIS OF THE RELATIONSHIP OF STREAMFLOW FLASHINESS WITH POPULATION DENSITY, IMPERVIOUSNESS, AND PERCENT URBAN LAND COVER IN THE MID-ATLANTIC REGION

EPA Science Inventory

Methods: This study is an examination of the relationship between stream flashiness and watershed-scale estimates of percent imperviousness, degree of urban development, and population density for 150 watersheds with long-term USGS National Water Information System (NWIS) histori...

Agricultural field reclamation utilizing native grass crop production

Treesearch

J. Cure

2013-01-01

Developing a method of agricultural field reclamation to native grasses in the Lower San Pedro Watershed could prove to be a valuable tool for educational and practical purposes. Agricultural field reclamation utilizing native grass crop production will address water table depletion, soil degradation and the economic viability of the communities within the watershed....

Invasive Species Guidebook for Department of Defense Installations in the Chesapeake Bay Watershed: Identification, Control, and Restoration

DTIC Science & Technology

2007-11-01

INSTALLATIONS IN THE CHESAPEAKE BAY WATERSHED IDENTIFICATION AND CONTROL METHODS Cogongrass ( Imperata cylindrica ) Description & Biology – A large...Crown vetch Coronilla varia MD, VA 14 Leafy spurge Euphorbia esula VA 15 Ground ivy Glechoma hederacea DC, MD, PA, VA, WV 17 Cogongrass Imperata

Curve numbers for long-term no-till corn and agricultural practices with high watershed infiltration

USDA-ARS?s Scientific Manuscript database

The Curve Number (CN) method is an engineering and land management tool for estimating surface runoff from rainstorms. There are few watershed runoff records available during which a no-till crop was growing and hence there are few field-measured CN values. We investigated CN under continuous long-...

Fire history, population, and calcium cycling in the current river watershed

Treesearch

Richard P. Guyette; Bruce E. Cutter

1997-01-01

Quantitative details about past anthropogenic fire regimes and their effects have been lacking in the central hardwood region. Here, we present fire scar chronologies from 23 oak-shortleaf pine (Quercus spp. and Pinus echinata Mill.) sites in the upper Current River watershed of the Missouri Ozarks. Dendrochronological methods were...

Upper Washita River experimental watersheds: Multiyear stability of soil water content profiles

USDA-ARS?s Scientific Manuscript database

Scaling in situ soil water content time series data to a large spatial domain is a key element of watershed environmental monitoring and modeling. The primary method of estimating and monitoring large-scale soil water content distributions is via in situ networks. It is critical to establish the s...

Understanding the effect of watershed characteristic on the runoff using SCS curve number

NASA Astrophysics Data System (ADS)

Damayanti, Frieta; Schneider, Karl

2015-04-01

Runoff modeling is a key component in watershed management. The temporal course and amount of runoff is a complex function of a multitude of parameters such as climate, soil, topography, land use, and water management. Against the background of the current rapid environmental change, which is due to both i) man-made changes (e.g. urban development, land use change, water management) as well as ii) changes in the natural systems (e.g. climate change), understanding and predicting the impacts of these changes upon the runoff is very important and affects the wellbeing of many people living in the watershed. A main tool for predictions is hydrologic models. Particularly process based models are the method of choice to assess the impact of land use and climate change. However, many regions which experience large changes in the watersheds can be described as rather data poor, which limits the applicability of such models. This is particularly also true for the Telomoyo Watershed (545 km2) which is located in southern part of Central Java province. The average annual rainfall of the study area reaches 2971 mm. Irrigated paddy field are the dominating land use (35%), followed by built-up area and dry land agriculture. The only available soil map is the FAO soil digital map of the world, which provides rather general soil information. A field survey accompanied by a lab analysis 65 soil samples of was carried out to provide more detailed soil texture information. The soil texture map is a key input in the SCS method to define hydrological soil groups. In the frame of our study on 'Integrated Analysis on Flood Risk of Telomoyo Watershed in Response to the Climate and Land Use Change' funded by the German Academic Exchange service (DAAD) we analyzed the sensitivity of the modeled runoff upon the choice of the method to estimate the CN values using the SCS-CN method. The goal of this study is to analyze the impact of different data sources on the curve numbers and the estimated runoff. CN values were estimated using the field measurements of soil textures for different combinations of land use and topography. To transfer the local soil texture measurements to the watershed domain a statistical analysis using the frequency distribution of the measured soil textures is applied and used to derive the effective CN value for a given land use, topography and soil texture combination. Since the curve numbers change as a function of parameter combinations, the effect of different methods to estimate the curve number upon the runoff is analyzed and compared to the straight forward method of using the data from the FAO soil map.

Dual-threshold segmentation using Arimoto entropy based on chaotic bee colony optimization

NASA Astrophysics Data System (ADS)

Li, Li

2018-03-01

In order to extract target from complex background more quickly and accurately, and to further improve the detection effect of defects, a method of dual-threshold segmentation using Arimoto entropy based on chaotic bee colony optimization was proposed. Firstly, the method of single-threshold selection based on Arimoto entropy was extended to dual-threshold selection in order to separate the target from the background more accurately. Then intermediate variables in formulae of Arimoto entropy dual-threshold selection was calculated by recursion to eliminate redundant computation effectively and to reduce the amount of calculation. Finally, the local search phase of artificial bee colony algorithm was improved by chaotic sequence based on tent mapping. The fast search for two optimal thresholds was achieved using the improved bee colony optimization algorithm, thus the search could be accelerated obviously. A large number of experimental results show that, compared with the existing segmentation methods such as multi-threshold segmentation method using maximum Shannon entropy, two-dimensional Shannon entropy segmentation method, two-dimensional Tsallis gray entropy segmentation method and multi-threshold segmentation method using reciprocal gray entropy, the proposed method can segment target more quickly and accurately with superior segmentation effect. It proves to be an instant and effective method for image segmentation.

Return period adjustment for runoff coefficients based on analysis in undeveloped Texas watersheds

USGS Publications Warehouse

Dhakal, Nirajan; Fang, Xing; Asquith, William H.; Cleveland, Theodore G.; Thompson, David B.

2013-01-01

The rational method for peak discharge (Qp) estimation was introduced in the 1880s. The runoff coefficient (C) is a key parameter for the rational method that has an implicit meaning of rate proportionality, and the C has been declared a function of the annual return period by various researchers. Rate-based runoff coefficients as a function of the return period, C(T), were determined for 36 undeveloped watersheds in Texas using peak discharge frequency from previously published regional regression equations and rainfall intensity frequency for return periods T of 2, 5, 10, 25, 50, and 100 years. The C(T) values and return period adjustments C(T)/C(T=10  year) determined in this study are most applicable to undeveloped watersheds. The return period adjustments determined for the Texas watersheds in this study and those extracted from prior studies of non-Texas data exceed values from well-known literature such as design manuals and textbooks. Most importantly, the return period adjustments exceed values currently recognized in Texas Department of Transportation design guidance when T>10  years.

Determination of The Water Catchment Area in Semarang City Using a Combination of Object Based Image Analysis (OBIA) Classification, InSAR and Geographic Information System (GIS) Methods Based On a High-Resolution SPOT 6 Image and Radar Imagery

NASA Astrophysics Data System (ADS)

Prasetyo, Yudo; Ardi Gunawan, Setyo; Maksum, Zia Ul

2016-11-01

Semarang is the biggest city in central Java-Indonesia which has a rapid and massive infrastructure development nowadays. In order to control water resources and flood, the local goverment has been built east and west flood canal in Kaligarang and West Semarang River. One of main problem in Semarang city is the lack of fresh water in dry season because ground water is not rechargeable well. Rechargeable groundwater ability depends on underground water recharge rate and catchment area condition. The objective of the study is to determine condition and classification of water catchment area in Semarang city. The catchment area conditions will be determine by five parameters as follows soil type, land use, slope, ground water potential and rainfall intensity. In this study, we use three methods approach to solve the problem which is segmentation classification to acquire land use classification from high resolution imagery using nearest neighborhood algorithm, Interferometric Synthetic Aperture Radar (SAR) to derive DTM from SAR Imagery and multi criteria weighting and spatial analysis using GIS method. There are three types optical image (ALOS PRISM, SPOT-6 and ALOS PALSAR) to calculate water catchment area condition in Semarang city. For final result, this research will divide the water catchment into six criteria as follows good, naturally normal, early critical, a little bit critical, critical and very critical condition. The result shows that water catchment area condition is in an early critical condition around 2607,523 Ha (33,17 %), naturally normal condition around 1507,674 Ha (19,18 %), a little bit critical condition around 1452,931 Ha (18,48 %), good with 1157,04 Ha (14,72 %), critical with 1058,639 Ha (13,47 %) and very critical with 75,0387 Ha (0,95 %). The distribution of water catchment area conditions in West and East Flood Canal have an irreguler pattern. In northern area of watershed consists of begin to critical, naturally normal and good condition. Meanwhile in southern area of watershed consists of a little bit critical, critical and very critical condition.

Identification of homogeneous regions for regionalization of watersheds by two-level self-organizing feature maps

NASA Astrophysics Data System (ADS)

Farsadnia, F.; Rostami Kamrood, M.; Moghaddam Nia, A.; Modarres, R.; Bray, M. T.; Han, D.; Sadatinejad, J.

2014-02-01

One of the several methods in estimating flood quantiles in ungauged or data-scarce watersheds is regional frequency analysis. Amongst the approaches to regional frequency analysis, different clustering techniques have been proposed to determine hydrologically homogeneous regions in the literature. Recently, Self-Organization feature Map (SOM), a modern hydroinformatic tool, has been applied in several studies for clustering watersheds. However, further studies are still needed with SOM on the interpretation of SOM output map for identifying hydrologically homogeneous regions. In this study, two-level SOM and three clustering methods (fuzzy c-mean, K-mean, and Ward's Agglomerative hierarchical clustering) are applied in an effort to identify hydrologically homogeneous regions in Mazandaran province watersheds in the north of Iran, and their results are compared with each other. Firstly the SOM is used to form a two-dimensional feature map. Next, the output nodes of the SOM are clustered by using unified distance matrix algorithm and three clustering methods to form regions for flood frequency analysis. The heterogeneity test indicates the four regions achieved by the two-level SOM and Ward approach after adjustments are sufficiently homogeneous. The results suggest that the combination of SOM and Ward is much better than the combination of either SOM and FCM or SOM and K-mean.

Mapping watershed integrity for the conterminous United States.

PubMed

Thornbrugh, Darren J; Leibowitz, Scott G; Hill, Ryan A; Weber, Marc H; Johnson, Zachary C; Olsen, Anthony R; Flotemersch, Joseph E; Stoddard, John L; Peck, David V

2018-02-01

Watershed integrity is the capacity of a watershed to support and maintain the full range of ecological processes and functions essential to sustainability. Using information from EPA's StreamCat dataset, we calculated and mapped an Index of Watershed Integrity (IWI) for 2.6 million watersheds in the conterminous US with first-order approximations of relationships between stressors and six watershed functions: hydrologic regulation, regulation of water chemistry, sediment regulation, hydrologic connectivity, temperature regulation, and habitat provision. Results show high integrity in the western US, intermediate integrity in the southern and eastern US, and the lowest integrity in the temperate plains and lower Mississippi Valley. Correlation between the six functional components was high ( r = 0.85-0.98). A related Index of Catchment Integrity (ICI) was developed using local drainages of individual stream segments (i.e., excluding upstream information). We evaluated the ability of the IWI and ICI to predict six continuous site-level indicators with regression analyses - three biological indicators and principal components derived from water quality, habitat, and combined water quality and habitat variables - using data from EPA's National Rivers and Streams Assessment. Relationships were highly significant, but the IWI only accounted for 1-12% of the variation in the four biological and habitat variables. The IWI accounted for over 25% of the variation in the water quality and combined principal components nationally, and 32-39% in the Northern and Southern Appalachians. We also used multinomial logistic regression to compare the IWI with the categorical forms of the three biological indicators. Results were consistent: we found positive associations but modest results. We compared how the IWI and ICI predicted the water quality PC relative to agricultural and urban land use. The IWI or ICI are the best predictors of the water quality PC for the CONUS and six of the nine ecoregions, but they only perform marginally better than agriculture in most instances. However, results suggest that agriculture would not be appropriate in all parts of the country, and the index is meant to be responsive to all stressors. The IWI in its present form (available through the StreamCat website; https://www.epa.gov/national-aquatic-resource-surveys/streamcat) could be useful for management efforts at multiple scales, especially when combined with information on site condition. The IWI could be improved by incorporating empirical or literature-derived relationships between functional components and stressors. However, limitations concerning the absence of data for certain stressors should be considered.

Flathead River Focus Watershed Coordinator, 2003-2004 Annual Report.

DOE Office of Scientific and Technical Information (OSTI.GOV)

DuCharme, Lynn

2004-06-01

The Bonneville Power Administration (BPA) has long been involved with funding of the Cooperative Habitat Protection and Improvement with Private Landowners program in accordance with the Northwest Power Planning Council's (NPPC) Fish & Wildlife Program (Section 7.7). Section 7.7B.1 requires the establishment of ''at least one model watershed coordinator selected by each representative state''. This project was initiated in 1997 with the purpose of fulfilling the NWPCC's watershed program within the Flathead River basin in western Montana. Currently, the Flathead watershed has been radically altered by hydropower and other land uses. With the construction of Hungry Horse, Bigfork and Kerrmore » dams, the Flathead River system has been divided into isolated populations. Bull trout have been listed as threatened by the US Fish and Wildlife Service and westslope cutthroat trout have been petitioned for listing. Many streams in the drainage have been destabilized during recent decades. Past legal and illegal species introductions are also causing problems. This project fosters in-kind, out-of-place mitigation to offset the impacts of hydroelectric power to 72 miles of the South Fork of the Flathead River and its tributaries upstream of Hungry Horse Dam. Key subbasins within the Flathead drainage, which are critical to native species restoration, are experiencing rapid changes in land ownership and management direction. Subdivision and residential development of agricultural and timber lands adjacent to waterways in the drainage pose one of the greatest threats to weak but recoverable stocks of trout species. Plum Creek Timber Company, a major landholder in the Flathead drainage is currently divesting itself of large tracks of its lakeshore and streamside holdings. Growth of small tract development throughout the area and its tributaries is occurring at a record rate. Immediate to short-term action is required to protect stream corridors through many of these areas if cost-effective recovery efforts are to be implemented. In order to adequately address the issues, other segments of society and other (non-BPA) funding sources must be incorporated into the solution. As stated in the 1994 Fish and Wildlife Program (section 7.7), ''Comprehensive watershed management should enhance and expedite implementation of actions by clearly identifying gaps in programs and knowledge, by striving over time to resolve conflicts, and by keying on activities that address priorities''. A watershed coordinator helps to initiate and facilitate efforts for addressing the issues mentioned above and pulling together a plan for mitigation. Local support is essential before local governments and individual citizens are going to allow government initiatives to be implemented.« less

Flathead River Focus Watershed Coordinator, 2002 Annual Report.

DOE Office of Scientific and Technical Information (OSTI.GOV)

DuCharme, Lynn

2003-04-01

The Bonneville Power Administration (BPA) has long been involved with funding of the Cooperative Habitat Protection and Improvement with Private Landowners program in accordance with the Northwest Power Planning Council's (NPPC) Fish & Wildlife Program (Section 7.7). Section 7.7B.1 requires the establishment of ''at least one model watershed coordinator selected by each representative state''. This project was initiated in 1997 with the purpose of fulfilling the NPPC's watershed program within the Flathead River basin in western Montana. Currently, the Flathead watershed has been radically altered by hydropower and other land uses. With the construction of Hungry Horse, Bigfork and Kerrmore » dams, the Flathead River system has been divided into isolated populations. Bull trout have been listed as threatened by the US Fish and Wildlife Service and westslope cutthroat trout have been petitioned for listing. Many streams in the drainage have been destabilized during recent decades. Past legal and illegal species introductions are also causing problems. This project fosters in-kind, out-of-place mitigation to offset the impacts of hydroelectric power to 72 miles of the South Fork of the Flathead River and its tributaries upstream of Hungry Horse Dam. Key subbasins within the Flathead drainage, which are critical to native species restoration, are experiencing rapid changes in land ownership and management direction. Subdivision and residential development of agricultural and timber lands adjacent to waterways in the drainage pose one of the greatest threats to weak but recoverable stocks of trout species. Plum Creek Timber Company, a major landholder in the Flathead drainage is currently divesting itself of large tracks of its lakeshore and streamside holdings. Growth of small tract development throughout the area and its tributaries is occurring at a record rate. Immediate to short-term action is required to protect stream corridors through many of these areas if cost-effective recovery efforts are to be implemented. In order to adequately address the issues, other segments of society and other (non-BPA) funding sources must be incorporated into the solution. As stated in the 1994 Fish and Wildlife Program (section 7.7), ''Comprehensive watershed management should enhance and expedite implementation of actions by clearly identifying gaps in programs and knowledge, by striving over time to resolve conflicts, and by keying on activities that address priorities''. A watershed coordinator helps to initiate and facilitate efforts for addressing the issues mentioned above and pulling together a plan for mitigation. Local support is essential before local governments and individual citizens are going to allow government initiatives to be implemented.« less

Flathead River Focus Watershed Coordinator, 2004-2005 Annual Report.

DOE Office of Scientific and Technical Information (OSTI.GOV)

DuCharme, Lynn

2006-06-26

The Bonneville Power Administration (BPA) has long been involved with funding of the Cooperative Habitat Protection and Improvement with Private Landowners program in accordance with the Northwest Power Planning Council's (NPPC) Fish & Wildlife Program (Section 7.7). Section 7.7B.1 requires the establishment of ''at least one model watershed coordinator selected by each representative state''. This project was initiated in 1997 with the purpose of fulfilling the NWPCC's watershed program within the Flathead River basin in western Montana. Currently, the Flathead watershed has been radically altered by hydropower and other land uses. With the construction of Hungry Horse, Bigfork and Kerrmore » dams, the Flathead River system has been divided into isolated populations. Bull trout have been listed as threatened by the US Fish and Wildlife Service and westslope cutthroat trout have been petitioned for listing. Many streams in the drainage have been destabilized during recent decades. Past legal and illegal species introductions are also causing problems. This project fosters in-kind, out-of-place mitigation to offset the impacts of hydroelectric power to 72 miles of the South Fork of the Flathead River and its tributaries upstream of Hungry Horse Dam. Key subbasins within the Flathead drainage, which are critical to native species restoration, are experiencing rapid changes in land ownership and management direction. Subdivision and residential development of agricultural and timber lands adjacent to waterways in the drainage pose one of the greatest threats to weak but recoverable stocks of trout species. Plum Creek Timber Company, a major landholder in the Flathead drainage is currently divesting itself of large tracks of its lakeshore and streamside holdings. Growth of small tract development throughout the area and its tributaries is occurring at a record rate. Immediate to short-term action is required to protect stream corridors through many of these areas if cost-effective recovery efforts are to be implemented. In order to adequately address the issues, other segments of society and other (non-BPA) funding sources must be incorporated into the solution. As stated in the 1994 Fish and Wildlife Program (section 7.7), ''Comprehensive watershed management should enhance and expedite implementation of actions by clearly identifying gaps in programs and knowledge, by striving over time to resolve conflicts, and by keying on activities that address priorities''. A watershed coordinator helps to initiate and facilitate efforts for addressing the issues mentioned above and pulling together a plan for mitigation. Local support is essential before local governments and individual citizens are going to allow government initiatives to be implemented.« less

Flathead River Focus Watershed Coordinator, 2005-2006 Annual Report.

DOE Office of Scientific and Technical Information (OSTI.GOV)

DuCharme, Lynn

2006-05-01

The Bonneville Power Administration (BPA) has long been involved with funding of the Cooperative Habitat Protection and Improvement with Private Landowners program in accordance with the Northwest Power Planning Council's (NPPC) Fish & Wildlife Program (Section 7.7). Section 7.7B.1 requires the establishment of ''at least one model watershed coordinator selected by each representative state''. This project was initiated in 1997 with the purpose of fulfilling the NWPCC's watershed program within the Flathead River basin in western Montana. Currently, the Flathead watershed has been radically altered by hydropower and other land uses. With the construction of Hungry Horse, Bigfork and Kerrmore » dams, the Flathead River system has been divided into isolated populations. Bull trout have been listed as threatened by the US Fish and Wildlife Service and westslope cutthroat trout have been petitioned for listing. Many streams in the drainage have been destabilized during recent decades. Past legal and illegal species introductions are also causing problems. This project fosters in-kind, out-of-place mitigation to offset the impacts of hydroelectric power to 72 miles of the South Fork of the Flathead River and its tributaries upstream of Hungry Horse Dam. Key subbasins within the Flathead drainage, which are critical to native species restoration, are experiencing rapid changes in land ownership and management direction. Subdivision and residential development of agricultural and timber lands adjacent to waterways in the drainage pose one of the greatest threats to weak but recoverable stocks of trout species. Plum Creek Timber Company, a major landholder in the Flathead drainage is currently divesting itself of large tracks of its lakeshore and streamside holdings. Growth of small tract development throughout the area and its tributaries is occurring at a record rate. Immediate to short-term action is required to protect stream corridors through many of these areas if cost-effective recovery efforts are to be implemented. In order to adequately address the issues, other segments of society and other (non-BPA) funding sources must be incorporated into the solution. As stated in the 1994 Fish and Wildlife Program (section 7.7), ''Comprehensive watershed management should enhance and expedite implementation of actions by clearly identifying gaps in programs and knowledge, by striving over time to resolve conflicts, and by keying on activities that address priorities''. A watershed coordinator helps to initiate and facilitate efforts for addressing the issues mentioned above and pulling together a plan for mitigation. Local support is essential before local governments and individual citizens are going to allow government initiatives to be implemented.« less

Fully automatic multi-atlas segmentation of CTA for partial volume correction in cardiac SPECT/CT

NASA Astrophysics Data System (ADS)

Liu, Qingyi; Mohy-ud-Din, Hassan; Boutagy, Nabil E.; Jiang, Mingyan; Ren, Silin; Stendahl, John C.; Sinusas, Albert J.; Liu, Chi

2017-05-01

Anatomical-based partial volume correction (PVC) has been shown to improve image quality and quantitative accuracy in cardiac SPECT/CT. However, this method requires manual segmentation of various organs from contrast-enhanced computed tomography angiography (CTA) data. In order to achieve fully automatic CTA segmentation for clinical translation, we investigated the most common multi-atlas segmentation methods. We also modified the multi-atlas segmentation method by introducing a novel label fusion algorithm for multiple organ segmentation to eliminate overlap and gap voxels. To evaluate our proposed automatic segmentation, eight canine 99mTc-labeled red blood cell SPECT/CT datasets that incorporated PVC were analyzed, using the leave-one-out approach. The Dice similarity coefficient of each organ was computed. Compared to the conventional label fusion method, our proposed label fusion method effectively eliminated gaps and overlaps and improved the CTA segmentation accuracy. The anatomical-based PVC of cardiac SPECT images with automatic multi-atlas segmentation provided consistent image quality and quantitative estimation of intramyocardial blood volume, as compared to those derived using manual segmentation. In conclusion, our proposed automatic multi-atlas segmentation method of CTAs is feasible, practical, and facilitates anatomical-based PVC of cardiac SPECT/CT images.

Automated tumor volumetry using computer-aided image segmentation.

PubMed

Gaonkar, Bilwaj; Macyszyn, Luke; Bilello, Michel; Sadaghiani, Mohammed Salehi; Akbari, Hamed; Atthiah, Mark A; Ali, Zarina S; Da, Xiao; Zhan, Yiqang; O'Rourke, Donald; Grady, Sean M; Davatzikos, Christos

2015-05-01

Accurate segmentation of brain tumors, and quantification of tumor volume, is important for diagnosis, monitoring, and planning therapeutic intervention. Manual segmentation is not widely used because of time constraints. Previous efforts have mainly produced methods that are tailored to a particular type of tumor or acquisition protocol and have mostly failed to produce a method that functions on different tumor types and is robust to changes in scanning parameters, resolution, and image quality, thereby limiting their clinical value. Herein, we present a semiautomatic method for tumor segmentation that is fast, accurate, and robust to a wide variation in image quality and resolution. A semiautomatic segmentation method based on the geodesic distance transform was developed and validated by using it to segment 54 brain tumors. Glioblastomas, meningiomas, and brain metastases were segmented. Qualitative validation was based on physician ratings provided by three clinical experts. Quantitative validation was based on comparing semiautomatic and manual segmentations. Tumor segmentations obtained using manual and automatic methods were compared quantitatively using the Dice measure of overlap. Subjective evaluation was performed by having human experts rate the computerized segmentations on a 0-5 rating scale where 5 indicated perfect segmentation. The proposed method addresses a significant, unmet need in the field of neuro-oncology. Specifically, this method enables clinicians to obtain accurate and reproducible tumor volumes without the need for manual segmentation. Copyright © 2015 AUR. Published by Elsevier Inc. All rights reserved.

Curve Number and Peakflow Responses Following the Cerro Grande Fire on a Small Watershed.

DOE Office of Scientific and Technical Information (OSTI.GOV)

Springer, E. P.; Hawkins, Richard H.

The Curve Number (CN) method is routinely used to estimate runoff and peakflows following forest fires, but there has been essentially no literature on the estimated value and temporal variation of CNs following wildland fires. In May 2000, the Cerro Grande Fire burned the headwaters of the major watersheds that cross Los Alamos National Laboratory, and a stream gauging network presented an opportunity to assess CNs following the fire. Analysis of rainfall-runoff events indicated that the pre-fire watershed response was complacent or limited watershed area contributed to runoff. The post-fire response indicated that the complacent behavior continued so the watershedmore » response was not dramatically changed. Peakflows did increase by 2 orders of magnitude following the fire, and this was hypothesized to be a function of increase in runoff volume and changes in watershed network allowing more efficient delivery of runoff. More observations and analyses following fires are needed to support definition of CNs for post-fire response and mitigation efforts.« less