Wavelet-based density estimation for noise reduction in plasma simulations using particles
NASA Astrophysics Data System (ADS)
van yen, Romain Nguyen; del-Castillo-Negrete, Diego; Schneider, Kai; Farge, Marie; Chen, Guangye
2010-04-01
For given computational resources, the accuracy of plasma simulations using particles is mainly limited by the noise due to limited statistical sampling in the reconstruction of the particle distribution function. A method based on wavelet analysis is proposed and tested to reduce this noise. The method, known as wavelet-based density estimation (WBDE), was previously introduced in the statistical literature to estimate probability densities given a finite number of independent measurements. Its novel application to plasma simulations can be viewed as a natural extension of the finite size particles (FSP) approach, with the advantage of estimating more accurately distribution functions that have localized sharp features. The proposed method preserves the moments of the particle distribution function to a good level of accuracy, has no constraints on the dimensionality of the system, does not require an a priori selection of a global smoothing scale, and its able to adapt locally to the smoothness of the density based on the given discrete particle data. Moreover, the computational cost of the denoising stage is of the same order as one time step of a FSP simulation. The method is compared with a recently proposed proper orthogonal decomposition based method, and it is tested with three particle data sets involving different levels of collisionality and interaction with external and self-consistent fields.
Wavelet-based density estimation for noise reduction in plasma simulations using particles
Nguyen van yen, Romain; Del-Castillo-Negrete, Diego B; Schneider, Kai; Farge, Marie; Chen, Guangye
2010-01-01
For given computational resources, one of the main limitations in the accuracy of plasma simulations using particles comes from the noise due to limited statistical sampling in the reconstruction of the particle distribution function. A method based on wavelet multiresolution analysis is proposed and tested to reduce this noise. The method, known as wavelet based density estimation (WBDE), was previously introduced in the statistical literature to estimate probability densities given a nite number of independent measurements. Its novel application to plasma simulations can be viewed as a natural extension of the nite size particles (FSP) approach, with the advantage of estimating more accurately distribution functions that have localized sharp features. The proposed method preserves the moments of the particle distribution function to a good level of accuracy, has no constraints on the dimensionality of the system, does not require an a priori selection of a global smoothing scale, and its able to adapt locally to the smoothness of the density based on the given discrete particle data. Most importantly, the computational cost of the denoising stage is of the same order as one timestep of a FSP simulation. The method is compared with a recently proposed proper orthogonal decomposition based method, and it is tested with particle data corresponding to strongly collisional, weakly collisional, and collisionless plasmas simulations.
Wavelet-based density estimation for noise reduction in plasma simulations using particles
NASA Astrophysics Data System (ADS)
Nguyen van Yen, R.; Del-Castillo-Negrete, D.; Schneider, K.; Farge, M.; Chen, G.
2009-11-01
A limitation of particle methods is the inherent noise caused by limited statistical sampling with finite number of particles. Thus, a key issue for the success of these methods is the development of noise reduction techniques in the reconstruction of the particle distribution function from discrete particle data. Here we propose and study a method based on wavelets, previously introduced in the statistical literature to estimate probability densities given a finite number of independent measurements. Its application to plasma simulations can be viewed as a natural extension of the finite size particles (FSP) approach, with the advantage of estimating more accurately distribution functions that have localized sharp features. Furthermore, the moments of the particle distribution function can be preserved with a good accuracy, and there is no constraint on the dimensionality of the system. It is shown that the computational cost of the denoising stage is of the same order as one time step of a FSP simulation. The wavelet method is compared with the recently introduced proper orthogonal decomposition approach in Ref. [D. del-Castillo-Negrete, et al., Phys. Plasma, 15 092308 (2008)].
Time Difference of Arrival (TDOA) Estimation Using Wavelet Based Denoising
1999-03-01
NAVAL POSTGRADUATE SCHOOL Monterey, California THESIS TIME DIFFERENCE OF ARRIVAL (TDOA) ESTIMATION USING WAVELET BASED DENOISING by Unal Aktas...4. TITLE AND SUBTITLE TIME DIFFERENCE OF ARRIVAL (TDOA) ESTIMATION USING WAVELET BASED DENOISING 6. AUTHOR(S) Unal Aktas 7...difference of arrival (TDOA) method. The wavelet transform is used to increase the accuracy of TDOA estimation. Several denoising techniques based on
Value-at-risk estimation with wavelet-based extreme value theory: Evidence from emerging markets
NASA Astrophysics Data System (ADS)
Cifter, Atilla
2011-06-01
This paper introduces wavelet-based extreme value theory (EVT) for univariate value-at-risk estimation. Wavelets and EVT are combined for volatility forecasting to estimate a hybrid model. In the first stage, wavelets are used as a threshold in generalized Pareto distribution, and in the second stage, EVT is applied with a wavelet-based threshold. This new model is applied to two major emerging stock markets: the Istanbul Stock Exchange (ISE) and the Budapest Stock Exchange (BUX). The relative performance of wavelet-based EVT is benchmarked against the Riskmetrics-EWMA, ARMA-GARCH, generalized Pareto distribution, and conditional generalized Pareto distribution models. The empirical results show that the wavelet-based extreme value theory increases predictive performance of financial forecasting according to number of violations and tail-loss tests. The superior forecasting performance of the wavelet-based EVT model is also consistent with Basel II requirements, and this new model can be used by financial institutions as well.
Wavelet-Based Speech Enhancement Using Time-Adapted Noise Estimation
NASA Astrophysics Data System (ADS)
Lei, Sheau-Fang; Tung, Ying-Kai
Spectral subtraction is commonly used for speech enhancement in a single channel system because of the simplicity of its implementation. However, this algorithm introduces perceptually musical noise while suppressing the background noise. We propose a wavelet-based approach in this paper for suppressing the background noise for speech enhancement in a single channel system. The wavelet packet transform, which emulates the human auditory system, is used to decompose the noisy signal into critical bands. Wavelet thresholding is then temporally adjusted with the noise power by time-adapted noise estimation. The proposed algorithm can efficiently suppress the noise while reducing speech distortion. Experimental results, including several objective measurements, show that the proposed wavelet-based algorithm outperforms spectral subtraction and other wavelet-based denoising approaches for speech enhancement for nonstationary noise environments.
Wavelet-based Poisson rate estimation using the Skellam distribution
NASA Astrophysics Data System (ADS)
Hirakawa, Keigo; Baqai, Farhan; Wolfe, Patrick J.
2009-02-01
Owing to the stochastic nature of discrete processes such as photon counts in imaging, real-world data measurements often exhibit heteroscedastic behavior. In particular, time series components and other measurements may frequently be assumed to be non-iid Poisson random variables, whose rate parameter is proportional to the underlying signal of interest-witness literature in digital communications, signal processing, astronomy, and magnetic resonance imaging applications. In this work, we show that certain wavelet and filterbank transform coefficients corresponding to vector-valued measurements of this type are distributed as sums and differences of independent Poisson counts, taking the so-called Skellam distribution. While exact estimates rarely admit analytical forms, we present Skellam mean estimators under both frequentist and Bayes models, as well as computationally efficient approximations and shrinkage rules, that may be interpreted as Poisson rate estimation method performed in certain wavelet/filterbank transform domains. This indicates a promising potential approach for denoising of Poisson counts in the above-mentioned applications.
Estimation of Modal Parameters Using a Wavelet-Based Approach
NASA Technical Reports Server (NTRS)
Lind, Rick; Brenner, Marty; Haley, Sidney M.
1997-01-01
Modal stability parameters are extracted directly from aeroservoelastic flight test data by decomposition of accelerometer response signals into time-frequency atoms. Logarithmic sweeps and sinusoidal pulses are used to generate DAST closed loop excitation data. Novel wavelets constructed to extract modal damping and frequency explicitly from the data are introduced. The so-called Haley and Laplace wavelets are used to track time-varying modal damping and frequency in a matching pursuit algorithm. Estimation of the trend to aeroservoelastic instability is demonstrated successfully from analysis of the DAST data.
WAVELET-BASED BAYESIAN ESTIMATION OF PARTIALLY LINEAR REGRESSION MODELSWITH LONG MEMORY ERRORS
Ko, Kyungduk; Qu, Leming; Vannucci, Marina
2013-01-01
In this paper we focus on partially linear regression models with long memory errors, and propose a wavelet-based Bayesian procedure that allows the simultaneous estimation of the model parameters and the nonparametric part of the model. Employing discrete wavelet transforms is crucial in order to simplify the dense variance-covariance matrix of the long memory error. We achieve a fully Bayesian inference by adopting a Metropolis algorithm within a Gibbs sampler. We evaluate the performances of the proposed method on simulated data. In addition, we present an application to Northern hemisphere temperature data, a benchmark in the long memory literature. PMID:23946613
Metwally, Khaled; Lefevre, Emmanuelle; Baron, Cécile; Zheng, Rui; Pithioux, Martine; Lasaygues, Philippe
2016-02-01
When assessing ultrasonic measurements of material parameters, the signal processing is an important part of the inverse problem. Measurements of thickness, ultrasonic wave velocity and mass density are required for such assessments. This study investigates the feasibility and the robustness of a wavelet-based processing (WBP) method based on a Jaffard-Meyer algorithm for calculating these parameters simultaneously and independently, using one single ultrasonic signal in the reflection mode. The appropriate transmitted incident wave, correlated with the mathematical properties of the wavelet decomposition, was determined using a adapted identification procedure to build a mathematically equivalent model for the electro-acoustic system. The method was tested on three groups of samples (polyurethane resin, bone and wood) using one 1-MHz transducer. For thickness and velocity measurements, the WBP method gave a relative error lower than 1.5%. The relative errors in the mass density measurements ranged between 0.70% and 2.59%. Despite discrepancies between manufactured and biological samples, the results obtained on the three groups of samples using the WBP method in the reflection mode were remarkably consistent, indicating that it is a reliable and efficient means of simultaneously assessing the thickness and the velocity of the ultrasonic wave propagating in the medium, and the apparent mass density of material.
Motion estimation using low-band-shift method for wavelet-based moving-picture coding.
Park, H W; Kim, H S
2000-01-01
The discrete wavelet transform (DWT) has several advantages of multiresolution analysis and subband decomposition, which has been successfully used in image processing. However, the shift-variant property is intrinsic due to the decimation process of the wavelet transform, and it makes the wavelet-domain motion estimation and compensation inefficient. To overcome the shift-variant property, a low-band-shift method is proposed and a motion estimation and compensation method in the wavelet-domain is presented. The proposed method has a superior performance to the conventional motion estimation methods in terms of the mean absolute difference (MAD) as well as the subjective quality. The proposed method can be a model method for the motion estimation in wavelet-domain just like the full-search block matching in the spatial domain.
Wavelet-based analysis and power law classification of C/NOFS high-resolution electron density data
NASA Astrophysics Data System (ADS)
Rino, C. L.; Carrano, C. S.; Roddy, Patrick
2014-08-01
This paper applies new wavelet-based analysis procedures to low Earth-orbiting satellite measurements of equatorial ionospheric structure. The analysis was applied to high-resolution data from 285 Communications/Navigation Outage Forecasting System (C/NOFS) satellite orbits sampling the postsunset period at geomagnetic equatorial latitudes. The data were acquired during a period of progressively intensifying equatorial structure. The sampled altitude range varied from 400 to 800 km. The varying scan velocity remained within 20° of the cross-field direction. Time-to-space interpolation generated uniform samples at approximately 8 m. A maximum segmentation length that supports stochastic structure characterization was identified. A two-component inverse power law model was fit to scale spectra derived from each segment together with a goodness-of-fit measure. Inverse power law parameters derived from the scale spectra were used to classify the scale spectra by type. The largest category was characterized by a single inverse power law with a mean spectral index somewhat larger than 2. No systematic departure from the inverse power law was observed to scales greater than 100 km. A small subset of the most highly disturbed passes at the lowest sampled altitudes could be categorized by two-component power law spectra with a range of break scales from less than 100 m to several kilometers. The results are discussed within the context of other analyses of in situ data and spectral characteristics used for scintillation analyses.
Information geometric density estimation
NASA Astrophysics Data System (ADS)
Sun, Ke; Marchand-Maillet, Stéphane
2015-01-01
We investigate kernel density estimation where the kernel function varies from point to point. Density estimation in the input space means to find a set of coordinates on a statistical manifold. This novel perspective helps to combine efforts from information geometry and machine learning to spawn a family of density estimators. We present example models with simulations. We discuss the principle and theory of such density estimation.
Numerical estimation of densities
NASA Astrophysics Data System (ADS)
Ascasibar, Y.; Binney, J.
2005-01-01
We present a novel technique, dubbed FIESTAS, to estimate the underlying density field from a discrete set of sample points in an arbitrary multidimensional space. FIESTAS assigns a volume to each point by means of a binary tree. Density is then computed by integrating over an adaptive kernel. As a first test, we construct several Monte Carlo realizations of a Hernquist profile and recover the particle density in both real and phase space. At a given point, Poisson noise causes the unsmoothed estimates to fluctuate by a factor of ~2 regardless of the number of particles. This spread can be reduced to about 1dex (~26 per cent) by our smoothing procedure. The density range over which the estimates are unbiased widens as the particle number increases. Our tests show that real-space densities obtained with an SPH kernel are significantly more biased than those yielded by FIESTAS. In phase space, about 10 times more particles are required in order to achieve a similar accuracy. As a second application we have estimated phase-space densities in a dark matter halo from a cosmological simulation. We confirm the results of Arad, Dekel & Klypin that the highest values of f are all associated with substructure rather than the main halo, and that the volume function v(f) ~f-2.5 over about four orders of magnitude in f. We show that a modified version of the toy model proposed by Arad et al. explains this result and suggests that the departures of v(f) from power-law form are not mere numerical artefacts. We conclude that our algorithm accurately measures the phase-space density up to the limit where discreteness effects render the simulation itself unreliable. Computationally, FIESTAS is orders of magnitude faster than the method based on Delaunay tessellation that Arad et al. employed, making it practicable to recover smoothed density estimates for sets of 109 points in six dimensions.
Patel, Ameera X; Bullmore, Edward T
2016-11-15
Connectome mapping using techniques such as functional magnetic resonance imaging (fMRI) has become a focus of systems neuroscience. There remain many statistical challenges in analysis of functional connectivity and network architecture from BOLD fMRI multivariate time series. One key statistic for any time series is its (effective) degrees of freedom, df, which will generally be less than the number of time points (or nominal degrees of freedom, N). If we know the df, then probabilistic inference on other fMRI statistics, such as the correlation between two voxel or regional time series, is feasible. However, we currently lack good estimators of df in fMRI time series, especially after the degrees of freedom of the "raw" data have been modified substantially by denoising algorithms for head movement. Here, we used a wavelet-based method both to denoise fMRI data and to estimate the (effective) df of the denoised process. We show that seed voxel correlations corrected for locally variable df could be tested for false positive connectivity with better control over Type I error and greater specificity of anatomical mapping than probabilistic connectivity maps using the nominal degrees of freedom. We also show that wavelet despiked statistics can be used to estimate all pairwise correlations between a set of regional nodes, assign a P value to each edge, and then iteratively add edges to the graph in order of increasing P. These probabilistically thresholded graphs are likely more robust to regional variation in head movement effects than comparable graphs constructed by thresholding correlations. Finally, we show that time-windowed estimates of df can be used for probabilistic connectivity testing or dynamic network analysis so that apparent changes in the functional connectome are appropriately corrected for the effects of transient noise bursts. Wavelet despiking is both an algorithm for fMRI time series denoising and an estimator of the (effective) df of denoised
Airborne Crowd Density Estimation
NASA Astrophysics Data System (ADS)
Meynberg, O.; Kuschk, G.
2013-10-01
This paper proposes a new method for estimating human crowd densities from aerial imagery. Applications benefiting from an accurate crowd monitoring system are mainly found in the security sector. Normally crowd density estimation is done through in-situ camera systems mounted on high locations although this is not appropriate in case of very large crowds with thousands of people. Using airborne camera systems in these scenarios is a new research topic. Our method uses a preliminary filtering of the whole image space by suitable and fast interest point detection resulting in a number of image regions, possibly containing human crowds. Validation of these candidates is done by transforming the corresponding image patches into a low-dimensional and discriminative feature space and classifying the results using a support vector machine (SVM). The feature space is spanned by texture features computed by applying a Gabor filter bank with varying scale and orientation to the image patches. For evaluation, we use 5 different image datasets acquired by the 3K+ aerial camera system of the German Aerospace Center during real mass events like concerts or football games. To evaluate the robustness and generality of our method, these datasets are taken from different flight heights between 800 m and 1500 m above ground (keeping a fixed focal length) and varying daylight and shadow conditions. The results of our crowd density estimation are evaluated against a reference data set obtained by manually labeling tens of thousands individual persons in the corresponding datasets and show that our method is able to estimate human crowd densities in challenging realistic scenarios.
Density Estimation with Mercer Kernels
NASA Technical Reports Server (NTRS)
Macready, William G.
2003-01-01
We present a new method for density estimation based on Mercer kernels. The density estimate can be understood as the density induced on a data manifold by a mixture of Gaussians fit in a feature space. As is usual, the feature space and data manifold are defined with any suitable positive-definite kernel function. We modify the standard EM algorithm for mixtures of Gaussians to infer the parameters of the density. One benefit of the approach is it's conceptual simplicity, and uniform applicability over many different types of data. Preliminary results are presented for a number of simple problems.
NASA Technical Reports Server (NTRS)
Jameson, Leland
1996-01-01
Wavelets can provide a basis set in which the basis functions are constructed by dilating and translating a fixed function known as the mother wavelet. The mother wavelet can be seen as a high pass filter in the frequency domain. The process of dilating and expanding this high-pass filter can be seen as altering the frequency range that is 'passed' or detected. The process of translation moves this high-pass filter throughout the domain, thereby providing a mechanism to detect the frequencies or scales of information at every location. This is exactly the type of information that is needed for effective grid generation. This paper provides motivation to use wavelets for grid generation in addition to providing the final product: source code for wavelet-based grid generation.
Estimation of coastal density gradients
NASA Astrophysics Data System (ADS)
Howarth, M. J.; Palmer, M. R.; Polton, J. A.; O'Neill, C. K.
2012-04-01
Density gradients in coastal regions with significant freshwater input are large and variable and are a major control of nearshore circulation. However their measurement is difficult, especially where the gradients are largest close to the coast, with significant uncertainties because of a variety of factors - spatial and time scales are small, tidal currents are strong and water depths shallow. Whilst temperature measurements are relatively straightforward, measurements of salinity (the dominant control of spatial variability) can be less reliable in turbid coastal waters. Liverpool Bay has strong tidal mixing and receives fresh water principally from the Dee, Mersey, Ribble and Conwy estuaries, each with different catchment influences. Horizontal and vertical density gradients are variable both in space and time. The water column stratifies intermittently. A Coastal Observatory has been operational since 2002 with regular (quasi monthly) CTD surveys on a 9 km grid, an situ station, an instrumented ferry travelling between Birkenhead and Dublin and a shore-based HF radar system measuring surface currents and waves. These measurements are complementary, each having different space-time characteristics. For coastal gradients the ferry is particularly useful since measurements are made right from the mouth of Mersey. From measurements at the in situ site alone density gradients can only be estimated from the tidal excursion. A suite of coupled physical, wave and ecological models are run in association with these measurements. The models, here on a 1.8 km grid, enable detailed estimation of nearshore density gradients, provided appropriate river run-off data are available. Examples are presented of the density gradients estimated from the different measurements and models, together with accuracies and uncertainties, showing that systematic time series measurements within a few kilometres of the coast are a high priority. (Here gliders are an exciting prospect for
Wavelet-based functional mixed models
Morris, Jeffrey S.; Carroll, Raymond J.
2009-01-01
Summary Increasingly, scientific studies yield functional data, in which the ideal units of observation are curves and the observed data consist of sets of curves that are sampled on a fine grid. We present new methodology that generalizes the linear mixed model to the functional mixed model framework, with model fitting done by using a Bayesian wavelet-based approach. This method is flexible, allowing functions of arbitrary form and the full range of fixed effects structures and between-curve covariance structures that are available in the mixed model framework. It yields nonparametric estimates of the fixed and random-effects functions as well as the various between-curve and within-curve covariance matrices. The functional fixed effects are adaptively regularized as a result of the non-linear shrinkage prior that is imposed on the fixed effects’ wavelet coefficients, and the random-effect functions experience a form of adaptive regularization because of the separately estimated variance components for each wavelet coefficient. Because we have posterior samples for all model quantities, we can perform pointwise or joint Bayesian inference or prediction on the quantities of the model. The adaptiveness of the method makes it especially appropriate for modelling irregular functional data that are characterized by numerous local features like peaks. PMID:19759841
Adaptive density estimator for galaxy surveys
NASA Astrophysics Data System (ADS)
Saar, Enn
2016-10-01
Galaxy number or luminosity density serves as a basis for many structure classification algorithms. Several methods are used to estimate this density. Among them kernel methods have probably the best statistical properties and allow also to estimate the local sample errors of the estimate. We introduce a kernel density estimator with an adaptive data-driven anisotropic kernel, describe its properties and demonstrate the wealth of additional information it gives us about the local properties of the galaxy distribution.
Wavelets based on Hermite cubic splines
NASA Astrophysics Data System (ADS)
Cvejnová, Daniela; Černá, Dana; Finěk, Václav
2016-06-01
In 2000, W. Dahmen et al. designed biorthogonal multi-wavelets adapted to the interval [0,1] on the basis of Hermite cubic splines. In recent years, several more simple constructions of wavelet bases based on Hermite cubic splines were proposed. We focus here on wavelet bases with respect to which both the mass and stiffness matrices are sparse in the sense that the number of nonzero elements in any column is bounded by a constant. Then, a matrix-vector multiplication in adaptive wavelet methods can be performed exactly with linear complexity for any second order differential equation with constant coefficients. In this contribution, we shortly review these constructions and propose a new wavelet which leads to improved Riesz constants. Wavelets have four vanishing wavelet moments.
Dependence and risk assessment for oil prices and exchange rate portfolios: A wavelet based approach
NASA Astrophysics Data System (ADS)
Aloui, Chaker; Jammazi, Rania
2015-10-01
In this article, we propose a wavelet-based approach to accommodate the stylized facts and complex structure of financial data, caused by frequent and abrupt changes of markets and noises. Specifically, we show how the combination of both continuous and discrete wavelet transforms with traditional financial models helps improve portfolio's market risk assessment. In the empirical stage, three wavelet-based models (wavelet-EGARCH with dynamic conditional correlations, wavelet-copula, and wavelet-extreme value) are considered and applied to crude oil price and US dollar exchange rate data. Our findings show that the wavelet-based approach provides an effective and powerful tool for detecting extreme moments and improving the accuracy of VaR and Expected Shortfall estimates of oil-exchange rate portfolios after noise is removed from the original data.
Wavelet-based denoising using local Laplace prior
NASA Astrophysics Data System (ADS)
Rabbani, Hossein; Vafadust, Mansur; Selesnick, Ivan
2007-09-01
Although wavelet-based image denoising is a powerful tool for image processing applications, relatively few publications have addressed so far wavelet-based video denoising. The main reason is that the standard 3-D data transforms do not provide useful representations with good energy compaction property, for most video data. For example, the multi-dimensional standard separable discrete wavelet transform (M-D DWT) mixes orientations and motions in its subbands, and produces the checkerboard artifacts. So, instead of M-D DWT, usually oriented transforms suchas multi-dimensional complex wavelet transform (M-D DCWT) are proposed for video processing. In this paper we use a Laplace distribution with local variance to model the statistical properties of noise-free wavelet coefficients. This distribution is able to simultaneously model the heavy-tailed and intrascale dependency properties of wavelets. Using this model, simple shrinkage functions are obtained employing maximum a posteriori (MAP) and minimum mean squared error (MMSE) estimators. These shrinkage functions are proposed for video denoising in DCWT domain. The simulation results shows that this simple denoising method has impressive performance visually and quantitatively.
Topics in global convergence of density estimates
NASA Technical Reports Server (NTRS)
Devroye, L.
1982-01-01
The problem of estimating a density f on R sup d from a sample Xz(1),...,X(n) of independent identically distributed random vectors is critically examined, and some recent results in the field are reviewed. The following statements are qualified: (1) For any sequence of density estimates f(n), any arbitrary slow rate of convergence to 0 is possible for E(integral/f(n)-fl); (2) In theoretical comparisons of density estimates, integral/f(n)-f/ should be used and not integral/f(n)-f/sup p, p 1; and (3) For most reasonable nonparametric density estimates, either there is convergence of integral/f(n)-f/ (and then the convergence is in the strongest possible sense for all f), or there is no convergence (even in the weakest possible sense for a single f). There is no intermediate situation.
Multivariate Density Estimation and Remote Sensing
NASA Technical Reports Server (NTRS)
Scott, D. W.
1983-01-01
Current efforts to develop methods and computer algorithms to effectively represent multivariate data commonly encountered in remote sensing applications are described. While this may involve scatter diagrams, multivariate representations of nonparametric probability density estimates are emphasized. The density function provides a useful graphical tool for looking at data and a useful theoretical tool for classification. This approach is called a thunderstorm data analysis.
Adaptively wavelet-based image denoising algorithm with edge preserving
NASA Astrophysics Data System (ADS)
Tan, Yihua; Tian, Jinwen; Liu, Jian
2006-02-01
A new wavelet-based image denoising algorithm, which exploits the edge information hidden in the corrupted image, is presented. Firstly, a canny-like edge detector identifies the edges in each subband. Secondly, multiplying the wavelet coefficients in neighboring scales is implemented to suppress the noise while magnifying the edge information, and the result is utilized to exclude the fake edges. The isolated edge pixel is also identified as noise. Unlike the thresholding method, after that we use local window filter in the wavelet domain to remove noise in which the variance estimation is elaborated to utilize the edge information. This method is adaptive to local image details, and can achieve better performance than the methods of state of the art.
Nonparametric entropy estimation using kernel densities.
Lake, Douglas E
2009-01-01
The entropy of experimental data from the biological and medical sciences provides additional information over summary statistics. Calculating entropy involves estimates of probability density functions, which can be effectively accomplished using kernel density methods. Kernel density estimation has been widely studied and a univariate implementation is readily available in MATLAB. The traditional definition of Shannon entropy is part of a larger family of statistics, called Renyi entropy, which are useful in applications that require a measure of the Gaussianity of data. Of particular note is the quadratic entropy which is related to the Friedman-Tukey (FT) index, a widely used measure in the statistical community. One application where quadratic entropy is very useful is the detection of abnormal cardiac rhythms, such as atrial fibrillation (AF). Asymptotic and exact small-sample results for optimal bandwidth and kernel selection to estimate the FT index are presented and lead to improved methods for entropy estimation.
Wavelet-based acoustic recognition of aircraft
Dress, W.B.; Kercel, S.W.
1994-09-01
We describe a wavelet-based technique for identifying aircraft from acoustic emissions during take-off and landing. Tests show that the sensor can be a single, inexpensive hearing-aid microphone placed close to the ground the paper describes data collection, analysis by various technique, methods of event classification, and extraction of certain physical parameters from wavelet subspace projections. The primary goal of this paper is to show that wavelet analysis can be used as a divide-and-conquer first step in signal processing, providing both simplification and noise filtering. The idea is to project the original signal onto the orthogonal wavelet subspaces, both details and approximations. Subsequent analysis, such as system identification, nonlinear systems analysis, and feature extraction, is then carried out on the various signal subspaces.
Wavelet-based SAR image despeckling and information extraction, using particle filter.
Gleich, Dusan; Datcu, Mihai
2009-10-01
This paper proposes a new-wavelet-based synthetic aperture radar (SAR) image despeckling algorithm using the sequential Monte Carlo method. A model-based Bayesian approach is proposed. This paper presents two methods for SAR image despeckling. The first method, called WGGPF, models a prior with Generalized Gaussian (GG) probability density function (pdf) and the second method, called WGMPF, models prior with a Generalized Gaussian Markov random field (GGMRF). The likelihood pdf is modeled using a Gaussian pdf. The GGMRF model is used because it enables texture parameter estimation. The prior is modeled using GG pdf, when texture parameters are not needed. A particle filter is used for drawing particles from the prior for different shape parameters of GG pdf. When the GGMRF prior is used, the particles are drawn from prior in order to estimate noise-free wavelet coefficients and for those coefficients the texture parameter is changed in order to obtain the best textural parameters. The texture parameters are changed for a predefined set of shape parameters of GGMRF. The particles with the highest weights represents the final noise-free estimate with corresponding textural parameters. The despeckling algorithms are compared with the state-of-the-art methods using synthetic and real SAR data. The experimental results show that the proposed despeckling algorithms efficiently remove noise and proposed methods are comparable with the state-of-the-art methods regarding objective measurements. The proposed WGMPF preserves textures of the real, high-resolution SAR images well.
Discrimination of walking patterns using wavelet-based fractal analysis.
Sekine, Masaki; Tamura, Toshiyo; Akay, Metin; Fujimoto, Toshiro; Togawa, Tatsuo; Fukui, Yasuhiro
2002-09-01
In this paper, we attempted to classify the acceleration signals for walking along a corridor and on stairs by using the wavelet-based fractal analysis method. In addition, the wavelet-based fractal analysis method was used to evaluate the gait of elderly subjects and patients with Parkinson's disease. The triaxial acceleration signals were measured close to the center of gravity of the body while the subject walked along a corridor and up and down stairs continuously. Signal measurements were recorded from 10 healthy young subjects and 11 elderly subjects. For comparison, two patients with Parkinson's disease participated in the level walking. The acceleration signal in each direction was decomposed to seven detailed signals at different wavelet scales by using the discrete wavelet transform. The variances of detailed signals at scales 7 to 1 were calculated. The fractal dimension of the acceleration signal was then estimated from the slope of the variance progression. The fractal dimensions were significantly different among the three types of walking for individual subjects (p < 0.01) and showed a high reproducibility. Our results suggest that the fractal dimensions are effective for classifying the walking types. Moreover, the fractal dimensions were significantly higher for the elderly subjects than for the young subjects (p < 0.01). For the patients with Parkinson's disease, the fractal dimensions tended to be higher than those of healthy subjects. These results suggest that the acceleration signals change into a more complex pattern with aging and with Parkinson's disease, and the fractal dimension can be used to evaluate the gait of elderly subjects and patients with Parkinson's disease.
Estimating animal population density using passive acoustics.
Marques, Tiago A; Thomas, Len; Martin, Stephen W; Mellinger, David K; Ward, Jessica A; Moretti, David J; Harris, Danielle; Tyack, Peter L
2013-05-01
Reliable estimation of the size or density of wild animal populations is very important for effective wildlife management, conservation and ecology. Currently, the most widely used methods for obtaining such estimates involve either sighting animals from transect lines or some form of capture-recapture on marked or uniquely identifiable individuals. However, many species are difficult to sight, and cannot be easily marked or recaptured. Some of these species produce readily identifiable sounds, providing an opportunity to use passive acoustic data to estimate animal density. In addition, even for species for which other visually based methods are feasible, passive acoustic methods offer the potential for greater detection ranges in some environments (e.g. underwater or in dense forest), and hence potentially better precision. Automated data collection means that surveys can take place at times and in places where it would be too expensive or dangerous to send human observers. Here, we present an overview of animal density estimation using passive acoustic data, a relatively new and fast-developing field. We review the types of data and methodological approaches currently available to researchers and we provide a framework for acoustics-based density estimation, illustrated with examples from real-world case studies. We mention moving sensor platforms (e.g. towed acoustics), but then focus on methods involving sensors at fixed locations, particularly hydrophones to survey marine mammals, as acoustic-based density estimation research to date has been concentrated in this area. Primary among these are methods based on distance sampling and spatially explicit capture-recapture. The methods are also applicable to other aquatic and terrestrial sound-producing taxa. We conclude that, despite being in its infancy, density estimation based on passive acoustic data likely will become an important method for surveying a number of diverse taxa, such as sea mammals, fish, birds
Estimating animal population density using passive acoustics
Marques, Tiago A; Thomas, Len; Martin, Stephen W; Mellinger, David K; Ward, Jessica A; Moretti, David J; Harris, Danielle; Tyack, Peter L
2013-01-01
Reliable estimation of the size or density of wild animal populations is very important for effective wildlife management, conservation and ecology. Currently, the most widely used methods for obtaining such estimates involve either sighting animals from transect lines or some form of capture-recapture on marked or uniquely identifiable individuals. However, many species are difficult to sight, and cannot be easily marked or recaptured. Some of these species produce readily identifiable sounds, providing an opportunity to use passive acoustic data to estimate animal density. In addition, even for species for which other visually based methods are feasible, passive acoustic methods offer the potential for greater detection ranges in some environments (e.g. underwater or in dense forest), and hence potentially better precision. Automated data collection means that surveys can take place at times and in places where it would be too expensive or dangerous to send human observers. Here, we present an overview of animal density estimation using passive acoustic data, a relatively new and fast-developing field. We review the types of data and methodological approaches currently available to researchers and we provide a framework for acoustics-based density estimation, illustrated with examples from real-world case studies. We mention moving sensor platforms (e.g. towed acoustics), but then focus on methods involving sensors at fixed locations, particularly hydrophones to survey marine mammals, as acoustic-based density estimation research to date has been concentrated in this area. Primary among these are methods based on distance sampling and spatially explicit capture-recapture. The methods are also applicable to other aquatic and terrestrial sound-producing taxa. We conclude that, despite being in its infancy, density estimation based on passive acoustic data likely will become an important method for surveying a number of diverse taxa, such as sea mammals, fish, birds
Mean Density Estimation derived from Satellite Constellations
NASA Astrophysics Data System (ADS)
Li, A.; Close, S.
2015-12-01
With the advent of nanosatellite constellations, we define here a new method to derive neutral densities of the lower thermosphere from multiple similar platforms travelling through same regions of space. Because of similar orbits, the satellites are expected to encounter similar mean neutral densities and hence experience similar drag if their drag coefficients are equivalent. Utilizing free molecular flow theory to bound the minimum possible drag coefficient possible and order statistics to give a statistical picture of the distribution, we are able to estimate the neutral density alongside its associated error bounds. Data sources for this methodology can either be from already established Two Line Elements (TLEs) or from raw data sources, in which an additional filtering step needs to be performed to estimate relevant parameters. The effects of error in the filtering step of the methodology are also discussed and can be removed if the error distribution is Gaussian in nature. This method does not depend on prior models of the atmosphere, but instead is based upon physics models of simple shapes in free molecular flow. With a constellation of 10 satellites, we can achieve a standard deviation of roughly 4% on the estimated mean neutral density. As additional satellites are included in the estimation scheme, the result converges towards the lower limit of the achievable drag coefficient, and accuracy becomes limited by the quality of the ranging measurements and the probability of the accommodation coefficient. Data is provided courtesy of Planet Labs and comparisons are made to existing atmospheric models such as NRLMSISE-00 and JB2006.
Wavelet-based analysis of circadian behavioral rhythms.
Leise, Tanya L
2015-01-01
The challenging problems presented by noisy biological oscillators have led to the development of a great variety of methods for accurately estimating rhythmic parameters such as period and amplitude. This chapter focuses on wavelet-based methods, which can be quite effective for assessing how rhythms change over time, particularly if time series are at least a week in length. These methods can offer alternative views to complement more traditional methods of evaluating behavioral records. The analytic wavelet transform can estimate the instantaneous period and amplitude, as well as the phase of the rhythm at each time point, while the discrete wavelet transform can extract the circadian component of activity and measure the relative strength of that circadian component compared to those in other frequency bands. Wavelet transforms do not require the removal of noise or trend, and can, in fact, be effective at removing noise and trend from oscillatory time series. The Fourier periodogram and spectrogram are reviewed, followed by descriptions of the analytic and discrete wavelet transforms. Examples illustrate application of each method and their prior use in chronobiology is surveyed. Issues such as edge effects, frequency leakage, and implications of the uncertainty principle are also addressed.
Wavelet-based approach to character skeleton.
You, Xinge; Tang, Yuan Yan
2007-05-01
Character skeleton plays a significant role in character recognition. The strokes of a character may consist of two regions, i.e., singular and regular regions. The intersections and junctions of the strokes belong to singular region, while the straight and smooth parts of the strokes are categorized to regular region. Therefore, a skeletonization method requires two different processes to treat the skeletons in theses two different regions. All traditional skeletonization algorithms are based on the symmetry analysis technique. The major problems of these methods are as follows. 1) The computation of the primary skeleton in the regular region is indirect, so that its implementation is sophisticated and costly. 2) The extracted skeleton cannot be exactly located on the central line of the stroke. 3) The captured skeleton in the singular region may be distorted by artifacts and branches. To overcome these problems, a novel scheme of extracting the skeleton of character based on wavelet transform is presented in this paper. This scheme consists of two main steps, namely: a) extraction of primary skeleton in the regular region and b) amendment processing of the primary skeletons and connection of them in the singular region. A direct technique is used in the first step, where a new wavelet-based symmetry analysis is developed for finding the central line of the stroke directly. A novel method called smooth interpolation is designed in the second step, where a smooth operation is applied to the primary skeleton, and, thereafter, the interpolation compensation technique is proposed to link the primary skeleton, so that the skeleton in the singular region can be produced. Experiments are conducted and positive results are achieved, which show that the proposed skeletonization scheme is applicable to not only binary image but also gray-level image, and the skeleton is robust against noise and affine transform.
Bird population density estimated from acoustic signals
Dawson, D.K.; Efford, M.G.
2009-01-01
Many animal species are detected primarily by sound. Although songs, calls and other sounds are often used for population assessment, as in bird point counts and hydrophone surveys of cetaceans, there are few rigorous methods for estimating population density from acoustic data. 2. The problem has several parts - distinguishing individuals, adjusting for individuals that are missed, and adjusting for the area sampled. Spatially explicit capture-recapture (SECR) is a statistical methodology that addresses jointly the second and third parts of the problem. We have extended SECR to use uncalibrated information from acoustic signals on the distance to each source. 3. We applied this extension of SECR to data from an acoustic survey of ovenbird Seiurus aurocapilla density in an eastern US deciduous forest with multiple four-microphone arrays. We modelled average power from spectrograms of ovenbird songs measured within a window of 0??7 s duration and frequencies between 4200 and 5200 Hz. 4. The resulting estimates of the density of singing males (0??19 ha -1 SE 0??03 ha-1) were consistent with estimates of the adult male population density from mist-netting (0??36 ha-1 SE 0??12 ha-1). The fitted model predicts sound attenuation of 0??11 dB m-1 (SE 0??01 dB m-1) in excess of losses from spherical spreading. 5.Synthesis and applications. Our method for estimating animal population density from acoustic signals fills a gap in the census methods available for visually cryptic but vocal taxa, including many species of bird and cetacean. The necessary equipment is simple and readily available; as few as two microphones may provide adequate estimates, given spatial replication. The method requires that individuals detected at the same place are acoustically distinguishable and all individuals vocalize during the recording interval, or that the per capita rate of vocalization is known. We believe these requirements can be met, with suitable field methods, for a significant
NASA Astrophysics Data System (ADS)
Wang, Yuan
2013-09-01
A grounded electrical source airborne transient electromagnetic (GREATEM) system on an airship enjoys high depth of prospecting and spatial resolution, as well as outstanding detection efficiency and easy flight control. However, the movement and swing of the front-fixed receiving coil can cause severe baseline drift, leading to inferior resistivity image formation. Consequently, the reduction of baseline drift of GREATEM is of vital importance to inversion explanation. To correct the baseline drift, a traditional interpolation method estimates the baseline `envelope' using the linear interpolation between the calculated start and end points of all cycles, and obtains the corrected signal by subtracting the envelope from the original signal. However, the effectiveness and efficiency of the removal is found to be low. Considering the characteristics of the baseline drift in GREATEM data, this study proposes a wavelet-based method based on multi-resolution analysis. The optimal wavelet basis and decomposition levels are determined through the iterative comparison of trial and error. This application uses the sym8 wavelet with 10 decomposition levels, and obtains the approximation at level-10 as the baseline drift, then gets the corrected signal by removing the estimated baseline drift from the original signal. To examine the performance of our proposed method, we establish a dipping sheet model and calculate the theoretical response. Through simulations, we compare the signal-to-noise ratio, signal distortion, and processing speed of the wavelet-based method and those of the interpolation method. Simulation results show that the wavelet-based method outperforms the interpolation method. We also use field data to evaluate the methods, compare the depth section images of apparent resistivity using the original signal, the interpolation-corrected signal and the wavelet-corrected signal, respectively. The results confirm that our proposed wavelet-based method is an
A wavelet based investigation of long memory in stock returns
NASA Astrophysics Data System (ADS)
Tan, Pei P.; Galagedera, Don U. A.; Maharaj, Elizabeth A.
2012-04-01
Using a wavelet-based maximum likelihood fractional integration estimator, we test long memory (return predictability) in the returns at the market, industry and firm level. In an analysis of emerging market daily returns over the full sample period, we find that long-memory is not present and in approximately twenty percent of 175 stocks there is evidence of long memory. The absence of long memory in the market returns may be a consequence of contemporaneous aggregation of stock returns. However, when the analysis is carried out with rolling windows evidence of long memory is observed in certain time frames. These results are largely consistent with that of detrended fluctuation analysis. A test of firm-level information in explaining stock return predictability using a logistic regression model reveal that returns of large firms are more likely to possess long memory feature than in the returns of small firms. There is no evidence to suggest that turnover, earnings per share, book-to-market ratio, systematic risk and abnormal return with respect to the market model is associated with return predictability. However, degree of long-range dependence appears to be associated positively with earnings per share, systematic risk and abnormal return and negatively with book-to-market ratio.
Gearbox diagnostics using wavelet-based windowing technique
NASA Astrophysics Data System (ADS)
Omar, F. K.; Gaouda, A. M.
2009-08-01
In extracting gear box acoustic signals embedded in excessive noise, the need for an online and automated tool becomes a crucial necessity. One of the recent approaches that have gained some acceptance within the research arena is the Wavelet multi-resolution analysis (WMRA). However selecting an accurate mother wavelet, defining dynamic threshold values and identifying the resolution levels to be considered in gearboxes fault detection and diagnosis are still challenging tasks. This paper proposes a novel wavelet-based technique for detecting, locating and estimating the severity of defects in gear tooth fracture. The proposed technique enhances the WMRA by decomposing the noisy data into different resolution levels while data sliding it into Kaiser's window. Only the maximum expansion coefficients at each resolution level are used in de-noising, detecting and measuring the severity of the defects. A small set of coefficients is used in the monitoring process without assigning threshold values or performing signal reconstruction. The proposed monitoring technique has been applied to a laboratory data corrupted with high noise level.
Wavelet-based compression of pathological images for telemedicine applications
NASA Astrophysics Data System (ADS)
Chen, Chang W.; Jiang, Jianfei; Zheng, Zhiyong; Wu, Xue G.; Yu, Lun
2000-05-01
In this paper, we present the performance evaluation of wavelet-based coding techniques as applied to the compression of pathological images for application in an Internet-based telemedicine system. We first study how well suited the wavelet-based coding is as it applies to the compression of pathological images, since these images often contain fine textures that are often critical to the diagnosis of potential diseases. We compare the wavelet-based compression with the DCT-based JPEG compression in the DICOM standard for medical imaging applications. Both objective and subjective measures have been studied in the evaluation of compression performance. These studies are performed in close collaboration with expert pathologists who have conducted the evaluation of the compressed pathological images and communication engineers and information scientists who designed the proposed telemedicine system. These performance evaluations have shown that the wavelet-based coding is suitable for the compression of various pathological images and can be integrated well with the Internet-based telemedicine systems. A prototype of the proposed telemedicine system has been developed in which the wavelet-based coding is adopted for the compression to achieve bandwidth efficient transmission and therefore speed up the communications between the remote terminal and the central server of the telemedicine system.
Regularized Multitask Learning for Multidimensional Log-Density Gradient Estimation.
Yamane, Ikko; Sasaki, Hiroaki; Sugiyama, Masashi
2016-07-01
Log-density gradient estimation is a fundamental statistical problem and possesses various practical applications such as clustering and measuring nongaussianity. A naive two-step approach of first estimating the density and then taking its log gradient is unreliable because an accurate density estimate does not necessarily lead to an accurate log-density gradient estimate. To cope with this problem, a method to directly estimate the log-density gradient without density estimation has been explored and demonstrated to work much better than the two-step method. The objective of this letter is to improve the performance of this direct method in multidimensional cases. Our idea is to regard the problem of log-density gradient estimation in each dimension as a task and apply regularized multitask learning to the direct log-density gradient estimator. We experimentally demonstrate the usefulness of the proposed multitask method in log-density gradient estimation and mode-seeking clustering.
Density Estimations in Laboratory Debris Flow Experiments
NASA Astrophysics Data System (ADS)
Queiroz de Oliveira, Gustavo; Kulisch, Helmut; Malcherek, Andreas; Fischer, Jan-Thomas; Pudasaini, Shiva P.
2016-04-01
Bulk density and its variation is an important physical quantity to estimate the solid-liquid fractions in two-phase debris flows. Here we present mass and flow depth measurements for experiments performed in a large-scale laboratory set up. Once the mixture is released and it moves down the inclined channel, measurements allow us to determine the bulk density evolution throughout the debris flow. Flow depths are determined by ultrasonic pulse reflection, and the mass is measured with a total normal force sensor. The data were obtained at 50 Hz. The initial two phase material was composed of 350 kg debris with water content of 40%. A very fine pebble with mean particle diameter of 3 mm, particle density of 2760 kg/m³ and bulk density of 1400 kg/m³ in dry condition was chosen as the solid material. Measurements reveal that the debris bulk density remains high from the head to the middle of the debris body whereas it drops substantially at the tail. This indicates lower water content at the tail, compared to the head and the middle portion of the debris body. This means that the solid and fluid fractions are varying strongly in a non-linear manner along the flow path, and from the head to the tail of the debris mass. Importantly, this spatial-temporal density variation plays a crucial role in determining the impact forces associated with the dynamics of the flow. Our setup allows for investigating different two phase material compositions, including large fluid fractions, with high resolutions. The considered experimental set up may enable us to transfer the observed phenomena to natural large-scale events. Furthermore, the measurement data allows evaluating results of numerical two-phase mass flow simulations. These experiments are parts of the project avaflow.org that intends to develop a GIS-based open source computational tool to describe wide spectrum of rapid geophysical mass flows, including avalanches and real two-phase debris flows down complex natural
Kernel density estimation using graphical processing unit
NASA Astrophysics Data System (ADS)
Sunarko, Su'ud, Zaki
2015-09-01
Kernel density estimation for particles distributed over a 2-dimensional space is calculated using a single graphical processing unit (GTX 660Ti GPU) and CUDA-C language. Parallel calculations are done for particles having bivariate normal distribution and by assigning calculations for equally-spaced node points to each scalar processor in the GPU. The number of particles, blocks and threads are varied to identify favorable configuration. Comparisons are obtained by performing the same calculation using 1, 2 and 4 processors on a 3.0 GHz CPU using MPICH 2.0 routines. Speedups attained with the GPU are in the range of 88 to 349 times compared the multiprocessor CPU. Blocks of 128 threads are found to be the optimum configuration for this case.
Wavelet-based detection of clods on a soil surface
NASA Astrophysics Data System (ADS)
Vannier, E.; Ciarletti, V.; Darboux, F.
2009-11-01
One of the aims of the tillage operation is to produce a specific range of clod sizes, suitable for plant emergence. Due to its cloddy structure, a tilled soil surface has its own roughness, which is connected also with soil water content and erosion phenomena. The comprehension and modeling of surface runoff and erosion require that the micro-topography of the soil surface is well estimated. Therefore, the present paper focuses on the soil surface analysis and characterization. An original method consisting in detecting the individual clods or large aggregates on a 3D digital elevation model (DEM) of the soil surface is introduced. A multiresolution decomposition of the surface is performed by wavelet transform. Then a supervised local maxima extraction is performed on the different sub surfaces and a last process makes the validation of the extractions and the merging of the different scales. The method of detection was evaluated with the help of a soil scientist on a controlled surface made in the laboratory as well as on real seedbed and ploughed surfaces, made by tillage operations in an agricultural field. The identifications of the clods are in good agreement, with an overall sensitivity of 84% and a specificity of 94%. The false positive or false negative detections may have several causes. Some very nearby clods may have been smoothed together in the approximation process. Other clods may be embedded into another peace of the surface relief such as another bigger clod or a part of the furrow. At last, the low levels of decomposition are dependent on the resolution and the measurement noise of the DEM. Therefore, some borders of clods may be difficult to determine. The wavelet-based detection method seems to be suitable for soil surfaces described by 2 or 3 levels of approximation such as seedbeds.
Wavelet-based analysis of blood pressure dynamics in rats
NASA Astrophysics Data System (ADS)
Pavlov, A. N.; Anisimov, A. A.; Semyachkina-Glushkovskaya, O. V.; Berdnikova, V. A.; Kuznecova, A. S.; Matasova, E. G.
2009-02-01
Using a wavelet-based approach, we study stress-induced reactions in the blood pressure dynamics in rats. Further, we consider how the level of the nitric oxide (NO) influences the heart rate variability. Clear distinctions for male and female rats are reported.
3D Wavelet-Based Filter and Method
Moss, William C.; Haase, Sebastian; Sedat, John W.
2008-08-12
A 3D wavelet-based filter for visualizing and locating structural features of a user-specified linear size in 2D or 3D image data. The only input parameter is a characteristic linear size of the feature of interest, and the filter output contains only those regions that are correlated with the characteristic size, thus denoising the image.
Enhancing Hyperspectral Data Throughput Utilizing Wavelet-Based Fingerprints
I. W. Ginsberg
1999-09-01
Multiresolutional decompositions known as spectral fingerprints are often used to extract spectral features from multispectral/hyperspectral data. In this study, the authors investigate the use of wavelet-based algorithms for generating spectral fingerprints. The wavelet-based algorithms are compared to the currently used method, traditional convolution with first-derivative Gaussian filters. The comparison analyses consists of two parts: (a) the computational expense of the new method is compared with the computational costs of the current method and (b) the outputs of the wavelet-based methods are compared with those of the current method to determine any practical differences in the resulting spectral fingerprints. The results show that the wavelet-based algorithms can greatly reduce the computational expense of generating spectral fingerprints, while practically no differences exist in the resulting fingerprints. The analysis is conducted on a database of hyperspectral signatures, namely, Hyperspectral Digital Image Collection Experiment (HYDICE) signatures. The reduction in computational expense is by a factor of about 30, and the average Euclidean distance between resulting fingerprints is on the order of 0.02.
Biorthogonal wavelet-based method of moments for electromagnetic scattering
NASA Astrophysics Data System (ADS)
Zhang, Qinke
Wavelet analysis is a technique developed in recent years in mathematics and has found usefulness in signal processing and many other engineering areas. The practical use of wavelets for the solution of partial differential and integral equations in computational electromagnetics has been investigated in this dissertation, with the emphasis on development of biorthogonal wavelet based method of moments for the solution of electric and magnetic field integral equations. The fundamentals and numerical analysis aspects of wavelet theory have been studied. In particular, a family of compactly supported biorthogonal spline wavelet bases on the n-cube (0,1) n has been studied in detail. The wavelet bases were used in this work as a building block to construct biorthogonal wavelet bases on general domain geometry. A specific and practical way of adapting the wavelet bases to certain n- dimensional blocks or elements is proposed based on the domain decomposition and local transformation techniques used in traditional finite element methods and computer aided graphics. The element, with the biorthogonal wavelet base embedded in it, is called a wavelet element in this work. The physical domains which can be treated with this method include general curves, surfaces in 2D and 3D, and 3D volume domains. A two-step mapping is proposed for the purpose of taking full advantage of the zero-moments of wavelets. The wavelet element approach appears to offer several important advantages. It avoids the need of generating very complicated meshes required in traditional finite element based methods, and makes the adaptive analysis easy to implement. A specific implementation procedure for performing adaptive analysis is proposed. The proposed biorthogonal wavelet based method of moments (BWMoM) has been implemented by using object-oriented programming techniques. The main computational issues have been detailed, discussed, and implemented in the whole package. Numerical examples show
Wavelet-based regularity analysis reveals Recurrent Spatiotemporal Behavior in Resting-state fMRI
Smith, Robert X.; Jann, Kay; Ances, Beau; Wang, Danny J.J.
2015-01-01
One of the major findings from multi-modal neuroimaging studies in the past decade is that the human brain is anatomically and functionally organized into large-scale networks. In resting state fMRI (rs-fMRI), spatial patterns emerge when temporal correlations between various brain regions are tallied, evidencing networks of ongoing intercortical cooperation. However, the dynamic structure governing the brain’s spontaneous activity is far less understood due to the short and noisy nature of the rs-fMRI signal. Here we develop a wavelet-based regularity analysis based on noise estimation capabilities of the wavelet transform to measure recurrent temporal pattern stability within the rs-fMRI signal across multiple temporal scales. The method consists of performing a stationary wavelet transform (SWT) to preserve signal structure, followed by construction of “lagged” subsequences to adjust for correlated features, and finally the calculation of sample entropy across wavelet scales based on an “objective” estimate of noise level at each scale. We found that the brain’s default mode network (DMN) areas manifest a higher level of irregularity in rs-fMRI time series than rest of the brain. In 25 aged subjects with mild cognitive impairment and 25 matched healthy controls, wavelet based regularity analysis showed improved sensitivity in detecting changes in the regularity of rs-fMRI signals between the two groups within the DMN and executive control networks, compared to standard multiscale entropy analysis. Wavelet based regularity analysis based on noise estimation capabilities of the wavelet transform is a promising technique to characterize the dynamic structure of rs-fMRI as well as other biological signals. PMID:26096080
A new parametric method of estimating the joint probability density
NASA Astrophysics Data System (ADS)
Alghalith, Moawia
2017-04-01
We present simple parametric methods that overcome major limitations of the literature on joint/marginal density estimation. In doing so, we do not assume any form of marginal or joint distribution. Furthermore, using our method, a multivariate density can be easily estimated if we know only one of the marginal densities. We apply our methods to financial data.
Concrete density estimation by rebound hammer method
Ismail, Mohamad Pauzi bin Masenwat, Noor Azreen bin; Sani, Suhairy bin; Mohd, Shukri; Jefri, Muhamad Hafizie Bin; Abdullah, Mahadzir Bin; Isa, Nasharuddin bin; Mahmud, Mohamad Haniza bin
2016-01-22
Concrete is the most common and cheap material for radiation shielding. Compressive strength is the main parameter checked for determining concrete quality. However, for shielding purposes density is the parameter that needs to be considered. X- and -gamma radiations are effectively absorbed by a material with high atomic number and high density such as concrete. The high strength normally implies to higher density in concrete but this is not always true. This paper explains and discusses the correlation between rebound hammer testing and density for concrete containing hematite aggregates. A comparison is also made with normal concrete i.e. concrete containing crushed granite.
Concrete density estimation by rebound hammer method
NASA Astrophysics Data System (ADS)
Ismail, Mohamad Pauzi bin; Jefri, Muhamad Hafizie Bin; Abdullah, Mahadzir Bin; Masenwat, Noor Azreen bin; Sani, Suhairy bin; Mohd, Shukri; Isa, Nasharuddin bin; Mahmud, Mohamad Haniza bin
2016-01-01
Concrete is the most common and cheap material for radiation shielding. Compressive strength is the main parameter checked for determining concrete quality. However, for shielding purposes density is the parameter that needs to be considered. X- and -gamma radiations are effectively absorbed by a material with high atomic number and high density such as concrete. The high strength normally implies to higher density in concrete but this is not always true. This paper explains and discusses the correlation between rebound hammer testing and density for concrete containing hematite aggregates. A comparison is also made with normal concrete i.e. concrete containing crushed granite.
Nonparametric Estimation of Distribution and Density Functions with Applications.
1982-05-01
have been used: kurtosis, Hogg’s Q statistic, and percentile ratios. Applications of the discriminants in parametric estimation problem can be found...particularly in the sense of parametric estimation (Ref 108). Reiss proposes minimum distance estimators of unimodal densities. He proves consistency and...in distribution and density estimation, and goodness of fit testing. 129 The next chapter will venture into the realm of parametric estimation using
Fingerprint spoof detection using wavelet based local binary pattern
NASA Astrophysics Data System (ADS)
Kumpituck, Supawan; Li, Dongju; Kunieda, Hiroaki; Isshiki, Tsuyoshi
2017-02-01
In this work, a fingerprint spoof detection method using an extended feature, namely Wavelet-based Local Binary Pattern (Wavelet-LBP) is introduced. Conventional wavelet-based methods calculate wavelet energy of sub-band images as the feature for discrimination while we propose to use Local Binary Pattern (LBP) operation to capture the local appearance of the sub-band images instead. The fingerprint image is firstly decomposed by two-dimensional discrete wavelet transform (2D-DWT), and then LBP is applied on the derived wavelet sub-band images. Furthermore, the extracted features are used to train Support Vector Machine (SVM) classifier to create the model for classifying the fingerprint images into genuine and spoof. Experiments that has been done on Fingerprint Liveness Detection Competition (LivDet) datasets show the improvement of the fingerprint spoof detection by using the proposed feature.
Classification of Underwater Signals Using Wavelet-Based Decompositions
1998-06-01
proposed by Learned and Willsky [21], uses the SVD information obtained from the power mapping, the second one selects the most within-a-class...34 SPIE, Vol. 2242, pp. 792-802, Wavelet Applications, 1994 [14] R. Coifman and D. Donoho, "Translation-Invariant Denoising ," Internal Report...J. Barsanti, Jr., Denoising of Ocean Acoustic Signals Using Wavelet-Based Techniques, MSEE Thesis, Naval Postgraduate School, Monterey, California
Fast wavelet based algorithms for linear evolution equations
NASA Technical Reports Server (NTRS)
Engquist, Bjorn; Osher, Stanley; Zhong, Sifen
1992-01-01
A class was devised of fast wavelet based algorithms for linear evolution equations whose coefficients are time independent. The method draws on the work of Beylkin, Coifman, and Rokhlin which they applied to general Calderon-Zygmund type integral operators. A modification of their idea is applied to linear hyperbolic and parabolic equations, with spatially varying coefficients. A significant speedup over standard methods is obtained when applied to hyperbolic equations in one space dimension and parabolic equations in multidimensions.
Wavelet-based verification of the quantitative precipitation forecast
NASA Astrophysics Data System (ADS)
Yano, Jun-Ichi; Jakubiak, Bogumil
2016-06-01
This paper explores the use of wavelets for spatial verification of quantitative precipitation forecasts (QPF), and especially the capacity of wavelets to provide both localization and scale information. Two 24-h forecast experiments using the two versions of the Coupled Ocean/Atmosphere Mesoscale Prediction System (COAMPS) on 22 August 2010 over Poland are used to illustrate the method. Strong spatial localizations and associated intermittency of the precipitation field make verification of QPF difficult using standard statistical methods. The wavelet becomes an attractive alternative, because it is specifically designed to extract spatially localized features. The wavelet modes are characterized by the two indices for the scale and the localization. Thus, these indices can simply be employed for characterizing the performance of QPF in scale and localization without any further elaboration or tunable parameters. Furthermore, spatially-localized features can be extracted in wavelet space in a relatively straightforward manner with only a weak dependence on a threshold. Such a feature may be considered an advantage of the wavelet-based method over more conventional "object" oriented verification methods, as the latter tend to represent strong threshold sensitivities. The present paper also points out limits of the so-called "scale separation" methods based on wavelets. Our study demonstrates how these wavelet-based QPF verifications can be performed straightforwardly. Possibilities for further developments of the wavelet-based methods, especially towards a goal of identifying a weak physical process contributing to forecast error, are also pointed out.
Wavelet-based coding of ultraspectral sounder data
NASA Astrophysics Data System (ADS)
Garcia-Vilchez, Fernando; Serra-Sagrista, Joan; Auli-Llinas, Francesc
2005-08-01
In this paper we provide a study concerning the suitability of well-known image coding techniques originally devised for lossy compression of still natural images when applied to lossless compression of ultraspectral sounder data. We present here the experimental results of six wavelet-based widespread coding techniques, namely EZW, IC, SPIHT, JPEG2000, SPECK and CCSDS-IDC. Since the considered techniques are 2-dimensional (2D) in nature but the ultraspectral data are 3D, a pre-processing stage is applied to convert the two spatial dimensions into a single spatial dimension. All the wavelet-based techniques are competitive when compared either to the benchmark prediction-based methods for lossless compression, CALIC and JPEG-LS, or to two common compression utilities, GZIP and BZIP2. EZW, SPIHT, SPECK and CCSDS-IDC provide a very similar performance, while IC and JPEG2000 improve the compression factor when compared to the other wavelet-based methods. Nevertheless, they are not competitive when compared to a fast precomputed vector quantizer. The benefits of applying a pre-processing stage, the Bias Adjusted Reordering, prior to the coding process in order to further exploit the spectral and/or spatial correlation when 2D techniques are employed, are also presented.
Density estimation using the trapping web design: A geometric analysis
Link, W.A.; Barker, R.J.
1994-01-01
Population densities for small mammal and arthropod populations can be estimated using capture frequencies for a web of traps. A conceptually simple geometric analysis that avoid the need to estimate a point on a density function is proposed. This analysis incorporates data from the outermost rings of traps, explaining large capture frequencies in these rings rather than truncating them from the analysis.
Traffic characterization and modeling of wavelet-based VBR encoded video
Yu Kuo; Jabbari, B.; Zafar, S.
1997-07-01
Wavelet-based video codecs provide a hierarchical structure for the encoded data, which can cater to a wide variety of applications such as multimedia systems. The characteristics of such an encoder and its output, however, have not been well examined. In this paper, the authors investigate the output characteristics of a wavelet-based video codec and develop a composite model to capture the traffic behavior of its output video data. Wavelet decomposition transforms the input video in a hierarchical structure with a number of subimages at different resolutions and scales. the top-level wavelet in this structure contains most of the signal energy. They first describe the characteristics of traffic generated by each subimage and the effect of dropping various subimages at the encoder on the signal-to-noise ratio at the receiver. They then develop an N-state Markov model to describe the traffic behavior of the top wavelet. The behavior of the remaining wavelets are then obtained through estimation, based on the correlations between these subimages at the same level of resolution and those wavelets located at an immediate higher level. In this paper, a three-state Markov model is developed. The resulting traffic behavior described by various statistical properties, such as moments and correlations, etc., is then utilized to validate their model.
Breast density estimation from high spectral and spatial resolution MRI.
Li, Hui; Weiss, William A; Medved, Milica; Abe, Hiroyuki; Newstead, Gillian M; Karczmar, Gregory S; Giger, Maryellen L
2016-10-01
A three-dimensional breast density estimation method is presented for high spectral and spatial resolution (HiSS) MR imaging. Twenty-two patients were recruited (under an Institutional Review Board--approved Health Insurance Portability and Accountability Act-compliant protocol) for high-risk breast cancer screening. Each patient received standard-of-care clinical digital x-ray mammograms and MR scans, as well as HiSS scans. The algorithm for breast density estimation includes breast mask generating, breast skin removal, and breast percentage density calculation. The inter- and intra-user variabilities of the HiSS-based density estimation were determined using correlation analysis and limits of agreement. Correlation analysis was also performed between the HiSS-based density estimation and radiologists' breast imaging-reporting and data system (BI-RADS) density ratings. A correlation coefficient of 0.91 ([Formula: see text]) was obtained between left and right breast density estimations. An interclass correlation coefficient of 0.99 ([Formula: see text]) indicated high reliability for the inter-user variability of the HiSS-based breast density estimations. A moderate correlation coefficient of 0.55 ([Formula: see text]) was observed between HiSS-based breast density estimations and radiologists' BI-RADS. In summary, an objective density estimation method using HiSS spectral data from breast MRI was developed. The high reproducibility with low inter- and low intra-user variabilities shown in this preliminary study suggest that such a HiSS-based density metric may be potentially beneficial in programs requiring breast density such as in breast cancer risk assessment and monitoring effects of therapy.
DECAF - Density Estimation for Cetaceans from Passive Acoustic Fixed Sensors
2008-01-01
whale density at AUTEC using single hydrophone data; • if time allows, estimation of humpback whale density at PMRF. Project investigators and...classifier for minke and humpback whales; he is also taking the lead on developing methods for estimating density from single fixed sensors, together...this was presented as a poster paper (Marques and Thomas 2008) at the International Statistical Ecology Conference in July 2008. The humpback whale
DECAF - Density Estimation for Cetaceans from Passive Acoustic Fixed Sensors
2010-01-01
DECAF – Density Estimation for Cetaceans from passive Acoustic Fixed sensors Len Thomas CREEM, University of St Andrews, St Andrews, Fife, Scotland...REPORT DATE 2010 2. REPORT TYPE 3. DATES COVERED 00-00-2010 to 00-00-2010 4. TITLE AND SUBTITLE DECAF - Density Estimation for Cetaceans from...Prescribed by ANSI Std Z39-18 LONG-TERM GOALS Determining the spatial density and distribution of cetacean (whale and dolphin) species is fundamental to
Nonparametric estimation of plant density by the distance method
Patil, S.A.; Burnham, K.P.; Kovner, J.L.
1979-01-01
A relation between the plant density and the probability density function of the nearest neighbor distance (squared) from a random point is established under fairly broad conditions. Based upon this relationship, a nonparametric estimator for the plant density is developed and presented in terms of order statistics. Consistency and asymptotic normality of the estimator are discussed. An interval estimator for the density is obtained. The modifications of this estimator and its variance are given when the distribution is truncated. Simulation results are presented for regular, random and aggregated populations to illustrate the nonparametric estimator and its variance. A numerical example from field data is given. Merits and deficiencies of the estimator are discussed with regard to its robustness and variance.
Krug, R; Carballido-Gamio, J; Burghardt, A; Haase, S; Sedat, J W; Moss, W C; Majumdar, S
2005-04-11
Trabecular bone structure and bone density contribute to the strength of bone and are important in the study of osteoporosis. Wavelets are a powerful tool to characterize and quantify texture in an image. In this study the thickness of trabecular bone was analyzed in 8 cylindrical cores of the vertebral spine. Images were obtained from 3 Tesla (T) magnetic resonance imaging (MRI) and micro-computed tomography ({micro}CT). Results from the wavelet based analysis of trabecular bone were compared with standard two-dimensional structural parameters (analogous to bone histomorphometry) obtained using mean intercept length (MR images) and direct 3D distance transformation methods ({micro}CT images). Additionally, the bone volume fraction was determined from MR images. We conclude that the wavelet based analyses delivers comparable results to the established MR histomorphometric measurements. The average deviation in trabecular thickness was less than one pixel size between the wavelet and the standard approach for both MR and {micro}CT analysis. Since the wavelet based method is less sensitive to image noise, we see an advantage of wavelet analysis of trabecular bone for MR imaging when going to higher resolution.
Adaptive wavelet-based recognition of oscillatory patterns on electroencephalograms
NASA Astrophysics Data System (ADS)
Nazimov, Alexey I.; Pavlov, Alexey N.; Hramov, Alexander E.; Grubov, Vadim V.; Koronovskii, Alexey A.; Sitnikova, Evgenija Y.
2013-02-01
The problem of automatic recognition of specific oscillatory patterns on electroencephalograms (EEG) is addressed using the continuous wavelet-transform (CWT). A possibility of improving the quality of recognition by optimizing the choice of CWT parameters is discussed. An adaptive approach is proposed to identify sleep spindles (SS) and spike wave discharges (SWD) that assumes automatic selection of CWT-parameters reflecting the most informative features of the analyzed time-frequency structures. Advantages of the proposed technique over the standard wavelet-based approaches are considered.
Wavelet-based image compression using fixed residual value
NASA Astrophysics Data System (ADS)
Muzaffar, Tanzeem; Choi, Tae-Sun
2000-12-01
Wavelet based compression is getting popular due to its promising compaction properties at low bitrate. Zerotree wavelet image coding scheme efficiently exploits multi-level redundancy present in transformed data to minimize coding bits. In this paper, a new technique is proposed to achieve high compression by adding new zerotree and significant symbols to original EZW coder. Contrary to four symbols present in basic EZW scheme, modified algorithm uses eight symbols to generate fewer bits for a given data. Subordinate pass of EZW is eliminated and replaced with fixed residual value transmission for easy implementation. This modification simplifies the coding technique as well and speeds up the process, retaining the property of embeddedness.
A Wavelet-Based Approach to Fall Detection
Palmerini, Luca; Bagalà, Fabio; Zanetti, Andrea; Klenk, Jochen; Becker, Clemens; Cappello, Angelo
2015-01-01
Falls among older people are a widely documented public health problem. Automatic fall detection has recently gained huge importance because it could allow for the immediate communication of falls to medical assistance. The aim of this work is to present a novel wavelet-based approach to fall detection, focusing on the impact phase and using a dataset of real-world falls. Since recorded falls result in a non-stationary signal, a wavelet transform was chosen to examine fall patterns. The idea is to consider the average fall pattern as the “prototype fall”.In order to detect falls, every acceleration signal can be compared to this prototype through wavelet analysis. The similarity of the recorded signal with the prototype fall is a feature that can be used in order to determine the difference between falls and daily activities. The discriminative ability of this feature is evaluated on real-world data. It outperforms other features that are commonly used in fall detection studies, with an Area Under the Curve of 0.918. This result suggests that the proposed wavelet-based feature is promising and future studies could use this feature (in combination with others considering different fall phases) in order to improve the performance of fall detection algorithms. PMID:26007719
Optimum nonparametric estimation of population density based on ordered distances
Patil, S.A.; Kovner, J.L.; Burnham, Kenneth P.
1982-01-01
The asymptotic mean and error mean square are determined for the nonparametric estimator of plant density by distance sampling proposed by Patil, Burnham and Kovner (1979, Biometrics 35, 597-604. On the basis of these formulae, a bias-reduced version of this estimator is given, and its specific form is determined which gives minimum mean square error under varying assumptions about the true probability density function of the sampled data. Extension is given to line-transect sampling.
Martinez-Torres, C.; Streppa, L.; Arneodo, A.; Argoul, F.; Argoul, P.
2016-01-18
Compared to active microrheology where a known force or modulation is periodically imposed to a soft material, passive microrheology relies on the spectral analysis of the spontaneous motion of tracers inherent or external to the material. Passive microrheology studies of soft or living materials with atomic force microscopy (AFM) cantilever tips are rather rare because, in the spectral densities, the rheological response of the materials is hardly distinguishable from other sources of random or periodic perturbations. To circumvent this difficulty, we propose here a wavelet-based decomposition of AFM cantilever tip fluctuations and we show that when applying this multi-scale method to soft polymer layers and to living myoblasts, the structural damping exponents of these soft materials can be retrieved.
Evaluating parasite densities and estimation of parameters in transmission systems.
Heinzmann, D; Torgerson, P R
2008-09-01
Mathematical modelling of parasite transmission systems can provide useful information about host parasite interactions and biology and parasite population dynamics. In addition good predictive models may assist in designing control programmes to reduce the burden of human and animal disease. Model building is only the first part of the process. These models then need to be confronted with data to obtain parameter estimates and the accuracy of these estimates has to be evaluated. Estimation of parasite densities is central to this. Parasite density estimates can include the proportion of hosts infected with parasites (prevalence) or estimates of the parasite biomass within the host population (abundance or intensity estimates). Parasite density estimation is often complicated by highly aggregated distributions of parasites within the hosts. This causes additional challenges when calculating transmission parameters. Using Echinococcus spp. as a model organism, this manuscript gives a brief overview of the types of descriptors of parasite densities, how to estimate them and on the use of these estimates in a transmission model.
Towards accurate and precise estimates of lion density.
Elliot, Nicholas B; Gopalaswamy, Arjun M
2016-12-13
Reliable estimates of animal density are fundamental to our understanding of ecological processes and population dynamics. Furthermore, their accuracy is vital to conservation biology since wildlife authorities rely on these figures to make decisions. However, it is notoriously difficult to accurately estimate density for wide-ranging species such as carnivores that occur at low densities. In recent years, significant progress has been made in density estimation of Asian carnivores, but the methods have not been widely adapted to African carnivores. African lions (Panthera leo) provide an excellent example as although abundance indices have been shown to produce poor inferences, they continue to be used to estimate lion density and inform management and policy. In this study we adapt a Bayesian spatially explicit capture-recapture model to estimate lion density in the Maasai Mara National Reserve (MMNR) and surrounding conservancies in Kenya. We utilize sightings data from a three-month survey period to produce statistically rigorous spatial density estimates. Overall posterior mean lion density was estimated to be 16.85 (posterior standard deviation = 1.30) lions over one year of age per 100km(2) with a sex ratio of 2.2♀:1♂. We argue that such methods should be developed, improved and favored over less reliable methods such as track and call-up surveys. We caution against trend analyses based on surveys of differing reliability and call for a unified framework to assess lion numbers across their range in order for better informed management and policy decisions to be made. This article is protected by copyright. All rights reserved.
An Extreme Learning Machine Approach to Density Estimation Problems.
Cervellera, Cristiano; Maccio, Danilo
2017-01-17
In this paper, we discuss how the extreme learning machine (ELM) framework can be effectively employed in the unsupervised context of multivariate density estimation. In particular, two algorithms are introduced, one for the estimation of the cumulative distribution function underlying the observed data, and one for the estimation of the probability density function. The algorithms rely on the concept of $F$-discrepancy, which is closely related to the Kolmogorov-Smirnov criterion for goodness of fit. Both methods retain the key feature of the ELM of providing the solution through random assignment of the hidden feature map and a very light computational burden. A theoretical analysis is provided, discussing convergence under proper hypotheses on the chosen activation functions. Simulation tests show how ELMs can be successfully employed in the density estimation framework, as a possible alternative to other standard methods.
Small-mammal density estimation: A field comparison of grid-based vs. web-based density estimators
Parmenter, R.R.; Yates, Terry L.; Anderson, D.R.; Burnham, K.P.; Dunnum, J.L.; Franklin, A.B.; Friggens, M.T.; Lubow, B.C.; Miller, M.; Olson, G.S.; Parmenter, Cheryl A.; Pollard, J.; Rexstad, E.; Shenk, T.M.; Stanley, T.R.; White, Gary C.
2003-01-01
Statistical models for estimating absolute densities of field populations of animals have been widely used over the last century in both scientific studies and wildlife management programs. To date, two general classes of density estimation models have been developed: models that use data sets from capture–recapture or removal sampling techniques (often derived from trapping grids) from which separate estimates of population size (NÌ‚) and effective sampling area (AÌ‚) are used to calculate density (DÌ‚ = NÌ‚/AÌ‚); and models applicable to sampling regimes using distance-sampling theory (typically transect lines or trapping webs) to estimate detection functions and densities directly from the distance data. However, few studies have evaluated these respective models for accuracy, precision, and bias on known field populations, and no studies have been conducted that compare the two approaches under controlled field conditions. In this study, we evaluated both classes of density estimators on known densities of enclosed rodent populations. Test data sets (n = 11) were developed using nine rodent species from capture–recapture live-trapping on both trapping grids and trapping webs in four replicate 4.2-ha enclosures on the Sevilleta National Wildlife Refuge in central New Mexico, USA. Additional “saturation” trapping efforts resulted in an enumeration of the rodent populations in each enclosure, allowing the computation of true densities. Density estimates (DÌ‚) were calculated using program CAPTURE for the grid data sets and program DISTANCE for the web data sets, and these results were compared to the known true densities (D) to evaluate each model's relative mean square error, accuracy, precision, and bias. In addition, we evaluated a variety of approaches to each data set's analysis by having a group of independent expert analysts calculate their best density estimates without a priori knowledge of the true densities; this
Wavelet-based target detection using multiscale directional analysis
NASA Astrophysics Data System (ADS)
Chambers, Bradley J.; Reynolds, William D., Jr.; Campbell, Derrick S.; Fennell, Darius K.; Ansari, Rashid
2007-04-01
Efficient processing of imagery derived from remote sensing systems has become ever more important due to increasing data sizes, rates, and bit depths. This paper proposes a target detection method that uses a special class of wavelets based on highly frequency-selective directional filter banks. The approach helps isolate object features in different directional filter output components. These components lend themselves well to the application of powerful denoising and edge detection procedures in the wavelet domain. Edge information is derived from directional wavelet decompositions to detect targets of known dimension in electro optical imagery. Results of successful detection of objects using the proposed method are presented in the paper. The approach highlights many of the benefits of working with directional wavelet analysis for image denoising and detection.
A Wavelet-Based Methodology for Grinding Wheel Condition Monitoring
Liao, T. W.; Ting, C.F.; Qu, Jun; Blau, Peter Julian
2007-01-01
Grinding wheel surface condition changes as more material is removed. This paper presents a wavelet-based methodology for grinding wheel condition monitoring based on acoustic emission (AE) signals. Grinding experiments in creep feed mode were conducted to grind alumina specimens with a resinoid-bonded diamond wheel using two different conditions. During the experiments, AE signals were collected when the wheel was 'sharp' and when the wheel was 'dull'. Discriminant features were then extracted from each raw AE signal segment using the discrete wavelet decomposition procedure. An adaptive genetic clustering algorithm was finally applied to the extracted features in order to distinguish different states of grinding wheel condition. The test results indicate that the proposed methodology can achieve 97% clustering accuracy for the high material removal rate condition, 86.7% for the low material removal rate condition, and 76.7% for the combined grinding conditions if the base wavelet, the decomposition level, and the GA parameters are properly selected.
Wavelet-based image analysis system for soil texture analysis
NASA Astrophysics Data System (ADS)
Sun, Yun; Long, Zhiling; Jang, Ping-Rey; Plodinec, M. John
2003-05-01
Soil texture is defined as the relative proportion of clay, silt and sand found in a given soil sample. It is an important physical property of soil that affects such phenomena as plant growth and agricultural fertility. Traditional methods used to determine soil texture are either time consuming (hydrometer), or subjective and experience-demanding (field tactile evaluation). Considering that textural patterns observed at soil surfaces are uniquely associated with soil textures, we propose an innovative approach to soil texture analysis, in which wavelet frames-based features representing texture contents of soil images are extracted and categorized by applying a maximum likelihood criterion. The soil texture analysis system has been tested successfully with an accuracy of 91% in classifying soil samples into one of three general categories of soil textures. In comparison with the common methods, this wavelet-based image analysis approach is convenient, efficient, fast, and objective.
Wavelet-based Image Compression using Subband Threshold
NASA Astrophysics Data System (ADS)
Muzaffar, Tanzeem; Choi, Tae-Sun
2002-11-01
Wavelet based image compression has been a focus of research in recent days. In this paper, we propose a compression technique based on modification of original EZW coding. In this lossy technique, we try to discard less significant information in the image data in order to achieve further compression with minimal effect on output image quality. The algorithm calculates weight of each subband and finds the subband with minimum weight in every level. This minimum weight subband in each level, that contributes least effect during image reconstruction, undergoes a threshold process to eliminate low-valued data in it. Zerotree coding is done next on the resultant output for compression. Different values of threshold were applied during experiment to see the effect on compression ratio and reconstructed image quality. The proposed method results in further increase in compression ratio with negligible loss in image quality.
Wavelet-based zerotree coding of aerospace images
NASA Astrophysics Data System (ADS)
Franques, Victoria T.; Jain, Vijay K.
1996-06-01
This paper presents a wavelet based image coding method achieving high levels of compression. A multi-resolution subband decomposition system is constructed using Quadrature Mirror Filters. Symmetric extension and windowing of the multi-scaled subbands are incorporated to minimize the boundary effects. Next, the Embedded Zerotree Wavelet coding algorithm is used for data compression method. Elimination of the isolated zero symbol, for certain subbands, leads to an improved EZW algorithm. Further compression is obtained with an adaptive arithmetic coder. We achieve a PSNR of 26.91 dB at a bit rate of 0.018, 35.59 dB at a bit rate of 0.149, and 43.05 dB at 0.892 bits/pixel for the aerospace image, Refuel.
Non-local crime density estimation incorporating housing information
Woodworth, J. T.; Mohler, G. O.; Bertozzi, A. L.; Brantingham, P. J.
2014-01-01
Given a discrete sample of event locations, we wish to produce a probability density that models the relative probability of events occurring in a spatial domain. Standard density estimation techniques do not incorporate priors informed by spatial data. Such methods can result in assigning significant positive probability to locations where events cannot realistically occur. In particular, when modelling residential burglaries, standard density estimation can predict residential burglaries occurring where there are no residences. Incorporating the spatial data can inform the valid region for the density. When modelling very few events, additional priors can help to correctly fill in the gaps. Learning and enforcing correlation between spatial data and event data can yield better estimates from fewer events. We propose a non-local version of maximum penalized likelihood estimation based on the H1 Sobolev seminorm regularizer that computes non-local weights from spatial data to obtain more spatially accurate density estimates. We evaluate this method in application to a residential burglary dataset from San Fernando Valley with the non-local weights informed by housing data or a satellite image. PMID:25288817
Non-local crime density estimation incorporating housing information.
Woodworth, J T; Mohler, G O; Bertozzi, A L; Brantingham, P J
2014-11-13
Given a discrete sample of event locations, we wish to produce a probability density that models the relative probability of events occurring in a spatial domain. Standard density estimation techniques do not incorporate priors informed by spatial data. Such methods can result in assigning significant positive probability to locations where events cannot realistically occur. In particular, when modelling residential burglaries, standard density estimation can predict residential burglaries occurring where there are no residences. Incorporating the spatial data can inform the valid region for the density. When modelling very few events, additional priors can help to correctly fill in the gaps. Learning and enforcing correlation between spatial data and event data can yield better estimates from fewer events. We propose a non-local version of maximum penalized likelihood estimation based on the H(1) Sobolev seminorm regularizer that computes non-local weights from spatial data to obtain more spatially accurate density estimates. We evaluate this method in application to a residential burglary dataset from San Fernando Valley with the non-local weights informed by housing data or a satellite image.
pyGMMis: Mixtures-of-Gaussians density estimation method
NASA Astrophysics Data System (ADS)
Melchior, Peter; Goulding, Andy D.
2016-11-01
pyGMMis is a mixtures-of-Gaussians density estimation method that accounts for arbitrary incompleteness in the process that creates the samples as long as the incompleteness is known over the entire feature space and does not depend on the sample density (missing at random). pyGMMis uses the Expectation-Maximization procedure and generates its best guess of the unobserved samples on the fly. It can also incorporate an uniform "background" distribution as well as independent multivariate normal measurement errors for each of the observed samples, and then recovers an estimate of the error-free distribution from which both observed and unobserved samples are drawn. The code automatically segments the data into localized neighborhoods, and is capable of performing density estimation with millions of samples and thousands of model components on machines with sufficient memory.
Optimization of volumetric breast density estimation in digital mammograms.
Holland, Katharina; Gubern-Merida, Albert; Mann, Ritse; Karssemeijer, Nico
2017-02-23
Fibroglandular tissue volume and percent density can be estimated in unprocessed mammograms using a physics-based method, which relies on an internal reference value representing the projection of fat only. However, pixels representing fat only may not be present in dense breasts, causing an underestimation of density measurements. In this work, we investigate alternative approaches for obtaining a tissue reference value to improve density estimations, particularly in dense breasts. Two of three investigated reference values (F1, F2) are percentiles of the pixel value distribution in the breast interior (the contact area of breast and compression paddle). F1 is determined in a small breast interior, which minimizes the risk that peripheral pixels are included in the measurement at the cost of increasing the chance that no proper reference can be found. F2 is obtained using a larger breast interior. The new approach which is developed for very dense breasts does not require the presence of a fatty tissue region. As reference region we select the densest region in the mammogram and assume that this represents a projection of entirely dense tissue embedded between the subcutaneous fatty tissue layers. By measuring the thickness of the fat layers a reference (F3) can be computed. To obtain accurate breast density estimates irrespective of breast composition we investigated a combination of the results of the three reference values. We collected 202 pairs of MRI's and digital mammograms from 119 women. We compared the percent dense volume estimates based on both modalities and calculated Pearson's correlation coefficients. With the references F1-F3 we found respectively a correlation of R=0.80, R=0.89 and R=0.74. Best results were obtained with the combination of the density estimations (R=0.90). Results show that better volumetric density estimates can be obtained with the hybrid method, in particular for dense breasts, when algorithms are combined to obtain a fatty
Fusion of Hard and Soft Information in Nonparametric Density Estimation
2015-06-10
Fusion of Hard and Soft Information in Nonparametric Density Estimation∗ Johannes O. Royset Roger J-B Wets Department of Operations Research...univariate density estimation in situations when the sample ( hard information) is supplemented by “soft” information about the random phenomenon. These... hard and soft information, and give rates of convergence. Numerical examples illustrate the value of soft information, the ability to generate a
Large Scale Density Estimation of Blue and Fin Whales (LSD)
2014-09-30
interactions with human activity requires knowledge of how many animals are present in an area during a specific time period. Many marine mammal species...assumptions about animal distribution around the sensors, or both. The goal of this research is to develop and implement a new method for...estimating blue and fin whale density that is effective over large spatial scales and is designed to cope with spatial variation in animal density utilizing
Conditional Probability Density Functions Arising in Bearing Estimation
1994-05-01
and a better known performance measure: the Cramer-Rao bound . 14. SUMECT TEm IL5 NUlMN OF PAMES Probability Density Function, bearing angle estimation...results obtained using the calculated density functions and a better known performance measure: the Cramer-Rao bound . The major results obtained are as...48 15. Sampling Inteval , Propagation Delay, and Covariance Singularities ....... 52 viii List of Figures (continued
Statistical properties of parasite density estimators in malaria.
Hammami, Imen; Nuel, Grégory; Garcia, André
2013-01-01
Malaria is a global health problem responsible for nearly one million deaths every year around 85% of which concern children younger than five years old in Sub-Saharan Africa. In addition, around 300 million clinical cases are declared every year. The level of infection, expressed as parasite density, is classically defined as the number of asexual parasites relative to a microliter of blood. Microscopy of Giemsa-stained thick blood films is the gold standard for parasite enumeration. Parasite density estimation methods usually involve threshold values; either the number of white blood cells counted or the number of high power fields read. However, the statistical properties of parasite density estimators generated by these methods have largely been overlooked. Here, we studied the statistical properties (mean error, coefficient of variation, false negative rates) of parasite density estimators of commonly used threshold-based counting techniques depending on variable threshold values. We also assessed the influence of the thresholds on the cost-effectiveness of parasite density estimation methods. In addition, we gave more insights on the behavior of measurement errors according to varying threshold values, and on what should be the optimal threshold values that minimize this variability.
Density Estimation Trees as fast non-parametric modelling tools
NASA Astrophysics Data System (ADS)
Anderlini, Lucio
2016-10-01
A Density Estimation Tree (DET) is a decision trees trained on a multivariate dataset to estimate the underlying probability density function. While not competitive with kernel techniques in terms of accuracy, DETs are incredibly fast, embarrassingly parallel and relatively small when stored to disk. These properties make DETs appealing in the resource- expensive horizon of the LHC data analysis. Possible applications may include selection optimization, fast simulation and fast detector calibration. In this contribution I describe the algorithm and its implementation made available to the HEP community as a RooFit object. A set of applications under discussion within the LHCb Collaboration are also briefly illustrated.
Quantiles, parametric-select density estimation, and bi-information parameter estimators
NASA Technical Reports Server (NTRS)
Parzen, E.
1982-01-01
A quantile-based approach to statistical analysis and probability modeling of data is presented which formulates statistical inference problems as functional inference problems in which the parameters to be estimated are density functions. Density estimators can be non-parametric (computed independently of model identified) or parametric-select (approximated by finite parametric models that can provide standard models whose fit can be tested). Exponential models and autoregressive models are approximating densities which can be justified as maximum entropy for respectively the entropy of a probability density and the entropy of a quantile density. Applications of these ideas are outlined to the problems of modeling: (1) univariate data; (2) bivariate data and tests for independence; and (3) two samples and likelihood ratios. It is proposed that bi-information estimation of a density function can be developed by analogy to the problem of identification of regression models.
Nonparametric probability density estimation by optimization theoretic techniques
NASA Technical Reports Server (NTRS)
Scott, D. W.
1976-01-01
Two nonparametric probability density estimators are considered. The first is the kernel estimator. The problem of choosing the kernel scaling factor based solely on a random sample is addressed. An interactive mode is discussed and an algorithm proposed to choose the scaling factor automatically. The second nonparametric probability estimate uses penalty function techniques with the maximum likelihood criterion. A discrete maximum penalized likelihood estimator is proposed and is shown to be consistent in the mean square error. A numerical implementation technique for the discrete solution is discussed and examples displayed. An extensive simulation study compares the integrated mean square error of the discrete and kernel estimators. The robustness of the discrete estimator is demonstrated graphically.
An Infrastructureless Approach to Estimate Vehicular Density in Urban Environments
Sanguesa, Julio A.; Fogue, Manuel; Garrido, Piedad; Martinez, Francisco J.; Cano, Juan-Carlos; Calafate, Carlos T.; Manzoni, Pietro
2013-01-01
In Vehicular Networks, communication success usually depends on the density of vehicles, since a higher density allows having shorter and more reliable wireless links. Thus, knowing the density of vehicles in a vehicular communications environment is important, as better opportunities for wireless communication can show up. However, vehicle density is highly variable in time and space. This paper deals with the importance of predicting the density of vehicles in vehicular environments to take decisions for enhancing the dissemination of warning messages between vehicles. We propose a novel mechanism to estimate the vehicular density in urban environments. Our mechanism uses as input parameters the number of beacons received per vehicle, and the topological characteristics of the environment where the vehicles are located. Simulation results indicate that, unlike previous proposals solely based on the number of beacons received, our approach is able to accurately estimate the vehicular density, and therefore it could support more efficient dissemination protocols for vehicular environments, as well as improve previously proposed schemes. PMID:23435054
Face Value: Towards Robust Estimates of Snow Leopard Densities.
Alexander, Justine S; Gopalaswamy, Arjun M; Shi, Kun; Riordan, Philip
2015-01-01
When densities of large carnivores fall below certain thresholds, dramatic ecological effects can follow, leading to oversimplified ecosystems. Understanding the population status of such species remains a major challenge as they occur in low densities and their ranges are wide. This paper describes the use of non-invasive data collection techniques combined with recent spatial capture-recapture methods to estimate the density of snow leopards Panthera uncia. It also investigates the influence of environmental and human activity indicators on their spatial distribution. A total of 60 camera traps were systematically set up during a three-month period over a 480 km2 study area in Qilianshan National Nature Reserve, Gansu Province, China. We recorded 76 separate snow leopard captures over 2,906 trap-days, representing an average capture success of 2.62 captures/100 trap-days. We identified a total number of 20 unique individuals from photographs and estimated snow leopard density at 3.31 (SE = 1.01) individuals per 100 km2. Results of our simulation exercise indicate that our estimates from the Spatial Capture Recapture models were not optimal to respect to bias and precision (RMSEs for density parameters less or equal to 0.87). Our results underline the critical challenge in achieving sufficient sample sizes of snow leopard captures and recaptures. Possible performance improvements are discussed, principally by optimising effective camera capture and photographic data quality.
Face Value: Towards Robust Estimates of Snow Leopard Densities
2015-01-01
When densities of large carnivores fall below certain thresholds, dramatic ecological effects can follow, leading to oversimplified ecosystems. Understanding the population status of such species remains a major challenge as they occur in low densities and their ranges are wide. This paper describes the use of non-invasive data collection techniques combined with recent spatial capture-recapture methods to estimate the density of snow leopards Panthera uncia. It also investigates the influence of environmental and human activity indicators on their spatial distribution. A total of 60 camera traps were systematically set up during a three-month period over a 480 km2 study area in Qilianshan National Nature Reserve, Gansu Province, China. We recorded 76 separate snow leopard captures over 2,906 trap-days, representing an average capture success of 2.62 captures/100 trap-days. We identified a total number of 20 unique individuals from photographs and estimated snow leopard density at 3.31 (SE = 1.01) individuals per 100 km2. Results of our simulation exercise indicate that our estimates from the Spatial Capture Recapture models were not optimal to respect to bias and precision (RMSEs for density parameters less or equal to 0.87). Our results underline the critical challenge in achieving sufficient sample sizes of snow leopard captures and recaptures. Possible performance improvements are discussed, principally by optimising effective camera capture and photographic data quality. PMID:26322682
Density estimation in tiger populations: combining information for strong inference.
Gopalaswamy, Arjun M; Royle, J Andrew; Delampady, Mohan; Nichols, James D; Karanth, K Ullas; Macdonald, David W
2012-07-01
A productive way forward in studies of animal populations is to efficiently make use of all the information available, either as raw data or as published sources, on critical parameters of interest. In this study, we demonstrate two approaches to the use of multiple sources of information on a parameter of fundamental interest to ecologists: animal density. The first approach produces estimates simultaneously from two different sources of data. The second approach was developed for situations in which initial data collection and analysis are followed up by subsequent data collection and prior knowledge is updated with new data using a stepwise process. Both approaches are used to estimate density of a rare and elusive predator, the tiger, by combining photographic and fecal DNA spatial capture-recapture data. The model, which combined information, provided the most precise estimate of density (8.5 +/- 1.95 tigers/100 km2 [posterior mean +/- SD]) relative to a model that utilized only one data source (photographic, 12.02 +/- 3.02 tigers/100 km2 and fecal DNA, 6.65 +/- 2.37 tigers/100 km2). Our study demonstrates that, by accounting for multiple sources of available information, estimates of animal density can be significantly improved.
On the Estimation of Shipping Densities from Observed Data
1975-04-01
which C(i, j) 5 0 are defined. Thus D is an incomplete matrix, The problem is then to estimate the ve --tor D. D = (D(l),...D(N)) from the matrices C...had radar difficulties. The time period of interest was November; thus, August shipping densities were scaled to reflect the lighter traffic in that
Density estimation in tiger populations: combining information for strong inference
Gopalaswamy, Arjun M.; Royle, J. Andrew; Delampady, Mohan; Nichols, James D.; Karanth, K. Ullas; Macdonald, David W.
2012-01-01
A productive way forward in studies of animal populations is to efficiently make use of all the information available, either as raw data or as published sources, on critical parameters of interest. In this study, we demonstrate two approaches to the use of multiple sources of information on a parameter of fundamental interest to ecologists: animal density. The first approach produces estimates simultaneously from two different sources of data. The second approach was developed for situations in which initial data collection and analysis are followed up by subsequent data collection and prior knowledge is updated with new data using a stepwise process. Both approaches are used to estimate density of a rare and elusive predator, the tiger, by combining photographic and fecal DNA spatial capture–recapture data. The model, which combined information, provided the most precise estimate of density (8.5 ± 1.95 tigers/100 km2 [posterior mean ± SD]) relative to a model that utilized only one data source (photographic, 12.02 ± 3.02 tigers/100 km2 and fecal DNA, 6.65 ± 2.37 tigers/100 km2). Our study demonstrates that, by accounting for multiple sources of available information, estimates of animal density can be significantly improved.
Simplified large African carnivore density estimators from track indices
Ferreira, Sam M.; Funston, Paul J.; Somers, Michael J.
2016-01-01
Background The range, population size and trend of large carnivores are important parameters to assess their status globally and to plan conservation strategies. One can use linear models to assess population size and trends of large carnivores from track-based surveys on suitable substrates. The conventional approach of a linear model with intercept may not intercept at zero, but may fit the data better than linear model through the origin. We assess whether a linear regression through the origin is more appropriate than a linear regression with intercept to model large African carnivore densities and track indices. Methods We did simple linear regression with intercept analysis and simple linear regression through the origin and used the confidence interval for ß in the linear model y = αx + ß, Standard Error of Estimate, Mean Squares Residual and Akaike Information Criteria to evaluate the models. Results The Lion on Clay and Low Density on Sand models with intercept were not significant (P > 0.05). The other four models with intercept and the six models thorough origin were all significant (P < 0.05). The models using linear regression with intercept all included zero in the confidence interval for ß and the null hypothesis that ß = 0 could not be rejected. All models showed that the linear model through the origin provided a better fit than the linear model with intercept, as indicated by the Standard Error of Estimate and Mean Square Residuals. Akaike Information Criteria showed that linear models through the origin were better and that none of the linear models with intercept had substantial support. Discussion Our results showed that linear regression through the origin is justified over the more typical linear regression with intercept for all models we tested. A general model can be used to estimate large carnivore densities from track densities across species and study areas. The formula observed track density = 3.26 × carnivore density
Evaluating lidar point densities for effective estimation of aboveground biomass
Wu, Zhuoting; Dye, Dennis G.; Stoker, Jason M.; Vogel, John M.; Velasco, Miguel G.; Middleton, Barry R.
2016-01-01
The U.S. Geological Survey (USGS) 3D Elevation Program (3DEP) was recently established to provide airborne lidar data coverage on a national scale. As part of a broader research effort of the USGS to develop an effective remote sensing-based methodology for the creation of an operational biomass Essential Climate Variable (Biomass ECV) data product, we evaluated the performance of airborne lidar data at various pulse densities against Landsat 8 satellite imagery in estimating above ground biomass for forests and woodlands in a study area in east-central Arizona, U.S. High point density airborne lidar data, were randomly sampled to produce five lidar datasets with reduced densities ranging from 0.5 to 8 point(s)/m2, corresponding to the point density range of 3DEP to provide national lidar coverage over time. Lidar-derived aboveground biomass estimate errors showed an overall decreasing trend as lidar point density increased from 0.5 to 8 points/m2. Landsat 8-based aboveground biomass estimates produced errors larger than the lowest lidar point density of 0.5 point/m2, and therefore Landsat 8 observations alone were ineffective relative to airborne lidar for generating a Biomass ECV product, at least for the forest and woodland vegetation types of the Southwestern U.S. While a national Biomass ECV product with optimal accuracy could potentially be achieved with 3DEP data at 8 points/m2, our results indicate that even lower density lidar data could be sufficient to provide a national Biomass ECV product with accuracies significantly higher than that from Landsat observations alone.
Estimation of Enceladus Plume Density Using Cassini Flight Data
NASA Technical Reports Server (NTRS)
Wang, Eric K.; Lee, Allan Y.
2011-01-01
The Cassini spacecraft was launched on October 15, 1997 by a Titan 4B launch vehicle. After an interplanetary cruise of almost seven years, it arrived at Saturn on June 30, 2004. In 2005, Cassini completed three flybys of Enceladus, a small, icy satellite of Saturn. Observations made during these flybys confirmed the existence of water vapor plumes in the south polar region of Enceladus. Five additional low-altitude flybys of Enceladus were successfully executed in 2008-9 to better characterize these watery plumes. During some of these Enceladus flybys, the spacecraft attitude was controlled by a set of three reaction wheels. When the disturbance torque imparted on the spacecraft was predicted to exceed the control authority of the reaction wheels, thrusters were used to control the spacecraft attitude. Using telemetry data of reaction wheel rates or thruster on-times collected from four low-altitude Enceladus flybys (in 2008-10), one can reconstruct the time histories of the Enceladus plume jet density. The 1 sigma uncertainty of the estimated density is 5.9-6.7% (depending on the density estimation methodology employed). These plume density estimates could be used to confirm measurements made by other onboard science instruments and to support the modeling of Enceladus plume jets.
Estimating podocyte number and density using a single histologic section.
Venkatareddy, Madhusudan; Wang, Su; Yang, Yan; Patel, Sanjeevkumar; Wickman, Larysa; Nishizono, Ryuzoh; Chowdhury, Mahboob; Hodgin, Jeffrey; Wiggins, Paul A; Wiggins, Roger C
2014-05-01
The reduction in podocyte density to levels below a threshold value drives glomerulosclerosis and progression to ESRD. However, technical demands prohibit high-throughput application of conventional morphometry for estimating podocyte density. We evaluated a method for estimating podocyte density using single paraffin-embedded formalin-fixed sections. Podocyte nuclei were imaged using indirect immunofluorescence detection of antibodies against Wilms' tumor-1 or transducin-like enhancer of split 4. To account for the large size of podocyte nuclei in relation to section thickness, we derived a correction factor given by the equation CF=1/(D/T+1), where T is the tissue section thickness and D is the mean caliper diameter of podocyte nuclei. Normal values for D were directly measured in thick tissue sections and in 3- to 5-μm sections using calibrated imaging software. D values were larger for human podocyte nuclei than for rat or mouse nuclei (P<0.01). In addition, D did not vary significantly between human kidney biopsies at the time of transplantation, 3-6 months after transplantation, or with podocyte depletion associated with transplant glomerulopathy. In rat models, D values also did not vary with podocyte depletion, but increased approximately 10% with old age and in postnephrectomy kidney hypertrophy. A spreadsheet with embedded formulas was created to facilitate individualized podocyte density estimation upon input of measured values. The correction factor method was validated by comparison with other methods, and provided data comparable with prior data for normal human kidney transplant donors. This method for estimating podocyte density is applicable to high-throughput laboratory and clinical use.
Quantitative volumetric breast density estimation using phase contrast mammography
NASA Astrophysics Data System (ADS)
Wang, Zhentian; Hauser, Nik; Kubik-Huch, Rahel A.; D'Isidoro, Fabio; Stampanoni, Marco
2015-05-01
Phase contrast mammography using a grating interferometer is an emerging technology for breast imaging. It provides complementary information to the conventional absorption-based methods. Additional diagnostic values could be further obtained by retrieving quantitative information from the three physical signals (absorption, differential phase and small-angle scattering) yielded simultaneously. We report a non-parametric quantitative volumetric breast density estimation method by exploiting the ratio (dubbed the R value) of the absorption signal to the small-angle scattering signal. The R value is used to determine breast composition and the volumetric breast density (VBD) of the whole breast is obtained analytically by deducing the relationship between the R value and the pixel-wise breast density. The proposed method is tested by a phantom study and a group of 27 mastectomy samples. In the clinical evaluation, the estimated VBD values from both cranio-caudal (CC) and anterior-posterior (AP) views are compared with the ACR scores given by radiologists to the pre-surgical mammograms. The results show that the estimated VBD results using the proposed method are consistent with the pre-surgical ACR scores, indicating the effectiveness of this method in breast density estimation. A positive correlation is found between the estimated VBD and the diagnostic ACR score for both the CC view (p=0.033 ) and AP view (p=0.001 ). A linear regression between the results of the CC view and AP view showed a correlation coefficient γ = 0.77, which indicates the robustness of the proposed method and the quantitative character of the additional information obtained with our approach.
Structural damage localization using wavelet-based silhouette statistics
NASA Astrophysics Data System (ADS)
Jung, Uk; Koh, Bong-Hwan
2009-04-01
This paper introduces a new methodology for classifying and localizing structural damage in a truss structure. The application of wavelet analysis along with signal classification techniques in engineering problems allows us to discover novel characteristics that can be used for the diagnosis and classification of structural defects. This study exploits the data discriminating capability of silhouette statistics, which is eventually combined with the wavelet-based vertical energy threshold technique for the purpose of extracting damage-sensitive features and clustering signals of the same class. This threshold technique allows us to first obtain a suitable subset of the extracted or modified features of our data, i.e. good predictor sets should contain features that are strongly correlated to the characteristics of the data without considering the classification method used, although each of these features should be as uncorrelated with each other as possible. The silhouette statistics have been used to assess the quality of clustering by measuring how well an object is assigned to its corresponding cluster. We use this concept for the discriminant power function used in this paper. The simulation results of damage detection in a truss structure show that the approach proposed in this study can be successfully applied for locating both open- and breathing-type damage even in the presence of a considerable amount of process and measurement noise. Finally, a typical data mining tool such as classification and regression tree (CART) quantitatively evaluates the performance of the damage localization results in terms of the misclassification error.
Wavelet-based illumination invariant preprocessing in face recognition
NASA Astrophysics Data System (ADS)
Goh, Yi Zheng; Teoh, Andrew Beng Jin; Goh, Kah Ong Michael
2009-04-01
Performance of a contemporary two-dimensional face-recognition system has not been satisfied due to the variation in lighting. As a result, many works of solving illumination variation in face recognition have been carried out in past decades. Among them, the Illumination-Reflectance model is one of the generic models that is used to separate the individual reflectance and illumination components of an object. The illumination component can be removed by means of image-processing techniques to regain an intrinsic face feature, which is depicted by the reflectance component. We present a wavelet-based illumination invariant algorithm as a preprocessing technique for face recognition. On the basis of the multiresolution nature of wavelet analysis, we decompose both illumination and reflectance components from a face image in a systematic way. The illumination component wherein resides in the low-spatial-frequency subband can be eliminated efficiently. This technique works out very advantageously for achieving higher recognition performance on YaleB, CMU PIE, and FRGC face databases.
Wavelet-based embedded zerotree extension to color coding
NASA Astrophysics Data System (ADS)
Franques, Victoria T.
1998-03-01
Recently, a new image compression algorithm was developed which employs wavelet transform and a simple binary linear quantization scheme with an embedded coding technique to perform data compaction. This new family of coder, Embedded Zerotree Wavelet (EZW), provides a better compression performance than the current JPEG coding standard for low bit rates. Since EZW coding algorithm emerged, all of the published coding results related to this coding technique are on monochrome images. In this paper the author has enhanced the original coding algorithm to yield a better compression ratio, and has extended the wavelet-based zerotree coding to color images. Color imagery is often represented by several components, such as RGB, in which each component is generally processed separately. With color coding, each component could be compressed individually in the same manner as a monochrome image, therefore requiring a threefold increase in processing time. Most image coding standards employ de-correlated components, such as YIQ or Y, CB, CR and subsampling of the 'chroma' components, such coding technique is employed here. Results of the coding, including reconstructed images and coding performance, will be presented.
Coarse-to-fine wavelet-based airport detection
NASA Astrophysics Data System (ADS)
Li, Cheng; Wang, Shuigen; Pang, Zhaofeng; Zhao, Baojun
2015-10-01
Airport detection on optical remote sensing images has attracted great interest in the applications of military optics scout and traffic control. However, most of the popular techniques for airport detection from optical remote sensing images have three weaknesses: 1) Due to the characteristics of optical images, the detection results are often affected by imaging conditions, like weather situation and imaging distortion; and 2) optical images contain comprehensive information of targets, so that it is difficult for extracting robust features (e.g., intensity and textural information) to represent airport area; 3) the high resolution results in large data volume, which makes real-time processing limited. Most of the previous works mainly focus on solving one of those problems, and thus, the previous methods cannot achieve the balance of performance and complexity. In this paper, we propose a novel coarse-to-fine airport detection framework to solve aforementioned three issues using wavelet coefficients. The framework includes two stages: 1) an efficient wavelet-based feature extraction is adopted for multi-scale textural feature representation, and support vector machine(SVM) is exploited for classifying and coarsely deciding airport candidate region; and then 2) refined line segment detection is used to obtain runway and landing field of airport. Finally, airport recognition is achieved by applying the fine runway positioning to the candidate regions. Experimental results show that the proposed approach outperforms the existing algorithms in terms of detection accuracy and processing efficiency.
The Effect of Lidar Point Density on LAI Estimation
NASA Astrophysics Data System (ADS)
Cawse-Nicholson, K.; van Aardt, J. A.; Romanczyk, P.; Kelbe, D.; Bandyopadhyay, M.; Yao, W.; Krause, K.; Kampe, T. U.
2013-12-01
Leaf Area Index (LAI) is an important measure of forest health, biomass and carbon exchange, and is most commonly defined as the ratio of the leaf area to ground area. LAI is understood over large spatial scales and describes leaf properties over an entire forest, thus airborne imagery is ideal for capturing such data. Spectral metrics such as the normalized difference vegetation index (NDVI) have been used in the past for LAI estimation, but these metrics may saturate for high LAI values. Light detection and ranging (lidar) is an active remote sensing technology that emits light (most often at the wavelength 1064nm) and uses the return time to calculate the distance to intercepted objects. This yields information on three-dimensional structure and shape, which has been shown in recent studies to yield more accurate LAI estimates than NDVI. However, although lidar is a promising alternative for LAI estimation, minimum acquisition parameters (e.g. point density) required for accurate LAI retrieval are not yet well known. The objective of this study was to determine the minimum number of points per square meter that are required to describe the LAI measurements taken in-field. As part of a larger data collect, discrete lidar data were acquired by Kucera International Inc. over the Hemlock-Canadice State Forest, NY, USA in September 2012. The Leica ALS60 obtained point density of 12 points per square meter and effective ground sampling distance (GSD) of 0.15m. Up to three returns with intensities were recorded per pulse. As part of the same experiment, an AccuPAR LP-80 was used to collect LAI estimates at 25 sites on the ground. Sites were spaced approximately 80m apart and nine measurements were made in a grid pattern within a 20 x 20m site. Dominant species include Hemlock, Beech, Sugar Maple and Oak. This study has the benefit of very high-density data, which will enable a detailed map of intra-forest LAI. Understanding LAI at fine scales may be particularly useful
Wavelet-Based Adaptive Solvers on Multi-core Architectures for the Simulation of Complex Systems
NASA Astrophysics Data System (ADS)
Rossinelli, Diego; Bergdorf, Michael; Hejazialhosseini, Babak; Koumoutsakos, Petros
We build wavelet-based adaptive numerical methods for the simulation of advection dominated flows that develop multiple spatial scales, with an emphasis on fluid mechanics problems. Wavelet based adaptivity is inherently sequential and in this work we demonstrate that these numerical methods can be implemented in software that is capable of harnessing the capabilities of multi-core architectures while maintaining their computational efficiency. Recent designs in frameworks for multi-core software development allow us to rethink parallelism as task-based, where parallel tasks are specified and automatically mapped into physical threads. This way of exposing parallelism enables the parallelization of algorithms that were considered inherently sequential, such as wavelet-based adaptive simulations. In this paper we present a framework that combines wavelet-based adaptivity with the task-based parallelism. We demonstrate good scaling performance obtained by simulating diverse physical systems on different multi-core and SMP architectures using up to 16 cores.
Can modeling improve estimation of desert tortoise population densities?
Nussear, K.E.; Tracy, C.R.
2007-01-01
The federally listed desert tortoise (Gopherus agassizii) is currently monitored using distance sampling to estimate population densities. Distance sampling, as with many other techniques for estimating population density, assumes that it is possible to quantify the proportion of animals available to be counted in any census. Because desert tortoises spend much of their life in burrows, and the proportion of tortoises in burrows at any time can be extremely variable, this assumption is difficult to meet. This proportion of animals available to be counted is used as a correction factor (g0) in distance sampling and has been estimated from daily censuses of small populations of tortoises (6-12 individuals). These censuses are costly and produce imprecise estimates of g0 due to small sample sizes. We used data on tortoise activity from a large (N = 150) experimental population to model activity as a function of the biophysical attributes of the environment, but these models did not improve the precision of estimates from the focal populations. Thus, to evaluate how much of the variance in tortoise activity is apparently not predictable, we assessed whether activity on any particular day can predict activity on subsequent days with essentially identical environmental conditions. Tortoise activity was only weakly correlated on consecutive days, indicating that behavior was not repeatable or consistent among days with similar physical environments. ?? 2007 by the Ecological Society of America.
Can modeling improve estimation of desert tortoise population densities?
Nussear, Kenneth E; Tracy, C Richard
2007-03-01
The federally listed desert tortoise (Gopherus agassizii) is currently monitored using distance sampling to estimate population densities. Distance sampling, as with many other techniques for estimating population density, assumes that it is possible to quantify the proportion of animals available to be counted in any census. Because desert tortoises spend much of their life in burrows, and the proportion of tortoises in burrows at any time can be extremely variable, this assumption is difficult to meet. This proportion of animals available to be counted is used as a correction factor (g0) in distance sampling and has been estimated from daily censuses of small populations of tortoises (6-12 individuals). These censuses are costly and produce imprecise estimates of go due to small sample sizes. We used data on tortoise activity from a large (N = 150) experimental population to model activity as a function of the biophysical attributes of the environment, but these models did not improve the precision of estimates from the focal populations. Thus, to evaluate how much of the variance in tortoise activity is apparently not predictable, we assessed whether activity on any particular day can predict activity on subsequent days with essentially identical environmental conditions. Tortoise activity was only weakly correlated on consecutive days, indicating that behavior was not repeatable or consistent among days with similar physical environments.
Density Estimation of Simulation Output Using Exponential EPI-Splines
2013-12-01
ak+1,1, k = 1, 2, ..., N − 1. Pointwise Fisher information. We define the pointwise Fisher information of an exponential epi-spline density h at x to...are required to obtain meaningful results. All exponential epi-splines are computed under the assumptions of continuity, smoothness, pointwise Fisher...Kernel 0.4310 0.3536 In the exponential epi-spline estimates, we include continuity, differentiability, and pointwise Fisher information constraints with
Application of Density Estimation Methods to Datasets from a Glider
2013-09-30
Glider Elizabeth Thorp Küsel and Martin Siderius Portland State University Electrical and Computer Engineering Department 1900 SW 4th Ave...Fitting the glider with two recording sensors, instead of one, provides the opportunity to investigate other density estimation modalities ( Thomas and...Am. 134, 3506-3512. Carretta, J. V., Forney, K. A., Lowry , M. S., Barlow, J., Baker, J., Johnston, D., Hanson, B., Brownell Jr., R. L., Robbins
Kernel density estimator methods for Monte Carlo radiation transport
NASA Astrophysics Data System (ADS)
Banerjee, Kaushik
In this dissertation, the Kernel Density Estimator (KDE), a nonparametric probability density estimator, is studied and used to represent global Monte Carlo (MC) tallies. KDE is also employed to remove the singularities from two important Monte Carlo tallies, namely point detector and surface crossing flux tallies. Finally, KDE is also applied to accelerate the Monte Carlo fission source iteration for criticality problems. In the conventional MC calculation histograms are used to represent global tallies which divide the phase space into multiple bins. Partitioning the phase space into bins can add significant overhead to the MC simulation and the histogram provides only a first order approximation to the underlying distribution. The KDE method is attractive because it can estimate MC tallies in any location within the required domain without any particular bin structure. Post-processing of the KDE tallies is sufficient to extract detailed, higher order tally information for an arbitrary grid. The quantitative and numerical convergence properties of KDE tallies are also investigated and they are shown to be superior to conventional histograms as well as the functional expansion tally developed by Griesheimer. Monte Carlo point detector and surface crossing flux tallies are two widely used tallies but they suffer from an unbounded variance. As a result, the central limit theorem can not be used for these tallies to estimate confidence intervals. By construction, KDE tallies can be directly used to estimate flux at a point but the variance of this point estimate does not converge as 1/N, which is not unexpected for a point quantity. However, an improved approach is to modify both point detector and surface crossing flux tallies directly by using KDE within a variance reduction approach by taking advantage of the fact that KDE estimates the underlying probability density function. This methodology is demonstrated by several numerical examples and demonstrates that
Some Bayesian statistical techniques useful in estimating frequency and density
Johnson, D.H.
1977-01-01
This paper presents some elementary applications of Bayesian statistics to problems faced by wildlife biologists. Bayesian confidence limits for frequency of occurrence are shown to be generally superior to classical confidence limits. Population density can be estimated from frequency data if the species is sparsely distributed relative to the size of the sample plot. For other situations, limits are developed based on the normal distribution and prior knowledge that the density is non-negative, which insures that the lower confidence limit is non-negative. Conditions are described under which Bayesian confidence limits are superior to those calculated with classical methods; examples are also given on how prior knowledge of the density can be used to sharpen inferences drawn from a new sample.
Diagnosing osteoporosis: A new perspective on estimating bone density
NASA Astrophysics Data System (ADS)
Cassia-Moura, R.; Ramos, A. D.; Sousa, C. S.; Nascimento, T. A. S.; Valença, M. M.; Coelho, L. C. B. B.; Melo, S. B.
2007-07-01
Osteoporosis may be characterized by low bone density and its significance is expected to grow as the population of the world both increases and ages. Our purpose here is to model human bone mineral density estimated through dual-energy x-ray absorptiometry, using local volumetric distance spline interpolants. Interpolating the values means the construction of a function F(x,y,z) that mimics the relationship implied by the data (xi,yi,zi;fi), in such a way that F(xi,yi,zi)=fi, i=1,2,…,n, where x,y and z represent, respectively, age, weight and height. This strategy greatly enhances the ability to accurately express the patient's bone density measurements, with the potential to become a framework for bone densitometry in clinical practice. The usefulness of our model is demonstrated in 424 patients and the relevance of our results for diagnosing osteoporosis is discussed.
Volume estimation of multi-density nodules with thoracic CT
NASA Astrophysics Data System (ADS)
Gavrielides, Marios A.; Li, Qin; Zeng, Rongping; Myers, Kyle J.; Sahiner, Berkman; Petrick, Nicholas
2014-03-01
The purpose of this work was to quantify the effect of surrounding density on the volumetric assessment of lung nodules in a phantom CT study. Eight synthetic multidensity nodules were manufactured by enclosing spherical cores in larger spheres of double the diameter and with a different uniform density. Different combinations of outer/inner diameters (20/10mm, 10/5mm) and densities (100HU/-630HU, 10HU/- 630HU, -630HU/100HU, -630HU/-10HU) were created. The nodules were placed within an anthropomorphic phantom and scanned with a 16-detector row CT scanner. Ten repeat scans were acquired using exposures of 20, 100, and 200mAs, slice collimations of 16x0.75mm and 16x1.5mm, and pitch of 1.2, and were reconstructed with varying slice thicknesses (three for each collimation) using two reconstruction filters (medium and standard). The volumes of the inner nodule cores were estimated from the reconstructed CT data using a matched-filter approach with templates modeling the characteristics of the multi-density objects. Volume estimation of the inner nodule was assessed using percent bias (PB) and the standard deviation of percent error (SPE). The true volumes of the inner nodules were measured using micro CT imaging. Results show PB values ranging from -12.4 to 2.3% and SPE values ranging from 1.8 to 12.8%. This study indicates that the volume of multi-density nodules can be measured with relatively small percent bias (on the order of +/-12% or less) when accounting for the properties of surrounding densities. These findings can provide valuable information for understanding bias and variability in clinical measurements of nodules that also include local biological changes such as inflammation and necrosis.
Estimating black bear density using DNA data from hair snares
Gardner, B.; Royle, J. Andrew; Wegan, M.T.; Rainbolt, R.E.; Curtis, P.D.
2010-01-01
DNA-based mark-recapture has become a methodological cornerstone of research focused on bear species. The objective of such studies is often to estimate population size; however, doing so is frequently complicated by movement of individual bears. Movement affects the probability of detection and the assumption of closure of the population required in most models. To mitigate the bias caused by movement of individuals, population size and density estimates are often adjusted using ad hoc methods, including buffering the minimum polygon of the trapping array. We used a hierarchical, spatial capturerecapture model that contains explicit components for the spatial-point process that governs the distribution of individuals and their exposure to (via movement), and detection by, traps. We modeled detection probability as a function of each individual's distance to the trap and an indicator variable for previous capture to account for possible behavioral responses. We applied our model to a 2006 hair-snare study of a black bear (Ursus americanus) population in northern New York, USA. Based on the microsatellite marker analysis of collected hair samples, 47 individuals were identified. We estimated mean density at 0.20 bears/km2. A positive estimate of the indicator variable suggests that bears are attracted to baited sites; therefore, including a trap-dependence covariate is important when using bait to attract individuals. Bayesian analysis of the model was implemented in WinBUGS, and we provide the model specification. The model can be applied to any spatially organized trapping array (hair snares, camera traps, mist nests, etc.) to estimate density and can also account for heterogeneity and covariate information at the trap or individual level. ?? The Wildlife Society.
Thermospheric atomic oxygen density estimates using the EISCAT Svalbard Radar
NASA Astrophysics Data System (ADS)
Vickers, H.; Kosch, M. J.; Sutton, E. K.; Ogawa, Y.; La Hoz, C.
2012-12-01
The unique coupling of the ionized and neutral atmosphere through particle collisions allows an indirect study of the neutral atmosphere through measurements of ionospheric plasma parameters. We estimate the neutral density of the upper thermosphere above ~250 km with the EISCAT Svalbard Radar (ESR) using the year-long operations of the first year of the International Polar Year (IPY) from March 2007 to February 2008. The simplified momentum equation for atomic oxygen ions is used for field-aligned motion in the steady state, taking into account the opposing forces of plasma pressure gradient and gravity only. This restricts the technique to quiet geomagnetic periods, which applies to most of IPY during the recent very quiet solar minimum. Comparison with the MSIS model shows that at 250 km, close to the F-layer peak the ESR estimates of the atomic oxygen density are typically a factor 1.2 smaller than the MSIS model when data are averaged over the IPY. Differences between MSIS and ESR estimates are found also to depend on both season and magnetic disturbance, with largest discrepancies noted during winter months. At 350 km, very close agreement with the MSIS model is achieved without evidence of seasonal dependence. This altitude was also close to the orbital altitude of the CHAMP satellite during IPY, allowing a comparison of in-situ measurements and radar estimates of the neutral density. Using a total of 10 in-situ passes by the CHAMP satellite above Svalbard, we show that the estimates made using this technique fall within the error bars of the measurements. We show that the method works best in the height range ~300-400 km where our assumptions are satisfied and we anticipate that the technique should be suitable for future thermospheric studies related to geomagnetic storm activity and long-term climate change.
Structural Reliability Using Probability Density Estimation Methods Within NESSUS
NASA Technical Reports Server (NTRS)
Chamis, Chrisos C. (Technical Monitor); Godines, Cody Ric
2003-01-01
A reliability analysis studies a mathematical model of a physical system taking into account uncertainties of design variables and common results are estimations of a response density, which also implies estimations of its parameters. Some common density parameters include the mean value, the standard deviation, and specific percentile(s) of the response, which are measures of central tendency, variation, and probability regions, respectively. Reliability analyses are important since the results can lead to different designs by calculating the probability of observing safe responses in each of the proposed designs. All of this is done at the expense of added computational time as compared to a single deterministic analysis which will result in one value of the response out of many that make up the density of the response. Sampling methods, such as monte carlo (MC) and latin hypercube sampling (LHS), can be used to perform reliability analyses and can compute nonlinear response density parameters even if the response is dependent on many random variables. Hence, both methods are very robust; however, they are computationally expensive to use in the estimation of the response density parameters. Both methods are 2 of 13 stochastic methods that are contained within the Numerical Evaluation of Stochastic Structures Under Stress (NESSUS) program. NESSUS is a probabilistic finite element analysis (FEA) program that was developed through funding from NASA Glenn Research Center (GRC). It has the additional capability of being linked to other analysis programs; therefore, probabilistic fluid dynamics, fracture mechanics, and heat transfer are only a few of what is possible with this software. The LHS method is the newest addition to the stochastic methods within NESSUS. Part of this work was to enhance NESSUS with the LHS method. The new LHS module is complete, has been successfully integrated with NESSUS, and been used to study four different test cases that have been
Wavelet-based AR-SVM for health monitoring of smart structures
NASA Astrophysics Data System (ADS)
Kim, Yeesock; Chong, Jo Woon; Chon, Ki H.; Kim, JungMi
2013-01-01
This paper proposes a novel structural health monitoring framework for damage detection of smart structures. The framework is developed through the integration of the discrete wavelet transform, an autoregressive (AR) model, damage-sensitive features, and a support vector machine (SVM). The steps of the method are the following: (1) the wavelet-based AR (WAR) model estimates vibration signals obtained from both the undamaged and damaged smart structures under a variety of random signals; (2) a new damage-sensitive feature is formulated in terms of the AR parameters estimated from the structural velocity responses; and then (3) the SVM is applied to each group of damaged and undamaged data sets in order to optimally separate them into either damaged or healthy groups. To demonstrate the effectiveness of the proposed structural health monitoring framework, a three-story smart building equipped with a magnetorheological (MR) damper under artificial earthquake signals is studied. It is shown from the simulation that the proposed health monitoring scheme is effective in detecting damage of the smart structures in an efficient way.
Improving 3D Wavelet-Based Compression of Hyperspectral Images
NASA Technical Reports Server (NTRS)
Klimesh, Matthew; Kiely, Aaron; Xie, Hua; Aranki, Nazeeh
2009-01-01
Two methods of increasing the effectiveness of three-dimensional (3D) wavelet-based compression of hyperspectral images have been developed. (As used here, images signifies both images and digital data representing images.) The methods are oriented toward reducing or eliminating detrimental effects of a phenomenon, referred to as spectral ringing, that is described below. In 3D wavelet-based compression, an image is represented by a multiresolution wavelet decomposition consisting of several subbands obtained by applying wavelet transforms in the two spatial dimensions corresponding to the two spatial coordinate axes of the image plane, and by applying wavelet transforms in the spectral dimension. Spectral ringing is named after the more familiar spatial ringing (spurious spatial oscillations) that can be seen parallel to and near edges in ordinary images reconstructed from compressed data. These ringing phenomena are attributable to effects of quantization. In hyperspectral data, the individual spectral bands play the role of edges, causing spurious oscillations to occur in the spectral dimension. In the absence of such corrective measures as the present two methods, spectral ringing can manifest itself as systematic biases in some reconstructed spectral bands and can reduce the effectiveness of compression of spatially-low-pass subbands. One of the two methods is denoted mean subtraction. The basic idea of this method is to subtract mean values from spatial planes of spatially low-pass subbands prior to encoding, because (a) such spatial planes often have mean values that are far from zero and (b) zero-mean data are better suited for compression by methods that are effective for subbands of two-dimensional (2D) images. In this method, after the 3D wavelet decomposition is performed, mean values are computed for and subtracted from each spatial plane of each spatially-low-pass subband. The resulting data are converted to sign-magnitude form and compressed in a
Embedded wavelet-based face recognition under variable position
NASA Astrophysics Data System (ADS)
Cotret, Pascal; Chevobbe, Stéphane; Darouich, Mehdi
2015-02-01
For several years, face recognition has been a hot topic in the image processing field: this technique is applied in several domains such as CCTV, electronic devices delocking and so on. In this context, this work studies the efficiency of a wavelet-based face recognition method in terms of subject position robustness and performance on various systems. The use of wavelet transform has a limited impact on the position robustness of PCA-based face recognition. This work shows, for a well-known database (Yale face database B*), that subject position in a 3D space can vary up to 10% of the original ROI size without decreasing recognition rates. Face recognition is performed on approximation coefficients of the image wavelet transform: results are still satisfying after 3 levels of decomposition. Furthermore, face database size can be divided by a factor 64 (22K with K = 3). In the context of ultra-embedded vision systems, memory footprint is one of the key points to be addressed; that is the reason why compression techniques such as wavelet transform are interesting. Furthermore, it leads to a low-complexity face detection stage compliant with limited computation resources available on such systems. The approach described in this work is tested on three platforms from a standard x86-based computer towards nanocomputers such as RaspberryPi and SECO boards. For K = 3 and a database with 40 faces, the execution mean time for one frame is 0.64 ms on a x86-based computer, 9 ms on a SECO board and 26 ms on a RaspberryPi (B model).
Combining Ratio Estimation for Low Density Parity Check (LDPC) Coding
NASA Technical Reports Server (NTRS)
Mahmoud, Saad; Hi, Jianjun
2012-01-01
The Low Density Parity Check (LDPC) Code decoding algorithm make use of a scaled receive signal derived from maximizing the log-likelihood ratio of the received signal. The scaling factor (often called the combining ratio) in an AWGN channel is a ratio between signal amplitude and noise variance. Accurately estimating this ratio has shown as much as 0.6 dB decoding performance gain. This presentation briefly describes three methods for estimating the combining ratio: a Pilot-Guided estimation method, a Blind estimation method, and a Simulation-Based Look-Up table. The Pilot Guided Estimation method has shown that the maximum likelihood estimates of signal amplitude is the mean inner product of the received sequence and the known sequence, the attached synchronization marker (ASM) , and signal variance is the difference of the mean of the squared received sequence and the square of the signal amplitude. This method has the advantage of simplicity at the expense of latency since several frames worth of ASMs. The Blind estimation method s maximum likelihood estimator is the average of the product of the received signal with the hyperbolic tangent of the product combining ratio and the received signal. The root of this equation can be determined by an iterative binary search between 0 and 1 after normalizing the received sequence. This method has the benefit of requiring one frame of data to estimate the combining ratio which is good for faster changing channels compared to the previous method, however it is computationally expensive. The final method uses a look-up table based on prior simulated results to determine signal amplitude and noise variance. In this method the received mean signal strength is controlled to a constant soft decision value. The magnitude of the deviation is averaged over a predetermined number of samples. This value is referenced in a look up table to determine the combining ratio that prior simulation associated with the average magnitude of
NASA Astrophysics Data System (ADS)
Koziol, Piotr
2016-10-01
New approaches allowing effective analysis of railway structures dynamic behaviour are needed for appropriate modelling and understanding of phenomena associated with train transportation. The literature highlights the fact that nonlinear assumptions are of importance in dynamic analysis of railway tracks. This paper presents wavelet based semi-analytical solution for the infinite Euler-Bernoulli beam resting on a nonlinear foundation and subjected to a set of moving forces, being representation of railway track with moving train, along with its preliminary experimental validation. It is shown that this model, although very simplified, with an assumption of viscous damping of foundation, can be considered as a good enough approximation of realistic structures behaviour. The steady-state response of the beam is obtained by applying the Galilean co-ordinate system and the Adomian's decomposition method combined with coiflet based approximation, leading to analytical estimation of transverse displacements. The applied approach, using parameters taken from real measurements carried out on the Polish Railways network for fast train Pendolino EMU-250, shows ability of the proposed method to analyse parametrically dynamic systems associated with transportation. The obtained results are in accordance with measurement data in wide range of physical parameters, which can be treated as a validation of the developed wavelet based approach. The conducted investigation is supplemented by several numerical examples.
Khandoker, Ahsan H; Karmakar, Chandan K; Begg, Rezaul K; Palaniswami, Marimuthu
2007-01-01
As humans age or are influenced by pathology of the neuromuscular system, gait patterns are known to adjust, accommodating for reduced function in the balance control system. The aim of this study was to investigate the effectiveness of a wavelet based multiscale analysis of a gait variable [minimum toe clearance (MTC)] in deriving indexes for understanding age-related declines in gait performance and screening of balance impairments in the elderly. MTC during walking on a treadmill for 30 healthy young, 27 healthy elderly and 10 falls risk elderly subjects with a history of tripping falls were analyzed. The MTC signal from each subject was decomposed to eight detailed signals at different wavelet scales by using the discrete wavelet transform. The variances of detailed signals at scales 8 to 1 were calculated. The multiscale exponent (beta) was then estimated from the slope of the variance progression at successive scales. The variance at scale 5 was significantly (p<0.01) different between young and healthy elderly group. Results also suggest that the Beta between scales 1 to 2 are effective for recognizing falls risk gait patterns. Results have implication for quantifying gait dynamics in normal, ageing and pathological conditions. Early detection of gait pattern changes due to ageing and balance impairments using wavelet-based multiscale analysis might provide the opportunity to initiate preemptive measures to be undertaken to avoid injurious falls.
A Projection and Density Estimation Method for Knowledge Discovery
Stanski, Adam; Hellwich, Olaf
2012-01-01
A key ingredient to modern data analysis is probability density estimation. However, it is well known that the curse of dimensionality prevents a proper estimation of densities in high dimensions. The problem is typically circumvented by using a fixed set of assumptions about the data, e.g., by assuming partial independence of features, data on a manifold or a customized kernel. These fixed assumptions limit the applicability of a method. In this paper we propose a framework that uses a flexible set of assumptions instead. It allows to tailor a model to various problems by means of 1d-decompositions. The approach achieves a fast runtime and is not limited by the curse of dimensionality as all estimations are performed in 1d-space. The wide range of applications is demonstrated at two very different real world examples. The first is a data mining software that allows the fully automatic discovery of patterns. The software is publicly available for evaluation. As a second example an image segmentation method is realized. It achieves state of the art performance on a benchmark dataset although it uses only a fraction of the training data and very simple features. PMID:23049675
Online Reinforcement Learning Using a Probability Density Estimation.
Agostini, Alejandro; Celaya, Enric
2017-01-01
Function approximation in online, incremental, reinforcement learning needs to deal with two fundamental problems: biased sampling and nonstationarity. In this kind of task, biased sampling occurs because samples are obtained from specific trajectories dictated by the dynamics of the environment and are usually concentrated in particular convergence regions, which in the long term tend to dominate the approximation in the less sampled regions. The nonstationarity comes from the recursive nature of the estimations typical of temporal difference methods. This nonstationarity has a local profile, varying not only along the learning process but also along different regions of the state space. We propose to deal with these problems using an estimation of the probability density of samples represented with a gaussian mixture model. To deal with the nonstationarity problem, we use the common approach of introducing a forgetting factor in the updating formula. However, instead of using the same forgetting factor for the whole domain, we make it dependent on the local density of samples, which we use to estimate the nonstationarity of the function at any given input point. To address the biased sampling problem, the forgetting factor applied to each mixture component is modulated according to the new information provided in the updating, rather than forgetting depending only on time, thus avoiding undesired distortions of the approximation in less sampled regions.
Wavelet-based multiscale performance analysis: An approach to assess and improve hydrological models
NASA Astrophysics Data System (ADS)
Rathinasamy, Maheswaran; Khosa, Rakesh; Adamowski, Jan; ch, Sudheer; Partheepan, G.; Anand, Jatin; Narsimlu, Boini
2014-12-01
The temporal dynamics of hydrological processes are spread across different time scales and, as such, the performance of hydrological models cannot be estimated reliably from global performance measures that assign a single number to the fit of a simulated time series to an observed reference series. Accordingly, it is important to analyze model performance at different time scales. Wavelets have been used extensively in the area of hydrological modeling for multiscale analysis, and have been shown to be very reliable and useful in understanding dynamics across time scales and as these evolve in time. In this paper, a wavelet-based multiscale performance measure for hydrological models is proposed and tested (i.e., Multiscale Nash-Sutcliffe Criteria and Multiscale Normalized Root Mean Square Error). The main advantage of this method is that it provides a quantitative measure of model performance across different time scales. In the proposed approach, model and observed time series are decomposed using the Discrete Wavelet Transform (known as the à trous wavelet transform), and performance measures of the model are obtained at each time scale. The applicability of the proposed method was explored using various case studies--both real as well as synthetic. The synthetic case studies included various kinds of errors (e.g., timing error, under and over prediction of high and low flows) in outputs from a hydrologic model. The real time case studies investigated in this study included simulation results of both the process-based Soil Water Assessment Tool (SWAT) model, as well as statistical models, namely the Coupled Wavelet-Volterra (WVC), Artificial Neural Network (ANN), and Auto Regressive Moving Average (ARMA) methods. For the SWAT model, data from Wainganga and Sind Basin (India) were used, while for the Wavelet Volterra, ANN and ARMA models, data from the Cauvery River Basin (India) and Fraser River (Canada) were used. The study also explored the effect of the
Effect of packing density on strain estimation by Fry method
NASA Astrophysics Data System (ADS)
Srivastava, Deepak; Ojha, Arun
2015-04-01
Fry method is a graphical technique that uses relative movement of material points, typically the grain centres or centroids, and yields the finite strain ellipse as the central vacancy of a point distribution. Application of the Fry method assumes an anticlustered and isotropic grain centre distribution in undistorted samples. This assumption is, however, difficult to test in practice. As an alternative, the sedimentological degree of sorting is routinely used as an approximation for the degree of clustering and anisotropy. The effect of the sorting on the Fry method has already been explored by earlier workers. This study tests the effect of the tightness of packing, the packing density%, which equals to the ratio% of the area occupied by all the grains and the total area of the sample. A practical advantage of using the degree of sorting or the packing density% is that these parameters, unlike the degree of clustering or anisotropy, do not vary during a constant volume homogeneous distortion. Using the computer graphics simulations and the programming, we approach the issue of packing density in four steps; (i) generation of several sets of random point distributions such that each set has same degree of sorting but differs from the other sets with respect to the packing density%, (ii) two-dimensional homogeneous distortion of each point set by various known strain ratios and orientation, (iii) estimation of strain in each distorted point set by the Fry method, and, (iv) error estimation by comparing the known strain and those given by the Fry method. Both the absolute errors and the relative root mean squared errors give consistent results. For a given degree of sorting, the Fry method gives better results in the samples having greater than 30% packing density. This is because the grain centre distributions show stronger clustering and a greater degree of anisotropy with the decrease in the packing density. As compared to the degree of sorting alone, a
Effect of Random Clustering on Surface Damage Density Estimates
Matthews, M J; Feit, M D
2007-10-29
Identification and spatial registration of laser-induced damage relative to incident fluence profiles is often required to characterize the damage properties of laser optics near damage threshold. Of particular interest in inertial confinement laser systems are large aperture beam damage tests (>1cm{sup 2}) where the number of initiated damage sites for {phi}>14J/cm{sup 2} can approach 10{sup 5}-10{sup 6}, requiring automatic microscopy counting to locate and register individual damage sites. However, as was shown for the case of bacteria counting in biology decades ago, random overlapping or 'clumping' prevents accurate counting of Poisson-distributed objects at high densities, and must be accounted for if the underlying statistics are to be understood. In this work we analyze the effect of random clumping on damage initiation density estimates at fluences above damage threshold. The parameter {psi} = a{rho} = {rho}/{rho}{sub 0}, where a = 1/{rho}{sub 0} is the mean damage site area and {rho} is the mean number density, is used to characterize the onset of clumping, and approximations based on a simple model are used to derive an expression for clumped damage density vs. fluence and damage site size. The influence of the uncorrected {rho} vs. {phi} curve on damage initiation probability predictions is also discussed.
Density Estimation for New Solid and Liquid Explosives
1977-02-17
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Estimation of probability densities using scale-free field theories.
Kinney, Justin B
2014-07-01
The question of how best to estimate a continuous probability density from finite data is an intriguing open problem at the interface of statistics and physics. Previous work has argued that this problem can be addressed in a natural way using methods from statistical field theory. Here I describe results that allow this field-theoretic approach to be rapidly and deterministically computed in low dimensions, making it practical for use in day-to-day data analysis. Importantly, this approach does not impose a privileged length scale for smoothness of the inferred probability density, but rather learns a natural length scale from the data due to the tradeoff between goodness of fit and an Occam factor. Open source software implementing this method in one and two dimensions is provided.
Estimation of probability densities using scale-free field theories
NASA Astrophysics Data System (ADS)
Kinney, Justin B.
2014-07-01
The question of how best to estimate a continuous probability density from finite data is an intriguing open problem at the interface of statistics and physics. Previous work has argued that this problem can be addressed in a natural way using methods from statistical field theory. Here I describe results that allow this field-theoretic approach to be rapidly and deterministically computed in low dimensions, making it practical for use in day-to-day data analysis. Importantly, this approach does not impose a privileged length scale for smoothness of the inferred probability density, but rather learns a natural length scale from the data due to the tradeoff between goodness of fit and an Occam factor. Open source software implementing this method in one and two dimensions is provided.
NASA Astrophysics Data System (ADS)
Lee, J.
2015-12-01
The topside ionophere have lacks of information about plasma, but it is important for human beings and scientific applicaiton. We establish an estimation method for electron density profile using Langmuir Probe and GPS data of CHAMP satellite and have comparision the method results with other satellites measurements. In order to develop the model, hydrostatic mapping function, vertical scale height, and vertical TEC(Total Electron Contents) are used for calculations. The electron density and GPS data with hydrostatic mapping function give the vertical TEC and after some algebra using exponential model of density profile give the vertical scale height of ionosphere. The scale height have about 10^2~10^3 km order of magnitude so it can be used exponential model again since the altitude of CHAMP. Therefore, apply the scale height to exponoential model we can get the topside electron density profile. The result of the density profile model can be compared with other satellite data as STSAT-1, ROCSAT, DMSP which is measured the electron density in similar Local Time, Latitude, Longitude but above the CHAMP. This comparison shows the method is accecptable and it can be applied to other reseach for topside ionosphere.
Robust wavelet-based super-resolution reconstruction: theory and algorithm.
Ji, Hui; Fermüller, Cornelia
2009-04-01
We present an analysis and algorithm for the problem of super-resolution imaging, that is the reconstruction of HR (high-resolution) images from a sequence of LR (low-resolution) images. Super-resolution reconstruction entails solutions to two problems. One is the alignment of image frames. The other is the reconstruction of a HR image from multiple aligned LR images. Both are important for the performance of super-resolution imaging. Image alignment is addressed with a new batch algorithm, which simultaneously estimates the homographies between multiple image frames by enforcing the surface normal vectors to be the same. This approach can handle longer video sequences quite well. Reconstruction is addressed with a wavelet-based iterative reconstruction algorithm with an efficient denoising scheme. The technique is based on a new analysis of video formation. At a high level our method could be described as a better-conditioned iterative back projection scheme with an efficient regularization criteria in each iteration step. Experiments with both simulated and real data demonstrate that our approach has better performance than existing super-resolution methods. It can remove even large amounts of mixed noise without creating artifacts.
Improved 3D wavelet-based de-noising of fMRI data
NASA Astrophysics Data System (ADS)
Khullar, Siddharth; Michael, Andrew M.; Correa, Nicolle; Adali, Tulay; Baum, Stefi A.; Calhoun, Vince D.
2011-03-01
Functional MRI (fMRI) data analysis deals with the problem of detecting very weak signals in very noisy data. Smoothing with a Gaussian kernel is often used to decrease noise at the cost of losing spatial specificity. We present a novel wavelet-based 3-D technique to remove noise in fMRI data while preserving the spatial features in the component maps obtained through group independent component analysis (ICA). Each volume is decomposed into eight volumetric sub-bands using a separable 3-D stationary wavelet transform. Each of the detail sub-bands are then treated through the main denoising module. This module facilitates computation of shrinkage factors through a hierarchical framework. It utilizes information iteratively from the sub-band at next higher level to estimate denoised coefficients at the current level. These de-noised sub-bands are then reconstructed back to the spatial domain using an inverse wavelet transform. Finally, the denoised group fMRI data is analyzed using ICA where the data is decomposed in to clusters of functionally correlated voxels (spatial maps) as indicators of task-related neural activity. The proposed method enables the preservation of shape of the actual activation regions associated with the BOLD activity. In addition it is able to achieve high specificity as compared to the conventionally used FWHM (full width half maximum) Gaussian kernels for smoothing fMRI data.
A Wavelet-Based Noise Reduction Algorithm and Its Clinical Evaluation in Cochlear Implants
Ye, Hua; Deng, Guang; Mauger, Stefan J.; Hersbach, Adam A.; Dawson, Pam W.; Heasman, John M.
2013-01-01
Noise reduction is often essential for cochlear implant (CI) recipients to achieve acceptable speech perception in noisy environments. Most noise reduction algorithms applied to audio signals are based on time-frequency representations of the input, such as the Fourier transform. Algorithms based on other representations may also be able to provide comparable or improved speech perception and listening quality improvements. In this paper, a noise reduction algorithm for CI sound processing is proposed based on the wavelet transform. The algorithm uses a dual-tree complex discrete wavelet transform followed by shrinkage of the wavelet coefficients based on a statistical estimation of the variance of the noise. The proposed noise reduction algorithm was evaluated by comparing its performance to those of many existing wavelet-based algorithms. The speech transmission index (STI) of the proposed algorithm is significantly better than other tested algorithms for the speech-weighted noise of different levels of signal to noise ratio. The effectiveness of the proposed system was clinically evaluated with CI recipients. A significant improvement in speech perception of 1.9 dB was found on average in speech weighted noise. PMID:24086605
The use of spectrophotometry to estimate melanin density in Caucasians.
Dwyer, T; Muller, H K; Blizzard, L; Ashbolt, R; Phillips, G
1998-03-01
The density of cutaneous melanin may be the property of the skin that protects it from damage by solar radiation, but there is not an accepted, noninvasive method of measuring it. To determine whether the density of cutaneous melanin can be estimated from reflectance of visible light by the skin, reflectance of 15-nm wavebands of light by the skin of the inner upper arm of each of 82 volunteers was measured at 20-nm intervals with a Minolta 508 spectrophotometer. A 3-mm skin biopsy was then taken from the same site, and four nonserial sections of it were stained with Masson Fontana for melanin. The melanin content of the basal area was calculated using the NIH Image analysis system. We show that cutaneous melanin in Caucasians can be estimated by the difference between two measurements of reflectance of visible light by the skin: those at wavelengths 400 and 420 nm. This new spectrophotometric measurement was more highly correlated (r = 0.68) with the histological measurements of cutaneous melanin than was skin reflectance of light of wavelength 680 nm (r = 0.33). Reflectances in the range of 650-700 nm have been used previously in skin cancer research. This relatively accurate measurement of melanin is quick and noninvasive and can be readily used in the field. It should provide improved discrimination of individual susceptibility to epidermal tumors in Caucasians and information about melanin's biological role in the causation of skin cancer.
Change-in-ratio density estimator for feral pigs is less biased than closed mark-recapture estimates
Hanson, L.B.; Grand, J.B.; Mitchell, M.S.; Jolley, D.B.; Sparklin, B.D.; Ditchkoff, S.S.
2008-01-01
Closed-population capture-mark-recapture (CMR) methods can produce biased density estimates for species with low or heterogeneous detection probabilities. In an attempt to address such biases, we developed a density-estimation method based on the change in ratio (CIR) of survival between two populations where survival, calculated using an open-population CMR model, is known to differ. We used our method to estimate density for a feral pig (Sus scrofa) population on Fort Benning, Georgia, USA. To assess its validity, we compared it to an estimate of the minimum density of pigs known to be alive and two estimates based on closed-population CMR models. Comparison of the density estimates revealed that the CIR estimator produced a density estimate with low precision that was reasonable with respect to minimum known density. By contrast, density point estimates using the closed-population CMR models were less than the minimum known density, consistent with biases created by low and heterogeneous capture probabilities for species like feral pigs that may occur in low density or are difficult to capture. Our CIR density estimator may be useful for tracking broad-scale, long-term changes in species, such as large cats, for which closed CMR models are unlikely to work. ?? CSIRO 2008.
Probability Density and CFAR Threshold Estimation for Hyperspectral Imaging
Clark, G A
2004-09-21
The work reported here shows the proof of principle (using a small data set) for a suite of algorithms designed to estimate the probability density function of hyperspectral background data and compute the appropriate Constant False Alarm Rate (CFAR) matched filter decision threshold for a chemical plume detector. Future work will provide a thorough demonstration of the algorithms and their performance with a large data set. The LASI (Large Aperture Search Initiative) Project involves instrumentation and image processing for hyperspectral images of chemical plumes in the atmosphere. The work reported here involves research and development on algorithms for reducing the false alarm rate in chemical plume detection and identification algorithms operating on hyperspectral image cubes. The chemical plume detection algorithms to date have used matched filters designed using generalized maximum likelihood ratio hypothesis testing algorithms [1, 2, 5, 6, 7, 12, 10, 11, 13]. One of the key challenges in hyperspectral imaging research is the high false alarm rate that often results from the plume detector [1, 2]. The overall goal of this work is to extend the classical matched filter detector to apply Constant False Alarm Rate (CFAR) methods to reduce the false alarm rate, or Probability of False Alarm P{sub FA} of the matched filter [4, 8, 9, 12]. A detector designer is interested in minimizing the probability of false alarm while simultaneously maximizing the probability of detection P{sub D}. This is summarized by the Receiver Operating Characteristic Curve (ROC) [10, 11], which is actually a family of curves depicting P{sub D} vs. P{sub FA}parameterized by varying levels of signal to noise (or clutter) ratio (SNR or SCR). Often, it is advantageous to be able to specify a desired P{sub FA} and develop a ROC curve (P{sub D} vs. decision threshold r{sub 0}) for that case. That is the purpose of this work. Specifically, this work develops a set of algorithms and MATLAB
Estimating tropical-forest density profiles from multibaseline interferometric SAR
NASA Technical Reports Server (NTRS)
Treuhaft, Robert; Chapman, Bruce; dos Santos, Joao Roberto; Dutra, Luciano; Goncalves, Fabio; da Costa Freitas, Corina; Mura, Jose Claudio; de Alencastro Graca, Paulo Mauricio
2006-01-01
Vertical profiles of forest density are potentially robust indicators of forest biomass, fire susceptibility and ecosystem function. Tropical forests, which are among the most dense and complicated targets for remote sensing, contain about 45% of the world's biomass. Remote sensing of tropical forest structure is therefore an important component to global biomass and carbon monitoring. This paper shows preliminary results of a multibasline interfereomtric SAR (InSAR) experiment over primary, secondary, and selectively logged forests at La Selva Biological Station in Costa Rica. The profile shown results from inverse Fourier transforming 8 of the 18 baselines acquired. A profile is shown compared to lidar and field measurements. Results are highly preliminary and for qualitative assessment only. Parameter estimation will eventually replace Fourier inversion as the means to producing profiles.
Cortical cell and neuron density estimates in one chimpanzee hemisphere.
Collins, Christine E; Turner, Emily C; Sawyer, Eva Kille; Reed, Jamie L; Young, Nicole A; Flaherty, David K; Kaas, Jon H
2016-01-19
The density of cells and neurons in the neocortex of many mammals varies across cortical areas and regions. This variability is, perhaps, most pronounced in primates. Nonuniformity in the composition of cortex suggests regions of the cortex have different specializations. Specifically, regions with densely packed neurons contain smaller neurons that are activated by relatively few inputs, thereby preserving information, whereas regions that are less densely packed have larger neurons that have more integrative functions. Here we present the numbers of cells and neurons for 742 discrete locations across the neocortex in a chimpanzee. Using isotropic fractionation and flow fractionation methods for cell and neuron counts, we estimate that neocortex of one hemisphere contains 9.5 billion cells and 3.7 billion neurons. Primary visual cortex occupies 35 cm(2) of surface, 10% of the total, and contains 737 million densely packed neurons, 20% of the total neurons contained within the hemisphere. Other areas of high neuron packing include secondary visual areas, somatosensory cortex, and prefrontal granular cortex. Areas of low levels of neuron packing density include motor and premotor cortex. These values reflect those obtained from more limited samples of cortex in humans and other primates.
Estimating Foreign-Object-Debris Density from Photogrammetry Data
NASA Technical Reports Server (NTRS)
Long, Jason; Metzger, Philip; Lane, John
2013-01-01
Within the first few seconds after launch of STS-124, debris traveling vertically near the vehicle was captured on two 16-mm film cameras surrounding the launch pad. One particular piece of debris caught the attention of engineers investigating the release of the flame trench fire bricks. The question to be answered was if the debris was a fire brick, and if it represented the first bricks that were ejected from the flame trench wall, or was the object one of the pieces of debris normally ejected from the vehicle during launch. If it was typical launch debris, such as SRB throat plug foam, why was it traveling vertically and parallel to the vehicle during launch, instead of following its normal trajectory, flying horizontally toward the north perimeter fence? By utilizing the Runge-Kutta integration method for velocity and the Verlet integration method for position, a method that suppresses trajectory computational instabilities due to noisy position data was obtained. This combination of integration methods provides a means to extract the best estimate of drag force and drag coefficient under the non-ideal conditions of limited position data. This integration strategy leads immediately to the best possible estimate of object density, within the constraints of unknown particle shape. These types of calculations do not exist in readily available off-the-shelf simulation software, especially where photogrammetry data is needed as an input.
NASA Astrophysics Data System (ADS)
Simoni, Daniele; Lengani, Davide; Guida, Roberto
2016-09-01
The transition process of the boundary layer growing over a flat plate with pressure gradient simulating the suction side of a low-pressure turbine blade and elevated free-stream turbulence intensity level has been analyzed by means of PIV and hot-wire measurements. A detailed view of the instantaneous flow field in the wall-normal plane highlights the physics characterizing the complex process leading to the formation of large-scale coherent structures during breaking down of the ordered motion of the flow, thus generating randomized oscillations (i.e., turbulent spots). This analysis gives the basis for the development of a new procedure aimed at determining the intermittency function describing (statistically) the transition process. To this end, a wavelet-based method has been employed for the identification of the large-scale structures created during the transition process. Successively, a probability density function of these events has been defined so that an intermittency function is deduced. This latter strictly corresponds to the intermittency function of the transitional flow computed trough a classic procedure based on hot-wire data. The agreement between the two procedures in the intermittency shape and spot production rate proves the capability of the method in providing the statistical representation of the transition process. The main advantages of the procedure here proposed concern with its applicability to PIV data; it does not require a threshold level to discriminate first- and/or second-order time-derivative of hot-wire time traces (that makes the method not influenced by the operator); and it provides a clear evidence of the connection between the flow physics and the statistical representation of transition based on theory of turbulent spot propagation.
Learning Multisensory Integration and Coordinate Transformation via Density Estimation
Sabes, Philip N.
2013-01-01
Sensory processing in the brain includes three key operations: multisensory integration—the task of combining cues into a single estimate of a common underlying stimulus; coordinate transformations—the change of reference frame for a stimulus (e.g., retinotopic to body-centered) effected through knowledge about an intervening variable (e.g., gaze position); and the incorporation of prior information. Statistically optimal sensory processing requires that each of these operations maintains the correct posterior distribution over the stimulus. Elements of this optimality have been demonstrated in many behavioral contexts in humans and other animals, suggesting that the neural computations are indeed optimal. That the relationships between sensory modalities are complex and plastic further suggests that these computations are learned—but how? We provide a principled answer, by treating the acquisition of these mappings as a case of density estimation, a well-studied problem in machine learning and statistics, in which the distribution of observed data is modeled in terms of a set of fixed parameters and a set of latent variables. In our case, the observed data are unisensory-population activities, the fixed parameters are synaptic connections, and the latent variables are multisensory-population activities. In particular, we train a restricted Boltzmann machine with the biologically plausible contrastive-divergence rule to learn a range of neural computations not previously demonstrated under a single approach: optimal integration; encoding of priors; hierarchical integration of cues; learning when not to integrate; and coordinate transformation. The model makes testable predictions about the nature of multisensory representations. PMID:23637588
Wavelet-based fMRI analysis: 3-D denoising, signal separation, and validation metrics.
Khullar, Siddharth; Michael, Andrew; Correa, Nicolle; Adali, Tulay; Baum, Stefi A; Calhoun, Vince D
2011-02-14
We present a novel integrated wavelet-domain based framework (w-ICA) for 3-D denoising functional magnetic resonance imaging (fMRI) data followed by source separation analysis using independent component analysis (ICA) in the wavelet domain. We propose the idea of a 3-D wavelet-based multi-directional denoising scheme where each volume in a 4-D fMRI data set is sub-sampled using the axial, sagittal and coronal geometries to obtain three different slice-by-slice representations of the same data. The filtered intensity value of an arbitrary voxel is computed as an expected value of the denoised wavelet coefficients corresponding to the three viewing geometries for each sub-band. This results in a robust set of denoised wavelet coefficients for each voxel. Given the de-correlated nature of these denoised wavelet coefficients, it is possible to obtain more accurate source estimates using ICA in the wavelet domain. The contributions of this work can be realized as two modules: First, in the analysis module we combine a new 3-D wavelet denoising approach with signal separation properties of ICA in the wavelet domain. This step helps obtain an activation component that corresponds closely to the true underlying signal, which is maximally independent with respect to other components. Second, we propose and describe two novel shape metrics for post-ICA comparisons between activation regions obtained through different frameworks. We verified our method using simulated as well as real fMRI data and compared our results against the conventional scheme (Gaussian smoothing+spatial ICA: s-ICA). The results show significant improvements based on two important features: (1) preservation of shape of the activation region (shape metrics) and (2) receiver operating characteristic curves. It was observed that the proposed framework was able to preserve the actual activation shape in a consistent manner even for very high noise levels in addition to significant reduction in false
Wavelet-Based Image Enhancement in X-Ray Imaging and Tomography
NASA Astrophysics Data System (ADS)
Bronnikov, Andrei V.; Duifhuis, Gerrit
1998-07-01
We consider an application of the wavelet transform to image processing in x-ray imaging and three-dimensional (3-D) tomography aimed at industrial inspection. Our experimental setup works in two operational modes digital radiography and 3-D cone-beam tomographic data acquisition. Although the x-ray images measured have a large dynamic range and good spatial resolution, their noise properties and contrast are often not optimal. To enhance the images, we suggest applying digital image processing by using wavelet-based algorithms and consider the wavelet-based multiscale edge representation in the framework of the Mallat and Zhong approach IEEE Trans. Pattern Anal. Mach. Intell. 14, 710 (1992) . A contrast-enhancement method by use of equalization of the multiscale edges is suggested. Several denoising algorithms based on modifying the modulus and the phase of the multiscale gradients and several contrast-enhancement techniques applying linear and nonlinear multiscale edge stretching are described and compared by use of experimental data. We propose the use of a filter bank of wavelet-based reconstruction filters for the filtered-backprojection reconstruction algorithm. Experimental results show a considerable increase in the performance of the whole x-ray imaging system for both radiographic and tomographic modes in the case of the application of the wavelet-based image-processing algorithms.
Probability Distribution Extraction from TEC Estimates based on Kernel Density Estimation
NASA Astrophysics Data System (ADS)
Demir, Uygar; Toker, Cenk; Çenet, Duygu
2016-07-01
Statistical analysis of the ionosphere, specifically the Total Electron Content (TEC), may reveal important information about its temporal and spatial characteristics. One of the core metrics that express the statistical properties of a stochastic process is its Probability Density Function (pdf). Furthermore, statistical parameters such as mean, variance and kurtosis, which can be derived from the pdf, may provide information about the spatial uniformity or clustering of the electron content. For example, the variance differentiates between a quiet ionosphere and a disturbed one, whereas kurtosis differentiates between a geomagnetic storm and an earthquake. Therefore, valuable information about the state of the ionosphere (and the natural phenomena that cause the disturbance) can be obtained by looking at the statistical parameters. In the literature, there are publications which try to fit the histogram of TEC estimates to some well-known pdf.s such as Gaussian, Exponential, etc. However, constraining a histogram to fit to a function with a fixed shape will increase estimation error, and all the information extracted from such pdf will continue to contain this error. In such techniques, it is highly likely to observe some artificial characteristics in the estimated pdf which is not present in the original data. In the present study, we use the Kernel Density Estimation (KDE) technique to estimate the pdf of the TEC. KDE is a non-parametric approach which does not impose a specific form on the TEC. As a result, better pdf estimates that almost perfectly fit to the observed TEC values can be obtained as compared to the techniques mentioned above. KDE is particularly good at representing the tail probabilities, and outliers. We also calculate the mean, variance and kurtosis of the measured TEC values. The technique is applied to the ionosphere over Turkey where the TEC values are estimated from the GNSS measurement from the TNPGN-Active (Turkish National Permanent
A generalized model for estimating the energy density of invertebrates
James, Daniel A.; Csargo, Isak J.; Von Eschen, Aaron; Thul, Megan D.; Baker, James M.; Hayer, Cari-Ann; Howell, Jessica; Krause, Jacob; Letvin, Alex; Chipps, Steven R.
2012-01-01
Invertebrate energy density (ED) values are traditionally measured using bomb calorimetry. However, many researchers rely on a few published literature sources to obtain ED values because of time and sampling constraints on measuring ED with bomb calorimetry. Literature values often do not account for spatial or temporal variability associated with invertebrate ED. Thus, these values can be unreliable for use in models and other ecological applications. We evaluated the generality of the relationship between invertebrate ED and proportion of dry-to-wet mass (pDM). We then developed and tested a regression model to predict ED from pDM based on a taxonomically, spatially, and temporally diverse sample of invertebrates representing 28 orders in aquatic (freshwater, estuarine, and marine) and terrestrial (temperate and arid) habitats from 4 continents and 2 oceans. Samples included invertebrates collected in all seasons over the last 19 y. Evaluation of these data revealed a significant relationship between ED and pDM (r2 = 0.96, p < 0.0001), where ED (as J/g wet mass) was estimated from pDM as ED = 22,960pDM − 174.2. Model evaluation showed that nearly all (98.8%) of the variability between observed and predicted values for invertebrate ED could be attributed to residual error in the model. Regression of observed on predicted values revealed that the 97.5% joint confidence region included the intercept of 0 (−103.0 ± 707.9) and slope of 1 (1.01 ± 0.12). Use of this model requires that only dry and wet mass measurements be obtained, resulting in significant time, sample size, and cost savings compared to traditional bomb calorimetry approaches. This model should prove useful for a wide range of ecological studies because it is unaffected by taxonomic, seasonal, or spatial variability.
Online Direct Density-Ratio Estimation Applied to Inlier-Based Outlier Detection.
du Plessis, Marthinus Christoffel; Shiino, Hiroaki; Sugiyama, Masashi
2015-09-01
Many machine learning problems, such as nonstationarity adaptation, outlier detection, dimensionality reduction, and conditional density estimation, can be effectively solved by using the ratio of probability densities. Since the naive two-step procedure of first estimating the probability densities and then taking their ratio performs poorly, methods to directly estimate the density ratio from two sets of samples without density estimation have been extensively studied recently. However, these methods are batch algorithms that use the whole data set to estimate the density ratio, and they are inefficient in the online setup, where training samples are provided sequentially and solutions are updated incrementally without storing previous samples. In this letter, we propose two online density-ratio estimators based on the adaptive regularization of weight vectors. Through experiments on inlier-based outlier detection, we demonstrate the usefulness of the proposed methods.
Estimation of density of mongooses with capture-recapture and distance sampling
Corn, J.L.; Conroy, M.J.
1998-01-01
We captured mongooses (Herpestes javanicus) in live traps arranged in trapping webs in Antigua, West Indies, and used capture-recapture and distance sampling to estimate density. Distance estimation and program DISTANCE were used to provide estimates of density from the trapping-web data. Mean density based on trapping webs was 9.5 mongooses/ha (range, 5.9-10.2/ha); estimates had coefficients of variation ranging from 29.82-31.58% (X?? = 30.46%). Mark-recapture models were used to estimate abundance, which was converted to density using estimates of effective trap area. Tests of model assumptions provided by CAPTURE indicated pronounced heterogeneity in capture probabilities and some indication of behavioral response and variation over time. Mean estimated density was 1.80 mongooses/ha (range, 1.37-2.15/ha) with estimated coefficients of variation of 4.68-11.92% (X?? = 7.46%). Estimates of density based on mark-recapture data depended heavily on assumptions about animal home ranges; variances of densities also may be underestimated, leading to unrealistically narrow confidence intervals. Estimates based on trap webs require fewer assumptions, and estimated variances may be a more realistic representation of sampling variation. Because trap webs are established easily and provide adequate data for estimation in a few sample occasions, the method should be efficient and reliable for estimating densities of mongooses.
Nonparametric estimation of population density for line transect sampling using FOURIER series
Crain, B.R.; Burnham, K.P.; Anderson, D.R.; Lake, J.L.
1979-01-01
A nonparametric, robust density estimation method is explored for the analysis of right-angle distances from a transect line to the objects sighted. The method is based on the FOURIER series expansion of a probability density function over an interval. With only mild assumptions, a general population density estimator of wide applicability is obtained.
Brown, S.
1996-07-01
This chapter discusses estimating the biomass density of forest vegetation. Data from inventories of tropical Asia and America were used to estimate biomass densities. Efforts to quantify forest disturbance suggest that population density, at subnational scales, can be used as a surrogate index to encompass all the anthropogenic activities (logging, slash-and-burn agriculture, grazing) that lead to degradation of tropical forest biomass density.
Wavelet-based surrogate time series for multiscale simulation of heterogeneous catalysis
Savara, Aditya Ashi; Daw, C. Stuart; Xiong, Qingang; ...
2016-01-28
We propose a wavelet-based scheme that encodes the essential dynamics of discrete microscale surface reactions in a form that can be coupled with continuum macroscale flow simulations with high computational efficiency. This makes it possible to simulate the dynamic behavior of reactor-scale heterogeneous catalysis without requiring detailed concurrent simulations at both the surface and continuum scales using different models. Our scheme is based on the application of wavelet-based surrogate time series that encodes the essential temporal and/or spatial fine-scale dynamics at the catalyst surface. The encoded dynamics are then used to generate statistically equivalent, randomized surrogate time series, which canmore » be linked to the continuum scale simulation. As a result, we illustrate an application of this approach using two different kinetic Monte Carlo simulations with different characteristic behaviors typical for heterogeneous chemical reactions.« less
Wavelet-based surrogate time series for multiscale simulation of heterogeneous catalysis
Savara, Aditya Ashi; Daw, C. Stuart; Xiong, Qingang; Gur, Sourav; Danielson, Thomas L.; Hin, Celine N.; Pannala, Sreekanth; Frantziskonis, George N.
2016-01-28
We propose a wavelet-based scheme that encodes the essential dynamics of discrete microscale surface reactions in a form that can be coupled with continuum macroscale flow simulations with high computational efficiency. This makes it possible to simulate the dynamic behavior of reactor-scale heterogeneous catalysis without requiring detailed concurrent simulations at both the surface and continuum scales using different models. Our scheme is based on the application of wavelet-based surrogate time series that encodes the essential temporal and/or spatial fine-scale dynamics at the catalyst surface. The encoded dynamics are then used to generate statistically equivalent, randomized surrogate time series, which can be linked to the continuum scale simulation. As a result, we illustrate an application of this approach using two different kinetic Monte Carlo simulations with different characteristic behaviors typical for heterogeneous chemical reactions.
Chang, Ching-Wei; Mycek, Mary-Ann
2012-05-01
We report the first application of wavelet-based denoising (noise removal) methods to time-domain box-car fluorescence lifetime imaging microscopy (FLIM) images and compare the results to novel total variation (TV) denoising methods. Methods were tested first on artificial images and then applied to low-light live-cell images. Relative to undenoised images, TV methods could improve lifetime precision up to 10-fold in artificial images, while preserving the overall accuracy of lifetime and amplitude values of a single-exponential decay model and improving local lifetime fitting in live-cell images. Wavelet-based methods were at least 4-fold faster than TV methods, but could introduce significant inaccuracies in recovered lifetime values. The denoising methods discussed can potentially enhance a variety of FLIM applications, including live-cell, in vivo animal, or endoscopic imaging studies, especially under challenging imaging conditions such as low-light or fast video-rate imaging.
2012-01-01
Background High-density oligonucleotide microarray is an appropriate technology for genomic analysis, and is particulary useful in the generation of transcriptional maps, ChIP-on-chip studies and re-sequencing of the genome.Transcriptome analysis of tiling microarray data facilitates the discovery of novel transcripts and the assessment of differential expression in diverse experimental conditions. Although new technologies such as next-generation sequencing have appeared, microarrays might still be useful for the study of small genomes or for the analysis of genomic regions with custom microarrays due to their lower price and good accuracy in expression quantification. Results Here, we propose a novel wavelet-based method, named ZCL (zero-crossing lines), for the combined denoising and segmentation of tiling signals. The denoising is performed with the classical SUREshrink method and the detection of transcriptionally active regions is based on the computation of the Continuous Wavelet Transform (CWT). In particular, the detection of the transitions is implemented as the thresholding of the zero-crossing lines. The algorithm described has been applied to the public Saccharomyces cerevisiae dataset and it has been compared with two well-known algorithms: pseudo-median sliding window (PMSW) and the structural change model (SCM). As a proof-of-principle, we applied the ZCL algorithm to the analysis of the custom tiling microarray hybridization results of a S. aureus mutant deficient in the sigma B transcription factor. The challenge was to identify those transcripts whose expression decreases in the absence of sigma B. Conclusions The proposed method archives the best performance in terms of positive predictive value (PPV) while its sensitivity is similar to the other algorithms used for the comparison. The computation time needed to process the transcriptional signals is low as compared with model-based methods and in the same range to those based on the use of
Wavelet-based Poisson solver for use in particle-in-cell simulations.
Terzić, Balsa; Pogorelov, Ilya V
2005-06-01
We report on a successful implementation of a wavelet-based Poisson solver for use in three-dimensional particle-in-cell simulations. Our method harnesses advantages afforded by the wavelet formulation, such as sparsity of operators and data sets, existence of effective preconditioners, and the ability simultaneously to remove numerical noise and additional compression of relevant data sets. We present and discuss preliminary results relating to the application of the new solver to test problems in accelerator physics and astrophysics.
NASA Astrophysics Data System (ADS)
Ren, Rong; Wang, Jin; Jiang, Xiyan; Lu, Yunqing; Xu, Ji
2014-10-01
The finite-difference time-domain (FDTD) method, which solves time-dependent Maxwell's curl equations numerically, has been proved to be a highly efficient technique for numerous applications in electromagnetic. Despite the simplicity of the FDTD method, this technique suffers from serious limitations in case that substantial computer resource is required to solve electromagnetic problems with medium or large computational dimensions, for example in high-index optical devices. In our work, an efficient wavelet-based FDTD model has been implemented and extended in a parallel computation environment, to analyze high-index optical devices. This model is based on Daubechies compactly supported orthogonal wavelets and Deslauriers-Dubuc interpolating functions as biorthogonal wavelet bases, and thus is a very efficient algorithm to solve differential equations numerically. This wavelet-based FDTD model is a high-spatial-order FDTD indeed. Because of the highly linear numerical dispersion properties of this high-spatial-order FDTD, the required discretization can be coarser than that required in the standard FDTD method. In our work, this wavelet-based FDTD model achieved significant reduction in the number of cells, i.e. used memory. Also, as different segments of the optical device can be computed simultaneously, there was a significant gain in computation time. Substantially, we achieved speed-up factors higher than 30 in comparisons to using a single processor. Furthermore, the efficiency of the parallelized computation such as the influence of the discretization and the load sharing between different processors were analyzed. As a conclusion, this parallel-computing model is promising to analyze more complicated optical devices with large dimensions.
NASA Astrophysics Data System (ADS)
Pavlov, Alexey N.; Sindeeva, Olga A.; Sindeev, Sergey S.; Pavlova, Olga N.; Rybalova, Elena V.; Semyachkina-Glushkovskaya, Oxana V.
2016-03-01
In this paper we address the problem of revealing and recognition transitions between distinct physiological states using quite short fragments of experimental recordings. With the wavelet-based multifractal analysis we characterize changes of complexity and correlation properties in the stress-induced dynamics of arterial blood pressure in rats. We propose an approach for association revealed changes with distinct physiological regulatory mechanisms and for quantifying the influence of each mechanism.
NASA Astrophysics Data System (ADS)
Benke, George; Bozek-Kuzmicki, Maribeth; Colella, David; Jacyna, Garry M.; Benedetto, John J.
1995-04-01
A wavelet-based technique WISP is used to discriminate normal brain activity from brain activity during epileptic seizures. The WISP technique is used to exploit the noted difference in frequency content during the normal brain state and the seizure brain state so that detection and localization decisions can be made. An AR-Pole statistic technique is used as a comparative measure to base-line the WISP performance.
On a Wavelet-Based Method for the Numerical Simulation of Wave Propagation
NASA Astrophysics Data System (ADS)
Hong, Tae-Kyung; Kennett, B. L. N.
2002-12-01
A wavelet-based method for the numerical simulation of acoustic and elastic wave propagation is developed. Using a displacement-velocity formulation and treating spatial derivatives with linear operators, the wave equations are rewritten as a system of equations whose evolution in time is controlled by first-order derivatives. The linear operators for spatial derivatives are implemented in wavelet bases using an operator projection technique with nonstandard forms of wavelet transform. Using a semigroup approach, the discretized solution in time can be represented in an explicit recursive form, based on Taylor expansion of exponential functions of operator matrices. The boundary conditions are implemented by augmenting the system of equations with equivalent force terms at the boundaries. The wavelet-based method is applied to the acoustic wave equation with rigid boundary conditions at both ends in 1-D domain and to the elastic wave equation with a traction-free boundary conditions at a free surface in 2-D spatial media. The method can be applied directly to media with plane surfaces, and surface topography can be included with the aid of distortion of the grid describing the properties of the medium. The numerical results are compared with analytic solutions based on the Cagniard technique and show high accuracy. The wavelet-based approach is also demonstrated for complex media including highly varying topography or stochastic heterogeneity with rapid variations in physical parameters. These examples indicate the value of the approach as an accurate and stable tool for the simulation of wave propagation in general complex media.
The analysis of VF and VT with wavelet-based Tsallis information measure [rapid communication
NASA Astrophysics Data System (ADS)
Huang, Hai; Xie, Hongbo; Wang, Zhizhong
2005-03-01
We undertake the study of ventricular fibrillation and ventricular tachycardia by recourse to wavelet-based multiresolution analysis. Comparing with conventional Shannon entropy analysis of signal, we proposed a new application of Tsallis entropy analysis. It is shown that, as a criteria for detecting between ventricular fibrillation and ventricular tachycardia, Tsallis' multiresolution entropy (MRET) provides one with better discrimination power than the Shannon's multiresolution entropy (MRE).
Chen, Rongda; Wang, Ze
2013-01-01
Recovery rate is essential to the estimation of the portfolio’s loss and economic capital. Neglecting the randomness of the distribution of recovery rate may underestimate the risk. The study introduces two kinds of models of distribution, Beta distribution estimation and kernel density distribution estimation, to simulate the distribution of recovery rates of corporate loans and bonds. As is known, models based on Beta distribution are common in daily usage, such as CreditMetrics by J.P. Morgan, Portfolio Manager by KMV and Losscalc by Moody’s. However, it has a fatal defect that it can’t fit the bimodal or multimodal distributions such as recovery rates of corporate loans and bonds as Moody’s new data show. In order to overcome this flaw, the kernel density estimation is introduced and we compare the simulation results by histogram, Beta distribution estimation and kernel density estimation to reach the conclusion that the Gaussian kernel density distribution really better imitates the distribution of the bimodal or multimodal data samples of corporate loans and bonds. Finally, a Chi-square test of the Gaussian kernel density estimation proves that it can fit the curve of recovery rates of loans and bonds. So using the kernel density distribution to precisely delineate the bimodal recovery rates of bonds is optimal in credit risk management. PMID:23874558
Chen, Rongda; Wang, Ze
2013-01-01
Recovery rate is essential to the estimation of the portfolio's loss and economic capital. Neglecting the randomness of the distribution of recovery rate may underestimate the risk. The study introduces two kinds of models of distribution, Beta distribution estimation and kernel density distribution estimation, to simulate the distribution of recovery rates of corporate loans and bonds. As is known, models based on Beta distribution are common in daily usage, such as CreditMetrics by J.P. Morgan, Portfolio Manager by KMV and Losscalc by Moody's. However, it has a fatal defect that it can't fit the bimodal or multimodal distributions such as recovery rates of corporate loans and bonds as Moody's new data show. In order to overcome this flaw, the kernel density estimation is introduced and we compare the simulation results by histogram, Beta distribution estimation and kernel density estimation to reach the conclusion that the Gaussian kernel density distribution really better imitates the distribution of the bimodal or multimodal data samples of corporate loans and bonds. Finally, a Chi-square test of the Gaussian kernel density estimation proves that it can fit the curve of recovery rates of loans and bonds. So using the kernel density distribution to precisely delineate the bimodal recovery rates of bonds is optimal in credit risk management.
Large Scale Density Estimation of Blue and Fin Whales (LSD)
2015-09-30
Specific objectives are as follows. 1. Develop and implement methods for estimating detection probability of vocalizations based on bearing and...configuration of hydrophone triads suspended in the deep sound channel allows for call bearing and, in some cases where the vocalizing animal is close...requiring randomly placed multiple instruments. It is anticipated that bearings and received levels of a large number of calls can be estimated
Density Estimation and Anomaly Detection in Large Social Networks
2014-07-15
Observatory generates 1.5 terabytes of data daily [36], and the upcoming Square Kilometer Array (SKA, [19]) is projected to generate an exabyte of...2.4.1 DMD experiment: dynamic textures with missing data As mentioned in the introduction, sensors such as the Solar Data Observatory are generating...Rights Movement and upheaval among southern Democrats. (Best viewed in color.) By looking at the network estimates of the DFS estimator across time (as
EXACT MINIMAX ESTIMATION OF THE PREDICTIVE DENSITY IN SPARSE GAUSSIAN MODELS1
Mukherjee, Gourab; Johnstone, Iain M.
2015-01-01
We consider estimating the predictive density under Kullback–Leibler loss in an ℓ0 sparse Gaussian sequence model. Explicit expressions of the first order minimax risk along with its exact constant, asymptotically least favorable priors and optimal predictive density estimates are derived. Compared to the sparse recovery results involving point estimation of the normal mean, new decision theoretic phenomena are seen. Suboptimal performance of the class of plug-in density estimates reflects the predictive nature of the problem and optimal strategies need diversification of the future risk. We find that minimax optimal strategies lie outside the Gaussian family but can be constructed with threshold predictive density estimates. Novel minimax techniques involving simultaneous calibration of the sparsity adjustment and the risk diversification mechanisms are used to design optimal predictive density estimates. PMID:26448678
Effects of LiDAR point density and landscape context on estimates of urban forest biomass
NASA Astrophysics Data System (ADS)
Singh, Kunwar K.; Chen, Gang; McCarter, James B.; Meentemeyer, Ross K.
2015-03-01
Light Detection and Ranging (LiDAR) data is being increasingly used as an effective alternative to conventional optical remote sensing to accurately estimate aboveground forest biomass ranging from individual tree to stand levels. Recent advancements in LiDAR technology have resulted in higher point densities and improved data accuracies accompanied by challenges for procuring and processing voluminous LiDAR data for large-area assessments. Reducing point density lowers data acquisition costs and overcomes computational challenges for large-area forest assessments. However, how does lower point density impact the accuracy of biomass estimation in forests containing a great level of anthropogenic disturbance? We evaluate the effects of LiDAR point density on the biomass estimation of remnant forests in the rapidly urbanizing region of Charlotte, North Carolina, USA. We used multiple linear regression to establish a statistical relationship between field-measured biomass and predictor variables derived from LiDAR data with varying densities. We compared the estimation accuracies between a general Urban Forest type and three Forest Type models (evergreen, deciduous, and mixed) and quantified the degree to which landscape context influenced biomass estimation. The explained biomass variance of the Urban Forest model, using adjusted R2, was consistent across the reduced point densities, with the highest difference of 11.5% between the 100% and 1% point densities. The combined estimates of Forest Type biomass models outperformed the Urban Forest models at the representative point densities (100% and 40%). The Urban Forest biomass model with development density of 125 m radius produced the highest adjusted R2 (0.83 and 0.82 at 100% and 40% LiDAR point densities, respectively) and the lowest RMSE values, highlighting a distance impact of development on biomass estimation. Our evaluation suggests that reducing LiDAR point density is a viable solution to regional
Sepehrband, Farshid; Clark, Kristi A.; Ullmann, Jeremy F.P.; Kurniawan, Nyoman D.; Leanage, Gayeshika; Reutens, David C.; Yang, Zhengyi
2015-01-01
We examined whether quantitative density measures of cerebral tissue consistent with histology can be obtained from diffusion magnetic resonance imaging (MRI). By incorporating prior knowledge of myelin and cell membrane densities, absolute tissue density values were estimated from relative intra-cellular and intra-neurite density values obtained from diffusion MRI. The NODDI (neurite orientation distribution and density imaging) technique, which can be applied clinically, was used. Myelin density estimates were compared with the results of electron and light microscopy in ex vivo mouse brain and with published density estimates in a healthy human brain. In ex vivo mouse brain, estimated myelin densities in different sub-regions of the mouse corpus callosum were almost identical to values obtained from electron microscopy (Diffusion MRI: 42±6%, 36±4% and 43±5%; electron microscopy: 41±10%, 36±8% and 44±12% in genu, body and splenium, respectively). In the human brain, good agreement was observed between estimated fiber density measurements and previously reported values based on electron microscopy. Estimated density values were unaffected by crossing fibers. PMID:26096639
Confidence estimates in simulation of phase noise or spectral density.
Ashby, Neil
2017-02-13
In this paper we apply the method of discrete simulation of power law noise, developed in [1],[3],[4], to the problem of simulating phase noise for a combination of power law noises. We derive analytic expressions for the probability of observing a value of phase noise L(f) or of any of the onesided spectral densities S(f); Sy(f), or Sx(f), for arbitrary superpositions of power law noise.
A Non-Parametric Probability Density Estimator and Some Applications.
1984-05-01
but she always made them easier. My children, Alison and Adam, did not always make °’ things easier but did keep my efforts in perspective. I love...Since one goal of this research is to develop a " handi - off" estimator, these choices will either be made a priori 24
Posterior Density Estimation for a Class of On-line Quality Control Models
NASA Astrophysics Data System (ADS)
Dorea, Chang C. Y.; Santos, Walter B.
2011-11-01
On-line quality control during production calls for a periodical monitoring of the produced items according to some prescribed strategy. It is reasonable to assume the existence of internal non-observable variables so that the carried out monitoring is only partially reliable. Under the setting of a Hidden Markov Model (HMM), posterior density estimates are obtained via particle filter type algorithms. Making use of kernel density methods the stable regime densities are approximated and false-alarm probabilities are estimated.
Dose-volume histogram prediction using density estimation.
Skarpman Munter, Johanna; Sjölund, Jens
2015-09-07
Knowledge of what dose-volume histograms can be expected for a previously unseen patient could increase consistency and quality in radiotherapy treatment planning. We propose a machine learning method that uses previous treatment plans to predict such dose-volume histograms. The key to the approach is the framing of dose-volume histograms in a probabilistic setting.The training consists of estimating, from the patients in the training set, the joint probability distribution of some predictive features and the dose. The joint distribution immediately provides an estimate of the conditional probability of the dose given the values of the predictive features. The prediction consists of estimating, from the new patient, the distribution of the predictive features and marginalizing the conditional probability from the training over this. Integrating the resulting probability distribution for the dose yields an estimate of the dose-volume histogram.To illustrate how the proposed method relates to previously proposed methods, we use the signed distance to the target boundary as a single predictive feature. As a proof-of-concept, we predicted dose-volume histograms for the brainstems of 22 acoustic schwannoma patients treated with stereotactic radiosurgery, and for the lungs of 9 lung cancer patients treated with stereotactic body radiation therapy. Comparing with two previous attempts at dose-volume histogram prediction we find that, given the same input data, the predictions are similar.In summary, we propose a method for dose-volume histogram prediction that exploits the intrinsic probabilistic properties of dose-volume histograms. We argue that the proposed method makes up for some deficiencies in previously proposed methods, thereby potentially increasing ease of use, flexibility and ability to perform well with small amounts of training data.
Estimated global nitrogen deposition using NO2 column density
Lu, Xuehe; Jiang, Hong; Zhang, Xiuying; Liu, Jinxun; Zhang, Zhen; Jin, Jiaxin; Wang, Ying; Xu, Jianhui; Cheng, Miaomiao
2013-01-01
Global nitrogen deposition has increased over the past 100 years. Monitoring and simulation studies of nitrogen deposition have evaluated nitrogen deposition at both the global and regional scale. With the development of remote-sensing instruments, tropospheric NO2 column density retrieved from Global Ozone Monitoring Experiment (GOME) and Scanning Imaging Absorption Spectrometer for Atmospheric Chartography (SCIAMACHY) sensors now provides us with a new opportunity to understand changes in reactive nitrogen in the atmosphere. The concentration of NO2 in the atmosphere has a significant effect on atmospheric nitrogen deposition. According to the general nitrogen deposition calculation method, we use the principal component regression method to evaluate global nitrogen deposition based on global NO2 column density and meteorological data. From the accuracy of the simulation, about 70% of the land area of the Earth passed a significance test of regression. In addition, NO2 column density has a significant influence on regression results over 44% of global land. The simulated results show that global average nitrogen deposition was 0.34 g m−2 yr−1 from 1996 to 2009 and is increasing at about 1% per year. Our simulated results show that China, Europe, and the USA are the three hotspots of nitrogen deposition according to previous research findings. In this study, Southern Asia was found to be another hotspot of nitrogen deposition (about 1.58 g m−2 yr−1 and maintaining a high growth rate). As nitrogen deposition increases, the number of regions threatened by high nitrogen deposits is also increasing. With N emissions continuing to increase in the future, areas whose ecosystem is affected by high level nitrogen deposition will increase.
Application of Density Estimation Methods to Datasets Collected From a Glider
2015-09-30
provide bearings to vocalizing animals. Density estimation from glider datasets will be developed from recordings made during sea trials in Italy...estimation modalities (Thomas and Marques, 2012), such as individual or group counting. In this sense, bearings to received sounds on both hydrophones will...also provide data with which to compare different density estimation methodologies. The possibility of constructing whale tracks from bearings can
An adaptive technique for estimating the atmospheric density profile during the AE mission
NASA Technical Reports Server (NTRS)
Argentiero, P.
1973-01-01
A technique is presented for processing accelerometer data obtained during the AE missions in order to estimate the atmospheric density profile. A minimum variance, adaptive filter is utilized. The trajectory of the probe and probe parameters are in a consider mode where their estimates are unimproved but their associated uncertainties are permitted an impact on filter behavior. Simulations indicate that the technique is effective in estimating a density profile to within a few percentage points.
Joshi, Amitabh; Vidya, T. N. C.
2017-01-01
Mark-recapture estimators are commonly used for population size estimation, and typically yield unbiased estimates for most solitary species with low to moderate home range sizes. However, these methods assume independence of captures among individuals, an assumption that is clearly violated in social species that show fission-fusion dynamics, such as the Asian elephant. In the specific case of Asian elephants, doubts have been raised about the accuracy of population size estimates. More importantly, the potential problem for the use of mark-recapture methods posed by social organization in general has not been systematically addressed. We developed an individual-based simulation framework to systematically examine the potential effects of type of social organization, as well as other factors such as trap density and arrangement, spatial scale of sampling, and population density, on bias in population sizes estimated by POPAN, Robust Design, and Robust Design with detection heterogeneity. In the present study, we ran simulations with biological, demographic and ecological parameters relevant to Asian elephant populations, but the simulation framework is easily extended to address questions relevant to other social species. We collected capture history data from the simulations, and used those data to test for bias in population size estimation. Social organization significantly affected bias in most analyses, but the effect sizes were variable, depending on other factors. Social organization tended to introduce large bias when trap arrangement was uniform and sampling effort was low. POPAN clearly outperformed the two Robust Design models we tested, yielding close to zero bias if traps were arranged at random in the study area, and when population density and trap density were not too low. Social organization did not have a major effect on bias for these parameter combinations at which POPAN gave more or less unbiased population size estimates. Therefore, the
Quantiles, Parametric-Select Density Estimations, and Bi-Information Parameter Estimators.
1982-06-01
A non- parametric estimation method forms estimators which are not based on parametric models. Important examples of non-parametric estimators of a...raw descriptive functions F, f, Q, q, fQ. One distinguishes between parametric and non-parametric methods of estimating smooth functions. A parametric ... estimation method : (1) assumes a family F8, fo’ Q0, qo’ foQ8 of functions, called parametric models, which are indexed by a parameter 6 = ( l
Probabilistic Analysis and Density Parameter Estimation Within Nessus
NASA Technical Reports Server (NTRS)
Godines, Cody R.; Manteufel, Randall D.; Chamis, Christos C. (Technical Monitor)
2002-01-01
This NASA educational grant has the goal of promoting probabilistic analysis methods to undergraduate and graduate UTSA engineering students. Two undergraduate-level and one graduate-level course were offered at UTSA providing a large number of students exposure to and experience in probabilistic techniques. The grant provided two research engineers from Southwest Research Institute the opportunity to teach these courses at UTSA, thereby exposing a large number of students to practical applications of probabilistic methods and state-of-the-art computational methods. In classroom activities, students were introduced to the NESSUS computer program, which embodies many algorithms in probabilistic simulation and reliability analysis. Because the NESSUS program is used at UTSA in both student research projects and selected courses, a student version of a NESSUS manual has been revised and improved, with additional example problems being added to expand the scope of the example application problems. This report documents two research accomplishments in the integration of a new sampling algorithm into NESSUS and in the testing of the new algorithm. The new Latin Hypercube Sampling (LHS) subroutines use the latest NESSUS input file format and specific files for writing output. The LHS subroutines are called out early in the program so that no unnecessary calculations are performed. Proper correlation between sets of multidimensional coordinates can be obtained by using NESSUS' LHS capabilities. Finally, two types of correlation are written to the appropriate output file. The program enhancement was tested by repeatedly estimating the mean, standard deviation, and 99th percentile of four different responses using Monte Carlo (MC) and LHS. These test cases, put forth by the Society of Automotive Engineers, are used to compare probabilistic methods. For all test cases, it is shown that LHS has a lower estimation error than MC when used to estimate the mean, standard deviation
Wavelet-based study of valence-arousal model of emotions on EEG signals with LabVIEW.
Guzel Aydin, Seda; Kaya, Turgay; Guler, Hasan
2016-06-01
This paper illustrates the wavelet-based feature extraction for emotion assessment using electroencephalogram (EEG) signal through graphical coding design. Two-dimensional (valence-arousal) emotion model was studied. Different emotions (happy, joy, melancholy, and disgust) were studied for assessment. These emotions were stimulated by video clips. EEG signals obtained from four subjects were decomposed into five frequency bands (gamma, beta, alpha, theta, and delta) using "db5" wavelet function. Relative features were calculated to obtain further information. Impact of the emotions according to valence value was observed to be optimal on power spectral density of gamma band. The main objective of this work is not only to investigate the influence of the emotions on different frequency bands but also to overcome the difficulties in the text-based program. This work offers an alternative approach for emotion evaluation through EEG processing. There are a number of methods for emotion recognition such as wavelet transform-based, Fourier transform-based, and Hilbert-Huang transform-based methods. However, the majority of these methods have been applied with the text-based programming languages. In this study, we proposed and implemented an experimental feature extraction with graphics-based language, which provides great convenience in bioelectrical signal processing.
NASA Astrophysics Data System (ADS)
Walia, Suresh Kumar; Patel, Raj Kumar; Vinayak, Hemant Kumar; Parti, Raman
2013-12-01
The objective of this study is to bring out the errors introduced during construction which are overlooked during the physical verification of the bridge. Such errors can be pointed out if the symmetry of the structure is challenged. This paper thus presents the study of downstream and upstream truss of newly constructed steel bridge using time-frequency and wavelet-based approach. The variation in the behavior of truss joints of bridge with variation in the vehicle speed has been worked out to determine their flexibility. The testing on the steel bridge was carried out with the same instrument setup on both the upstream and downstream trusses of the bridge at two different speeds with the same moving vehicle. The nodal flexibility investigation is carried out using power spectral density, short-time Fourier transform, and wavelet packet transform with respect to both the trusses and speed. The results obtained have shown that the joints of both upstream and downstream trusses of the bridge behave in a different manner even if designed for the same loading due to constructional variations and vehicle movement, in spite of the fact that the analytical models present a simplistic model for analysis and design. The difficulty of modal parameter extraction of the particular bridge under study increased with the increase in speed due to decreased excitation time.
RADIATION PRESSURE DETECTION AND DENSITY ESTIMATE FOR 2011 MD
Micheli, Marco; Tholen, David J.; Elliott, Garrett T. E-mail: tholen@ifa.hawaii.edu
2014-06-10
We present our astrometric observations of the small near-Earth object 2011 MD (H ∼ 28.0), obtained after its very close fly-by to Earth in 2011 June. Our set of observations extends the observational arc to 73 days, and, together with the published astrometry obtained around the Earth fly-by, allows a direct detection of the effect of radiation pressure on the object, with a confidence of 5σ. The detection can be used to put constraints on the density of the object, pointing to either an unexpectedly low value of ρ=(640±330)kg m{sup −3} (68% confidence interval) if we assume a typical probability distribution for the unknown albedo, or to an unusually high reflectivity of its surface. This result may have important implications both in terms of impact hazard from small objects and in light of a possible retrieval of this target.
Janjarasjitt, Suparerk
2017-02-13
In this study, wavelet-based features of single-channel scalp EEGs recorded from subjects with intractable seizure are examined for epileptic seizure classification. The wavelet-based features extracted from scalp EEGs are simply based on detail and approximation coefficients obtained from the discrete wavelet transform. Support vector machine (SVM), one of the most commonly used classifiers, is applied to classify vectors of wavelet-based features of scalp EEGs into either seizure or non-seizure class. In patient-based epileptic seizure classification, a training data set used to train SVM classifiers is composed of wavelet-based features of scalp EEGs corresponding to the first epileptic seizure event. Overall, the excellent performance on patient-dependent epileptic seizure classification is obtained with the average accuracy, sensitivity, and specificity of, respectively, 0.9687, 0.7299, and 0.9813. The vector composed of two wavelet-based features of scalp EEGs provide the best performance on patient-dependent epileptic seizure classification in most cases, i.e., 19 cases out of 24. The wavelet-based features corresponding to the 32-64, 8-16, and 4-8 Hz subbands of scalp EEGs are the mostly used features providing the best performance on patient-dependent classification. Furthermore, the performance on both patient-dependent and patient-independent epileptic seizure classifications are also validated using tenfold cross-validation. From the patient-independent epileptic seizure classification validated using tenfold cross-validation, it is shown that the best classification performance is achieved using the wavelet-based features corresponding to the 64-128 and 4-8 Hz subbands of scalp EEGs.
An Efficient Acoustic Density Estimation Method with Human Detectors Applied to Gibbons in Cambodia
Kidney, Darren; Rawson, Benjamin M.; Borchers, David L.; Stevenson, Ben C.; Marques, Tiago A.; Thomas, Len
2016-01-01
Some animal species are hard to see but easy to hear. Standard visual methods for estimating population density for such species are often ineffective or inefficient, but methods based on passive acoustics show more promise. We develop spatially explicit capture-recapture (SECR) methods for territorial vocalising species, in which humans act as an acoustic detector array. We use SECR and estimated bearing data from a single-occasion acoustic survey of a gibbon population in northeastern Cambodia to estimate the density of calling groups. The properties of the estimator are assessed using a simulation study, in which a variety of survey designs are also investigated. We then present a new form of the SECR likelihood for multi-occasion data which accounts for the stochastic availability of animals. In the context of gibbon surveys this allows model-based estimation of the proportion of groups that produce territorial vocalisations on a given day, thereby enabling the density of groups, instead of the density of calling groups, to be estimated. We illustrate the performance of this new estimator by simulation. We show that it is possible to estimate density reliably from human acoustic detections of visually cryptic species using SECR methods. For gibbon surveys we also show that incorporating observers’ estimates of bearings to detected groups substantially improves estimator performance. Using the new form of the SECR likelihood we demonstrate that estimates of availability, in addition to population density and detection function parameters, can be obtained from multi-occasion data, and that the detection function parameters are not confounded with the availability parameter. This acoustic SECR method provides a means of obtaining reliable density estimates for territorial vocalising species. It is also efficient in terms of data requirements since since it only requires routine survey data. We anticipate that the low-tech field requirements will make this method
Impact of Building Heights on 3d Urban Density Estimation from Spaceborne Stereo Imagery
NASA Astrophysics Data System (ADS)
Peng, Feifei; Gong, Jianya; Wang, Le; Wu, Huayi; Yang, Jiansi
2016-06-01
In urban planning and design applications, visualization of built up areas in three dimensions (3D) is critical for understanding building density, but the accurate building heights required for 3D density calculation are not always available. To solve this problem, spaceborne stereo imagery is often used to estimate building heights; however estimated building heights might include errors. These errors vary between local areas within a study area and related to the heights of the building themselves, distorting 3D density estimation. The impact of building height accuracy on 3D density estimation must be determined across and within a study area. In our research, accurate planar information from city authorities is used during 3D density estimation as reference data, to avoid the errors inherent to planar information extracted from remotely sensed imagery. Our experimental results show that underestimation of building heights is correlated to underestimation of the Floor Area Ratio (FAR). In local areas, experimental results show that land use blocks with low FAR values often have small errors due to small building height errors for low buildings in the blocks; and blocks with high FAR values often have large errors due to large building height errors for high buildings in the blocks. Our study reveals that the accuracy of 3D density estimated from spaceborne stereo imagery is correlated to heights of buildings in a scene; therefore building heights must be considered when spaceborne stereo imagery is used to estimate 3D density to improve precision.
A comparison of 2 techniques for estimating deer density
Storm, G.L.; Cottam, D.F.; Yahner, R.H.; Nichols, J.D.
1977-01-01
We applied mark-resight and area-conversion methods to estimate deer abundance at a 2,862-ha area in and surrounding the Gettysburg National Military Park and Eisenhower National Historic Site during 1987-1991. One observer in each of 11 compartments counted marked and unmarked deer during 65-75 minutes at dusk during 3 counts in each of April and November. Use of radio-collars and vinyl collars provided a complete inventory of marked deer in the population prior to the counts. We sighted 54% of the marked deer during April 1987 and 1988, and 43% of the marked deer during November 1987 and 1988. Mean number of deer counted increased from 427 in April 1987 to 582 in April 1991, and increased from 467 in November 1987 to 662 in November 1990. Herd size during April, based on the mark-resight method, increased from approximately 700-1,400 from 1987-1991, whereas the estimates for November indicated an increase from 983 for 1987 to 1,592 for 1990. Given the large proportion of open area and the extensive road system throughout the study area, we concluded that the sighting probability for marked and unmarked deer was fairly similar. We believe that the mark-resight method was better suited to our study than the area-conversion method because deer were not evenly distributed between areas suitable and unsuitable for sighting within open and forested areas. The assumption of equal distribution is required by the area-conversion method. Deer marked for the mark-resight method also helped reduce double counting during the dusk surveys.
On the analysis of wavelet-based approaches for print mottle artifacts
NASA Astrophysics Data System (ADS)
Eid, Ahmed H.; Cooper, Brian E.
2014-01-01
Print mottle is one of several attributes described in ISO/IEC DTS 24790, a draft technical specification for the measurement of image quality for monochrome printed output. It defines mottle as aperiodic fluctuations of lightness less than about 0.4 cycles per millimeter, a definition inherited from the latest official standard on printed image quality, ISO/IEC 13660. In a previous publication, we introduced a modification to the ISO/IEC 13660 mottle measurement algorithm that includes a band-pass, wavelet-based, filtering step to limit the contribution of high-frequency fluctuations including those introduced by print grain artifacts. This modification has improved the algorithm's correlation with the subjective evaluation of experts who rated the severity of printed mottle artifacts. Seeking to improve upon the mottle algorithm in ISO/IEC 13660, the ISO 24790 committee evaluated several mottle metrics. This led to the selection of the above wavelet-based approach as the top candidate algorithm for inclusion in a future ISO/IEC standard. Recent experimental results from the ISO committee showed higher correlation between the wavelet-based approach and the subjective evaluation conducted by the ISO committee members based upon 25 samples covering a variety of printed mottle artifacts. In addition, we introduce an alternative approach for measuring mottle defects based on spatial frequency analysis of wavelet- filtered images. Our goal is to establish a link between the spatial-based mottle (ISO/IEC DTS 24790) approach and its equivalent frequency-based one in light of Parseval's theorem. Our experimental results showed a high correlation between the spatial and frequency based approaches.
Serial identification of EEG patterns using adaptive wavelet-based analysis
NASA Astrophysics Data System (ADS)
Nazimov, A. I.; Pavlov, A. N.; Nazimova, A. A.; Grubov, V. V.; Koronovskii, A. A.; Sitnikova, E.; Hramov, A. E.
2013-10-01
A problem of recognition specific oscillatory patterns in the electroencephalograms with the continuous wavelet-transform is discussed. Aiming to improve abilities of the wavelet-based tools we propose a serial adaptive method for sequential identification of EEG patterns such as sleep spindles and spike-wave discharges. This method provides an optimal selection of parameters based on objective functions and enables to extract the most informative features of the recognized structures. Different ways of increasing the quality of patterns recognition within the proposed serial adaptive technique are considered.
A novel 3D wavelet based filter for visualizing features in noisy biological data
Moss, W C; Haase, S; Lyle, J M; Agard, D A; Sedat, J W
2005-01-05
We have developed a 3D wavelet-based filter for visualizing structural features in volumetric data. The only variable parameter is a characteristic linear size of the feature of interest. The filtered output contains only those regions that are correlated with the characteristic size, thus denoising the image. We demonstrate the use of the filter by applying it to 3D data from a variety of electron microscopy samples including low contrast vitreous ice cryogenic preparations, as well as 3D optical microscopy specimens.
ICER-3D: A Progressive Wavelet-Based Compressor for Hyperspectral Images
NASA Technical Reports Server (NTRS)
Kiely, A.; Klimesh, M.; Xie, H.; Aranki, N.
2005-01-01
ICER-3D is a progressive, wavelet-based compressor for hyperspectral images. ICER-3D is derived from the ICER image compressor. ICER-3D can provide lossless and lossy compression, and incorporates an error-containment scheme to limit the effects of data loss during transmission. The three-dimensional wavelet decomposition structure used by ICER-3D exploits correlations in all three dimensions of hyperspectral data sets, while facilitating elimination of spectral ringing artifacts. Correlation is further exploited by a context modeler that effectively exploits spectral dependencies in the wavelet-transformed hyperspectral data. Performance results illustrating the benefits of these features are presented.
Parameterization of density estimation in full waveform well-to-well tomography
NASA Astrophysics Data System (ADS)
Teranishi, K.; Mikada, H.; Goto, T. N.; Takekawa, J.
2014-12-01
Seismic full-waveform inversion (FWI) is a method for estimating mainly velocity structure in the subsurface. As wave propagation is influenced by elastic parameter Vp, Vs and density, it is necessary to include these parameters in the modeling and in the inversion (Virieux and Operto 2009). On the other hand, multi-parameter full waveform inversion is a challenging problem because parameters are coupled with each other, and the coupling effects prevent from the appropriate estimation of the elastic parameters. Especially, the estimation of density is of a very difficult exercise because plural elastic parameters including density increases the dimension of the solution space so that any minimization could be trapped in local minima. Therefore, density is usually estimated using an empirical formula such as Gardner's relationship (Gardner et al., 1974) or is fixed to a constant value. Almost all elastic FWI studies have neglected the influence of inverting density parameter because of its difficulty. Since the density parameter is directly included in elastic wave equation, it is necessary to see if it is possible to estimate density value exactly or not. Moreover, Gardner's relationship is an empirical equation and could not always show the exact relation between Vp and density, for example in media such as salt dome. Pre-salt exploration conducted in recent decades could accordingly be influences.The objective of this study is to investigate the feasibility of the estimation of density structure when inverting with the other elastic parameters and to see if density is separable from the other parameters. We perform 2D numerical simulations in order to see the most important factor in the inversion of density structure as well as Vp and Vs. We first apply a P-S separation scheme to obtain P and S wavefields to apply our waveform inversion scheme to estimate Vp and density distributions simultaneously. Then we similarly estimate, Vs and density distributions. We
2014-06-29
Andrews have begun a new research effort with Penn State University, "Large Scale Density Estimation of Blue and Fin Whales ", funded by ONR. This...research groups that hold acoustic tag data for blue and fin whales and assist them in estimating cue rates that could be used in appropriate density...ABSTRACT Recordings of fin whales (Balaenoptera physalus) from a sparse array of Ocean Bottom Seismometers (OBSs) have been used to (1) demonstrate the use
2015-09-30
and Density Estimation of Marine Mammals Using Passive Acoustics - 2015 John A. Hildebrand Scripps Institution of Oceanography UCSD La Jolla...classification, localization and density estimation of marine mammals using passive acoustics , and by doing so advance the state of the art in this field...Passive Acoustics was organized and held at the Scripps Institution of Oceanography (SIO) in July 2015. The objective of ONR support for the
2011-09-30
whale (Balaenoptera physalus) from a sparse array of ocean bottom seismometers (OBSs) will be the dataset used to develop and test a variety of density...T. Marques. 2009. Taming the Jez monster : Estimating fin whale spatial density using acoustic propagation modeling. J. Acoust. Soc. Am. 126(4):2229
G. S., Vijay; H. S., Kumar; Pai P., Srinivasa; N. S., Sriram; Rao, Raj B. K. N.
2012-01-01
The wavelet based denoising has proven its ability to denoise the bearing vibration signals by improving the signal-to-noise ratio (SNR) and reducing the root-mean-square error (RMSE). In this paper seven wavelet based denoising schemes have been evaluated based on the performance of the Artificial Neural Network (ANN) and the Support Vector Machine (SVM), for the bearing condition classification. The work consists of two parts, the first part in which a synthetic signal simulating the defective bearing vibration signal with Gaussian noise was subjected to these denoising schemes. The best scheme based on the SNR and the RMSE was identified. In the second part, the vibration signals collected from a customized Rolling Element Bearing (REB) test rig for four bearing conditions were subjected to these denoising schemes. Several time and frequency domain features were extracted from the denoised signals, out of which a few sensitive features were selected using the Fisher's Criterion (FC). Extracted features were used to train and test the ANN and the SVM. The best denoising scheme identified, based on the classification performances of the ANN and the SVM, was found to be the same as the one obtained using the synthetic signal. PMID:23213323
Analysis of damped tissue vibrations in time-frequency space: a wavelet-based approach.
Enders, Hendrik; von Tscharner, Vinzenz; Nigg, Benno M
2012-11-15
There is evidence that vibrations of soft tissue compartments are not appropriately described by a single sinusoidal oscillation for certain types of locomotion such as running or sprinting. This paper discusses a new method to quantify damping of superimposed oscillations using a wavelet-based time-frequency approach. This wavelet-based method was applied to experimental data in order to analyze the decay of the overall power of vibration signals over time. Eight healthy subjects performed sprinting trials on a 30 m runway on a hard surface and a soft surface. Soft tissue vibrations were quantified from the tissue overlaying the muscle belly of the medial gastrocnemius muscle. The new methodology determines damping coefficients with an average error of 2.2% based on a wavelet scaling factor of 0.7. This was sufficient to detect differences in soft tissue compartment damping between the hard and soft surface. On average, the hard surface elicited a 7.02 s(-1) lower damping coefficient than the soft surface (p<0.05). A power spectral analysis of the muscular vibrations occurring during sprinting confirmed that vibrations during dynamic movements cannot be represented by a single sinusoidal function. Compared to the traditional sinusoidal approach, this newly developed method can quantify vibration damping for systems with multiple vibration modes that interfere with one another. This new time-frequency analysis may be more appropriate when an acceleration trace does not follow a sinusoidal function, as is the case with multiple forms of human locomotion.
ERIC Educational Resources Information Center
Woods, Carol M.; Thissen, David
2006-01-01
The purpose of this paper is to introduce a new method for fitting item response theory models with the latent population distribution estimated from the data using splines. A spline-based density estimation system provides a flexible alternative to existing procedures that use a normal distribution, or a different functional form, for the…
Technology Transfer Automated Retrieval System (TEKTRAN)
Technical Summary Objectives: Determine the effect of body mass index (BMI) on the accuracy of body density (Db) estimated with skinfold thickness (SFT) measurements compared to air displacement plethysmography (ADP) in adults. Subjects/Methods: We estimated Db with SFT and ADP in 131 healthy men an...
Item Response Theory with Estimation of the Latent Density Using Davidian Curves
ERIC Educational Resources Information Center
Woods, Carol M.; Lin, Nan
2009-01-01
Davidian-curve item response theory (DC-IRT) is introduced, evaluated with simulations, and illustrated using data from the Schedule for Nonadaptive and Adaptive Personality Entitlement scale. DC-IRT is a method for fitting unidimensional IRT models with maximum marginal likelihood estimation, in which the latent density is estimated,…
Nonparametric maximum likelihood estimation of probability densities by penalty function methods
NASA Technical Reports Server (NTRS)
Demontricher, G. F.; Tapia, R. A.; Thompson, J. R.
1974-01-01
When it is known a priori exactly to which finite dimensional manifold the probability density function gives rise to a set of samples, the parametric maximum likelihood estimation procedure leads to poor estimates and is unstable; while the nonparametric maximum likelihood procedure is undefined. A very general theory of maximum penalized likelihood estimation which should avoid many of these difficulties is presented. It is demonstrated that each reproducing kernel Hilbert space leads, in a very natural way, to a maximum penalized likelihood estimator and that a well-known class of reproducing kernel Hilbert spaces gives polynomial splines as the nonparametric maximum penalized likelihood estimates.
NASA Astrophysics Data System (ADS)
Rojas-Lima, J. E.; Domínguez-Pacheco, A.; Hernández-Aguilar, C.; Cruz-Orea, A.
2016-09-01
Considering the necessity of photothermal alternative approaches for characterizing nonhomogeneous materials like maize seeds, the objective of this research work was to analyze statistically the amplitude variations of photopyroelectric signals, by means of nonparametric techniques such as the histogram and the kernel density estimator, and the probability density function of the amplitude variations of two genotypes of maize seeds with different pigmentations and structural components: crystalline and floury. To determine if the probability density function had a known parametric form, the histogram was determined which did not present a known parametric form, so the kernel density estimator using the Gaussian kernel, with an efficiency of 95 % in density estimation, was used to obtain the probability density function. The results obtained indicated that maize seeds could be differentiated in terms of the statistical values for floury and crystalline seeds such as the mean (93.11, 159.21), variance (1.64× 103, 1.48× 103), and standard deviation (40.54, 38.47) obtained from the amplitude variations of photopyroelectric signals in the case of the histogram approach. For the case of the kernel density estimator, seeds can be differentiated in terms of kernel bandwidth or smoothing constant h of 9.85 and 6.09 for floury and crystalline seeds, respectively.
Kocovsky, Patrick M.; Rudstam, Lars G.; Yule, Daniel L.; Warner, David M.; Schaner, Ted; Pientka, Bernie; Deller, John W.; Waterfield, Holly A.; Witzel, Larry D.; Sullivan, Patrick J.
2013-01-01
Standardized methods of data collection and analysis ensure quality and facilitate comparisons among systems. We evaluated the importance of three recommendations from the Standard Operating Procedure for hydroacoustics in the Laurentian Great Lakes (GLSOP) on density estimates of target species: noise subtraction; setting volume backscattering strength (Sv) thresholds from user-defined minimum target strength (TS) of interest (TS-based Sv threshold); and calculations of an index for multiple targets (Nv index) to identify and remove biased TS values. Eliminating noise had the predictable effect of decreasing density estimates in most lakes. Using the TS-based Sv threshold decreased fish densities in the middle and lower layers in the deepest lakes with abundant invertebrates (e.g., Mysis diluviana). Correcting for biased in situ TS increased measured density up to 86% in the shallower lakes, which had the highest fish densities. The current recommendations by the GLSOP significantly influence acoustic density estimates, but the degree of importance is lake dependent. Applying GLSOP recommendations, whether in the Laurentian Great Lakes or elsewhere, will improve our ability to compare results among lakes. We recommend further development of standards, including minimum TS and analytical cell size, for reducing the effect of biased in situ TS on density estimates.
The Amount of Noise Inherent in Bandwidth Selection for a Kernel Density Estimator.
1985-05-01
KERNEL DENSITY ESTIMATOR by ’r Peter Hall anzd James Stephen MarronOC15W 0-Technical Report No.j" 6-J 85 10 11 173 . REP - U... .c- , =... a. REPORT...DENSIY’ ESTIMATOR 1.2 PERSCNAL AUTmORS) Peter Hall and James Stephen Marron F&~EREPOR. 13b. TIMS COVE RED 14. DATE OF REPORT fYr.. Ito., Day,p IS. PAGE...Toulujic: ! . :. Divi.ion THE AMOUNT OF NOISE INHERENT IN BANDWIDTH SELECTION FOR A KERNEL DENSITY ESTIMATOR by Peter Hall" 2 and James Stephen
Cetacean population density estimation from single fixed sensors using passive acoustics.
Küsel, Elizabeth T; Mellinger, David K; Thomas, Len; Marques, Tiago A; Moretti, David; Ward, Jessica
2011-06-01
Passive acoustic methods are increasingly being used to estimate animal population density. Most density estimation methods are based on estimates of the probability of detecting calls as functions of distance. Typically these are obtained using receivers capable of localizing calls or from studies of tagged animals. However, both approaches are expensive to implement. The approach described here uses a MonteCarlo model to estimate the probability of detecting calls from single sensors. The passive sonar equation is used to predict signal-to-noise ratios (SNRs) of received clicks, which are then combined with a detector characterization that predicts probability of detection as a function of SNR. Input distributions for source level, beam pattern, and whale depth are obtained from the literature. Acoustic propagation modeling is used to estimate transmission loss. Other inputs for density estimation are call rate, obtained from the literature, and false positive rate, obtained from manual analysis of a data sample. The method is applied to estimate density of Blainville's beaked whales over a 6-day period around a single hydrophone located in the Tongue of the Ocean, Bahamas. Results are consistent with those from previous analyses, which use additional tag data.
On the analysis of wavelet-based approaches for print grain artifacts
NASA Astrophysics Data System (ADS)
Eid, Ahmed H.; Cooper, Brian E.; Rippetoe, Edward E.
2013-01-01
Grain is one of several attributes described in ISO/IEC TS 24790, a technical specification for the measurement of image quality for monochrome printed output. It defines grain as aperiodic fluctuations of lightness greater than 0.4 cycles per millimeter, a definition inherited from the latest official standard on printed image quality, ISO/IEC 13660. Since this definition places no bounds on the upper frequency range, higher-frequency fluctuations (such as those from the printer's halftone pattern) could contribute significantly to the measurement of grain artifacts. In a previous publication, we introduced a modification to the ISO/IEC 13660 grain measurement algorithm that includes a band-pass, wavelet-based, filtering step to limit the contribution of high-frequency fluctuations. This modification improves the algorithm's correlation with the subjective evaluation of experts who rated the severity of printed grain artifacts. Seeking to improve upon the grain algorithm in ISO/IEC 13660, the ISO/IEC TS 24790 committee evaluated several graininess metrics. This led to the selection of the above wavelet-based approach as the top candidate algorithm for inclusion in a future ISO/IEC standard. Our recent experimental results showed r2 correlation of 0.9278 between the wavelet-based approach and the subjective evaluation conducted by the ISO committee members based upon 26 samples covering a variety of printed grain artifacts. On the other hand, our experiments on the same data set showed much lower correlation (r2 = 0.3555) between the ISO/IEC 13660 approach and the same subjective evaluation of the ISO committee members. In addition, we introduce an alternative approach for measuring grain defects based on spatial frequency analysis of wavelet-filtered images. Our goal is to establish a link between the spatial-based grain (ISO/IEC TS 24790) approach and its equivalent frequency-based one in light of Parseval's theorem. Our experimental results showed r2 correlation
Simplified Computation for Nonparametric Windows Method of Probability Density Function Estimation.
Joshi, Niranjan; Kadir, Timor; Brady, Michael
2011-08-01
Recently, Kadir and Brady proposed a method for estimating probability density functions (PDFs) for digital signals which they call the Nonparametric (NP) Windows method. The method involves constructing a continuous space representation of the discrete space and sampled signal by using a suitable interpolation method. NP Windows requires only a small number of observed signal samples to estimate the PDF and is completely data driven. In this short paper, we first develop analytical formulae to obtain the NP Windows PDF estimates for 1D, 2D, and 3D signals, for different interpolation methods. We then show that the original procedure to calculate the PDF estimate can be significantly simplified and made computationally more efficient by a judicious choice of the frame of reference. We have also outlined specific algorithmic details of the procedures enabling quick implementation. Our reformulation of the original concept has directly demonstrated a close link between the NP Windows method and the Kernel Density Estimator.
Estimating population density and connectivity of American mink using spatial capture-recapture
Fuller, Angela K.; Sutherland, Christopher S.; Royle, Andy; Hare, Matthew P.
2016-01-01
Estimating the abundance or density of populations is fundamental to the conservation and management of species, and as landscapes become more fragmented, maintaining landscape connectivity has become one of the most important challenges for biodiversity conservation. Yet these two issues have never been formally integrated together in a model that simultaneously models abundance while accounting for connectivity of a landscape. We demonstrate an application of using capture–recapture to develop a model of animal density using a least-cost path model for individual encounter probability that accounts for non-Euclidean connectivity in a highly structured network. We utilized scat detection dogs (Canis lupus familiaris) as a means of collecting non-invasive genetic samples of American mink (Neovison vison) individuals and used spatial capture–recapture models (SCR) to gain inferences about mink population density and connectivity. Density of mink was not constant across the landscape, but rather increased with increasing distance from city, town, or village centers, and mink activity was associated with water. The SCR model allowed us to estimate the density and spatial distribution of individuals across a 388 km2 area. The model was used to investigate patterns of space usage and to evaluate covariate effects on encounter probabilities, including differences between sexes. This study provides an application of capture–recapture models based on ecological distance, allowing us to directly estimate landscape connectivity. This approach should be widely applicable to provide simultaneous direct estimates of density, space usage, and landscape connectivity for many species.
Glacial density and GIA in Alaska estimated from ICESat, GPS and GRACE measurements
NASA Astrophysics Data System (ADS)
Jin, Shuanggen; Zhang, T. Y.; Zou, F.
2017-01-01
The density of glacial volume change in Alaska is a key factor in estimating the glacier mass loss from altimetry observations. However, the density of Alaskan glaciers has large uncertainty due to the lack of in situ measurements. In this paper, using the measurements of Ice, Cloud, and land Elevation Satellite (ICESat), Global Positioning System (GPS), and Gravity Recovery and Climate Experiment (GRACE) from 2003 to 2009, an optimal density of glacial volume change with 750 kg/m3 is estimated for the first time to fit the measurements. The glacier mass loss is -57.5 ± 6.5 Gt by converting the volumetric change from ICESat with the estimated density 750 kg/m3. Based on the empirical relation, the depth-density profiles are constructed, which show glacial density variation information with depths in Alaska. By separating the glacier mass loss from glacial isostatic adjustment (GIA) effects in GPS uplift rates and GRACE total water storage trends, the GIA uplift rates are estimated in Alaska. The best fitting model consists of a 60 km elastic lithosphere and 110 km thick asthenosphere with a viscosity of 2.0 × 1019 Pa s over a two-layer mantle.
Estimating population density and connectivity of American mink using spatial capture-recapture.
Fuller, Angela K; Sutherland, Chris S; Royle, J Andrew; Hare, Matthew P
2016-06-01
Estimating the abundance or density of populations is fundamental to the conservation and management of species, and as landscapes become more fragmented, maintaining landscape connectivity has become one of the most important challenges for biodiversity conservation. Yet these two issues have never been formally integrated together in a model that simultaneously models abundance while accounting for connectivity of a landscape. We demonstrate an application of using capture-recapture to develop a model of animal density using a least-cost path model for individual encounter probability that accounts for non-Euclidean connectivity in a highly structured network. We utilized scat detection dogs (Canis lupus familiaris) as a means of collecting non-invasive genetic samples of American mink (Neovison vison) individuals and used spatial capture-recapture models (SCR) to gain inferences about mink population density and connectivity. Density of mink was not constant across the landscape, but rather increased with increasing distance from city, town, or village centers, and mink activity was associated with water. The SCR model allowed us to estimate the density and spatial distribution of individuals across a 388 km² area. The model was used to investigate patterns of space usage and to evaluate covariate effects on encounter probabilities, including differences between sexes. This study provides an application of capture-recapture models based on ecological distance, allowing us to directly estimate landscape connectivity. This approach should be widely applicable to provide simultaneous direct estimates of density, space usage, and landscape connectivity for many species.
Royle, J. Andrew; Chandler, Richard B.; Gazenski, Kimberly D.; Graves, Tabitha A.
2013-01-01
Population size and landscape connectivity are key determinants of population viability, yet no methods exist for simultaneously estimating density and connectivity parameters. Recently developed spatial capture–recapture (SCR) models provide a framework for estimating density of animal populations but thus far have not been used to study connectivity. Rather, all applications of SCR models have used encounter probability models based on the Euclidean distance between traps and animal activity centers, which implies that home ranges are stationary, symmetric, and unaffected by landscape structure. In this paper we devise encounter probability models based on “ecological distance,” i.e., the least-cost path between traps and activity centers, which is a function of both Euclidean distance and animal movement behavior in resistant landscapes. We integrate least-cost path models into a likelihood-based estimation scheme for spatial capture–recapture models in order to estimate population density and parameters of the least-cost encounter probability model. Therefore, it is possible to make explicit inferences about animal density, distribution, and landscape connectivity as it relates to animal movement from standard capture–recapture data. Furthermore, a simulation study demonstrated that ignoring landscape connectivity can result in negatively biased density estimators under the naive SCR model.
Effect of compression paddle tilt correction on volumetric breast density estimation.
Kallenberg, Michiel G J; van Gils, Carla H; Lokate, Mariëtte; den Heeten, Gerard J; Karssemeijer, Nico
2012-08-21
For the acquisition of a mammogram, a breast is compressed between a compression paddle and a support table. When compression is applied with a flexible compression paddle, the upper plate may be tilted, which results in variation in breast thickness from the chest wall to the breast margin. Paddle tilt has been recognized as a major problem in volumetric breast density estimation methods. In previous work, we developed a fully automatic method to correct the image for the effect of compression paddle tilt. In this study, we investigated in three experiments the effect of paddle tilt and its correction on volumetric breast density estimation. Results showed that paddle tilt considerably affected accuracy of volumetric breast density estimation, but that effect could be reduced by tilt correction. By applying tilt correction, a significant increase in correspondence between mammographic density estimates and measurements on MRI was established. We argue that in volumetric breast density estimation, tilt correction is both feasible and essential when mammographic images are acquired with a flexible compression paddle.
Royle, J Andrew; Chandler, Richard B; Gazenski, Kimberly D; Graves, Tabitha A
2013-02-01
Population size and landscape connectivity are key determinants of population viability, yet no methods exist for simultaneously estimating density and connectivity parameters. Recently developed spatial capture--recapture (SCR) models provide a framework for estimating density of animal populations but thus far have not been used to study connectivity. Rather, all applications of SCR models have used encounter probability models based on the Euclidean distance between traps and animal activity centers, which implies that home ranges are stationary, symmetric, and unaffected by landscape structure. In this paper we devise encounter probability models based on "ecological distance," i.e., the least-cost path between traps and activity centers, which is a function of both Euclidean distance and animal movement behavior in resistant landscapes. We integrate least-cost path models into a likelihood-based estimation scheme for spatial capture-recapture models in order to estimate population density and parameters of the least-cost encounter probability model. Therefore, it is possible to make explicit inferences about animal density, distribution, and landscape connectivity as it relates to animal movement from standard capture-recapture data. Furthermore, a simulation study demonstrated that ignoring landscape connectivity can result in negatively biased density estimators under the naive SCR model.
An analytic model of toroidal half-wave oscillations: Implication on plasma density estimates
NASA Astrophysics Data System (ADS)
Bulusu, Jayashree; Sinha, A. K.; Vichare, Geeta
2015-06-01
The developed analytic model for toroidal oscillations under infinitely conducting ionosphere ("Rigid-end") has been extended to "Free-end" case when the conjugate ionospheres are infinitely resistive. The present direct analytic model (DAM) is the only analytic model that provides the field line structures of electric and magnetic field oscillations associated with the "Free-end" toroidal wave for generalized plasma distribution characterized by the power law ρ = ρo(ro/r)m, where m is the density index and r is the geocentric distance to the position of interest on the field line. This is important because different regions in the magnetosphere are characterized by different m. Significant improvement over standard WKB solution and an excellent agreement with the numerical exact solution (NES) affirms validity and advancement of DAM. In addition, we estimate the equatorial ion number density (assuming H+ atom as the only species) using DAM, NES, and standard WKB for Rigid-end as well as Free-end case and illustrate their respective implications in computing ion number density. It is seen that WKB method overestimates the equatorial ion density under Rigid-end condition and underestimates the same under Free-end condition. The density estimates through DAM are far more accurate than those computed through WKB. The earlier analytic estimates of ion number density were restricted to m = 6, whereas DAM can account for generalized m while reproducing the density for m = 6 as envisaged by earlier models.
Estimation of tiger densities in India using photographic captures and recaptures
Karanth, U.; Nichols, J.D.
1998-01-01
Previously applied methods for estimating tiger (Panthera tigris) abundance using total counts based on tracks have proved unreliable. In this paper we use a field method proposed by Karanth (1995), combining camera-trap photography to identify individual tigers based on stripe patterns, with capture-recapture estimators. We developed a sampling design for camera-trapping and used the approach to estimate tiger population size and density in four representative tiger habitats in different parts of India. The field method worked well and provided data suitable for analysis using closed capture-recapture models. The results suggest the potential for applying this methodology for estimating abundances, survival rates and other population parameters in tigers and other low density, secretive animal species with distinctive coat patterns or other external markings. Estimated probabilities of photo-capturing tigers present in the study sites ranged from 0.75 - 1.00. The estimated mean tiger densities ranged from 4.1 (SE hat= 1.31) to 11.7 (SE hat= 1.93) tigers/100 km2. The results support the previous suggestions of Karanth and Sunquist (1995) that densities of tigers and other large felids may be primarily determined by prey community structure at a given site.
Estimating detection and density of the Andean cat in the high Andes
Reppucci, J.; Gardner, B.; Lucherini, M.
2011-01-01
The Andean cat (Leopardus jacobita) is one of the most endangered, yet least known, felids. Although the Andean cat is considered at risk of extinction, rigorous quantitative population studies are lacking. Because physical observations of the Andean cat are difficult to make in the wild, we used a camera-trapping array to photo-capture individuals. The survey was conducted in northwestern Argentina at an elevation of approximately 4,200 m during October-December 2006 and April-June 2007. In each year we deployed 22 pairs of camera traps, which were strategically placed. To estimate detection probability and density we applied models for spatial capture-recapture using a Bayesian framework. Estimated densities were 0.07 and 0.12 individual/km 2 for 2006 and 2007, respectively. Mean baseline detection probability was estimated at 0.07. By comparison, densities of the Pampas cat (Leopardus colocolo), another poorly known felid that shares its habitat with the Andean cat, were estimated at 0.74-0.79 individual/km2 in the same study area for 2006 and 2007, and its detection probability was estimated at 0.02. Despite having greater detectability, the Andean cat is rarer in the study region than the Pampas cat. Properly accounting for the detection probability is important in making reliable estimates of density, a key parameter in conservation and management decisions for any species. ?? 2011 American Society of Mammalogists.
Estimating detection and density of the Andean cat in the high Andes
Reppucci, Juan; Gardner, Beth; Lucherini, Mauro
2011-01-01
The Andean cat (Leopardus jacobita) is one of the most endangered, yet least known, felids. Although the Andean cat is considered at risk of extinction, rigorous quantitative population studies are lacking. Because physical observations of the Andean cat are difficult to make in the wild, we used a camera-trapping array to photo-capture individuals. The survey was conducted in northwestern Argentina at an elevation of approximately 4,200 m during October–December 2006 and April–June 2007. In each year we deployed 22 pairs of camera traps, which were strategically placed. To estimate detection probability and density we applied models for spatial capture–recapture using a Bayesian framework. Estimated densities were 0.07 and 0.12 individual/km2 for 2006 and 2007, respectively. Mean baseline detection probability was estimated at 0.07. By comparison, densities of the Pampas cat (Leopardus colocolo), another poorly known felid that shares its habitat with the Andean cat, were estimated at 0.74–0.79 individual/km2 in the same study area for 2006 and 2007, and its detection probability was estimated at 0.02. Despite having greater detectability, the Andean cat is rarer in the study region than the Pampas cat. Properly accounting for the detection probability is important in making reliable estimates of density, a key parameter in conservation and management decisions for any species.
A joint inter- and intrascale statistical model for Bayesian wavelet based image denoising.
Pizurica, Aleksandra; Philips, Wilfried; Lemahieu, Ignace; Acheroy, Marc
2002-01-01
This paper presents a new wavelet-based image denoising method, which extends a "geometrical" Bayesian framework. The new method combines three criteria for distinguishing supposedly useful coefficients from noise: coefficient magnitudes, their evolution across scales and spatial clustering of large coefficients near image edges. These three criteria are combined in a Bayesian framework. The spatial clustering properties are expressed in a prior model. The statistical properties concerning coefficient magnitudes and their evolution across scales are expressed in a joint conditional model. The three main novelties with respect to related approaches are (1) the interscale-ratios of wavelet coefficients are statistically characterized and different local criteria for distinguishing useful coefficients from noise are evaluated, (2) a joint conditional model is introduced, and (3) a novel anisotropic Markov random field prior model is proposed. The results demonstrate an improved denoising performance over related earlier techniques.
Wavelet-based Poisson Solver for use in Particle-In-CellSimulations
Terzic, B.; Mihalcea, D.; Bohn, C.L.; Pogorelov, I.V.
2005-05-13
We report on a successful implementation of a wavelet based Poisson solver for use in 3D particle-in-cell (PIC) simulations. One new aspect of our algorithm is its ability to treat the general(inhomogeneous) Dirichlet boundary conditions (BCs). The solver harnesses advantages afforded by the wavelet formulation, such as sparsity of operators and data sets, existence of effective preconditioners, and the ability simultaneously to remove numerical noise and further compress relevant data sets. Having tested our method as a stand-alone solver on two model problems, we merged it into IMPACT-T to obtain a fully functional serial PIC code. We present and discuss preliminary results of application of the new code to the modeling of the Fermilab/NICADD and AES/JLab photoinjectors.
Ayrulu-Erdem, Birsel; Barshan, Billur
2011-01-01
We extract the informative features of gyroscope signals using the discrete wavelet transform (DWT) decomposition and provide them as input to multi-layer feed-forward artificial neural networks (ANNs) for leg motion classification. Since the DWT is based on correlating the analyzed signal with a prototype wavelet function, selection of the wavelet type can influence the performance of wavelet-based applications significantly. We also investigate the effect of selecting different wavelet families on classification accuracy and ANN complexity and provide a comparison between them. The maximum classification accuracy of 97.7% is achieved with the Daubechies wavelet of order 16 and the reverse bi-orthogonal (RBO) wavelet of order 3.1, both with similar ANN complexity. However, the RBO 3.1 wavelet is preferable because of its lower computational complexity in the DWT decomposition and reconstruction. PMID:22319378
Daniel, Ebenezer; Anitha, J
2016-04-01
Unsharp masking techniques are a prominent approach in contrast enhancement. Generalized masking formulation has static scale value selection, which limits the gain of contrast. In this paper, we propose an Optimum Wavelet Based Masking (OWBM) using Enhanced Cuckoo Search Algorithm (ECSA) for the contrast improvement of medical images. The ECSA can automatically adjust the ratio of nest rebuilding, using genetic operators such as adaptive crossover and mutation. First, the proposed contrast enhancement approach is validated quantitatively using Brain Web and MIAS database images. Later, the conventional nest rebuilding of cuckoo search optimization is modified using Adaptive Rebuilding of Worst Nests (ARWN). Experimental results are analyzed using various performance matrices, and our OWBM shows improved results as compared with other reported literature.
Wavelet-based low-delay ECG compression algorithm for continuous ECG transmission.
Kim, Byung S; Yoo, Sun K; Lee, Moon H
2006-01-01
The delay performance of compression algorithms is particularly important when time-critical data transmission is required. In this paper, we propose a wavelet-based electrocardiogram (ECG) compression algorithm with a low delay property for instantaneous, continuous ECG transmission suitable for telecardiology applications over a wireless network. The proposed algorithm reduces the frame size as much as possible to achieve a low delay, while maintaining reconstructed signal quality. To attain both low delay and high quality, it employs waveform partitioning, adaptive frame size adjustment, wavelet compression, flexible bit allocation, and header compression. The performances of the proposed algorithm in terms of reconstructed signal quality, processing delay, and error resilience were evaluated using the Massachusetts Institute of Technology University and Beth Israel Hospital (MIT-BIH) and Creighton University Ventricular Tachyarrhythmia (CU) databases and a code division multiple access-based simulation model with mobile channel noise.
An Investigation of Wavelet Bases for Grid-Based Multi-Scale Simulations Final Report
Baty, R.S.; Burns, S.P.; Christon, M.A.; Roach, D.W.; Trucano, T.G.; Voth, T.E.; Weatherby, J.R.; Womble, D.E.
1998-11-01
The research summarized in this report is the result of a two-year effort that has focused on evaluating the viability of wavelet bases for the solution of partial differential equations. The primary objective for this work has been to establish a foundation for hierarchical/wavelet simulation methods based upon numerical performance, computational efficiency, and the ability to exploit the hierarchical adaptive nature of wavelets. This work has demonstrated that hierarchical bases can be effective for problems with a dominant elliptic character. However, the strict enforcement of orthogonality was found to be less desirable than weaker semi-orthogonality or bi-orthogonality for solving partial differential equations. This conclusion has led to the development of a multi-scale linear finite element based on a hierarchical change of basis. The reproducing kernel particle method has been found to yield extremely accurate phase characteristics for hyperbolic problems while providing a convenient framework for multi-scale analyses.
Ayrulu-Erdem, Birsel; Barshan, Billur
2011-01-01
We extract the informative features of gyroscope signals using the discrete wavelet transform (DWT) decomposition and provide them as input to multi-layer feed-forward artificial neural networks (ANNs) for leg motion classification. Since the DWT is based on correlating the analyzed signal with a prototype wavelet function, selection of the wavelet type can influence the performance of wavelet-based applications significantly. We also investigate the effect of selecting different wavelet families on classification accuracy and ANN complexity and provide a comparison between them. The maximum classification accuracy of 97.7% is achieved with the Daubechies wavelet of order 16 and the reverse bi-orthogonal (RBO) wavelet of order 3.1, both with similar ANN complexity. However, the RBO 3.1 wavelet is preferable because of its lower computational complexity in the DWT decomposition and reconstruction.
Corrosion in reinforced concrete panels: wireless monitoring and wavelet-based analysis.
Qiao, Guofu; Sun, Guodong; Hong, Yi; Liu, Tiejun; Guan, Xinchun
2014-02-19
To realize the efficient data capture and accurate analysis of pitting corrosion of the reinforced concrete (RC) structures, we first design and implement a wireless sensor and network (WSN) to monitor the pitting corrosion of RC panels, and then, we propose a wavelet-based algorithm to analyze the corrosion state with the corrosion data collected by the wireless platform. We design a novel pitting corrosion-detecting mote and a communication protocol such that the monitoring platform can sample the electrochemical emission signals of corrosion process with a configured period, and send these signals to a central computer for the analysis. The proposed algorithm, based on the wavelet domain analysis, returns the energy distribution of the electrochemical emission data, from which close observation and understanding can be further achieved. We also conducted test-bed experiments based on RC panels. The results verify the feasibility and efficiency of the proposed WSN system and algorithms.
Malloy, Elizabeth J.; Morris, Jeffrey S.; Adar, Sara D.; Suh, Helen; Gold, Diane R.; Coull, Brent A.
2010-01-01
Frequently, exposure data are measured over time on a grid of discrete values that collectively define a functional observation. In many applications, researchers are interested in using these measurements as covariates to predict a scalar response in a regression setting, with interest focusing on the most biologically relevant time window of exposure. One example is in panel studies of the health effects of particulate matter (PM), where particle levels are measured over time. In such studies, there are many more values of the functional data than observations in the data set so that regularization of the corresponding functional regression coefficient is necessary for estimation. Additional issues in this setting are the possibility of exposure measurement error and the need to incorporate additional potential confounders, such as meteorological or co-pollutant measures, that themselves may have effects that vary over time. To accommodate all these features, we develop wavelet-based linear mixed distributed lag models that incorporate repeated measures of functional data as covariates into a linear mixed model. A Bayesian approach to model fitting uses wavelet shrinkage to regularize functional coefficients. We show that, as long as the exposure error induces fine-scale variability in the functional exposure profile and the distributed lag function representing the exposure effect varies smoothly in time, the model corrects for the exposure measurement error without further adjustment. Both these conditions are likely to hold in the environmental applications we consider. We examine properties of the method using simulations and apply the method to data from a study examining the association between PM, measured as hourly averages for 1–7 days, and markers of acute systemic inflammation. We use the method to fully control for the effects of confounding by other time-varying predictors, such as temperature and co-pollutants. PMID:20156988
Effects of tissue heterogeneity on the optical estimate of breast density
Taroni, Paola; Pifferi, Antonio; Quarto, Giovanna; Spinelli, Lorenzo; Torricelli, Alessandro; Abbate, Francesca; Balestreri, Nicola; Ganino, Serena; Menna, Simona; Cassano, Enrico; Cubeddu, Rinaldo
2012-01-01
Breast density is a recognized strong and independent risk factor for developing breast cancer. At present, breast density is assessed based on the radiological appearance of breast tissue, thus relying on the use of ionizing radiation. We have previously obtained encouraging preliminary results with our portable instrument for time domain optical mammography performed at 7 wavelengths (635–1060 nm). In that case, information was averaged over four images (cranio-caudal and oblique views of both breasts) available for each subject. In the present work, we tested the effectiveness of just one or few point measurements, to investigate if tissue heterogeneity significantly affects the correlation between optically derived parameters and mammographic density. Data show that parameters estimated through a single optical measurement correlate strongly with mammographic density estimated by using BIRADS categories. A central position is optimal for the measurement, but its exact location is not critical. PMID:23082283
Fast and accurate probability density estimation in large high dimensional astronomical datasets
NASA Astrophysics Data System (ADS)
Gupta, Pramod; Connolly, Andrew J.; Gardner, Jeffrey P.
2015-01-01
Astronomical surveys will generate measurements of hundreds of attributes (e.g. color, size, shape) on hundreds of millions of sources. Analyzing these large, high dimensional data sets will require efficient algorithms for data analysis. An example of this is probability density estimation that is at the heart of many classification problems such as the separation of stars and quasars based on their colors. Popular density estimation techniques use binning or kernel density estimation. Kernel density estimation has a small memory footprint but often requires large computational resources. Binning has small computational requirements but usually binning is implemented with multi-dimensional arrays which leads to memory requirements which scale exponentially with the number of dimensions. Hence both techniques do not scale well to large data sets in high dimensions. We present an alternative approach of binning implemented with hash tables (BASH tables). This approach uses the sparseness of data in the high dimensional space to ensure that the memory requirements are small. However hashing requires some extra computation so a priori it is not clear if the reduction in memory requirements will lead to increased computational requirements. Through an implementation of BASH tables in C++ we show that the additional computational requirements of hashing are negligible. Hence this approach has small memory and computational requirements. We apply our density estimation technique to photometric selection of quasars using non-parametric Bayesian classification and show that the accuracy of the classification is same as the accuracy of earlier approaches. Since the BASH table approach is one to three orders of magnitude faster than the earlier approaches it may be useful in various other applications of density estimation in astrostatistics.
Trap array configuration influences estimates and precision of black bear density and abundance.
Wilton, Clay M; Puckett, Emily E; Beringer, Jeff; Gardner, Beth; Eggert, Lori S; Belant, Jerrold L
2014-01-01
Spatial capture-recapture (SCR) models have advanced our ability to estimate population density for wide ranging animals by explicitly incorporating individual movement. Though these models are more robust to various spatial sampling designs, few studies have empirically tested different large-scale trap configurations using SCR models. We investigated how extent of trap coverage and trap spacing affects precision and accuracy of SCR parameters, implementing models using the R package secr. We tested two trapping scenarios, one spatially extensive and one intensive, using black bear (Ursus americanus) DNA data from hair snare arrays in south-central Missouri, USA. We also examined the influence that adding a second, lower barbed-wire strand to snares had on quantity and spatial distribution of detections. We simulated trapping data to test bias in density estimates of each configuration under a range of density and detection parameter values. Field data showed that using multiple arrays with intensive snare coverage produced more detections of more individuals than extensive coverage. Consequently, density and detection parameters were more precise for the intensive design. Density was estimated as 1.7 bears per 100 km2 and was 5.5 times greater than that under extensive sampling. Abundance was 279 (95% CI = 193-406) bears in the 16,812 km2 study area. Excluding detections from the lower strand resulted in the loss of 35 detections, 14 unique bears, and the largest recorded movement between snares. All simulations showed low bias for density under both configurations. Results demonstrated that in low density populations with non-uniform distribution of population density, optimizing the tradeoff among snare spacing, coverage, and sample size is of critical importance to estimating parameters with high precision and accuracy. With limited resources, allocating available traps to multiple arrays with intensive trap spacing increased the amount of information
Trap Array Configuration Influences Estimates and Precision of Black Bear Density and Abundance
Wilton, Clay M.; Puckett, Emily E.; Beringer, Jeff; Gardner, Beth; Eggert, Lori S.; Belant, Jerrold L.
2014-01-01
Spatial capture-recapture (SCR) models have advanced our ability to estimate population density for wide ranging animals by explicitly incorporating individual movement. Though these models are more robust to various spatial sampling designs, few studies have empirically tested different large-scale trap configurations using SCR models. We investigated how extent of trap coverage and trap spacing affects precision and accuracy of SCR parameters, implementing models using the R package secr. We tested two trapping scenarios, one spatially extensive and one intensive, using black bear (Ursus americanus) DNA data from hair snare arrays in south-central Missouri, USA. We also examined the influence that adding a second, lower barbed-wire strand to snares had on quantity and spatial distribution of detections. We simulated trapping data to test bias in density estimates of each configuration under a range of density and detection parameter values. Field data showed that using multiple arrays with intensive snare coverage produced more detections of more individuals than extensive coverage. Consequently, density and detection parameters were more precise for the intensive design. Density was estimated as 1.7 bears per 100 km2 and was 5.5 times greater than that under extensive sampling. Abundance was 279 (95% CI = 193–406) bears in the 16,812 km2 study area. Excluding detections from the lower strand resulted in the loss of 35 detections, 14 unique bears, and the largest recorded movement between snares. All simulations showed low bias for density under both configurations. Results demonstrated that in low density populations with non-uniform distribution of population density, optimizing the tradeoff among snare spacing, coverage, and sample size is of critical importance to estimating parameters with high precision and accuracy. With limited resources, allocating available traps to multiple arrays with intensive trap spacing increased the amount of information
2014-09-30
was repeated every 5 days throughout the year, and a video was produced showing fin whale density over the course of the year. RESULTS Fin...whale density was estimated across the area of the hydrophone array over the course of the year and a video was produced. This video , and the methods...America (Mellinger et al. 2014). Figure 4 shows a frame from this video . A paper about this work is also in preparation for submission to J
Estimation of stratospheric-mesospheric density fields from satellite radiance data
NASA Technical Reports Server (NTRS)
Quiroz, R. S.
1974-01-01
Description of a method for deriving horizontal density fields at altitudes above 30 km directly from satellite radiation measurements. The method is applicable to radiation measurements from any instrument with suitable transmittance weighting functions. Data such as those acquired by the Satellite Infrared Spectrometers on satellites Nimbus 3 and 4 are employed for demonstrating the use of the method for estimating stratospheric-mesospheric density fields.
An automatic iris occlusion estimation method based on high-dimensional density estimation.
Li, Yung-Hui; Savvides, Marios
2013-04-01
Iris masks play an important role in iris recognition. They indicate which part of the iris texture map is useful and which part is occluded or contaminated by noisy image artifacts such as eyelashes, eyelids, eyeglasses frames, and specular reflections. The accuracy of the iris mask is extremely important. The performance of the iris recognition system will decrease dramatically when the iris mask is inaccurate, even when the best recognition algorithm is used. Traditionally, people used the rule-based algorithms to estimate iris masks from iris images. However, the accuracy of the iris masks generated this way is questionable. In this work, we propose to use Figueiredo and Jain's Gaussian Mixture Models (FJ-GMMs) to model the underlying probabilistic distributions of both valid and invalid regions on iris images. We also explored possible features and found that Gabor Filter Bank (GFB) provides the most discriminative information for our goal. Finally, we applied Simulated Annealing (SA) technique to optimize the parameters of GFB in order to achieve the best recognition rate. Experimental results show that the masks generated by the proposed algorithm increase the iris recognition rate on both ICE2 and UBIRIS dataset, verifying the effectiveness and importance of our proposed method for iris occlusion estimation.
Maximum likelihood estimation of the mixture of log-concave densities.
Hu, Hao; Wu, Yichao; Yao, Weixin
2016-09-01
Finite mixture models are useful tools and can be estimated via the EM algorithm. A main drawback is the strong parametric assumption about the component densities. In this paper, a much more flexible mixture model is considered, which assumes each component density to be log-concave. Under fairly general conditions, the log-concave maximum likelihood estimator (LCMLE) exists and is consistent. Numeric examples are also made to demonstrate that the LCMLE improves the clustering results while comparing with the traditional MLE for parametric mixture models.
A Statistical Analysis for Estimating Fish Number Density with the Use of a Multibeam Echosounder
NASA Astrophysics Data System (ADS)
Schroth-Miller, Madeline L.
Fish number density can be estimated from the normalized second moment of acoustic backscatter intensity [Denbigh et al., J. Acoust. Soc. Am. 90, 457-469 (1991)]. This method assumes that the distribution of fish scattering amplitudes is known and that the fish are randomly distributed following a Poisson volume distribution within regions of constant density. It is most useful at low fish densities, relative to the resolution of the acoustic device being used, since the estimators quickly become noisy as the number of fish per resolution cell increases. New models that include noise contributions are considered. The methods were applied to an acoustic assessment of juvenile Atlantic Bluefin Tuna, Thunnus thynnus. The data were collected using a 400 kHz multibeam echo sounder during the summer months of 2009 in Cape Cod, MA. Due to the high resolution of the multibeam system used, the large size (approx. 1.5 m) of the tuna, and the spacing of the fish in the school, we expect there to be low fish densities relative to the resolution of the multibeam system. Results of the fish number density based on the normalized second moment of acoustic intensity are compared to fish packing density estimated using aerial imagery that was collected simultaneously.
Estimating the amount and distribution of radon flux density from the soil surface in China.
Zhuo, Weihai; Guo, Qiuju; Chen, Bo; Cheng, Guan
2008-07-01
Based on an idealized model, both the annual and the seasonal radon ((222)Rn) flux densities from the soil surface at 1099 sites in China were estimated by linking a database of soil (226)Ra content and a global ecosystems database. Digital maps of the (222)Rn flux density in China were constructed in a spatial resolution of 25 km x 25 km by interpolation among the estimated data. An area-weighted annual average (222)Rn flux density from the soil surface across China was estimated to be 29.7+/-9.4 mBq m(-2)s(-1). Both regional and seasonal variations in the (222)Rn flux densities are significant in China. Annual average flux densities in the southeastern and northwestern China are generally higher than those in other regions of China, because of high soil (226)Ra content in the southeastern area and high soil aridity in the northwestern one. The seasonal average flux density is generally higher in summer/spring than winter, since relatively higher soil temperature and lower soil water saturation in summer/spring than other seasons are common in China.
Hierarchical models for estimating density from DNA mark-recapture studies
Gardner, B.; Royle, J. Andrew; Wegan, M.T.
2009-01-01
Genetic sampling is increasingly used as a tool by wildlife biologists and managers to estimate abundance and density of species. Typically, DNA is used to identify individuals captured in an array of traps ( e. g., baited hair snares) from which individual encounter histories are derived. Standard methods for estimating the size of a closed population can be applied to such data. However, due to the movement of individuals on and off the trapping array during sampling, the area over which individuals are exposed to trapping is unknown, and so obtaining unbiased estimates of density has proved difficult. We propose a hierarchical spatial capture-recapture model which contains explicit models for the spatial point process governing the distribution of individuals and their exposure to (via movement) and detection by traps. Detection probability is modeled as a function of each individual's distance to the trap. We applied this model to a black bear (Ursus americanus) study conducted in 2006 using a hair-snare trap array in the Adirondack region of New York, USA. We estimated the density of bears to be 0.159 bears/km2, which is lower than the estimated density (0.410 bears/km2) based on standard closed population techniques. A Bayesian analysis of the model is fully implemented in the software program WinBUGS.
Brassine, Eléanor; Parker, Daniel
2015-01-01
Camera trapping studies have become increasingly popular to produce population estimates of individually recognisable mammals. Yet, monitoring techniques for rare species which occur at extremely low densities are lacking. Additionally, species which have unpredictable movements may make obtaining reliable population estimates challenging due to low detectability. Our study explores the effectiveness of intensive camera trapping for estimating cheetah (Acinonyx jubatus) numbers. Using both a more traditional, systematic grid approach and pre-determined, targeted sites for camera placement, the cheetah population of the Northern Tuli Game Reserve, Botswana was sampled between December 2012 and October 2013. Placement of cameras in a regular grid pattern yielded very few (n = 9) cheetah images and these were insufficient to estimate cheetah density. However, pre-selected cheetah scent-marking posts provided 53 images of seven adult cheetahs (0.61 ± 0.18 cheetahs/100 km²). While increasing the length of the camera trapping survey from 90 to 130 days increased the total number of cheetah images obtained (from 53 to 200), no new individuals were recorded and the estimated population density remained stable. Thus, our study demonstrates that targeted camera placement (irrespective of survey duration) is necessary for reliably assessing cheetah densities where populations are naturally very low or dominated by transient individuals. Significantly our approach can easily be applied to other rare predator species.
High-order ionospheric effects on electron density estimation from Fengyun-3C GPS radio occultation
NASA Astrophysics Data System (ADS)
Li, Junhai; Jin, Shuanggen
2017-03-01
GPS radio occultation can estimate ionospheric electron density and total electron content (TEC) with high spatial resolution, e.g., China's recent Fengyun-3C GPS radio occultation. However, high-order ionospheric delays are normally ignored. In this paper, the high-order ionospheric effects on electron density estimation from the Fengyun-3C GPS radio occultation data are estimated and investigated using the NeQuick2 ionosphere model and the IGRF12 (International Geomagnetic Reference Field, 12th generation) geomagnetic model. Results show that the high-order ionospheric delays have large effects on electron density estimation with up to 800 el cm-3, which should be corrected in high-precision ionospheric density estimation and applications. The second-order ionospheric effects are more significant, particularly at 250-300 km, while third-order ionospheric effects are much smaller. Furthermore, the high-order ionospheric effects are related to the location, the local time, the radio occultation azimuth and the solar activity. The large high-order ionospheric effects are found in the low-latitude area and in the daytime as well as during strong solar activities. The second-order ionospheric effects have a maximum positive value when the radio occultation azimuth is around 0-20°, and a maximum negative value when the radio occultation azimuth is around -180 to -160°. Moreover, the geomagnetic storm also affects the high-order ionospheric delay, which should be carefully corrected.
Brassine, Eléanor; Parker, Daniel
2015-01-01
Camera trapping studies have become increasingly popular to produce population estimates of individually recognisable mammals. Yet, monitoring techniques for rare species which occur at extremely low densities are lacking. Additionally, species which have unpredictable movements may make obtaining reliable population estimates challenging due to low detectability. Our study explores the effectiveness of intensive camera trapping for estimating cheetah (Acinonyx jubatus) numbers. Using both a more traditional, systematic grid approach and pre-determined, targeted sites for camera placement, the cheetah population of the Northern Tuli Game Reserve, Botswana was sampled between December 2012 and October 2013. Placement of cameras in a regular grid pattern yielded very few (n = 9) cheetah images and these were insufficient to estimate cheetah density. However, pre-selected cheetah scent-marking posts provided 53 images of seven adult cheetahs (0.61 ± 0.18 cheetahs/100km²). While increasing the length of the camera trapping survey from 90 to 130 days increased the total number of cheetah images obtained (from 53 to 200), no new individuals were recorded and the estimated population density remained stable. Thus, our study demonstrates that targeted camera placement (irrespective of survey duration) is necessary for reliably assessing cheetah densities where populations are naturally very low or dominated by transient individuals. Significantly our approach can easily be applied to other rare predator species. PMID:26698574
Williams, C R; Johnson, P H; Ball, T S; Ritchie, S A
2013-09-01
New mosquito control strategies centred on the modifying of populations require knowledge of existing population densities at release sites and an understanding of breeding site ecology. Using a quantitative pupal survey method, we investigated production of the dengue vector Aedes aegypti (L.) (Stegomyia aegypti) (Diptera: Culicidae) in Cairns, Queensland, Australia, and found that garden accoutrements represented the most common container type. Deliberately placed 'sentinel' containers were set at seven houses and sampled for pupae over 10 weeks during the wet season. Pupal production was approximately constant; tyres and buckets represented the most productive container types. Sentinel tyres produced the largest female mosquitoes, but were relatively rare in the field survey. We then used field-collected data to make estimates of per premises population density using three different approaches. Estimates of female Ae. aegypti abundance per premises made using the container-inhabiting mosquito simulation (CIMSiM) model [95% confidence interval (CI) 18.5-29.1 females] concorded reasonably well with estimates obtained using a standing crop calculation based on pupal collections (95% CI 8.8-22.5) and using BG-Sentinel traps and a sampling rate correction factor (95% CI 6.2-35.2). By first describing local Ae. aegypti productivity, we were able to compare three separate population density estimates which provided similar results. We anticipate that this will provide researchers and health officials with several tools with which to make estimates of population densities.
A hierarchical model for estimating density in camera-trap studies
Royle, J. Andrew; Nichols, James D.; Karanth, K.Ullas; Gopalaswamy, Arjun M.
2009-01-01
Estimating animal density using capture–recapture data from arrays of detection devices such as camera traps has been problematic due to the movement of individuals and heterogeneity in capture probability among them induced by differential exposure to trapping.We develop a spatial capture–recapture model for estimating density from camera-trapping data which contains explicit models for the spatial point process governing the distribution of individuals and their exposure to and detection by traps.We adopt a Bayesian approach to analysis of the hierarchical model using the technique of data augmentation.The model is applied to photographic capture–recapture data on tigers Panthera tigris in Nagarahole reserve, India. Using this model, we estimate the density of tigers to be 14·3 animals per 100 km2 during 2004.Synthesis and applications. Our modelling framework largely overcomes several weaknesses in conventional approaches to the estimation of animal density from trap arrays. It effectively deals with key problems such as individual heterogeneity in capture probabilities, movement of traps, presence of potential ‘holes’ in the array and ad hoc estimation of sample area. The formulation, thus, greatly enhances flexibility in the conduct of field surveys as well as in the analysis of data, from studies that may involve physical, photographic or DNA-based ‘captures’ of individual animals.
Marques, Tiago A; Thomas, Len; Ward, Jessica; DiMarzio, Nancy; Tyack, Peter L
2009-04-01
Methods are developed for estimating the size/density of cetacean populations using data from a set of fixed passive acoustic sensors. The methods convert the number of detected acoustic cues into animal density by accounting for (i) the probability of detecting cues, (ii) the rate at which animals produce cues, and (iii) the proportion of false positive detections. Additional information is often required for estimation of these quantities, for example, from an acoustic tag applied to a sample of animals. Methods are illustrated with a case study: estimation of Blainville's beaked whale density over a 6 day period in spring 2005, using an 82 hydrophone wide-baseline array located in the Tongue of the Ocean, Bahamas. To estimate the required quantities, additional data are used from digital acoustic tags, attached to five whales over 21 deep dives, where cues recorded on some of the dives are associated with those received on the fixed hydrophones. Estimated density was 25.3 or 22.5 animals/1000 km(2), depending on assumptions about false positive detections, with 95% confidence intervals 17.3-36.9 and 15.4-32.9. These methods are potentially applicable to a wide variety of marine and terrestrial species that are hard to survey using conventional visual methods.
Scent Lure Effect on Camera-Trap Based Leopard Density Estimates
Braczkowski, Alexander Richard; Balme, Guy Andrew; Dickman, Amy; Fattebert, Julien; Johnson, Paul; Dickerson, Tristan; Macdonald, David Whyte; Hunter, Luke
2016-01-01
Density estimates for large carnivores derived from camera surveys often have wide confidence intervals due to low detection rates. Such estimates are of limited value to authorities, which require precise population estimates to inform conservation strategies. Using lures can potentially increase detection, improving the precision of estimates. However, by altering the spatio-temporal patterning of individuals across the camera array, lures may violate closure, a fundamental assumption of capture-recapture. Here, we test the effect of scent lures on the precision and veracity of density estimates derived from camera-trap surveys of a protected African leopard population. We undertook two surveys (a ‘control’ and ‘treatment’ survey) on Phinda Game Reserve, South Africa. Survey design remained consistent except a scent lure was applied at camera-trap stations during the treatment survey. Lures did not affect the maximum movement distances (p = 0.96) or temporal activity of female (p = 0.12) or male leopards (p = 0.79), and the assumption of geographic closure was met for both surveys (p >0.05). The numbers of photographic captures were also similar for control and treatment surveys (p = 0.90). Accordingly, density estimates were comparable between surveys (although estimates derived using non-spatial methods (7.28–9.28 leopards/100km2) were considerably higher than estimates from spatially-explicit methods (3.40–3.65 leopards/100km2). The precision of estimates from the control and treatment surveys, were also comparable and this applied to both non-spatial and spatial methods of estimation. Our findings suggest that at least in the context of leopard research in productive habitats, the use of lures is not warranted. PMID:27050816
Scent Lure Effect on Camera-Trap Based Leopard Density Estimates.
Braczkowski, Alexander Richard; Balme, Guy Andrew; Dickman, Amy; Fattebert, Julien; Johnson, Paul; Dickerson, Tristan; Macdonald, David Whyte; Hunter, Luke
2016-01-01
Density estimates for large carnivores derived from camera surveys often have wide confidence intervals due to low detection rates. Such estimates are of limited value to authorities, which require precise population estimates to inform conservation strategies. Using lures can potentially increase detection, improving the precision of estimates. However, by altering the spatio-temporal patterning of individuals across the camera array, lures may violate closure, a fundamental assumption of capture-recapture. Here, we test the effect of scent lures on the precision and veracity of density estimates derived from camera-trap surveys of a protected African leopard population. We undertook two surveys (a 'control' and 'treatment' survey) on Phinda Game Reserve, South Africa. Survey design remained consistent except a scent lure was applied at camera-trap stations during the treatment survey. Lures did not affect the maximum movement distances (p = 0.96) or temporal activity of female (p = 0.12) or male leopards (p = 0.79), and the assumption of geographic closure was met for both surveys (p >0.05). The numbers of photographic captures were also similar for control and treatment surveys (p = 0.90). Accordingly, density estimates were comparable between surveys (although estimates derived using non-spatial methods (7.28-9.28 leopards/100km2) were considerably higher than estimates from spatially-explicit methods (3.40-3.65 leopards/100km2). The precision of estimates from the control and treatment surveys, were also comparable and this applied to both non-spatial and spatial methods of estimation. Our findings suggest that at least in the context of leopard research in productive habitats, the use of lures is not warranted.
Behavioral Context of Blue and Fin Whale Calling for Density Estimation
2015-09-30
because, as endangered species that are common in many areas of naval activity, they are of special interest to the Navy. In the case of blue whales...coverage for these species . APPROACH We will focus on the current main gap in the density estimation process using passive acoustic data: the...estimation of the average call production rate. We will use blue whales (Balaenoptera musculus) and fin whales (B. physalus) as our model species
Cetacean Density Estimation from Novel Acoustic Datasets by Acoustic Propagation Modeling
2014-09-30
hydrophone, to estimate the population density of false killer whales (Pseudorca crassidens) off of the Kona coast of the Island of Hawai’i... killer whale, suffers from interaction with the fisheries industry and its population has been reported to have declined in the past 20 years. Studies...of abundance estimate of false killer whales in Hawai’i through mark recapture methods will provide comparable results to the ones obtained by this
Behavioral Context of Blue and Fin Whale Calling for Density Estimation
2014-09-30
1 DISTRIBUTION STATEMENT A. Approved for public release; distribution is unlimited. Behavioral context of blue and fin whale calling for...in which we will determine the context-appropriate call production rates for blue and fin whales in the Southern California Bight, with the end goal...of facilitating density estimation from passive acoustic data. OBJECTIVES Before a reliable estimate of blue and fin whale call production rates
Estimation of current density distribution of PAFC by analysis of cell exhaust gas
Kato, S.; Seya, A.; Asano, A.
1996-12-31
To estimate distributions of Current densities, voltages, gas concentrations, etc., in phosphoric acid fuel cell (PAFC) stacks, is very important for getting fuel cells with higher quality. In this work, we leave developed a numerical simulation tool to map out the distribution in a PAFC stack. And especially to Study Current density distribution in the reaction area of the cell, we analyzed gas composition in several positions inside a gas outlet manifold of the PAFC stack. Comparing these measured data with calculated data, the current density distribution in a cell plane calculated by the simulation, was certified.
Estimation of density-dependent mortality of juvenile bivalves in the Wadden Sea.
Andresen, Henrike; Strasser, Matthias; van der Meer, Jaap
2014-01-01
We investigated density-dependent mortality within the early months of life of the bivalves Macoma balthica (Baltic tellin) and Cerastoderma edule (common cockle) in the Wadden Sea. Mortality is thought to be density-dependent in juvenile bivalves, because there is no proportional relationship between the size of the reproductive adult stocks and the numbers of recruits for both species. It is not known however, when exactly density dependence in the pre-recruitment phase occurs and how prevalent it is. The magnitude of recruitment determines year class strength in bivalves. Thus, understanding pre-recruit mortality will improve the understanding of population dynamics. We analyzed count data from three years of temporal sampling during the first months after bivalve settlement at ten transects in the Sylt-Rømø-Bay in the northern German Wadden Sea. Analyses of density dependence are sensitive to bias through measurement error. Measurement error was estimated by bootstrapping, and residual deviances were adjusted by adding process error. With simulations the effect of these two types of error on the estimate of the density-dependent mortality coefficient was investigated. In three out of eight time intervals density dependence was detected for M. balthica, and in zero out of six time intervals for C. edule. Biological or environmental stochastic processes dominated over density dependence at the investigated scale.
Estimating food portions. Influence of unit number, meal type and energy density.
Almiron-Roig, Eva; Solis-Trapala, Ivonne; Dodd, Jessica; Jebb, Susan A
2013-12-01
Estimating how much is appropriate to consume can be difficult, especially for foods presented in multiple units, those with ambiguous energy content and for snacks. This study tested the hypothesis that the number of units (single vs. multi-unit), meal type and food energy density disrupts accurate estimates of portion size. Thirty-two healthy weight men and women attended the laboratory on 3 separate occasions to assess the number of portions contained in 33 foods or beverages of varying energy density (1.7-26.8 kJ/g). Items included 12 multi-unit and 21 single unit foods; 13 were labelled "meal", 4 "drink" and 16 "snack". Departures in portion estimates from reference amounts were analysed with negative binomial regression. Overall participants tended to underestimate the number of portions displayed. Males showed greater errors in estimation than females (p=0.01). Single unit foods and those labelled as 'meal' or 'beverage' were estimated with greater error than multi-unit and 'snack' foods (p=0.02 and p<0.001 respectively). The number of portions of high energy density foods was overestimated while the number of portions of beverages and medium energy density foods were underestimated by 30-46%. In conclusion, participants tended to underestimate the reference portion size for a range of food and beverages, especially single unit foods and foods of low energy density and, unexpectedly, overestimated the reference portion of high energy density items. There is a need for better consumer education of appropriate portion sizes to aid adherence to a healthy diet.
NASA Astrophysics Data System (ADS)
Szücs, László; Glover, Simon
2013-07-01
Carbon monoxide (CO) and its isotopes are frequently used as a tracer of column density in studies of the dense interstellar medium. The most abundant CO isotope, 12CO, is usually optically thick in intermediate and high density regions and so provides only a lower limit for the column density. In these regions, less abundant isotopes are used, such as 13CO. To relate observations of 13CO to the 12CO column density, a constant 12CO/13CO isotopic ratio is often adopted. In this work, we examine the impact of two effects -- selective photodissociation of 13CO and chemical fractionation -- on the 12CO/13CO isotopic ratio, with the aid of numerical simulations. Our simulations follow the coupled chemical, thermal and dynamical evolution of isolated molecular clouds in several different environments. We post-process our simulation results with line radiative transfer and produce maps of the emergent 13CO emission. We compare emission maps produced assuming a constant isotopic ratio with ones produced using the results from a more self-consistent calculation, and also compare the column density maps derived from the emission maps. We find that at low and high column densities, the column density estimates that we obtain with the approximation of constant isotopic ratio agree well with those derived from the self-consistent model. At intermediate column densities, 10^12 cm^-2 < N(13CO)< 10^15 cm^-2, the approximate model under-predicts the column density by a factor of a few, but we show that we can correct for this, and hence obtain accurate column density estimates, via application of a simple correction factor.
Estimating abundance and density of Amur tigers along the Sino-Russian border.
Xiao, Wenhong; Feng, Limin; Mou, Pu; Miquelle, Dale G; Hebblewhite, Mark; Goldberg, Joshua F; Robinson, Hugh S; Zhao, Xiaodan; Zhou, Bo; Wang, Tianming; Ge, Jianping
2016-07-01
As an apex predator the Amur tiger (Panthera tigris altaica) could play a pivotal role in maintaining the integrity of forest ecosystems in Northeast Asia. Due to habitat loss and harvest over the past century, tigers rapidly declined in China and are now restricted to the Russian Far East and bordering habitat in nearby China. To facilitate restoration of the tiger in its historical range, reliable estimates of population size are essential to assess effectiveness of conservation interventions. Here we used camera trap data collected in Hunchun National Nature Reserve from April to June 2013 and 2014 to estimate tiger density and abundance using both maximum likelihood and Bayesian spatially explicit capture-recapture (SECR) methods. A minimum of 8 individuals were detected in both sample periods and the documentation of marking behavior and reproduction suggests the presence of a resident population. Using Bayesian SECR modeling within the 11 400 km(2) state space, density estimates were 0.33 and 0.40 individuals/100 km(2) in 2013 and 2014, respectively, corresponding to an estimated abundance of 38 and 45 animals for this transboundary Sino-Russian population. In a maximum likelihood framework, we estimated densities of 0.30 and 0.24 individuals/100 km(2) corresponding to abundances of 34 and 27, in 2013 and 2014, respectively. These density estimates are comparable to other published estimates for resident Amur tiger populations in the Russian Far East. This study reveals promising signs of tiger recovery in Northeast China, and demonstrates the importance of connectivity between the Russian and Chinese populations for recovering tigers in Northeast China.
Estimation of nighttime dip-equatorial E-region current density using measurements and models
NASA Astrophysics Data System (ADS)
Pandey, Kuldeep; Sekar, R.; Anandarao, B. G.; Gupta, S. P.; Chakrabarty, D.
2016-08-01
The existence of the possible ionospheric current during nighttime over low-equatorial latitudes is one of the unresolved issues in ionospheric physics and geomagnetism. A detailed investigation is carried out to estimate the same over Indian longitudes using in situ measurements from Thumba (8.5 ° N, 76.9 ° E), empirical plasma drift model (Fejer et al., 2008) and equatorial electrojet model developed by Anandarao (1976). This investigation reveals that the nighttime E-region current densities vary from ∼0.3 to ∼0.7 A/km2 during pre-midnight to early morning hours on geomagnetically quiet conditions. The nighttime current densities over the dip equator are estimated using three different methods (discussed in methodology section) and are found to be consistent with one another within the uncertainty limits. Altitude structures in the E-region current densities are also noticed which are shown to be associated with altitudinal structures in the electron densities. The horizontal component of the magnetic field induced by these nighttime ionospheric currents is estimated to vary between ∼2 and ∼6 nT during geomagnetically quiet periods. This investigation confirms the existence of nighttime ionospheric current and opens up a possibility of estimating base line value for geomagnetic field fluctuations as observed by ground-based magnetometer.
2013-09-30
Classification, Localization and Density Estimation of Marine Mammals Dr Douglas Gillespie Sea Mammal Research Unit, Scottish Oceans Institute...NUMBER 5f. WORK UNIT NUMBER 7. PERFORMING ORGANIZATION NAME(S) AND ADDRESS(ES) University of St Andrews, Scottish Oceans Institute,Sea Mammal
NASA Technical Reports Server (NTRS)
Garber, Donald P.
1993-01-01
A probability density function for the variability of ensemble averaged spectral estimates from helicopter acoustic signals in Gaussian background noise was evaluated. Numerical methods for calculating the density function and for determining confidence limits were explored. Density functions were predicted for both synthesized and experimental data and compared with observed spectral estimate variability.
Robel, G.L.; Fisher, W.L.
1999-01-01
Production of and consumption by hatchery-reared tingerling (age-0) smallmouth bass Micropterus dolomieu at various simulated stocking densities were estimated with a bioenergetics model. Fish growth rates and pond water temperatures during the 1996 growing season at two hatcheries in Oklahoma were used in the model. Fish growth and simulated consumption and production differed greatly between the two hatcheries, probably because of differences in pond fertilization and mortality rates. Our results suggest that appropriate stocking density depends largely on prey availability as affected by pond fertilization and on fingerling mortality rates. The bioenergetics model provided a useful tool for estimating production at various stocking density rates. However, verification of physiological parameters for age-0 fish of hatchery-reared species is needed.
Population density estimated from locations of individuals on a passive detector array
Efford, Murray G.; Dawson, Deanna K.; Borchers, David L.
2009-01-01
The density of a closed population of animals occupying stable home ranges may be estimated from detections of individuals on an array of detectors, using newly developed methods for spatially explicit capture–recapture. Likelihood-based methods provide estimates for data from multi-catch traps or from devices that record presence without restricting animal movement ("proximity" detectors such as camera traps and hair snags). As originally proposed, these methods require multiple sampling intervals. We show that equally precise and unbiased estimates may be obtained from a single sampling interval, using only the spatial pattern of detections. This considerably extends the range of possible applications, and we illustrate the potential by estimating density from simulated detections of bird vocalizations on a microphone array. Acoustic detection can be defined as occurring when received signal strength exceeds a threshold. We suggest detection models for binary acoustic data, and for continuous data comprising measurements of all signals above the threshold. While binary data are often sufficient for density estimation, modeling signal strength improves precision when the microphone array is small.
Coronal loop density profile estimated by forward modelling of EUV intensity
NASA Astrophysics Data System (ADS)
Pascoe, D. J.; Goddard, C. R.; Anfinogentov, S.; Nakariakov, V. M.
2017-04-01
Aims: The transverse density structuring of coronal loops was recently calculated for the first time using the general damping profile for kink oscillations. This seismological method assumes a density profile with a linear transition region. We consider to what extent this density profile accounts for the observed intensity profile of the loop, and how the transverse intensity profile may be used to complement the seismological technique. Methods: We use isothermal and optically transparent approximations for which the intensity of extreme ultraviolet (EUV) emission is proportional to the square of the plasma density integrated along the line of sight. We consider four different models for the transverse density profile; the generalised Epstein profile, the step function, the linear transition region profile, and a Gaussian profile. The effect of the point spread function is included and Bayesian analysis is used for comparison of the models. Results: The two profiles with finite transitions are found to be preferable to the step function profile, which supports the interpretation of kink mode damping as being due to mode coupling. The estimate of the transition layer width using forward modelling is consistent with the seismological estimate. Conclusions: For wide loops, that is those observed with sufficiently high spatial resolution, this method can provide an independent estimate of density profile parameters for comparison with seismological estimates. In the ill-posed case of only one of the Gaussian or exponential damping regimes being observed, it may provide additional information to allow a seismological inversion to be performed. Alternatively, it may be used to obtain structuring information for loops that do not oscillate.
Density estimation of small-mammal populations using a trapping web and distance sampling methods
Anderson, David R.; Burnham, Kenneth P.; White, Gary C.; Otis, David L.
1983-01-01
Distance sampling methodology is adapted to enable animal density (number per unit of area) to be estimated from capture-recapture and removal data. A trapping web design provides the link between capture data and distance sampling theory. The estimator of density is D = Mt+1f(0), where Mt+1 is the number of individuals captured and f(0) is computed from the Mt+1 distances from the web center to the traps in which those individuals were first captured. It is possible to check qualitatively the critical assumption on which the web design and the estimator are based. This is a conceptual paper outlining a new methodology, not a definitive investigation of the best specific way to implement this method. Several alternative sampling and analysis methods are possible within the general framework of distance sampling theory; a few alternatives are discussed and an example is given.
Estimations of population density for selected periods between the Neolithic and AD 1800.
Zimmermann, Andreas; Hilpert, Johanna; Wendt, Karl Peter
2009-04-01
Abstract We describe a combination of methods applied to obtain reliable estimations of population density using archaeological data. The combination is based on a hierarchical model of scale levels. The necessary data and methods used to obtain the results are chosen so as to define transfer functions from one scale level to another. We apply our method to data sets from western Germany that cover early Neolithic, Iron Age, Roman, and Merovingian times as well as historical data from AD 1800. Error margins and natural and historical variability are discussed. Our results for nonstate societies are always lower than conventional estimations compiled from the literature, and we discuss the reasons for this finding. At the end, we compare the calculated local and global population densities with other estimations from different parts of the world.
Wen, Xiaotong; Rangarajan, Govindan; Ding, Mingzhou
2013-08-28
Granger causality is increasingly being applied to multi-electrode neurophysiological and functional imaging data to characterize directional interactions between neurons and brain regions. For a multivariate dataset, one might be interested in different subsets of the recorded neurons or brain regions. According to the current estimation framework, for each subset, one conducts a separate autoregressive model fitting process, introducing the potential for unwanted variability and uncertainty. In this paper, we propose a multivariate framework for estimating Granger causality. It is based on spectral density matrix factorization and offers the advantage that the estimation of such a matrix needs to be done only once for the entire multivariate dataset. For any subset of recorded data, Granger causality can be calculated through factorizing the appropriate submatrix of the overall spectral density matrix.
Estimation of dislocation density from precession electron diffraction data using the Nye tensor.
Leff, A C; Weinberger, C R; Taheri, M L
2015-06-01
The Nye tensor offers a means to estimate the geometrically necessary dislocation density of a crystalline sample based on measurements of the orientation changes within individual crystal grains. In this paper, the Nye tensor theory is applied to precession electron diffraction automated crystallographic orientation mapping (PED-ACOM) data acquired using a transmission electron microscope (TEM). The resulting dislocation density values are mapped in order to visualize the dislocation structures present in a quantitative manner. These density maps are compared with other related methods of approximating local strain dependencies in dislocation-based microstructural transitions from orientation data. The effect of acquisition parameters on density measurements is examined. By decreasing the step size and spot size during data acquisition, an increasing fraction of the dislocation content becomes accessible. Finally, the method described herein is applied to the measurement of dislocation emission during in situ annealing of Cu in TEM in order to demonstrate the utility of the technique for characterizing microstructural dynamics.
Estimation of energy density of Li-S batteries with liquid and solid electrolytes
NASA Astrophysics Data System (ADS)
Li, Chunmei; Zhang, Heng; Otaegui, Laida; Singh, Gurpreet; Armand, Michel; Rodriguez-Martinez, Lide M.
2016-09-01
With the exponential growth of technology in mobile devices and the rapid expansion of electric vehicles into the market, it appears that the energy density of the state-of-the-art Li-ion batteries (LIBs) cannot satisfy the practical requirements. Sulfur has been one of the best cathode material choices due to its high charge storage (1675 mAh g-1), natural abundance and easy accessibility. In this paper, calculations are performed for different cell design parameters such as the active material loading, the amount/thickness of electrolyte, the sulfur utilization, etc. to predict the energy density of Li-S cells based on liquid, polymeric and ceramic electrolytes. It demonstrates that Li-S battery is most likely to be competitive in gravimetric energy density, but not volumetric energy density, with current technology, when comparing with LIBs. Furthermore, the cells with polymer and thin ceramic electrolytes show promising potential in terms of high gravimetric energy density, especially the cells with the polymer electrolyte. This estimation study of Li-S energy density can be used as a good guidance for controlling the key design parameters in order to get desirable energy density at cell-level.
Density estimation in a wolverine population using spatial capture-recapture models
Royle, J. Andrew; Magoun, Audrey J.; Gardner, Beth; Valkenbury, Patrick; Lowell, Richard E.; McKelvey, Kevin
2011-01-01
Classical closed-population capture-recapture models do not accommodate the spatial information inherent in encounter history data obtained from camera-trapping studies. As a result, individual heterogeneity in encounter probability is induced, and it is not possible to estimate density objectively because trap arrays do not have a well-defined sample area. We applied newly-developed, capture-recapture models that accommodate the spatial attribute inherent in capture-recapture data to a population of wolverines (Gulo gulo) in Southeast Alaska in 2008. We used camera-trapping data collected from 37 cameras in a 2,140-km2 area of forested and open habitats largely enclosed by ocean and glacial icefields. We detected 21 unique individuals 115 times. Wolverines exhibited a strong positive trap response, with an increased tendency to revisit previously visited traps. Under the trap-response model, we estimated wolverine density at 9.7 individuals/1,000-km2(95% Bayesian CI: 5.9-15.0). Our model provides a formal statistical framework for estimating density from wolverine camera-trapping studies that accounts for a behavioral response due to baited traps. Further, our model-based estimator does not have strict requirements about the spatial configuration of traps or length of trapping sessions, providing considerable operational flexibility in the development of field studies.
Joint estimation of crown of thorns (Acanthaster planci) densities on the Great Barrier Reef
Mellin, Camille; Pratchett, Morgan S.; Hoey, Jessica; Anthony, Kenneth R.N.; Cheal, Alistair J.; Miller, Ian; Sweatman, Hugh; Cowan, Zara L.; Taylor, Sascha; Moon, Steven; Fonnesbeck, Chris J.
2016-01-01
Crown-of-thorns starfish (CoTS; Acanthaster spp.) are an outbreaking pest among many Indo-Pacific coral reefs that cause substantial ecological and economic damage. Despite ongoing CoTS research, there remain critical gaps in observing CoTS populations and accurately estimating their numbers, greatly limiting understanding of the causes and sources of CoTS outbreaks. Here we address two of these gaps by (1) estimating the detectability of adult CoTS on typical underwater visual count (UVC) surveys using covariates and (2) inter-calibrating multiple data sources to estimate CoTS densities within the Cairns sector of the Great Barrier Reef (GBR). We find that, on average, CoTS detectability is high at 0.82 [0.77, 0.87] (median highest posterior density (HPD) and [95% uncertainty intervals]), with CoTS disc width having the greatest influence on detection. Integrating this information with coincident surveys from alternative sampling programs, we estimate CoTS densities in the Cairns sector of the GBR averaged 44 [41, 48] adults per hectare in 2014. PMID:27635314
RS-Forest: A Rapid Density Estimator for Streaming Anomaly Detection
Wu, Ke; Zhang, Kun; Fan, Wei; Edwards, Andrea; Yu, Philip S.
2015-01-01
Anomaly detection in streaming data is of high interest in numerous application domains. In this paper, we propose a novel one-class semi-supervised algorithm to detect anomalies in streaming data. Underlying the algorithm is a fast and accurate density estimator implemented by multiple fully randomized space trees (RS-Trees), named RS-Forest. The piecewise constant density estimate of each RS-tree is defined on the tree node into which an instance falls. Each incoming instance in a data stream is scored by the density estimates averaged over all trees in the forest. Two strategies, statistical attribute range estimation of high probability guarantee and dual node profiles for rapid model update, are seamlessly integrated into RS-Forest to systematically address the ever-evolving nature of data streams. We derive the theoretical upper bound for the proposed algorithm and analyze its asymptotic properties via bias-variance decomposition. Empirical comparisons to the state-of-the-art methods on multiple benchmark datasets demonstrate that the proposed method features high detection rate, fast response, and insensitivity to most of the parameter settings. Algorithm implementations and datasets are available upon request. PMID:25685112
Burke, TImothy P.; Kiedrowski, Brian C.; Martin, William R.; Brown, Forrest B.
2015-11-19
Kernel Density Estimators (KDEs) are a non-parametric density estimation technique that has recently been applied to Monte Carlo radiation transport simulations. Kernel density estimators are an alternative to histogram tallies for obtaining global solutions in Monte Carlo tallies. With KDEs, a single event, either a collision or particle track, can contribute to the score at multiple tally points with the uncertainty at those points being independent of the desired resolution of the solution. Thus, KDEs show potential for obtaining estimates of a global solution with reduced variance when compared to a histogram. Previously, KDEs have been applied to neutronics for one-group reactor physics problems and fixed source shielding applications. However, little work was done to obtain reaction rates using KDEs. This paper introduces a new form of the MFP KDE that is capable of handling general geometries. Furthermore, extending the MFP KDE to 2-D problems in continuous energy introduces inaccuracies to the solution. An ad-hoc solution to these inaccuracies is introduced that produces errors smaller than 4% at material interfaces.
Joint estimation of crown of thorns (Acanthaster planci) densities on the Great Barrier Reef.
MacNeil, M Aaron; Mellin, Camille; Pratchett, Morgan S; Hoey, Jessica; Anthony, Kenneth R N; Cheal, Alistair J; Miller, Ian; Sweatman, Hugh; Cowan, Zara L; Taylor, Sascha; Moon, Steven; Fonnesbeck, Chris J
2016-01-01
Crown-of-thorns starfish (CoTS; Acanthaster spp.) are an outbreaking pest among many Indo-Pacific coral reefs that cause substantial ecological and economic damage. Despite ongoing CoTS research, there remain critical gaps in observing CoTS populations and accurately estimating their numbers, greatly limiting understanding of the causes and sources of CoTS outbreaks. Here we address two of these gaps by (1) estimating the detectability of adult CoTS on typical underwater visual count (UVC) surveys using covariates and (2) inter-calibrating multiple data sources to estimate CoTS densities within the Cairns sector of the Great Barrier Reef (GBR). We find that, on average, CoTS detectability is high at 0.82 [0.77, 0.87] (median highest posterior density (HPD) and [95% uncertainty intervals]), with CoTS disc width having the greatest influence on detection. Integrating this information with coincident surveys from alternative sampling programs, we estimate CoTS densities in the Cairns sector of the GBR averaged 44 [41, 48] adults per hectare in 2014.
Rajwade, Ajit; Banerjee, Arunava; Rangarajan, Anand
2009-03-01
We present a new, geometric approach for determining the probability density of the intensity values in an image. We drop the notion of an image as a set of discrete pixels, and assume a piecewise-continuous representation. The probability density can then be regarded as being proportional to the area between two nearby isocontours of the image surface. Our paper extends this idea to joint densities of image pairs. We demonstrate the application of our method to affine registration between two or more images using information theoretic measures such as mutual information. We show cases where our method outperforms existing methods such as simple histograms, histograms with partial volume interpolation, Parzen windows, etc. under fine intensity quantization for affine image registration under significant image noise. Furthermore, we demonstrate results on simultaneous registration of multiple images, as well as for pairs of volume datasets, and show some theoretical properties of our density estimator. Our approach requires the selection of only an image interpolant. The method neither requires any kind of kernel functions (as in Parzen windows) which are unrelated to the structure of the image in itself, nor does it rely on any form of sampling for density estimation.
Rajwade, Ajit; Banerjee, Arunava; Rangarajan, Anand
2010-01-01
We present a new geometric approach for determining the probability density of the intensity values in an image. We drop the notion of an image as a set of discrete pixels and assume a piecewise-continuous representation. The probability density can then be regarded as being proportional to the area between two nearby isocontours of the image surface. Our paper extends this idea to joint densities of image pairs. We demonstrate the application of our method to affine registration between two or more images using information-theoretic measures such as mutual information. We show cases where our method outperforms existing methods such as simple histograms, histograms with partial volume interpolation, Parzen windows, etc., under fine intensity quantization for affine image registration under significant image noise. Furthermore, we demonstrate results on simultaneous registration of multiple images, as well as for pairs of volume data sets, and show some theoretical properties of our density estimator. Our approach requires the selection of only an image interpolant. The method neither requires any kind of kernel functions (as in Parzen windows), which are unrelated to the structure of the image in itself, nor does it rely on any form of sampling for density estimation. PMID:19147876
Estimation and Modeling of Enceladus Plume Jet Density Using Reaction Wheel Control Data
NASA Technical Reports Server (NTRS)
Lee, Allan Y.; Wang, Eric K.; Pilinski, Emily B.; Macala, Glenn A.; Feldman, Antonette
2010-01-01
The Cassini spacecraft was launched on October 15, 1997 by a Titan 4B launch vehicle. After an interplanetary cruise of almost seven years, it arrived at Saturn on June 30, 2004. In 2005, Cassini completed three flybys of Enceladus, a small, icy satellite of Saturn. Observations made during these flybys confirmed the existence of a water vapor plume in the south polar region of Enceladus. Five additional low-altitude flybys of Enceladus were successfully executed in 2008-9 to better characterize these watery plumes. The first of these flybys was the 50-km Enceladus-3 (E3) flyby executed on March 12, 2008. During the E3 flyby, the spacecraft attitude was controlled by a set of three reaction wheels. During the flyby, multiple plume jets imparted disturbance torque on the spacecraft resulting in small but visible attitude control errors. Using the known and unique transfer function between the disturbance torque and the attitude control error, the collected attitude control error telemetry could be used to estimate the disturbance torque. The effectiveness of this methodology is confirmed using the E3 telemetry data. Given good estimates of spacecraft's projected area, center of pressure location, and spacecraft velocity, the time history of the Enceladus plume density is reconstructed accordingly. The 1 sigma uncertainty of the estimated density is 7.7%. Next, we modeled the density due to each plume jet as a function of both the radial and angular distances of the spacecraft from the plume source. We also conjecture that the total plume density experienced by the spacecraft is the sum of the component plume densities. By comparing the time history of the reconstructed E3 plume density with that predicted by the plume model, values of the plume model parameters are determined. Results obtained are compared with those determined by other Cassini science instruments.
Estimation and Modeling of Enceladus Plume Jet Density Using Reaction Wheel Control Data
NASA Technical Reports Server (NTRS)
Lee, Allan Y.; Wang, Eric K.; Pilinski, Emily B.; Macala, Glenn A.; Feldman, Antonette
2010-01-01
The Cassini spacecraft was launched on October 15, 1997 by a Titan 4B launch vehicle. After an interplanetary cruise of almost seven years, it arrived at Saturn on June 30, 2004. In 2005, Cassini completed three flybys of Enceladus, a small, icy satellite of Saturn. Observations made during these flybys confirmed the existence of a water vapor plume in the south polar region of Enceladus. Five additional low-altitude flybys of Enceladus were successfully executed in 2008-9 to better characterize these watery plumes. The first of these flybys was the 50-km Enceladus-3 (E3) flyby executed on March 12, 2008. During the E3 flyby, the spacecraft attitude was controlled by a set of three reaction wheels. During the flyby, multiple plume jets imparted disturbance torque on the spacecraft resulting in small but visible attitude control errors. Using the known and unique transfer function between the disturbance torque and the attitude control error, the collected attitude control error telemetry could be used to estimate the disturbance torque. The effectiveness of this methodology is confirmed using the E3 telemetry data. Given good estimates of spacecraft's projected area, center of pressure location, and spacecraft velocity, the time history of the Enceladus plume density is reconstructed accordingly. The 1-sigma uncertainty of the estimated density is 7.7%. Next, we modeled the density due to each plume jet as a function of both the radial and angular distances of the spacecraft from the plume source. We also conjecture that the total plume density experienced by the spacecraft is the sum of the component plume densities. By comparing the time history of the reconstructed E3 plume density with that predicted by the plume model, values of the plume model parameters are determined. Results obtained are compared with those determined by other Cassini science instruments.
Limit Distribution Theory for Maximum Likelihood Estimation of a Log-Concave Density.
Balabdaoui, Fadoua; Rufibach, Kaspar; Wellner, Jon A
2009-06-01
We find limiting distributions of the nonparametric maximum likelihood estimator (MLE) of a log-concave density, i.e. a density of the form f(0) = exp varphi(0) where varphi(0) is a concave function on R. Existence, form, characterizations and uniform rates of convergence of the MLE are given by Rufibach (2006) and Dümbgen and Rufibach (2007). The characterization of the log-concave MLE in terms of distribution functions is the same (up to sign) as the characterization of the least squares estimator of a convex density on [0, infinity) as studied by Groeneboom, Jongbloed and Wellner (2001b). We use this connection to show that the limiting distributions of the MLE and its derivative are, under comparable smoothness assumptions, the same (up to sign) as in the convex density estimation problem. In particular, changing the smoothness assumptions of Groeneboom, Jongbloed and Wellner (2001b) slightly by allowing some higher derivatives to vanish at the point of interest, we find that the pointwise limiting distributions depend on the second and third derivatives at 0 of H(k), the "lower invelope" of an integrated Brownian motion process minus a drift term depending on the number of vanishing derivatives of varphi(0) = log f(0) at the point of interest. We also establish the limiting distribution of the resulting estimator of the mode M(f(0)) and establish a new local asymptotic minimax lower bound which shows the optimality of our mode estimator in terms of both rate of convergence and dependence of constants on population values.
Eskelson, Bianca N.I.; Hagar, Joan; Temesgen, Hailemariam
2012-01-01
Snags (standing dead trees) are an essential structural component of forests. Because wildlife use of snags depends on size and decay stage, snag density estimation without any information about snag quality attributes is of little value for wildlife management decision makers. Little work has been done to develop models that allow multivariate estimation of snag density by snag quality class. Using climate, topography, Landsat TM data, stand age and forest type collected for 2356 forested Forest Inventory and Analysis plots in western Washington and western Oregon, we evaluated two multivariate techniques for their abilities to estimate density of snags by three decay classes. The density of live trees and snags in three decay classes (D1: recently dead, little decay; D2: decay, without top, some branches and bark missing; D3: extensive decay, missing bark and most branches) with diameter at breast height (DBH) ≥ 12.7 cm was estimated using a nonparametric random forest nearest neighbor imputation technique (RF) and a parametric two-stage model (QPORD), for which the number of trees per hectare was estimated with a Quasipoisson model in the first stage and the probability of belonging to a tree status class (live, D1, D2, D3) was estimated with an ordinal regression model in the second stage. The presence of large snags with DBH ≥ 50 cm was predicted using a logistic regression and RF imputation. Because of the more homogenous conditions on private forest lands, snag density by decay class was predicted with higher accuracies on private forest lands than on public lands, while presence of large snags was more accurately predicted on public lands, owing to the higher prevalence of large snags on public lands. RF outperformed the QPORD model in terms of percent accurate predictions, while QPORD provided smaller root mean square errors in predicting snag density by decay class. The logistic regression model achieved more accurate presence/absence classification
Singular value decomposition and density estimation for filtering and analysis of gene expression
Rechtsteiner, A.; Gottardo, R.; Rocha, L. M.; Wall, M. E.
2003-01-01
We present three algorithms for gene expression analysis. Algorithm 1, known as serial correlation test, is used for filtering out noisy gene expression profiles. Algorithm 2 and 3 project the gene expression profiles into 2-dimensional expression subspaces ident ifiecl by Singular Value Decomposition. Density estimates a e used to determine expression profiles that have a high correlation with the subspace and low levels of noise. High density regions in the projection, clusters of co-expressed genes, are identified. We illustrate the algorithms by application to the yeast cell-cycle data by Cho et.al. and comparison of the results.
Nearest neighbor density ratio estimation for large-scale applications in astronomy
NASA Astrophysics Data System (ADS)
Kremer, J.; Gieseke, F.; Steenstrup Pedersen, K.; Igel, C.
2015-09-01
In astronomical applications of machine learning, the distribution of objects used for building a model is often different from the distribution of the objects the model is later applied to. This is known as sample selection bias, which is a major challenge for statistical inference as one can no longer assume that the labeled training data are representative. To address this issue, one can re-weight the labeled training patterns to match the distribution of unlabeled data that are available already in the training phase. There are many examples in practice where this strategy yielded good results, but estimating the weights reliably from a finite sample is challenging. We consider an efficient nearest neighbor density ratio estimator that can exploit large samples to increase the accuracy of the weight estimates. To solve the problem of choosing the right neighborhood size, we propose to use cross-validation on a model selection criterion that is unbiased under covariate shift. The resulting algorithm is our method of choice for density ratio estimation when the feature space dimensionality is small and sample sizes are large. The approach is simple and, because of the model selection, robust. We empirically find that it is on a par with established kernel-based methods on relatively small regression benchmark datasets. However, when applied to large-scale photometric redshift estimation, our approach outperforms the state-of-the-art.
NASA Astrophysics Data System (ADS)
Bignami, Christian; Ruch, Joel; Chini, Marco; Neri, Marco; Buongiorno, Maria Fabrizia; Hidayati, Sri; Sayudi, Dewi Sri; Surono
2013-07-01
Pyroclastic density current deposits remobilized by water during periods of heavy rainfall trigger lahars (volcanic mudflows) that affect inhabited areas at considerable distance from volcanoes, even years after an eruption. Here we present an innovative approach to detect and estimate the thickness and volume of pyroclastic density current (PDC) deposits as well as erosional versus depositional environments. We use SAR interferometry to compare an airborne digital surface model (DSM) acquired in 2004 to a post eruption 2010 DSM created using COSMO-SkyMed satellite data to estimate the volume of 2010 Merapi eruption PDC deposits along the Gendol river (Kali Gendol, KG). Results show PDC thicknesses of up to 75 m in canyons and a volume of about 40 × 106 m3, mainly along KG, and at distances of up to 16 km from the volcano summit. This volume estimate corresponds mainly to the 2010 pyroclastic deposits along the KG - material that is potentially available to produce lahars. Our volume estimate is approximately twice that estimated by field studies, a difference we consider acceptable given the uncertainties involved in both satellite- and field-based methods. Our technique can be used to rapidly evaluate volumes of PDC deposits at active volcanoes, in remote settings and where continuous activity may prevent field observations.
Somershoe, S.G.; Twedt, D.J.; Reid, B.
2006-01-01
We combined Breeding Bird Survey point count protocol and distance sampling to survey spring migrant and breeding birds in Vicksburg National Military Park on 33 days between March and June of 2003 and 2004. For 26 of 106 detected species, we used program DISTANCE to estimate detection probabilities and densities from 660 3-min point counts in which detections were recorded within four distance annuli. For most species, estimates of detection probability, and thereby density estimates, were improved through incorporation of the proportion of forest cover at point count locations as a covariate. Our results suggest Breeding Bird Surveys would benefit from the use of distance sampling and a quantitative characterization of habitat at point count locations. During spring migration, we estimated that the most common migrant species accounted for a population of 5000-9000 birds in Vicksburg National Military Park (636 ha). Species with average populations of 300 individuals during migration were: Blue-gray Gnatcatcher (Polioptila caerulea), Cedar Waxwing (Bombycilla cedrorum), White-eyed Vireo (Vireo griseus), Indigo Bunting (Passerina cyanea), and Ruby-crowned Kinglet (Regulus calendula). Of 56 species that bred in Vicksburg National Military Park, we estimated that the most common 18 species accounted for 8150 individuals. The six most abundant breeding species, Blue-gray Gnatcatcher, White-eyed Vireo, Summer Tanager (Piranga rubra), Northern Cardinal (Cardinalis cardinalis), Carolina Wren (Thryothorus ludovicianus), and Brown-headed Cowbird (Molothrus ater), accounted for 5800 individuals.
Seshadrinath, Jeevanand; Singh, Bhim; Panigrahi, Bijaya Ketan
2014-05-01
Interturn fault diagnosis of induction machines has been discussed using various neural network-based techniques. The main challenge in such methods is the computational complexity due to the huge size of the network, and in pruning a large number of parameters. In this paper, a nearly shift insensitive complex wavelet-based probabilistic neural network (PNN) model, which has only a single parameter to be optimized, is proposed for interturn fault detection. The algorithm constitutes two parts and runs in an iterative way. In the first part, the PNN structure determination has been discussed, which finds out the optimum size of the network using an orthogonal least squares regression algorithm, thereby reducing its size. In the second part, a Bayesian classifier fusion has been recommended as an effective solution for deciding the machine condition. The testing accuracy, sensitivity, and specificity values are highest for the product rule-based fusion scheme, which is obtained under load, supply, and frequency variations. The point of overfitting of PNN is determined, which reduces the size, without compromising the performance. Moreover, a comparative evaluation with traditional discrete wavelet transform-based method is demonstrated for performance evaluation and to appreciate the obtained results.
A new approach to pre-processing digital image for wavelet-based watermark
NASA Astrophysics Data System (ADS)
Agreste, Santa; Andaloro, Guido
2008-11-01
The growth of the Internet has increased the phenomenon of digital piracy, in multimedia objects, like software, image, video, audio and text. Therefore it is strategic to individualize and to develop methods and numerical algorithms, which are stable and have low computational cost, that will allow us to find a solution to these problems. We describe a digital watermarking algorithm for color image protection and authenticity: robust, not blind, and wavelet-based. The use of Discrete Wavelet Transform is motivated by good time-frequency features and a good match with Human Visual System directives. These two combined elements are important for building an invisible and robust watermark. Moreover our algorithm can work with any image, thanks to the step of pre-processing of the image that includes resize techniques that adapt to the size of the original image for Wavelet transform. The watermark signal is calculated in correlation with the image features and statistic properties. In the detection step we apply a re-synchronization between the original and watermarked image according to the Neyman-Pearson statistic criterion. Experimentation on a large set of different images has been shown to be resistant against geometric, filtering, and StirMark attacks with a low rate of false alarm.
Niegowski, Maciej; Zivanovic, Miroslav
2016-03-01
We present a novel approach aimed at removing electrocardiogram (ECG) perturbation from single-channel surface electromyogram (EMG) recordings by means of unsupervised learning of wavelet-based intensity images. The general idea is to combine the suitability of certain wavelet decomposition bases which provide sparse electrocardiogram time-frequency representations, with the capacity of non-negative matrix factorization (NMF) for extracting patterns from images. In order to overcome convergence problems which often arise in NMF-related applications, we design a novel robust initialization strategy which ensures proper signal decomposition in a wide range of ECG contamination levels. Moreover, the method can be readily used because no a priori knowledge or parameter adjustment is needed. The proposed method was evaluated on real surface EMG signals against two state-of-the-art unsupervised learning algorithms and a singular spectrum analysis based method. The results, expressed in terms of high-to-low energy ratio, normalized median frequency, spectral power difference and normalized average rectified value, suggest that the proposed method enables better ECG-EMG separation quality than the reference methods.
Wavelet-based detection of abrupt changes in natural frequencies of time-variant systems
NASA Astrophysics Data System (ADS)
Dziedziech, K.; Staszewski, W. J.; Basu, B.; Uhl, T.
2015-12-01
Detection of abrupt changes in natural frequencies from vibration responses of time-variant systems is a challenging task due to the complex nature of physics involved. It is clear that the problem needs to be analysed in the combined time-frequency domain. The paper proposes an application of the input-output wavelet-based Frequency Response Function for this analysis. The major focus and challenge relate to ridge extraction of the above time-frequency characteristics. It is well known that classical ridge extraction procedures lead to ridges that are smooth. However, this property is not desired when abrupt changes in the dynamics are considered. The methods presented in the paper are illustrated using simulated and experimental multi-degree-of-freedom systems. The results are compared with the classical Frequency Response Function and with the output only analysis based on the wavelet auto-power response spectrum. The results show that the proposed method captures correctly the dynamics of the analysed time-variant systems.
Wavelet Based Method for Congestive Heart Failure Recognition by Three Confirmation Functions.
Daqrouq, K; Dobaie, A
2016-01-01
An investigation of the electrocardiogram (ECG) signals and arrhythmia characterization by wavelet energy is proposed. This study employs a wavelet based feature extraction method for congestive heart failure (CHF) obtained from the percentage energy (PE) of terminal wavelet packet transform (WPT) subsignals. In addition, the average framing percentage energy (AFE) technique is proposed, termed WAFE. A new classification method is introduced by three confirmation functions. The confirmation methods are based on three concepts: percentage root mean square difference error (PRD), logarithmic difference signal ratio (LDSR), and correlation coefficient (CC). The proposed method showed to be a potential effective discriminator in recognizing such clinical syndrome. ECG signals taken from MIT-BIH arrhythmia dataset and other databases are utilized to analyze different arrhythmias and normal ECGs. Several known methods were studied for comparison. The best recognition rate selection obtained was for WAFE. The recognition performance was accomplished as 92.60% accurate. The Receiver Operating Characteristic curve as a common tool for evaluating the diagnostic accuracy was illustrated, which indicated that the tests are reliable. The performance of the presented system was investigated in additive white Gaussian noise (AWGN) environment, where the recognition rate was 81.48% for 5 dB.
Wavelet-Based Visible and Infrared Image Fusion: A Comparative Study
Sappa, Angel D.; Carvajal, Juan A.; Aguilera, Cristhian A.; Oliveira, Miguel; Romero, Dennis; Vintimilla, Boris X.
2016-01-01
This paper evaluates different wavelet-based cross-spectral image fusion strategies adopted to merge visible and infrared images. The objective is to find the best setup independently of the evaluation metric used to measure the performance. Quantitative performance results are obtained with state of the art approaches together with adaptations proposed in the current work. The options evaluated in the current work result from the combination of different setups in the wavelet image decomposition stage together with different fusion strategies for the final merging stage that generates the resulting representation. Most of the approaches evaluate results according to the application for which they are intended for. Sometimes a human observer is selected to judge the quality of the obtained results. In the current work, quantitative values are considered in order to find correlations between setups and performance of obtained results; these correlations can be used to define a criteria for selecting the best fusion strategy for a given pair of cross-spectral images. The whole procedure is evaluated with a large set of correctly registered visible and infrared image pairs, including both Near InfraRed (NIR) and Long Wave InfraRed (LWIR). PMID:27294938
Wavelet-Based Visible and Infrared Image Fusion: A Comparative Study.
Sappa, Angel D; Carvajal, Juan A; Aguilera, Cristhian A; Oliveira, Miguel; Romero, Dennis; Vintimilla, Boris X
2016-06-10
This paper evaluates different wavelet-based cross-spectral image fusion strategies adopted to merge visible and infrared images. The objective is to find the best setup independently of the evaluation metric used to measure the performance. Quantitative performance results are obtained with state of the art approaches together with adaptations proposed in the current work. The options evaluated in the current work result from the combination of different setups in the wavelet image decomposition stage together with different fusion strategies for the final merging stage that generates the resulting representation. Most of the approaches evaluate results according to the application for which they are intended for. Sometimes a human observer is selected to judge the quality of the obtained results. In the current work, quantitative values are considered in order to find correlations between setups and performance of obtained results; these correlations can be used to define a criteria for selecting the best fusion strategy for a given pair of cross-spectral images. The whole procedure is evaluated with a large set of correctly registered visible and infrared image pairs, including both Near InfraRed (NIR) and Long Wave InfraRed (LWIR).
Wavelet Based Method for Congestive Heart Failure Recognition by Three Confirmation Functions
Daqrouq, K.; Dobaie, A.
2016-01-01
An investigation of the electrocardiogram (ECG) signals and arrhythmia characterization by wavelet energy is proposed. This study employs a wavelet based feature extraction method for congestive heart failure (CHF) obtained from the percentage energy (PE) of terminal wavelet packet transform (WPT) subsignals. In addition, the average framing percentage energy (AFE) technique is proposed, termed WAFE. A new classification method is introduced by three confirmation functions. The confirmation methods are based on three concepts: percentage root mean square difference error (PRD), logarithmic difference signal ratio (LDSR), and correlation coefficient (CC). The proposed method showed to be a potential effective discriminator in recognizing such clinical syndrome. ECG signals taken from MIT-BIH arrhythmia dataset and other databases are utilized to analyze different arrhythmias and normal ECGs. Several known methods were studied for comparison. The best recognition rate selection obtained was for WAFE. The recognition performance was accomplished as 92.60% accurate. The Receiver Operating Characteristic curve as a common tool for evaluating the diagnostic accuracy was illustrated, which indicated that the tests are reliable. The performance of the presented system was investigated in additive white Gaussian noise (AWGN) environment, where the recognition rate was 81.48% for 5 dB. PMID:26949412
The Analysis of Surface EMG Signals with the Wavelet-Based Correlation Dimension Method
Zhang, Yanyan; Wang, Jue
2014-01-01
Many attempts have been made to effectively improve a prosthetic system controlled by the classification of surface electromyographic (SEMG) signals. Recently, the development of methodologies to extract the effective features still remains a primary challenge. Previous studies have demonstrated that the SEMG signals have nonlinear characteristics. In this study, by combining the nonlinear time series analysis and the time-frequency domain methods, we proposed the wavelet-based correlation dimension method to extract the effective features of SEMG signals. The SEMG signals were firstly analyzed by the wavelet transform and the correlation dimension was calculated to obtain the features of the SEMG signals. Then, these features were used as the input vectors of a Gustafson-Kessel clustering classifier to discriminate four types of forearm movements. Our results showed that there are four separate clusters corresponding to different forearm movements at the third resolution level and the resulting classification accuracy was 100%, when two channels of SEMG signals were used. This indicates that the proposed approach can provide important insight into the nonlinear characteristics and the time-frequency domain features of SEMG signals and is suitable for classifying different types of forearm movements. By comparing with other existing methods, the proposed method exhibited more robustness and higher classification accuracy. PMID:24868240
Fast Wavelet Based Functional Models for Transcriptome Analysis with Tiling Arrays
Clement, Lieven; De Beuf, Kristof; Thas, Olivier; Vuylsteke, Marnik; Irizarry, Rafael A.; Crainiceanu, Ciprian M.
2013-01-01
For a better understanding of the biology of an organism, a complete description is needed of all regions of the genome that are actively transcribed. Tiling arrays are used for this purpose. They allow for the discovery of novel transcripts and the assessment of differential expression between two or more experimental conditions such as genotype, treatment, tissue, etc. In tiling array literature, many efforts are devoted to transcript discovery, whereas more recent developments also focus on differential expression. To our knowledge, however, no methods for tiling arrays have been described that can simultaneously assess transcript discovery and identify differentially expressed transcripts. In this paper, we adopt wavelet based functional models to the context of tiling arrays. The high dimensionality of the data triggered us to avoid inference based on Bayesian MCMC methods. Instead, we introduce a fast empirical Bayes method that provides adaptive regularization of the functional effects. A simulation study and a case study illustrate that our approach is well suited for the simultaneous assessment of transcript discovery and differential expression in tiling array studies, and that it outperforms methods that accomplish only one of these tasks. PMID:22499683
Optimal sensor placement for time-domain identification using a wavelet-based genetic algorithm
NASA Astrophysics Data System (ADS)
Mahdavi, Seyed Hossein; Razak, Hashim Abdul
2016-06-01
This paper presents a wavelet-based genetic algorithm strategy for optimal sensor placement (OSP) effective for time-domain structural identification. Initially, the GA-based fitness evaluation is significantly improved by using adaptive wavelet functions. Later, a multi-species decimal GA coding system is modified to be suitable for an efficient search around the local optima. In this regard, a local operation of mutation is introduced in addition with regeneration and reintroduction operators. It is concluded that different characteristics of applied force influence the features of structural responses, and therefore the accuracy of time-domain structural identification is directly affected. Thus, the reliable OSP strategy prior to the time-domain identification will be achieved by those methods dealing with minimizing the distance of simulated responses for the entire system and condensed system considering the force effects. The numerical and experimental verification on the effectiveness of the proposed strategy demonstrates the considerably high computational performance of the proposed OSP strategy, in terms of computational cost and the accuracy of identification. It is deduced that the robustness of the proposed OSP algorithm lies in the precise and fast fitness evaluation at larger sampling rates which result in the optimum evaluation of the GA-based exploration and exploitation phases towards the global optimum solution.
Gerasimova, Evgeniya; Audit, Benjamin; Roux, Stephane G.; Khalil, André; Gileva, Olga; Argoul, Françoise; Naimark, Oleg; Arneodo, Alain
2014-01-01
Breast cancer is the most common type of cancer among women and despite recent advances in the medical field, there are still some inherent limitations in the currently used screening techniques. The radiological interpretation of screening X-ray mammograms often leads to over-diagnosis and, as a consequence, to unnecessary traumatic and painful biopsies. Here we propose a computer-aided multifractal analysis of dynamic infrared (IR) imaging as an efficient method for identifying women with risk of breast cancer. Using a wavelet-based multi-scale method to analyze the temporal fluctuations of breast skin temperature collected from a panel of patients with diagnosed breast cancer and some female volunteers with healthy breasts, we show that the multifractal complexity of temperature fluctuations observed in healthy breasts is lost in mammary glands with malignant tumor. Besides potential clinical impact, these results open new perspectives in the investigation of physiological changes that may precede anatomical alterations in breast cancer development. PMID:24860510
Ibaida, Ayman; Khalil, Ibrahim
2013-12-01
With the growing number of aging population and a significant portion of that suffering from cardiac diseases, it is conceivable that remote ECG patient monitoring systems are expected to be widely used as point-of-care (PoC) applications in hospitals around the world. Therefore, huge amount of ECG signal collected by body sensor networks from remote patients at homes will be transmitted along with other physiological readings such as blood pressure, temperature, glucose level, etc., and diagnosed by those remote patient monitoring systems. It is utterly important that patient confidentiality is protected while data are being transmitted over the public network as well as when they are stored in hospital servers used by remote monitoring systems. In this paper, a wavelet-based steganography technique has been introduced which combines encryption and scrambling technique to protect patient confidential data. The proposed method allows ECG signal to hide its corresponding patient confidential data and other physiological information thus guaranteeing the integration between ECG and the rest. To evaluate the effectiveness of the proposed technique on the ECG signal, two distortion measurement metrics have been used: the percentage residual difference and the wavelet weighted PRD. It is found that the proposed technique provides high-security protection for patients data with low (less than 1%) distortion and ECG data remain diagnosable after watermarking (i.e., hiding patient confidential data) and as well as after watermarks (i.e., hidden data) are removed from the watermarked data.
NASA Astrophysics Data System (ADS)
Jia, Xiaoliang; An, Haizhong; Sun, Xiaoqi; Huang, Xuan; Gao, Xiangyun
2016-04-01
The globalization and regionalization of crude oil trade inevitably give rise to the difference of crude oil prices. The understanding of the pattern of the crude oil prices' mutual propagation is essential for analyzing the development of global oil trade. Previous research has focused mainly on the fuzzy long- or short-term one-to-one propagation of bivariate oil prices, generally ignoring various patterns of periodical multivariate propagation. This study presents a wavelet-based network approach to help uncover the multipath propagation of multivariable crude oil prices in a joint time-frequency period. The weekly oil spot prices of the OPEC member states from June 1999 to March 2011 are adopted as the sample data. First, we used wavelet analysis to find different subseries based on an optimal decomposing scale to describe the periodical feature of the original oil price time series. Second, a complex network model was constructed based on an optimal threshold selection to describe the structural feature of multivariable oil prices. Third, Bayesian network analysis (BNA) was conducted to find the probability causal relationship based on periodical structural features to describe the various patterns of periodical multivariable propagation. Finally, the significance of the leading and intermediary oil prices is discussed. These findings are beneficial for the implementation of periodical target-oriented pricing policies and investment strategies.
Mean square error approximation for wavelet-based semiregular mesh compression.
Payan, Frédéric; Antonini, Marc
2006-01-01
The objective of this paper is to propose an efficient model-based bit allocation process optimizing the performances of a wavelet coder for semiregular meshes. More precisely, this process should compute the best quantizers for the wavelet coefficient subbands that minimize the reconstructed mean square error for one specific target bitrate. In order to design a fast and low complex allocation process, we propose an approximation of the reconstructed mean square error relative to the coding of semiregular mesh geometry. This error is expressed directly from the quantization errors of each coefficient subband. For that purpose, we have to take into account the influence of the wavelet filters on the quantized coefficients. Furthermore, we propose a specific approximation for wavelet transforms based on lifting schemes. Experimentally, we show that, in comparison with a "naive" approximation (depending on the subband levels), using the proposed approximation as distortion criterion during the model-based allocation process improves the performances of a wavelet-based coder for any model, any bitrate, and any lifting scheme.
The analysis of surface EMG signals with the wavelet-based correlation dimension method.
Wang, Gang; Zhang, Yanyan; Wang, Jue
2014-01-01
Many attempts have been made to effectively improve a prosthetic system controlled by the classification of surface electromyographic (SEMG) signals. Recently, the development of methodologies to extract the effective features still remains a primary challenge. Previous studies have demonstrated that the SEMG signals have nonlinear characteristics. In this study, by combining the nonlinear time series analysis and the time-frequency domain methods, we proposed the wavelet-based correlation dimension method to extract the effective features of SEMG signals. The SEMG signals were firstly analyzed by the wavelet transform and the correlation dimension was calculated to obtain the features of the SEMG signals. Then, these features were used as the input vectors of a Gustafson-Kessel clustering classifier to discriminate four types of forearm movements. Our results showed that there are four separate clusters corresponding to different forearm movements at the third resolution level and the resulting classification accuracy was 100%, when two channels of SEMG signals were used. This indicates that the proposed approach can provide important insight into the nonlinear characteristics and the time-frequency domain features of SEMG signals and is suitable for classifying different types of forearm movements. By comparing with other existing methods, the proposed method exhibited more robustness and higher classification accuracy.
Spatially adaptive bases in wavelet-based coding of semi-regular meshes
NASA Astrophysics Data System (ADS)
Denis, Leon; Florea, Ruxandra; Munteanu, Adrian; Schelkens, Peter
2010-05-01
In this paper we present a wavelet-based coding approach for semi-regular meshes, which spatially adapts the employed wavelet basis in the wavelet transformation of the mesh. The spatially-adaptive nature of the transform requires additional information to be stored in the bit-stream in order to allow the reconstruction of the transformed mesh at the decoder side. In order to limit this overhead, the mesh is first segmented into regions of approximately equal size. For each spatial region, a predictor is selected in a rate-distortion optimal manner by using a Lagrangian rate-distortion optimization technique. When compared against the classical wavelet transform employing the butterfly subdivision filter, experiments reveal that the proposed spatially-adaptive wavelet transform significantly decreases the energy of the wavelet coefficients for all subbands. Preliminary results show also that employing the proposed transform for the lowest-resolution subband systematically yields improved compression performance at low-to-medium bit-rates. For the Venus and Rabbit test models the compression improvements add up to 1.47 dB and 0.95 dB, respectively.
Wavelet-based processing of neuronal spike trains prior to discriminant analysis.
Laubach, Mark
2004-04-30
Investigations of neural coding in many brain systems have focused on the role of spike rate and timing as two means of encoding information within a spike train. Recently, statistical pattern recognition methods, such as linear discriminant analysis (LDA), have emerged as a standard approach for examining neural codes. These methods work well when data sets are over-determined (i.e., there are more observations than predictor variables). But this is not always the case in many experimental data sets. One way to reduce the number of predictor variables is to preprocess data prior to classification. Here, a wavelet-based method is described for preprocessing spike trains. The method is based on the discriminant pursuit (DP) algorithm of Buckheit and Donoho [Proc. SPIE 2569 (1995) 540-51]. DP extracts a reduced set of features that are well localized in the time and frequency domains and that can be subsequently analyzed with statistical classifiers. DP is illustrated using neuronal spike trains recorded in the motor cortex of an awake, behaving rat [Laubach et al. Nature 405 (2000) 567-71]. In addition, simulated spike trains that differed only in the timing of spikes are used to show that DP outperforms another method for preprocessing spike trains, principal component analysis (PCA) [Richmond and Optican J. Neurophysiol. 57 (1987) 147-61].
Radiation dose reduction in digital radiography using wavelet-based image processing methods
NASA Astrophysics Data System (ADS)
Watanabe, Haruyuki; Tsai, Du-Yih; Lee, Yongbum; Matsuyama, Eri; Kojima, Katsuyuki
2011-03-01
In this paper, we investigate the effect of the use of wavelet transform for image processing on radiation dose reduction in computed radiography (CR), by measuring various physical characteristics of the wavelet-transformed images. Moreover, we propose a wavelet-based method for offering a possibility to reduce radiation dose while maintaining a clinically acceptable image quality. The proposed method integrates the advantages of a previously proposed technique, i.e., sigmoid-type transfer curve for wavelet coefficient weighting adjustment technique, as well as a wavelet soft-thresholding technique. The former can improve contrast and spatial resolution of CR images, the latter is able to improve the performance of image noise. In the investigation of physical characteristics, modulation transfer function, noise power spectrum, and contrast-to-noise ratio of CR images processed by the proposed method and other different methods were measured and compared. Furthermore, visual evaluation was performed using Scheffe's pair comparison method. Experimental results showed that the proposed method could improve overall image quality as compared to other methods. Our visual evaluation showed that an approximately 40% reduction in exposure dose might be achieved in hip joint radiography by using the proposed method.
Construction of compactly supported biorthogonal wavelet based on Human Visual System
NASA Astrophysics Data System (ADS)
Hu, Haiping; Hou, Weidong; Liu, Hong; Mo, Yu L.
2000-11-01
As an important analysis tool, wavelet transform has made a great development in image compression coding, since Daubechies constructed a kind of compact support orthogonal wavelet and Mallat presented a fast pyramid algorithm for wavelet decomposition and reconstruction. In order to raise the compression ratio and improve the visual quality of reconstruction, it becomes very important to find a wavelet basis that fits the human visual system (HVS). Marr wavelet, as it is known, is a kind of wavelet, so it is not suitable for implementation of image compression coding. In this paper, a new method is provided to construct a kind of compactly supported biorthogonal wavelet based on human visual system, we employ the genetic algorithm to construct compactly supported biorthogonal wavelet that can approximate the modulation transform function for HVS. The novel constructed wavelet is applied to image compression coding in our experiments. The experimental results indicate that the visual quality of reconstruction with the new kind of wavelet is equivalent to other compactly biorthogonal wavelets in the condition of the same bit rate. It has good performance of reconstruction, especially used in texture image compression coding.
Performance evaluation of wavelet-based face verification on a PDA recorded database
NASA Astrophysics Data System (ADS)
Sellahewa, Harin; Jassim, Sabah A.
2006-05-01
The rise of international terrorism and the rapid increase in fraud and identity theft has added urgency to the task of developing biometric-based person identification as a reliable alternative to conventional authentication methods. Human Identification based on face images is a tough challenge in comparison to identification based on fingerprints or Iris recognition. Yet, due to its unobtrusive nature, face recognition is the preferred method of identification for security related applications. The success of such systems will depend on the support of massive infrastructures. Current mobile communication devices (3G smart phones) and PDA's are equipped with a camera which can capture both still and streaming video clips and a touch sensitive display panel. Beside convenience, such devices provide an adequate secure infrastructure for sensitive & financial transactions, by protecting against fraud and repudiation while ensuring accountability. Biometric authentication systems for mobile devices would have obvious advantages in conflict scenarios when communication from beyond enemy lines is essential to save soldier and civilian life. In areas of conflict or disaster the luxury of fixed infrastructure is not available or destroyed. In this paper, we present a wavelet-based face verification scheme that have been specifically designed and implemented on a currently available PDA. We shall report on its performance on the benchmark audio-visual BANCA database and on a newly developed PDA recorded audio-visual database that take include indoor and outdoor recordings.
Pedotransfer functions for Irish soils - estimation of bulk density (ρb) per horizon type
NASA Astrophysics Data System (ADS)
Reidy, B.; Simo, I.; Sills, P.; Creamer, R. E.
2016-01-01
Soil bulk density is a key property in defining soil characteristics. It describes the packing structure of the soil and is also essential for the measurement of soil carbon stock and nutrient assessment. In many older surveys this property was neglected and in many modern surveys this property is omitted due to cost both in laboratory and labour and in cases where the core method cannot be applied. To overcome these oversights pedotransfer functions are applied using other known soil properties to estimate bulk density. Pedotransfer functions have been derived from large international data sets across many studies, with their own inherent biases, many ignoring horizonation and depth variances. Initially pedotransfer functions from the literature were used to predict different horizon type bulk densities using local known bulk density data sets. Then the best performing of the pedotransfer functions were selected to recalibrate and then were validated again using the known data. The predicted co-efficient of determination was 0.5 or greater in 12 of the 17 horizon types studied. These new equations allowed gap filling where bulk density data were missing in part or whole soil profiles. This then allowed the development of an indicative soil bulk density map for Ireland at 0-30 and 30-50 cm horizon depths. In general the horizons with the largest known data sets had the best predictions, using the recalibrated and validated pedotransfer functions.
A method for estimating the height of a mesospheric density level using meteor radar
NASA Astrophysics Data System (ADS)
Younger, J. P.; Reid, I. M.; Vincent, R. A.; Murphy, D. J.
2015-07-01
A new technique for determining the height of a constant density surface at altitudes of 78-85 km is presented. The first results are derived from a decade of observations by a meteor radar located at Davis Station in Antarctica and are compared with observations from the Microwave Limb Sounder instrument aboard the Aura satellite. The density of the neutral atmosphere in the mesosphere/lower thermosphere region around 70-110 km is an essential parameter for interpreting airglow-derived atmospheric temperatures, planning atmospheric entry maneuvers of returning spacecraft, and understanding the response of climate to different stimuli. This region is not well characterized, however, due to inaccessibility combined with a lack of consistent strong atmospheric radar scattering mechanisms. Recent advances in the analysis of detection records from high-performance meteor radars provide new opportunities to obtain atmospheric density estimates at high time resolutions in the MLT region using the durations and heights of faint radar echoes from meteor trails. Previous studies have indicated that the expected increase in underdense meteor radar echo decay times with decreasing altitude is reversed in the lower part of the meteor ablation region due to the neutralization of meteor plasma. The height at which the gradient of meteor echo decay times reverses is found to occur at a fixed atmospheric density. Thus, the gradient reversal height of meteor radar diffusion coefficient profiles can be used to infer the height of a constant density level, enabling the observation of mesospheric density variations using meteor radar.
Warriss, P D; Brown, S N; Knowles, T G
2003-09-13
Five methods for estimating the stocking density of sheep confined in a pen were assessed. The pen (2.35 m x 3.01 m) simulated the pens on a normal road transporter. The trial used 50 lambs (average weight 34 kg) of mixed sex and breed, held at five stocking densities--0.466 to 0.824 m2/100 kg or 214 to 121 kg/m2--covering the range used in commercial practice, and 14 assessors, all experienced in handling animals. The best method was that based on the girth measurement of a sample of animals to estimate liveweight and a count of the animals in the pen. The methods based on using a moveable gate to take up free floor space, assessing the difficulty of moving through the pen of animals, using photographic scales, and counting the numbers of sheep across transects were generally less successful.
A generalised random encounter model for estimating animal density with remote sensor data.
Lucas, Tim C D; Moorcroft, Elizabeth A; Freeman, Robin; Rowcliffe, J Marcus; Jones, Kate E
2015-05-01
Wildlife monitoring technology is advancing rapidly and the use of remote sensors such as camera traps and acoustic detectors is becoming common in both the terrestrial and marine environments. Current methods to estimate abundance or density require individual recognition of animals or knowing the distance of the animal from the sensor, which is often difficult. A method without these requirements, the random encounter model (REM), has been successfully applied to estimate animal densities from count data generated from camera traps. However, count data from acoustic detectors do not fit the assumptions of the REM due to the directionality of animal signals.We developed a generalised REM (gREM), to estimate absolute animal density from count data from both camera traps and acoustic detectors. We derived the gREM for different combinations of sensor detection widths and animal signal widths (a measure of directionality). We tested the accuracy and precision of this model using simulations of different combinations of sensor detection widths and animal signal widths, number of captures and models of animal movement.We find that the gREM produces accurate estimates of absolute animal density for all combinations of sensor detection widths and animal signal widths. However, larger sensor detection and animal signal widths were found to be more precise. While the model is accurate for all capture efforts tested, the precision of the estimate increases with the number of captures. We found no effect of different animal movement models on the accuracy and precision of the gREM.We conclude that the gREM provides an effective method to estimate absolute animal densities from remote sensor count data over a range of sensor and animal signal widths. The gREM is applicable for count data obtained in both marine and terrestrial environments, visually or acoustically (e.g. big cats, sharks, birds, echolocating bats and cetaceans). As sensors such as camera traps and acoustic
Estimation of high-resolution dust column density maps. Empirical model fits
NASA Astrophysics Data System (ADS)
Juvela, M.; Montillaud, J.
2013-09-01
Context. Sub-millimetre dust emission is an important tracer of column density N of dense interstellar clouds. One has to combine surface brightness information at different spatial resolutions, and specific methods are needed to derive N at a resolution higher than the lowest resolution of the observations. Some methods have been discussed in the literature, including a method (in the following, method B) that constructs the N estimate in stages, where the smallest spatial scales being derived only use the shortest wavelength maps. Aims: We propose simple model fitting as a flexible way to estimate high-resolution column density maps. Our goal is to evaluate the accuracy of this procedure and to determine whether it is a viable alternative for making these maps. Methods: The new method consists of model maps of column density (or intensity at a reference wavelength) and colour temperature. The model is fitted using Markov chain Monte Carlo methods, comparing model predictions with observations at their native resolution. We analyse simulated surface brightness maps and compare its accuracy with method B and the results that would be obtained using high-resolution observations without noise. Results: The new method is able to produce reliable column density estimates at a resolution significantly higher than the lowest resolution of the input maps. Compared to method B, it is relatively resilient against the effects of noise. The method is computationally more demanding, but is feasible even in the analysis of large Herschel maps. Conclusions: The proposed empirical modelling method E is demonstrated to be a good alternative for calculating high-resolution column density maps, even with considerable super-resolution. Both methods E and B include the potential for further improvements, e.g., in the form of better a priori constraints.
Stewart, Robert N; White, Devin A; Urban, Marie L; Morton, April M; Webster, Clayton G; Stoyanov, Miroslav K; Bright, Eddie A; Bhaduri, Budhendra L
2013-01-01
The Population Density Tables (PDT) project at the Oak Ridge National Laboratory (www.ornl.gov) is developing population density estimates for specific human activities under normal patterns of life based largely on information available in open source. Currently, activity based density estimates are based on simple summary data statistics such as range and mean. Researchers are interested in improving activity estimation and uncertainty quantification by adopting a Bayesian framework that considers both data and sociocultural knowledge. Under a Bayesian approach knowledge about population density may be encoded through the process of expert elicitation. Due to the scale of the PDT effort which considers over 250 countries, spans 40 human activity categories, and includes numerous contributors, an elicitation tool is required that can be operationalized within an enterprise data collection and reporting system. Such a method would ideally require that the contributor have minimal statistical knowledge, require minimal input by a statistician or facilitator, consider human difficulties in expressing qualitative knowledge in a quantitative setting, and provide methods by which the contributor can appraise whether their understanding and associated uncertainty was well captured. This paper introduces an algorithm that transforms answers to simple, non-statistical questions into a bivariate Gaussian distribution as the prior for the Beta distribution. Based on geometric properties of the Beta distribution parameter feasibility space and the bivariate Gaussian distribution, an automated method for encoding is developed that responds to these challenging enterprise requirements. Though created within the context of population density, this approach may be applicable to a wide array of problem domains requiring informative priors for the Beta distribution.
Cetacean Density Estimation from Novel Acoustic Datasets by Acoustic Propagation Modeling
2012-09-30
not observed in Atlantic bottlenose dolphins and beluga whales for example. The beams were observed to be directed forward between 0˚ and -5˚ in the...data set, collected by a single hydrophone, to estimate the population density of false killer whales (Pseudorca crassidens) off of the Kona coast of...incorporate accurate modeling of sound propagation due to the complexities of its environment. Moreover, the target species chosen for the proposed
Use of spatial capture-recapture modeling and DNA data to estimate densities of elusive animals
Kery, Marc; Gardner, Beth; Stoeckle, Tabea; Weber, Darius; Royle, J. Andrew
2011-01-01
Assessment of abundance, survival, recruitment rates, and density (i.e., population assessment) is especially challenging for elusive species most in need of protection (e.g., rare carnivores). Individual identification methods, such as DNA sampling, provide ways of studying such species efficiently and noninvasively. Additionally, statistical methods that correct for undetected animals and account for locations where animals are captured are available to efficiently estimate density and other demographic parameters. We collected hair samples of European wildcat (Felis silvestris) from cheek-rub lure sticks, extracted DNA from the samples, and identified each animals' genotype. To estimate the density of wildcats, we used Bayesian inference in a spatial capture-recapture model. We used WinBUGS to fit a model that accounted for differences in detection probability among individuals and seasons and between two lure arrays. We detected 21 individual wildcats (including possible hybrids) 47 times. Wildcat density was estimated at 0.29/km2 (SE 0.06), and 95% of the activity of wildcats was estimated to occur within 1.83 km from their home-range center. Lures located systematically were associated with a greater number of detections than lures placed in a cell on the basis of expert opinion. Detection probability of individual cats was greatest in late March. Our model is a generalized linear mixed model; hence, it can be easily extended, for instance, to incorporate trap- and individual-level covariates. We believe that the combined use of noninvasive sampling techniques and spatial capture-recapture models will improve population assessments, especially for rare and elusive animals.
Kernel density estimation applied to bond length, bond angle, and torsion angle distributions.
McCabe, Patrick; Korb, Oliver; Cole, Jason
2014-05-27
We describe the method of kernel density estimation (KDE) and apply it to molecular structure data. KDE is a quite general nonparametric statistical method suitable even for multimodal data. The method generates smooth probability density function (PDF) representations and finds application in diverse fields such as signal processing and econometrics. KDE appears to have been under-utilized as a method in molecular geometry analysis, chemo-informatics, and molecular structure optimization. The resulting probability densities have advantages over histograms and, importantly, are also suitable for gradient-based optimization. To illustrate KDE, we describe its application to chemical bond length, bond valence angle, and torsion angle distributions and show the ability of the method to model arbitrary torsion angle distributions.
Tangkaratt, Voot; Xie, Ning; Sugiyama, Masashi
2015-01-01
Regression aims at estimating the conditional mean of output given input. However, regression is not informative enough if the conditional density is multimodal, heteroskedastic, and asymmetric. In such a case, estimating the conditional density itself is preferable, but conditional density estimation (CDE) is challenging in high-dimensional space. A naive approach to coping with high dimensionality is to first perform dimensionality reduction (DR) and then execute CDE. However, a two-step process does not perform well in practice because the error incurred in the first DR step can be magnified in the second CDE step. In this letter, we propose a novel single-shot procedure that performs CDE and DR simultaneously in an integrated way. Our key idea is to formulate DR as the problem of minimizing a squared-loss variant of conditional entropy, and this is solved using CDE. Thus, an additional CDE step is not needed after DR. We demonstrate the usefulness of the proposed method through extensive experiments on various data sets, including humanoid robot transition and computer art.
Balsa Terzic, Gabriele Bassi
2011-07-01
In this paper we discuss representations of charge particle densities in particle-in-cell (PIC) simulations, analyze the sources and profiles of the intrinsic numerical noise, and present efficient methods for their removal. We devise two alternative estimation methods for charged particle distribution which represent significant improvement over the Monte Carlo cosine expansion used in the 2d code of Bassi, designed to simulate coherent synchrotron radiation (CSR) in charged particle beams. The improvement is achieved by employing an alternative beam density estimation to the Monte Carlo cosine expansion. The representation is first binned onto a finite grid, after which two grid-based methods are employed to approximate particle distributions: (i) truncated fast cosine transform (TFCT); and (ii) thresholded wavelet transform (TWT). We demonstrate that these alternative methods represent a staggering upgrade over the original Monte Carlo cosine expansion in terms of efficiency, while the TWT approximation also provides an appreciable improvement in accuracy. The improvement in accuracy comes from a judicious removal of the numerical noise enabled by the wavelet formulation. The TWT method is then integrated into Bassi's CSR code, and benchmarked against the original version. We show that the new density estimation method provides a superior performance in terms of efficiency and spatial resolution, thus enabling high-fidelity simulations of CSR effects, including microbunching instability.
A new approach on seismic mortality estimations based on average population density
NASA Astrophysics Data System (ADS)
Zhu, Xiaoxin; Sun, Baiqing; Jin, Zhanyong
2016-12-01
This study examines a new methodology to predict the final seismic mortality from earthquakes in China. Most studies established the association between mortality estimation and seismic intensity without considering the population density. In China, however, the data are not always available, especially when it comes to the very urgent relief situation in the disaster. And the population density varies greatly from region to region. This motivates the development of empirical models that use historical death data to provide the path to analyze the death tolls for earthquakes. The present paper employs the average population density to predict the final death tolls in earthquakes using a case-based reasoning model from realistic perspective. To validate the forecasting results, historical data from 18 large-scale earthquakes occurred in China are used to estimate the seismic morality of each case. And a typical earthquake case occurred in the northwest of Sichuan Province is employed to demonstrate the estimation of final death toll. The strength of this paper is that it provides scientific methods with overall forecast errors lower than 20 %, and opens the door for conducting final death forecasts with a qualitative and quantitative approach. Limitations and future research are also analyzed and discussed in the conclusion.
Examining the impact of the precision of address geocoding on estimated density of crime locations
NASA Astrophysics Data System (ADS)
Harada, Yutaka; Shimada, Takahito
2006-10-01
This study examines the impact of the precision of address geocoding on the estimated density of crime locations in a large urban area of Japan. The data consist of two separate sets of the same Penal Code offenses known to the police that occurred during a nine-month period of April 1, 2001 through December 31, 2001 in the central 23 wards of Tokyo. These two data sets are derived from older and newer recording system of the Tokyo Metropolitan Police Department (TMPD), which revised its crime reporting system in that year so that more precise location information than the previous years could be recorded. Each of these data sets was address-geocoded onto a large-scale digital map, using our hierarchical address-geocoding schema, and was examined how such differences in the precision of address information and the resulting differences in address-geocoded incidence locations affect the patterns in kernel density maps. An analysis using 11,096 pairs of incidences of residential burglary (each pair consists of the same incidents geocoded using older and newer address information, respectively) indicates that the kernel density estimation with a cell size of 25×25 m and a bandwidth of 500 m may work quite well in absorbing the poorer precision of geocoded locations based on data from older recording system, whereas in several areas where older recording system resulted in very poor precision level, the inaccuracy of incident locations may produce artifactitious and potentially misleading patterns in kernel density maps.
Cheyne, Susan M; Thompson, Claire J H; Phillips, Abigail C; Hill, Robyn M C; Limin, Suwido H
2008-01-01
We demonstrate that although auditory sampling is a useful tool, this method alone will not provide a truly accurate indication of population size, density and distribution of gibbons in an area. If auditory sampling alone is employed, we show that data collection must take place over a sufficient period to account for variation in calling patterns across seasons. The population of Hylobates albibarbis in the Sabangau catchment, Central Kalimantan, Indonesia, was surveyed from July to December 2005 using methods established previously. In addition, auditory sampling was complemented by detailed behavioural data on six habituated groups within the study area. Here we compare results from this study to those of a 1-month study conducted in 2004. The total population of the Sabangau catchment is estimated to be about in the tens of thousands, though numbers, distribution and density for the different forest subtypes vary considerably. We propose that future density surveys of gibbons must include data from all forest subtypes where gibbons are found and that extrapolating from one forest subtype is likely to yield inaccurate density and population estimates. We also propose that auditory census be carried out by using at least three listening posts (LP) in order to increase the area sampled and the chances of hearing groups. Our results suggest that the Sabangau catchment contains one of the largest remaining contiguous populations of Bornean agile gibbon.
Density-dependent analysis of nonequilibrium paths improves free energy estimates
Minh, David D. L.
2009-01-01
When a system is driven out of equilibrium by a time-dependent protocol that modifies the Hamiltonian, it follows a nonequilibrium path. Samples of these paths can be used in nonequilibrium work theorems to estimate equilibrium quantities such as free energy differences. Here, we consider analyzing paths generated with one protocol using another one. It is posited that analysis protocols which minimize the lag, the difference between the nonequilibrium and the instantaneous equilibrium densities, will reduce the dissipation of reprocessed trajectories and lead to better free energy estimates. Indeed, when minimal lag analysis protocols based on exactly soluble propagators or relative entropies are applied to several test cases, substantial gains in the accuracy and precision of estimated free energy differences are observed. PMID:19485432
Optimal diffusion MRI acquisition for fiber orientation density estimation: an analytic approach.
White, Nathan S; Dale, Anders M
2009-11-01
An important challenge in the design of diffusion MRI experiments is how to optimize statistical efficiency, i.e., the accuracy with which parameters can be estimated from the diffusion data in a given amount of imaging time. In model-based spherical deconvolution analysis, the quantity of interest is the fiber orientation density (FOD). Here, we demonstrate how the spherical harmonics (SH) can be used to form an explicit analytic expression for the efficiency of the minimum variance (maximally efficient) linear unbiased estimator of the FOD. Using this expression, we calculate optimal b-values for maximum FOD estimation efficiency with SH expansion orders of L = 2, 4, 6, and 8 to be approximately b = 1,500, 3,000, 4,600, and 6,200 s/mm(2), respectively. However, the arrangement of diffusion directions and scanner-specific hardware limitations also play a role in determining the realizable efficiency of the FOD estimator that can be achieved in practice. We show how some commonly used methods for selecting diffusion directions are sometimes inefficient, and propose a new method for selecting diffusion directions in MRI based on maximizing the statistical efficiency. We further demonstrate how scanner-specific hardware limitations generally lead to optimal b-values that are slightly lower than the ideal b-values. In summary, the analytic expression for the statistical efficiency of the unbiased FOD estimator provides important insight into the fundamental tradeoff between angular resolution, b-value, and FOD estimation accuracy.
Estimation of carbon storage and carbon density of forest vegetation in Ili River Valley, Xinjiang
NASA Astrophysics Data System (ADS)
jing, Guo; renping, Zhang; ranghui, Wang; aimaiti, Yusupujiang; tuerdi, Asiyemu; dongya, Zhang
2016-11-01
Study on the forest carbon storage, carbon density and spatial distribution characteristic are helpful for improving the accuracy of carbon estimation and providing the practical basis for better policy making. In this research, the compiled data of 'Xinjiang Forest Resources Survey Results' in 2011 was used as a source data, by using the biomass-volume regression model and average biomass method, the carbon storage, carbon density and spatial distribution of forest resources in Ili River Valley region were analyzed. Results show that, the total biomass, carbon storage and average carbon density in Ili River valley were 69.647Tg, 34.823Tg and 41.45Mg/hm2 C respectively. From the aspect of spatial distribution, the northwest region of Ili River Valley has high carbon storage and the southeast region has low carbon storage. The southwest region has low carbon density and the northeast region has high carbon density. The value of forest Carbon storage from high to low was: Arbor > Shrub > Sparse forest > Odd tree > Economic forest > Scattered trees. Mature arbor forest plays an important role in maintaining the balance of carbon dioxide and oxygen in Ili River Valley region.
Estimates of the Electron Density Profile on LTX Using FMCW Reflectometry and mm-Wave Interferometry
NASA Astrophysics Data System (ADS)
Peebles, W. A.; Kubota, S.; Nguyen, X. V.; Holoman, T.; Kaita, R.; Kozub, T.; Labrie, D.; Schmitt, J. C.; Majeski, R.
2014-10-01
An FMCW (frequency-modulated continuous-wave) reflectometer has been installed on the Lithium Tokamak Experiment (LTX) for electron density profile and fluctuation measurements. This diagnostic consists of two channels using bistatic antennas with a combined frequency coverage of 13.5 -33 GHz, which corresponds to electron density measurements in the range of 0 . 2 - 1 . 3 ×1013 cm-3 (in O-mode). Initial measurements will utilize O-mode polarization, which will require modeling of the plasma edge. Reflections from the center stack (delayometry above the peak cutoff frequency), as well as line density measurements from a 296 GHz interferometer (single-chord, radial midplane), will provide constraints for the profile reconstruction/estimate. Typical chord-averaged line densities on LTX range from 2 -6 ×1012 cm-3, which correspond to peak densities of 0 . 6 - 1 . 8 ×1013 cm-3 assuming a parabolic shape. If available, EFIT/LRDFIT results will provide additional constraints, as well as the possibility of utilizing data from measurements with X-mode or dual-mode (simultaneous O- and X-mode) polarization. Supported by U.S. DoE Grants DE-FG02-99ER54527 and DE-AC02-09CH11466.
Pedotransfer functions for Irish soils - estimation of bulk density (ρb) per horizon type
NASA Astrophysics Data System (ADS)
Reidy, B.; Simo, I.; Sills, P.; Creamer, R. E.
2015-10-01
Soil bulk density is a key property in defining soil characteristics. It describes the packing structure of the soil and is also essential for the measurement of soil carbon stock and nutrient assessment. In many older surveys this property was neglected and in many modern surveys this property is omitted due to cost both in laboratory and labour and in cases where the core method cannot be applied. To overcome these oversights pedotransfer functions are applied using other known soil properties to estimate bulk density. Pedotransfer functions have been derived from large international datasets across many studies, with their own inherent biases, many ignoring horizonation and depth variances. Initially pedotransfer functions from the literature were used to predict different horizon types using local known bulk density datasets. Then the best performing of the pedotransfer functions, were selected to recalibrate and then were validated again using the known data. The predicted co-efficient of determination was 0.5 or greater in 12 of the 17 horizon types studied. These new equations allowed gap filling where bulk density data was missing in part or whole soil profiles. This then allowed the development of an indicative soil bulk density map for Ireland at 0-30 and 30-50 cm horizon depths. In general the horizons with the largest known datasets had the best predictions, using the recalibrated and validated pedotransfer functions.
mBEEF-vdW: Robust fitting of error estimation density functionals
NASA Astrophysics Data System (ADS)
Lundgaard, Keld T.; Wellendorff, Jess; Voss, Johannes; Jacobsen, Karsten W.; Bligaard, Thomas
2016-06-01
We propose a general-purpose semilocal/nonlocal exchange-correlation functional approximation, named mBEEF-vdW. The exchange is a meta generalized gradient approximation, and the correlation is a semilocal and nonlocal mixture, with the Rutgers-Chalmers approximation for van der Waals (vdW) forces. The functional is fitted within the Bayesian error estimation functional (BEEF) framework [J. Wellendorff et al., Phys. Rev. B 85, 235149 (2012), 10.1103/PhysRevB.85.235149; J. Wellendorff et al., J. Chem. Phys. 140, 144107 (2014), 10.1063/1.4870397]. We improve the previously used fitting procedures by introducing a robust MM-estimator based loss function, reducing the sensitivity to outliers in the datasets. To more reliably determine the optimal model complexity, we furthermore introduce a generalization of the bootstrap 0.632 estimator with hierarchical bootstrap sampling and geometric mean estimator over the training datasets. Using this estimator, we show that the robust loss function leads to a 10 % improvement in the estimated prediction error over the previously used least-squares loss function. The mBEEF-vdW functional is benchmarked against popular density functional approximations over a wide range of datasets relevant for heterogeneous catalysis, including datasets that were not used for its training. Overall, we find that mBEEF-vdW has a higher general accuracy than competing popular functionals, and it is one of the best performing functionals on chemisorption systems, surface energies, lattice constants, and dispersion. We also show the potential-energy curve of graphene on the nickel(111) surface, where mBEEF-vdW matches the experimental binding length. mBEEF-vdW is currently available in gpaw and other density functional theory codes through Libxc, version 3.0.0.
Phase-space structures - I. A comparison of 6D density estimators
NASA Astrophysics Data System (ADS)
Maciejewski, M.; Colombi, S.; Alard, C.; Bouchet, F.; Pichon, C.
2009-03-01
In the framework of particle-based Vlasov systems, this paper reviews and analyses different methods recently proposed in the literature to identify neighbours in 6D space and estimate the corresponding phase-space density. Specifically, it compares smoothed particle hydrodynamics (SPH) methods based on tree partitioning to 6D Delaunay tessellation. This comparison is carried out on statistical and dynamical realizations of single halo profiles, paying particular attention to the unknown scaling, SG, used to relate the spatial dimensions to the velocity dimensions. It is found that, in practice, the methods with local adaptive metric provide the best phase-space estimators. They make use of a Shannon entropy criterion combined with a binary tree partitioning and with subsequent SPH interpolation using 10-40 nearest neighbours. We note that the local scaling SG implemented by such methods, which enforces local isotropy of the distribution function, can vary by about one order of magnitude in different regions within the system. It presents a bimodal distribution, in which one component is dominated by the main part of the halo and the other one is dominated by the substructures of the halo. While potentially better than SPH techniques, since it yields an optimal estimate of the local softening volume (and therefore the local number of neighbours required to perform the interpolation), the Delaunay tessellation in fact generally poorly estimates the phase-space distribution function. Indeed, it requires, prior to its implementation, the choice of a global scaling SG. We propose two simple but efficient methods to estimate SG that yield a good global compromise. However, the Delaunay interpolation still remains quite sensitive to local anisotropies in the distribution. To emphasize the advantages of 6D analysis versus traditional 3D analysis, we also compare realistic 6D phase-space density estimation with the proxy proposed earlier in the literature, Q = ρ/σ3
Chestnut, Tara E.; Anderson, Chauncey; Popa, Radu; Blaustein, Andrew R.; Voytek, Mary; Olson, Deanna H.; Kirshtein, Julie
2014-01-01
Biodiversity losses are occurring worldwide due to a combination of stressors. For example, by one estimate, 40% of amphibian species are vulnerable to extinction, and disease is one threat to amphibian populations. The emerging infectious disease chytridiomycosis, caused by the aquatic fungus Batrachochytrium dendrobatidis (Bd), is a contributor to amphibian declines worldwide. Bd research has focused on the dynamics of the pathogen in its amphibian hosts, with little emphasis on investigating the dynamics of free-living Bd. Therefore, we investigated patterns of Bd occupancy and density in amphibian habitats using occupancy models, powerful tools for estimating site occupancy and detection probability. Occupancy models have been used to investigate diseases where the focus was on pathogen occurrence in the host. We applied occupancy models to investigate free-living Bd in North American surface waters to determine Bd seasonality, relationships between Bd site occupancy and habitat attributes, and probability of detection from water samples as a function of the number of samples, sample volume, and water quality. We also report on the temporal patterns of Bd density from a 4-year case study of a Bd-positive wetland. We provide evidence that Bd occurs in the environment year-round. Bd exhibited temporal and spatial heterogeneity in density, but did not exhibit seasonality in occupancy. Bd was detected in all months, typically at less than 100 zoospores L−1. The highest density observed was ∼3 million zoospores L−1. We detected Bd in 47% of sites sampled, but estimated that Bd occupied 61% of sites, highlighting the importance of accounting for imperfect detection. When Bd was present, there was a 95% chance of detecting it with four samples of 600 ml of water or five samples of 60 mL. Our findings provide important baseline information to advance the study of Bd disease ecology, and advance our understanding of amphibian exposure to free-living Bd in aquatic
Chestnut, Tara; Anderson, Chauncey; Popa, Radu; Blaustein, Andrew R; Voytek, Mary; Olson, Deanna H; Kirshtein, Julie
2014-01-01
Biodiversity losses are occurring worldwide due to a combination of stressors. For example, by one estimate, 40% of amphibian species are vulnerable to extinction, and disease is one threat to amphibian populations. The emerging infectious disease chytridiomycosis, caused by the aquatic fungus Batrachochytrium dendrobatidis (Bd), is a contributor to amphibian declines worldwide. Bd research has focused on the dynamics of the pathogen in its amphibian hosts, with little emphasis on investigating the dynamics of free-living Bd. Therefore, we investigated patterns of Bd occupancy and density in amphibian habitats using occupancy models, powerful tools for estimating site occupancy and detection probability. Occupancy models have been used to investigate diseases where the focus was on pathogen occurrence in the host. We applied occupancy models to investigate free-living Bd in North American surface waters to determine Bd seasonality, relationships between Bd site occupancy and habitat attributes, and probability of detection from water samples as a function of the number of samples, sample volume, and water quality. We also report on the temporal patterns of Bd density from a 4-year case study of a Bd-positive wetland. We provide evidence that Bd occurs in the environment year-round. Bd exhibited temporal and spatial heterogeneity in density, but did not exhibit seasonality in occupancy. Bd was detected in all months, typically at less than 100 zoospores L(-1). The highest density observed was ∼3 million zoospores L(-1). We detected Bd in 47% of sites sampled, but estimated that Bd occupied 61% of sites, highlighting the importance of accounting for imperfect detection. When Bd was present, there was a 95% chance of detecting it with four samples of 600 ml of water or five samples of 60 mL. Our findings provide important baseline information to advance the study of Bd disease ecology, and advance our understanding of amphibian exposure to free-living Bd in aquatic
Chestnut, Tara; Anderson, Chauncey; Popa, Radu; Blaustein, Andrew R.; Voytek, Mary; Olson, Deanna H.; Kirshtein, Julie
2014-01-01
Biodiversity losses are occurring worldwide due to a combination of stressors. For example, by one estimate, 40% of amphibian species are vulnerable to extinction, and disease is one threat to amphibian populations. The emerging infectious disease chytridiomycosis, caused by the aquatic fungus Batrachochytrium dendrobatidis (Bd), is a contributor to amphibian declines worldwide. Bd research has focused on the dynamics of the pathogen in its amphibian hosts, with little emphasis on investigating the dynamics of free-living Bd. Therefore, we investigated patterns of Bd occupancy and density in amphibian habitats using occupancy models, powerful tools for estimating site occupancy and detection probability. Occupancy models have been used to investigate diseases where the focus was on pathogen occurrence in the host. We applied occupancy models to investigate free-living Bd in North American surface waters to determine Bd seasonality, relationships between Bd site occupancy and habitat attributes, and probability of detection from water samples as a function of the number of samples, sample volume, and water quality. We also report on the temporal patterns of Bd density from a 4-year case study of a Bd-positive wetland. We provide evidence that Bd occurs in the environment year-round. Bd exhibited temporal and spatial heterogeneity in density, but did not exhibit seasonality in occupancy. Bd was detected in all months, typically at less than 100 zoospores L−1. The highest density observed was ∼3 million zoospores L−1. We detected Bd in 47% of sites sampled, but estimated that Bd occupied 61% of sites, highlighting the importance of accounting for imperfect detection. When Bd was present, there was a 95% chance of detecting it with four samples of 600 ml of water or five samples of 60 mL. Our findings provide important baseline information to advance the study of Bd disease ecology, and advance our understanding of amphibian exposure to free-living Bd in aquatic
Crowe, D.E.; Longshore, K.M.
2010-01-01
We estimated relative abundance and density of Western Burrowing Owls (Athene cunicularia hypugaea) at two sites in the Mojave Desert (200304). We made modifications to previously established Burrowing Owl survey techniques for use in desert shrublands and evaluated several factors that might influence the detection of owls. We tested the effectiveness of the call-broadcast technique for surveying this species, the efficiency of this technique at early and late breeding stages, and the effectiveness of various numbers of vocalization intervals during broadcasting sessions. Only 1 (3) of 31 initial (new) owl responses was detected during passive-listening sessions. We found that surveying early in the nesting season was more likely to produce new owl detections compared to surveying later in the nesting season. New owls detected during each of the three vocalization intervals (each consisting of 30 sec of vocalizations followed by 30 sec of silence) of our broadcasting session were similar (37, 40, and 23; n 30). We used a combination of detection trials (sighting probability) and double-observer method to estimate the components of detection probability, i.e., availability and perception. Availability for all sites and years, as determined by detection trials, ranged from 46.158.2. Relative abundance, measured as frequency of occurrence and defined as the proportion of surveys with at least one owl, ranged from 19.232.0 for both sites and years. Density at our eastern Mojave Desert site was estimated at 0.09 ?? 0.01 (SE) owl territories/km2 and 0.16 ?? 0.02 (SE) owl territories/km2 during 2003 and 2004, respectively. In our southern Mojave Desert site, density estimates were 0.09 ?? 0.02 (SE) owl territories/km2 and 0.08 ?? 0.02 (SE) owl territories/km 2 during 2004 and 2005, respectively. ?? 2010 The Raptor Research Foundation, Inc.
A long-term evaluation of biopsy darts and DNA to estimate cougar density
Beausoleil, Richard A.; Clark, Joseph D.; Maletzke, Benjamin T.
2016-01-01
Accurately estimating cougar (Puma concolor) density is usually based on long-term research consisting of intensive capture and Global Positioning System collaring efforts and may cost hundreds of thousands of dollars annually. Because wildlife agency budgets rarely accommodate this approach, most infer cougar density from published literature, rely on short-term studies, or use hunter harvest data as a surrogate in their jurisdictions; all of which may limit accuracy and increase risk of management actions. In an effort to develop a more cost-effective long-term strategy, we evaluated a research approach using citizen scientists with trained hounds to tree cougars and collect tissue samples with biopsy darts. We then used the DNA to individually identify cougars and employed spatially explicit capture–recapture models to estimate cougar densities. Overall, 240 tissue samples were collected in northeastern Washington, USA, producing 166 genotypes (including recaptures and excluding dependent kittens) of 133 different cougars (8-25/yr) from 2003 to 2011. Mark–recapture analyses revealed a mean density of 2.2 cougars/100 km2 (95% CI=1.1-4.3) and stable to decreasing population trends (β=-0.048, 95% CI=-0.106–0.011) over the 9 years of study, with an average annual harvest rate of 14% (range=7-21%). The average annual cost per year for field sampling and genotyping was US$11,265 ($422.24/sample or $610.73/successfully genotyped sample). Our results demonstrated that long-term biopsy sampling using citizen scientists can increase capture success and provide reliable cougar-density information at a reasonable cost.
Ahn, Yongjun; Yeo, Hwasoo
2015-01-01
The charging infrastructure location problem is becoming more significant due to the extensive adoption of electric vehicles. Efficient charging station planning can solve deeply rooted problems, such as driving-range anxiety and the stagnation of new electric vehicle consumers. In the initial stage of introducing electric vehicles, the allocation of charging stations is difficult to determine due to the uncertainty of candidate sites and unidentified charging demands, which are determined by diverse variables. This paper introduces the Estimating the Required Density of EV Charging (ERDEC) stations model, which is an analytical approach to estimating the optimal density of charging stations for certain urban areas, which are subsequently aggregated to city level planning. The optimal charging station's density is derived to minimize the total cost. A numerical study is conducted to obtain the correlations among the various parameters in the proposed model, such as regional parameters, technological parameters and coefficient factors. To investigate the effect of technological advances, the corresponding changes in the optimal density and total cost are also examined by various combinations of technological parameters. Daejeon city in South Korea is selected for the case study to examine the applicability of the model to real-world problems. With real taxi trajectory data, the optimal density map of charging stations is generated. These results can provide the optimal number of chargers for driving without driving-range anxiety. In the initial planning phase of installing charging infrastructure, the proposed model can be applied to a relatively extensive area to encourage the usage of electric vehicles, especially areas that lack information, such as exact candidate sites for charging stations and other data related with electric vehicles. The methods and results of this paper can serve as a planning guideline to facilitate the extensive adoption of electric
Ahn, Yongjun; Yeo, Hwasoo
2015-01-01
The charging infrastructure location problem is becoming more significant due to the extensive adoption of electric vehicles. Efficient charging station planning can solve deeply rooted problems, such as driving-range anxiety and the stagnation of new electric vehicle consumers. In the initial stage of introducing electric vehicles, the allocation of charging stations is difficult to determine due to the uncertainty of candidate sites and unidentified charging demands, which are determined by diverse variables. This paper introduces the Estimating the Required Density of EV Charging (ERDEC) stations model, which is an analytical approach to estimating the optimal density of charging stations for certain urban areas, which are subsequently aggregated to city level planning. The optimal charging station’s density is derived to minimize the total cost. A numerical study is conducted to obtain the correlations among the various parameters in the proposed model, such as regional parameters, technological parameters and coefficient factors. To investigate the effect of technological advances, the corresponding changes in the optimal density and total cost are also examined by various combinations of technological parameters. Daejeon city in South Korea is selected for the case study to examine the applicability of the model to real-world problems. With real taxi trajectory data, the optimal density map of charging stations is generated. These results can provide the optimal number of chargers for driving without driving-range anxiety. In the initial planning phase of installing charging infrastructure, the proposed model can be applied to a relatively extensive area to encourage the usage of electric vehicles, especially areas that lack information, such as exact candidate sites for charging stations and other data related with electric vehicles. The methods and results of this paper can serve as a planning guideline to facilitate the extensive adoption of electric
Extinction risk of a density-dependent population estimated from a time series of population size.
Hakoyama, H; Iwasa, Y
2000-06-07
Environmental threats, such as habitat size reduction or environmental pollution, may not cause immediate extinction of a population but shorten the expected time to extinction. We develop a method to estimate the mean time to extinction for a density-dependent population with environmental fluctuation. We first derive a formula for a stochastic differential equation model (canonical model) of a population with logistic growth with environmental and demographic stochasticities. We then study an approximate maximum likelihood (AML) estimate of three parameters (intrinsic growth rate r, carrying capacity K, and environmental stochasticity sigma(2)(e)) from a time series of population size. The AML estimate of r has a significant bias, but by adopting the Monte Carlo method, we can remove the bias very effectively (bias-corrected estimate). We can also determine the confidence interval of the parameter based on the Monte Carlo method. If the length of the time series is moderately long (with 40-50 data points), parameter estimation with the Monte Carlo sampling bias correction has a relatively small variance. However, if the time series is short (less than or equal to 10 data points), the estimate has a large variance and is not reliable. If we know the intrinsic growth rate r, however, the estimate of K and sigma(2)(e)and the mean extinction time T are reliable even if only a short time series is available. We illustrate the method using data for a freshwater fish, Japanese crucian carp (Carassius auratus subsp.) in Lake Biwa, in which the growth rate and environmental noise of crucian carp are estimated using fishery records.
Identification of differentially methylated loci using wavelet-based functional mixed models
Lee, Wonyul; Morris, Jeffrey S.
2016-01-01
Motivation: DNA methylation is a key epigenetic modification that can modulate gene expression. Over the past decade, a lot of studies have focused on profiling DNA methylation and investigating its alterations in complex diseases such as cancer. While early studies were mostly restricted to CpG islands or promoter regions, recent findings indicate that many of important DNA methylation changes can occur in other regions and DNA methylation needs to be examined on a genome-wide scale. In this article, we apply the wavelet-based functional mixed model methodology to analyze the high-throughput methylation data for identifying differentially methylated loci across the genome. Contrary to many commonly-used methods that model probes independently, this framework accommodates spatial correlations across the genome through basis function modeling as well as correlations between samples through functional random effects, which allows it to be applied to many different settings and potentially leads to more power in detection of differential methylation. Results: We applied this framework to three different high-dimensional methylation data sets (CpG Shore data, THREE data and NIH Roadmap Epigenomics data), studied previously in other works. A simulation study based on CpG Shore data suggested that in terms of detection of differentially methylated loci, this modeling approach using wavelets outperforms analogous approaches modeling the loci as independent. For the THREE data, the method suggests newly detected regions of differential methylation, which were not reported in the original study. Availability and implementation: Automated software called WFMM is available at https://biostatistics.mdanderson.org/SoftwareDownload. CpG Shore data is available at http://rafalab.dfci.harvard.edu. NIH Roadmap Epigenomics data is available at http://compbio.mit.edu/roadmap. Supplementary information: Supplementary data are available at Bioinformatics online. Contact: jefmorris
A wavelet-based structural damage assessment approach with progressively downloaded sensor data
NASA Astrophysics Data System (ADS)
Li, Jian; Zhang, Yunfeng; Zhu, Songye
2008-02-01
This paper presents a wavelet-based on-line damage assessment approach based on the use of progressively transmitted multi-resolution sensor data. In extreme events like strong earthquakes, real-time retrieval of structural monitoring data and on-line damage assessment of civil infrastructures are crucial for emergency relief and disaster assistance efforts such as resource allocation and evacuation route arrangement. Due to the limited communication bandwidth available to data transmission during and immediately after major earthquakes, innovative methods for integrated sensor data transmission and on-line damage assessment are highly desired. The proposed approach utilizes a lifting scheme wavelet transform to generate multi-resolution sensor data, which are transmitted progressively in increasing resolution. Multi-resolution sensor data enable interactive on-line condition assessment of structural damages. To validate this concept, a hysteresis-based damage assessment method, proposed by Iwan for extreme-event use, is selected in this study. A sensitivity study on the hysteresis-based damage assessment method under varying data resolution levels was conducted using simulation data from a six-story steel braced frame building subjected to earthquake ground motion. The results of this study show that the proposed approach is capable of reducing the raw sensor data size by a significant amount while having a minor effect on the accuracy of hysteresis-based damage assessment. The proposed approach provides a valuable decision support tool for engineers and emergency response personnel who want to access the data in real time and perform on-line damage assessment in an efficient manner.
A 2D wavelet-based spectral finite element method for elastic wave propagation
NASA Astrophysics Data System (ADS)
Pahlavan, L.; Kassapoglou, C.; Suiker, A. S. J.; Gürdal, Z.
2012-10-01
A wavelet-based spectral finite element method (WSFEM) is presented that may be used for an accurate and efficient analysis of elastic wave propagation in two-dimensional (2D) structures. The approach is characterised by a temporal transformation of the governing equations to the wavelet domain using a wavelet-Galerkin approach, and subsequently performing the spatial discretisation in the wavelet domain with the finite element method (FEM). The final solution is obtained by transforming the nodal displacements computed in the wavelet domain back to the time domain. The method straightforwardly eliminates artificial temporal edge effects resulting from the discrete wavelet transform and allows for the modelling of structures with arbitrary geometries and boundary conditions. The accuracy and applicability of the method is demonstrated through (i) the analysis of a benchmark problem on axial and flexural waves (Lamb waves) propagating in an isotropic layer, and (ii) the study of a plate subjected to impact loading. The wave propagation response for the impact problem is compared to the result computed with standard FEM equipped with a direct time-integration scheme. The effect of anisotropy on the response is demonstrated by comparing the numerical result for an isotropic plate to that of an orthotropic plate, and to that of a plate made of two dissimilar materials, with and without a cut-out at one of the plate corners. The decoupling of the time-discretised equations in the wavelet domain makes the method inherently suitable for parallel computation, and thus an appealing candidate for efficiently studying high-frequency wave propagation in engineering structures with a large number of degrees of freedom.
Boersen, Mark R.; Clark, Joseph D.; King, Tim L.
2003-01-01
The Recovery Plan for the federally threatened Louisiana black bear (Ursus americanus luteolus) mandates that remnant populations be estimated and monitored. In 1999 we obtained genetic material with barbed-wire hair traps to estimate bear population size and genetic diversity at the 329-km2 Tensas River Tract, Louisiana. We constructed and monitored 122 hair traps, which produced 1,939 hair samples. Of those, we randomly selected 116 subsamples for genetic analysis and used up to 12 microsatellite DNA markers to obtain multilocus genotypes for 58 individuals. We used Program CAPTURE to compute estimates of population size using multiple mark-recapture models. The area of study was almost entirely circumscribed by agricultural land, thus the population was geographically closed. Also, study-area boundaries were biologically discreet, enabling us to accurately estimate population density. Using model Chao Mh to account for possible effects of individual heterogeneity in capture probabilities, we estimated the population size to be 119 (SE=29.4) bears, or 0.36 bears/km2. We were forced to examine a substantial number of loci to differentiate between some individuals because of low genetic variation. Despite the probable introduction of genes from Minnesota bears in the 1960s, the isolated population at Tensas exhibited characteristics consistent with inbreeding and genetic drift. Consequently, the effective population size at Tensas may be as few as 32, which warrants continued monitoring or possibly genetic augmentation.
The Effects of Surfactants on the Estimation of Bacterial Density in Petroleum Samples
NASA Astrophysics Data System (ADS)
Luna, Aderval Severino; da Costa, Antonio Carlos Augusto; Gonçalves, Márcia Monteiro Machado; de Almeida, Kelly Yaeko Miyashiro
The effect of the surfactants polyoxyethylene monostearate (Tween 60), polyoxyethylene monooleate (Tween 80), cetyl trimethyl ammonium bromide (CTAB), and sodium dodecyl sulfate (SDS) on the estimation of bacterial density (sulfate-reducing bacteria [SRB] and general anaerobic bacteria [GAnB]) was examined in petroleum samples. Three different compositions of oil and water were selected to be representative of the real samples. The first one contained a high content of oil, the second one contained a medium content of oil, and the last one contained a low content of oil. The most probable number (MPN) was used to estimate the bacterial density. The results showed that the addition of surfactants did not improve the SRB quantification for the high or medium oil content in the petroleum samples. On other hand, Tween 60 and Tween 80 promoted a significant increase on the GAnB quantification at 0.01% or 0.03% m/v concentrations, respectively. CTAB increased SRB and GAnB estimation for the sample with a low oil content at 0.00005% and 0.0001% m/v, respectively.
Wavelet-based SAR images despeckling using joint hidden Markov model
NASA Astrophysics Data System (ADS)
Li, Qiaoliang; Wang, Guoyou; Liu, Jianguo; Chen, Shaobo
2007-11-01
In the past few years, wavelet-domain hidden Markov models have proven to be useful tools for statistical signal and image processing. The hidden Markov tree (HMT) model captures the key features of the joint probability density of the wavelet coefficients of real-world data. One potential drawback to the HMT framework is the deficiency for taking account of intrascale correlations that exist among neighboring wavelet coefficients. In this paper, we propose to develop a joint hidden Markov model by fusing the wavelet Bayesian denoising technique with an image regularization procedure based on HMT and Markov random field (MRF). The Expectation Maximization algorithm is used to estimate hyperparameters and specify the mixture model. The noise-free wavelet coefficients are finally estimated by a shrinkage function based on local weighted averaging of the Bayesian estimator. It is shown that the joint method outperforms lee filter and standard HMT techniques in terms of the integrative measure of the equivalent number of looks (ENL) and Pratt's figure of merit(FOM), especially when dealing with speckle noise in large variance.
Exospheric hydrogen density estimates from absorption dips in GOES solar irradiance measurements
NASA Astrophysics Data System (ADS)
Machol, J. L.; Loto'aniu, P. T. M.; Snow, M. A.; Viereck, R. A.; Woodraska, D.; Jones, A. R.; Bailey, J. J.; Gruntman, M.; Redmon, R. J.
2015-12-01
We use extreme ultraviolet (EUV) measurements of solar irradiance from GOES satellites to derive daily hydrogen (H) density distributions of the terrestrial upper atmosphere. GOES satellites are in geostationary orbit and measure solar irradiance in a wavelength band around the Lyman-alpha line. When the satellite is on the night-side of the Earth looking through the atmosphere at the Sun, the irradiance exhibits absorption/scattering loss. Using these daily dips in the measured irradiance, we can estimate a simple hydrogen density distribution for the exosphere based on the integrated scattering loss along the line of sight towards the Sun. We show preliminary results from this technique and compare the derived exospheric H density distributions with other data sets for different solar, geomagnetic and atmospheric conditions. The GOES observations will be available for many years into the future and so potentially can provide continuous monitoring of exospheric H density for use in full atmospheric models. These measurements may also provide a means to validate, calibrate and improve other exospheric models. Improved models will help with the understanding of the solar-upper atmospheric coupling and the decay of the ions in the magnetospheric ring current during geomagnetic storms. Long-term observations of trends can be used to monitor impacts of climate change and improved satellite drag models will help satellite operator adjust satellite orbits during geomagnetic storms. We discuss planned improvements to this technique.
NASA Technical Reports Server (NTRS)
Justh, Hilary L.; Justus, C. G.
2009-01-01
A recent study (Desai, 2008) has shown that the actual landing sites of Mars Pathfinder, the Mars Exploration Rovers (Spirit and Opportunity) and the Phoenix Mars Lander have been further downrange than predicted by models prior to landing Desai's reconstruction of their entries into the Martian atmosphere showed that the models consistently predicted higher densities than those found upon entry, descent and landing. Desai's results have raised a question as to whether there is a systemic problem within Mars atmospheric models. Proposal is to compare Mars atmospheric density estimates from Mars atmospheric models to measurements made by Mars Global Surveyor (MGS). Comparison study requires the completion of several tasks that would result in a greater understanding of reasons behind the discrepancy found during recent landings on Mars and possible solutions to this problem.
"Prospecting Asteroids: Indirect technique to estimate overall density and inner composition"
NASA Astrophysics Data System (ADS)
Such, Pamela
2016-07-01
Spectroscopic studies of asteroids make possible to obtain some information on their composition from the surface but say little about the innermost material, porosity and density of the object. In addition, spectroscopic observations are affected by the effects of "space weathering" produced by the bombardment of charged particles for certain materials that change their chemical structure, albedo and other physical properties, partly altering their chances of identification. Data such as the mass, size and density of the asteroids are essential at the time to propose space missions in order to determine the best candidates for space exploration and is of great importance to determine a priori any of them remotely from Earth. From many years ago its determined masses of largest asteroids studying the gravitational effects they have on smaller asteroids when they approach them (see Davis and Bender, 1977; Schubart and Matson, 1979; School et al 1987; Hoffman, 1989b, among others), but estimates of the masses of the smallest objects is limited to the effects that occur in extreme close encounters to other asteroids of similar size. This paper presents the results of a search for approaches of pair of asteroids that approximate distances less than 0.0004 UA (50,000 km) of each other in order to study their masses through the astrometric method and to estimate in a future their densities and internal composition. References Davis, D. R., and D. F. Bender. 1977. Asteroid mass determinations: search for futher encounter opportunities. Bull. Am. Astron. Soc. 9, 502-503. Hoffman, M. 1989b. Asteroid mass determination: Present situation and perspectives. In asteroids II (R. P. Binzel, T. Gehreis, and M. S. Matthews, Eds.), pp 228-239. Univ. Arizona Press, Tucson. School, H. L. D. Schmadel and S. Roser 1987. The mass of the asteroid (10) Hygiea derived from observations of (829) Academia. Astron. Astrophys. 179, 311-316. Schubart, J. And D. L. Matson 1979. Masses and
Axonal and dendritic density field estimation from incomplete single-slice neuronal reconstructions
van Pelt, Jaap; van Ooyen, Arjen; Uylings, Harry B. M.
2014-01-01
Neuronal information processing in cortical networks critically depends on the organization of synaptic connectivity. Synaptic connections can form when axons and dendrites come in close proximity of each other. The spatial innervation of neuronal arborizations can be described by their axonal and dendritic density fields. Recently we showed that potential locations of synapses between neurons can be estimated from their overlapping axonal and dendritic density fields. However, deriving density fields from single-slice neuronal reconstructions is hampered by incompleteness because of cut branches. Here, we describe a method for recovering the lost axonal and dendritic mass. This so-called completion method is based on an estimation of the mass inside the slice and an extrapolation to the space outside the slice, assuming axial symmetry in the mass distribution. We validated the method using a set of neurons generated with our NETMORPH simulator. The model-generated neurons were artificially sliced and subsequently recovered by the completion method. Depending on slice thickness and arbor extent, branches that have lost their outside parents (orphan branches) may occur inside the slice. Not connected anymore to the contiguous structure of the sliced neuron, orphan branches result in an underestimation of neurite mass. For 300 μm thick slices, however, the validation showed a full recovery of dendritic and an almost full recovery of axonal mass. The completion method was applied to three experimental data sets of reconstructed rat cortical L2/3 pyramidal neurons. The results showed that in 300 μm thick slices intracortical axons lost about 50% and dendrites about 16% of their mass. The completion method can be applied to single-slice reconstructions as long as axial symmetry can be assumed in the mass distribution. This opens up the possibility of using incomplete neuronal reconstructions from open-access data bases to determine population mean mass density fields
Efficient 3D movement-based kernel density estimator and application to wildlife ecology
Tracey-PR, Jeff; Sheppard, James K.; Lockwood, Glenn K.; Chourasia, Amit; Tatineni, Mahidhar; Fisher, Robert N.; Sinkovits, Robert S.
2014-01-01
We describe an efficient implementation of a 3D movement-based kernel density estimator for determining animal space use from discrete GPS measurements. This new method provides more accurate results, particularly for species that make large excursions in the vertical dimension. The downside of this approach is that it is much more computationally expensive than simpler, lower-dimensional models. Through a combination of code restructuring, parallelization and performance optimization, we were able to reduce the time to solution by up to a factor of 1000x, thereby greatly improving the applicability of the method.
mclust 5: Clustering, Classification and Density Estimation Using Gaussian Finite Mixture Models
Scrucca, Luca; Fop, Michael; Murphy, T. Brendan; Raftery, Adrian E.
2016-01-01
Finite mixture models are being used increasingly to model a wide variety of random phenomena for clustering, classification and density estimation. mclust is a powerful and popular package which allows modelling of data as a Gaussian finite mixture with different covariance structures and different numbers of mixture components, for a variety of purposes of analysis. Recently, version 5 of the package has been made available on CRAN. This updated version adds new covariance structures, dimension reduction capabilities for visualisation, model selection criteria, initialisation strategies for the EM algorithm, and bootstrap-based inference, making it a full-featured R package for data analysis via finite mixture modelling. PMID:27818791
NASA Astrophysics Data System (ADS)
Cui, Xiongwei; Yao, Xiongliang; Wang, Zhikai; Liu, Minghao
2017-03-01
A second generation wavelet-based adaptive finite-difference Lattice Boltzmann method (FD-LBM) is developed in this paper. In this approach, the adaptive wavelet collocation method (AWCM) is firstly, to the best of our knowledge, incorporated into the FD-LBM. According to the grid refinement criterion based on the wavelet amplitudes of density distribution functions, an adaptive sparse grid is generated by the omission and addition of collocation points. On the sparse grid, the finite differences are used to approximate the derivatives. To eliminate the special treatments in using the FD-based derivative approximation near boundaries, the immersed boundary method (IBM) is also introduced into FD-LBM. By using the adaptive technique, the adaptive code requires much less grid points as compared to the uniform-mesh code. As a consequence, the computational efficiency can be improved. To justify the proposed method, a series of test cases, including fixed boundary cases and moving boundary cases, are invested. A good agreement between the present results and the data in previous literatures is obtained, which demonstrates the accuracy and effectiveness of the present AWCM-IB-LBM.
Jun, Jae Kwan; Kim, Mi Jin; Choi, Kui Son; Suh, Mina; Jung, Kyu-Won
2012-01-01
Mammographic breast density is a known risk factor for breast cancer. To conduct a survey to estimate the distribution of mammographic breast density in Korean women, appropriate sampling strategies for representative and efficient sampling design were evaluated through simulation. Using the target population from the National Cancer Screening Programme (NCSP) for breast cancer in 2009, we verified the distribution estimate by repeating the simulation 1,000 times using stratified random sampling to investigate the distribution of breast density of 1,340,362 women. According to the simulation results, using a sampling design stratifying the nation into three groups (metropolitan, urban, and rural), with a total sample size of 4,000, we estimated the distribution of breast density in Korean women at a level of 0.01% tolerance. Based on the results of our study, a nationwide survey for estimating the distribution of mammographic breast density among Korean women can be conducted efficiently.
Liu, Huaie; Feng, Guohua; Zeng, Weilin; Li, Xiaomei; Bai, Yao; Deng, Shuang; Ruan, Yonghua; Morris, James; Li, Siman; Yang, Zhaoqing; Cui, Liwang
2016-04-01
The conventional method of estimating parasite densities employ an assumption of 8000 white blood cells (WBCs)/μl. However, due to leucopenia in malaria patients, this number appears to overestimate parasite densities. In this study, we assessed the accuracy of parasite density estimated using this assumed WBC count in eastern Myanmar, where Plasmodium vivax has become increasingly prevalent. From 256 patients with uncomplicated P. vivax malaria, we estimated parasite density and counted WBCs by using an automated blood cell counter. It was found that WBC counts were not significantly different between patients of different gender, axillary temperature, and body mass index levels, whereas they were significantly different between age groups of patients and the time points of measurement. The median parasite densities calculated with the actual WBC counts (1903/μl) and the assumed WBC count of 8000/μl (2570/μl) were significantly different. We demonstrated that using the assumed WBC count of 8000 cells/μl to estimate parasite densities of P. vivax malaria patients in this area would lead to an overestimation. For P. vivax patients aged five years and older, an assumed WBC count of 5500/μl best estimated parasite densities. This study provides more realistic assumed WBC counts for estimating parasite densities in P. vivax patients from low-endemicity areas of Southeast Asia.
Budka, Marcin; Gabrys, Bogdan
2013-01-01
Estimation of the generalization ability of a classification or regression model is an important issue, as it indicates the expected performance on previously unseen data and is also used for model selection. Currently used generalization error estimation procedures, such as cross-validation (CV) or bootstrap, are stochastic and, thus, require multiple repetitions in order to produce reliable results, which can be computationally expensive, if not prohibitive. The correntropy-inspired density-preserving sampling (DPS) procedure proposed in this paper eliminates the need for repeating the error estimation procedure by dividing the available data into subsets that are guaranteed to be representative of the input dataset. This allows the production of low-variance error estimates with an accuracy comparable to 10 times repeated CV at a fraction of the computations required by CV. This method can also be used for model ranking and selection. This paper derives the DPS procedure and investigates its usability and performance using a set of public benchmark datasets and standard classifiers.
Constrained Kalman Filtering Via Density Function Truncation for Turbofan Engine Health Estimation
NASA Technical Reports Server (NTRS)
Simon, Dan; Simon, Donald L.
2006-01-01
Kalman filters are often used to estimate the state variables of a dynamic system. However, in the application of Kalman filters some known signal information is often either ignored or dealt with heuristically. For instance, state variable constraints (which may be based on physical considerations) are often neglected because they do not fit easily into the structure of the Kalman filter. This paper develops an analytic method of incorporating state variable inequality constraints in the Kalman filter. The resultant filter truncates the PDF (probability density function) of the Kalman filter estimate at the known constraints and then computes the constrained filter estimate as the mean of the truncated PDF. The incorporation of state variable constraints increases the computational effort of the filter but significantly improves its estimation accuracy. The improvement is demonstrated via simulation results obtained from a turbofan engine model. The turbofan engine model contains 3 state variables, 11 measurements, and 10 component health parameters. It is also shown that the truncated Kalman filter may be a more accurate way of incorporating inequality constraints than other constrained filters (e.g., the projection approach to constrained filtering).
Density and Biomass Estimates by Removal for an Amazonian Crocodilian, Paleosuchus palpebrosus.
Campos, Zilca; Magnusson, William E
2016-01-01
Direct counts of crocodilians are rarely feasible and it is difficult to meet the assumptions of mark-recapture methods for most species in most habitats. Catch-out experiments are also usually not logistically or morally justifiable because it would be necessary to destroy the habitat in order to be confident that most individuals had been captured. We took advantage of the draining and filling of a large area of flooded forest during the building of the Santo Antônio dam on the Madeira River to obtain accurate estimates of the density and biomass of Paleosuchus palpebrosus. The density, 28.4 non-hatchling individuals per km2, is one of the highest reported for any crocodilian, except for species that are temporarily concentrated in small areas during dry-season drought. The biomass estimate of 63.15 kg*km-2 is higher than that for most or even all mammalian carnivores in tropical forest. P. palpebrosus may be one of the World´s most abundant crocodilians.
NASA Astrophysics Data System (ADS)
Strauss, Cesar; Rosa, Marcelo Barbio; Stephany, Stephan
2013-12-01
Convective cells are cloud formations whose growth, maturation and dissipation are of great interest among meteorologists since they are associated with severe storms with large precipitation structures. Some works suggest a strong correlation between lightning occurrence and convective cells. The current work proposes a new approach to analyze the correlation between precipitation and lightning, and to identify electrically active cells. Such cells may be employed for tracking convective events in the absence of weather radar coverage. This approach employs a new spatio-temporal clustering technique based on a temporal sliding-window and a standard kernel density estimation to process lightning data. Clustering allows the identification of the cells from lightning data and density estimation bounds the contours of the cells. The proposed approach was evaluated for two convective events in Southeast Brazil. Image segmentation of radar data was performed to identify convective precipitation structures using the Steiner criteria. These structures were then compared and correlated to the electrically active cells in particular instants of time for both events. It was observed that most precipitation structures have associated cells, by comparing the ground tracks of their centroids. In addition, for one particular cell of each event, its temporal evolution was compared to that of the associated precipitation structure. Results show that the proposed approach may improve the use of lightning data for tracking convective events in countries that lack weather radar coverage.
Density and Biomass Estimates by Removal for an Amazonian Crocodilian, Paleosuchus palpebrosus
2016-01-01
Direct counts of crocodilians are rarely feasible and it is difficult to meet the assumptions of mark-recapture methods for most species in most habitats. Catch-out experiments are also usually not logistically or morally justifiable because it would be necessary to destroy the habitat in order to be confident that most individuals had been captured. We took advantage of the draining and filling of a large area of flooded forest during the building of the Santo Antônio dam on the Madeira River to obtain accurate estimates of the density and biomass of Paleosuchus palpebrosus. The density, 28.4 non-hatchling individuals per km2, is one of the highest reported for any crocodilian, except for species that are temporarily concentrated in small areas during dry-season drought. The biomass estimate of 63.15 kg*km-2 is higher than that for most or even all mammalian carnivores in tropical forest. P. palpebrosus may be one of the World´s most abundant crocodilians. PMID:27224473
Error estimates for density-functional theory predictions of surface energy and work function
NASA Astrophysics Data System (ADS)
De Waele, Sam; Lejaeghere, Kurt; Sluydts, Michael; Cottenier, Stefaan
2016-12-01
Density-functional theory (DFT) predictions of materials properties are becoming ever more widespread. With increased use comes the demand for estimates of the accuracy of DFT results. In view of the importance of reliable surface properties, this work calculates surface energies and work functions for a large and diverse test set of crystalline solids. They are compared to experimental values by performing a linear regression, which results in a measure of the predictable and material-specific error of the theoretical result. Two of the most prevalent functionals, the local density approximation (LDA) and the Perdew-Burke-Ernzerhof parametrization of the generalized gradient approximation (PBE-GGA), are evaluated and compared. Both LDA and GGA-PBE are found to yield accurate work functions with error bars below 0.3 eV, rivaling the experimental precision. LDA also provides satisfactory estimates for the surface energy with error bars smaller than 10%, but GGA-PBE significantly underestimates the surface energy for materials with a large correlation energy.
Luo, Shezhou; Chen, Jing M; Wang, Cheng; Xi, Xiaohuan; Zeng, Hongcheng; Peng, Dailiang; Li, Dong
2016-05-30
Vegetation leaf area index (LAI), height, and aboveground biomass are key biophysical parameters. Corn is an important and globally distributed crop, and reliable estimations of these parameters are essential for corn yield forecasting, health monitoring and ecosystem modeling. Light Detection and Ranging (LiDAR) is considered an effective technology for estimating vegetation biophysical parameters. However, the estimation accuracies of these parameters are affected by multiple factors. In this study, we first estimated corn LAI, height and biomass (R^{2} = 0.80, 0.874 and 0.838, respectively) using the original LiDAR data (7.32 points/m^{2}), and the results showed that LiDAR data could accurately estimate these biophysical parameters. Second, comprehensive research was conducted on the effects of LiDAR point density, sampling size and height threshold on the estimation accuracy of LAI, height and biomass. Our findings indicated that LiDAR point density had an important effect on the estimation accuracy for vegetation biophysical parameters, however, high point density did not always produce highly accurate estimates, and reduced point density could deliver reasonable estimation results. Furthermore, the results showed that sampling size and height threshold were additional key factors that affect the estimation accuracy of biophysical parameters. Therefore, the optimal sampling size and the height threshold should be determined to improve the estimation accuracy of biophysical parameters. Our results also implied that a higher LiDAR point density, larger sampling size and height threshold were required to obtain accurate corn LAI estimation when compared with height and biomass estimations. In general, our results provide valuable guidance for LiDAR data acquisition and estimation of vegetation biophysical parameters using LiDAR data.
Accuracy of estimated geometric parameters of trees depending on the LIDAR data density
NASA Astrophysics Data System (ADS)
Hadas, Edyta; Estornell, Javier
2015-04-01
The estimation of dendrometric variables has become important for spatial planning and agriculture projects. Because classical field measurements are time consuming and inefficient, airborne LiDAR (Light Detection and Ranging) measurements are successfully used in this area. Point clouds acquired for relatively large areas allows to determine the structure of forestry and agriculture areas and geometrical parameters of individual trees. In this study two LiDAR datasets with different densities were used: sparse with average density of 0.5pt/m2 and the dense with density of 4pt/m2. 25 olive trees were selected and field measurements of tree height, crown bottom height, length of crown diameters and tree position were performed. To determine the tree geometric parameters from LiDAR data, two independent strategies were developed that utilize the ArcGIS, ENVI and FUSION software. Strategy a) was based on canopy surface model (CSM) slicing at 0.5m height and in strategy b) minimum bounding polygons as tree crown area were created around detected tree centroid. The individual steps were developed to be applied also in automatic processing. To assess the performance of each strategy with both point clouds, the differences between the measured and estimated geometric parameters of trees were analyzed. As expected, the tree height were underestimated for both strategies (RMSE=0.7m for dense dataset and RMSE=1.5m for sparse) and tree crown height were overestimated (RMSE=0.4m and RMSE=0.7m for dense and sparse dataset respectively). For dense dataset, strategy b) allows to determine more accurate crown diameters (RMSE=0.5m) than strategy a) (RMSE=0.8m), and for sparse dataset, only strategy a) occurs to be relevant (RMSE=1.0m). The accuracy of strategies were also examined for their dependency on tree size. For dense dataset, the larger the tree (height or crown longer diameter), the higher was the error of estimated tree height, and for sparse dataset, the larger the tree
Krucker, Saem; Raftery, Claire L.; Hudson, Hugh S.
2011-06-10
We report on Transition Region And Coronal Explorer 171 A observations of the GOES X20 class flare on 2001 April 2 that shows EUV flare ribbons with intense diffraction patterns. Between the 11th to 14th order, the diffraction patterns of the compact flare ribbon are dispersed into two sources. The two sources are identified as emission from the Fe IX line at 171.1 A and the combined emission from Fe X lines at 174.5, 175.3, and 177.2 A. The prominent emission of the Fe IX line indicates that the EUV-emitting ribbon has a strong temperature component near the lower end of the 171 A temperature response ({approx}0.6-1.5 MK). Fitting the observation with an isothermal model, the derived temperature is around 0.65 MK. However, the low sensitivity of the 171 A filter to high-temperature plasma does not provide estimates of the emission measure for temperatures above {approx}1.5 MK. Using the derived temperature of 0.65 MK, the observed 171 A flux gives a density of the EUV ribbon of 3 x 10{sup 11} cm{sup -3}. This density is much lower than the density of the hard X-ray producing region ({approx}10{sup 13} to 10{sup 14} cm{sup -3}) suggesting that the EUV sources, though closely related spatially, lie at higher altitudes.
NASA Astrophysics Data System (ADS)
Krucker, Säm; Raftery, Claire L.; Hudson, Hugh S.
2011-06-01
We report on Transition Region And Coronal Explorer 171 Å observations of the GOES X20 class flare on 2001 April 2 that shows EUV flare ribbons with intense diffraction patterns. Between the 11th to 14th order, the diffraction patterns of the compact flare ribbon are dispersed into two sources. The two sources are identified as emission from the Fe IX line at 171.1 Å and the combined emission from Fe X lines at 174.5, 175.3, and 177.2 Å. The prominent emission of the Fe IX line indicates that the EUV-emitting ribbon has a strong temperature component near the lower end of the 171 Å temperature response (~0.6-1.5 MK). Fitting the observation with an isothermal model, the derived temperature is around 0.65 MK. However, the low sensitivity of the 171 Å filter to high-temperature plasma does not provide estimates of the emission measure for temperatures above ~1.5 MK. Using the derived temperature of 0.65 MK, the observed 171 Å flux gives a density of the EUV ribbon of 3 × 1011 cm-3. This density is much lower than the density of the hard X-ray producing region (~1013 to 1014 cm-3) suggesting that the EUV sources, though closely related spatially, lie at higher altitudes.
NASA Astrophysics Data System (ADS)
Romano-Díaz, Emilio; van de Weygaert, Rien
2007-11-01
We apply the Delaunay Tessellation Field Estimator (DTFE) to reconstruct and analyse the matter distribution and cosmic velocity flows in the local Universe on the basis of the PSCz galaxy survey. The prime objective of this study is the production of optimal resolution 3D maps of the volume-weighted velocity and density fields throughout the nearby universe, the basis for a detailed study of the structure and dynamics of the cosmic web at each level probed by underlying galaxy sample. Fully volume-covering 3D maps of the density and (volume-weighted) velocity fields in the cosmic vicinity, out to a distance of 150h-1Mpc, are presented. Based on the Voronoi and Delaunay tessellation defined by the spatial galaxy sample, DTFE involves the estimate of density values on the basis of the volume of the related Delaunay tetrahedra and the subsequent use of the Delaunay tessellation as natural multidimensional (linear) interpolation grid for the corresponding density and velocity fields throughout the sample volume. The linearized model of the spatial galaxy distribution and the corresponding peculiar velocities of the PSCz galaxy sample, produced by Branchini et al., forms the input sample for the DTFE study. The DTFE maps reproduce the high-density supercluster regions in optimal detail, both their internal structure as well as their elongated or flattened shape. The corresponding velocity flows trace the bulk and shear flows marking the region extending from the Pisces-Perseus supercluster, via the Local Superclusters, towards the Hydra-Centaurus and the Shapley concentration. The most outstanding and unique feature of the DTFE maps is the sharply defined radial outflow regions in and around underdense voids, marking the dynamical importance of voids in the local Universe. The maximum expansion rate of voids defines a sharp cut-off in the DTFE velocity divergence probability distribution function. We found that on the basis of this cut-off DTFE manages to consistently
NASA Astrophysics Data System (ADS)
Cavuoti, S.; Amaro, V.; Brescia, M.; Vellucci, C.; Tortora, C.; Longo, G.
2017-02-01
A variety of fundamental astrophysical science topics require the determination of very accurate photometric redshifts (photo-z). A wide plethora of methods have been developed, based either on template models fitting or on empirical explorations of the photometric parameter space. Machine-learning-based techniques are not explicitly dependent on the physical priors and able to produce accurate photo-z estimations within the photometric ranges derived from the spectroscopic training set. These estimates, however, are not easy to characterize in terms of a photo-z probability density function (PDF), due to the fact that the analytical relation mapping the photometric parameters on to the redshift space is virtually unknown. We present METAPHOR (Machine-learning Estimation Tool for Accurate PHOtometric Redshifts), a method designed to provide a reliable PDF of the error distribution for empirical techniques. The method is implemented as a modular workflow, whose internal engine for photo-z estimation makes use of the MLPQNA neural network (Multi Layer Perceptron with Quasi Newton learning rule), with the possibility to easily replace the specific machine-learning model chosen to predict photo-z. We present a summary of results on SDSS-DR9 galaxy data, used also to perform a direct comparison with PDFs obtained by the LE PHARE spectral energy distribution template fitting. We show that METAPHOR is capable to estimate the precision and reliability of photometric redshifts obtained with three different self-adaptive techniques, i.e. MLPQNA, Random Forest and the standard K-Nearest Neighbors models.
NASA Astrophysics Data System (ADS)
Ohdachi, S.
2016-11-01
A new type of wavelet-based analysis for the magnetic fluctuations by which toroidal mode number can be resolved is proposed. By using a wavelet, having a different phase toroidally, a spectrogram with a specific toroidal mode number can be obtained. When this analysis is applied to the measurement of the fluctuations observed in the large helical device, MHD activities having similar frequency in the laboratory frame can be separated from the difference of the toroidal mode number. It is useful for the non-stationary MHD activity. This method is usable when the toroidal magnetic probes are not symmetrically distributed.
NASA Astrophysics Data System (ADS)
Cao, Yuan; He, Haibo; Man, Hong; Shen, Xiaoping
2009-09-01
This paper proposes an approach to integrate the self-organizing map (SOM) and kernel density estimation (KDE) techniques for the anomaly-based network intrusion detection (ABNID) system to monitor the network traffic and capture potential abnormal behaviors. With the continuous development of network technology, information security has become a major concern for the cyber system research. In the modern net-centric and tactical warfare networks, the situation is more critical to provide real-time protection for the availability, confidentiality, and integrity of the networked information. To this end, in this work we propose to explore the learning capabilities of SOM, and integrate it with KDE for the network intrusion detection. KDE is used to estimate the distributions of the observed random variables that describe the network system and determine whether the network traffic is normal or abnormal. Meanwhile, the learning and clustering capabilities of SOM are employed to obtain well-defined data clusters to reduce the computational cost of the KDE. The principle of learning in SOM is to self-organize the network of neurons to seek similar properties for certain input patterns. Therefore, SOM can form an approximation of the distribution of input space in a compact fashion, reduce the number of terms in a kernel density estimator, and thus improve the efficiency for the intrusion detection. We test the proposed algorithm over the real-world data sets obtained from the Integrated Network Based Ohio University's Network Detective Service (INBOUNDS) system to show the effectiveness and efficiency of this method.
Bayes and empirical Bayes estimators of abundance and density from spatial capture-recapture data
Dorazio, Robert M.
2013-01-01
In capture-recapture and mark-resight surveys, movements of individuals both within and between sampling periods can alter the susceptibility of individuals to detection over the region of sampling. In these circumstances spatially explicit capture-recapture (SECR) models, which incorporate the observed locations of individuals, allow population density and abundance to be estimated while accounting for differences in detectability of individuals. In this paper I propose two Bayesian SECR models, one for the analysis of recaptures observed in trapping arrays and another for the analysis of recaptures observed in area searches. In formulating these models I used distinct submodels to specify the distribution of individual home-range centers and the observable recaptures associated with these individuals. This separation of ecological and observational processes allowed me to derive a formal connection between Bayes and empirical Bayes estimators of population abundance that has not been established previously. I showed that this connection applies to every Poisson point-process model of SECR data and provides theoretical support for a previously proposed estimator of abundance based on recaptures in trapping arrays. To illustrate results of both classical and Bayesian methods of analysis, I compared Bayes and empirical Bayes esimates of abundance and density using recaptures from simulated and real populations of animals. Real populations included two iconic datasets: recaptures of tigers detected in camera-trap surveys and recaptures of lizards detected in area-search surveys. In the datasets I analyzed, classical and Bayesian methods provided similar – and often identical – inferences, which is not surprising given the sample sizes and the noninformative priors used in the analyses.
Bayes and empirical Bayes estimators of abundance and density from spatial capture-recapture data.
Dorazio, Robert M
2013-01-01
In capture-recapture and mark-resight surveys, movements of individuals both within and between sampling periods can alter the susceptibility of individuals to detection over the region of sampling. In these circumstances spatially explicit capture-recapture (SECR) models, which incorporate the observed locations of individuals, allow population density and abundance to be estimated while accounting for differences in detectability of individuals. In this paper I propose two Bayesian SECR models, one for the analysis of recaptures observed in trapping arrays and another for the analysis of recaptures observed in area searches. In formulating these models I used distinct submodels to specify the distribution of individual home-range centers and the observable recaptures associated with these individuals. This separation of ecological and observational processes allowed me to derive a formal connection between Bayes and empirical Bayes estimators of population abundance that has not been established previously. I showed that this connection applies to every Poisson point-process model of SECR data and provides theoretical support for a previously proposed estimator of abundance based on recaptures in trapping arrays. To illustrate results of both classical and Bayesian methods of analysis, I compared Bayes and empirical Bayes esimates of abundance and density using recaptures from simulated and real populations of animals. Real populations included two iconic datasets: recaptures of tigers detected in camera-trap surveys and recaptures of lizards detected in area-search surveys. In the datasets I analyzed, classical and Bayesian methods provided similar - and often identical - inferences, which is not surprising given the sample sizes and the noninformative priors used in the analyses.
Estimation of critical behavior from the density of states in classical statistical models.
Malakis, A; Peratzakis, A; Fytas, N G
2004-12-01
We present a simple and efficient approximation scheme which greatly facilitates the extension of Wang-Landau sampling (or similar techniques) in large systems for the estimation of critical behavior. The method, presented in an algorithmic approach, is based on a very simple idea, familiar in statistical mechanics from the notion of thermodynamic equivalence of ensembles and the central limit theorem. It is illustrated that we can predict with high accuracy the critical part of the energy space and by using this restricted part we can extend our simulations to larger systems and improve the accuracy of critical parameters. It is proposed that the extensions of the finite-size critical part of the energy space, determining the specific heat, satisfy a scaling law involving the thermal critical exponent. The method is applied successfully for the estimation of the scaling behavior of specific heat of both square and simple cubic Ising lattices. The proposed scaling law is verified by estimating the thermal critical exponent from the finite-size behavior of the critical part of the energy space. The density of states of the zero-field Ising model on these lattices is obtained via a multirange Wang-Landau sampling.
SAR amplitude probability density function estimation based on a generalized Gaussian model.
Moser, Gabriele; Zerubia, Josiane; Serpico, Sebastiano B
2006-06-01
In the context of remotely sensed data analysis, an important problem is the development of accurate models for the statistics of the pixel intensities. Focusing on synthetic aperture radar (SAR) data, this modeling process turns out to be a crucial task, for instance, for classification or for denoising purposes. In this paper, an innovative parametric estimation methodology for SAR amplitude data is proposed that adopts a generalized Gaussian (GG) model for the complex SAR backscattered signal. A closed-form expression for the corresponding amplitude probability density function (PDF) is derived and a specific parameter estimation algorithm is developed in order to deal with the proposed model. Specifically, the recently proposed "method-of-log-cumulants" (MoLC) is applied, which stems from the adoption of the Mellin transform (instead of the usual Fourier transform) in the computation of characteristic functions and from the corresponding generalization of the concepts of moment and cumulant. For the developed GG-based amplitude model, the resulting MoLC estimates turn out to be numerically feasible and are also analytically proved to be consistent. The proposed parametric approach was validated by using several real ERS-1, XSAR, E-SAR, and NASA/JPL airborne SAR images, and the experimental results prove that the method models the amplitude PDF better than several previously proposed parametric models for backscattering phenomena.
Hesse, Christian W
2007-01-01
Accurate estimates of the dimension and an (orthogonal) basis of the signal subspace of noise corrupted multi-channel measurements are essential for accurate identification and extraction of any signals of interest within that subspace. For most biomedical signals comprising very large numbers of channels, including the magnetoencephalogram (MEG), the "true" number of underlying signals ¿ although ultimately unknown ¿ is unlikely to be of the same order as the number of measurements, and has to be estimated from the available data. This work examines several second-order statistical approaches to signal subspace (dimension) estimation with respect to their underlying assumptions and their performance in high-dimensional measurement spaces using 151-channel MEG data. The purpose is to identify which of these methods might be most appropriate for modeling the signal subspace structure of high-density MEG data recorded under controlled conditions, and what are the practical consequences with regard to the subsequent application of biophysical modeling and statistical source separation techniques.
NASA Astrophysics Data System (ADS)
Erkyihun, S. T.
2013-12-01
Understanding streamflow variability and the ability to generate realistic scenarios at multi-decadal time scales is important for robust water resources planning and management in any River Basin - more so on the Colorado River Basin with its semi-arid climate and highly stressed water resources It is increasingly evident that large scale climate forcings such as El Nino Southern Oscillation (ENSO), Pacific Decadal Oscillation (PDO) and Atlantic Multi-decadal Oscillation (AMO) are known to modulate the Colorado River Basin hydrology at multi-decadal time scales. Thus, modeling these large scale Climate indicators is important to then conditionally modeling the multi-decadal streamflow variability. To this end, we developed a simulation model that combines the wavelet-based time series method, Wavelet Auto Regressive Moving Average (WARMA) with a K-nearest neighbor (K-NN) bootstrap approach. In this, for a given time series (climate forcings), dominant periodicities/frequency bands are identified from the wavelet spectrum that pass the 90% significant test. The time series is filtered at these frequencies in each band to create ';components'; the components are orthogonal and when added to the residual (i.e., noise) results in the original time series. The components, being smooth, are easily modeled using parsimonious Auto Regressive Moving Average (ARMA) time series models. The fitted ARMA models are used to simulate the individual components which are added to obtain simulation of the original series. The WARMA approach is applied to all the climate forcing indicators which are used to simulate multi-decadal sequences of these forcing. For the current year, the simulated forcings are considered the ';feature vector' and K-NN of this are identified; one of the neighbors (i.e., one of the historical year) is resampled using a weighted probability metric (with more weights to nearest neighbor and least to the farthest) and the corresponding streamflow is the
NASA Astrophysics Data System (ADS)
Lee, Jae-Ok; Moon, Y.-J.; Lee, Jin-Yi; Lee, Kyoung-Sun; Kim, R.-S.
2016-04-01
We determine coronal electron density distributions (CEDDs) by analyzing decahectometric (DH) type II observations under two assumptions. DH type II bursts are generated by either (1) shocks at the leading edges of coronal mass ejections (CMEs) or (2) CME shock-streamer interactions. Among 399 Wind/WAVES type II bursts (from 1997 to 2012) associated with SOHO/LASCO (Large Angle Spectroscopic COronagraph) CMEs, we select 11 limb events whose fundamental and second harmonic emission lanes are well identified. We determine the lowest frequencies of fundamental emission lanes and the heights of leading edges of their associated CMEs. We also determine the heights of CME shock-streamer interaction regions. The CEDDs are estimated by minimizing the root-mean-square error between the heights from the CME leading edges (or CME shock-streamer interaction regions) and DH type II bursts. We also estimate CEDDs of seven events using polarized brightness (pB) measurements. We find the following results. Under the first assumption, the average of estimated CEDDs from 3 to 20 Rs is about 5-fold Saito's model (NSaito(r)). Under the second assumption, the average of estimated CEDDs from 3 to 10 Rs is 1.5-fold NSaito(r). While the CEDDs obtained from pB measurements are significantly smaller than those based on the first assumption and CME flank regions without streamers, they are well consistent with those on the second assumption. Our results show that not only about 1-fold NSaito(r) is a proper CEDD for analyzing DH type II bursts but also CME shock-streamer interactions could be a plausible origin for generating DH type II bursts.
He,P.; Blaskiewicz, M.; Fischer, W.
2009-01-02
In this report we summarize electron-cloud simulations for the RHIC dipole regions at injection and transition to estimate if scrubbing over practical time scales at injection would reduce the electron cloud density at transition to significantly lower values. The lower electron cloud density at transition will allow for an increase in the ion intensity.
1984-10-01
and second Fr~ chet derivatives of 3(v) 1 n L(v) are given by (Tapia, 1971) n d I n(xi) n (1- d )I X I iv MxZ) ’-t)dt -2 < v,rn and n d 2. (X-n j~i (v)i...8217 first APLE; SurvivaZ e.t..a- tion; Random censor-hip; Nonparaet"c density estimation; Reliability. AB STRACT D Based on arbitrarily right-censored...functional 0: H(n) -I R. Given the arbitrarily right-censored sample (xi,dt), i11,2,... ,n, the #-penalized likelihood of v c H(n) is defined by %I n d
Proactive Uniform Data Replication by Density Estimation in Apollonian P2P Networks
NASA Astrophysics Data System (ADS)
Bonnel, Nicolas; Ménier, Gildas; Marteau, Pierre-François
We propose a data replication scheme on a random apollonian P2P overlay that benefits from the small world and scale free properties. The proposed algorithm features a replica density estimation and a space filling mechanism designed to avoid redundant messages. Not only it provides uniform replication of the data stored into the network but it also improves on classical flooding approaches by removing any redundancy. This last property is obtained at the cost of maintaining a random apollonian overlay. Thanks to the small world and scale free properties of the random apollonian P2P overlay, the search efficiency of the space filling tree algorithm we propose has comparable performances with the classical flooding algorithm on a random network.
Pascual-Marqui, R D; Gonzalez-Andino, S L; Valdes-Sosa, P A; Biscay-Lirio, R
1988-12-01
A method for the spatial analysis of EEG and EP data, based on the spherical harmonic Fourier expansion (SHE) of scalp potential measurements, is described. This model provides efficient and accurate formulas for: (1) the computation of the surface Laplacian and (2) the interpolation of electrical potentials, current source densities, test statistics and other derived variables. Physiologically based simulation experiments show that the SHE method gives better estimates of the surface Laplacian than the commonly used finite difference method. Cross-validation studies for the objective comparison of different interpolation methods demonstrate the superiority of the SHE over the commonly used methods based on the weighted (inverse distance) average of the nearest three and four neighbor values.
Current-source density analysis of slow brain potentials during time estimation.
Gibbons, Henning; Rammsayer, Thomas H
2004-11-01
Two event-related potential studies were conducted to investigate differential brain correlates of temporal processing of intervals below and above 3-4 s. In the first experiment, 24 participants were presented with auditorily marked target durations of 2, 4, and 6 s that had to be reproduced. Timing accuracy was similar for all three target durations. As revealed by current-source density analysis, slow-wave components during both presentation and reproduction were independent of target duration. Experiment 2 examined potential modulating effects of type of interval (filled and empty) and presentation mode (randomized and blocked presentation of target durations). Behavioral and slow-wave findings were consistent with those of Experiment 1. Thus, the present findings support the notion of a general timing mechanism irrespective of interval duration as proposed by scalar timing theory and pacemaker-counter models of time estimation.
NASA Astrophysics Data System (ADS)
Zhang, Xin; Zhang, Haijiang
2015-10-01
It has been a challenge to image velocity changes in real time by seismic travel time tomography. If more seismic events are included in the tomographic system, the inverted velocity models do not have necessary time resolution to resolve velocity changes. But if fewer events are used for real-time tomography, the system is less stable and the inverted model may contain some artifacts, and thus, resolved velocity changes may not be real. To mitigate these issues, we propose a wavelet-based time-dependent double-difference (DD) tomography method. The new method combines the multiscale property of wavelet representation and the fast converging property of the simultaneous algebraic reconstruction technique to solve the velocity models at multiple scales for sequential time segments. We first test the new method using synthetic data constructed using real event and station distribution for Mount Etna volcano in Italy. Then we show its effectiveness to determine velocity changes for the 2001 and 2002 eruptions of Mount Etna volcano. Compared to standard DD tomography that uses seismic events from a longer time period, wavelet-based time-dependent tomography better resolves velocity changes that may be caused by fracture closure and opening as well as fluid migration before and after volcano eruptions.
NASA Astrophysics Data System (ADS)
Semler, Lindsay; Dettori, Lucia
The research presented in this article is aimed at developing an automated imaging system for classification of tissues in medical images obtained from Computed Tomography (CT) scans. The article focuses on using multi-resolution texture analysis, specifically: the Haar wavelet, Daubechies wavelet, Coiflet wavelet, and the ridgelet. The algorithm consists of two steps: automatic extraction of the most discriminative texture features of regions of interest and creation of a classifier that automatically identifies the various tissues. The classification step is implemented using a cross-validation Classification and Regression Tree approach. A comparison of wavelet-based and ridgelet-based algorithms is presented. Tests on a large set of chest and abdomen CT images indicate that, among the three wavelet-based algorithms, the one using texture features derived from the Haar wavelet transform clearly outperforms the one based on Daubechies and Coiflet transform. The tests also show that the ridgelet-based algorithm is significantly more effective and that texture features based on the ridgelet transform are better suited for texture classification in CT medical images.
Gur, Sourav; Frantziskonis, George N.; Univ. of Arizona, Tucson, AZ; ...
2017-02-16
Here, we report results from a numerical study of multi-time-scale bistable dynamics for CO oxidation on a catalytic surface in a flowing, well-mixed gas stream. The problem is posed in terms of surface and gas-phase submodels that dynamically interact in the presence of stochastic perturbations, reflecting the impact of molecular-scale fluctuations on the surface and turbulence in the gas. Wavelet-based methods are used to encode and characterize the temporal dynamics produced by each submodel and detect the onset of sudden state shifts (bifurcations) caused by nonlinear kinetics. When impending state shifts are detected, a more accurate but computationally expensive integrationmore » scheme can be used. This appears to make it possible, at least in some cases, to decrease the net computational burden associated with simulating multi-time-scale, nonlinear reacting systems by limiting the amount of time in which the more expensive integration schemes are required. Critical to achieving this is being able to detect unstable temporal transitions such as the bistable shifts in the example problem considered here. Lastly, our results indicate that a unique wavelet-based algorithm based on the Lipschitz exponent is capable of making such detections, even under noisy conditions, and may find applications in critical transition detection problems beyond catalysis.« less
Dos Santos, Alessio Moreira; Mitja, Danielle; Delaître, Eric; Demagistri, Laurent; de Souza Miranda, Izildinha; Libourel, Thérèse; Petit, Michel
2017-05-15
High spatial resolution images as well as image processing and object detection algorithms are recent technologies that aid the study of biodiversity and commercial plantations of forest species. This paper seeks to contribute knowledge regarding the use of these technologies by studying randomly dispersed native palm tree. Here, we analyze the automatic detection of large circular crown (LCC) palm tree using a high spatial resolution panchromatic GeoEye image (0.50 m) taken on the area of a community of small agricultural farms in the Brazilian Amazon. We also propose auxiliary methods to estimate the density of the LCC palm tree Attalea speciosa (babassu) based on the detection results. We used the "Compt-palm" algorithm based on the detection of palm tree shadows in open areas via mathematical morphology techniques and the spatial information was validated using field methods (i.e. structural census and georeferencing). The algorithm recognized individuals in life stages 5 and 6, and the extraction percentage, branching factor and quality percentage factors were used to evaluate its performance. A principal components analysis showed that the structure of the studied species differs from other species. Approximately 96% of the babassu individuals in stage 6 were detected. These individuals had significantly smaller stipes than the undetected ones. In turn, 60% of the stage 5 babassu individuals were detected, showing significantly a different total height and a different number of leaves from the undetected ones. Our calculations regarding resource availability indicate that 6870 ha contained 25,015 adult babassu palm tree, with an annual potential productivity of 27.4 t of almond oil. The detection of LCC palm tree and the implementation of auxiliary field methods to estimate babassu density is an important first step to monitor this industry resource that is extremely important to the Brazilian economy and thousands of families over a large scale.
Volcanic explosion clouds - Density, temperature, and particle content estimates from cloud motion
NASA Technical Reports Server (NTRS)
Wilson, L.; Self, S.
1980-01-01
Photographic records of 10 vulcanian eruption clouds produced during the 1978 eruption of Fuego Volcano in Guatemala have been analyzed to determine cloud velocity and acceleration at successive stages of expansion. Cloud motion is controlled by air drag (dominant during early, high-speed motion) and buoyancy (dominant during late motion when the cloud is convecting slowly). Cloud densities in the range 0.6 to 1.2 times that of the surrounding atmosphere were obtained by fitting equations of motion for two common cloud shapes (spheres and vertical cylinders) to the observed motions. Analysis of the heat budget of a cloud permits an estimate of cloud temperature and particle weight fraction to be made from the density. Model results suggest that clouds generally reached temperatures within 10 K of that of the surrounding air within 10 seconds of formation and that dense particle weight fractions were less than 2% by this time. The maximum sizes of dense particles supported by motion in the convecting clouds range from 140 to 1700 microns.
Density estimates of Panamanian owl monkeys (Aotus zonalis) in three habitat types.
Svensson, Magdalena S; Samudio, Rafael; Bearder, Simon K; Nekaris, K Anne-Isola
2010-02-01
The resolution of the ambiguity surrounding the taxonomy of Aotus means data on newly classified species are urgently needed for conservation efforts. We conducted a study on the Panamanian owl monkey (Aotus zonalis) between May and July 2008 at three localities in Chagres National Park, located east of the Panama Canal, using the line transect method to quantify abundance and distribution. Vegetation surveys were also conducted to provide a baseline quantification of the three habitat types. We observed 33 individuals within 16 groups in two out of the three sites. Population density was highest in Campo Chagres with 19.7 individuals/km(2) and intermediate densities of 14.3 individuals/km(2) were observed at Cerro Azul. In la Llana A. zonalis was not found to be present. The presence of A. zonalis in Chagres National Park, albeit at seemingly low abundance, is encouraging. A longer-term study will be necessary to validate the further abundance estimates gained in this pilot study in order to make conservation policy decisions.
NASA Astrophysics Data System (ADS)
Lussana, C.
2013-04-01
The presented work focuses on the investigation of gridded daily minimum (TN) and maximum (TX) temperature probability density functions (PDFs) with the intent of both characterising a region and detecting extreme values. The empirical PDFs estimation procedure has been realised using the most recent years of gridded temperature analysis fields available at ARPA Lombardia, in Northern Italy. The spatial interpolation is based on an implementation of Optimal Interpolation using observations from a dense surface network of automated weather stations. An effort has been made to identify both the time period and the spatial areas with a stable data density otherwise the elaboration could be influenced by the unsettled station distribution. The PDF used in this study is based on the Gaussian distribution, nevertheless it is designed to have an asymmetrical (skewed) shape in order to enable distinction between warming and cooling events. Once properly defined the occurrence of extreme events, it is possible to straightforwardly deliver to the users the information on a local-scale in a concise way, such as: TX extremely cold/hot or TN extremely cold/hot.
Can we estimate plasma density in ICP driver through electrical parameters in RF circuit?
Bandyopadhyay, M. Sudhir, Dass Chakraborty, A.
2015-04-08
To avoid regular maintenance, invasive plasma diagnostics with probes are not included in the inductively coupled plasma (ICP) based ITER Neutral Beam (NB) source design. Even non-invasive probes like optical emission spectroscopic diagnostics are also not included in the present ITER NB design due to overall system design and interface issues. As a result, negative ion beam current through the extraction system in the ITER NB negative ion source is the only measurement which indicates plasma condition inside the ion source. However, beam current not only depends on the plasma condition near the extraction region but also on the perveance condition of the ion extractor system and negative ion stripping. Nevertheless, inductively coupled plasma production region (RF driver region) is placed at distance (∼ 30cm) from the extraction region. Due to that, some uncertainties are expected to be involved if one tries to link beam current with plasma properties inside the RF driver. Plasma characterization in source RF driver region is utmost necessary to maintain the optimum condition for source operation. In this paper, a method of plasma density estimation is described, based on density dependent plasma load calculation.
Kamousi, Baharan; Amini, Ali Nasiri; He, Bin
2007-06-01
The goal of the present study is to employ the source imaging methods such as cortical current density estimation for the classification of left- and right-hand motor imagery tasks, which may be used for brain-computer interface (BCI) applications. The scalp recorded EEG was first preprocessed by surface Laplacian filtering, time-frequency filtering, noise normalization and independent component analysis. Then the cortical imaging technique was used to solve the EEG inverse problem. Cortical current density distributions of left and right trials were classified from each other by exploiting the concept of Von Neumann entropy. The proposed method was tested on three human subjects (180 trials each) and a maximum accuracy of 91.5% and an average accuracy of 88% were obtained. The present results confirm the hypothesis that source analysis methods may improve accuracy for classification of motor imagery tasks. The present promising results using source analysis for classification of motor imagery enhances our ability of performing source analysis from single trial EEG data recorded on the scalp, and may have applications to improved BCI systems.
Density estimation in aerial images of large crowds for automatic people counting
NASA Astrophysics Data System (ADS)
Herrmann, Christian; Metzler, Juergen
2013-05-01
Counting people is a common topic in the area of visual surveillance and crowd analysis. While many image-based solutions are designed to count only a few persons at the same time, like pedestrians entering a shop or watching an advertisement, there is hardly any solution for counting large crowds of several hundred persons or more. We addressed this problem previously by designing a semi-automatic system being able to count crowds consisting of hundreds or thousands of people based on aerial images of demonstrations or similar events. This system requires major user interaction to segment the image. Our principle aim is to reduce this manual interaction. To achieve this, we propose a new and automatic system. Besides counting the people in large crowds, the system yields the positions of people allowing a plausibility check by a human operator. In order to automatize the people counting system, we use crowd density estimation. The determination of crowd density is based on several features like edge intensity or spatial frequency. They indicate the density and discriminate between a crowd and other image regions like buildings, bushes or trees. We compare the performance of our automatic system to the previous semi-automatic system and to manual counting in images. By counting a test set of aerial images showing large crowds containing up to 12,000 people, the performance gain of our new system will be measured. By improving our previous system, we will increase the benefit of an image-based solution for counting people in large crowds.
Robust estimation of mammographic breast density: a patient-based approach
NASA Astrophysics Data System (ADS)
Heese, Harald S.; Erhard, Klaus; Gooßen, Andre; Bulow, Thomas
2012-02-01
Breast density has become an established risk indicator for developing breast cancer. Current clinical practice reflects this by grading mammograms patient-wise as entirely fat, scattered fibroglandular, heterogeneously dense, or extremely dense based on visual perception. Existing (semi-) automated methods work on a per-image basis and mimic clinical practice by calculating an area fraction of fibroglandular tissue (mammographic percent density). We suggest a method that follows clinical practice more strictly by segmenting the fibroglandular tissue portion directly from the joint data of all four available mammographic views (cranio-caudal and medio-lateral oblique, left and right), and by subsequently calculating a consistently patient-based mammographic percent density estimate. In particular, each mammographic view is first processed separately to determine a region of interest (ROI) for segmentation into fibroglandular and adipose tissue. ROI determination includes breast outline detection via edge-based methods, peripheral tissue suppression via geometric breast height modeling, and - for medio-lateral oblique views only - pectoral muscle outline detection based on optimizing a three-parameter analytic curve with respect to local appearance. Intensity harmonization based on separately acquired calibration data is performed with respect to compression height and tube voltage to facilitate joint segmentation of available mammographic views. A Gaussian mixture model (GMM) on the joint histogram data with a posteriori calibration guided plausibility correction is finally employed for tissue separation. The proposed method was tested on patient data from 82 subjects. Results show excellent correlation (r = 0.86) to radiologist's grading with deviations ranging between -28%, (q = 0.025) and +16%, (q = 0.975).
NASA Astrophysics Data System (ADS)
Rastigejev, Y.; Semakin, A. N.
2013-12-01
Accurate numerical simulations of global scale three-dimensional atmospheric chemical transport models (CTMs) are essential for studies of many important atmospheric chemistry problems such as adverse effect of air pollutants on human health, ecosystems and the Earth's climate. These simulations usually require large CPU time due to numerical difficulties associated with a wide range of spatial and temporal scales, nonlinearity and large number of reacting species. In our previous work we have shown that in order to achieve adequate convergence rate and accuracy, the mesh spacing in numerical simulation of global synoptic-scale pollution plume transport must be decreased to a few kilometers. This resolution is difficult to achieve for global CTMs on uniform or quasi-uniform grids. To address the described above difficulty we developed a three-dimensional Wavelet-based Adaptive Mesh Refinement (WAMR) algorithm. The method employs a highly non-uniform adaptive grid with fine resolution over the areas of interest without requiring small grid-spacing throughout the entire domain. The method uses multi-grid iterative solver that naturally takes advantage of a multilevel structure of the adaptive grid. In order to represent the multilevel adaptive grid efficiently, a dynamic data structure based on indirect memory addressing has been developed. The data structure allows rapid access to individual points, fast inter-grid operations and re-gridding. The WAMR method has been implemented on parallel computer architectures. The parallel algorithm is based on run-time partitioning and load-balancing scheme for the adaptive grid. The partitioning scheme maintains locality to reduce communications between computing nodes. The parallel scheme was found to be cost-effective. Specifically we obtained an order of magnitude increase in computational speed for numerical simulations performed on a twelve-core single processor workstation. We have applied the WAMR method for numerical
TME12/400: Application Oriented Wavelet-based Coding of Volumetric Medical Data
Menegaz, G; Grewe, L; Lozano, A; Thiran, J-Ph
1999-01-01
Introduction While medical data are increasingly acquired in a multidimensional space, in clinical practice they are mainly still analyzed as images. We propose a wavelet-based coding technique exploiting the full dimensionality of the data distribution while allowing to recover a single image without any need to decode the whole volume. The proposed compression scheme is based on the Layered Zero Coding (LZC) method. Two modes are considered. In the progressive (PROG) mode, the volume is processed as a whole, while in the layer-per-layer (LPL) one each layer of each sub-band is encoded independently. The three-dimensional extension of the Embedded Zerotree Wavelet (EZW) coder is used as reference for coding efficiency. All working modalities provide a fully embedded bit-stream allowing a progressive by quality recovering of the encoded information. Methods The 3D DWT is performed mapping integers to integers thus allowing lossless compression. Two different coding systems have been considered: EZW and LZC. LZC models the expected statistical dependencies among coefficients by defining some conditional terms (contexts) which summarize the significance state of the samples belonging to a generalized neighborhood of the coefficient being encoded. Such terms are then used by a context adaptive arithmetic coder. The LPL mode has been designed in order to be able to independently decode any image of the dataset, and it is derived from the PROG mode by over-constraining the system. The sub-bands are quantized and encoded according to a sequence of uniform quantizers with decreasing step-size. This ensures progressiveness capabilities when decoding both the whole volume and a single image. Results Performances have been evaluated on two datasets: DSR and ANGIO, an opthalmologic angiographic sequence. For each mode the best context has been retained. Results show that the proposed system is competitive with EZW, and PROG mode is the more performant. The main factors
Methods for Estimating Environmental Effects and Constraints on NexGen: High Density Case Study
NASA Technical Reports Server (NTRS)
Augustine, S.; Ermatinger, C.; Graham, M.; Thompson, T.
2010-01-01
This document provides a summary of the current methods developed by Metron Aviation for the estimate of environmental effects and constraints on the Next Generation Air Transportation System (NextGen). This body of work incorporates many of the key elements necessary to achieve such an estimate. Each section contains the background and motivation for the technical elements of the work, a description of the methods used, and possible next steps. The current methods described in this document were selected in an attempt to provide a good balance between accuracy and fairly rapid turn around times to best advance Joint Planning and Development Office (JPDO) System Modeling and Analysis Division (SMAD) objectives while also supporting the needs of the JPDO Environmental Working Group (EWG). In particular this document describes methods applied to support the High Density (HD) Case Study performed during the spring of 2008. A reference day (in 2006) is modeled to describe current system capabilities while the future demand is applied to multiple alternatives to analyze system performance. The major variables in the alternatives are operational/procedural capabilities for airport, terminal, and en route airspace along with projected improvements to airframe, engine and navigational equipment.
Pettersen, Klas H; Hagen, Espen; Einevoll, Gaute T
2008-06-01
This model study investigates the validity of methods used to interpret linear (laminar) multielectrode recordings. In computer experiments extracellular potentials from a synaptically activated population of about 1,000 pyramidal neurons are calculated using biologically realistic compartmental neuron models combined with electrostatic forward modeling. The somas of the pyramidal neurons are located in a 0.4 mm high and wide columnar cylinder, mimicking a stimulus-evoked layer-5 population in a neocortical column. Current-source density (CSD) analysis of the low-frequency part (<500 Hz) of the calculated potentials (local field potentials, LFP) based on the 'inverse' CSD method is, in contrast to the 'standard' CSD method, seen to give excellent estimates of the true underlying CSD. The high-frequency part (>750 Hz) of the potentials (multi-unit activity, MUA) is found to scale approximately as the population firing rate to the power 3/4 and to give excellent estimates of the underlying population firing rate for trial-averaged data. The MUA signal is found to decay much more sharply outside the columnar populations than the LFP.
Estimating the mass of Saturn's B ring
NASA Astrophysics Data System (ADS)
Hedman, Matthew M.; Nicholson, Philip D.
2016-10-01
The B ring is the brightest and most opaque of Saturn's rings, but it is also amongst the least well understood because basic parameters like its surface mass density have been poorly constrained. Elsewhere in the rings, spiral density waves driven by resonances with Saturn's various moons provide precise and robust mass density estimates, but for most the B ring extremely high opacities and strong stochastic optical depth variations obscure the signal from these wave patterns. We have developed a new wavelet-based technique that combines data from multiple stellar occultations (observed by the Visual and Infrared Mapping Spectrometer instrument onboard the Cassini spacecraft) that has allowed us to identify signals that appear to be due to waves generated by the strongest resonances in the central and outer B ring. These wave signatures yield new estimates of the B-ring's mass density and indicate that the B-ring's total mass could be quite low, between 1/3 and 2/3 the mass of Saturn's moon Mimas.
Lee, Sooyeul; Jeong, Ji-Wook; Lee, Jeong Won; Yoo, Done-Sik; Kim, Seunghwan
2006-01-01
Osteoporosis is characterized by an abnormal loss of bone mineral content, which leads to a tendency to non-traumatic bone fractures or to structural deformations of bone. Thus, bone density measurement has been considered as a most reliable method to assess bone fracture risk due to osteoporosis. In past decades, X-ray images have been studied in connection with the bone mineral density estimation. However, the estimated bone mineral density from the X-ray image can undergo a relatively large accuracy or precision error. The most relevant origin of the accuracy or precision error may be unstable X-ray image acquisition condition. Thus, we focus our attentions on finding a bone mineral density estimation method that is relatively insensitive to the X-ray image acquisition condition. In this paper, we develop a simple technique for distal radius bone mineral density estimation using the trabecular bone filling factor in the X-ray image and apply the technique to the wrist X-ray images of 20 women. Estimated bone mineral density shows a high linear correlation with a dual-energy X-ray absorptiometry (r=0.87).
Using kernel density estimation to understand the influence of neighbourhood destinations on BMI
King, Tania L; Bentley, Rebecca J; Thornton, Lukar E; Kavanagh, Anne M
2016-01-01
Objectives Little is known about how the distribution of destinations in the local neighbourhood is related to body mass index (BMI). Kernel density estimation (KDE) is a spatial analysis technique that accounts for the location of features relative to each other. Using KDE, this study investigated whether individuals living near destinations (shops and service facilities) that are more intensely distributed rather than dispersed, have lower BMIs. Study design and setting A cross-sectional study of 2349 residents of 50 urban areas in metropolitan Melbourne, Australia. Methods Destinations were geocoded, and kernel density estimates of destination intensity were created using kernels of 400, 800 and 1200 m. Using multilevel linear regression, the association between destination intensity (classified in quintiles Q1(least)–Q5(most)) and BMI was estimated in models that adjusted for the following confounders: age, sex, country of birth, education, dominant household occupation, household type, disability/injury and area disadvantage. Separate models included a physical activity variable. Results For kernels of 800 and 1200 m, there was an inverse relationship between BMI and more intensely distributed destinations (compared to areas with least destination intensity). Effects were significant at 1200 m: Q4, β −0.86, 95% CI −1.58 to −0.13, p=0.022; Q5, β −1.03 95% CI −1.65 to −0.41, p=0.001. Inclusion of physical activity in the models attenuated effects, although effects remained marginally significant for Q5 at 1200 m: β −0.77 95% CI −1.52, −0.02, p=0.045. Conclusions This study conducted within urban Melbourne, Australia, found that participants living in areas of greater destination intensity within 1200 m of home had lower BMIs. Effects were partly explained by physical activity. The results suggest that increasing the intensity of destination distribution could reduce BMI levels by encouraging higher levels of physical activity
NASA Astrophysics Data System (ADS)
Zeng, L.; Doyle, E. J.; Rhodes, T. L.; Wang, G.; Sung, C.; Peebles, W. A.; Bobrek, M.
2016-11-01
A new model-based technique for fast estimation of the pedestal electron density gradient has been developed. The technique uses ordinary mode polarization profile reflectometer time delay data and does not require direct profile inversion. Because of its simple data processing, the technique can be readily implemented via a Field-Programmable Gate Array, so as to provide a real-time density gradient estimate, suitable for use in plasma control systems such as envisioned for ITER, and possibly for DIII-D and Experimental Advanced Superconducting Tokamak. The method is based on a simple edge plasma model with a linear pedestal density gradient and low scrape-off-layer density. By measuring reflectometer time delays for three adjacent frequencies, the pedestal density gradient can be estimated analytically via the new approach. Using existing DIII-D profile reflectometer data, the estimated density gradients obtained from the new technique are found to be in good agreement with the actual density gradients for a number of dynamic DIII-D plasma conditions.
Cusack, Jeremy J; Swanson, Alexandra; Coulson, Tim; Packer, Craig; Carbone, Chris; Dickman, Amy J; Kosmala, Margaret; Lintott, Chris; Rowcliffe, J Marcus
2015-08-01
The random encounter model (REM) is a novel method for estimating animal density from camera trap data without the need for individual recognition. It has never been used to estimate the density of large carnivore species, despite these being the focus of most camera trap studies worldwide. In this context, we applied the REM to estimate the density of female lions (Panthera leo) from camera traps implemented in Serengeti National Park, Tanzania, comparing estimates to reference values derived from pride census data. More specifically, we attempted to account for bias resulting from non-random camera placement at lion resting sites under isolated trees by comparing estimates derived from night versus day photographs, between dry and wet seasons, and between habitats that differ in their amount of tree cover. Overall, we recorded 169 and 163 independent photographic events of female lions from 7,608 and 12,137 camera trap days carried out in the dry season of 2010 and the wet season of 2011, respectively. Although all REM models considered over-estimated female lion density, models that considered only night-time events resulted in estimates that were much less biased relative to those based on all photographic events. We conclude that restricting REM estimation to periods and habitats in which animal movement is more likely to be random with respect to cameras can help reduce bias in estimates of density for female Serengeti lions. We highlight that accurate REM estimates will nonetheless be dependent on reliable measures of average speed of animal movement and camera detection zone dimensions. © 2015 The Authors. Journal of Wildlife Management published by Wiley Periodicals, Inc. on behalf of The Wildlife Society.
Cusack, Jeremy J; Swanson, Alexandra; Coulson, Tim; Packer, Craig; Carbone, Chris; Dickman, Amy J; Kosmala, Margaret; Lintott, Chris; Rowcliffe, J Marcus
2015-01-01
The random encounter model (REM) is a novel method for estimating animal density from camera trap data without the need for individual recognition. It has never been used to estimate the density of large carnivore species, despite these being the focus of most camera trap studies worldwide. In this context, we applied the REM to estimate the density of female lions (Panthera leo) from camera traps implemented in Serengeti National Park, Tanzania, comparing estimates to reference values derived from pride census data. More specifically, we attempted to account for bias resulting from non-random camera placement at lion resting sites under isolated trees by comparing estimates derived from night versus day photographs, between dry and wet seasons, and between habitats that differ in their amount of tree cover. Overall, we recorded 169 and 163 independent photographic events of female lions from 7,608 and 12,137 camera trap days carried out in the dry season of 2010 and the wet season of 2011, respectively. Although all REM models considered over-estimated female lion density, models that considered only night-time events resulted in estimates that were much less biased relative to those based on all photographic events. We conclude that restricting REM estimation to periods and habitats in which animal movement is more likely to be random with respect to cameras can help reduce bias in estimates of density for female Serengeti lions. We highlight that accurate REM estimates will nonetheless be dependent on reliable measures of average speed of animal movement and camera detection zone dimensions. © 2015 The Authors. Journal of Wildlife Management published by Wiley Periodicals, Inc. on behalf of The Wildlife Society. PMID:26640297
On L p -Resolvent Estimates and the Density of Eigenvalues for Compact Riemannian Manifolds
NASA Astrophysics Data System (ADS)
Bourgain, Jean; Shao, Peng; Sogge, Christopher D.; Yao, Xiaohua
2015-02-01
in Geom Funct Anal 21:1239-1295, 2011) based on the multilinear estimates of Bennett, Carbery and Tao (Math Z 2:261-302, 2006). Our approach also allows us to give a natural necessary condition for favorable resolvent estimates that is based on a measurement of the density of the spectrum of , and, moreover, a necessary and sufficient condition based on natural improved spectral projection estimates for shrinking intervals, as opposed to those in (Sogge in J Funct Anal 77:123-138, 1988) for unit-length intervals. We show that the resolvent estimates are sensitive to clustering within the spectrum, which is not surprising given Sommerfeld's original conjecture (Sommerfeld in Physikal Zeitschr 11:1057-1066, 1910) about these operators.
2015-09-30
Develop and implement methods for estimating detection probability of vocalizations based on bearing and source level data from sparse array elements...deep sound channel allows for call bearing and, in some cases where the vocalizing animal is close, localization (Harris 2012; Samaran et al., 2010...instruments. It is anticipated that bearings and received levels of a large number of calls can be estimated. We plan to use these data, coupled with
NASA Astrophysics Data System (ADS)
Kurita, Yutaka; Kjesbu, Olav S.
2009-02-01
This paper explores why the 'Auto-diametric method', currently used in many laboratories to quickly estimate fish fecundity, works well on marine species with a determinate reproductive style but much less so on species with an indeterminate reproductive style. Algorithms describing links between potentially important explanatory variables to estimate fecundity were first established, and these were followed by practical observations in order to validate the method under two extreme situations: 1) straightforward fecundity estimation in a determinate, single-batch spawner: Atlantic herring (AH) Clupea harengus and 2) challenging fecundity estimation in an indeterminate, multiple-batch spawner: Japanese flounder (JF) Paralichthys olivaceus. The Auto-diametric method relies on the successful prediction of the number of vitellogenic oocytes (VTO) per gram ovary (oocyte packing density; OPD) from the mean VTO diameter. Theoretically, OPD could be reproduced by the following four variables; OD V (volume-based mean VTO diameter, which deviates from arithmetic mean VTO diameter), VFvto (volume fraction of VTO in the ovary), ρo (specific gravity of the ovary) and k (VTO shape, i.e. ratio of long and short oocyte axes). VF vto, ρ o and k were tested in relation to growth in OD V. The dynamic range throughout maturation was clearly highest in VF vto. As a result, OPD was mainly influenced by OD V and secondly by VFvto. Log (OPD) for AH decreased as log (OD V) increased, while log (OPD) for JF first increased during early vitellogenesis, then decreased during late vitellogenesis and spawning as log (OD V) increased. These linear regressions thus behaved statistically differently between species, and associated residuals fluctuated more for JF than for AH. We conclude that the OPD-OD V relationship may be better expressed by several curves that cover different parts of the maturation cycle rather than by one curve that cover all these parts. This seems to be particularly
Optical Density Analysis of X-Rays Utilizing Calibration Tooling to Estimate Thickness of Parts
NASA Technical Reports Server (NTRS)
Grau, David
2012-01-01
This process is designed to estimate the thickness change of a material through data analysis of a digitized version of an x-ray (or a digital x-ray) containing the material (with the thickness in question) and various tooling. Using this process, it is possible to estimate a material's thickness change in a region of the material or part that is thinner than the rest of the reference thickness. However, that same principle process can be used to determine the thickness change of material using a thinner region to determine thickening, or it can be used to develop contour plots of an entire part. Proper tooling must be used. An x-ray film with an S-shaped characteristic curve or a digital x-ray device with a product resulting in like characteristics is necessary. If a film exists with linear characteristics, this type of film would be ideal; however, at the time of this reporting, no such film has been known. Machined components (with known fractional thicknesses) of a like material (similar density) to that of the material to be measured are necessary. The machined components should have machined through-holes. For ease of use and better accuracy, the throughholes should be a size larger than 0.125 in. (.3 mm). Standard components for this use are known as penetrameters or image quality indicators. Also needed is standard x-ray equipment, if film is used in place of digital equipment, or x-ray digitization equipment with proven conversion properties. Typical x-ray digitization equipment is commonly used in the medical industry, and creates digital images of x-rays in DICOM format. It is recommended to scan the image in a 16-bit format. However, 12-bit and 8-bit resolutions are acceptable. Finally, x-ray analysis software that allows accurate digital image density calculations, such as Image-J freeware, is needed. The actual procedure requires the test article to be placed on the raw x-ray, ensuring the region of interest is aligned for perpendicular x-ray exposure
Anderson, Weston; Guikema, Seth; Zaitchik, Ben; Pan, William
2014-01-01
Obtaining accurate small area estimates of population is essential for policy and health planning but is often difficult in countries with limited data. In lieu of available population data, small area estimate models draw information from previous time periods or from similar areas. This study focuses on model-based methods for estimating population when no direct samples are available in the area of interest. To explore the efficacy of tree-based models for estimating population density, we compare six different model structures including Random Forest and Bayesian Additive Regression Trees. Results demonstrate that without information from prior time periods, non-parametric tree-based models produced more accurate predictions than did conventional regression methods. Improving estimates of population density in non-sampled areas is important for regions with incomplete census data and has implications for economic, health and development policies.
Anderson, Weston; Guikema, Seth; Zaitchik, Ben; Pan, William
2014-01-01
Obtaining accurate small area estimates of population is essential for policy and health planning but is often difficult in countries with limited data. In lieu of available population data, small area estimate models draw information from previous time periods or from similar areas. This study focuses on model-based methods for estimating population when no direct samples are available in the area of interest. To explore the efficacy of tree-based models for estimating population density, we compare six different model structures including Random Forest and Bayesian Additive Regression Trees. Results demonstrate that without information from prior time periods, non-parametric tree-based models produced more accurate predictions than did conventional regression methods. Improving estimates of population density in non-sampled areas is important for regions with incomplete census data and has implications for economic, health and development policies. PMID:24992657
Modeling and Density Estimation of an Urban Freeway Network Based on Dynamic Graph Hybrid Automata.
Chen, Yangzhou; Guo, Yuqi; Wang, Ying
2017-03-29
In this paper, in order to describe complex network systems, we firstly propose a general modeling framework by combining a dynamic graph with hybrid automata and thus name it Dynamic Graph Hybrid Automata (DGHA). Then we apply this framework to model traffic flow over an urban freeway network by embedding the Cell Transmission Model (CTM) into the DGHA. With a modeling procedure, we adopt a dual digraph of road network structure to describe the road topology, use linear hybrid automata to describe multi-modes of dynamic densities in road segments and transform the nonlinear expressions of the transmitted traffic flow between two road segments into piecewise linear functions in terms of multi-mode switchings. This modeling procedure is modularized and rule-based, and thus is easily-extensible with the help of a combination algorithm for the dynamics of traffic flow. It can describe the dynamics of traffic flow over an urban freeway network with arbitrary topology structures and sizes. Next we analyze mode types and number in the model of the whole freeway network, and deduce a Piecewise Affine Linear System (PWALS) model. Furthermore, based on the PWALS model, a multi-mode switched state observer is designed to estimate the traffic densities of the freeway network, where a set of observer gain matrices are computed by using the Lyapunov function approach. As an example, we utilize the PWALS model and the corresponding switched state observer to traffic flow over Beijing third ring road. In order to clearly interpret the principle of the proposed method and avoid computational complexity, we adopt a simplified version of Beijing third ring road. Practical application for a large-scale road network will be implemented by decentralized modeling approach and distributed observer designing in the future research.
Wang, Ying; Wu, Fengchang; Giesy, John P; Feng, Chenglian; Liu, Yuedan; Qin, Ning; Zhao, Yujie
2015-09-01
Due to use of different parametric models for establishing species sensitivity distributions (SSDs), comparison of water quality criteria (WQC) for metals of the same group or period in the periodic table is uncertain and results can be biased. To address this inadequacy, a new probabilistic model, based on non-parametric kernel density estimation was developed and optimal bandwidths and testing methods are proposed. Zinc (Zn), cadmium (Cd), and mercury (Hg) of group IIB of the periodic table are widespread in aquatic environments, mostly at small concentrations, but can exert detrimental effects on aquatic life and human health. With these metals as target compounds, the non-parametric kernel density estimation method and several conventional parametric density estimation methods were used to derive acute WQC of metals for protection of aquatic species in China that were compared and contrasted with WQC for other jurisdictions. HC5 values for protection of different types of species were derived for three metals by use of non-parametric kernel density estimation. The newly developed probabilistic model was superior to conventional parametric density estimations for constructing SSDs and for deriving WQC for these metals. HC5 values for the three metals were inversely proportional to atomic number, which means that the heavier atoms were more potent toxicants. The proposed method provides a novel alternative approach for developing SSDs that could have wide application prospects in deriving WQC and use in assessment of risks to ecosystems.
Markedly divergent estimates of Amazon forest carbon density from ground plots and satellites
Mitchard, Edward T A; Feldpausch, Ted R; Brienen, Roel J W; Lopez-Gonzalez, Gabriela; Monteagudo, Abel; Baker, Timothy R; Lewis, Simon L; Lloyd, Jon; Quesada, Carlos A; Gloor, Manuel; ter Steege, Hans; Meir, Patrick; Alvarez, Esteban; Araujo-Murakami, Alejandro; Aragão, Luiz E O C; Arroyo, Luzmila; Aymard, Gerardo; Banki, Olaf; Bonal, Damien; Brown, Sandra; Brown, Foster I; Cerón, Carlos E; Chama Moscoso, Victor; Chave, Jerome; Comiskey, James A; Cornejo, Fernando; Corrales Medina, Massiel; Da Costa, Lola; Costa, Flavia R C; Di Fiore, Anthony; Domingues, Tomas F; Erwin, Terry L; Frederickson, Todd; Higuchi, Niro; Honorio Coronado, Euridice N; Killeen, Tim J; Laurance, William F; Levis, Carolina; Magnusson, William E; Marimon, Beatriz S; Marimon Junior, Ben Hur; Mendoza Polo, Irina; Mishra, Piyush; Nascimento, Marcelo T; Neill, David; Núñez Vargas, Mario P; Palacios, Walter A; Parada, Alexander; Pardo Molina, Guido; Peña-Claros, Marielos; Pitman, Nigel; Peres, Carlos A; Poorter, Lourens; Prieto, Adriana; Ramirez-Angulo, Hirma; Restrepo Correa, Zorayda; Roopsind, Anand; Roucoux, Katherine H; Rudas, Agustin; Salomão, Rafael P; Schietti, Juliana; Silveira, Marcos; de Souza, Priscila F; Steininger, Marc K; Stropp, Juliana; Terborgh, John; Thomas, Raquel; Toledo, Marisol; Torres-Lezama, Armando; van Andel, Tinde R; van der Heijden, Geertje M F; Vieira, Ima C G; Vieira, Simone; Vilanova-Torre, Emilio; Vos, Vincent A; Wang, Ophelia; Zartman, Charles E; Malhi, Yadvinder; Phillips, Oliver L
2014-01-01
Aim The accurate mapping of forest carbon stocks is essential for understanding the global carbon cycle, for assessing emissions from deforestation, and for rational land-use planning. Remote sensing (RS) is currently the key tool for this purpose, but RS does not estimate vegetation biomass directly, and thus may miss significant spatial variations in forest structure. We test the stated accuracy of pantropical carbon maps using a large independent field dataset. Location Tropical forests of the Amazon basin. The permanent archive of the field plot data can be accessed at: http://dx.doi.org/10.5521/FORESTPLOTS.NET/2014_1 Methods Two recent pantropical RS maps of vegetation carbon are compared to a unique ground-plot dataset, involving tree measurements in 413 large inventory plots located in nine countries. The RS maps were compared directly to field plots, and kriging of the field data was used to allow area-based comparisons. Results The two RS carbon maps fail to capture the main gradient in Amazon forest carbon detected using 413 ground plots, from the densely wooded tall forests of the north-east, to the light-wooded, shorter forests of the south-west. The differences between plots and RS maps far exceed the uncertainties given in these studies, with whole regions over- or under-estimated by > 25%, whereas regional uncertainties for the maps were reported to be < 5%. Main conclusions Pantropical biomass maps are widely used by governments and by projects aiming to reduce deforestation using carbon offsets, but may have significant regional biases. Carbon-mapping techniques must be revised to account for the known ecological variation in tree wood density and allometry to create maps suitable for carbon accounting. The use of single relationships between tree canopy height and above-ground biomass inevitably yields large, spatially correlated errors. This presents a significant challenge to both the forest conservation and remote sensing communities
Brown, S; Gaston, G
1995-01-01
One of the most important databases needed for estimating emissions of carbon dioxide resulting from changes in the cover, use, and management of tropical forests is the total quantity of biomass per unit area, referred to as biomass density. Forest inventories have been shown to be valuable sources of data for estimating biomass density, but inventories for the tropics are few in number and their quality is poor. This lack of reliable data has been overcome by use of a promising approach that produces geographically referenced estimates by modeling in a geographic information system (GIS). This approach has been used to produce geographically referenced, spatial distributions of potential and actual (circa 1980) aboveground biomass density of all forests types in tropical Africa. Potential and actual biomass density estimates ranged from 33 to 412 Mg ha(-1) (10(6)g ha(-1)) and 20 to 299 Mg ha(-1), respectively, for very dry lowland to moist lowland forests and from 78 to 197 Mg ha(-1) and 37 to 105 Mg ha(-1), respectively, for montane-seasonal to montane-moist forests. Of the 37 countries included in this study, more than half (51%) contained forests that had less than 60% of their potential biomass. Actual biomass density for forest vegetation was lowest in Botswana, Niger, Somalia, and Zimbabwe (about 10 to 15 Mg ha(-1)). Highest estimates for actual biomass density were found in Congo, Equatorial Guinea, Gabon, and Liberia (305 to 344 Mg ha(-1)). Results from this research effort can contribute to reducing uncertainty in the inventory of country-level emission by providing consistent estimates of biomass density at subnational scales that can be used with other similarly scaled databases on change in land cover and use.
Jennelle, C.S.; Runge, M.C.; MacKenzie, D.I.
2002-01-01
The search for easy-to-use indices that substitute for direct estimation of animal density is a common theme in wildlife and conservation science, but one fraught with well-known perils (Nichols & Conroy, 1996; Yoccoz, Nichols & Boulinier, 2001; Pollock et al., 2002). To establish the utility of an index as a substitute for an estimate of density, one must: (1) demonstrate a functional relationship between the index and density that is invariant over the desired scope of inference; (2) calibrate the functional relationship by obtaining independent measures of the index and the animal density; (3) evaluate the precision of the calibration (Diefenbach et al., 1994). Carbone et al. (2001) argue that the number of camera-days per photograph is a useful index of density for large, cryptic, forest-dwelling animals, and proceed to calibrate this index for tigers (Panthera tigris). We agree that a properly calibrated index may be useful for rapid assessments in conservation planning. However, Carbone et al. (2001), who desire to use their index as a substitute for density, do not adequately address the three elements noted above. Thus, we are concerned that others may view their methods as justification for not attempting directly to estimate animal densities, without due regard for the shortcomings of their approach.
Population Densities of Rhizobium japonicum Strain 123 Estimated Directly in Soil and Rhizospheres †
Reyes, V. G.; Schmidt, E. L.
1979-01-01
Rhizobium japonicum serotype 123 was enumerated in soil and rhizospheres by fluorescent antibody techniques. Counting efficiency was estimated to be about 30%. Indigenous populations of strain 123 ranged from a few hundred to a few thousand per gram of field soil before planting. Rhizosphere effects from field-grown soybean plants were modest, reaching a maximum of about 2 × 104 cells of strain 123 per g of inner rhizosphere soil in young (16-day-old) plants. Comparably slight rhizosphere stimulation was observed with field corn. High populations of strain 123 (2 × 106 to 3 × 106 cells per g) were found only in the disintegrating taproot rhizospheres of mature soybeans at harvest, and these populations declined rapidly after harvest. Pot experiments with the same soil provided data similar to those derived from the field experiments. Populations of strain 123 reached a maximum of about 105 cells per g of soybean rhizosphere soil, but most values were lower and were only slightly higher than values in wheat rhizosphere soil. Nitrogen treatments had little effect on strain 123 densities in legume and nonlegume rhizospheres or on the nodulation success of strain 123. No evidence was obtained for the widely accepted theory of specific stimulation, which has been proposed to account for the initiation of the Rhizobium-legume symbiosis. PMID:16345383
Dictionary-based probability density function estimation for high-resolution SAR data
NASA Astrophysics Data System (ADS)
Krylov, Vladimir; Moser, Gabriele; Serpico, Sebastiano B.; Zerubia, Josiane
2009-02-01
In the context of remotely sensed data analysis, a crucial problem is represented by the need to develop accurate models for the statistics of pixel intensities. In this work, we develop a parametric finite mixture model for the statistics of pixel intensities in high resolution synthetic aperture radar (SAR) images. This method is an extension of previously existing method for lower resolution images. The method integrates the stochastic expectation maximization (SEM) scheme and the method of log-cumulants (MoLC) with an automatic technique to select, for each mixture component, an optimal parametric model taken from a predefined dictionary of parametric probability density functions (pdf). The proposed dictionary consists of eight state-of-the-art SAR-specific pdfs: Nakagami, log-normal, generalized Gaussian Rayleigh, Heavy-tailed Rayleigh, Weibull, K-root, Fisher and generalized Gamma. The designed scheme is endowed with the novel initialization procedure and the algorithm to automatically estimate the optimal number of mixture components. The experimental results with a set of several high resolution COSMO-SkyMed images demonstrate the high accuracy of the designed algorithm, both from the viewpoint of a visual comparison of the histograms, and from the viewpoint of quantitive accuracy measures such as correlation coefficient (above 99,5%). The method proves to be effective on all the considered images, remaining accurate for multimodal and highly heterogeneous scenes.
Novelty detection by multivariate kernel density estimation and growing neural gas algorithm
NASA Astrophysics Data System (ADS)
Fink, Olga; Zio, Enrico; Weidmann, Ulrich
2015-01-01
One of the underlying assumptions when using data-based methods for pattern recognition in diagnostics or prognostics is that the selected data sample used to train and test the algorithm is representative of the entire dataset and covers all combinations of parameters and conditions, and resulting system states. However in practice, operating and environmental conditions may change, unexpected and previously unanticipated events may occur and corresponding new anomalous patterns develop. Therefore for practical applications, techniques are required to detect novelties in patterns and give confidence to the user on the validity of the performed diagnosis and predictions. In this paper, the application of two types of novelty detection approaches is compared: a statistical approach based on multivariate kernel density estimation and an approach based on a type of unsupervised artificial neural network, called the growing neural gas (GNG). The comparison is performed on a case study in the field of railway turnout systems. Both approaches demonstrate their suitability for detecting novel patterns. Furthermore, GNG proves to be more flexible, especially with respect to dimensionality of the input data and suitability for online learning.
Measuring and Modeling Fault Density for Plume-Fault Encounter Probability Estimation
Jordan, P.D.; Oldenburg, C.M.; Nicot, J.-P.
2011-05-15
Emission of carbon dioxide from fossil-fueled power generation stations contributes to global climate change. Storage of this carbon dioxide within the pores of geologic strata (geologic carbon storage) is one approach to mitigating the climate change that would otherwise occur. The large storage volume needed for this mitigation requires injection into brine-filled pore space in reservoir strata overlain by cap rocks. One of the main concerns of storage in such rocks is leakage via faults. In the early stages of site selection, site-specific fault coverages are often not available. This necessitates a method for using available fault data to develop an estimate of the likelihood of injected carbon dioxide encountering and migrating up a fault, primarily due to buoyancy. Fault population statistics provide one of the main inputs to calculate the encounter probability. Previous fault population statistics work is shown to be applicable to areal fault density statistics. This result is applied to a case study in the southern portion of the San Joaquin Basin with the result that the probability of a carbon dioxide plume from a previously planned injection had a 3% chance of encountering a fully seal offsetting fault.
Chan, Poh Yin; Tong, Chi Ming; Durrant, Marcus C
2011-09-01
An empirical method for estimation of the boiling points of organic molecules based on density functional theory (DFT) calculations with polarized continuum model (PCM) solvent corrections has been developed. The boiling points are calculated as the sum of three contributions. The first term is calculated directly from the structural formula of the molecule, and is related to its effective surface area. The second is a measure of the electronic interactions between molecules, based on the DFT-PCM solvation energy, and the third is employed only for planar aromatic molecules. The method is applicable to a very diverse range of organic molecules, with normal boiling points in the range of -50 to 500 °C, and includes ten different elements (C, H, Br, Cl, F, N, O, P, S and Si). Plots of observed versus calculated boiling points gave R²=0.980 for a training set of 317 molecules, and R²=0.979 for a test set of 74 molecules. The role of intramolecular hydrogen bonding in lowering the boiling points of certain molecules is quantitatively discussed.
NASA Astrophysics Data System (ADS)
Nishimura, Takahiro; Kimura, Hitoshi; Ogura, Yusuke; Tanida, Jun
2016-11-01
In this paper, we propose a fluorescence encoded super resolution technique based on an estimation algorithm to determine locations of high-density fluorescence emitters. In our method, several types of fluorescence coded probes are employed to reduce densities of target molecules labeled with individual codes. By applying an estimation algorithm to each coded image, the locations of the high density probes can be determined. Due to multiplexed fluorescence imaging, this approach will provide fast super resolution microscopy. In experiments, we evaluated the performance of the method using probes with different fluorescence wavelengths. Numerical simulation results show that the locations of probes with the density of 200 μ m^{-2} , which is a typical membrane-receptor expression level, are determined with acquisition of 16 different coded images.
NASA Astrophysics Data System (ADS)
Zamani, Ahmad; Kolahi Azar, Amir; Safavi, Ali
2014-06-01
This paper presents a wavelet-based multifractal approach to characterize the statistical properties of temporal distribution of the 1982-2012 seismic activity in Mammoth Mountain volcano. The fractal analysis of time-occurrence series of seismicity has been carried out in relation to seismic swarm in association with magmatic intrusion happening beneath the volcano on 4 May 1989. We used the wavelet transform modulus maxima based multifractal formalism to get the multifractal characteristics of seismicity before, during, and after the unrest. The results revealed that the earthquake sequences across the study area show time-scaling features. It is clearly perceived that the multifractal characteristics are not constant in different periods and there are differences among the seismicity sequences. The attributes of singularity spectrum have been utilized to determine the complexity of seismicity for each period. Findings show that the temporal distribution of earthquakes for swarm period was simpler with respect to pre- and post-swarm periods.
NASA Astrophysics Data System (ADS)
Sondhiya, Deepak Kumar; Gwal, Ashok Kumar; Verma, Shivali; Kasde, Satish Kumar
Abstract: In this paper, a wavelet-based neural network system for the detection and identification of four types of VLF whistler’s transients (i.e. dispersive, diffuse, spiky and multipath) is implemented and tested. The discrete wavelet transform (DWT) technique is integrated with the feed forward neural network (FFNN) model to construct the identifier. First, the multi-resolution analysis (MRA) technique of DWT and the Parseval’s theorem are employed to extract the characteristics features of the transients at different resolution levels. Second, the FFNN identifies these extracted features to identify the transients according to the features extracted. The proposed methodology can reduce a great quantity of the features of transients without losing its original property; less memory space and computing time are required. Various transient events are tested; the results show that the identifier can detect whistler transients efficiently. Keywords: Discrete wavelets transform, Multi-resolution analysis, Parseval’s theorem and Feed forward neural network
A wavelet-based evaluation of time-varying long memory of equity markets: A paradigm in crisis
NASA Astrophysics Data System (ADS)
Tan, Pei P.; Chin, Cheong W.; Galagedera, Don U. A.
2014-09-01
This study, using wavelet-based method investigates the dynamics of long memory in the returns and volatility of equity markets. In the sample of five developed and five emerging markets we find that the daily return series from January 1988 to June 2013 may be considered as a mix of weak long memory and mean-reverting processes. In the case of volatility in the returns, there is evidence of long memory, which is stronger in emerging markets than in developed markets. We find that although the long memory parameter may vary during crisis periods (1997 Asian financial crisis, 2001 US recession and 2008 subprime crisis) the direction of change may not be consistent across all equity markets. The degree of return predictability is likely to diminish during crisis periods. Robustness of the results is checked with de-trended fluctuation analysis approach.
Maglogiannis, Ilias; Doukas, Charalampos; Kormentzas, George; Pliakas, Thomas
2009-07-01
Most of the commercial medical image viewers do not provide scalability in image compression and/or region of interest (ROI) encoding/decoding. Furthermore, these viewers do not take into consideration the special requirements and needs of a heterogeneous radio setting that is constituted by different access technologies [e.g., general packet radio services (GPRS)/ universal mobile telecommunications system (UMTS), wireless local area network (WLAN), and digital video broadcasting (DVB-H)]. This paper discusses a medical application that contains a viewer for digital imaging and communications in medicine (DICOM) images as a core module. The proposed application enables scalable wavelet-based compression, retrieval, and decompression of DICOM medical images and also supports ROI coding/decoding. Furthermore, the presented application is appropriate for use by mobile devices activating in heterogeneous radio settings. In this context, performance issues regarding the usage of the proposed application in the case of a prototype heterogeneous system setup are also discussed.
NASA Technical Reports Server (NTRS)
Matic, Roy M.; Mosley, Judith I.
1994-01-01
Future space-based, remote sensing systems will have data transmission requirements that exceed available downlinks necessitating the use of lossy compression techniques for multispectral data. In this paper, we describe several algorithms for lossy compression of multispectral data which combine spectral decorrelation techniques with an adaptive, wavelet-based, image compression algorithm to exploit both spectral and spatial correlation. We compare the performance of several different spectral decorrelation techniques including wavelet transformation in the spectral dimension. The performance of each technique is evaluated at compression ratios ranging from 4:1 to 16:1. Performance measures used are visual examination, conventional distortion measures, and multispectral classification results. We also introduce a family of distortion metrics that are designed to quantify and predict the effect of compression artifacts on multi spectral classification of the reconstructed data.
Hearn, Andrew J; Ross, Joanna; Bernard, Henry; Bakar, Soffian Abu; Hunter, Luke T B; Macdonald, David W
2016-01-01
The marbled cat Pardofelis marmorata is a poorly known wild cat that has a broad distribution across much of the Indomalayan ecorealm. This felid is thought to exist at low population densities throughout its range, yet no estimates of its abundance exist, hampering assessment of its conservation status. To investigate the distribution and abundance of marbled cats we conducted intensive, felid-focused camera trap surveys of eight forest areas and two oil palm plantations in Sabah, Malaysian Borneo. Study sites were broadly representative of the range of habitat types and the gradient of anthropogenic disturbance and fragmentation present in contemporary Sabah. We recorded marbled cats from all forest study areas apart from a small, relatively isolated forest patch, although photographic detection frequency varied greatly between areas. No marbled cats were recorded within the plantations, but a single individual was recorded walking along the forest/plantation boundary. We collected sufficient numbers of marbled cat photographic captures at three study areas to permit density estimation based on spatially explicit capture-recapture analyses. Estimates of population density from the primary, lowland Danum Valley Conservation Area and primary upland, Tawau Hills Park, were 19.57 (SD: 8.36) and 7.10 (SD: 1.90) individuals per 100 km2, respectively, and the selectively logged, lowland Tabin Wildlife Reserve yielded an estimated density of 10.45 (SD: 3.38) individuals per 100 km2. The low detection frequencies recorded in our other survey sites and from published studies elsewhere in its range, and the absence of previous density estimates for this felid suggest that our density estimates may be from the higher end of their abundance spectrum. We provide recommendations for future marbled cat survey approaches.
Hearn, Andrew J.; Ross, Joanna; Bernard, Henry; Bakar, Soffian Abu; Hunter, Luke T. B.; Macdonald, David W.
2016-01-01
The marbled cat Pardofelis marmorata is a poorly known wild cat that has a broad distribution across much of the Indomalayan ecorealm. This felid is thought to exist at low population densities throughout its range, yet no estimates of its abundance exist, hampering assessment of its conservation status. To investigate the distribution and abundance of marbled cats we conducted intensive, felid-focused camera trap surveys of eight forest areas and two oil palm plantations in Sabah, Malaysian Borneo. Study sites were broadly representative of the range of habitat types and the gradient of anthropogenic disturbance and fragmentation present in contemporary Sabah. We recorded marbled cats from all forest study areas apart from a small, relatively isolated forest patch, although photographic detection frequency varied greatly between areas. No marbled cats were recorded within the plantations, but a single individual was recorded walking along the forest/plantation boundary. We collected sufficient numbers of marbled cat photographic captures at three study areas to permit density estimation based on spatially explicit capture-recapture analyses. Estimates of population density from the primary, lowland Danum Valley Conservation Area and primary upland, Tawau Hills Park, were 19.57 (SD: 8.36) and 7.10 (SD: 1.90) individuals per 100 km2, respectively, and the selectively logged, lowland Tabin Wildlife Reserve yielded an estimated density of 10.45 (SD: 3.38) individuals per 100 km2. The low detection frequencies recorded in our other survey sites and from published studies elsewhere in its range, and the absence of previous density estimates for this felid suggest that our density estimates may be from the higher end of their abundance spectrum. We provide recommendations for future marbled cat survey approaches. PMID:27007219
NASA Astrophysics Data System (ADS)
Trenkel, Verena M.; Lorance, Pascal
2011-01-01
Kaup's arrowtooth eel Synaphobranchus kaupii is a small-bodied fish and an abundant inhabitant of the European continental slope. To estimate its local density video information using the remotely operated vehicle (ROV) Victor 6000 were collected at three locations in the Bay of Biscay slope. Two methods for estimating local densities were tested: strip transect counts and bait experiments. For bait experiments three behaviour types were observed in about equal proportions for individuals arriving near the seafloor: moving up the current towards the ROV, moving across the current and drifting with the current. Visible attraction towards the bait was the highest for individuals swimming against the current (80%) and about equally low for the other two types (around 30%); it did not depend on current speed nor temperature. Three main innovations were introduced for estimating population densities from bait experiments: (i) inclusion of an additional behaviour category—that of passively drifting individuals, (ii) inclusion of reaction behaviour for actively swimming individuals and (iii) a hierarchical Bayesian estimation framework. The results indicated that about half of individuals were foraging actively of which less than one third reacted on encountering the bait plume and the other half were drifting with the current. Taking account of drifting individuals and the reaction probability made density estimates from bait experiments and strip transects more similar.
Karanth, K.Ullas; Chundawat, Raghunandan S.; Nichols, James D.; Kumar, N. Samba
2004-01-01
Tropical dry-deciduous forests comprise more than 45% of the tiger (Panthera tigris) habitat in India. However, in the absence of rigorously derived estimates of ecological densities of tigers in dry forests, critical baseline data for managing tiger populations are lacking. In this study tiger densities were estimated using photographic capture–recapture sampling in the dry forests of Panna Tiger Reserve in Central India. Over a 45-day survey period, 60 camera trap sites were sampled in a well-protected part of the 542-km2 reserve during 2002. A total sampling effort of 914 camera-trap-days yielded photo-captures of 11 individual tigers over 15 sampling occasions that effectively covered a 418-km2 area. The closed capture–recapture model Mh, which incorporates individual heterogeneity in capture probabilities, fitted these photographic capture history data well. The estimated capture probability/sample, p̂= 0.04, resulted in an estimated tiger population size and standard error (N̂(SÊN̂)) of 29 (9.65), and a density (D̂(SÊD̂)) of 6.94 (3.23) tigers/100 km2. The estimated tiger density matched predictions based on prey abundance. Our results suggest that, if managed appropriately, the available dry forest habitat in India has the potential to support a population size of about 9000 wild tigers.
Kernel Density Estimation, Kernel Methods, and Fast Learning in Large Data Sets.
Wang, Shitong; Wang, Jun; Chung, Fu-lai
2014-01-01
Kernel methods such as the standard support vector machine and support vector regression trainings take O(N(3)) time and O(N(2)) space complexities in their naïve implementations, where N is the training set size. It is thus computationally infeasible in applying them to large data sets, and a replacement of the naive method for finding the quadratic programming (QP) solutions is highly desirable. By observing that many kernel methods can be linked up with kernel density estimate (KDE) which can be efficiently implemented by some approximation techniques, a new learning method called fast KDE (FastKDE) is proposed to scale up kernel methods. It is based on establishing a connection between KDE and the QP problems formulated for kernel methods using an entropy-based integrated-squared-error criterion. As a result, FastKDE approximation methods can be applied to solve these QP problems. In this paper, the latest advance in fast data reduction via KDE is exploited. With just a simple sampling strategy, the resulted FastKDE method can be used to scale up various kernel methods with a theoretical guarantee that their performance does not degrade a lot. It has a time complexity of O(m(3)) where m is the number of the data points sampled from the training set. Experiments on different benchmarking data sets demonstrate that the proposed method has comparable performance with the state-of-art method and it is effective for a wide range of kernel methods to achieve fast learning in large data sets.
NASA Astrophysics Data System (ADS)
Siirila, E. R.; Fernandez-Garcia, D.; Sanchez-Vila, X.
2014-12-01
Particle tracking (PT) techniques, often considered favorable over Eulerian techniques due to artificial smoothening in breakthrough curves (BTCs), are evaluated in a risk-driven framework. Recent work has shown that given a relatively few number of particles (np), PT methods can yield well-constructed BTCs with kernel density estimators (KDEs). This work compares KDE and non-KDE BTCs simulated as a function of np (102-108) and averaged as a function of the exposure duration, ED. Results show that regardless of BTC shape complexity, un-averaged PT BTCs show a large bias over several orders of magnitude in concentration (C) when compared to the KDE results, remarkably even when np is as low as 102. With the KDE, several orders of magnitude less np are required to obtain the same global error in BTC shape as the PT technique. PT and KDE BTCs are averaged as a function of the ED with standard and new methods incorporating the optimal h (ANA). The lowest error curve is obtained through the ANA method, especially for smaller EDs. Percent error of peak of averaged-BTCs, important in a risk framework, is approximately zero for all scenarios and all methods for np ≥105, but vary between the ANA and PT methods, when np is lower. For fewer np, the ANA solution provides a lower error fit except when C oscillations are present during a short time frame. We show that obtaining a representative average exposure concentration is reliant on an accurate representation of the BTC, especially when data is scarce.
Hall, S. A.; Burke, I.C.; Box, D. O.; Kaufmann, M. R.; Stoker, Jason M.
2005-01-01
The ponderosa pine forests of the Colorado Front Range, USA, have historically been subjected to wildfires. Recent large burns have increased public interest in fire behavior and effects, and scientific interest in the carbon consequences of wildfires. Remote sensing techniques can provide spatially explicit estimates of stand structural characteristics. Some of these characteristics can be used as inputs to fire behavior models, increasing our understanding of the effect of fuels on fire behavior. Others provide estimates of carbon stocks, allowing us to quantify the carbon consequences of fire. Our objective was to use discrete-return lidar to estimate such variables, including stand height, total aboveground biomass, foliage biomass, basal area, tree density, canopy base height and canopy bulk density. We developed 39 metrics from the lidar data, and used them in limited combinations in regression models, which we fit to field estimates of the stand structural variables. We used an information–theoretic approach to select the best model for each variable, and to select the subset of lidar metrics with most predictive potential. Observed versus predicted values of stand structure variables were highly correlated, with r2 ranging from 57% to 87%. The most parsimonious linear models for the biomass structure variables, based on a restricted dataset, explained between 35% and 58% of the observed variability. Our results provide us with useful estimates of stand height, total aboveground biomass, foliage biomass and basal area. There is promise for using this sensor to estimate tree density, canopy base height and canopy bulk density, though more research is needed to generate robust relationships. We selected 14 lidar metrics that showed the most potential as predictors of stand structure. We suggest that the focus of future lidar studies should broaden to include low density forests, particularly systems where the vertical structure of the canopy is important
NASA Astrophysics Data System (ADS)
Nakano, S.; Fok, M.-C.; Brandt, P. C.; Higuchi, T.
2014-05-01
We have developed a technique by which to estimate the spatial distribution of plasmaspheric helium ions based on extreme ultraviolet (EUV) data obtained from the IMAGE satellite. The estimation is performed using a linear inversion method based on the Bayesian approach. The global imaging data from the IMAGE satellite enable us to estimate a global two-dimensional distribution of the helium ions in the plasmasphere. We applied this technique to a synthetic EUV image generated from a numerical model. This technique was confirmed to successfully reproduce the helium ion density that generated the synthetic EUV data. We also demonstrate how the proposed technique works for real data using two real EUV images.
NASA Astrophysics Data System (ADS)
Shanta, Shahnoor; Kadirkamanathan, Visakan
2015-02-01
A bootstrap-based methodology is developed for parameter estimation and polyspectral density estimation in the case of the approximating model of the underlying stochastic process being non-minimum phase autoregressive-moving-average (ARMA) type, given a finite realisation of a single time series data. The method is based on a minimum phase/maximum phase decomposition of the system function together with a time reversal step for the parameter and polyspectral confidence interval estimation. Simulation examples are provided to illustrate the proposed method.
Avetisov, K S; Markosian, A G
2013-01-01
Results of combined ultrasound scanning for estimation of acoustic lens density and biometric relations of lens and other eye structures are presented. A group of 124 patients (189 eyes) was studied; they were subdivided depending on age and length of anteroposterior axis of the eye. Examination algorithm was developed that allows selective estimation of acoustic density of different lens zones and biometric measurements including volumetric. Age-related increase of acoustic density of different lens zones was revealed that indirectly shows method efficiency. Biometric studies showed almost concurring volumetric lens measurements in "normal" and "short" eyes in spite of significantly thicker central zone of the latter. Significantly lower correlation between anterior chamber volume and width of its angle was revealed in "short" eyes and "normal" and "long" eyes (correlation coefficients 0.37, 0.68 and 0.63 respectively).
Cavada, Nathalie; Barelli, Claudia; Ciolli, Marco; Rovero, Francesco
2016-01-01
Accurate density estimations of threatened animal populations is essential for management and conservation. This is particularly critical for species living in patchy and altered landscapes, as is the case for most tropical forest primates. In this study, we used a hierarchical modelling approach that incorporates the effect of environmental covariates on both the detection (i.e. observation) and the state (i.e. abundance) processes of distance sampling. We applied this method to already published data on three arboreal primates of the Udzungwa Mountains of Tanzania, including the endangered and endemic Udzungwa red colobus (Procolobus gordonorum). The area is a primate hotspot at continental level. Compared to previous, 'canonical' density estimates, we found that the inclusion of covariates in the modelling makes the inference process more informative, as it takes in full account the contrasting habitat and protection levels among forest blocks. The correction of density estimates for imperfect detection was especially critical where animal detectability was low. Relative to our approach, density was underestimated by the canonical distance sampling, particularly in the less protected forest. Group size had an effect on detectability, determining how the observation process varies depending on the socio-ecology of the target species. Lastly, as the inference on density is spatially-explicit to the scale of the covariates used in the modelling, we could confirm that primate densities are highest in low-to-mid elevations, where human disturbance tend to be greater, indicating a considerable resilience by target monkeys in disturbed habitats. However, the marked trend of lower densities in unprotected forests urgently calls for effective forest protection.
NASA Astrophysics Data System (ADS)
Calabia, Andres; Jin, Shuanggen
2017-02-01
The thermospheric mass density variations and the thermosphere-ionosphere coupling during geomagnetic storms are not clear due to lack of observables and large uncertainty in the models. Although accelerometers on-board Low-Orbit-Earth (LEO) satellites can measure non-gravitational accelerations and derive thermospheric mass density variations with unprecedented details, their measurements are not always available (e.g., for the March 2013 geomagnetic storm). In order to cover accelerometer data gaps of Gravity Recovery and Climate Experiment (GRACE), we estimate thermospheric mass densities from numerical derivation of GRACE determined precise orbit ephemeris (POE) for the period 2011-2016. Our results show good correlation with accelerometer-based mass densities, and a better estimation than the NRLMSISE00 empirical model. Furthermore, we statistically analyze the differences to accelerometer-based densities, and study the March 2013 geomagnetic storm response. The thermospheric density enhancements at the polar regions on 17 March 2013 are clearly represented by POE-based measurements. Although our results show density variations better correlate with Dst and k-derived geomagnetic indices, the auroral electroject activity index AE as well as the merging electric field Em picture better agreement at high latitude for the March 2013 geomagnetic storm. On the other side, low-latitude variations are better represented with the Dst index. With the increasing resolution and accuracy of Precise Orbit Determination (POD) products and LEO satellites, the straightforward technique of determining non-gravitational accelerations and thermospheric mass densities through numerical differentiation of POE promises potentially good applications for the upper atmosphere research community.
A field comparison of nested grid and trapping web density estimators
Jett, D.A.; Nichols, J.D.
1987-01-01
The usefulness of capture-recapture estimators in any field study will depend largely on underlying model assumptions and on how closely these assumptions approximate the actual field situation. Evaluation of estimator performance under real-world field conditions is often a difficult matter, although several approaches are possible. Perhaps the best approach involves use of the estimation method on a population with known parameters.
Assessment of a New Method for Estimating Density of Suspended Particles
2013-09-30
and a custom-built Digital Floc Camera ( DFC ). The LISST estimates particle volumes for particles with diameters from ~1.25-250 µm, and the DFC ...estimates volumes of particles with diameters larger than ~50 µm. Although the DFC is not commercially available, there are new commercial sensors that...light from a collimated laser beam. The DFC estimates particle volume by analysis of silhouette, backlit images of particles suspended in a 4 x 4 x 2.5
Estimation of the density of Martian soil from radiophysical measurements in the 3-centimeter range
NASA Technical Reports Server (NTRS)
Krupenio, N. N.
1977-01-01
The density of the Martian soil is evaluated at a depth up to one meter using the results of radar measurement at lambda sub 0 = 3.8 cm and polarized radio astronomical measurement at lambda sub 0 = 3.4 cm conducted onboard the automatic interplanetary stations Mars 3 and Mars 5. The average value of the soil density according to all measurements is rho bar = 1.37 plus or minus 0.33 g/ cu cm. A map of the distribution of the permittivity and soil density is derived, which was drawn up according to radiophysical data in the 3 centimeter range.
NASA Astrophysics Data System (ADS)
Lee, Jae-Ok; Moon, Yong-Jae; Lee, Jin-Yi; Lee, Kyoung-Sun; Kim, Rok-Soon
2015-04-01
In this study, we estimate coronal electron density distributions by analyzing DH type II radio observations based on the assumption: a DH type II radio burst is generated by the shock formed at a CME leading edge. For this, we consider 11 Wind/WAVES DH type II radio bursts (from 2000 to 2003 and from 2010 to 2012) associated with SOHO/LASCO limb CMEs using the following criteria: (1) the fundamental and second harmonic emission lanes are well identified in the frequency range of 1 to 14 MHz; (2) its associated CME is clearly identified at least twice in the LASCO-C2 or C3 field of view during the time of type II observation. For these events, we determine the lowest frequencies of their fundamental emission lanes and the heights of their leading edges. Coronal electron density distributions are obtained by minimizing the root mean square error between the observed heights of CME leading edges and the heights of DH type II radio bursts from assumed electron density distributions. We find that the estimated coronal electron density distribution range from 2.5 to 10.2-fold Saito’s coronal electron density models.
Després-Einspenner, Marie-Lyne; Howe, Eric J; Drapeau, Pierre; Kühl, Hjalmar S
2017-03-07
Empirical validations of survey methods for estimating animal densities are rare, despite the fact that only an application to a population of known density can demonstrate their reliability under field conditions and constraints. Here, we present a field validation of camera trapping in combination with spatially explicit capture-recapture (SECR) methods for enumerating chimpanzee populations. We used 83 camera traps to sample a habituated community of western chimpanzees (Pan troglodytes verus) of known community and territory size in Taï National Park, Ivory Coast, and estimated community size and density using spatially explicit capture-recapture models. We aimed to: (1) validate camera trapping as a means to collect capture-recapture data for chimpanzees; (2) validate SECR methods to estimate chimpanzee density from camera trap data; (3) compare the efficacy of targeting locations frequently visited by chimpanzees versus deploying cameras according to a systematic design; (4) evaluate the performance of SECR estimators with reduced sampling effort; and (5) identify sources of heterogeneity in detection probabilities. Ten months of camera trapping provided abundant capture-recapture data. All weaned individuals were detected, most of them multiple times, at both an array of targeted locations, and a systematic grid of cameras positioned randomly within the study area, though detection probabilities were higher at targeted locations. SECR abundance estimates were accurate and precise, and analyses of subsets of the data indicated that the majority of individuals in a community could be detected with as few as five traps deployed within their territory. Our results highlight the potential of camera trapping for cost-effective monitoring of chimpanzee populations.
NASA Technical Reports Server (NTRS)
Jergas, M.; Breitenseher, M.; Gluer, C. C.; Yu, W.; Genant, H. K.
1995-01-01
To determine whether estimates of volumetric bone density from projectional scans of the lumbar spine have weaker associations with height and weight and stronger associations with prevalent vertebral fractures than standard projectional bone mineral density (BMD) and bone mineral content (BMC), we obtained posteroanterior (PA) dual X-ray absorptiometry (DXA), lateral supine DXA (Hologic QDR 2000), and quantitative computed tomography (QCT, GE 9800 scanner) in 260 postmenopausal women enrolled in two trials of treatment for osteoporosis. In 223 women, all vertebral levels, i.e., L2-L4 in the DXA scan and L1-L3 in the QCT scan, could be evaluated. Fifty-five women were diagnosed as having at least one mild fracture (age 67.9 +/- 6.5 years) and 168 women did not have any fractures (age 62.3 +/- 6.9 years). We derived three estimates of "volumetric bone density" from PA DXA (BMAD, BMAD*, and BMD*) and three from paired PA and lateral DXA (WA BMD, WA BMDHol, and eVBMD). While PA BMC and PA BMD were significantly correlated with height (r = 0.49 and r = 0.28) or weight (r = 0.38 and r = 0.37), QCT and the volumetric bone density estimates from paired PA and lateral scans were not (r = -0.083 to r = 0.050). BMAD, BMAD*, and BMD* correlated with weight but not height. The associations with vertebral fracture were stronger for QCT (odds ratio [QR] = 3.17; 95% confidence interval [CI] = 1.90-5.27), eVBMD (OR = 2.87; CI 1.80-4.57), WA BMDHol (OR = 2.86; CI 1.80-4.55) and WA-BMD (OR = 2.77; CI 1.75-4.39) than for BMAD*/BMD* (OR = 2.03; CI 1.32-3.12), BMAD (OR = 1.68; CI 1.14-2.48), lateral BMD (OR = 1.88; CI 1.28-2.77), standard PA BMD (OR = 1.47; CI 1.02-2.13) or PA BMC (OR = 1.22; CI 0.86-1.74). The areas under the receiver operating characteristic (ROC) curves for QCT and all estimates of volumetric BMD were significantly higher compared with standard PA BMD and PA BMC. We conclude that, like QCT, estimates of volumetric bone density from paired PA and lateral scans are
Minh, David D L; Vaikuntanathan, Suriyanarayanan
2011-01-21
The nonequilibrium fluctuation theorems have paved the way for estimating equilibrium thermodynamic properties, such as free energy differences, using trajectories from driven nonequilibrium processes. While many statistical estimators may be derived from these identities, some are more efficient than others. It has recently been suggested that trajectories sampled using a particular time-dependent protocol for perturbing the Hamiltonian may be analyzed with another one. Choosing an analysis protocol based on the nonequilibrium density was empirically demonstrated to reduce the variance and bias of free energy estimates. Here, we present an alternate mathematical formalism for protocol postprocessing based on the Feynmac-Kac theorem. The estimator that results from this formalism is demonstrated on a few low-dimensional model systems. It is found to have reduced bias compared to both the standard form of Jarzynski's equality and the previous protocol postprocessing formalism.
Singer, D.A.; Kouda, R.
2011-01-01
Empirical evidence indicates that processes affecting number and quantity of resources in geologic settings are very general across deposit types. Sizes of permissive tracts that geologically could contain the deposits are excellent predictors of numbers of deposits. In addition, total ore tonnage of mineral deposits of a particular type in a tract is proportional to the type's median tonnage in a tract. Regressions using size of permissive tracts and median tonnage allow estimation of number of deposits and of total tonnage of mineralization. These powerful estimators, based on 10 different deposit types from 109 permissive worldwide control tracts, generalize across deposit types. Estimates of number of deposits and of total tonnage of mineral deposits are made by regressing permissive area, and mean (in logs) tons in deposits of the type, against number of deposits and total tonnage of deposits in the tract for the 50th percentile estimates. The regression equations (R2=0.91 and 0.95) can be used for all deposit types just by inserting logarithmic values of permissive area in square kilometers, and mean tons in deposits in millions of metric tons. The regression equations provide estimates at the 50th percentile, and other equations are provided for 90% confidence limits for lower estimates and 10% confidence limits for upper estimates of number of deposits and total tonnage. Equations for these percentile estimates along with expected value estimates are presented here along with comparisons with independent expert estimates. Also provided are the equations for correcting for the known well-explored deposits in a tract. These deposit-density models require internally consistent grade and tonnage models and delineations for arriving at unbiased estimates. ?? 2011 International Association for Mathematical Geology (outside the USA).
Jaffé, Rodolfo; Dietemann, Vincent; Allsopp, Mike H; Costa, Cecilia; Crewe, Robin M; Dall'olio, Raffaele; DE LA Rúa, Pilar; El-Niweiri, Mogbel A A; Fries, Ingemar; Kezic, Nikola; Meusel, Michael S; Paxton, Robert J; Shaibi, Taher; Stolle, Eckart; Moritz, Robin F A
2010-04-01
Although pollinator declines are a global biodiversity threat, the demography of the western honeybee (Apis mellifera) has not been considered by conservationists because it is biased by the activity of beekeepers. To fill this gap in pollinator decline censuses and to provide a broad picture of the current status of honeybees across their natural range, we used microsatellite genetic markers to estimate colony densities and genetic diversity at different locations in Europe, Africa, and central Asia that had different patterns of land use. Genetic diversity and colony densities were highest in South Africa and lowest in Northern Europe and were correlated with mean annual temperature. Confounding factors not related to climate, however, are also likely to influence genetic diversity and colony densities in honeybee populations. Land use showed a significantly negative influence over genetic diversity and the density of honeybee colonies over all sampling locations. In Europe honeybees sampled in nature reserves had genetic diversity and colony densities similar to those sampled in agricultural landscapes, which suggests that the former are not wild but may have come from managed hives. Other results also support this idea: putative wild bees were rare in our European samples, and the mean estimated density of honeybee colonies on the continent closely resembled the reported mean number of managed hives. Current densities of European honeybee populations are in the same range as those found in the adverse climatic conditions of the Kalahari and Saharan deserts, which suggests that beekeeping activities do not compensate for the loss of wild colonies. Our findings highlight the importance of reconsidering the conservation status of honeybees in Europe and of regarding beekeeping not only as a profitable business for producing honey, but also as an essential component of biodiversity conservation.
A Mass and Density Estimate for the Unshocked Ejecta in Cas A based on Low Frequency Radio Data
NASA Astrophysics Data System (ADS)
DeLaney, Tracey; Kassim, N.; Rudnick, L.; Isensee, K.
2012-01-01
One of the key discoveries from the spectral mapping of Cassiopeia A with the Spitzer Space Telescope was the discovery of infrared emission from cold silicon- and oxygen-rich ejecta interior to the reverse shock. When mapped into three dimensions, the ejecta distribution, including both hot and cold ejecta, appears quite flattened. On the front and back sides of Cas A, the Si- and O-rich ejecta have yet to reach the reverse shock while around the edge these layers are currently encountering the reverse shock giving rise to the Bright Ring structure that dominates Cas A's X-ray, optical, and radio morphology. In addition to morphology, the density and total mass remaining in the cold, unshocked ejecta are important parameters for modeling Cas A's explosion and subsequent evolution. The density estimated from the Spitzer data is not particularly useful (upper limit of 100/cm^3), however the cold ejecta are also observed via free-free absorption at low radio frequencies. Using Very Large Array observations at 330 and 74 MHz, we have a new density estimate of 2.3/cm^3 and a total mass estimate of 0.44 M_solar for the cold, unshocked ejecta. Our estimates are sensitive to a number of factors including temperature and geometry but we are quite pleased that our unshocked mass estimate is within a factor of two of estimates based on dynamical models. We will also ponder the presence, or absence, of cold iron- and carbon-rich ejecta and how these affect our calculations.
NASA Astrophysics Data System (ADS)
Dafflon, B.; Barrash, W.; Cardiff, M.; Johnson, T. C.
2011-12-01
Reliable predictions of groundwater flow and solute transport require an estimation of the detailed distribution of the parameters (e.g., hydraulic conductivity, effective porosity) controlling these processes. However, such parameters are difficult to estimate because of the inaccessibility and complexity of the subsurface. In this regard, developments in parameter estimation techniques and investigations of field experiments are still challenging and necessary to improve our understanding and the prediction of hydrological processes. Here we analyze a conservative tracer test conducted at the Boise Hydrogeophysical Research Site in 2001 in a heterogeneous unconfined fluvial aquifer. Some relevant characteristics of this test include: variable-density (sinking) effects because of the injection concentration of the bromide tracer, the relatively small size of the experiment, and the availability of various sources of geophysical and hydrological information. The information contained in this experiment is evaluated through several parameter estimation approaches, including a grid-search-based strategy, stochastic simulation of hydrological property distributions, and deterministic inversion using regularization and pilot-point techniques. Doing this allows us to investigate hydraulic conductivity and effective porosity distributions and to compare the effects of assumptions from several methods and parameterizations. Our results provide new insights into the understanding of variable-density transport processes and the hydrological relevance of incorporating various sources of information in parameter estimation approaches. Among others, the variable-density effect and the effective porosity distribution, as well as their coupling with the hydraulic conductivity structure, are seen to be significant in the transport process. The results also show that assumed prior information can strongly influence the estimated distributions of hydrological properties.
NASA Technical Reports Server (NTRS)
Jasinski, Michael F.; Crago, Richard
1994-01-01
Parameterizations of the frontal area index and canopy area index of natural or randomly distributed plants are developed, and applied to the estimation of local aerodynamic roughness using satellite imagery. The formulas are expressed in terms of the subpixel fractional vegetation cover and one non-dimensional geometric parameter that characterizes the plant's shape. Geometrically similar plants and Poisson distributed plant centers are assumed. An appropriate averaging technique to extend satellite pixel-scale estimates to larger scales is provided. ne parameterization is applied to the estimation of aerodynamic roughness using satellite imagery for a 2.3 sq km coniferous portion of the Landes Forest near Lubbon, France, during the 1986 HAPEX-Mobilhy Experiment. The canopy area index is estimated first for each pixel in the scene based on previous estimates of fractional cover obtained using Landsat Thematic Mapper imagery. Next, the results are incorporated into Raupach's (1992, 1994) analytical formulas for momentum roughness and zero-plane displacement height. The estimates compare reasonably well to reference values determined from measurements taken during the experiment and to published literature values. The approach offers the potential for estimating regionally variable, vegetation aerodynamic roughness lengths over natural regions using satellite imagery when there exists only limited knowledge of the vegetated surface.
Lapuerta, Magín; Rodríguez-Fernández, José; Armas, Octavio
2010-09-01
Biodiesel fuels (methyl or ethyl esters derived from vegetables oils and animal fats) are currently being used as a means to diminish the crude oil dependency and to limit the greenhouse gas emissions of the transportation sector. However, their physical properties are different from traditional fossil fuels, this making uncertain their effect on new, electronically controlled vehicles. Density is one of those properties, and its implications go even further. First, because governments are expected to boost the use of high-biodiesel content blends, but biodiesel fuels are denser than fossil ones. In consequence, their blending proportion is indirectly restricted in order not to exceed the maximum density limit established in fuel quality standards. Second, because an accurate knowledge of biodiesel density permits the estimation of other properties such as the Cetane Number, whose direct measurement is complex and presents low repeatability and low reproducibility. In this study we compile densities of methyl and ethyl esters published in literature, and proposed equations to convert them to 15 degrees C and to predict the biodiesel density based on its chain length and unsaturation degree. Both expressions were validated for a wide range of commercial biodiesel fuels. Using the latter, we define a term called Biodiesel Cetane Index, which predicts with high accuracy the Biodiesel Cetane Number. Finally, simple calculations prove that the introduction of high-biodiesel content blends in the fuel market would force the refineries to reduce the density of their fossil fuels.
Zhang Yumin; Lum, Kai-Yew; Wang Qingguo
2009-03-05
In this paper, a H-infinity fault detection and diagnosis (FDD) scheme for a class of discrete nonlinear system fault using output probability density estimation is presented. Unlike classical FDD problems, the measured output of the system is viewed as a stochastic process and its square root probability density function (PDF) is modeled with B-spline functions, which leads to a deterministic space-time dynamic model including nonlinearities, uncertainties. A weighting mean value is given as an integral function of the square root PDF along space direction, which leads a function only about time and can be used to construct residual signal. Thus, the classical nonlinear filter approach can be used to detect and diagnose the fault in system. A feasible detection criterion is obtained at first, and a new H-infinity adaptive fault diagnosis algorithm is further investigated to estimate the fault. Simulation example is given to demonstrate the effectiveness of the proposed approaches.
Paul, Sabyasachi; Suman, V; Sarkar, P K; Ranade, A K; Pulhani, V; Dafauti, S; Datta, D
2013-08-01
A wavelet transform based denoising methodology has been applied to detect the presence of any discernable trend in (137)Cs and (90)Sr activity levels in bore-hole water samples collected four times a year over a period of eight years, from 2002 to 2009, in the vicinity of typical nuclear facilities inside the restricted access zones. The conventional non-parametric methods viz., Mann-Kendall and Spearman rho, along with linear regression when applied for detecting the linear trend in the time series data do not yield results conclusive for trend detection with a confidence of 95% for most of the samples. The stationary wavelet based hard thresholding data pruning method with Haar as the analyzing wavelet was applied to remove the noise present in the same data. Results indicate that confidence interval of the established trend has significantly improved after pre-processing to more than 98% compared to the conventional non-parametric methods when applied to direct measurements.
Wang, Shuihua; Chen, Mengmeng; Li, Yang; Zhang, Yudong; Han, Liangxiu; Wu, Jane; Du, Sidan
2015-01-01
Identification and detection of dendritic spines in neuron images are of high interest in diagnosis and treatment of neurological and psychiatric disorders (e.g., Alzheimer's disease, Parkinson's diseases, and autism). In this paper, we have proposed a novel automatic approach using wavelet-based conditional symmetric analysis and regularized morphological shared-weight neural networks (RMSNN) for dendritic spine identification involving the following steps: backbone extraction, localization of dendritic spines, and classification. First, a new algorithm based on wavelet transform and conditional symmetric analysis has been developed to extract backbone and locate the dendrite boundary. Then, the RMSNN has been proposed to classify the spines into three predefined categories (mushroom, thin, and stubby). We have compared our proposed approach against the existing methods. The experimental result demonstrates that the proposed approach can accurately locate the dendrite and accurately classify the spines into three categories with the accuracy of 99.1% for "mushroom" spines, 97.6% for "stubby" spines, and 98.6% for "thin" spines.
NASA Astrophysics Data System (ADS)
Tehrani, Kayvan Forouhesh; Mortensen, Luke J.; Kner, Peter
2016-03-01
Wavefront sensorless schemes for correction of aberrations induced by biological specimens require a time invariant property of an image as a measure of fitness. Image intensity cannot be used as a metric for Single Molecule Localization (SML) microscopy because the intensity of blinking fluorophores follows exponential statistics. Therefore a robust intensity-independent metric is required. We previously reported a Fourier Metric (FM) that is relatively intensity independent. The Fourier metric has been successfully tested on two machine learning algorithms, a Genetic Algorithm and Particle Swarm Optimization, for wavefront correction about 50 μm deep inside the Central Nervous System (CNS) of Drosophila. However, since the spatial frequencies that need to be optimized fall into regions of the Optical Transfer Function (OTF) that are more susceptible to noise, adding a level of denoising can improve performance. Here we present wavelet-based approaches to lower the noise level and produce a more consistent metric. We compare performance of different wavelets such as Daubechies, Bi-Orthogonal, and reverse Bi-orthogonal of different degrees and orders for pre-processing of images.
Wang, Shuihua; Chen, Mengmeng; Li, Yang; Zhang, Yudong; Han, Liangxiu; Wu, Jane; Du, Sidan
2015-01-01
Identification and detection of dendritic spines in neuron images are of high interest in diagnosis and treatment of neurological and psychiatric disorders (e.g., Alzheimer's disease, Parkinson's diseases, and autism). In this paper, we have proposed a novel automatic approach using wavelet-based conditional symmetric analysis and regularized morphological shared-weight neural networks (RMSNN) for dendritic spine identification involving the following steps: backbone extraction, localization of dendritic spines, and classification. First, a new algorithm based on wavelet transform and conditional symmetric analysis has been developed to extract backbone and locate the dendrite boundary. Then, the RMSNN has been proposed to classify the spines into three predefined categories (mushroom, thin, and stubby). We have compared our proposed approach against the existing methods. The experimental result demonstrates that the proposed approach can accurately locate the dendrite and accurately classify the spines into three categories with the accuracy of 99.1% for “mushroom” spines, 97.6% for “stubby” spines, and 98.6% for “thin” spines. PMID:26692046
NASA Technical Reports Server (NTRS)
LeMoigne, Jacqueline; Laporte, Nadine; Netanyahuy, Nathan S.; Zukor, Dorothy (Technical Monitor)
2001-01-01
The characterization and the mapping of land cover/land use of forest areas, such as the Central African rainforest, is a very complex task. This complexity is mainly due to the extent of such areas and, as a consequence, to the lack of full and continuous cloud-free coverage of those large regions by one single remote sensing instrument, In order to provide improved vegetation maps of Central Africa and to develop forest monitoring techniques for applications at the local and regional scales, we propose to utilize multi-sensor remote sensing observations coupled with in-situ data. Fusion and clustering of multi-sensor data are the first steps towards the development of such a forest monitoring system. In this paper, we will describe some preliminary experiments involving the fusion of SAR and Landsat image data of the Lope Reserve in Gabon. Similarly to previous fusion studies, our fusion method is wavelet-based. The fusion provides a new image data set which contains more detailed texture features and preserves the large homogeneous regions that are observed by the Thematic Mapper sensor. The fusion step is followed by unsupervised clustering and provides a vegetation map of the area.
Estimates of Precipitation Embryo Densities Using Measurements from an Aircraft Radar.
NASA Astrophysics Data System (ADS)
Mather, Graeme K.
1989-10-01
Determination of the habits (ice or water) and therefore the densities of particles whose images are acquired by 2D probes is often an ambiguous process. A Learjet's radar measurements of equivalent reflectivity factors from a range gate 1800 m ahead of the aircraft are compared to reflectivities calculated from images acquired by a 2D-C probe over a range of assumed particle densities from 0.2 to 1 g cm3. Although the comparisons suffer from many uncertainties, such as the vast disparity between the volumes sampled by the 2D-C probe and the aircraft radar, the method does discriminate well between water drops or recently frozen riming water drops and low density graupel particles.
Effects of body position on lung density estimated from EIT data
NASA Astrophysics Data System (ADS)
Noshiro, Makoto; Ebihara, Kei; Sato, Ena; Nebuya, Satoru; Brown, Brian H.
2010-04-01
Normal subjects took the sitting, supine, prone, right lateral and left lateral positions during the measurement procedure. One minute epochs of EIT data were collected at the levels of the 3rd, 4th, 5th and 6th intercostal spaces in each position during normal tidal breathing. Lung density was then determined from the EIT data using the method proposed by Brown5. Lung density at the electrode level of the 6th intercostal space was different from that at almost any other levels in both male and female subjects, and lung density at the electrode levels of the 4th and 5th intercostal spaces in male subjects did not depend upon position.
Rivera-Milan, F. F.; Collazo, J.A.; Stahala, C.; Moore, W.J.; Davis, A.; Herring, G.; Steinkamp, M.; Pagliaro, R.; Thompson, J.L.; Bracey, W.
2005-01-01
Once abundant and widely distributed, the Bahama parrot (Amazona leucocephala bahamensis) currently inhabits only the Great Abaco and Great lnagua Islands of the Bahamas. In January 2003 and May 2002-2004, we conducted point-transect surveys (a type of distance sampling) to estimate density and population size and make recommendations for monitoring trends. Density ranged from 0.061 (SE = 0.013) to 0.085 (SE = 0.018) parrots/ha and population size ranged from 1,600 (SE = 354) to 2,386 (SE = 508) parrots when extrapolated to the 26,154 ha and 28,162 ha covered by surveys on Abaco in May 2002 and 2003, respectively. Density was 0.183 (SE = 0.049) and 0.153 (SE = 0.042) parrots/ha and population size was 5,344 (SE = 1,431) and 4,450 (SE = 1,435) parrots when extrapolated to the 29,174 ha covered by surveys on Inagua in May 2003 and 2004, respectively. Because parrot distribution was clumped, we would need to survey 213-882 points on Abaco and 258-1,659 points on Inagua to obtain a CV of 10-20% for estimated density. Cluster size and its variability and clumping increased in wintertime, making surveys imprecise and cost-ineffective. Surveys were reasonably precise and cost-effective in springtime, and we recommend conducting them when parrots are pairing and selecting nesting sites. Survey data should be collected yearly as part of an integrated monitoring strategy to estimate density and other key demographic parameters and improve our understanding of the ecological dynamics of these geographically isolated parrot populations at risk of extinction.
NASA Astrophysics Data System (ADS)
Jiménez-Donaire, M. J.; Bigiel, F.; Leroy, A. K.; Cormier, D.; Gallagher, M.; Usero, A.; Bolatto, A.; Colombo, D.; García-Burillo, S.; Hughes, A.; Kramer, C.; Krumholz, M. R.; Meier, D. S.; Murphy, E.; Pety, J.; Rosolowsky, E.; Schinnerer, E.; Schruba, A.; Tomičić, N.; Zschaechner, L.
2017-04-01
High critical density molecular lines like HCN (1-0) or HCO+ (1-0) represent our best tool to study currently star-forming, dense molecular gas at extragalactic distances. The optical depth of these lines is a key ingredient to estimate the effective density required to excite emission. However, constraints on this quantity are even scarcer in the literature than measurements of the high-density tracers themselves. Here, we combine new observations of HCN, HCO+ and HNC (1-0) and their optically thin isotopologues H13CN, H13CO+ and HN13C (1-0) to measure isotopologue line ratios. We use IRAM 30-m observations from the large programme EMPIRE and new Atacama Large Millimetre/submillimetre Array observations, which together target six nearby star-forming galaxies. Using spectral stacking techniques, we calculate or place strong upper limits on the HCN/H13CN, HCO+/H13CO+ and HNC/HN13C line ratios in the inner parts of these galaxies. Under simple assumptions, we use these to estimate the optical depths of HCN (1-0) and HCO+ (1-0) to be τ ∼ 2-11 in the active, inner regions of our targets. The critical densities are consequently lowered to values between 5 and 20 × 105 cm-3, 1 and 3 × 105 cm-3 and 9 × 104 cm-3 for HCN, HCO+ and HNC, respectively. We study the impact of having different beam-filling factors, η, on these estimates and find that the effective critical densities decrease by a factor of η _{12}/η _{13} τ_{12}. A comparison to existing work in NGC 5194 and NGC 253 shows the HCN/H13CN and HCO+/H13CO+ ratios in agreement with our measurements within the uncertainties. The same is true for studies in other environments such as the Galactic Centre or nuclear regions of active galactic nucleus dominated nearby galaxies.
Arora, Bhavna; Mohanty, Binayak P.; McGuire, Jennifer T.
2013-01-01
Soil and crop management practices have been found to modify soil structure and alter macropore densities. An ability to accurately determine soil hydraulic parameters and their variation with changes in macropore density is crucial for assessing potential contamination from agricultural chemicals. This study investigates the consequences of using consistent matrix and macropore parameters in simulating preferential flow and bromide transport in soil columns with different macropore densities (no macropore, single macropore, and multiple macropores). As used herein, the term“macropore density” is intended to refer to the number of macropores per unit area. A comparison between continuum-scale models including single-porosity model (SPM), mobile-immobile model (MIM), and dual-permeability model (DPM) that employed these parameters is also conducted. Domain-specific parameters are obtained from inverse modeling of homogeneous (no macropore) and central macropore columns in a deterministic framework and are validated using forward modeling of both low-density (3 macropores) and high-density (19 macropores) multiple-macropore columns. Results indicate that these inversely modeled parameters are successful in describing preferential flow but not tracer transport in both multiple-macropore columns. We believe that lateral exchange between matrix and macropore domains needs better accounting to efficiently simulate preferential transport in the case of dense, closely spaced macropores. Increasing model complexity from SPM to MIM to DPM also improved predictions of preferential flow in the multiple-macropore columns but not in the single-macropore column. This suggests that the use of a more complex model with resolved domain-specific parameters is recommended with an increase in macropore density to generate forecasts with higher accuracy. PMID:24511165
van Kuijk, Silvy M; García-Suikkanen, Carolina; Tello-Alvarado, Julio C; Vermeer, Jan; Hill, Catherine M
2015-01-01
We calculated the population density of the critically endangered Callicebus oenanthe in the Ojos de Agua Conservation Concession, a dry forest area in the department of San Martin, Peru. Results showed significant differences (p < 0.01) in group densities between forest boundaries (16.5 groups/km2, IQR = 21.1-11.0) and forest interior (4.0 groups/km2, IQR = 5.0-0.0), suggesting the 2,550-ha area harbours roughly 1,150 titi monkeys. This makes Ojos de Agua an important cornerstone in the conservation of the species, because it is one of the largest protected areas where the species occurs.
Martínez-Reina, Javier; Ojeda, Joaquín; Mayo, Juana
2016-01-01
Bone remodelling models are widely used in a phenomenological manner to estimate numerically the distribution of apparent density in bones from the loads they are daily subjected to. These simulations start from an arbitrary initial distribution, usually homogeneous, and the density changes locally until a bone remodelling equilibrium is achieved. The bone response to mechanical stimulus is traditionally formulated with a mathematical relation that considers the existence of a range of stimulus, called dead or lazy zone, for which no net bone mass change occurs. Implementing a relation like that leads to different solutions depending on the starting density. The non-uniqueness of the solution has been shown in this paper using two different bone remodelling models: one isotropic and another anisotropic. It has also been shown that the problem of non-uniqueness is only mitigated by removing the dead zone, but it is not completely solved unless the bone formation and bone resorption rates are limited to certain maximum values.
Rayan, D Mark; Mohamad, Shariff Wan; Dorward, Leejiah; Aziz, Sheema Abdul; Clements, Gopalasamy Reuben; Christopher, Wong Chai Thiam; Traeholt, Carl; Magintan, David
2012-12-01
The endangered Asian tapir (Tapirus indicus) is threatened by large-scale habitat loss, forest fragmentation and increased hunting pressure. Conservation planning for this species, however, is hampered by a severe paucity of information on its ecology and population status. We present the first Asian tapir population density estimate from a camera trapping study targeting tigers in a selectively logged forest within Peninsular Malaysia using a spatially explicit capture-recapture maximum likelihood based framework. With a trap effort of 2496 nights, 17 individuals were identified corresponding to a density (standard error) estimate of 9.49 (2.55) adult tapirs/100 km(2) . Although our results include several caveats, we believe that our density estimate still serves as an important baseline to facilitate the monitoring of tapir population trends in Peninsular Malaysia. Our study also highlights the potential of extracting vital ecological and population information for other cryptic individually identifiable animals from tiger-centric studies, especially with the use of a spatially explicit capture-recapture maximum likelihood based framework.
A wavelet-based statistical analysis of FMRI data: I. motivation and data distribution modeling.
Dinov, Ivo D; Boscardin, John W; Mega, Michael S; Sowell, Elizabeth L; Toga, Arthur W
2005-01-01
We propose a new method for statistical analysis of functional magnetic resonance imaging (fMRI) data. The discrete wavelet transformation is employed as a tool for efficient and robust signal representation. We use structural magnetic resonance imaging (MRI) and fMRI to empirically estimate the distribution of the wavelet coefficients of the data both across individuals and spatial locations. An anatomical subvolume probabilistic atlas is used to tessellate the structural and functional signals into smaller regions each of which is processed separately. A frequency-adaptive wavelet shrinkage scheme is employed to obtain essentially optimal estimations of the signals in the wavelet space. The empirical distributions of the signals on all the regions are computed in a compressed wavelet space. These are modeled by heavy-tail distributions because their histograms exhibit slower tail decay than the Gaussian. We discovered that the Cauchy, Bessel K Forms, and Pareto distributions provide the most accurate asymptotic models for the distribution of the wavelet coefficients of the data. Finally, we propose a new model for statistical analysis of functional MRI data using this atlas-based wavelet space representation. In the second part of our investigation, we will apply this technique to analyze a large fMRI dataset involving repeated presentation of sensory-motor response stimuli in young, elderly, and demented subjects.
Adib, Mani; Cretu, Edmond
2013-01-01
We present a new method for removing artifacts in electroencephalography (EEG) records during Galvanic Vestibular Stimulation (GVS). The main challenge in exploiting GVS is to understand how the stimulus acts as an input to brain. We used EEG to monitor the brain and elicit the GVS reflexes. However, GVS current distribution throughout the scalp generates an artifact on EEG signals. We need to eliminate this artifact to be able to analyze the EEG signals during GVS. We propose a novel method to estimate the contribution of the GVS current in the EEG signals at each electrode by combining time-series regression methods with wavelet decomposition methods. We use wavelet transform to project the recorded EEG signal into various frequency bands and then estimate the GVS current distribution in each frequency band. The proposed method was optimized using simulated signals, and its performance was compared to well-accepted artifact removal methods such as ICA-based methods and adaptive filters. The results show that the proposed method has better performance in removing GVS artifacts, compared to the others. Using the proposed method, a higher signal to artifact ratio of -1.625 dB was achieved, which outperformed other methods such as ICA-based methods, regression methods, and adaptive filters.
Dynamics of photosynthetic photon flux density (PPFD) and estimates in coastal northern California
Technology Transfer Automated Retrieval System (TEKTRAN)
The seasonal trends and diurnal patterns of Photosynthetically Active Radiation (PAR) were investigated in the San Francisco Bay Area of Northern California from March through August in 2007 and 2008. During these periods, the daily values of PAR flux density (PFD), energy loading with PAR (PARE), a...
NASA Astrophysics Data System (ADS)
Sarangi, Bighnaraj; Aggarwal, Shankar G.; Sinha, Deepak; Gupta, Prabhat K.
2016-03-01
In this work, we have used a scanning mobility particle sizer (SMPS) and a quartz crystal microbalance (QCM) to estimate the effective density of aerosol particles. This approach is tested for aerosolized particles generated from the solution of standard materials of known density, i.e. ammonium sulfate (AS), ammonium nitrate (AN) and sodium chloride (SC), and also applied for ambient measurement in New Delhi. We also discuss uncertainty involved in the measurement. In this method, dried particles are introduced in to a differential mobility analyser (DMA), where size segregation is done based on particle electrical mobility. Downstream of the DMA, the aerosol stream is subdivided into two parts. One is sent to a condensation particle counter (CPC) to measure particle number concentration, whereas the other one is sent to the QCM to measure the particle mass concentration simultaneously. Based on particle volume derived from size distribution data of the SMPS and mass concentration data obtained from the QCM, the mean effective density (ρeff) with uncertainty of inorganic salt particles (for particle count mean diameter (CMD) over a size range 10-478 nm), i.e. AS, SC and AN, is estimated to be 1.76 ± 0.24, 2.08 ± 0.19 and 1.69 ± 0.28 g cm-3, values which are comparable with the material density (ρ) values, 1.77, 2.17 and 1.72 g cm-3, respectively. Using this technique, the percentage contribution of error in the measurement of effective density is calculated to be in the range of 9-17 %. Among the individual uncertainty components, repeatability of particle mass obtained by the QCM, the QCM crystal frequency, CPC counting efficiency, and the equivalence of CPC- and QCM-derived volume are the major contributors to the expanded uncertainty (at k = 2) in comparison to other components, e.g. diffusion correction, charge correction, etc. Effective density for ambient particles at the beginning of the winter period in New Delhi was measured to be 1.28 ± 0.12 g cm-3
The EM Method in a Probabilistic Wavelet-Based MRI Denoising
2015-01-01
Human body heat emission and others external causes can interfere in magnetic resonance image acquisition and produce noise. In this kind of images, the noise, when no signal is present, is Rayleigh distributed and its wavelet coefficients can be approximately modeled by a Gaussian distribution. Noiseless magnetic resonance images can be modeled by a Laplacian distribution in the wavelet domain. This paper proposes a new magnetic resonance image denoising method to solve this fact. This method performs shrinkage of wavelet coefficients based on the conditioned probability of being noise or detail. The parameters involved in this filtering approach are calculated by means of the expectation maximization (EM) method, which avoids the need to use an estimator of noise variance. The efficiency of the proposed filter is studied and compared with other important filtering techniques, such as Nowak's, Donoho-Johnstone's, Awate-Whitaker's, and nonlocal means filters, in different 2D and 3D images. PMID:26089959
The EM Method in a Probabilistic Wavelet-Based MRI Denoising.
Martin-Fernandez, Marcos; Villullas, Sergio
2015-01-01
Human body heat emission and others external causes can interfere in magnetic resonance image acquisition and produce noise. In this kind of images, the noise, when no signal is present, is Rayleigh distributed and its wavelet coefficients can be approximately modeled by a Gaussian distribution. Noiseless magnetic resonance images can be modeled by a Laplacian distribution in the wavelet domain. This paper proposes a new magnetic resonance image denoising method to solve this fact. This method performs shrinkage of wavelet coefficients based on the conditioned probability of being noise or detail. The parameters involved in this filtering approach are calculated by means of the expectation maximization (EM) method, which avoids the need to use an estimator of noise variance. The efficiency of the proposed filter is studied and compared with other important filtering techniques, such as Nowak's, Donoho-Johnstone's, Awate-Whitaker's, and nonlocal means filters, in different 2D and 3D images.
A wavelet-based metric for visual texture discrimination with applications in evolutionary ecology.
Kiltie, R A; Fan, J; Laine, A F
1995-03-01
Much work on natural and sexual selection is concerned with the conspicuousness of visual patterns (textures) on animal and plant surfaces. Previous attempts by evolutionary biologists to quantify apparency of such textures have involved subjective estimates of conspicuousness or statistical analyses based on transect samples. We present a method based on wavelet analysis that avoids subjectivity and that uses more of the information in image textures than transects do. Like the human visual system for texture discrimination, and probably like that of other vertebrates, this method is based on localized analysis of orientation and frequency components of the patterns composing visual textures. As examples of the metric's utility, we present analyses of crypsis for tigers, zebras, and peppered moth morphs.
Effective wavelet-based compression method with adaptive quantization threshold and zerotree coding
NASA Astrophysics Data System (ADS)
Przelaskowski, Artur; Kazubek, Marian; Jamrogiewicz, Tomasz
1997-10-01
Efficient image compression technique especially for medical applications is presented. Dyadic wavelet decomposition by use of Antonini and Villasenor bank filters is followed by adaptive space-frequency quantization and zerotree-based entropy coding of wavelet coefficients. Threshold selection and uniform quantization is made on a base of spatial variance estimate built on the lowest frequency subband data set. Threshold value for each coefficient is evaluated as linear function of 9-order binary context. After quantization zerotree construction, pruning and arithmetic coding is applied for efficient lossless data coding. Presented compression method is less complex than the most effective EZW-based techniques but allows to achieve comparable compression efficiency. Specifically our method has similar to SPIHT efficiency in MR image compression, slightly better for CT image and significantly better in US image compression. Thus the compression efficiency of presented method is competitive with the best published algorithms in the literature across diverse classes of medical images.
Dafflon, Baptisite; Barrash, Warren; Cardiff, Michael A.; Johnson, Timothy C.
2011-12-15
Reliable predictions of groundwater flow and solute transport require an estimation of the detailed distribution of the parameters (e.g., hydraulic conductivity, effective porosity) controlling these processes. However, such parameters are difficult to estimate because of the inaccessibility and complexity of the subsurface. In this regard, developments in parameter estimation techniques and investigations of field experiments are still challenging and necessary to improve our understanding and the prediction of hydrological processes. Here we analyze a conservative tracer test conducted at the Boise Hydrogeophysical Research Site in 2001 in a heterogeneous unconfined fluvial aquifer. Some relevant characteristics of this test include: variable-density (sinking) effects because of the injection concentration of the bromide tracer, the relatively small size of the experiment, and the availability of various sources of geophysical and hydrological information. The information contained in this experiment is evaluated through several parameter estimation approaches, including a grid-search-based strategy, stochastic simulation of hydrological property distributions, and deterministic inversion using regularization and pilot-point techniques. Doing this allows us to investigate hydraulic conductivity and effective porosity distributions and to compare the effects of assumptions from several methods and parameterizations. Our results provide new insights into the understanding of variabledensity transport processes and the hydrological relevance of incorporating various sources of information in parameter estimation approaches. Among others, the variable-density effect and the effective porosity distribution, as well as their coupling with the hydraulic conductivity structure, are seen to be significant in the transport process. The results also show that assumed prior information can strongly influence the estimated distributions of hydrological properties.
NASA Astrophysics Data System (ADS)
ALkhazraji, Hasan; Salih, Mohammed Z.; Zhong, Zhengye; Mhaede, Mansour; Brokmeier, Hans-Günter; Wagner, Lothar; Schell, N.
2014-08-01
Cold rolling (CR) leads to a heavy changes in the crystallographic texture and microstructure, especially crystal defects, such as dislocations, and stacking faults increase. The microstructure evolution in commercially pure titanium (cp-Ti) deformed by CR at the room temperature was determined by using the synchrotron peak profile analysis of full width at half maximum (FWHM). The computer program ANIZC has been used for the calculation of diffraction contrast factors of dislocations in elastically anisotropic hexagonal crystals. The dislocation density has a minimum value at 40 pct reduction. The increase of the dislocation density at higher deformation levels is caused by the nucleation of new generation of dislocations from the crystallite grain boundaries. The high-cycle fatigue strength (HCF) has a maximum value at 80 pct reduction and it has a minimum value at 40 pct reduction in the commercially pure titanium.
NASA Astrophysics Data System (ADS)
Rajamane, N. P.; Nataraja, M. C.; Jeyalakshmi, R.; Nithiyanantham, S.
2016-02-01
Geopolymer concrete is zero-Portland cement concrete containing alumino-silicate based inorganic polymer as binder. The polymer is obtained by chemical activation of alumina and silica bearing materials, blast furnace slag by highly alkaline solutions such as hydroxide and silicates of alkali metals. Sodium hydroxide solutions of different concentrations are commonly used in making GPC mixes. Often, it is seen that sodium hydroxide solution of very high concentration is diluted with water to obtain SHS of desired concentration. While doing so it was observed that the solute particles of NaOH in SHS tend to occupy lower volumes as the degree of dilution increases. This aspect is discussed in this paper. The observed phenomenon needs to be understood while formulating the GPC mixes since this influences considerably the relationship between concentration and density of SHS. This paper suggests an empirical formula to relate density of SHS directly to concentration expressed by w/w.
Carbon pool densities and a first estimate of the total carbon pool in the Mongolian forest-steppe.
Dulamsuren, Choimaa; Klinge, Michael; Degener, Jan; Khishigjargal, Mookhor; Chenlemuge, Tselmeg; Bat-Enerel, Banzragch; Yeruult, Yolk; Saindovdon, Davaadorj; Ganbaatar, Kherlenchimeg; Tsogtbaatar, Jamsran; Leuschner, Christoph; Hauck, Markus
2016-02-01
The boreal forest biome represents one of the most important terrestrial carbon stores, which gave reason to intensive research on carbon stock densities. However, such an analysis does not yet exist for the southernmost Eurosiberian boreal forests in Inner Asia. Most of these forests are located in the Mongolian forest-steppe, which is largely dominated by Larix sibirica. We quantified the carbon stock density and total carbon pool of Mongolia's boreal forests and adjacent grasslands and draw conclusions on possible future change. Mean aboveground carbon stock density in the interior of L. sibirica forests was 66 Mg C ha(-1) , which is in the upper range of values reported from boreal forests and probably due to the comparably long growing season. The density of soil organic carbon (SOC, 108 Mg C ha(-1) ) and total belowground carbon density (149 Mg C ha(-1) ) are at the lower end of the range known from boreal forests, which might be the result of higher soil temperatures and a thinner permafrost layer than in the central and northern boreal forest belt. Land use effects are especially relevant at forest edges, where mean carbon stock density was 188 Mg C ha(-1) , compared with 215 Mg C ha(-1) in the forest interior. Carbon stock density in grasslands was 144 Mg C ha(-1) . Analysis of satellite imagery of the highly fragmented forest area in the forest-steppe zone showed that Mongolia's total boreal forest area is currently 73 818 km(2) , and 22% of this area refers to forest edges (defined as the first 30 m from the edge). The total forest carbon pool of Mongolia was estimated at ~ 1.5-1.7 Pg C, a value which is likely to decrease in future with increasing deforestation and fire frequency, and global warming.
Comparison of volumetric breast density estimations from mammography and thorax CT.
Geeraert, N; Klausz, R; Cockmartin, L; Muller, S; Bosmans, H; Bloch, I
2014-08-07
Breast density has become an important issue in current breast cancer screening, both as a recognized risk factor for breast cancer and by decreasing screening efficiency by the masking effect. Different qualitative and quantitative methods have been proposed to evaluate area-based breast density and volumetric breast density (VBD). We propose a validation method comparing the computation of VBD obtained from digital mammographic images (VBDMX) with the computation of VBD from thorax CT images (VBDCT). We computed VBDMX by applying a conversion function to the pixel values in the mammographic images, based on models determined from images of breast equivalent material. VBDCT is computed from the average Hounsfield Unit (HU) over the manually delineated breast volume in the CT images. This average HU is then compared to the HU of adipose and fibroglandular tissues from patient images. The VBDMX method was applied to 663 mammographic patient images taken on two Siemens Inspiration (hospL) and one GE Senographe Essential (hospJ). For the comparison study, we collected images from patients who had a thorax CT and a mammography screening exam within the same year. In total, thorax CT images corresponding to 40 breasts (hospL) and 47 breasts (hospJ) were retrieved. Averaged over the 663 mammographic images the median VBDMX was 14.7% . The density distribution and the inverse correlation between VBDMX and breast thickness were found as expected. The average difference between VBDMX and VBDCT is smaller for hospJ (4%) than for hospL (10%). This study shows the possibility to compare VBDMX with the VBD from thorax CT exams, without additional examinations. In spite of the limitations caused by poorly defined breast limits, the calibration of mammographic images to local VBD provides opportunities for further quantitative evaluations.
Comparison of volumetric breast density estimations from mammography and thorax CT
NASA Astrophysics Data System (ADS)
Geeraert, N.; Klausz, R.; Cockmartin, L.; Muller, S.; Bosmans, H.; Bloch, I.
2014-08-01
Breast density has become an important issue in current breast cancer screening, both as a recognized risk factor for breast cancer and by decreasing screening efficiency by the masking effect. Different qualitative and quantitative methods have been proposed to evaluate area-based breast density and volumetric breast density (VBD). We propose a validation method comparing the computation of VBD obtained from digital mammographic images (VBDMX) with the computation of VBD from thorax CT images (VBDCT). We computed VBDMX by applying a conversion function to the pixel values in the mammographic images, based on models determined from images of breast equivalent material. VBDCT is computed from the average Hounsfield Unit (HU) over the manually delineated breast volume in the CT images. This average HU is then compared to the HU of adipose and fibroglandular tissues from patient images. The VBDMX method was applied to 663 mammographic patient images taken on two Siemens Inspiration (hospL) and one GE Senographe Essential (hospJ). For the comparison study, we collected images from patients who had a thorax CT and a mammography screening exam within the same year. In total, thorax CT images corresponding to 40 breasts (hospL) and 47 breasts (hospJ) were retrieved. Averaged over the 663 mammographic images the median VBDMX was 14.7% . The density distribution and the inverse correlation between VBDMX and breast thickness were found as expected. The average difference between VBDMX and VBDCT is smaller for hospJ (4%) than for hospL (10%). This study shows the possibility to compare VBDMX with the VBD from thorax CT exams, without additional examinations. In spite of the limitations caused by poorly defined breast limits, the calibration of mammographic images to local VBD provides opportunities for further quantitative evaluations.
Technology Transfer Automated Retrieval System (TEKTRAN)
Resolving uncertainty in the carbon cycle is paramount to refining climate predictions. Soil organic carbon (SOC) is a major component of terrestrial C pools, and accuracy of SOC estimates are only as good as the measurements and assumptions used to obtain them. Dryland soils account for a substanti...
Consequences of Ignoring Guessing when Estimating the Latent Density in Item Response Theory
ERIC Educational Resources Information Center
Woods, Carol M.
2008-01-01
In Ramsay-curve item response theory (RC-IRT), the latent variable distribution is estimated simultaneously with the item parameters. In extant Monte Carlo evaluations of RC-IRT, the item response function (IRF) used to fit the data is the same one used to generate the data. The present simulation study examines RC-IRT when the IRF is imperfectly…
Comparing three methods for variance estimation with duplicated high density oligonucleotide arrays.
Huang, Xiaohong; Pan, Wei
2002-08-01
Microarray experiments are being increasingly used in molecular biology. A common task is to detect genes with differential expression across two experimental conditions, such as two different tissues or the same tissue at two time points of biological development. To take proper account of statistical variability, some statistical approaches based on the t-statistic have been proposed. In constructing the t-statistic, one needs to estimate the variance of gene expression levels. With a small number of replicated array experiments, the variance estimation can be challenging. For instance, although the sample variance is unbiased, it may have large variability, leading to a large mean squared error. For duplicated array experiments, a new approach based on simple averaging has recently been proposed in the literature. Here we consider two more general approaches based on nonparametric smoothing. Our goal is to assess the performance of each method empirically. The three methods are applied to a colon cancer data set containing 2,000 genes. Using two arrays, we compare the variance estimates obtained from the three methods. We also consider their impact on the t-statistics. Our results indicate that the three methods give variance estimates close to each other. Due to its simplicity and generality, we recommend the use of the smoothed sample variance for data with a small number of replicates.
NASA Astrophysics Data System (ADS)
Mohd Salleh, M. R.; Rahman, M. Z. Abdul; Abu Bakar, M. A.; Rasib, A. W.; Omar, H.
2016-09-01
This paper presents a framework to estimate aerodynamic roughness over specific height (zo/H) and zero plane displacement (d/H) over various landscapes in Kelantan State using airborne LiDAR data. The study begins with the filtering of airborne LiDAR, which produced ground and non-ground points. The ground points were used to generate digital terrain model (DTM) while the non-ground points were used for digital surface model (DSM) generation. Canopy height model (CHM) was generated by subtracting DTM from DSM. Individual trees in the study area were delineated by applying the Inverse Watershed segmentation method on the CHM. Forest structural parameters including tree height, height to crown base (HCB) and diameter at breast height (DBH) were estimated using existing allometric equations. The airborne LiDAR data was divided into smaller areas, which correspond to the size of the zo/H and d/H maps i.e. 50 m and 100 m. For each area individual tree were reconstructed based on the tree properties, which accounts overlapping between crowns and trunks. The individual tree models were used to estimate individual tree frontal area and the total frontal area over a specific ground surface. Finally, three roughness models were used to estimate zo/H and d/H for different wind directions, which were assumed from North/South and East/West directions. The results were shows good agreements with previous studies that based on the wind tunnel experiments.
Estimation of Neutral Density in Edge Plasma with Double Null Configuration in EAST
NASA Astrophysics Data System (ADS)
Zhang, Ling; Xu, Guosheng; Ding, Siye; Gao, Wei; Wu, Zhenwei; Chen, Yingjie; Huang, Juan; Liu, Xiaoju; Zang, Qing; Chang, Jiafeng; Zhang, Wei; Li, Yingying; Qian, Jinping
2011-08-01
In this work, population coefficients of hydrogen's n = 3 excited state from the hydrogen collisional-radiative (CR) model, from the data file of DEGAS 2, are used to calculate the photon emissivity coefficients (PECs) of hydrogen Balmer-α (n = 3 → n = 2) (Hα). The results are compared with the PECs from Atomic Data and Analysis Structure (ADAS) database, and a good agreement is found. A magnetic surface-averaged neutral density profile of typical double-null (DN) plasma in EAST is obtained by using FRANTIC, the 1.5-D fluid transport code. It is found that the sum of integral Dα and Hα emission intensity calculated via the neutral density agrees with the measured results obtained by using the absolutely calibrated multi-channel poloidal photodiode array systems viewing the lower divertor at the last closed flux surface (LCFS). It is revealed that the typical magnetic surface-averaged neutral density at LCFS is about 3.5 × 1016 m-3.
Estimating the density of intermediate size KBOs from considerations of volatile retention
NASA Astrophysics Data System (ADS)
Levi, Amit; Podolak, Morris
2011-07-01
By using a hydrodynamic atmospheric escape mechanism (Levi, A., Podolak, M. [2009]. Icarus 202, 681-693) we show how the unusually high mass density of Quaoar could have been predicted (constrained), without any knowledge of a binary companion. We suggest an explanation of the recent spectroscopic observations of Orcus and Charon [Delsanti, A., Merlin, F., Guilbert, A., Bauer, J., Yang, B., Meech, K.J., 2010. Astron. Astrophys. 520, A40; Cook, J.C., Desch, S.J., Roush, T.L., Trujillo, C.A., Geballe, T.R., 2007. Astrophys. J. 663, 1406-1419]. We present a simple relation between the detection of certain volatile ices and the body mass density and diameter. As a test case we implement the relations on the KBO 2003 AZ 84 and give constraints on its mass density. We also present a method of relating the latitude-dependence of hydrodynamic gas escape to the internal structure of a rapidly rotating body and apply it to Haumea.
NASA Astrophysics Data System (ADS)
Sarangi, B.; Aggarwal, S. G.; Sinha, D.; Gupta, P. K.
2015-12-01
In this work, we have used scanning mobility particle sizer (SMPS) and quartz crystal microbalance (QCM) to estimate the effective density of aerosol particles. This approach is tested for aerosolized particles generated from the solution of standard materials of known density, i.e. ammonium sulfate (AS), ammonium nitrate (AN) and sodium chloride (SC), and also applied for ambient measurement in New Delhi. We also discuss uncertainty involved in the measurement. In this method, dried particles are introduced in to a differential mobility analyzer (DMA), where size segregation was done based on particle electrical mobility. At the downstream of DMA, the aerosol stream is subdivided into two parts. One is sent to a condensation particle counter (CPC) to measure particle number concentration, whereas other one is sent to QCM to measure the particle mass concentration simultaneously. Based on particle volume derived from size distribution data of SMPS and mass concentration data obtained from QCM, the mean effective density (ρeff) with uncertainty of inorganic salt particles (for particle count mean diameter (CMD) over a size range 10 to 478 nm), i.e. AS, SC and AN is estimated to be 1.76 ± 0.24, 2.08 ± 0.19 and 1.69 ± 0.28 g cm-3, which are comparable with the material density (ρ) values, 1.77, 2.17 and 1.72 g cm-3, respectively. Among individual uncertainty components, repeatability of particle mass obtained by QCM, QCM crystal frequency, CPC counting efficiency, and equivalence of CPC and QCM derived volume are the major contributors to the expanded uncertainty (at k = 2) in comparison to other components, e.g. diffusion correction, charge correction, etc. Effective density for ambient particles at the beginning of winter period in New Delhi is measured to be 1.28 ± 0.12 g cm-3. It was found that in general, mid-day effective density of ambient aerosols increases with increase in CMD of particle size measurement but particle photochemistry is an important
NASA Astrophysics Data System (ADS)
Priyatikanto, R.; Arifyanto, M. I.
2015-01-01
Stellar membership determination of an open cluster is an important process to do before further analysis. Basically, there are two classes of membership determination method: parametric and non-parametric. In this study, an alternative of non-parametric method based on Binned Kernel Density Estimation that accounts measurements errors (simply called BKDE- e) is proposed. This method is applied upon proper motions data to determine cluster's membership kinematically and estimate the average proper motions of the cluster. Monte Carlo simulations show that the average proper motions determination using this proposed method is statistically more accurate than ordinary Kernel Density Estimator (KDE). By including measurement errors in the calculation, the mode location from the resulting density estimate is less sensitive to non-physical or stochastic fluctuation as compared to ordinary KDE that excludes measurement errors. For the typical mean measurement error of 7 mas/yr, BKDE- e suppresses the potential of miscalculation by a factor of two compared to KDE. With median accuracy of about 93 %, BKDE- e method has comparable accuracy with respect to parametric method (modified Sanders algorithm). Application to real data from The Fourth USNO CCD Astrograph Catalog (UCAC4), especially to NGC 2682 is also performed. The mode of member stars distribution on Vector Point Diagram is located at μ α cos δ=-9.94±0.85 mas/yr and μ δ =-4.92±0.88 mas/yr. Although the BKDE- e performance does not overtake parametric approach, it serves a new view of doing membership analysis, expandable to astrometric and photometric data or even in binary cluster search.
Gaussian wavelet based dynamic filtering (GWDF) method for medical ultrasound systems.
Wang, Peidong; Shen, Yi; Wang, Qiang
2007-05-01
In this paper, a novel dynamic filtering method using Gaussian wavelet filters is proposed to remove noise from ultrasound echo signal. In the proposed method, a mother wavelet is first selected with its central frequency (CF) and frequency bandwidth (FB) equal to those of the transmitted signal. The actual frequency of the received signal at a given depth is estimated through the autocorrelation technique. Then the mother wavelet is dilated using the ratio between the transmitted central frequency and the actual frequency as the scale factor. The generated daughter wavelet is finally used as the dynamic filter at this depth. Frequency-demodulated Gaussian wavelet is chosen in this paper because its power spectrum is well-matched with that of the transmitted ultrasound signal. The proposed method is evaluated by simulations using Field II program. Experiments are also conducted out on a standard ultrasound phantom using a 192-element transducer with the center frequency of 5 MHz. The phantom contains five point targets, five circular high scattering regions with diameters of 2, 3, 4, 5, 6 mm respectively, and five cysts with diameters of 6, 5, 4, 3, 2 mm respectively. Both simulation and experimental results show that optimal signal-to-noise ratio (SNR) can be obtained and useful information can be extracted along the depth direction irrespective of the diagnostic objects.
NASA Astrophysics Data System (ADS)
Nishiyama, Takanori; Nakamura, Takuji; Tsutsumi, Masaki; Tanaka, Yoshi; Nishimura, Koji; Sato, Kaoru; Tomikawa, Yoshihiro; Kohma, Masashi
2016-07-01
Polar Mesosphere Winter Echo (PMWE) is known as back scatter echo from 55 to 85 km in the mesosphere, and it has been observed by MST and IS radar in polar region during non-summer period. Since density of free electrons as scatterer is low in the dark mesosphere during winter, it is suggested that PMWE requires strong ionization of neutral atmosphere associated with Energetic Particles Precipitations (EPPs) during Solar Proton Events [Kirkwood et al., 2002] or during geomagnetically disturbed periods [Nishiyama et al., 2015]. However, studies on relationship between occurrence of PMWE and background electron density has been limited yet [Lübken et al., 2006], partly because the PMWE occurrence rate is known to be quite low (2.9%) [Zeller et al., 2006]. The PANSY (Program of the Antarctic Syowa MST/IS) radar, which is the largest MST radar in Antarctica, observed many PMWE events since it has started mesosphere observations in June 2012. We established an application method of the PANSY radar as riometer, which makes it possible to estimate Cosmic Noise Absorptions (CNA) as proxy of relative variations on background electron density. In addition, electron density profiles from 60 to 150 km altitude are calculated by Ionospheric Model for the Auroral Zone (IMAZ) [McKinnell and Friedrich, 2007] and CNA estimated by the PANSY radar. In this presentation, we would like to focus on strong PMWE during two big geomagnetic storm events, St. Patrick's Day and the Summer Solstice 2015 Event, in order to compare observed PMWE characteristics to model background electron density. On March 19 and 22, recovery phase of St. Patrick's Day Storm, sudden PMWE intensification was detected near 60 km by the PANSY radar. At the same time, strong Cosmic Noise Absorptions (CNA) of 0.8 dB and 1.0 dB were measured, respectively. However, calculated electron density profiles did not show high electron density at the altitude where the PMWE intensification were observed. On June 22, the
Wavelet-based automatic determination of the P- and S-wave arrivals
NASA Astrophysics Data System (ADS)
Bogiatzis, P.; Ishii, M.
2013-12-01
The detection of P- and S-wave arrivals is important for a variety of seismological applications including earthquake detection and characterization, and seismic tomography problems such as imaging of hydrocarbon reservoirs. For many years, dedicated human-analysts manually selected the arrival times of P and S waves. However, with the rapid expansion of seismic instrumentation, automatic techniques that can process a large number of seismic traces are becoming essential in tomographic applications, and for earthquake early-warning systems. In this work, we present a pair of algorithms for efficient picking of P and S onset times. The algorithms are based on the continuous wavelet transform of the seismic waveform that allows examination of a signal in both time and frequency domains. Unlike Fourier transform, the basis functions are localized in time and frequency, therefore, wavelet decomposition is suitable for analysis of non-stationary signals. For detecting the P-wave arrival, the wavelet coefficients are calculated using the vertical component of the seismogram, and the onset time of the wave is identified. In the case of the S-wave arrival, we take advantage of the polarization of the shear waves, and cross-examine the wavelet coefficients from the two horizontal components. In addition to the onset times, the automatic picking program provides estimates of uncertainty, which are important for subsequent applications. The algorithms are tested with synthetic data that are generated to include sudden changes in amplitude, frequency, and phase. The performance of the wavelet approach is further evaluated using real data by comparing the automatic picks with manual picks. Our results suggest that the proposed algorithms provide robust measurements that are comparable to manual picks for both P- and S-wave arrivals.
NASA Technical Reports Server (NTRS)
Sjoegreen, B.; Yee, H. C.
2001-01-01
The recently developed essentially fourth-order or higher low dissipative shock-capturing scheme of Yee, Sandham and Djomehri (1999) aimed at minimizing nu- merical dissipations for high speed compressible viscous flows containing shocks, shears and turbulence. To detect non smooth behavior and control the amount of numerical dissipation to be added, Yee et al. employed an artificial compression method (ACM) of Harten (1978) but utilize it in an entirely different context than Harten originally intended. The ACM sensor consists of two tuning parameters and is highly physical problem dependent. To minimize the tuning of parameters and physical problem dependence, new sensors with improved detection properties are proposed. The new sensors are derived from utilizing appropriate non-orthogonal wavelet basis functions and they can be used to completely