Parameter Optimization of PAL-XFEL Injector

NASA Astrophysics Data System (ADS)

Lee, Jaehyun; Ko, In Soo; Han, Jang-Hui; Hong, Juho; Yang, Haeryong; Min, Chang Ki; Kang, Heung-Sik

2018-05-01

A photoinjector is used as the electron source to generate a high peak current and low emittance beam for an X-ray free electron laser (FEL). The beam emittance is one of the critical parameters to determine the FEL performance together with the slice energy spread and the peak current. The Pohang Accelerator Laboratory X-ray Free Electron Laser (PAL-XFEL) was constructed in 2015, and the beam commissioning was carried out in spring 2016. The injector is running routinely for PAL-XFEL user operation. The operational parameters of the injector have been optimized experimentally, and these are somewhat different from the originally designed ones. Therefore, we study numerically the injector parameters based on the empirically optimized parameters and review the present operating condition.

Three-dimensional reconstruction for coherent diffraction patterns obtained by XFEL.

PubMed

Nakano, Miki; Miyashita, Osamu; Jonic, Slavica; Song, Changyong; Nam, Daewoong; Joti, Yasumasa; Tama, Florence

2017-07-01

The three-dimensional (3D) structural analysis of single particles using an X-ray free-electron laser (XFEL) is a new structural biology technique that enables observations of molecules that are difficult to crystallize, such as flexible biomolecular complexes and living tissue in the state close to physiological conditions. In order to restore the 3D structure from the diffraction patterns obtained by the XFEL, computational algorithms are necessary as the orientation of the incident beam with respect to the sample needs to be estimated. A program package for XFEL single-particle analysis based on the Xmipp software package, that is commonly used for image processing in 3D cryo-electron microscopy, has been developed. The reconstruction program has been tested using diffraction patterns of an aerosol nanoparticle obtained by tomographic coherent X-ray diffraction microscopy.

Atomistic Simulations of High-intensity XFEL Pulses on Diffractive Imaging of Nano-sized System Dynamics

NASA Astrophysics Data System (ADS)

Ho, Phay; Knight, Christopher; Bostedt, Christoph; Young, Linda; Tegze, Miklos; Faigel, Gyula

2016-05-01

We have developed a large-scale atomistic computational method based on a combined Monte Carlo and Molecular Dynamics (MC/MD) method to simulate XFEL-induced radiation damage dynamics of complex materials. The MD algorithm is used to propagate the trajectories of electrons, ions and atoms forward in time and the quantum nature of interactions with an XFEL pulse is accounted for by a MC method to calculate probabilities of electronic transitions. Our code has good scalability with MPI/OpenMP parallelization, and it has been run on Mira, a petascale system at the Argonne Leardership Computing Facility, with particle number >50 million. Using this code, we have examined the impact of high-intensity 8-keV XFEL pulses on the x-ray diffraction patterns of argon clusters. The obtained patterns show strong pulse parameter dependence, providing evidence of significant lattice rearrangement and diffuse scattering. Real-space electronic reconstruction was performed using phase retrieval methods. We found that the structure of the argon cluster can be recovered with atomic resolution even in the presence of considerable radiation damage. This work was supported by the US Department of Energy, Office of Science, Office of Basic Energy Sciences, Chemical Sciences, Geosciences, and Biosciences Division.

Tapered undulator for SASE FELs

DOE Office of Scientific and Technical Information (OSTI.GOV)

Fawley, William M.; Huang, Zhirong; Kim, Kwang-Je

We discuss the use of tapered undulators to enhance the performance of free-electron lasers (FELs) based upon self-amplified spontaneous emission (SASE), where the radiation tends to have a relatively broad bandwidth, limited temporal phase coherence, and large amplitude fluctuations. Using the polychromatic FEL simulation code GINGER, we numerically demonstrate the effectiveness of a tapered undulator for parameters corresponding to the existing Argonne low-energy undulator test line (LEUTL) FEL. We also study possible tapering options for proposed x-ray FELs such as the Linac Coherent Light Source (LCLS).

INTRA-UNDULATOR MEASUREMENTS AT VISA FEL.

DOE Office of Scientific and Technical Information (OSTI.GOV)

MUROKH,A.; FRIGOLA,P.; ET AL

2000-08-13

We describe a diagnostics system developed, to measure exponential gain properties and the electron beam dynamics inside the strong focusing 4-m long undulator for the VISA (Visible to Infrared SASE Amplifier) FEL. The technical challenges included working inside the small undulator gap, optimizing the electron beam diagnostics in the high background environment of the spontaneous undulator radiation, multiplexing and transporting the photon beam. Initial results are discussed.

Intra-undulator measurements at VISA FEL

DOE Office of Scientific and Technical Information (OSTI.GOV)

Murokh, A; Frigola, P; Pellegrini, C

2000-08-10

We describe a diagnostics system developed, to measure exponential gain properties and the electron beam dynamics inside the strong focusing 4-m long undulator for the VISA (Visible to Infrared SASE Amplifier) FEL. The technical challenges included working inside the small undulator gap, optimizing the electron beam diagnostics in the high background environment of the spontaneous undulator radiation, multiplexing and transporting the photon beam. Initial results are discussed.

High-temperature superconducting undulator magnets

DOE PAGES

Kesgin, Ibrahim; Kasa, Matthew; Ivanyushenkov, Yury; ...

2017-02-13

Here, this paper presents test results on a prototype superconducting undulator magnet fabricated using 15% Zr-doped rare-earth barium copper oxide high temperature superconducting (HTS) tapes. On an 11-pole magnet we demonstrate an engineering current density, J e, of more than 2.1 kA mm -2 at 4.2 K, a value that is 40% higher than reached in comparable devices wound with NbTi-wire, which is used in all currently operating superconducting undulators. A novel winding scheme enabling the continuous winding of tape-shaped conductors into the intricate undulator magnets as well as a partial interlayer insulation procedure were essential in reaching this advancemore » in performance. Currently, there are rapid advances in the performance of HTS; therefore, achieving even higher current densities in an undulator structure or/and operating it at temperatures higher than 4.2 K will be possible, which would substantially simplify the cryogenic design and reduce overall costs.« less

Development of new S-band SLED for PAL-XFEL Linac

NASA Astrophysics Data System (ADS)

Joo, Youngdo; Park, Yongjung; Heo, Hoon; Heo, Jinyul; Park, Sung-Soo; Kim, Sang-Hee; Kim, Kwang-Hoon; Kang, Heung-Sik; Lee, Heung-Soo; Noh, Sungju; Oh, Kyoungmin

2017-01-01

In order to achieve beam acceleration to the beam energy of 10 GeV at the end of its 716 m-long linear accelerator (Linac), the Pohang Accelerator Laboratory X-ray Free Electron Laser (PAL-XFEL) is going to operate the Stanford Linear Accelerator Energy Doubler (SLED) at the maximum klystron output peak power of 80 MW, with a pulse length of 4 μs, and at a repetition rate of 60 Hz. The original SLED that had been used in Pohang Light Source-II (PLS-II) can no longer sustain such a high-power operation because excessive radiation caused by RF breakdown has been frequently detected even at the lower klystron peak power during the PLS-II operation. Therefore, a new SLED is designed by modifying both the 3-dB power hybrid and the waveguide-cavity coupling structure of the original SLED where the excessive radiation has been mainly detected. The finite-difference time-domain (FDTD) simulation in the CST Microwave Studio shows that the new SLED has a peak electric field and a surface current lower than those of the original SLED at the same level of the RF input peak power, which would secure stable high-power operation. All of the 42 SLEDs in the PAL-XFEL Linac are newly fabricated and installed. During the RF conditioning of the PAL-XFEL Linac, no significant vacuum and radiation issue was found in the new SLEDs. Finally, the accelerated electron beam energy of 10 GeV obtained at the end of the PAL-XFEL Linac verified that the RF performance of the new SLED is stable.

Solid state modulator for klystron power supply XFEL TDS INJ

NASA Astrophysics Data System (ADS)

Zavadtsev, A. A.; Zavadtsev, D. A.; Zybin, D. A.; Churanov, D. V.; Shemarykin, P. V.

2016-09-01

The transverse deflecting system XFEL TDS INJ for European X-ray Free Electron Laser includes power supply for the CPI VKS-8262HS klystron. It has been designed for pulse high-voltage, cathode heating, solenoid and klystron ion pump. The klystron power supply includes solid state modulator, pulse transformer, controlled power supply for cathode heating and commercial power supplies for solenoid and ion pump. Main parameters of the modulator are 110 kV of peak voltage, 72 A peak current, and pulse length up to 6 μs. The klystron power supply has been developed, designed, manufactured, tuned, tested and installed in the XFEL building. All designed parameters are satisfied.

Transverse gradient in Apple-type undulators

PubMed Central

Calvi, M.; Camenzuli, C.; Prat, E.; Schmidt, Th.

2017-01-01

Apple-type undulators are globally recognized as the most flexible devices for the production of variable polarized light in the soft X-ray regime, both at synchrotron and free-electron laser facilities. Recently, the implementation of transverse gradient undulators has been proposed to enhance the performance of new generation light sources. In this paper it is demonstrated that Apple undulators do not only generate linear and elliptical polarized light but also variable transverse gradient under certain conditions. A general theoretical framework is introduced to evaluate the K-value and its transverse gradient for an Apple undulator, and formulas for all regular operational modes and different Apple types (including the most recent Delta type and Apple X) are calculated and critically discussed. PMID:28452751

Focusing X-ray free-electron laser pulses using Kirkpatrick-Baez mirrors at the NCI hutch of the PAL-XFEL.

PubMed

Kim, Jangwoo; Kim, Hyo Yun; Park, Jaehyun; Kim, Sangsoo; Kim, Sunam; Rah, Seungyu; Lim, Jun; Nam, Ki Hyun

2018-01-01

The Pohang Accelerator Laboratory X-ray Free-Electron Laser (PAL-XFEL) is a recently commissioned X-ray free-electron laser (XFEL) facility that provides intense ultrashort X-ray pulses based on the self-amplified spontaneous emission process. The nano-crystallography and coherent imaging (NCI) hutch with forward-scattering geometry is located at the hard X-ray beamline of the PAL-XFEL and provides opportunities to perform serial femtosecond crystallography and coherent X-ray diffraction imaging. To produce intense high-density XFEL pulses at the interaction positions between the X-rays and various samples, a microfocusing Kirkpatrick-Baez (KB) mirror system that includes an ultra-precision manipulator has been developed. In this paper, the design of a KB mirror system that focuses the hard XFEL beam onto a fixed sample point of the NCI hutch, which is positioned along the hard XFEL beamline, is described. The focusing system produces a two-dimensional focusing beam at approximately 2 µm scale across the 2-11 keV photon energy range. XFEL pulses of 9.7 keV energy were successfully focused onto an area of size 1.94 µm × 2.08 µm FWHM.

Geoid undulation accuracy

NASA Technical Reports Server (NTRS)

Rapp, Richard H.

1993-01-01

The determination of the geoid and equipotential surface of the Earth's gravity field, has long been of interest to geodesists and oceanographers. The geoid provides a surface to which the actual ocean surface can be compared with the differences implying information on the circulation patterns of the oceans. For use in oceanographic applications the geoid is ideally needed to a high accuracy and to a high resolution. There are applications that require geoid undulation information to an accuracy of +/- 10 cm with a resolution of 50 km. We are far from this goal today but substantial improvement in geoid determination has been made. In 1979 the cumulative geoid undulation error to spherical harmonic degree 20 was +/- 1.4 m for the GEM10 potential coefficient model. Today the corresponding value has been reduced to +/- 25 cm for GEM-T3 or +/- 11 cm for the OSU91A model. Similar improvements are noted by harmonic degree (wave-length) and in resolution. Potential coefficient models now exist to degree 360 based on a combination of data types. This paper discusses the accuracy changes that have taken place in the past 12 years in the determination of geoid undulations.

The European XFEL Free Electron Laser at DESY

ScienceCinema

Weise, Hans [Deutsches Elektronen-Synchrotron, Germany

2017-12-09

The European X-ray Free-Electron laser Facility (XFEL) is going to be built in an international collaboration at the Deutsches Elektronen-Synchrotron (DESY), Germany, and the Technical Design Report was published in 2006. The official project is expected for summer 2007. This new facility will offer photon beams at wavelengths as short as 1 angstrom with highest peak brilliance being more than 100 million times higher than present day synchrotron radiation sources. The radiation has a high degree of transverse coherence and the pulse duration is reduced from {approx}100 picoseconds (typ. for SR light sources) down to the {approx}10 femtosecond time domain. The overall layout of the XFEL will be described. This includes the envisaged operation parameters for the linear accelerator using superconducting TESLA technology. The complete design is based on the actually operated FLASH free-electron laser at DESY. Experience with the operation during first long user runs at wavelengths from 30 to 13 nm will be described in detail.

The Tapered Hybrid Undulator (THUNDER) of the visible free-electron laser oscillator experiment

DOE Office of Scientific and Technical Information (OSTI.GOV)

Robinson, K.E.; Quimby, D.C.; Slater, J.M.

A 5 m tapered hybrid undulator (THUNDER) has been designed and built as part of the Boeing Aerospace Company and Spectra Technology, Inc. visible free-electron laser (FEL) oscillator experiment. The performance goals required of an undulator for a visible oscillator with large extraction are ambitious. They require the establishment of stringent magnetic field quality tolerances which impact design and fabrication techniques. The performance goals of THUNDER are presented. The tolerances resulting from the FEL interaction are contrasted and compared to those of a synchrotron radiation source. The design, fabrication, and field measurements are discussed. The performance of THUNDER serves asmore » a benchmark for future wiggler/undulator design for advanced FEL's and synchrotron radiation sources.« less

Simple Method to Generate Terawatt-Attosecond X-Ray Free-Electron-Laser Pulses.

PubMed

Prat, Eduard; Reiche, Sven

2015-06-19

X-ray free-electron lasers (XFELs) are cutting-edge research tools that produce almost fully coherent radiation with high power and short-pulse length with applications in multiple science fields. There is a strong demand to achieve even shorter pulses and higher radiation powers than the ones obtained at state-of-the-art XFEL facilities. In this context we propose a novel method to generate terawatt-attosecond XFEL pulses, where an XFEL pulse is pushed through several short good-beam regions of the electron bunch. In addition to the elements of conventional XFEL facilities, the method uses only a multiple-slotted foil and small electron delays between undulator sections. Our scheme is thus simple, compact, and easy to implement both in already operating as well as future XFEL projects. We present numerical simulations that confirm the feasibility and validity of our proposal.

Concept of quasi-periodic undulator - control of radiation spectrum

DOE Office of Scientific and Technical Information (OSTI.GOV)

Sasaki, Shigemi

1995-02-01

A new type of undulator, the quasi-periodic undulator (QPU) is considered which generates the irrational harmonics in the radiation spectrum. This undulator consists of the arrays of magnet blocks aligned in a quasi-periodic order, and consequentially lead to a quasi-periodic motion of electron. A combination of the QPU and a conventional crystal/grating monochromator provides pure monochromatic photon beam for synchrotron radiation users because the irrational harmonics do not be diffracted in the same direction by a monochromator. The radiation power and width of each radiation peak emitted from this undulator are expected to be comparable with those of the conventionalmore » periodic undulator.« less

Bringing PW-class lasers to XFELs (Conference Presentation)

NASA Astrophysics Data System (ADS)

Tomizawa, Hiromitsu

2017-06-01

Experimental researches using high power optical lasers combined with free electron lasers (FELs) open new frontiers in high energy density (HED) sciences. Probing and pumping capabilities are dramatically improved due to the brightness of the XFEL pulses with ultrafast duration. Besides, the peak intensities of Ti:sapphire laser Chirped Pulse Amplification (CPA) systems reach petawatt (PW)-class with operating in few tens of fs and commercially available at a few Hz of repetition rate. We have been developing an experimental platform for HED sciences using high power, high intensity optical lasers at the XFEL facility, SACLA.Currently, an experimental platform with a dual 0.5 PW Ti:Sapphire laser system is under beam commissioning for experiments combined with the SACLA's x-ray beam for research objectives that require more peak power in the optical laser pulses with a few tens of fs. The optical laser system is designed to deliver two laser beams simultaneously with the maximum power of 0.5 PW in each into a target chamber located in an experimental hutch 6 (EH6) at BL2, which was recently commissioned as a SACLA's 2nd hard x-ray beamline. A focusing capability using sets of compound refractive lenses will be applied to increase the x-ray fluence on the target sample. One of the most key issues for the integrated experimental platform is development of diagnostics that meets requirements both from the high power laser (e.g. resistance to harsh environments) and from the XFEL (e.g. adaptation to the available data acquisition system). The status and future perspective of the development including automatic laser alignment systems will be reported in the presentation. We will discuss the most promising and important new physics experiments that will be enabled by the combination of PW-class lasers and the world-class FEL's x-ray beam.

Status of the laboratory infrastructure for detector calibration and characterization at the European XFEL

NASA Astrophysics Data System (ADS)

Raab, N.; Ballak, K.-E.; Dietze, T.; Ekmedzič, M.; Hauf, S.; Januschek, F.; Kaukher, A.; Kuster, M.; Lang, P. M.; Münnich, A.; Schmitt, R.; Sztuk-Dambietz, J.; Turcato, M.

2016-12-01

The European X-ray Free Electron Laser (XFEL.EU) will provide unprecedented peak brilliance and ultra-short and spatially coherent X-ray pulses in an energy range of 0.25 to 25 keV . The pulse timing structure is unique with a burst of 2700 pulses of 100 fs length at a temporal distance of 220 ns followed by a 99.4 ms gap. To make optimal use of this timing structure and energy range a great variety of detectors are being developed for use at XFEL.EU, including 2D X-ray imaging cameras that are able to detect images at a rate of 4.5 MHz, provide dynamic ranges up to 105 photons per pulse per pixel under different operating conditions and covering a large range of angular resolution \\cite{requirements,Markus}. In order to characterize, commission and calibrate this variety of detectors and for testing of detector prototypes the XFEL.EU detector group is building up an X-ray test laboratory that allows testing of detectors with X-ray photons under conditions that are as similar to the future beam line conditions at the XFEL.EU as is possible with laboratory sources [1]. A total of four test environments provide the infrastructure for detector tests and calibration: two portable setups that utilize low power X-ray sources and radioactive isotopes, a test environment where a commercial high power X-ray generator is in use, and a pulsed X-ray/electron source which will provide pulses as short as 25 ns in XFEL.EU burst mode combined with target anodes of different materials. The status of the test environments, three of which are already in use while one is in commissioning phase, will be presented as well as first results from performance tests and characterization of the sources.

Radiation characteristics and polarisation of undulated microstrip line antennas

NASA Astrophysics Data System (ADS)

Shafai, L.; Sebak, A. A.

1985-12-01

A numerical method is used to investigate the radiation from undulated microstrip line antennas. The undulated line is assumed to be suspended over a ground plane and its current distribution is determined using a moment method type solution. This current distribution is then used to compute the co-polar and cross-polar radiation fields. It is found that the current distribution has an oscillating behavior along the line, with a frequency which is twice the number of undulations. The cross-polarization is found to be high and relatively independent of the undulating shape. Its relative level, however, is reduced for large arrays, due to the array factor affecting the co-polar field. A procedure for the reduction or elimination of the cross-polarization is then proposed, which is based on utilizing two undulated lines with mutually inverted undulations. A design method for achieving low sidelobe levels is also proposed and a design example with sidelobes around the -40 dB range is presented.

Online & Offline data storage and data processing at the European XFEL facility

NASA Astrophysics Data System (ADS)

Gasthuber, Martin; Dietrich, Stefan; Malka, Janusz; Kuhn, Manuela; Ensslin, Uwe; Wrona, Krzysztof; Szuba, Janusz

2017-10-01

For the upcoming experiments at the European XFEL light source facility, a new online and offline data processing and storage infrastructure is currently being built and verified. Based on the experience of the system being developed for the Petra III light source at DESY, presented at the last CHEP conference, we further develop the system to cope with the much higher volumes and rates ( 50GB/sec) together with a more complex data analysis and infrastructure conditions (i.e. long range InfiniBand connections). This work will be carried out in collaboration of DESY/IT, European XFEL and technology support from IBM/Research. This presentation will shortly wrap up the experience of 1 year runtime of the PetraIII ([3]) system, continue with a short description of the challenges for the European XFEL ([2]) experiments and the main section, showing the proposed system for online and offline with initial result from real implementation (HW & SW). This will cover the selected cluster filesystem GPFS ([5]) including Quality of Service (QOS), extensive use of flash based subsystems and other new and unique features this architecture will benefit from.

Proposal of a Bulk HTSC Staggered Array Undulator

DOE Office of Scientific and Technical Information (OSTI.GOV)

Kii, Toshiteru; Kinjo, Ryota; Bakr, Mahmoud A.

We proposed a new type of undulator based on bulk high-T{sub c} superconductors (HTSC) which consists of a single solenoid and a stacked array of bulk HTSC. The main advantage of this configuration is that a mechanical structure is not required to produce and control the undulator field. In order to perform a proof of principle experiment, we have developed a prototype of bulk HTSC staggered array undulator using 11 pairs of DyBaCuO bulk superconductors and a normal conducting solenoid. Experimental results obtained by using the prototype undulator and numerical results obtained by a loop current model based on themore » Bean mode for a type-II superconductor were compared.« less

Geoid undulation computations at laser tracking stations

NASA Technical Reports Server (NTRS)

Despotakis, Vasilios K.

1987-01-01

Geoid undulation computations were performed at 29 laser stations distributed around the world using a combination of terrestrial gravity data within a cap of radius 2 deg and a potential coefficient set up to 180 deg. The traditional methods of Stokes' and Meissl's modification together with the Molodenskii method and the modified Sjoberg method were applied. Performing numerical tests based on global error assumptions regarding the terrestrial data and the geopotential set it was concluded that the modified Sjoberg method is the most accurate and promising technique for geoid undulation computations. The numerical computations for the geoid undulations using all the four methods resulted in agreement with the ellipsoidal minus orthometric value of the undulations on the order of 60 cm or better for most of the laser stations in the eastern United States, Australia, Japan, Bermuda, and Europe. A systematic discrepancy of about 2 meters for most of the western United States stations was detected and verified by using two relatively independent data sets. For oceanic laser stations in the western Atlantic and Pacific oceans that have no terrestrial data available, the adjusted GEOS-3 and SEASAT altimeter data were used for the computation of the geoid undulation in a collocation method.

Feasibility and electromagnetic analysis of a REBCO superconducting undulator

DOE PAGES

Kesgin, Ibrahim; Kasa, Matthew; Doose, Charles; ...

2016-03-17

Recent advances in second-generation (2G) high temperature superconducting (HTS) coated conductors (CCs) have made them very attractive for new applications such as undulators. In this study, we have, for the first time, experimentally evaluated a design to validate applicability of 2G-HTS tapes for next generation undulator magnetic structures. A two-period undulator magnetic core was fabricated and 2G-HTS CCs were successfully wound onto the undulator core. The performance of the undulator magnetic structure was investigated and the highest engineering current density, J e, in such configuration reported yet was obtained. A new U-slit tape configuration was used to reduce the numbermore » of resistive joints and it was shown that with this new technique affordable levels of resistance values can be achieved for short length undulators. The ferromagnetic core was designed such as to accommodate winding the U-slit tapes. Finally, test results indicated that the winding and the soldering procedures are successful and do not deteriorate the performance of the 2G-HTS tapes.« less

Undulator Radiation Damage Experience at LCLS

DOE Office of Scientific and Technical Information (OSTI.GOV)

Nuhn, H. D.; Field, C.; Mao, S.

2015-01-06

The SLAC National Accelerator Laboratory has been running the Linac Coherent Light Source (LCLS), the first x-ray Free Electron Laser since 2009. Undulator magnet damage from radiation, produced by the electron beam traveling through the 133-m long straight vacuum tube, has been and is a concern. A damage measurement experiment has been performed in 2007 in order to obtain dose versus damage calibrations. Radiation reduction and detection devices have been integrated into the LCLS undulator system. The accumulated radiation dose rate was continuously monitored and recorded. In addition, undulator segments have been routinely removed from the beamline to be checkedmore » for magnetic (50 ppm, rms) and mechanic (about 0.25 µm, rms) changes. A reduction in strength of the undulator segments is being observed, at a level, which is now clearly above the noise. Recently, potential sources for the observed integrated radiation levels have been investigated. The paper discusses the results of these investigation as well as comparison between observed damage and measured dose accumulations and discusses, briefly, strategies for the new LCLS-II upgrade, which will be operating at more than 300 times larger beam rate.« less

First observation of undulator radiation from APPLE-1

NASA Astrophysics Data System (ADS)

Sasaki, Shigemi; Shimada, Taihei; Yanagida, Ken-ichi; Kobayashi, Hideki; Miyahara, Yoshikazu

1994-08-01

Various polarized radiation was observed in the visible region generated by the new type undulator APPLE-1 (Advanced Planar Polarized Light Emitted - 1). The undulator was installed in the low energy electron storage ring JSR and we have succeeded in observing linearly polarized radiation in both planes and circularly polarized radiation with the aid of a Wollaston prism. During the process of shifting the arrays and changing the undulator gap, no noticeable change of radiation axis was observed.

Plasma channel undulator excited by high-order laser modes

DOE PAGES

Wang, J. W.; Schroeder, C. B.; Li, R.; ...

2017-12-04

The possibility of utilizing plasma undulators and plasma accelerators to produce compact ultraviolet and X-ray sources, has attracted considerable interest for a few decades. This interest has been driven by the great potential to decrease the threshold for accessing such sources, which are mainly provided by a few dedicated large-scale synchrotron or free-electron laser (FEL) facilities. However, the broad radiation bandwidth of such plasma devices limits the source brightness and makes it difficult for the FEL instability to develop. Here in this paper, using multi-dimensional particle-in-cell (PIC) simulations, we demonstrate that a plasma undulator generated by the beating of amore » mixture of high-order laser modes propagating inside a plasma channel, leads to a few percent radiation bandwidth. The strength of the undulator can reach unity, the period can be less than a millimeter, and the number of undulator periods can be significantly increased by a phase locking technique based on the longitudinal tapering. Polarization control of such an undulator can be achieved by appropriately choosing the phase of the modes. According to our results, in the fully beam loaded regime, the electron current in the plasma undulator can reach 0.3 kA level, making such an undulator a potential candidate towards a table-Top FEL.« less

Plasma channel undulator excited by high-order laser modes

DOE Office of Scientific and Technical Information (OSTI.GOV)

Wang, J. W.; Schroeder, C. B.; Li, R.

The possibility of utilizing plasma undulators and plasma accelerators to produce compact ultraviolet and X-ray sources, has attracted considerable interest for a few decades. This interest has been driven by the great potential to decrease the threshold for accessing such sources, which are mainly provided by a few dedicated large-scale synchrotron or free-electron laser (FEL) facilities. However, the broad radiation bandwidth of such plasma devices limits the source brightness and makes it difficult for the FEL instability to develop. Here in this paper, using multi-dimensional particle-in-cell (PIC) simulations, we demonstrate that a plasma undulator generated by the beating of amore » mixture of high-order laser modes propagating inside a plasma channel, leads to a few percent radiation bandwidth. The strength of the undulator can reach unity, the period can be less than a millimeter, and the number of undulator periods can be significantly increased by a phase locking technique based on the longitudinal tapering. Polarization control of such an undulator can be achieved by appropriately choosing the phase of the modes. According to our results, in the fully beam loaded regime, the electron current in the plasma undulator can reach 0.3 kA level, making such an undulator a potential candidate towards a table-Top FEL.« less

Isolated terawatt attosecond hard X-ray pulse generated from single current spike.

PubMed

Shim, Chi Hyun; Parc, Yong Woon; Kumar, Sandeep; Ko, In Soo; Kim, Dong Eon

2018-05-10

Isolated terawatt (TW) attosecond (as) hard X-ray pulse is greatly desired for four-dimensional investigations of natural phenomena with picometer spatial and attosecond temporal resolutions. Since the demand for such sources is continuously increasing, the possibility of generating such pulse by a single current spike without the use of optical or electron delay units in an undulator line is addressed. The conditions of a current spike (width and height) and a modulation laser pulse (wavelength and power) is also discussed. We demonstrate that an isolated TW-level as a hard X-ray can be produced by a properly chosen single current spike in an electron bunch with simulation results. By using realistic specifications of an electron bunch of the Pohang Accelerator Laboratory X-ray Free-Electron Laser (PAL-XFEL), we show that an isolated, >1.0 TW and ~36 as X-ray pulse at 12.4 keV can be generated in an optimized-tapered undulator line. This result opens a new vista for current XFEL operation: the attosecond XFEL.

Micropole undulator

DOEpatents

Tatchyn, Roman O.; Csonka, Paul L.; Cremer, Jay T.

1990-12-11

Micropole undulators for use in the generation of x-rays from moving charged particles are disclosed. Two rows of spaced apart poles are arranged so that each pole produces a magnetic field aligned with all other similar fields. The poles are the ends of "C"-shaped magnets. In each row, adjacent poles are separated by spacers made of a superconducting material.

Micropole undulator

DOEpatents

Tatchyn, R.O.; Csonka, P.L.; Cremer, J.T.

1990-12-11

Micropole undulators for use in the generation of x-rays from moving charged particles are disclosed. Two rows of spaced apart poles are arranged so that each pole produces a magnetic field aligned with all other similar fields. The poles are the ends of C''-shaped magnets. In each row, adjacent poles are separated by spacers made of a superconducting material. 11 figs.

UNDULATOR-BASED LASER WAKEFIELD ACCELERATOR ELECTRON BEAM DIAGNOSTIC

DOE Office of Scientific and Technical Information (OSTI.GOV)

Bakeman, M.S.; Fawley, W.M.; Leemans, W. P.

to couple the THUNDER undulator to the LOASIS Lawrence Berkeley National Laboratory (LBNL) laser wakefield accelerator (LWFA). Currently the LWFA has achieved quasi-monoenergetic electron beams with energies up to 1 GeV. These ultra-short, high-peak-current, electron beams are ideal for driving a compact XUV free electron laser (FEL). Understanding the electron beam properties such as the energy spread and emittance is critical for achieving high quality light sources with high brightness. By using an insertion device such as an undulator and observing changes in the spontaneous emission spectrum, the electron beam energy spread and emittance can be measured with high precision.more » The initial experiments will use spontaneous emission from 1.5 m of undulator. Later experiments will use up to 5 m of undulator with a goal of a high gain, XUV FEL.« less

Flying radio frequency undulator

DOE Office of Scientific and Technical Information (OSTI.GOV)

Kuzikov, S. V.; Vikharev, A. A.; Savilov, A. V.

2014-07-21

A concept for the room-temperature rf undulator, designed to produce coherent X-ray radiation by means of a relatively low-energy electron beam and pulsed mm-wavelength radiation, is proposed. The “flying” undulator is a high-power short rf pulse co-propagating together with a relativistic electron bunch in a helically corrugated waveguide. The electrons wiggle in the rf field of the −1st spatial harmonic with the phase velocity directed in the opposite direction in respect to the bunch velocity, so that particles can irradiate high-frequency Compton's photons. A high group velocity (close to the speed of light) ensures long cooperative motion of the particlesmore » and the co-propagating rf pulse.« less

DEVELOPMENT OF SHORT UNDULATORS FOR ELECTRON-BEAM-RADIATION INTERACTION STUDIES

DOE Office of Scientific and Technical Information (OSTI.GOV)

Piot, P.; Andorf, M. B.; Fagerberg, G.

Interaction of an electron beam with external field or its own radiation has widespread applications ranging from coherent-radiation generation, phase space cooling or formation of temporally-structured beams. An efficient coupling mechanism between an electron beam and radiation field relies on the use of a magnetic undulator. In this contribution we detail our plans to build short (11-period) undulators with 7-cm period refurbishing parts of the aladdin U3 undulator [1]. Possible use of these undulators at available test facilities to support experiments relevant to cooling techniques and radiation sources are outlined.

Fast pulsed excitation wiggler or undulator

DOEpatents

van Steenbergen, Arie

1990-01-01

A fast pulsed excitation, electromagnetic undulator or wiggler, employing geometrically alternating substacks of thin laminations of ferromagnetic material, together with a single turn current loop excitation of the composite assembly, of such shape and configuration that intense, spatially alternating, magnetic fields are generated; for use as a pulsed mode undulator or wiggler radiator, for use in a Free Electron Laser (FEL) type radiation source or, for use in an Inverse Free Electron Laser (IFEL) charged particle accelerator.

Helical undulator based on partial redistribution of uniform magnetic field

NASA Astrophysics Data System (ADS)

Balal, N.; Bandurkin, I. V.; Bratman, V. L.; Fedotov, A. E.

2017-12-01

A new type of helical undulator based on redistribution of magnetic field of a solenoid by ferromagnetic helix has been proposed and studied both in theory and experiment. Such undulators are very simple and efficient for promising sources of coherent spontaneous THz undulator radiation from dense electron bunches formed in laser-driven photo-injectors.

Cryogenic Permanent Magnet Undulators

DOE Office of Scientific and Technical Information (OSTI.GOV)

Chavanne, J.; Lebec, G.; Penel, C.

For an in-vacuum undulator operated at small gaps the permanent magnet material needs to be highly resistant to possible electron beam exposure. At room temperature, one generally uses Sm{sub 2}Co{sub 17} or high coercivity NdFeB magnets at the expense of a limited field performance. In a cryogenic permanent magnet undulator (CPMU), at a temperature of around 150 K, any NdFeB grade reveals a coercivity large enough to be radiation resistant. In particular, very high remanence NdFeB material can be used to build undulators with enhanced field and X-ray brilliance at high photon energy provided that the pre-baking of the undulatormore » above 100 deg. C can be eliminated. The ESRF has developed a full scale 2 m long CPMU with a period of 18 mm. This prototype has been in operation on the ID6 test beamline since January 2008. A significant effort was put into the characterization of NdFeB material at low temperature, the development of dedicated magnetic measurement systems and cooling methods. The measured heat budget with beam is found to be larger than expected without compromising the smooth operation of the device. Leading on from this first experience, new CPMUs are currently being considered for the upgrade of the ESRF.« less

Tunable polarization plasma channel undulator for narrow bandwidth photon emission

DOE PAGES

Rykovanov, S. G.; Wang, J. W.; Kharin, V. Yu.; ...

2016-09-09

The theory of a plasma undulator excited by a short intense laser pulse in a parabolic plasma channel is presented. The undulator fields are generated either by the laser pulse incident off-axis and/or under the angle with respect to the channel axis. Linear plasma theory is used to derive the wakefield structure. It is shown that the electrons injected into the plasma wakefields experience betatron motion and undulator oscillations. Optimal electron beam injection conditions are derived for minimizing the amplitude of the betatron motion, producing narrow-bandwidth undulator radiation. Polarization control is readily achieved by varying the laser pulse injection conditions.

The indirect effects on the computation of geoid undulations

NASA Technical Reports Server (NTRS)

Wichiencharoen, C.

1982-01-01

The indirect effects on the geoid computation due to the second method of Helmert's condensation were studied. when Helmert's anomalies are used in Stokes's equation, there are three types of corrections to the free air geoid. The first correction, the indirect effect on geoid undulation due to the potential change in Helmert's reduction, had a maximum value of 0.51 meters in the test area covering the United States. The second correction, the attraction change effect on geoid undulation, had a maximum value of 9.50 meters when the 10 deg cap was used in Stokes' equation. The last correction, the secondary indirect effect on geoid undulatin, was found negligible in the test area. The corrections were applied to uncorrected free air geoid undulations at 65 Doppler stations in the test area and compared with the Doppler undulations. Based on the assumption that the Doppler coordinate system has a z shift of 4 meters with respect to the geocenter, these comparisons showed that the corrections presented in this study yielded improved values of gravimetric undulations.

Polarization characteristics of radiation in both 'light' and conventional undulators

NASA Astrophysics Data System (ADS)

Potylitsyn, A. P.; Kolchuzhkin, A. M.; Strokov, S. A.

2017-07-01

As a rule, an intensity spectrum of undulator radiation (UR) is calculated by using the classical approach, even for electron energy higher than 10 GeV. Such a spectrum is determined by an electron trajectory in an undulator while neglecting radiation loss. Using Planck's law, the UR photon spectrum can be calculated from the obtained intensity spectrum, for both linear and nonlinear regimes. The electron radiation process in a field of strong electromagnetic waves is considered within the quantum electrodynamics framework, using the Compton scattering process or radiation in a 'light' undulator. A comparison was made of the results from using these two approaches, for UR spectra generated by 250-GeV electrons in an undulator with a 11.5-mm period; this comparison shows that they coincide with high accuracy. The characteristics of the collimated UR beam (i.e. spectrum and circular polarization) were simulated while taking into account the discrete process of photon emission along an electron trajectory in both undulator types. Both spectral photon distributions and polarization dependence on photon energy are 'smoothed', in comparison to that expected for a long undulator-the latter of which considers the ILC positron source (ILC Technical Design Report).

Investigation of the polarization state of dual APPLE-II undulators.

PubMed

Hand, Matthew; Wang, Hongchang; Dhesi, Sarnjeet S; Sawhney, Kawal

2016-01-01

The use of an APPLE II undulator is extremely important for providing a high-brilliance X-ray beam with the capability to switch between various photon beam polarization states. A high-precision soft X-ray polarimeter has been used to systematically investigate the polarization characteristics of the two helical APPLE II undulators installed on beamline I06 at Diamond Light Source. A simple data acquisition and processing procedure has been developed to determine the Stokes polarization parameters for light polarized at arbitrary linear angles emitted from a single undulator, and for circularly polarized light emitted from both undulators in conjunction with a single-period undulator phasing unit. The purity of linear polarization is found to deteriorate as the polarization angle moves away from the horizontal and vertical modes. Importantly, a negative correlation between the degree of circular polarization and the photon flux has been found when the phasing unit is used.

Perspectives on micropole undulators in synchrotron radiation technology

NASA Astrophysics Data System (ADS)

Tatchyn, Roman; Csonka, Paul; Toor, Arthur

1989-07-01

Micropole undulators promise to advance synchrotron radiation (SR) technology in two distinct ways. The first is in the development of economical, low-energy storage rings, or linacs, as soft x-ray sources, and the second is in the opening up of gamma-ray spectral ranges on high-energy storage rings. In this paper the promise and current status of micropole undulator (MPU) technology are discussed, and a review of some practical obstacles to the implementation of MPU's on present-day storage rings is given. Some successful results of recent performance measurements of micropole undulators on the Lawrence Livermore National Laboratory linac are briefly summarized.

Undulator radiation from laser-plasma-accelerated electron beams

NASA Astrophysics Data System (ADS)

Shaw, B.; van Tilborg, J.; Gonsalves, A.; Nakamura, K.; Sokollik, T.; Shiraishi, S.; Mittal, R.; Esarey, E.; Schroeder, C.; Toth, C.; Leemans, W. P.

2012-12-01

Recent experiments coupled electron beams from the LOASIS TREX laser plasma accelerator (LPA) [1, 2, 3] to the Tapered Hybrid Undulator (THUNDER). Using the 1.5m, 66 period undulator, followed by an XUV spectrometer, spontaneous radiation was observed at photon energies extending to 100 eV. Previous experiments have reported visible [4] and soft-x-ray [5] radiation. The purpose of our experiments is to do highly precise, single shot diagnostics of the energy spread and emittance for each electron beam. We present recent results including measurements of electron beam transport through the undulator with and without the use of permanent magnetic quadrapoles, and measurements of XUV spectra up to 100 eV from LPA produced e-beams.

Variable-Period Undulators For Synchrotron Radiation

DOEpatents

Shenoy, Gopal; Lewellen, John; Shu, Deming; Vinokurov, Nikolai

2005-02-22

A new and improved undulator design is provided that enables a variable period length for the production of synchrotron radiation from both medium-energy and high-energy storage rings. The variable period length is achieved using a staggered array of pole pieces made up of high permeability material, permanent magnet material, or an electromagnetic structure. The pole pieces are separated by a variable width space. The sum of the variable width space and the pole width would therefore define the period of the undulator. Features and advantages of the invention include broad photon energy tunability, constant power operation and constant brilliance operation.

Strong permanent magnet-assisted electromagnetic undulator

DOEpatents

Halbach, Klaus

1988-01-01

This invention discloses an improved undulator comprising a plurality of electromagnet poles located along opposite sides of a particle beam axis with alternate north and south poles on each side of the beam to cause the beam to wiggle or undulate as it travels generally along the beam axis and permanent magnets spaced adjacent the electromagnetic poles on each side of the axis of said particle beam in an orientation sufficient to reduce the saturation of the electromagnet poles whereby the field strength of the electromagnet poles can be increased beyond the normal saturation levels of the electromagnetic poles.

Magnet system optimization for segmented adaptive-gap in-vacuum undulator

DOE Office of Scientific and Technical Information (OSTI.GOV)

Kitegi, C., E-mail: ckitegi@bnl.gov; Chubar, O.; Eng, C.

2016-07-27

Segmented Adaptive Gap in-vacuum Undulator (SAGU), in which different segments have different gaps and periods, promises a considerable spectral performance gain over a conventional undulator with uniform gap and period. According to calculations, this gain can be comparable to the gain achievable with a superior undulator technology (e.g. a room-temperature in-vacuum hybrid SAGU would perform as a cryo-cooled hybrid in-vacuum undulator with uniform gap and period). However, for reaching the high spectral performance, SAGU magnetic design has to include compensation of kicks experienced by the electron beam at segment junctions because of different deflection parameter values in the segments. Wemore » show that such compensation to large extent can be accomplished by using a passive correction, however, simple correction coils are nevertheless required as well to reach perfect compensation over a whole SAGU tuning range. Magnetic optimizations performed with Radia code, and the resulting undulator radiation spectra calculated using SRW code, demonstrating a possibility of nearly perfect correction, are presented.« less

Radiation collimation in a thick crystalline undulator

NASA Astrophysics Data System (ADS)

Wistisen, Tobias Nyholm; Uggerhøj, Ulrik Ingerslev; Hansen, John Lundsgaard; Lauth, Werner; Klag, Pascal

2017-05-01

With the recent experimental confirmation of the existence of energetic radiation from a Small Amplitude, Small Period (SASP) crystalline undulator [T.N. Wistisen, K.K. Andersen, S. Yilmaz, R. Mikkelsen, J. Lundsgaard Hansen, U.I. Uggerhøj, W. Lauth, H. Backe, Phys. Rev. Lett. 112, 254801 (2014)], the field of specially manufactured crystals, from which specific radiation characteristics can be obtained, has evolved substantially. In this paper we confirm the existence of the crystalline undulator radiation, using electrons of energies of 855 GeV from the MAinzer MIcrotron (MAMI) in a crystal that is approximately 10 times thicker than the previous one. Furthermore, we have measured a significant increase in enhancement, in good agreement with calculations, of the undulator peak by collimation to angles smaller than the natural opening angle of the radiation emission process, 1 /γ. Contribution to the Topical Issue: "Dynamics of Systems at the Nanoscale", edited by Andrey Solov'yov and Andrei Korol.

Improved crystal orientation and physical properties from single-shot XFEL stills

DOE PAGES

Sauter, Nicholas K.; Hattne, Johan; Brewster, Aaron S.; ...

2014-11-28

X-ray diffraction patterns from still crystals are inherently difficult to process because the crystal orientation is not uniquely determined by measuring the Bragg spot positions. Only one of the three rotational degrees of freedom is directly coupled to spot positions; the other two rotations move Bragg spots in and out of the reflecting condition but do not change the direction of the diffracted rays. This hinders the ability to recover accurate structure factors from experiments that are dependent on single-shot exposures, such as femtosecond diffract-and-destroy protocols at X-ray free-electron lasers (XFELs). Here, additional methods are introduced to optimally model themore » diffraction. The best orientation is obtained by requiring, for the brightest observed spots, that each reciprocal-lattice point be placed into the exact reflecting condition implied by Bragg's law with a minimal rotation. This approach reduces the experimental uncertainties in noisy XFEL data, improving the crystallographic R factors and sharpening anomalous differences that are near the level of the noise.« less

Improved crystal orientation and physical properties from single-shot XFEL stills

DOE Office of Scientific and Technical Information (OSTI.GOV)

Sauter, Nicholas K.; Hattne, Johan; Brewster, Aaron S.

X-ray diffraction patterns from still crystals are inherently difficult to process because the crystal orientation is not uniquely determined by measuring the Bragg spot positions. Only one of the three rotational degrees of freedom is directly coupled to spot positions; the other two rotations move Bragg spots in and out of the reflecting condition but do not change the direction of the diffracted rays. This hinders the ability to recover accurate structure factors from experiments that are dependent on single-shot exposures, such as femtosecond diffract-and-destroy protocols at X-ray free-electron lasers (XFELs). Here, additional methods are introduced to optimally model themore » diffraction. The best orientation is obtained by requiring, for the brightest observed spots, that each reciprocal-lattice point be placed into the exact reflecting condition implied by Bragg's law with a minimal rotation. This approach reduces the experimental uncertainties in noisy XFEL data, improving the crystallographic R factors and sharpening anomalous differences that are near the level of the noise.« less

A fast analytical undulator model for realistic high-energy FEL simulations

NASA Astrophysics Data System (ADS)

Tatchyn, R.; Cremer, T.

1997-02-01

A number of leading FEL simulation codes used for modeling gain in the ultralong undulators required for SASE saturation in the <100 Å range employ simplified analytical models both for field and error representations. Although it is recognized that both the practical and theoretical validity of such codes could be enhanced by incorporating realistic undulator field calculations, the computational cost of doing this can be prohibitive, especially for point-to-point integration of the equations of motion through each undulator period. In this paper we describe a simple analytical model suitable for modeling realistic permanent magnet (PM), hybrid/PM, and non-PM undulator structures, and discuss selected techniques for minimizing computation time.

Earth's Magnetic Field Measurements for the LCLS Undulators

DOE Office of Scientific and Technical Information (OSTI.GOV)

Hacker, Kirsten

2010-12-13

Measurements of the earth's magnetic field at several locations at SLAC were conducted to determine the possible field error contribution from tuning the undulators in a location with a different magnetic field than that which will be found in the undulator hall. An average difference of 0.08 {+-} 0.04 Gauss has been measured between the downward earth's field components in the test facility and SLAC tunnel locations.

Merging single-shot XFEL diffraction data from inorganic nanoparticles: a new approach to size and orientation determination

DOE PAGES

Li, Xuanxuan; Spence, John C. H.; Hogue, Brenda G.; ...

2017-09-22

X-ray free-electron lasers (XFELs) provide new opportunities for structure determination of biomolecules, viruses and nanomaterials. With unprecedented peak brilliance and ultra-short pulse duration, XFELs can tolerate higher X-ray doses by exploiting the femtosecond-scale exposure time, and can thus go beyond the resolution limits achieved with conventional X-ray diffraction imaging techniques. Using XFELs, it is possible to collect scattering information from single particles at high resolution, however particle heterogeneity and unknown orientations complicate data merging in three-dimensional space. Using the Linac Coherent Light Source (LCLS), synthetic inorganic nanocrystals with a core–shell architecture were used as a model system for proof-of-principle coherentmore » diffractive single-particle imaging experiments. To deal with the heterogeneity of the core–shell particles, new computational methods have been developed to extract the particle size and orientation from the scattering data to assist data merging. The size distribution agrees with that obtained by electron microscopy and the merged data support a model with a core–shell architecture.« less

Merging single-shot XFEL diffraction data from inorganic nanoparticles: a new approach to size and orientation determination

DOE Office of Scientific and Technical Information (OSTI.GOV)

Li, Xuanxuan; Spence, John C. H.; Hogue, Brenda G.

X-ray free-electron lasers (XFELs) provide new opportunities for structure determination of biomolecules, viruses and nanomaterials. With unprecedented peak brilliance and ultra-short pulse duration, XFELs can tolerate higher X-ray doses by exploiting the femtosecond-scale exposure time, and can thus go beyond the resolution limits achieved with conventional X-ray diffraction imaging techniques. Using XFELs, it is possible to collect scattering information from single particles at high resolution, however particle heterogeneity and unknown orientations complicate data merging in three-dimensional space. Using the Linac Coherent Light Source (LCLS), synthetic inorganic nanocrystals with a core–shell architecture were used as a model system for proof-of-principle coherentmore » diffractive single-particle imaging experiments. To deal with the heterogeneity of the core–shell particles, new computational methods have been developed to extract the particle size and orientation from the scattering data to assist data merging. The size distribution agrees with that obtained by electron microscopy and the merged data support a model with a core–shell architecture.« less

High Efficiency Electron-Laser Interactions in Tapered Helical Undulators

NASA Astrophysics Data System (ADS)

Duris, Joseph Patrick

Efficient coupling of relativistic electron beams with high power radiation lies at the heart of advanced accelerator and light source research and development. The inverse free electron laser is a stable accelerator capable of harnessing very high intensity laser electric fields to efficiently transfer large powers from lasers to electron beams. In this dissertation, we first present the theoretical framework to describe the interaction, and then apply our improved understanding of the IFEL to the design and numerical study of meter-long, GeV IFELs for compact light sources. The central experimental work of the dissertation is the UCLA BNL helical inverse free electron laser experiment at the Accelerator Test Facility in Brookhaven National Laboratory which used a strongly tapered 54cm long, helical, permanent magnet undulator and a several hundred GW CO2 laser to accelerate electrons from 52 to 106MeV, setting new records for inverse free electron laser energy gain (54MeV) and average accelerating gradient (100MeV/m). The undulator design and fabrication as well as experimental diagnostics are presented. In order to improve the stability and quality of the accelerated electron beam, we redesigned the undulator for a slightly reduced output energy by modifying the magnet gap throughout the undulator, and we used this modified undulator to demonstrated capture of >25% of the injected beam without prebunching. In the study of heavily loaded GeV inverse free electron lasers, we show that a majority of the power may be transferred from a laser to the accelerated electron beam. Reversing the process to decelerate high power electron beams, a mechanism we refer to as tapering enhanced stimulated superradiant amplification, offers a clear path to high power light sources. We present studies of radiation production for a wide range of wavelengths (10mum, 13nm, and 0.3nm) using this method and discuss the design for a deceleration experiment using the same undulator used

Simulations of X-ray diffraction of shock-compressed single-crystal tantalum with synchrotron undulator sources.

PubMed

Tang, M X; Zhang, Y Y; E, J C; Luo, S N

2018-05-01

Polychromatic synchrotron undulator X-ray sources are useful for ultrafast single-crystal diffraction under shock compression. Here, simulations of X-ray diffraction of shock-compressed single-crystal tantalum with realistic undulator sources are reported, based on large-scale molecular dynamics simulations. Purely elastic deformation, elastic-plastic two-wave structure, and severe plastic deformation under different impact velocities are explored, as well as an edge release case. Transmission-mode diffraction simulations consider crystallographic orientation, loading direction, incident beam direction, X-ray spectrum bandwidth and realistic detector size. Diffraction patterns and reciprocal space nodes are obtained from atomic configurations for different loading (elastic and plastic) and detection conditions, and interpretation of the diffraction patterns is discussed.

A strong permanent magnet-assisted electromagnetic undulator

DOEpatents

Halbach, K.

1987-01-30

This invention discloses an improved undulator comprising a plurality of electromagnet poles located along opposite sides of a particle beam axis with alternate north and south poles on each side of the beam to cause the beam to wiggle or undulate as it travels generally along the beam axis and permanent magnets spaced adjacent the electromagnetic poles on each side of the axis of said particle beam in an orientation sufficient to reduce the saturation of the electromagnet poles whereby the field strength of the electromagnet poles can be increased beyond the normal saturation levels of the electromagnetic poles. 4 figs.

Compact Undulator for the Cornell High Energy Synchrotron Source: Design and Beam Test Results

NASA Astrophysics Data System (ADS)

Temnykh, A.; Dale, D.; Fontes, E.; Li, Y.; Lyndaker, A.; Revesz, P.; Rice, D.; Woll, A.

2013-03-01

We developed, built and beam tested a novel, compact, in-vacuum undulator magnet based on an adjustable phase (AP) scheme. The undulator is 1 m long with a 5mm gap. It has a pure permanent magnet structure with 24.4mm period and 1.1 Tesla maximum peak field. The device consists of two planar magnet arrays mounted on rails inside of a rectangular box-like frame with 156 mm × 146 mm dimensions. The undulator magnet is enclosed in a 273 mm (10.75") diameter cylindrical vacuum vessel with a driver mechanism placed outside. In May 2012 the CHESS Compact Undulator (CCU) was installed in Cornell Electron Storage Ring and beam tested. During four weeks of dedicated run we evaluated undulator radiation properties as well as magnetic, mechanical and vacuum properties of the undulator magnet. We also studied the effect of the CCU on storage ring beam. The spectral characteristics and intensity of radiation were found to be in very good agreement with expected. The magnet demonstrated reproducibility of undulator parameter K at 1.4 × 10-4 level. It was also found that the undulator K. parameter change does not affect electron beam orbit and betatron tunes.

Femtosecond synchronism of x-rays and visible/infrared light in an x-ray free-electron laser

DOE Office of Scientific and Technical Information (OSTI.GOV)

Adams, B. W.

2007-12-15

A way is proposed to obtain ultrashort pulses of intense infrared/visible light in few-femtosecond synchronism with x-rays from an x-ray free-electron laser (XFEL). It makes use of the recently proposed emittance-slicing technique [Emma et al., Phys. Rev. Lett. 92, 074801 (2004)] to both restrict the duration of self-amplified spontaneous emission (SASE) to a few femtoseconds and to lead to a coherence enhancement of near-infrared transition undulator radiation (CTUR). The x-rays and the near-infrared light originate within the XFEL undulator from the same slice of electrons within a bunch and are therefore perfectly synchronized with each other. An example of realizingmore » the scheme at the Linac Coherent Light Source is presented. A few side issues are explored briefly, such as the magnitude of the velocity term versus the acceleration term in the Lienard-Wiechert fields and the possible use of the CTUR as a diagnostic tool for the SASE process itself.« less

An Undulator-Based Laser Wakefield Accelerator Electron Beam Diagnostic

NASA Astrophysics Data System (ADS)

Bakeman, Michael S.

Currently particle accelerators such as the Large Hadron Collider use RF cavities with a maximum field gradient of 50-100 MV/m to accelerate particles over long distances. A new type of plasma based accelerator called a Laser Plasma Accelerator (LPA) is being investigated at the LOASIS group at Lawrence Berkeley National Laboratory which can sustain field gradients of 10-100 GV/m. This new type of accelerator offers the potential to create compact high energy accelerators and light sources. In order to investigate the feasibility of producing a compact light source an undulator-based electron beam diagnostic for use on the LOASIS LPA has been built and calibrated. This diagnostic relies on the principal that the spectral analysis of synchrotron radiation from an undulator can reveal properties of the electron beam such as emittance, energy and energy spread. The effects of electron beam energy spread upon the harmonics of undulator produced synchrotron radiation were derived from the equations of motion of the beam and numerically simulated. The diagnostic consists of quadrupole focusing magnets to collimate the electron beam, a 1.5 m long undulator to produce the synchrotron radiation, and a high resolution high gain XUV spectrometer to analyze the radiation. The undulator was aligned and tuned in order to maximize the flux of synchrotron radiation produced. The spectrometer was calibrated at the Advanced Light Source, with the results showing the ability to measure electron beam energy spreads at resolutions as low as 0.1% rms, a major improvement over conventional magnetic spectrometers. Numerical simulations show the ability to measure energy spreads on realistic LPA produced electron beams as well as the improvements in measurements made with the quadrupole magnets. Experimentally the quadrupoles were shown to stabilize and focus the electron beams at specific energies for their insertion into the undulator, with the eventual hope of producing an all optical

On the single-photon-counting (SPC) modes of imaging using an XFEL source

DOE Office of Scientific and Technical Information (OSTI.GOV)

Wang, Zhehui

In this study, the requirements to achieve high detection efficiency (above 50%) and gigahertz (GHz) frame rate for the proposed 42-keV X-ray free-electron laser (XFEL) at Los Alamos are summarized. Direct detection scenarios using C (diamond), Si, Ge and GaAs semiconductor sensors are analyzed. Single-photon counting (SPC) mode and weak SPC mode using Si can potentially meet the efficiency and frame rate requirements and be useful to both photoelectric absorption and Compton physics as the photon energy increases. Multilayer three-dimensional (3D) detector architecture, as a possible means to realize SPC modes, is compared with the widely used two-dimensional (2D) hybridmore » planar electrode structure and 3D deeply entrenched electrode architecture. Demonstration of thin film cameras less than 100-μm thick with onboard thin ASICs could be an initial step to realize multilayer 3D detectors and SPC modes for XFELs.« less

On the single-photon-counting (SPC) modes of imaging using an XFEL source

DOE PAGES

Wang, Zhehui

2015-12-14

In this study, the requirements to achieve high detection efficiency (above 50%) and gigahertz (GHz) frame rate for the proposed 42-keV X-ray free-electron laser (XFEL) at Los Alamos are summarized. Direct detection scenarios using C (diamond), Si, Ge and GaAs semiconductor sensors are analyzed. Single-photon counting (SPC) mode and weak SPC mode using Si can potentially meet the efficiency and frame rate requirements and be useful to both photoelectric absorption and Compton physics as the photon energy increases. Multilayer three-dimensional (3D) detector architecture, as a possible means to realize SPC modes, is compared with the widely used two-dimensional (2D) hybridmore » planar electrode structure and 3D deeply entrenched electrode architecture. Demonstration of thin film cameras less than 100-μm thick with onboard thin ASICs could be an initial step to realize multilayer 3D detectors and SPC modes for XFELs.« less

Simulations of X-ray diffraction of shock-compressed single-crystal tantalum with synchrotron undulator sources

DOE Office of Scientific and Technical Information (OSTI.GOV)

Tang, M. X.; Zhang, Y. Y.; E, J. C.

Polychromatic synchrotron undulator X-ray sources are useful for ultrafast single-crystal diffraction under shock compression. Here, simulations of X-ray diffraction of shock-compressed single-crystal tantalum with realistic undulator sources are reported, based on large-scale molecular dynamics simulations. Purely elastic deformation, elastic–plastic two-wave structure, and severe plastic deformation under different impact velocities are explored, as well as an edge release case. Transmission-mode diffraction simulations consider crystallographic orientation, loading direction, incident beam direction, X-ray spectrum bandwidth and realistic detector size. Diffraction patterns and reciprocal space nodes are obtained from atomic configurations for different loading (elastic and plastic) and detection conditions, and interpretation of themore » diffraction patterns is discussed.« less

Mapping the conformational landscape of a dynamic enzyme by multitemperature and XFEL crystallography

PubMed Central

Keedy, Daniel A; Kenner, Lillian R; Warkentin, Matthew; Woldeyes, Rahel A; Hopkins, Jesse B; Thompson, Michael C; Brewster, Aaron S; Van Benschoten, Andrew H; Baxter, Elizabeth L; Uervirojnangkoorn, Monarin; McPhillips, Scott E; Song, Jinhu; Alonso-Mori, Roberto; Holton, James M; Weis, William I; Brunger, Axel T; Soltis, S Michael; Lemke, Henrik; Gonzalez, Ana; Sauter, Nicholas K; Cohen, Aina E; van den Bedem, Henry; Thorne, Robert E; Fraser, James S

2015-01-01

Determining the interconverting conformations of dynamic proteins in atomic detail is a major challenge for structural biology. Conformational heterogeneity in the active site of the dynamic enzyme cyclophilin A (CypA) has been previously linked to its catalytic function, but the extent to which the different conformations of these residues are correlated is unclear. Here we compare the conformational ensembles of CypA by multitemperature synchrotron crystallography and fixed-target X-ray free-electron laser (XFEL) crystallography. The diffraction-before-destruction nature of XFEL experiments provides a radiation-damage-free view of the functionally important alternative conformations of CypA, confirming earlier synchrotron-based results. We monitored the temperature dependences of these alternative conformations with eight synchrotron datasets spanning 100-310 K. Multiconformer models show that many alternative conformations in CypA are populated only at 240 K and above, yet others remain populated or become populated at 180 K and below. These results point to a complex evolution of conformational heterogeneity between 180-–240 K that involves both thermal deactivation and solvent-driven arrest of protein motions in the crystal. The lack of a single shared conformational response to temperature within the dynamic active-site network provides evidence for a conformation shuffling model, in which exchange between rotamer states of a large aromatic ring in the middle of the network shifts the conformational ensemble for the other residues in the network. Together, our multitemperature analyses and XFEL data motivate a new generation of temperature- and time-resolved experiments to structurally characterize the dynamic underpinnings of protein function. DOI: http://dx.doi.org/10.7554/eLife.07574.001 PMID:26422513

Mapping the conformational landscape of a dynamic enzyme by multitemperature and XFEL crystallography

DOE PAGES

Keedy, Daniel A.; Kenner, Lillian R.; Warkentin, Matthew; ...

2015-09-30

Determining the interconverting conformations of dynamic proteins in atomic detail is a major challenge for structural biology. Conformational heterogeneity in the active site of the dynamic enzyme cyclophilin A (CypA) has been previously linked to its catalytic function, but the extent to which the different conformations of these residues are correlated is unclear. Here we compare the conformational ensembles of CypA by multitemperature synchrotron crystallography and fixed-target X-ray free-electron laser (XFEL) crystallography. The diffraction-before-destruction nature of XFEL experiments provides a radiation-damage-free view of the functionally important alternative conformations of CypA, confirming earlier synchrotron-based results. We monitored the temperature dependences ofmore » these alternative conformations with eight synchrotron datasets spanning 100-310 K. Multiconformer models show that many alternative conformations in CypA are populated only at 240 K and above, yet others remain populated or become populated at 180 K and below. These results point to a complex evolution of conformational heterogeneity between 180-–240 K that involves both thermal deactivation and solvent-driven arrest of protein motions in the crystal. The lack of a single shared conformational response to temperature within the dynamic active-site network provides evidence for a conformation shuffling model, in which exchange between rotamer states of a large aromatic ring in the middle of the network shifts the conformational ensemble for the other residues in the network. Altogether, our multitemperature analyses and XFEL data motivate a new generation of temperature- and time-resolved experiments to structurally characterize the dynamic underpinnings of protein function.« less

Mapping the conformational landscape of a dynamic enzyme by multitemperature and XFEL crystallography

DOE Office of Scientific and Technical Information (OSTI.GOV)

Keedy, Daniel A.; Kenner, Lillian R.; Warkentin, Matthew

Determining the interconverting conformations of dynamic proteins in atomic detail is a major challenge for structural biology. Conformational heterogeneity in the active site of the dynamic enzyme cyclophilin A (CypA) has been previously linked to its catalytic function, but the extent to which the different conformations of these residues are correlated is unclear. Here we compare the conformational ensembles of CypA by multitemperature synchrotron crystallography and fixed-target X-ray free-electron laser (XFEL) crystallography. The diffraction-before-destruction nature of XFEL experiments provides a radiation-damage-free view of the functionally important alternative conformations of CypA, confirming earlier synchrotron-based results. We monitored the temperature dependences ofmore » these alternative conformations with eight synchrotron datasets spanning 100-310 K. Multiconformer models show that many alternative conformations in CypA are populated only at 240 K and above, yet others remain populated or become populated at 180 K and below. These results point to a complex evolution of conformational heterogeneity between 180-–240 K that involves both thermal deactivation and solvent-driven arrest of protein motions in the crystal. The lack of a single shared conformational response to temperature within the dynamic active-site network provides evidence for a conformation shuffling model, in which exchange between rotamer states of a large aromatic ring in the middle of the network shifts the conformational ensemble for the other residues in the network. Together, our multitemperature analyses and XFEL data motivate a new generation of temperature- and time-resolved experiments to structurally characterize the dynamic underpinnings of protein function.« less

Mapping the conformational landscape of a dynamic enzyme by multitemperature and XFEL crystallography

DOE Office of Scientific and Technical Information (OSTI.GOV)

Keedy, Daniel A.; Kenner, Lillian R.; Warkentin, Matthew

Determining the interconverting conformations of dynamic proteins in atomic detail is a major challenge for structural biology. Conformational heterogeneity in the active site of the dynamic enzyme cyclophilin A (CypA) has been previously linked to its catalytic function, but the extent to which the different conformations of these residues are correlated is unclear. Here we compare the conformational ensembles of CypA by multitemperature synchrotron crystallography and fixed-target X-ray free-electron laser (XFEL) crystallography. The diffraction-before-destruction nature of XFEL experiments provides a radiation-damage-free view of the functionally important alternative conformations of CypA, confirming earlier synchrotron-based results. We monitored the temperature dependences ofmore » these alternative conformations with eight synchrotron datasets spanning 100-310 K. Multiconformer models show that many alternative conformations in CypA are populated only at 240 K and above, yet others remain populated or become populated at 180 K and below. These results point to a complex evolution of conformational heterogeneity between 180-–240 K that involves both thermal deactivation and solvent-driven arrest of protein motions in the crystal. The lack of a single shared conformational response to temperature within the dynamic active-site network provides evidence for a conformation shuffling model, in which exchange between rotamer states of a large aromatic ring in the middle of the network shifts the conformational ensemble for the other residues in the network. Altogether, our multitemperature analyses and XFEL data motivate a new generation of temperature- and time-resolved experiments to structurally characterize the dynamic underpinnings of protein function.« less

XFEL resonant photo-pumping of dense plasmas and dynamic evolution of autoionizing core hole states

NASA Astrophysics Data System (ADS)

Rosmej, F. B.; Moinard, A.; Renner, O.; Galtier, E.; Lee, J. J.; Nagler, B.; Heimann, P. A.; Schlotter, W.; Turner, J. J.; Lee, R. W.; Makita, M.; Riley, D.; Seely, J.

2016-03-01

Similarly to the case of LIF (Laser-Induced Fluorescence), an equally revolutionary impact to science is expected from resonant X-ray photo-pumping. It will particularly contribute to a progress in high energy density science: pumped core hole states create X-ray transitions that can escape dense matter on a 10 fs-time scale without essential photoabsorption, thus providing a unique possibility to study matter under extreme conditions. In the first proof of principle experiment at the X-ray Free Electron Laser LCLS at SCLAC [Seely, J., Rosmej, F.B., Shepherd, R., Riley, D., Lee, R.W. Proposal to Perform the 1st High Energy Density Plasma Spectroscopic Pump/Probe Experiment”, approved LCLS proposal L332 (2010)] we have successfully pumped inner-shell X-ray transitions in dense plasmas. The plasma was generated with a YAG laser irradiating solid Al and Mg targets attached to a rotating cylinder. In parallel to the optical laser beam, the XFEL was focused into the plasma plume at different delay times and pump energies. Pumped X-ray transitions have been observed with a spherically bent crystal spectrometer coupled to a Princeton CCD. By using this experimental configuration, we have simultaneously achieved extremely high spectral (λ/δλ ≈ 5000) and spatial resolution (δx≈70 μm) while maintaining high luminosity and a large spectral range covered (6.90 - 8.35 Å). By precisely measuring the variations in spectra emitted from plasma under action of XFEL radiation, we have successfully demonstrated transient X- ray pumping in a dense plasma.

The Advanced Light Source (ALS) Slicing Undulator Beamline

DOE Office of Scientific and Technical Information (OSTI.GOV)

Heimann, P. A.; Glover, T. E.; Plate, D.

2007-01-19

A beamline optimized for the bunch slicing technique has been construction at the Advanced Light Source (ALS). This beamline includes an in-vacuum undulator, soft and hard x-ray beamlines and a femtosecond laser system. The soft x-ray beamline may operate in spectrometer mode, where an entire absorption spectrum is accumulated at one time, or in monochromator mode. The femtosecond laser system has a high repetition rate of 20 kHz to improve the average slicing flux. The performance of the soft x-ray branch of the ALS slicing undulator beamline will be presented.

Characterization of undulator radiation at the photon factory

NASA Astrophysics Data System (ADS)

Maezawa, Hideki; Suzuki, Yoshio; Kitamura, Hideo; Sasaki, Taizo

1986-05-01

Spectra of undulator radiation of the Photon Factory undulator, model PMU-2, were measured in a scale of absolute brightness in the soft X-ray region for various values of the K-parameter from 0.72 to 1.66. A significant reduction of the peak brightness was observed, whereas we also observed a relatively sharp edge at the high energy side of the first harmonic. The results show that the peak brightness and the band width are highly dependent on the beam parameters and the geometry of spectral observation.

Drop-on-Demand Sample Delivery for Studying Biocatalysts in Action at XFELs

PubMed Central

Fuller, Franklin D.; Gul, Sheraz; Chatterjee, Ruchira; Burgie, Ernest S.; Young, Iris D.; Lebrette, Hugo; Srinivas, Vivek; Brewster, Aaron S.; Michels-Clark, Tara; Clinger, Jonathan A.; Andi, Babak; Ibrahim, Mohamed; Pastor, Ernest; de Lichtenberg, Casper; Hussein, Rana; Pollock, Christopher J.; Zhang, Miao; Stan, Claudiu A.; Kroll, Thomas; Fransson, Thomas; Weninger, Clemens; Kubin, Markus; Aller, Pierre; Lassalle, Louise; Bräuer, Philipp; Miller, Mitchell D.; Amin, Muhamed; Koroidov, Sergey; Roessler, Christian G.; Allaire, Marc; Sierra, Raymond G.; Docker, Peter T.; Glownia, James M.; Nelson, Silke; Koglin, Jason E.; Zhu, Diling; Chollet, Matthieu; Song, Sanghoon; Lemke, Henrik; Liang, Mengning; Sokaras, Dimosthenis; Alonso-Mori, Roberto; Zouni, Athina; Messinger, Johannes; Bergmann, Uwe; Boal, Amie K.; Bollinger, J. Martin; Krebs, Carsten; Högbom, Martin; Phillips, George N.; Vierstra, Richard D.; Sauter, Nicholas K.; Orville, Allen M.; Kern, Jan; Yachandra, Vittal K.; Yano, Junko

2017-01-01

X-ray crystallography at X-ray free-electron laser (XFEL) sources is a powerful method for studying macromolecules at biologically relevant temperatures. Moreover, when combined with complementary techniques like X-ray emission spectroscopy (XES), both global structures and chemical properties of metalloenzymes can be obtained concurrently, providing new insights into the interplay between the protein structure/dynamics and chemistry at an active site. Implementing such a multimodal approach can be compromised by conflicting requirements to optimize each individual method. In particular, the method used for sample delivery greatly impacts the data quality. We present here a new, robust way of delivering controlled sample amounts on demand using acoustic droplet ejection coupled with a conveyor belt drive that is optimized for crystallography and spectroscopy measurements of photochemical and chemical reactions over a wide range of time scales. Studies with photosystem II, the phytochrome photoreceptor, and ribonucleotide reductase R2 illustrate the power and versatility of this method. PMID:28250468

X-ray two-photon absorption with high fluence XFEL pulses

DOE PAGES

Hoszowska, Joanna; Szlachetko, J.; Dousse, J. -Cl.; ...

2015-09-07

Here, we report on nonlinear interaction of solid Fe with intense femtosecond hard x-ray free-electron laser (XFEL) pulses. The experiment was performed at the CXI end-station of the Linac Coherent Light Source (LCLS) by means of high- resolution x-ray emission spectroscopy. The focused x-ray beam provided extreme fluence of ~10 5 photons/Å 2. Two-photon absorption leading to K-shell hollow atom formation and to single K-shell ionization of solid Fe was investigated.

Undulator performance on PEP storage ring with different optics

DOE Office of Scientific and Technical Information (OSTI.GOV)

Shenoy, G.K.; Viccaro, P.J.; Alp, E.E.

1987-12-01

Our ability to profitably utilize the radiation from undulators proposed for PEP is determined by their performance in the different operating modes and by whether the design tolerance required for acceptable operation of the device can be met with available technology. The purpose of this paper is to provide spectral characteristics for some typical devices calculated using a Monte-Carlo algorithm in which the Lienard-Wiechert potential is integrated over the trajectory of the charged particle along the undulator length. The actual emittance of the particle beam for the various PEP operating modes are included explicitly in the simulations. In addition, wemore » have carried out a single partial analysis of the effects of undulator magnetic field errors on the spectral properties in order to estimate the design tolerance requirements necessary for devices which have been proposed PEP. 6 figs.« less

Improved crystal orientation and physical properties from single-shot XFEL stills

DOE Office of Scientific and Technical Information (OSTI.GOV)

Sauter, Nicholas K., E-mail: nksauter@lbl.gov; Hattne, Johan; Brewster, Aaron S.

X-ray free-electron laser crystallography relies on the collection of still-shot diffraction patterns. New methods are developed for optimal modeling of the crystals’ orientations and mosaic block properties. X-ray diffraction patterns from still crystals are inherently difficult to process because the crystal orientation is not uniquely determined by measuring the Bragg spot positions. Only one of the three rotational degrees of freedom is directly coupled to spot positions; the other two rotations move Bragg spots in and out of the reflecting condition but do not change the direction of the diffracted rays. This hinders the ability to recover accurate structure factorsmore » from experiments that are dependent on single-shot exposures, such as femtosecond diffract-and-destroy protocols at X-ray free-electron lasers (XFELs). Here, additional methods are introduced to optimally model the diffraction. The best orientation is obtained by requiring, for the brightest observed spots, that each reciprocal-lattice point be placed into the exact reflecting condition implied by Bragg’s law with a minimal rotation. This approach reduces the experimental uncertainties in noisy XFEL data, improving the crystallographic R factors and sharpening anomalous differences that are near the level of the noise.« less

Construction of CHESS compact undulator magnets at Kyma

NASA Astrophysics Data System (ADS)

Temnykh, Alexander B.; Lyndaker, Aaron; Kokole, Mirko; Milharcic, Tadej; Pockar, Jure; Geometrante, Raffaella

2015-05-01

In 2014 KYMA S.r.l. has built two CHESS Compact Undulator (CCU) magnets that are at present installed and successfully operate at the Cornell Electron Storage Ring. This type of undulator was developed for upgrade of Cornell High Energy Synchrotron Source beam-lines, but it can be used elsewhere as well. CCU magnets are compact, lightweight, cost efficient and in-vacuum compatible. They are linearly polarized undulators and have a fixed gap. Magnetic field tuning is achieved by phasing (shifting) top magnetic array relative bottom. Two CCUs constructed by KYMA S.r.l. have 28.4 mm period, 6.5 mm gap, 0.93 T peak field. Magnetic structure is of PPM type, made with NdFeB (40UH grade) permanent magnet material. Transitioning from the laboratory to industrial environment for a novel design required additional evaluation, design adjusting and extensive testing. Particular attention was given to the soldering technique used for fastening of the magnetic blocks to holders. This technique had thus far never been used before for undulator magnet construction by industry. The evaluation included tests of different types of soldering paste, measurements of strength of solder and determining the deformations of the soldered magnet and holder under simulated loading forces. This paper focuses on critical features of the CCU design, results of the soldering technique testing and the data regarding permanent magnets magnetization change due to soldering. In addition it deals with optimization-assisted assembly and the performance of the assembled devices and assesses some of the results of the CCU magnets operation at CESR.

Generation of a wakefield undulator in plasma with transverse density gradient

DOE PAGES

Stupakov, Gennady V.

2017-11-30

Here, we show that a short relativistic electron beam propagating in a plasma with a density gradient perpendicular to the direction of motion generates a wakefield in which a witness bunch experiences a transverse force. A density gradient oscillating along the beam path would create a periodically varying force$-$an undulator, with an estimated strength of the equivalent magnetic field more than ten Tesla. This opens an avenue for creation of a high-strength, short-period undulators, which eventually may lead to all-plasma, free electron lasers where a plasma wakefield acceleration is naturally combined with a plasma undulator in a unifying, compact setup.

Generation of a wakefield undulator in plasma with transverse density gradient

DOE Office of Scientific and Technical Information (OSTI.GOV)

Stupakov, Gennady V.

Here, we show that a short relativistic electron beam propagating in a plasma with a density gradient perpendicular to the direction of motion generates a wakefield in which a witness bunch experiences a transverse force. A density gradient oscillating along the beam path would create a periodically varying force$-$an undulator, with an estimated strength of the equivalent magnetic field more than ten Tesla. This opens an avenue for creation of a high-strength, short-period undulators, which eventually may lead to all-plasma, free electron lasers where a plasma wakefield acceleration is naturally combined with a plasma undulator in a unifying, compact setup.

Development of a hard x-ray wavefront sensor for the EuXFEL

NASA Astrophysics Data System (ADS)

Berujon, Sebastien; Ziegler, Eric; Cojocaru, Ruxandra; Martin, Thierry

2017-05-01

We present developments on a hard X-ray wavefront sensing instrument for characterizing and monitoring the beam of the European X-ray Free Electron Lasers (EuXFEL). The pulsed nature of the intense X-ray beam delivered by this new class of facility gives rise to strong challenges for the optics and their diagnostic. In the frame of the EUCALL project Work Package 7, we are developing a sensor able to observe the beam in the X-ray energy range [8-40] keV without altering it. The sensor is based on the speckle tracking principle and employs two semi-transparent optics optimized such that their X-ray absorption is reduced. Furthermore, this instrument requires a scattering object with small random features placed in the beam and two cameras to record images of the beam at two different propagation distances. The analysis of the speckle pattern and its distortion from one image to the other allows absolute or differential wavefront recovery from pulse to pulse. Herein, we introduce the stakes and challenges of wavefront sensing at an XFEL source and explain the strategies adopted to fulfil the high requirements set by such a source.

Magnetic assessment and modelling of the Aramis undulator beamline

PubMed Central

Calvi, M.; Camenzuli, C.; Ganter, R.; Sammut, N.; Schmidt, Th.

2018-01-01

Within the SwissFEL project at the Paul Scherrer Institute (PSI), the hard X-ray line (Aramis) has been equipped with short-period in-vacuum undulators, known as the U15 series. The undulator design has been developed within the institute itself, while the prototyping and the series production have been implemented through a close collaboration with a Swiss industrial partner, Max Daetwyler AG, and several subcontractors. The magnetic measurement system has been built at PSI, together with all the data analysis tools. The Hall probe has been designed for PSI by the Swiss company SENIS. In this paper the general concepts of both the mechanical and the magnetic properties of the U15 series of undulators are presented. A description of the magnetic measurement equipment is given and the results of the magnetic measurement campaign are reported. Lastly, the data reduction methods and the associated models are presented and their actual implementation in the control system is detailed. PMID:29714179

Design of a magnetic circuit for a cryogenic undulator in Taiwan photon source

DOE Office of Scientific and Technical Information (OSTI.GOV)

Huang, Jui-Che, E-mail: huang.juiche@nsrrc.org.tw; Kuo, Cheng-Ying; Yang, Chin-Kang

2016-07-27

The plan for beamlines in Phase II at Taiwan Photon Source is to construct two new BioSAXS and nano-ARPES beamlines. A highly brilliant light source can be produced with a cryogenic undulator, and many synchrotron facilities have been developed and operated with these in their storage rings. The development of a cryogenic undulator became a target for a light source in TPS phase II. A cryogenic undulator with period of length 15 mm will be made in a hybrid magnetic structure, and use PrFeB permanent-magnet materials. A maximum magnetic field 1.31 T is estimated at gap 4 mm and temperaturemore » about 100 K. The spectral performance of a TPS cryogenic undulator is presented in this paper.« less

Simulation Study of the Helical Superconducting Undulator Installation at the Advanced Photon Source

DOE Office of Scientific and Technical Information (OSTI.GOV)

Sajaev, V.; Borland, M.; Sun, Y.

A helical superconducting undulator is planned for installation at the APS. Such an installation would be first of its kind – helical devices were never installed in synchrotron light sources before. Due to its reduced horizontal aperture, a lattice modification is required to accommodate for large horizontal oscillations during injection. We describe the lattice change details and show the new lattice experimental test results. To understand the effect of the undulator on single-particle dynamics, first, its kick maps were computed using different methods. We have found that often-used Elleaume formula* for kick maps gives wrong results for this undulator. Wemore » then used the kick maps obtained by other methods to simulate the effect of the undulator on injection and lifetime.« less

Proposed Laser-driven, Dielectric Microstructure Few-cm Long Undulator for Attosecond Coherent X-rays

DOE Office of Scientific and Technical Information (OSTI.GOV)

Plettner, T; Byer, R.L.; /Stanford U., Ginzton Lab.

This article presents the concept of an all-dielectric laser-driven undulator for the generation of coherent X-rays. The proposed laser-driven undulator is expected to produce internal deflection forces equivalent to a several-Tesla magnetic field acting on a speed-of-light particle. The key idea for this laser-driven undulator is its ability to provide phase synchronicity between the deflection force and the electron beam for a distance that is much greater than the laser wavelength. The potential advantage of this undulator is illustrated with a possible design example that assumes a small laser accelerator which delivers a 2 GeV, 1 pC, 1 kHz electronmore » bunch train to a 10 cm long, 1/2 mm period laser-driven undulator. Such an undulator could produce coherent X-ray pulses with {approx}10{sup 9} photons of 64 keV energy. The numerical modeling for the expected X-ray pulse shape was performed with GENESIS, which predicts X-ray pulse durations in the few-attosecond range. Possible applications for nonlinear electromagnetic effects from these X-ray pulses are briefly discussed.« less

Development of a High Dynamic Range Pixel Array Detector for Synchrotrons and XFELs

NASA Astrophysics Data System (ADS)

Weiss, Joel Todd

Advances in synchrotron radiation light source technology have opened new lines of inquiry in material science, biology, and everything in between. However, x-ray detector capabilities must advance in concert with light source technology to fully realize experimental possibilities. X-ray free electron lasers (XFELs) place particularly large demands on the capabilities of detectors, and developments towards diffraction-limited storage ring sources also necessitate detectors capable of measuring very high flux [1-3]. The detector described herein builds on the Mixed Mode Pixel Array Detector (MM-PAD) framework, developed previously by our group to perform high dynamic range imaging, and the Adaptive Gain Integrating Pixel Detector (AGIPD) developed for the European XFEL by a collaboration between Deustsches Elektronen-Synchrotron (DESY), the Paul-Scherrer-Institute (PSI), the University of Hamburg, and the University of Bonn, led by Heinz Graafsma [4, 5]. The feasibility of combining adaptive gain with charge removal techniques to increase dynamic range in XFEL experiments is assessed by simulating XFEL scatter with a pulsed infrared laser. The strategy is incorporated into pixel prototypes which are evaluated with direct current injection to simulate very high incident x-ray flux. A fully functional 16x16 pixel hybrid integrating x-ray detector featuring several different pixel architectures based on the prototypes was developed. This dissertation describes its operation and characterization. To extend dynamic range, charge is removed from the integration node of the front-end amplifier without interrupting integration. The number of times this process occurs is recorded by a digital counter in the pixel. The parameter limiting full well is thereby shifted from the size of an integration capacitor to the depth of a digital counter. The result is similar to that achieved by counting pixel array detectors, but the integrators presented here are designed to tolerate a

Direct Observation of Ultralow Vertical Emittance using a Vertical Undulator - presentation slides

DOE Office of Scientific and Technical Information (OSTI.GOV)

Wootton, Kent

2015-09-17

Direct emittance measurement based on vertical undulator is discussed. Emittance was evaluated from peak ratios, the smallest measured being =0.9 ±0.3 pm rad. The angular distribution of undulator radiation departs from Gaussian approximations, a fact of which diffraction-limited light sources should be aware.

Indentation and overall compression behavior of multilayered thin-film composites. Effect of undulating layer geometry

DOE PAGES

Jamison, Ryan D.; Shen, Y. -L.

2015-03-19

Two finite element models are used to investigate the behavior of aluminum/silicon carbide thin-film layered composites with imperfect internal geometry when subjected to various loadings. In both models, undulating layers are represented by regular waveforms with various amplitudes, wavelengths, and phase offsets. First, uniaxial compressive loading of the composite is considered. The modulus and stress/strain response of the composite is sensitive to both loading direction and frequency of the undulation. Second, the nanoindentation response of the composite is investigated. The derived hardness and modulus are shown to be sensitive to the presence of undulating layers and the relative size ofmore » the indenter to the undulation. Undulating layers create bands of tensile and compressive stress in the indentation direction that are significantly different from the flat layers. The amount of equivalent plastic strain in the Al layers is increased by the presence of undulating layers. The correlations between the two forms of loading, and the implications to composite property measurement are carefully examined in this study.« less

Cryogenic performance of a cryocooler-cooled superconducting undulator

DOE Office of Scientific and Technical Information (OSTI.GOV)

Fuerst, J. D.; Doose, C.; Hasse, Q.

2014-01-29

A cryocooler-cooled superconducting undulator has been installed and operated with beam at the Advanced Photon Source (APS) at Argonne National Laboratory (ANL). The device consists of a dual-core 42-pole magnet structure that is cooled to 4.2 K with a system of four cryocoolers operating in a zero-boil-off configuration. This effort represents the culmination of a development program to establish concept feasibility and evaluate cryostat design and cryocooler-based refrigeration. Cryostat performance is described including cool-down/warm-up, steady-state operation, cooling margin, and the impact of beam during operation in the APS storage ring. Plans for future devices with longer magnets, which will incorporatemore » lessons learned from the development program, are also discussed.« less

Electron dynamics and transverse-kick elimination in a high-field short-period helical microwave undulator

DOE Office of Scientific and Technical Information (OSTI.GOV)

Chang, C.; Shumail, M.; Tantawi, S.

2012-10-15

Single electron dynamics for a circular polarized standing wave (CPSW) undulator synthesized from a corrugated cavity operating with a very low-loss HE{sub 11} mode are analyzed. The mechanism of the transverse drift of the CPSW undulator and its elimination are researched, and the tapered-field ends are found effectively to suppress the kick. A prototype of the CPSW undulator with the characters of short undulating-period 1.4 cm, high field K {approx} 1, large aperture {approx} 5 cm, and variable polarization is designed and modeled, whose 3-dimensional electromagnetic fields are used to research the suppression of the transverse kick.

Layout of bunch compressor for Beijing XFEL test facility

NASA Astrophysics Data System (ADS)

Zhu, Xiongwei; Du, Yingchao; He, Xiaozhong; Yang, Yufeng

2006-10-01

In this paper, we describe the layout of the bunch compressor for the Beijing XFEL test facility (BTF). Our bunch compressor setup is different from the usual one due to the space limit. The compensation X-BAND cavity and the first bunch compressor are separate in distance. The electron bunch is decelerated first and then accelerated to enter the first bunch compressor. The simulation result shows that our setup works well, and the nonlinear term is well compensated. Also, we present the result about the CSR emittance dilution study. Finally, we develop a program to study microbunch instability in the second BTF bunch compressor.

Preliminary Analysis of a 27.5 mm Period Undulator for the MBA Lattice

DOE Office of Scientific and Technical Information (OSTI.GOV)

Abliz, M.; Grimmer, J.

2016-07-27

The magnetic design of a 27.5 mm period undulator was performed for the APS MBA Lattice. One purpose of the magnetic design was to decrease the magnetic force in order to operate the undulator successfully at a smaller gap compared to the existing 27 mm undulator at the APS. As a result, the magnetic force is decreased by about 18% at a gap of 11 mm and the total volume of the magnet and the pole is decreased by approximately 22% with the new model. The calculated effective field with the new model was 172 G higher than the existingmore » 27-mm period undulator with a gap of 11 mm. The calculated field roll-off with the new optimized model is within the requirements of the MBA, in the range of ± 5 mm.« less

Imaging shock waves in diamond with both high temporal and spatial resolution at an XFEL

DOE PAGES

Schropp, Andreas; Hoppe, Robert; Meier, Vivienne; ...

2015-06-18

The advent of hard x-ray free-electron lasers (XFELs) has opened up a variety of scientific opportunities in areas as diverse as atomic physics, plasma physics, nonlinear optics in the x-ray range, and protein crystallography. In this article, we access a new field of science by measuring quantitatively the local bulk properties and dynamics of matter under extreme conditions, in this case by using the short XFEL pulse to image an elastic compression wave in diamond. The elastic wave was initiated by an intense optical laser pulse and was imaged at different delay times after the optical pump pulse using magnifiedmore » x-ray phase-contrast imaging. The temporal evolution of the shock wave can be monitored, yielding detailed information on shock dynamics, such as the shock velocity, the shock front width, and the local compression of the material. The method provides a quantitative perspective on the state of matter in extreme conditions.« less

Imaging Shock Waves in Diamond with Both High Temporal and Spatial Resolution at an XFEL.

PubMed

Schropp, Andreas; Hoppe, Robert; Meier, Vivienne; Patommel, Jens; Seiboth, Frank; Ping, Yuan; Hicks, Damien G; Beckwith, Martha A; Collins, Gilbert W; Higginbotham, Andrew; Wark, Justin S; Lee, Hae Ja; Nagler, Bob; Galtier, Eric C; Arnold, Brice; Zastrau, Ulf; Hastings, Jerome B; Schroer, Christian G

2015-06-18

The advent of hard x-ray free-electron lasers (XFELs) has opened up a variety of scientific opportunities in areas as diverse as atomic physics, plasma physics, nonlinear optics in the x-ray range, and protein crystallography. In this article, we access a new field of science by measuring quantitatively the local bulk properties and dynamics of matter under extreme conditions, in this case by using the short XFEL pulse to image an elastic compression wave in diamond. The elastic wave was initiated by an intense optical laser pulse and was imaged at different delay times after the optical pump pulse using magnified x-ray phase-contrast imaging. The temporal evolution of the shock wave can be monitored, yielding detailed information on shock dynamics, such as the shock velocity, the shock front width, and the local compression of the material. The method provides a quantitative perspective on the state of matter in extreme conditions.

Spatial uncertainty of a geoid undulation model in Guayaquil, Ecuador

NASA Astrophysics Data System (ADS)

Chicaiza, E. G.; Leiva, C. A.; Arranz, J. J.; Buenańo, X. E.

2017-06-01

Geostatistics is a discipline that deals with the statistical analysis of regionalized variables. In this case study, geostatistics is used to estimate geoid undulation in the rural area of Guayaquil town in Ecuador. The geostatistical approach was chosen because the estimation error of prediction map is getting. Open source statistical software R and mainly geoR, gstat and RGeostats libraries were used. Exploratory data analysis (EDA), trend and structural analysis were carried out. An automatic model fitting by Iterative Least Squares and other fitting procedures were employed to fit the variogram. Finally, Kriging using gravity anomaly of Bouguer as external drift and Universal Kriging were used to get a detailed map of geoid undulation. The estimation uncertainty was reached in the interval [-0.5; +0.5] m for errors and a maximum estimation standard deviation of 2 mm in relation with the method of interpolation applied. The error distribution of the geoid undulation map obtained in this study provides a better result than Earth gravitational models publicly available for the study area according the comparison with independent validation points. The main goal of this paper is to confirm the feasibility to use geoid undulations from Global Navigation Satellite Systems and leveling field measurements and geostatistical techniques methods in order to use them in high-accuracy engineering projects.

Design and Fabrication of Soft Morphing Ray Propulsor: Undulator and Oscillator.

PubMed

Kim, Hyung-Soo; Lee, Jang-Yeob; Chu, Won-Shik; Ahn, Sung-Hoon

2017-03-01

A soft morphing ray propulsor capable of generating an undulating motion in its pectoral fins was designed and fabricated. The propulsor used shape memory alloy for actuation, and the body was made with soft polymers. To determine the effects of undulation in the fins, two models that differed in terms of the presence of undulation were fabricated using different polymer materials. The experimental models were tested with a dynamometer to measure and compare thrust tendencies. Thrust measurements were conducted with various fin beat frequencies. Using the experimental data, the concept of an optimized standalone version of the ray robot was suggested and its prototype was fabricated. The fabricated robot was able to swim as fast as 0.26 body length per second and 38% more efficient than other smart material-based ray-like underwater robots.

Power spectra of geoid undulations. [definition of altimeter design requirements for geoid recovery

NASA Technical Reports Server (NTRS)

Brown, R. D.

1975-01-01

Data from spacecraft altimeters are expected to contribute to an improved determination of the marine geoid. To better define altimeter system design requirements for geoid recovery, amplitudes of geoid undulations at short wavelengths were examined. Models of detailed geoids in selected areas around the earth, developed from a combination of satellite derived spherical harmonics and 1 deg-by-1 deg area mean free-air gravity anomalies, were subjected to a spectral analysis. The resulting undulation power spectra were compared to existing estimates for the magnitude of geoid undulations at short wavelengths. The undulation spectra were found to be consistent with Kaula's rule of thumb, following an inverse third power relationship with spatial frequency for wavelengths at least as small as 300 km. The requirements imposed by this relationship on altimeter accuracy, data rate, and horizontal resolution to meet the goal of a detailed geoid description are discussed.

Marine Geoid Undulation Assessment Over South China Sea Using Global Geopotential Models and Airborne Gravity Data

NASA Astrophysics Data System (ADS)

Yazid, N. M.; Din, A. H. M.; Omar, K. M.; Som, Z. A. M.; Omar, A. H.; Yahaya, N. A. Z.; Tugi, A.

2016-09-01

Global geopotential models (GGMs) are vital in computing global geoid undulations heights. Based on the ellipsoidal height by Global Navigation Satellite System (GNSS) observations, the accurate orthometric height can be calculated by adding precise and accurate geoid undulations model information. However, GGMs also provide data from the satellite gravity missions such as GRACE, GOCE and CHAMP. Thus, this will assist to enhance the global geoid undulations data. A statistical assessment has been made between geoid undulations derived from 4 GGMs and the airborne gravity data provided by Department of Survey and Mapping Malaysia (DSMM). The goal of this study is the selection of the best possible GGM that best matches statistically with the geoid undulations of airborne gravity data under the Marine Geodetic Infrastructures in Malaysian Waters (MAGIC) Project over marine areas in Sabah. The correlation coefficients and the RMS value for the geoid undulations of GGM and airborne gravity data were computed. The correlation coefficients between EGM 2008 and airborne gravity data is 1 while RMS value is 0.1499.In this study, the RMS value of EGM 2008 is the lowest among the others. Regarding to the statistical analysis, it clearly represents that EGM 2008 is the best fit for marine geoid undulations throughout South China Sea.

Irradiation caused performance losses of undulators equipped with Sm2Co17 magnets

NASA Astrophysics Data System (ADS)

Heidrich, S.; Aulenbacher, K.; Donders, S.; Nikipelov, A.

2018-06-01

The effects of beam losses on the performance of undulators equipped with Sm2Co17 magnets were investigated at the 855 MeV beamline of the Mainzer Microtron MAMI. Therefore, different cases containing undulator components as well as complete undulator assemblies were irradiated. Different types of shielding were used to distinguish the magnetic field degradation caused by neutrons from the degradation caused by electrons and photons. The results of each case were put in relation with the expected beam losses of a conceptional 10 kW free-electron-laser (FEL) based on an electron beam with 34 MW beam power.

Commissioning of the soft x-ray undulator beamline at the Siam Photon Laboratory

DOE Office of Scientific and Technical Information (OSTI.GOV)

Nakajima, Hideki, E-mail: hideki@slri.or.th; Chaichuay, Sarunyu; Sudmuang, Porntip

2016-07-27

The synchrotron radiation from the first undulator at the Siam Photon Laboratory was characterized with the photon beam position monitors (BPMs) and grating monochromator. The soft x-ray undulator beamline employs a varied line-spacing plane grating monochromator with three interchangeable gratings. Since 2010, the beamline has delivered photons with energy of 40-160 and 220-1040 eV at the resolving power of 10,000 for user services at the two end- stations that utilize the photoemission electron spectroscopy and microscopy techniques. The undulator power-density distributions measured by the 0.05-mm wire-scan BPM were in good agreement with those in simulation. The flux-density distributions were evaluatedmore » in the red-shift measurements, which identify the central cone of radiation and its distribution. Since 2014, the operation of the other insertion devices in the storage ring has started, and consequently bought about the increases in the emittance from 41 to 61 nm·rad and the coupling constant from 4 to 11%. The local electron-orbit correction greatly improved the alignment of the electron beam in the undulator section resulting in the improvements of the photon flux and harmonics peaks of the undulator radiation.« less

Commissioning for the European XFEL facility

NASA Astrophysics Data System (ADS)

Nölle, D.

2017-06-01

The European XFEL is a 4th generation light source based on the Self Amplified Spontaneous Emission (SASE) FreeElectron-Laser concept. It is currently being commissioned in North- Germany. The core installation is a 17.5 GeV superconducting accelerator driving 3 SASE lines with photon energies from 1 to beyond 20 keV range with a maximum of 27.000 pulses per second. The international facility is organized as a limited liability company with shareholders from the contributing countries. DESY has taken over the leadership of the accelerator construction consortium, and will be in charge of the operation of the accelerator complex. The facility was set up with contributions from the 11 shareholder countries, either being hardware systems and/or staff or cash contributions. The construction is almost complete, and the commissioning phase has started by the end of 2015. This contribution will report the status of the accelerator complex with emphasis on the commissioning of the accelerator and an outlook to the commissioning of the SASE 1 FEL line.

Observation of an optical vortex beam from a helical undulator in the XUV region.

PubMed

Kaneyasu, Tatsuo; Hikosaka, Yasumasa; Fujimoto, Masaki; Iwayama, Hiroshi; Hosaka, Masahito; Shigemasa, Eiji; Katoh, Masahiro

2017-09-01

The observation of an optical vortex beam at 60 nm wavelength, produced as the second-harmonic radiation from a helical undulator, is reported. The helical wavefront of the optical vortex beam was verified by measuring the interference pattern between the vortex beam from a helical undulator and a normal beam from another undulator. Although the interference patterns were slightly blurred owing to the relatively large electron beam emittance, it was possible to observe the interference features thanks to the helical wavefront of the vortex beam. The experimental results were well reproduced by simulation.

Accuracy assessment of linear spectral mixture model due to terrain undulation

NASA Astrophysics Data System (ADS)

Wang, Tianxing; Chen, Songlin; Ma, Ya

2008-12-01

Mixture spectra are common in remote sensing due to the limitations of spatial resolution and the heterogeneity of land surface. During the past 30 years, a lot of subpixel model have developed to investigate the information within mixture pixels. Linear spectral mixture model (LSMM) is a simper and more general subpixel model. LSMM also known as spectral mixture analysis is a widely used procedure to determine the proportion of endmembers (constituent materials) within a pixel based on the endmembers' spectral characteristics. The unmixing accuracy of LSMM is restricted by variety of factors, but now the research about LSMM is mostly focused on appraisement of nonlinear effect relating to itself and techniques used to select endmembers, unfortunately, the environment conditions of study area which could sway the unmixing-accuracy, such as atmospheric scatting and terrain undulation, are not studied. This paper probes emphatically into the accuracy uncertainty of LSMM resulting from the terrain undulation. ASTER dataset was chosen and the C terrain correction algorithm was applied to it. Based on this, fractional abundances for different cover types were extracted from both pre- and post-C terrain illumination corrected ASTER using LSMM. Simultaneously, the regression analyses and the IKONOS image were introduced to assess the unmixing accuracy. Results showed that terrain undulation could dramatically constrain the application of LSMM in mountain area. Specifically, for vegetation abundances, a improved unmixing accuracy of 17.6% (regression against to NDVI) and 18.6% (regression against to MVI) for R2 was achieved respectively by removing terrain undulation. Anyway, this study indicated in a quantitative way that effective removal or minimization of terrain illumination effects was essential for applying LSMM. This paper could also provide a new instance for LSMM applications in mountainous areas. In addition, the methods employed in this study could be

Antiaging activity of low molecular weight peptide from Paphia undulate

NASA Astrophysics Data System (ADS)

Chen, Xin; Cai, Bingna; Chen, Hua; Pan, Jianyu; Chen, Deke; Sun, Huili

2013-05-01

Low molecular weight peptide (LMWP) was prepared from clam Paphia undulate and its antiaging effect on D-galactose-induced acute aging in rats, aged Kunming mice, ultraviolet-exposed rats, and thermally injured rats was investigated. P. undulate flesh was homogenized and digested using papain under optimal conditions, then subjected to Sephadex G-25 chromatography to isolate the LMWP. Administration of LMWP significantly reversed D-galactose-induced oxidative stress by increasing the activities of glutathione peroxidase (GPx) and catalase (CAT), and by decreasing the level of malondialdehyde (MDA). This process was accompanied by increased collagen synthesis. The LMWP prevented photoaging and promoted dermis recovery and remission of elastic fiber hyperplasia. Furthermore, treatment with the LMWP helped to regenerate elastic fibers and the collagen network, increased superoxide dismutase (SOD) in the serum and significantly decreased MDA. Thermal scald-induced inflammation and edema were also relieved by the LWMP, while wound healing in skin was promoted. These results suggest that the LMWP from P. undulate could serve as a new antiaging substance in cosmetics.

Two-colour hard X-ray free-electron laser with wide tunability.

PubMed

Hara, Toru; Inubushi, Yuichi; Katayama, Tetsuo; Sato, Takahiro; Tanaka, Hitoshi; Tanaka, Takashi; Togashi, Tadashi; Togawa, Kazuaki; Tono, Kensuke; Yabashi, Makina; Ishikawa, Tetsuya

2013-01-01

Ultrabrilliant, femtosecond X-ray pulses from X-ray free-electron lasers (XFELs) have promoted the investigation of exotic interactions between intense X-rays and matters, and the observation of minute targets with high spatio-temporal resolution. Although a single X-ray beam has been utilized for these experiments, the use of multiple beams with flexible and optimum beam parameters should drastically enhance the capability and potentiality of XFELs. Here we show a new light source of a two-colour double-pulse (TCDP) XFEL in hard X-rays using variable-gap undulators, which realizes a large and flexible wavelength separation of more than 30% with an ultraprecisely controlled time interval in the attosecond regime. Together with sub-10-fs pulse duration and multi-gigawatt peak powers, the TCDP scheme enables us to elucidate X-ray-induced ultrafast transitions of electronic states and structures, which will significantly contribute to the advancement of ultrafast chemistry, plasma and astronomical physics, and quantum X-ray optics.

Absolute measurement of undulator radiation in the extreme ultraviolet

NASA Astrophysics Data System (ADS)

Maezawa, H.; Mitani, S.; Suzuki, Y.; Kanamori, H.; Tamamushi, S.; Mikuni, A.; Kitamura, H.; Sasaki, T.

1983-04-01

The spectral brightness of undulator radiation emitted by the model PMU-1 incorporated in the SOR-RING, the dedicated synchrotron radiation source in Tokyo, has been studied in the extreme ultraviolet region from 21.6 to 72.9 eV as a function of the electron energy γ, the field parameter K, and the angle of observation ϴ in the absolute scale. A series of measurements covering the first and the second harmonic component of undulator radiation was compared with the fundamental formula λ n= {λ 0}/{2nγ 2}( {1+K 2}/{2}+γϴ 2 and the effects of finite emittance were studied. The brightness at the first peak was smaller than the theoretical value, while an enhanced second harmonic component was observed.

X-ray imaging detectors for synchrotron and XFEL sources

PubMed Central

Hatsui, Takaki; Graafsma, Heinz

2015-01-01

Current trends for X-ray imaging detectors based on hybrid and monolithic detector technologies are reviewed. Hybrid detectors with photon-counting pixels have proven to be very powerful tools at synchrotrons. Recent developments continue to improve their performance, especially for higher spatial resolution at higher count rates with higher frame rates. Recent developments for X-ray free-electron laser (XFEL) experiments provide high-frame-rate integrating detectors with both high sensitivity and high peak signal. Similar performance improvements are sought in monolithic detectors. The monolithic approach also offers a lower noise floor, which is required for the detection of soft X-ray photons. The link between technology development and detector performance is described briefly in the context of potential future capabilities for X-ray imaging detectors. PMID:25995846

Accurate determination of the geoid undulation N

NASA Astrophysics Data System (ADS)

Lambrou, E.; Pantazis, G.; Balodimos, D. D.

2003-04-01

This work is related to the activities of the CERGOP Study Group Geodynamics of the Balkan Peninsula, presents a method for the determination of the variation ΔN and, indirectly, of the geoid undulation N with an accuracy of a few millimeters. It is based on the determination of the components xi, eta of the deflection of the vertical using modern geodetic instruments (digital total station and GPS receiver). An analysis of the method is given. Accuracy of the order of 0.01arcsec in the estimated values of the astronomical coordinates Φ and Δ is achieved. The result of applying the proposed method in an area around Athens is presented. In this test application, a system is used which takes advantage of the capabilities of modern geodetic instruments. The GPS receiver permits the determination of the geodetic coordinates at a chosen reference system and, in addition, provides accurate timing information. The astronomical observations are performed through a digital total station with electronic registering of angles and time. The required accuracy of the values of the coordinates is achieved in about four hours of fieldwork. In addition, the instrumentation is lightweight, easily transportable and can be setup in the field very quickly. Combined with a stream-lined data reduction procedure and the use of up-to-date astrometric data, the values of the components xi, eta of the deflection of the vertical and, eventually, the changes ΔN of the geoid undulation are determined easily and accurately. In conclusion, this work demonstrates that it is quite feasible to create an accurate map of the geoid undulation, especially in areas that present large geoid variations and other methods are not capable to give accurate and reliable results.

Gelatinous fibers and variant secondary growth related to stem undulation and contraction in a monkey ladder vine, Bauhinia glabra (Fabaceae).

PubMed

Fisher, Jack B; Blanco, Mario A

2014-04-01

Some of the most striking stem shapes occur in species of Bauhinia (Fabaceae) known as monkey ladder vines. Their mature stems are flattened and develop regular undulations. Although stems have variant (anomalous) secondary growth, the mechanism causing the undulations is unknown. We measured stem segments over time (20 mo), described stem development using light microscopy, and correlated the changes in stem shape with anatomy. Growing stems are initially straight and bear tendrils on short axillary branches. The inner secondary xylem has narrow vessels and lignified fibers. As stems age, they become flattened and increasingly undulated with the production of two lobes of outer secondary xylem (OX) with wide vessels and only gelatinous fibers (G-fibers). Similar G-fibers are present in the secondary phloem and the cortical sclerified layer. In transverse sections, the concave side of each undulation has a greater area and quantity of G-fibers than the opposite convex side. Some older stems are not undulated and have less lobing of OX. Undulation causes a shortening of the stem segments: up to 28% of the original length. Uneven distribution of G-fibers produces tensions that are involved in the protracted development of undulations. While young extending shoots attach by lateral branch tendrils, older stems may maintain their position in the canopy using undulations and persistent branch bases as gripping devices. Flattened and undulated stems with G-fibers produce flexible woody stems.

Vertically polarizing undulator with dynamic compensation of magnetic forces

DOE PAGES

Strelnikov, N.; Vasserman, I.; Xu, J.; ...

2017-01-20

As part of the R&D program of the LCLS-II project, a novel 3.4-meter-long undulator prototype with horizontal magnetic field and dynamic force compensation has recently been developed at the Advanced Photon Source (APS). Some previous steps in this development were the shorter 0.8-meter-long and 2.8-meter-long prototypes. Extensive mechanical and magnetic testing was carried out for each prototype, and each prototype was magnetically tuned using magnetic shims. Furthermore, the resulting performance of the 3.4-meter-long undulator prototype meets all requirements for the LCLS-II insertion device, including limits on the field integrals, phase errors, higher-order magnetic moments, and electron-beam trajectory for all operationalmore » gaps, as well as the reproducibility and accuracy of the gap settings.« less

An undulator based soft x-ray source for microscopy on the Duke electron storage ring

NASA Astrophysics Data System (ADS)

Johnson, Lewis Elgin

1998-09-01

This dissertation describes the design, development, and installation of an undulator-based soft x-ray source on the Duke Free Electron Laser laboratory electron storage ring. Insertion device and soft x-ray beamline physics and technology are all discussed in detail. The Duke/NIST undulator is a 3.64-m long hybrid design constructed by the Brobeck Division of Maxwell Laboratories. Originally built for an FEL project at the National Institute of Standards and Technology, the undulator was acquired by Duke in 1992 for use as a soft x-ray source for the FEL laboratory. Initial Hall probe measurements on the magnetic field distribution of the undulator revealed field errors of more than 0.80%. Initial phase errors for the device were more than 11 degrees. Through a series of in situ and off-line measurements and modifications we have re-tuned the magnet field structure of the device to produce strong spectral characteristics through the 5th harmonic. A low operating K has served to reduce the effects of magnetic field errors on the harmonic spectral content. Although rms field errors remained at 0.75%, we succeeded in reducing phase errors to less than 5 degrees. Using trajectory simulations from magnetic field data, we have computed the spectral output given the interaction of the Duke storage ring electron beam and the NIST undulator. Driven by a series of concerns and constraints over maximum utility, personnel safety and funding, we have also constructed a unique front end beamline for the undulator. The front end has been designed for maximum throughput of the 1st harmonic around 40A in its standard mode of operation. The front end has an alternative mode of operation which transmits the 3rd and 5th harmonics. This compact system also allows for the extraction of some of the bend magnet produced synchrotron and transition radiation from the storage ring. As with any well designed front end system, it also provides excellent protection to personnel and to the

Advances in Large Grain Resonators for the European XFEL

NASA Astrophysics Data System (ADS)

Singer, W.; Aderhold, S.; Iversen, J.; Kreps, G.; Matheisen, A.; Singer, X.; Twarowski, K.; Weise, H.; Pekeler, M.; Scholz, F.; Spaniol, B.; Stiedl, E.

2011-03-01

An overview of the activities within the DESY test program of 1.3 GHz TESLA shape 9-cell Large Grain (LG) resonators for the European XFEL, which have taken place in last 4 years, is presented. Attention is devoted to development of LG disc production and cavity fabrication from this material, focusing in particular on aspects of production at reasonable accuracy and costs. More than 200 LG discs were manufactured, eleven 9-cell resonators produced, partially treated at the company Research Instruments (RI) (former ACCEL) and finally treated and RF tested at DESY. Two of the LG cavities are currently used in the FLASH accelerator operation, which is the best demonstration of the feasibility of the LG application. The program compares large grain material with standard sheet niobium. Some data and perspectives of the LG application are discussed.

Curvature-undulation coupling as a basis for curvature sensing and generation in bilayer membranes.

PubMed

Bradley, Ryan P; Radhakrishnan, Ravi

2016-08-30

We present coarse-grained molecular dynamics simulations of the epsin N-terminal homology domain interacting with a lipid bilayer and demonstrate a rigorous theoretical formalism and analysis method for computing the induced curvature field in varying concentrations of the protein in the dilute limit. Our theory is based on the description of the height-height undulation spectrum in the presence of a curvature field. We formulated an objective function to compare the acquired undulation spectrum from the simulations to that of the theory. We recover the curvature field parameters by minimizing the objective function even in the limit where the protein-induced membrane curvature is of the same order as the amplitude due to thermal undulations. The coupling between curvature and undulations leads to significant predictions: (i) Under dilute conditions, the proteins can sense a site of spontaneous curvature at distances much larger than their size; (ii) as the density of proteins increases the coupling focuses and stabilizes the curvature field to the site of the proteins; and (iii) the mapping of the protein localization and the induction of a stable curvature is a cooperative process that can be described through a Hill function.

Curvature–undulation coupling as a basis for curvature sensing and generation in bilayer membranes

PubMed Central

Bradley, Ryan P.; Radhakrishnan, Ravi

2016-01-01

We present coarse-grained molecular dynamics simulations of the epsin N-terminal homology domain interacting with a lipid bilayer and demonstrate a rigorous theoretical formalism and analysis method for computing the induced curvature field in varying concentrations of the protein in the dilute limit. Our theory is based on the description of the height–height undulation spectrum in the presence of a curvature field. We formulated an objective function to compare the acquired undulation spectrum from the simulations to that of the theory. We recover the curvature field parameters by minimizing the objective function even in the limit where the protein-induced membrane curvature is of the same order as the amplitude due to thermal undulations. The coupling between curvature and undulations leads to significant predictions: (i) Under dilute conditions, the proteins can sense a site of spontaneous curvature at distances much larger than their size; (ii) as the density of proteins increases the coupling focuses and stabilizes the curvature field to the site of the proteins; and (iii) the mapping of the protein localization and the induction of a stable curvature is a cooperative process that can be described through a Hill function. PMID:27531962

Propulsive Forces of a Biomimetic Undulating Fin

NASA Astrophysics Data System (ADS)

Kalumuck, Kenneth; Brandt, Alan; Armand, Mehran

2007-11-01

Understanding gained from much recent work on force production mechanisms of aquatic organisms holds great promise for improved undersea vehicle propulsion and maneuvering. One class of fish locomotion is that of the median fin utilized by animals such as squid, cuttlefish, knifefish, and seahorse. It is characterized by undulatory motion that creates traveling waves along the fin. Results of experiments conducted on a submerged mechanical underwater undulating fin test bed are presented. The 0.5 m long fin is mounted to a cylindrical body and consists of a flexible skin attached to ribs driven by an adjustable cam mechanism and variable speed motor that enables changing the characteristics of the undulating wave(s). Forces produced were measured in a captive mode under quiescent conditions as well in the presence of an ambient current. Propulsive forces are characterized as a function of the fin width, oscillation frequency, amplitude, and wavelength. Free swimming experiments were also conducted to determine the point of self propulsion. Flow field structure visualization using dye tracers is presented for selected cases. Estimates of performance and applications for use with larger scale vehicles are discussed.

Three-dimensional, time-dependent simulation of free-electron lasers with planar, helical, and elliptical undulators

NASA Astrophysics Data System (ADS)

Freund, H. P.; van der Slot, P. J. M.; Grimminck, D. L. A. G.; Setija, I. D.; Falgari, P.

2017-02-01

Free-electron lasers (FELs) have been built ranging in wavelength from long-wavelength oscillators using partial wave guiding through ultraviolet through hard x-ray that are either seeded or start from noise. In addition, FELs that produce different polarizations of the output radiation ranging from linear through elliptic to circular polarization are currently under study. In this paper, we develop a three-dimensional, time-dependent formulation that is capable of modeling this large variety of FEL configurations including different polarizations. We employ a modal expansion for the optical field, i.e., a Gaussian expansion with variable polarization for free-space propagation. This formulation uses the full Newton-Lorentz force equations to track the particles through the optical and magnetostatic fields. As a result, arbitrary three-dimensional representations for different undulator configurations are implemented, including planar, helical, and elliptical undulators. In particular, we present an analytic model of an APPLE-II undulator to treat arbitrary elliptical polarizations, which is used to treat general elliptical polarizations. To model oscillator configurations, and allow propagation of the optical field outside the undulator and interact with optical elements, we link the FEL simulation with the optical propagation code OPC. We present simulations using the APPLE-II undulator model to produce elliptically polarized output radiation, and present a detailed comparison with recent experiments using a tapered undulator configuration at the Linac Coherent Light Source. Validation of the nonlinear formation is also shown by comparison with experimental results obtained in the Sorgente Pulsata Auto-amplificata di Radiazione Coerente SASE FEL experiment at ENEA Frascati, a seeded tapered amplifier experiment at Brookhaven National Laboratory, and the 10 kW upgrade oscillator experiment at the Thomas Jefferson National Accelerator Facility.

Widely tunable narrow-band coherent Terahertz radiation from an undulator at THU

NASA Astrophysics Data System (ADS)

Su, X.; Wang, D.; Tian, Q.; Liang, Y.; Niu, L.; Yan, L.; Du, Y.; Huang, W.; Tang, C.

2018-01-01

There is anxious demand for intense widely tunable narrow-band Terahertz (THz) radiation in scientific research, which is regarded as a powerful tool for the coherent control of matter. We report the generation of widely tunable THz radiation from a planar permanent magnet undulator at Tsinghua University (THU). A relativistic electron beam is compressed by a magnetic chicane into sub-ps bunch length to excite THz radiation in the undulator coherently. The THz frequency can be tuned from 0.4 THz to 10 THz continuously with narrow-band spectrums when the undulator gap ranges from 23 mm to 75 mm. The measured pulse THz radiation energy from 220 pC bunch is 3.5 μJ at 1 THz and tens of μJ pulse energy (corresponding peak power of 10 MW) can be obtained when excited by 1 nC beam extrapolated from the property of coherent radiation. The experimental results agree well with theoretical predictions, which demonstrates a suitable THz source for the many applications that require intense and widely tunable THz sources.

Triggering for Magnetic Field Measurements of the LCLS Undulators

DOE Office of Scientific and Technical Information (OSTI.GOV)

Hacker, Kirsten

A triggering system for magnetic field measurements of the LCLS undulators has been built with a National Instruments PXI-1002 and a Xylinx FPGA board. The system generates single triggers at specified positions, regardless of encoder sensor jitter about a linear scale.

Fresh-slice multicolour X-ray free-electron lasers

DOE PAGES

Lutman, Alberto A.; Maxwell, Timothy J.; MacArthur, James P.; ...

2016-10-24

X-ray free-electron lasers (XFELs) provide femtosecond X-ray pulses with a narrow energy bandwidth and unprecedented brightness. Ultrafast physical and chemical dynamics, initiated with a site-specific X-ray pulse, can be explored using XFELs with a second ultrashort X-ray probe pulse. However, existing double-pulse schemes are complicated, difficult to customize or provide only low-intensity pulses. Here we present the novel fresh-slice technique for multicolour pulse production, wherein different temporal slices of an electron bunch lase to saturation in separate undulator sections. This method combines electron bunch tailoring from a passive wakefield device with trajectory control to provide multicolour pulses. The fresh-slice schememore » outperforms existing techniques at soft X-ray wavelengths. It produces femtosecond pulses with a power of tens of gigawatts and flexible colour separation. The pulse delay can be varied from temporal overlap to almost one picosecond. As a result, we also demonstrate the first three-colour XFEL and variably polarized two-colour pulses.« less

Negative-mass mitigation of Coulomb repulsion for terahertz undulator radiation of electron bunches

DOE Office of Scientific and Technical Information (OSTI.GOV)

Balal, N.; Magory, E.; Bandurkin, I. V.

2015-10-19

It is proposed to utilize the effect of negative mass for stabilization of the effective axial size of very dense and short electron bunches produced by photo-injector guns by using combined undulator and strong uniform magnetic fields. It has been shown that in the “abnormal” regime, an increase in the electron energy leads to a decrease in the axial velocity of the electron; due to the negative-mass effect, the Coulomb repulsion of electrons leads to their attraction and formation of a fairly stable and compact bunch “nucleus.” An undulator with a strong uniform magnetic field providing the negative-mass effect ismore » designed for an experimental source of terahertz radiation. The use of the negative-mass regime in this experiment should result in a long-pulse coherent spontaneous undulator emission from a short dense moderately relativistic (5.5 MeV) photo-injector electron bunch with a high (up to 20%) efficiency and a narrow frequency spectrum.« less

Progress on the superconducting undulator for ANKA and on the instrumentation for R&D

NASA Astrophysics Data System (ADS)

Casalbuoni, Sara; Baumbach, Tilo; Grau, Andreas; Hagelstein, Michael; de Jauregui, David Saez; Boffo, Cristian; Borlein, Markus; Walter, Wolfgang; Magerl, Andreas; Mashkina, Elena; Vassiljev, Nikita

2010-06-01

Superconducting undulators show a larger magnetic field strength for the same gap and period length, as compared to permanent magnet devices, which allows to generate X-ray beams of higher brilliance and with harder spectrum. The worldwide first short period length superconducting undulator is in operation since 2005 at the synchrotron light source ANKA in Karlsruhe [1]. To further drive the development in this field a research and development program is being carried out. In this contribution we report on the last progress of the construction of a 1.5 m long superconducting undulator with a period length of 15 mm, planned to be installed in ANKA beginning 2010 to be the light source of the new beamline NANO for high resolution X-ray scattering. The key specifications of the system are an undulator parameter K higher than 2 (with a magnetic gap of 5 mm) and a phase error smaller than 3.5 degrees. Cryocoolers will keep the coils at 4.2 K for a beam heat load of 4 W. The ongoing R&D includes improvements in understanding of the magnetic field properties and of the beam heat load mechanisms. The tools and instruments under development to fulfill these tasks are also discussed.

APS undulator and wiggler sources: Monte-Carlo simulation

DOE Office of Scientific and Technical Information (OSTI.GOV)

Xu, S.L.; Lai, B.; Viccaro, P.J.

1992-02-01

Standard insertion devices will be provided to each sector by the Advanced Photon Source. It is important to define the radiation characteristics of these general purpose devices. In this document,results of Monte-Carlo simulation are presented. These results, based on the SHADOW program, include the APS Undulator A (UA), Wiggler A (WA), and Wiggler B (WB).

Optimization of the LCLS X-Ray FEL Output Performance in the Presence of Strong Undulator Wakefields

DOE Office of Scientific and Technical Information (OSTI.GOV)

Reiche, S.; /UCLA; Bane, K.L.F.

The Linac Coherent Light Source (LCLS) Free-Electron Laser will operate in the wavelength range of 1.5 to 15 Angstroms. Energy loss due to wakefields within the long undulator can degrade the FEL process by detuning the resonant FEL frequency. The wakefields arise from the vacuum chamber wall resistivity, its surface roughness, and abrupt changes in its aperture. For LCLS parameters, the resistive component is the most critical and depends upon the chamber material (e.g. Cu) and its radius. To study the expected performance in the presence of these wakefields, we make a series of start-to-end simulations with tracking codes PARMELAmore » and ELEGANT and time-dependent FEL simulation codes Genesis 1.3 and Ginger. We discuss the impact of the wakefield on output energy, spectral bandwidth, and temporal envelope of the output FEL pulse, as well as the benefits of a partial compensation obtained with a slight z dependent taper in the undulator field. We compare these results to those obtained by decreasing the bunch charge or increasing the vacuum chamber radius. We also compare our results to those predicted in concurrent analytical work.« less

Beamline front end for in-vacuum short period undulator at the photon factory storage ring

DOE Office of Scientific and Technical Information (OSTI.GOV)

Miyauchi, Hiroshi, E-mail: hiroshi.miyauchi@kek.jp; Department of Accelerator Science, School of High Energy Accelerator Science, SOKENDAI; Tahara, Toshihiro, E-mail: ttahara@post.kek.jp

The straight-section upgrade project of the Photon Factory created four new short straight sections capable of housing in-vacuum short period undulators. The first to fourth short period undulators SGU#17, SGU#03, SGU#01 and SGU#15 were installed at the 2.5-GeV Photon Factory storage ring in 2005, 2006, 2009 and 2013, respectively. The beamline front end for SGU#15 is described in this paper.

Physical mechanism for flat-to-lenticular lens conversion in homogeneous liquid crystal cell with periodically undulated electrode.

PubMed

Na, Jun-Hee; Park, Seung Chul; Kim, Se-Um; Choi, Yoonseuk; Lee, Sin-Doo

2012-01-16

A convertible lenticular liquid crystal (LC) lens architecture is demonstrated using an index-matched planarization layer on a periodically undulated electrode for the homogeneous alignment of an LC. It is found that the in-plane component of the electric field by the undulated electrode plays a primary role in the flat-to-lens effect while the out-of-plane component contributes to the anchoring enhancement of the LC molecules in the surface layer. Our LC device having an index-matched planarization layer on the undulated electrode is capable of achieving the electrical tunability from the flat surface to the lenticular lens suitable for 2D/3D convertible displays.

Development and operating experience of a 1.1-m-long superconducting undulator at the Advanced Photon Source

NASA Astrophysics Data System (ADS)

Ivanyushenkov, Y.; Harkay, K.; Borland, M.; Dejus, R.; Dooling, J.; Doose, C.; Emery, L.; Fuerst, J.; Gagliano, J.; Hasse, Q.; Kasa, M.; Kenesei, P.; Sajaev, V.; Schroeder, K.; Sereno, N.; Shastri, S.; Shiroyanagi, Y.; Skiadopoulos, D.; Smith, M.; Sun, X.; Trakhtenberg, E.; Xiao, A.; Zholents, A.; Gluskin, E.

2017-10-01

Development of superconducting undulators continues at the Advanced Photon Source (APS). Two years after successful installation and commissioning of the first relatively short superconducting undulator "SCU0" in Sector 6 of the APS storage ring, the second 1.1-m-long superconducting undulator "SCU1" was installed in Sector 1 of the APS. The device has been in user operation since its commissioning in May 2015. This paper describes the magnetic and cryogenic design of the SCU1 together with the results of stand-alone cold tests. The SCU1's magnetic and cryogenic performance as well as its operating experience in the APS storage ring are also presented.

Progress on the superconducting undulator for ANKA and on the instrumentation for R and D

DOE Office of Scientific and Technical Information (OSTI.GOV)

Casalbuoni, Sara; Baumbach, Tilo; Grau, Andreas

2010-06-23

Superconducting undulators show a larger magnetic field strength for the same gap and period length, as compared to permanent magnet devices, which allows to generate X-ray beams of higher brilliance and with harder spectrum. The worldwide first short period length superconducting undulator is in operation since 2005 at the synchrotron light source ANKA in Karlsruhe [1]. To further drive the development in this field a research and development program is being carried out. In this contribution we report on the last progress of the construction of a 1.5 m long superconducting undulator with a period length of 15 mm, plannedmore » to be installed in ANKA beginning 2010 to be the light source of the new beamline NANO for high resolution X-ray scattering. The key specifications of the system are an undulator parameter K higher than 2 (with a magnetic gap of 5 mm) and a phase error smaller than 3.5 degrees. Cryocoolers will keep the coils at 4.2 K for a beam heat load of 4 W. The ongoing R and D includes improvements in understanding of the magnetic field properties and of the beam heat load mechanisms. The tools and instruments under development to fulfill these tasks are also discussed.« less

LCLS X-Ray FEL Output Performance in the Presence of Highly Time-Dependent Undulator Wakefields

DOE Office of Scientific and Technical Information (OSTI.GOV)

Fawley, W.M.; /LBL, Berkeley; Bane, K.L.F.

Energy loss due to wakefields within a long undulator, if not compensated by an appropriate tapering of the magnetic field strength, can degrade the FEL process by detuning the resonant FEL frequency. The wakefields arise from the vacuum chamber wall resistivity, its surface roughness, and abrupt changes in its aperture. For LCLS parameters, the resistive-wall component is the most critical and depends upon the chamber material (e.g., Cu) and its radius. Of recent interest[1] is the so-called ''AC'' component of the resistive-wall wake which can lead to strong variations on very short timescales (e.g., {approx} 20 fs). To study themore » expected performance of the LCLS in the presence of these wakefields, we have made an extensive series of start-to-end SASE simulations with tracking codes PARMELA and ELEGANT, and time-dependent FEL simulation codes GENESIS1.3 and GINGER. We discuss the impact of the wakefield losses upon output energy, spectral bandwidth, and temporal envelope of the output FEL pulse, as well as the benefits of a partial compensation of the time-dependent wake losses obtained with a slight z-dependent taper in the undulator field. We compare the taper results to those predicted analytically[2].« less

LCLS X-Ray FEL Output Performance in the Presence of HighlyTime-Dependent Undulator Wakefields

DOE Office of Scientific and Technical Information (OSTI.GOV)

Bane, Karl L.F.; Emma, Paul; Huang, Heinz-Dieter Nuhn

Energy loss due to wakefields within a long undulator, if not compensated by an appropriate tapering of the magnetic field strength, can degrade the FEL process by detuning the resonant FEL frequency. The wakefields arise from the vacuum chamber wall resistivity, its surface roughness, and abrupt changes in its aperture. For LCLS parameters, the resistive-wall component is the most critical and depends upon the chamber material (e.g., Cu) and its radius. Of recent interest[1] is the so-called ''AC'' component of the resistive-wall wake which can lead to strong variations on very short timescales (e.g., {approx} 20 0fs). To study themore » expected performance of the LCLS in the presence of these wakefields, we have made an extensive series of start-to-end SASE simulations with tracking codes PARMELA and ELEGANT, and time-dependent FEL simulation codes GENESIS1.3 and GINGER. We discuss the impact of the wakefield losses upon output energy, spectral bandwidth, and temporal envelope of the output FEL pulse, as well as the benefits of a partial compensation of the time-dependent wake losses obtained with a slight z-dependent taper in the undulator field. We compare the taper results to those predicted analytically[2].« less

Thermal Modeling and Cryogenic Design of a Helical Superconducting Undulator Cryostat

DOE Office of Scientific and Technical Information (OSTI.GOV)

Shiroyanagi, Y.; Fuerst, J.; Hasse, Q.

A conceptual design for a helical superconducting undulator (HSCU) for the Advanced Photon Source (APS) at Argonne National Laboratory (ANL) has been completed. The device differs sufficiently from the existing APS planar superconducting undulator (SCU) design to warrant development of a new cryostat based on value engineering and lessons learned from the existing planar SCU. Changes include optimization of the existing cryocooler-based refrigeration system and thermal shield as well as cost reduction through the use of standard vacuum hardware. The end result is a design that provides significantly larger 4.2 K refrigeration margin in a smaller package for greater installationmore » flexibility in the APS storage ring. This paper presents ANSYS-based thermal analysis of the cryostat, including estimated static and dynamic« less

FEL (free-electron lasers) undulator technology and synchrotron radiation source requirements

DOE Office of Scientific and Technical Information (OSTI.GOV)

Robinson, K.; Quimby, D.; Slater, J.

This paper describes design and construction considerations of the THUNDER undulator, for use in free-electron laser experiments at visible wavelengths. For the parameters of these experiments, an unusually high degree of optimization of the electron-photon interaction is required and, as a result, THUNDER is built to especially high mechanical and magnetic precision. Except for its narrow magnet gap, the 5-meter THUNDER undulator is quite similar to insertion devices under consideration for the proposed 6-GeV storage ring. The engineering and physics approach adopted for this FEL modulator design is directly applicable to insertion device development. The tolerance limits to THUNDER, establishedmore » by modeling and design and achieved through careful control of mechanical and magnetic errors, are essential to the next generation of insertion devices.« less

Development and operating experience of a 1.1-m-long superconducting undulator at the Advanced Photon Source

DOE PAGES

Ivanyushenkov, Y.; Harkay, K.; Borland, M.; ...

2017-10-03

Development of superconducting undulators continues at the Advanced Photon Source (APS). Two years after successful installation and commissioning of the first relatively short superconducting undulator “SCU0” in Sector 6 of the APS storage ring, the second 1.1-m long superconducting undulator “SCU1” was installed in Sector 1 of the APS. The device has been in user operation since its commissioning in May 2015. This paper describes the magnetic and cryogenic design of the SCU1 together with the results of stand-alone cold tests. The SCU1’s magnetic and cryogenic performance as well as its operating experience in the APS storage ring are alsomore » presented.« less

Development and operating experience of a 1.1-m-long superconducting undulator at the Advanced Photon Source

DOE Office of Scientific and Technical Information (OSTI.GOV)

Ivanyushenkov, Y.; Harkay, K.; Borland, M.

Development of superconducting undulators continues at the Advanced Photon Source (APS). Two years after successful installation and commissioning of the first relatively short superconducting undulator “SCU0” in Sector 6 of the APS storage ring, the second 1.1-m long superconducting undulator “SCU1” was installed in Sector 1 of the APS. The device has been in user operation since its commissioning in May 2015. This paper describes the magnetic and cryogenic design of the SCU1 together with the results of stand-alone cold tests. The SCU1’s magnetic and cryogenic performance as well as its operating experience in the APS storage ring are alsomore » presented.« less

High Efficiency Energy Extraction from a Relativistic Electron Beam in a Strongly Tapered Undulator

DOE PAGES

Sudar, N.; Musumeci, P.; Duris, J.; ...

2016-10-19

Here we present results of an experiment where, using a 200 GW CO 2 laser seed, a 65 MeV electron beam was decelerated down to 35 MeV in a 54-cm-long strongly tapered helical magnetic undulator, extracting over 30% of the initial electron beam energy to coherent radiation. These results, supported by simulations of the radiation field evolution, demonstrate unparalleled electro-optical conversion efficiencies for a relativistic beam in an undulator field and represent an important step in the development of high peak and average power coherent radiation sources.

Advantage and Challenges of $$Nb_3Sn$$ Superconducting Undulators

DOE Office of Scientific and Technical Information (OSTI.GOV)

Zlobin, A. V.; Barzi, E.; Turrinoni, D.

Utilization of Nb3Sn superconducting wires offers the possibility to increase undulators’ nominal operation field and temperature margin, but requires overcoming chal-lenges that are described in this paper. The achievable field levels for a Nb3Sn version of superconducting undulators being developed at APS-ANL and the conductor choice are also presented and discussed.

Global accuracy estimates of point and mean undulation differences obtained from gravity disturbances, gravity anomalies and potential coefficients

NASA Technical Reports Server (NTRS)

Jekeli, C.

1979-01-01

Through the method of truncation functions, the oceanic geoid undulation is divided into two constituents: an inner zone contribution expressed as an integral of surface gravity disturbances over a spherical cap; and an outer zone contribution derived from a finite set of potential harmonic coefficients. Global, average error estimates are formulated for undulation differences, thereby providing accuracies for a relative geoid. The error analysis focuses on the outer zone contribution for which the potential coefficient errors are modeled. The method of computing undulations based on gravity disturbance data for the inner zone is compared to the similar, conventional method which presupposes gravity anomaly data within this zone.

Double emittance exchanger as a bunch compressor for the MaRIE XFEL electron beam line at 1 GeV

NASA Astrophysics Data System (ADS)

Malyzhenkov, Alexander; Carlsten, Bruce E.; Yampolsky, Nikolai A.

2017-03-01

We demonstrate an alternative realization of a bunch compressor (specifically, the second bunch compressor for the MaRIE XFEL beamline, 1GeV electron energy) using a double emittance exchanger (EEX) and a telescope in the transverse phase space. We compare our results with a traditional bunch compressor realized via a chicane, taking into account the nonlinear dynamics, Coherent Synchrotron Radiation (CSR) and Space Charge (SC) effects. In particular, we use the Elegant code for tracking particles through the beamline, and analyze the evolution of the eigen-emittances to separate the influence of the CSR/SC effects from the nonlinear dynamics effects. We optimize the scheme parameters to reach a desirable compression factor and minimize the emittance growth. We observe dominant CSR effects in our scheme, resulting in critical emittance growth, and introduce an alternative version of an emittance exchanger with a reduced number of bending magnets to minimize the impact of CSR effects.

Double Emittance Exchanger as a Bunch Compressor for the MaRIE XFEL electron beam line at 1GeV

DOE Office of Scientific and Technical Information (OSTI.GOV)

Malyzhenkov, Alexander; Yampolsky, Nikolai; Carlsten, Bruce Eric

We demonstrate an alternative realization of a bunch compressor (specifically the second bunch compressor for the MaRIE XFEL beamline, 1GeV electron energy) using a double emittance exchanger (EEX) and a telescope in the transverse phase space.We compare our results with a traditional bunch compressor realized via chicane, taking into account the nonlinear dynamics, Coherent Synchrotron Radiation (CSR) and Space Charge (SC) effects. In particular, we use the Elegant code for tracking particles through the beam line and analyze the eigen-emittances evolution to separate the influence of the CSR/SC effects from the nonlinear dynamics effects. We optimize the scheme parameters tomore » reach a desirable compression factor and minimize the emittance growth. We observe dominant CSR-effects in our scheme resulting in critical emittance growth and introduce alternative version of an emittance exchanger with a reduced number of bending magnets to minimize the impact of CSR effects.« less

New beamline optics of the x-ray undulator BW1 at DORIS

DOE Office of Scientific and Technical Information (OSTI.GOV)

Hahn, U.; Frahm, R.; Guertler, P.

1996-12-31

The X-ray undulator BW1 at the storage ring DORIS is a high brightness source for the spectral range from 2 to 20 keV. The undulator beam is used by three experiments with different distances to the source. The new optical elements allow the adaptation of the focal lengths to the needs of the experimental set-ups. The optical concept consists of a premirror with different optical surfaces, a double crystal monochromator and a focusing second mirror. Sagittal focusing is achieved either by using the cylindrical part of the premirror or by a bend crystal for a monochromatic beam, meridional focusing ismore » done with a pneumatic driven mirror bender for the second mirror.« less

Development of a single-shot CCD-based data acquisition system for time-resolved X-ray photoelectron spectroscopy at an X-ray free-electron laser facility

PubMed Central

Oura, Masaki; Wagai, Tatsuya; Chainani, Ashish; Miyawaki, Jun; Sato, Hiromi; Matsunami, Masaharu; Eguchi, Ritsuko; Kiss, Takayuki; Yamaguchi, Takashi; Nakatani, Yasuhiro; Togashi, Tadashi; Katayama, Tetsuo; Ogawa, Kanade; Yabashi, Makina; Tanaka, Yoshihito; Kohmura, Yoshiki; Tamasaku, Kenji; Shin, Shik; Ishikawa, Tetsuya

2014-01-01

In order to utilize high-brilliance photon sources, such as X-ray free-electron lasers (XFELs), for advanced time-resolved photoelectron spectroscopy (TR-PES), a single-shot CCD-based data acquisition system combined with a high-resolution hemispherical electron energy analyzer has been developed. The system’s design enables it to be controlled by an external trigger signal for single-shot pump–probe-type TR-PES. The basic performance of the system is demonstrated with an offline test, followed by online core-level photoelectron and Auger electron spectroscopy in ‘single-shot image’, ‘shot-to-shot image (image-to-image storage or block storage)’ and ‘shot-to-shot sweep’ modes at soft X-ray undulator beamline BL17SU of SPring-8. In the offline test the typical repetition rate for image-to-image storage mode has been confirmed to be about 15 Hz using a conventional pulse-generator. The function for correcting the shot-to-shot intensity fluctuations of the exciting photon beam, an important requirement for the TR-PES experiments at FEL sources, has been successfully tested at BL17SU by measuring Au 4f photoelectrons with intentionally controlled photon flux. The system has also been applied to hard X-ray PES (HAXPES) in ‘ordinary sweep’ mode as well as shot-to-shot image mode at the 27 m-long undulator beamline BL19LXU of SPring-8 and also at the SACLA XFEL facility. The XFEL-induced Ti 1s core-level spectrum of La-doped SrTiO3 is reported as a function of incident power density. The Ti 1s core-level spectrum obtained at low power density is consistent with the spectrum obtained using the synchrotron source. At high power densities the Ti 1s core-level spectra show space-charge effects which are analysed using a known mean-field model for ultrafast electron packet propagation. The results successfully confirm the capability of the present data acquisition system for carrying out the core-level HAXPES studies of condensed matter induced by the

3D theory of a high-gain free-electron laser based on a transverse gradient undulator

NASA Astrophysics Data System (ADS)

Baxevanis, Panagiotis; Ding, Yuantao; Huang, Zhirong; Ruth, Ronald

2014-02-01

The performance of a free-electron laser (FEL) depends significantly on the various parameters of the driving electron beam. In particular, a large energy spread in the beam results in a substantial reduction of the FEL gain, an effect which is especially relevant when one considers FELs driven by plasma accelerators or ultimate storage rings. For such cases, one possible solution is to use a transverse gradient undulator (TGU). In this concept, the energy spread problem is mitigated by properly dispersing the electron beam and introducing a linear, transverse field dependence in the undulator. This paper presents a self-consistent theoretical analysis of a TGU-based, high-gain FEL which takes into account three-dimensional (3D) effects, including beam size variations along the undulator. The results of our theory compare favorably with simulation and are used in fast optimization studies of various x-ray FEL configurations.

Development and operation of a Pr2 Fe14 B based cryogenic permanent magnet undulator for a high spatial resolution x-ray beam line

NASA Astrophysics Data System (ADS)

Benabderrahmane, C.; Valléau, M.; Ghaith, A.; Berteaud, P.; Chapuis, L.; Marteau, F.; Briquez, F.; Marcouillé, O.; Marlats, J.-L.; Tavakoli, K.; Mary, A.; Zerbib, D.; Lestrade, A.; Louvet, M.; Brunelle, P.; Medjoubi, K.; Herbeaux, C.; Béchu, N.; Rommeluere, P.; Somogyi, A.; Chubar, O.; Kitegi, C.; Couprie, M.-E.

2017-03-01

Short period, high field undulators are used to produce hard x-rays on synchrotron radiation based storage ring facilities of intermediate energy and enable short wavelength free electron laser. Cryogenic permanent magnet undulators take benefit from improved magnetic properties of RE2 Fe14B (Rare Earth based magnets) at low temperatures for achieving short period, high magnetic field and high coercivity. Using Pr2 Fe14B instead of Nd2 Fe14B , which is generally employed for undulators, avoids the limitation caused by the spin reorientation transition phenomenon, and simplifies the cooling system by allowing the working temperature of the undulator to be directly at the liquid nitrogen one (77 K). We describe here the development of a full scale (2 m), 18 mm period Pr2 Fe14B cryogenic permanent magnet undulator (U18). The design, construction and optimization, as well as magnetic measurements and shimming at low temperature are presented. The commissioning and operation of the undulator with the electron beam and spectrum measurement using the Nanoscopmium beamline at SOLEIL are also reported.

Undulator-Based Laser Wakefield Accelerator Electron Beam Energy Spread and Emittance Diagnostic

DOE Office of Scientific and Technical Information (OSTI.GOV)

Bakeman, M. S.; University of Nevada Reno, Reno, NV 89557; Van Tilborg, J.

The design and current status of experiments to couple the Tapered Hybrid Undulator (THUNDER) to the Lawrence Berkeley National Laboratory (LBNL) laser plasma accelerator (LPA) to measure electron beam energy spread and emittance are presented.

Brightness analysis of an electron beam with a complex profile

NASA Astrophysics Data System (ADS)

Maesaka, Hirokazu; Hara, Toru; Togawa, Kazuaki; Inagaki, Takahiro; Tanaka, Hitoshi

2018-05-01

We propose a novel analysis method to obtain the core bright part of an electron beam with a complex phase-space profile. This method is beneficial to evaluate the performance of simulation data of a linear accelerator (linac), such as an x-ray free electron laser (XFEL) machine, since the phase-space distribution of a linac electron beam is not simple, compared to a Gaussian beam in a synchrotron. In this analysis, the brightness of undulator radiation is calculated and the core of an electron beam is determined by maximizing the brightness. We successfully extracted core electrons from a complex beam profile of XFEL simulation data, which was not expressed by a set of slice parameters. FEL simulations showed that the FEL intensity was well remained even after extracting the core part. Consequently, the FEL performance can be estimated by this analysis without time-consuming FEL simulations.

Compact representations of partially coherent undulator radiation suitable for wave propagation

DOE PAGES

Lindberg, Ryan R.; Kim, Kwang -Je

2015-09-28

Undulator radiation is partially coherent in the transverse plane, with the degree of coherence depending on the ratio of the electron beam phase space area (emittance) to the characteristic radiation wavelength λ. Numerical codes used to predict x-ray beam line performance can typically only propagate coherent fields from the source to the image plane. We investigate methods for representing partially coherent undulator radiation using a suitably chosen set of coherent fields that can be used in standard wave propagation codes, and discuss such “coherent mode expansions” for arbitrary degrees of coherence. In the limit when the electron beam emittance alongmore » at least one direction is much larger than λ the coherent modes are orthogonal and therefore compact; when the emittance approaches λ in both planes we discuss an economical method of defining the relevant coherent fields that samples the electron beam phase space using low-discrepancy sequences.« less

Undulations on the surface of elongated bubbles in confined gas-liquid flows

NASA Astrophysics Data System (ADS)

Magnini, M.; Ferrari, A.; Thome, J. R.; Stone, H. A.

2017-08-01

A systematic analysis is presented of the undulations appearing on the surface of long bubbles in confined gas-liquid flows. CFD simulations of the flow are performed with a self-improved version of the open-source solver ESI OpenFOAM (release 2.3.1), for Ca =0.002 -0.1 and Re =0.1 -1000 , where Ca =μ U /σ and Re =2 ρ U R /μ , with μ and ρ being, respectively, the viscosity and density of the liquid, σ the surface tension, U the bubble velocity, and R the tube radius. A model, based on an extension of the classical axisymmetric Bretherton theory, accounting for inertia and for the curvature of the tube's wall, is adopted to better understand the CFD results. The thickness of the liquid film, and the wavelength and decay rate of the undulations extracted from the CFD simulations, agree well with those obtained with the theoretical model. Inertial effects appear when the Weber number of the flow We =Ca Re =O (10-1) and are manifest by a larger number of undulation crests that become evident on the surface of the rear meniscus of the bubble. This study demonstrates that the necessary bubble length for a flat liquid film region to exist between the rear and front menisci rapidly increases above 10 R when Ca >0.01 and the value of the Reynolds number approaches 1000.

Structure and function of the undulating membrane in spermatozoan propulsion in the toad Bufo marinus

PubMed Central

1980-01-01

Accessory fibers in most sperm surround the axoneme so that their function in propulsion is difficult to assess. In the sperm of the toad Bufo marinus, an accessory fiber is displaced from the axoneme, being connected to it by the thin undulating membrane in such a way that the movement of axoneme and accessory fiber can be viewed independently. The axoneme is highly convoluted in whole mounts, and the axial fiber is straight. Cinemicrographic analysis shows that it is the longer, flexuous fiber, the presumed axoneme, that move actively. The accessory fiber follows it passively with a lower amplitude of movement. The accessory fiber does not move independent of the axoneme, even after demembranation and reactivation of the sperm. On the basis of anatomical relations in the neck region, it appears that the accessory fibers of amphibians are analogous to the dense fibers of mammalian sperm. SDS polyacrylamide gel electrophoresis of demembranated toad sperm tails reveals two principal proteins in addition to the tubulins, the former probably arising from the accessory fibers and the matrix of the undulating membrane. The function of displacing an accessory fiber into an undulating membrane may be to provide stiffness for the tail without incurring an energy deficit large enough to require a long middle piece. A long middle piece is not present in toad sperm, in contrast to those sperm that have accessory fibers around the axoneme. However, the toad sperm suffers a reduction in speed of about one- third, compared with the speed expected for a sperm without an undulating membrane. PMID:6771299

Development and operation of a Pr 2 Fe 14 B based cryogenic permanent magnet undulator for a high spatial resolution x-ray beam line

DOE PAGES

Benabderrahmane, C.; Valleau, M.; Ghaith, A.; ...

2017-03-02

Short period, high field undulators are used to produce hard x-rays on synchrotron radiation based storage ring facilities of intermediate energy and enable short wavelength free electron laser. Cryogenic permanent magnet undulators take benefit from improved magnetic properties of RE 2Fe 14B (Rare Earth based magnets) at low temperatures for achieving short period, high magnetic field and high coercivity. Using Pr 2Fe 14B instead of Nd 2Fe 14B, which is generally employed for undulators, avoids the limitation caused by the spin reorientation transition phenomenon, and simplifies the cooling system by allowing the working temperature of the undulator to be directlymore » at the liquid nitrogen one (77 K). We describe here the development of a full scale (2 m), 18 mm period Pr 2Fe 14B cryogenic permanent magnet undulator (U18). The design, construction and optimization, as well as magnetic measurements and shimming at low temperature are presented. In conclusion, the commissioning and operation of the undulator with the electron beam and spectrum measurement using the Nanoscopmium beamline at SOLEIL are also reported.« less

Development and operation of a Pr 2 Fe 14 B based cryogenic permanent magnet undulator for a high spatial resolution x-ray beam line

DOE Office of Scientific and Technical Information (OSTI.GOV)

Benabderrahmane, C.; Valleau, M.; Ghaith, A.

Short period, high field undulators are used to produce hard x-rays on synchrotron radiation based storage ring facilities of intermediate energy and enable short wavelength free electron laser. Cryogenic permanent magnet undulators take benefit from improved magnetic properties of RE 2Fe 14B (Rare Earth based magnets) at low temperatures for achieving short period, high magnetic field and high coercivity. Using Pr 2Fe 14B instead of Nd 2Fe 14B, which is generally employed for undulators, avoids the limitation caused by the spin reorientation transition phenomenon, and simplifies the cooling system by allowing the working temperature of the undulator to be directlymore » at the liquid nitrogen one (77 K). We describe here the development of a full scale (2 m), 18 mm period Pr 2Fe 14B cryogenic permanent magnet undulator (U18). The design, construction and optimization, as well as magnetic measurements and shimming at low temperature are presented. In conclusion, the commissioning and operation of the undulator with the electron beam and spectrum measurement using the Nanoscopmium beamline at SOLEIL are also reported.« less

Development and operating experience of a short-period superconducting undulator at the Advanced Photon Source

DOE PAGES

Ivanyushenkov, Y.; Harkay, K.; Abliz, M.; ...

2015-04-01

In this study, a decade-long effort at the Advanced Photon Source (APS) of Argonne National Laboratory (ANL) on development of superconducting undulators culminated in December 2012 with the installation of the first superconducting undulator “SCU0” into Sector 6 of the APS storage ring. The device was commissioned in January 2013 and has been in user operation since. This paper presents the magnetic and cryogenic design of the SCU0 together with the results of stand-alone cold tests. The initial commissioning and characterization of SCU0 as well as its operating experience in the APS storage ring are described.

Undulating fins produce off-axis thrust and flow structures.

PubMed

Neveln, Izaak D; Bale, Rahul; Bhalla, Amneet Pal Singh; Curet, Oscar M; Patankar, Neelesh A; MacIver, Malcolm A

2014-01-15

While wake structures of many forms of swimming and flying are well characterized, the wake generated by a freely swimming undulating fin has not yet been analyzed. These elongated fins allow fish to achieve enhanced agility exemplified by the forward, backward and vertical swimming capabilities of knifefish, and also have potential applications in the design of more maneuverable underwater vehicles. We present the flow structure of an undulating robotic fin model using particle image velocimetry to measure fluid velocity fields in the wake. We supplement the experimental robotic work with high-fidelity computational fluid dynamics, simulating the hydrodynamics of both a virtual fish, whose fin kinematics and fin plus body morphology are measured from a freely swimming knifefish, and a virtual rendering of our robot. Our results indicate that a series of linked vortex tubes is shed off the long edge of the fin as the undulatory wave travels lengthwise along the fin. A jet at an oblique angle to the fin is associated with the successive vortex tubes, propelling the fish forward. The vortex structure bears similarity to the linked vortex ring structure trailing the oscillating caudal fin of a carangiform swimmer, though the vortex rings are distorted because of the undulatory kinematics of the elongated fin.

Harmonic lasing in x-ray free electron lasers

NASA Astrophysics Data System (ADS)

Schneidmiller, E. A.; Yurkov, M. V.

2012-08-01

Harmonic lasing in a free electron laser with a planar undulator (under the condition that the fundamental frequency is suppressed) might be a cheap and efficient way of extension of wavelength ranges of existing and planned x-ray free electron laser (FEL) facilities. Contrary to nonlinear harmonic generation, harmonic lasing can provide much more intense, stable, and narrow-band FEL beam which is easier to handle due to the suppressed fundamental frequency. In this paper we perform a parametrization of the solution of the eigenvalue equation for lasing at odd harmonics, and present an explicit expression for FEL gain length, taking into account all essential effects. We propose and discuss methods for suppression of the fundamental harmonic. We also suggest a combined use of harmonic lasing and lasing at the retuned fundamental wavelength in order to reduce bandwidth and to increase brilliance of x-ray beam at saturation. Considering 3rd harmonic lasing as a practical example, we come to the conclusion that it is much more robust than usually thought, and can be widely used in the existing or planned x-ray FEL (XFEL) facilities. In particular, Linac Coherent Light Source (LCLS) after a minor modification can lase to saturation at the 3rd harmonic up to the photon energy of 25-30 keV providing multigigawatt power level and narrow bandwidth. As for the European XFEL, harmonic lasing would allow one to extend operating range (ultimately up to 100 keV), to reduce FEL bandwidth and to increase brilliance, to enable two-color operation for pump-probe experiments, and to provide more flexible operation at different electron energies. Similar improvements can be realized in other x-ray FEL facilities with gap-tunable undulators like FLASH II, SACLA, LCLS II, etc. Harmonic lasing can be an attractive option for compact x-ray FELs (driven by electron beams with a relatively low energy), allowing the use of the standard undulator technology instead of small-gap in

Refurbishment of a used in-vacuum undulator from the National Synchrotron Light Source for the National Synchrotron Light Source-II ring

DOE PAGES

Tanabe, Toshiya; Bassan, Harmanpreet; Broadbent, Andrew; ...

2017-08-01

The National Synchrotron Light Source (NSLS) ceased operation in September 2014 and was succeeded by NSLS-II. There were four in-vacuum undulators (IVUs) in operation at NSLS. The most recently constructed IVU for NSLS was the mini-gap undulator (MGU-X25, to be renamed IVU18 for NSLS-II), which was constructed in 2006. This device was selected to be reused for the New York Structural Biology Consortium Microdiffraction beamline at NSLS-II. At the time of construction, IVU18 was a state-of-the-art undulator designed to be operated as a cryogenic permanent-magnet undulator. Due to the more stringent field quality and impedance requirements of the NSLS-II ring,more » the transition region was redesigned. The control system was also updated to NSLS-II specifications. As a result, this paper reports the details of the IVU18 refurbishment activities including additional magnetic measurement and tuning.« less

Refurbishment of a used in-vacuum undulator from the National Synchrotron Light Source for the National Synchrotron Light Source-II ring

DOE Office of Scientific and Technical Information (OSTI.GOV)

Tanabe, Toshiya; Bassan, Harmanpreet; Broadbent, Andrew

The National Synchrotron Light Source (NSLS) ceased operation in September 2014 and was succeeded by NSLS-II. There were four in-vacuum undulators (IVUs) in operation at NSLS. The most recently constructed IVU for NSLS was the mini-gap undulator (MGU-X25, to be renamed IVU18 for NSLS-II), which was constructed in 2006. This device was selected to be reused for the New York Structural Biology Consortium Microdiffraction beamline at NSLS-II. At the time of construction, IVU18 was a state-of-the-art undulator designed to be operated as a cryogenic permanent-magnet undulator. Due to the more stringent field quality and impedance requirements of the NSLS-II ring,more » the transition region was redesigned. The control system was also updated to NSLS-II specifications. As a result, this paper reports the details of the IVU18 refurbishment activities including additional magnetic measurement and tuning.« less

Surface-potential undulation of Alq3 thin films prepared on ITO, Au, and n-Si.

PubMed

Ozasa, Kazunari; Ito, Hiromi; Maeda, Mizuo; Hara, Masahiko

2012-01-01

The surface potential (SP) morphology on thin films of tris(8-hydroxyquinolinato) aluminum (Alq3) was investigated with Kelvin probe force microscopy. Thin Alq3 films of 100 nm were prepared on ITO/glass substrates, Au/mica substrates, and n-Si substrates. Cloud-like morphologies of the SP undulation with 200-400 nm in lateral size were observed for all three types of the substrates. New larger peaks were observed in the cloud-like morphologies when the surfaces were exposed shortly to a light, while the SP average was reduced monotonically. The nonuniform distribution of charged traps and mobility was deduced from the SP undulation morphology and its photoexposure dependences.

X-ray absorption spectroscopy using a self-seeded soft X-ray free-electron laser

DOE PAGES

Kroll, Thomas; Kern, Jan; Kubin, Markus; ...

2016-09-19

X-ray free electron lasers (XFELs) enable unprecedented new ways to study the electronic structure and dynamics of transition metal systems. L-edge absorption spectroscopy is a powerful technique for such studies and the feasibility of this method at XFELs for solutions and solids has been demonstrated. But, the required x-ray bandwidth is an order of magnitude narrower than that of self-amplified spontaneous emission (SASE), and additional monochromatization is needed. We compare L-edge x-ray absorption spectroscopy (XAS) of a prototypical transition metal system based on monochromatizing the SASE radiation of the linac coherent light source (LCLS) with a new technique based onmore » self-seeding of LCLS. We demonstrate how L-edge XAS can be performed using the self-seeding scheme without the need of an additional beam line monochromator. Lastly, we show how the spectral shape and pulse energy depend on the undulator setup and how this affects the x-ray spectroscopy measurements.« less

X-ray absorption spectroscopy using a self-seeded soft X-ray free-electron laser

PubMed Central

Kroll, Thomas; Kern, Jan; Kubin, Markus; Ratner, Daniel; Gul, Sheraz; Fuller, Franklin D.; Löchel, Heike; Krzywinski, Jacek; Lutman, Alberto; Ding, Yuantao; Dakovski, Georgi L.; Moeller, Stefan; Turner, Joshua J.; Alonso-Mori, Roberto; Nordlund, Dennis L.; Rehanek, Jens; Weniger, Christian; Firsov, Alexander; Brzhezinskaya, Maria; Chatterjee, Ruchira; Lassalle-Kaiser, Benedikt; Sierra, Raymond G.; Laksmono, Hartawan; Hill, Ethan; Borovik, Andrew; Erko, Alexei; Föhlisch, Alexander; Mitzner, Rolf; Yachandra, Vittal K.; Yano, Junko; Wernet, Philippe; Bergmann, Uwe

2016-01-01

X-ray free electron lasers (XFELs) enable unprecedented new ways to study the electronic structure and dynamics of transition metal systems. L-edge absorption spectroscopy is a powerful technique for such studies and the feasibility of this method at XFELs for solutions and solids has been demonstrated. However, the required x-ray bandwidth is an order of magnitude narrower than that of self-amplified spontaneous emission (SASE), and additional monochromatization is needed. Here we compare L-edge x-ray absorption spectroscopy (XAS) of a prototypical transition metal system based on monochromatizing the SASE radiation of the linac coherent light source (LCLS) with a new technique based on self-seeding of LCLS. We demonstrate how L-edge XAS can be performed using the self-seeding scheme without the need of an additional beam line monochromator. We show how the spectral shape and pulse energy depend on the undulator setup and how this affects the x-ray spectroscopy measurements. PMID:27828320

Volumetric PIV of multiple free-swimming maneuvers generated by the KnifeBot: a biomimetic vessel propelled by an undulating fin

NASA Astrophysics Data System (ADS)

Liu, Hanlin; Troolin, Daniel; Hortensius, Ruben; Pothos, Stamatios; Curet, Oscar

2017-11-01

An undulating fin represents a remarkable propulsion model for underwater vehicles due to its high propulsive efficiency and considerable locomotor capabilities. In this work, we used a bio-inspired vessel, the KnifeBot to demonstrate the maneuverability of undulating fin propulsion, including forward-backward swimming, station keeping and vertical swimming. This self-contained robotic system uses an undulating ventral fin as the propulsor and features a slender 3D-printed hull with 16 motors, 2 batteries and electronic boards encapsulated inside. We tested the robot in a water-filled tank and used volumetric particle image velocimetry (V3V PIV) to investigate the three-dimensional flow features and vortex structures generated by the undulating ribbon fin in free-swimming maneuvers. Our results indicate that in the forward swimming, a series of vortex tubes are shed off the fin edge. A streamwise jet at an oblique angle to the fin is generated in association with the vortex tubes propelling the robot forward as well as pitching it up. For the hovering maneuver with inward counter-propagating waves. The streamlines develop vertically downward with the tip vortex shed from the fin edge. This downward jet provides substantial heave force for the robot to swim upward or perform station keeping. Our findings will be useful for understanding the mechanical basis of undulating fin propulsion and facilitate the development of bio-inspired vehicles using undulatory propellers. Office of Naval Research under Award Number N00014-16-1-2505.

A Model-Based Fast Protection System for High-Power RF Tube Amplifiers Used at the European XFEL Accelerator

NASA Astrophysics Data System (ADS)

Butkowski, Łukasz; Vogel, Vladimir; Schlarb, Holger; Szabatin, Jerzy

2017-06-01

The driving engine of the superconducting accelerator of the European X-ray free electron laser (XFEL) is a set of 27 radio frequency (RF) stations. Each of the underground RF stations consists of a multibeam horizontal klystron that can provide up to 10 MW of power at 1.3 GHz. Klystrons are sensitive devices with a limited lifetime and a high mean time between failures. In real operation, the lifetime of the tube can be significantly reduced because of failures. The special fast protection klystron lifetime management (KLM) system has been developed to minimize the influence of service conditions on the lifetime of klystrons. The main task of this system is to detect all events which can destroy the tube as quickly as possible, and switch off the driving RF signal or the high voltage. Detection of events is based on a comparison of the value of the real signal obtained at the system output with the value estimated on the basis of a high-power RF amplifier model and input signals. The KLM system has been realized in field-programmable gate array (FPGA) and implemented in XFEL. Implementation is based on the standard low-level RF micro telecommunications computing architecture (MTCA.4 or xTCA). The main part of the paper focuses on an estimation of the klystron model and the implementation of KLM in FPGA. The results of the performance of the KLM system will also be presented.

Surface-micromachined magnetic undulator with period length between 10μm and 1 mm for advanced light sources

NASA Astrophysics Data System (ADS)

Harrison, Jere; Joshi, Abhijeet; Lake, Jonathan; Candler, Rob; Musumeci, Pietro

2012-07-01

A technological gap exists between the μm-scale wiggling periods achieved using electromagnetic waves of high intensity laser pulses and the mm scale of permanent-magnet and superconducting undulators. In the sub-mm range, surface-micromachined soft-magnetic micro-electro-mechanical system inductors with integrated solenoidal coils have already experimentally demonstrated 100 to 500 mT field amplitude across air gaps as large as 15μm. Simulations indicate that magnetic fields as large as 1.5 T across 50μm inductor gaps are feasible. A simple rearranging of the yoke and pole geometry allows for fabrication of 10+ cm long undulator structures with period lengths between 12.5μm and 1 mm. Such undulators find application both in high average power spontaneous emission sources and, if used in combination with ultrahigh-brightness electron beams, could lead to the realization of low energy compact free-electron lasers. Challenges include electron energy broadening due to wakefields and Joule heating in the electromagnet.

Modelling local GPS/levelling geoid undulations using artificial neural networks

NASA Astrophysics Data System (ADS)

Kavzoglu, T.; Saka, M. H.

2005-04-01

The use of GPS for establishing height control in an area where levelling data are available can involve the so-called GPS/levelling technique. Modelling of the GPS/levelling geoid undulations has usually been carried out using polynomial surface fitting, least-squares collocation (LSC) and finite-element methods. Artificial neural networks (ANNs) have recently been used for many investigations, and proven to be effective in solving complex problems represented by noisy and missing data. In this study, a feed-forward ANN structure, learning the characteristics of the training data through the back-propagation algorithm, is employed to model the local GPS/levelling geoid surface. The GPS/levelling geoid undulations for Istanbul, Turkey, were estimated from GPS and precise levelling measurements obtained during a field study in the period 1998-99. The results are compared to those produced by two well-known conventional methods, namely polynomial fitting and LSC, in terms of root mean square error (RMSE) that ranged from 3.97 to 5.73 cm. The results show that ANNs can produce results that are comparable to polynomial fitting and LSC. The main advantage of the ANN-based surfaces seems to be the low deviations from the GPS/levelling data surface, which is particularly important for distorted levelling networks.

Algorithms to automate gap-dependent integral tuning for the 2.8-meter long horizontal field undulator with a dynamic force compensation mechanism

DOE Office of Scientific and Technical Information (OSTI.GOV)

Xu, Joseph Z., E-mail: x@anl.gov; Vasserman, Isaac; Strelnikov, Nikita

2016-07-27

A 2.8-meter long horizontal field prototype undulator with a dynamic force compensation mechanism has been developed and tested at the Advanced Photon Source (APS) at Argonne National Laboratory (Argonne). The magnetic tuning of the undulator integrals has been automated and accomplished by applying magnetic shims. A detailed description of the algorithms and performance is reported.

Thermal Analysis of the European XFEL Intersection Control Rack

NASA Astrophysics Data System (ADS)

Concha, P.; Vazquez, C.

2014-04-01

The three undulator segments of the European X-ray Free Electron Laser contain a total of 88 intersections cells. Each intersection accommodates a quadrupole magnet on top of a high precision X-Y positioning table, a beam position monitor, four air coil correctors and a phase shifter. The Intersection Control Rack is an electrical cabinet containing the necessary electronics to control both the quadrupole and the phase shifter movements (which are stepper motor based) with a repeatability of less than 1 um and 10 um, respectively. Four different cabinets have been extensively tested to ensure that they meet specifications. These tests include a thermal analysis to study position measurements dependence on the temperature. This paper introduces a description of the thermal issue, analyses the causes and consequences of heating, presents the results of the different tests performed, and concludes the best design and operating conditions to achieve a good performance.

Characterization and long term operation of a novel superconducting undulator with 15 mm period length in a synchrotron light source

NASA Astrophysics Data System (ADS)

Casalbuoni, S.; Cecilia, A.; Gerstl, S.; Glamann, N.; Grau, A. W.; Holubek, T.; Meuter, C.; de Jauregui, D. Saez; Voutta, R.; Boffo, C.; Gerhard, Th.; Turenne, M.; Walter, W.

2016-11-01

A new cryogen-free full scale (1.5 m long) superconducting undulator with a period length of 15 mm (SCU15) has been successfully tested in the ANKA storage ring. This represents a very important milestone in the development of superconducting undulators for third and fourth generation light sources carried on by the collaboration between the Karlsruhe Institute of Technology and the industrial partner Babcock Noell GmbH. SCU15 is the first full length device worldwide that with beam reaches a higher peak field than what expected with the same geometry (vacuum gap and period length) with an ideal cryogenic permanent magnet undulator built with the best material available PrFeB. After a summary on the design and main parameters of the device, we present here the characterization in terms of spectral properties and the long term operation of the SCU15 in the ANKA storage ring.

Laser-plasma accelerator-based single-cycle attosecond undulator source

NASA Astrophysics Data System (ADS)

Tibai, Z.; Tóth, Gy.; Nagyváradi, A.; Sharma, A.; Mechler, M. I.; Fülöp, J. A.; Almási, G.; Hebling, J.

2018-06-01

Laser-plasma accelerators (LPAs), producing high-quality electron beams, provide an opportunity to reduce the size of free-electron lasers (FELs) to only a few meters. A complete system is proposed here, which is based on FEL technology and consists of an LPA, two undulators, and other magnetic devices. The system is capable to generate carrier-envelope phase stable attosecond pulses with engineered waveform. Pulses with up to 60 nJ energy and 90-400 attosecond duration in the 30-120 nm wavelength range are predicted by numerical simulation. These pulses can be used to investigate ultrafast field-driven electron dynamics in matter.

A second-generation superconducting undulator cryostat for the APS

NASA Astrophysics Data System (ADS)

Fuerst, J.; Hasse, Q.; Ivanyushenkov, Y.; Kasa, M.; Shiroyanagi, Y.

2017-12-01

A second-generation cryocooler-based cryostat has been designed and built to support a new helically wound superconducting undulator (SCU) magnet for the Advanced Photon Source (APS) at Argonne National Laboratory (ANL). The design represents an evolution of existing SCU cryostats currently in operation in the APS storage ring. Value engineering and lessons learned have resulted in a smaller, cheaper, and simpler cryostat design compatible with existing planar magnets as well as the new helically wound device. We describe heat load and quench response results, design and operational details, and the “build-to-spec” procurement strategy.

Preparing the BESSY APPLE Undulators for Top-Up Operation

NASA Astrophysics Data System (ADS)

Bahrdt, J.; Frentrup, W.; Gaupp, A.; Scheer, M.

2007-01-01

BESSY plans to go to topping up operation in the near future. A high injection efficiency is essential to avoid particle losses inside the undulator magnets and to ensure a low radiation background in the beamlines. Dynamic and static multipoles of the insertion devices have to be minimized to accomplish this requirement. APPLE II devices show strong dynamic multipoles in the elliptical and vertical polarization mode. Measurements before and after shimming of these multipoles are presented. The static multipoles of the BESSY UE56-2 which are due to systematic block inhomgeneities have successfully been shimmed recovering the full dynamic aperture.

Serial femtosecond crystallography at the SACLA: breakthrough to dynamic structural biology.

PubMed

Mizohata, Eiichi; Nakane, Takanori; Fukuda, Yohta; Nango, Eriko; Iwata, So

2018-04-01

X-ray crystallography visualizes the world at the atomic level. It has been used as the most powerful technique for observing the three-dimensional structures of biological macromolecules and has pioneered structural biology. To determine a crystal structure with high resolution, it was traditionally required to prepare large crystals (> 200 μm). Later, synchrotron radiation facilities, such as SPring-8, that produce powerful X-rays were built. They enabled users to obtain good quality X-ray diffraction images even with smaller crystals (ca. 200-50 μm). In recent years, one of the most important technological innovations in structural biology has been the development of X-ray free electron lasers (XFELs). The SPring-8 Angstrom Compact free electron LAser (SACLA) in Japan generates the XFEL beam by accelerating electrons to relativistic speeds and directing them through in-vacuum, short-period undulators. Since user operation started in 2012, we have been involved in the development of serial femtosecond crystallography (SFX) measurement systems using XFEL at the SACLA. The SACLA generates X-rays a billion times brighter than SPring-8. The extremely bright XFEL pulses enable data collection with microcrystals (ca. 50-1 μm). Although many molecular analysis techniques exist, SFX is the only technique that can visualize radiation-damage-free structures of biological macromolecules at room temperature in atomic resolution and fast time resolution. Here, we review the achievements of the SACLA-SFX Project in the past 5 years. In particular, we focus on: (1) the measurement system for SFX; (2) experimental phasing by SFX; (3) enzyme chemistry based on damage-free room-temperature structures; and (4) molecular movie taken by time-resolved SFX.

Linac Coherent Light Source Undulator RF BPM System

DOE Office of Scientific and Technical Information (OSTI.GOV)

Lill, R.M.; Morrison, L.H.; Waldschmidt, G.J.

2007-04-17

The Linac Coherent Light Source (LCLS) will be the world's first x-ray free-electron laser (FEL) when it becomes operational in 2009. The LCLS is currently in the construction phase. The beam position monitor (BPM) system planned for the LCLS undulator will incorporate a high-resolution X-band cavity BPM system described in this paper. The BPM system will provide high-resolution measurements of the electron beam trajectory on a pulse-to-pulse basis and over many shots. The X-band cavity BPM size, simple fabrication, and high resolution make it an ideal choice for LCLS beam position detection. We will discuss the system specifications, design, andmore » prototype test results.« less

Low-frequency quadrupole impedance of undulators and wigglers

DOE PAGES

Blednykh, A.; Bassi, G.; Hidaka, Y.; ...

2016-10-25

An analytical expression of the low-frequency quadrupole impedance for undulators and wigglers is derived and benchmarked against beam-based impedance measurements done at the 3 GeV NSLS-II storage ring. The adopted theoretical model, valid for an arbitrary number of electromagnetic layers with parallel geometry, allows to calculate the quadrupole impedance for arbitrary values of the magnetic permeability μ r. Here, in the comparison of the analytical results with the measurements for variable magnet gaps, two limit cases of the permeability have been studied: the case of perfect magnets (μ r → ∞), and the case in which the magnets are fullymore » saturated (μ r = 1).« less

Quasiperiodic field-aligned current dynamics associated with auroral undulations during a substorm recovery

NASA Astrophysics Data System (ADS)

Bunescu, C.; Marghitu, O.; Vogt, J.; Constantinescu, D.; Partamies, N.

2017-03-01

A substorm recovery event in the early morning sector is explored by means of ground and spacecraft data. The ground data are provided by stations of the MIRACLE network, in northern Scandinavia and Svalbard, while spacecraft data are observed by the Cluster satellites, toward the end of the recovery phase. Additional information is provided by the Fast Auroral SnapshoT (FAST) satellite, conjugate to Cluster 3 (C3). A prominent signature in the Cluster data is the low-frequency oscillations of the perturbation magnetic field, in the Pc5 range, interpreted in terms of a motion of quasi-stationary mesoscale field-aligned currents (FACs). Ground magnetic pulsations in the Ps6 range suggest that the Cluster observations are the high-altitude counterpart of the drifting auroral undulations, whose features thus can be explored closely. While multiscale minimum variance analysis provides information on the planarity, orientation, and scale of the FAC structures, the conjugate data from FAST and from the ground stations can be used to resolve also the azimuthal motion. A noteworthy feature of this event, revealed by the Cluster observations, is the apparent relaxation of the twisted magnetic flux tubes, from a sequence of 2-D current filaments to an undulated current sheet, on a timescale of about 10 min. This timescale appears to be consistent with the drift mirror instability in the inner magnetosphere, mapping to the equatorward side of the oval, or the Kelvin-Helmholtz instability related to bursty bulk flows farther downtail, mapping to the poleward side of the oval. However, more work is needed and a better event statistics, to confirm these tentative mechanisms as sources of Ω-like auroral undulations during late substorm recovery.

Multicascade X-Ray Free-Electron Laser with Harmonic Multiplier and Two-Frequency Undulator

NASA Astrophysics Data System (ADS)

Zhukovsky, K. V.

2018-06-01

The feasibility of generation of powerful x-ray radiation by a cascade free-electron laser (FEL) with amplification of higher harmonics using a two-frequency undulator is studied. To analyze the FEL operation, a complex phenomenological single-pass FEL model is developed and used. It describes linear and nonlinear generation of harmonics in the FEL with seed laser that takes into account initial electron beam noise and describes all main losses of each harmonic in each FEL cascade. The model is also calibrated against and approved by the experimental FEL data and available results of three-dimensional numerical simulation. The electron beam in the undulator is assumed to be matched and focused, and the dynamics of power in the singlepass FEL with cascade harmonic multipliers is investigated to obtain x-ray laser radiation in the FEL having the shortest length, beam energy, and frequency of the seed laser as low as possible. In this context, the advantages of the two-frequency undulator used for generation of harmonics are demonstrated. The evolution of harmonics in a multicascade FEL with multiplication of harmonics is investigated. The operation of the cascade FEL at the wavelength λ = 1.14 nm, generating 30 MW already on 38 m with the seed laser operating at a wavelength of 11.43 nm corresponding to the maximal reflectivity of the multilayered mirror MoRu/Be coating is investigated. In addition, the operation of the multicascade FEL with accessible seed UVlaser operating at a wavelength of 157 nm (F2 excimer UV-laser) and electron beam with energy of 0.5 GeV is investigated. X-ray radiation simulated in it at the wavelength λ 3.9 nm reaches power of 50 MW already at 27 m, which is by two orders of magnitude shorter than 3.4 km of the x-ray FEL recently put into operation in Europe.

Calibration of Fast Fiber-Optic Beam Loss Monitors for the Advanced Photon Source Storage Ring Superconducting Undulators

DOE Office of Scientific and Technical Information (OSTI.GOV)

Dooling, J.; Harkay, K.; Ivanyushenkov, Y.

2015-01-01

We report on the calibration and use of fast fiber-optic (FO) beam loss monitors (BLMs) in the Advanced Photon Source storage ring (SR). A superconducting undulator prototype (SCU0) has been operating in SR Sector 6 (“ID6”) since the beginning of CY2013, and another undulator SCU1 (a 1.1-m length undulator that is three times the length of SCU0) is scheduled for installation in Sector 1 (“ID1”) in 2015. The SCU0 main coil often quenches during beam dumps. MARS simulations have shown that relatively small beam loss (<1 nC) can lead to temperature excursions sufficient to cause quenchingwhen the SCU0windings are nearmore » critical current. To characterize local beam losses, high-purity fused-silica FO cables were installed in ID6 on the SCU0 chamber transitions and in ID1 where SCU1 will be installed. These BLMs aid in the search for operating modes that protect the SCU structures from beam-loss-induced quenching. In this paper, we describe the BLM calibration process that included deliberate beam dumps at locations of BLMs. We also compare beam dump events where SCU0 did and did not quench.« less

Direct Observation of Ultralow Vertical Emittance using a Vertical Undulator

DOE Office of Scientific and Technical Information (OSTI.GOV)

Wootton, Kent

2015-09-17

In recent work, the first quantitative measurements of electron beam vertical emittance using a vertical undulator were presented, with particular emphasis given to ultralow vertical emittances [K. P. Wootton, et al., Phys. Rev. ST Accel. Beams, 17, 112802 (2014)]. Using this apparatus, a geometric vertical emittance of 0.9 ± 0.3 pm rad has been observed. A critical analysis is given of measurement approaches that were attempted, with particular emphasis on systematic and statistical uncertainties. The method used is explained, compared to other techniques and the applicability of these results to other scenarios discussed.

The radio power reflected from rough and undulating ionospheric surfaces

NASA Astrophysics Data System (ADS)

Whitehead, J. D.; From, W. R.; Smith, L. G.

1984-08-01

It is shown for both rough and undulating surfaces that the mean radio power reflected by the ionosphere averaged over a sufficiently long time is exactly the same as for a smooth flat surface at the same height provided the sounder is equally sensitive for echoes from all directions. When making radio wave absorption measurements under spread conditions the total integrated power over the whole time the direct echoes are being received must be used but the distance attenuation factor must be calculated from the time of arrival of the first echo.

The Advanced Light Source Elliptically Polarizing Undulator

NASA Astrophysics Data System (ADS)

Marks, Steve; Cortopassi, Christopher; Devries, Jan; Hoyer, Egon; Leinbach, Robert; Minamihara, Yoshi; Padmore, Howard; Pipersky, Paul; Plate, Dave; Schlueter, Ross; Young, Anthony

1997-05-01

An elliptically polarizing undulator for the Advanced Light Source has been designed and is currently under construction. The magnetic design is a four quadrant pure permanent magnet structure featuring moveable magnets to correct phase errors and on axis field integrals. The device is designed with a 5.0 cm period and will produce variably polarized light of any ellipticity, including pure circular and linear. The spectral range at 1.9 GeV for typical elliptical polarization with a degree of circular polarization greater than 0.8 will be from 100 eV to 1500 eV, using the third and fifth spectral harmonics. The device will be switchabe between left and right circular modes at a frequency of up to 0.1 Hz. The 1.95 m long overall length will allow two such devices in a single ALS straight sector.

Analysis of baroreflex sensitivity during undulation pump ventricular assist device support.

PubMed

Liu, Hongjian; Shiraishi, Yasuyuki; Zhang, Xiumin; Song, Hojin; Saijo, Yoshifumi; Baba, Atsushi; Yambe, Tomoyuki; Abe, Yusuke; Imachi, Kou

2009-07-01

The aim of this study was to examine the baroreflex sensitivity (BRS), which involves the autonomic nervous system, in a goat with a chronically implanted undulation pump ventricular assist device (UPVAD). The UPVAD involved transforming the rotation of a brushless DC motor into an undulating motion by a disc attached via a special linking mechanism, and a jellyfish valve in the outflow cannula to prevent diastolic backflow. The pump was implanted into the thoracic cavity of a goat by a left thoracotomy, and the inflow and outflow cannulae were sutured to the apex of the left ventricle and to the descending aorta, respectively. The driving cable was wired percutaneously to an external controller. Electrocardiogram and hemodynamic waveforms were recorded at a sampling frequency of 1 kHz. BRS was determined when awake by the slope of the linear regression of R-R interval against mean arterial pressure changes, which were induced by the administration of methoxamine hydrochloride, both with continuous driving of the UPVAD as well as without assistance. BRS values during the UPVAD support and without assistance were 1.60 +/- 0.30 msec/mm Hg and 0.98 +/- 0.22 msec/mm Hg (n = 5, P < 0.05), respectively. BRS was significantly improved during left ventricular assistance. Therefore, UPVAD support might decrease sympathetic nerve activity and increase parasympathetic nerve activity to improve both microcirculation and organ function.

Eigenmode analysis of a high-gain free-electron laser based on a transverse gradient undulator

DOE PAGES

Baxevanis, Panagiotis; Huang, Zhirong; Ruth, Ronald; ...

2015-01-27

Here, the use of a transverse gradient undulator (TGU) is viewed as an attractive option for free-electron lasers (FELs) driven by beams with a large energy spread. By suitably dispersing the electron beam and tilting the undulator poles, the energy spread effect can be substantially mitigated. However, adding the dispersion typically leads to electron beams with large aspect ratios. As a result, the presence of higher-order modes in the FEL radiation can become significant. To investigate this effect, we study the eigenmode properties of a TGU-based, high-gain FEL, using both an analytically-solvable model and a variational technique. Our analysis, whichmore » includes the fundamental and the higher-order FEL eigenmodes, can provide an estimate of the mode content for the output radiation. This formalism also enables us to study the trade-off between FEL gain and transverse coherence. Numerical results are presented for a representative soft X-ray, TGU FEL example.« less

Eigenmode analysis of a high-gain free-electron laser based on a transverse gradient undulator

NASA Astrophysics Data System (ADS)

Baxevanis, Panagiotis; Huang, Zhirong; Ruth, Ronald; Schroeder, Carl B.

2015-01-01

The use of a transverse gradient undulator (TGU) is viewed as an attractive option for free-electron lasers (FELs) driven by beams with a large energy spread. By suitably dispersing the electron beam and tilting the undulator poles, the energy spread effect can be substantially mitigated. However, adding the dispersion typically leads to electron beams with large aspect ratios. As a result, the presence of higher-order modes in the FEL radiation can become significant. To investigate this effect, we study the eigenmode properties of a TGU-based, high-gain FEL, using both an analytically-solvable model and a variational technique. Our analysis, which includes the fundamental and the higher-order FEL eigenmodes, can provide an estimate of the mode content for the output radiation. This formalism also enables us to study the trade-off between FEL gain and transverse coherence. Numerical results are presented for a representative soft X-ray, TGU FEL example.

Performance of 2G-HTS REBCO undulator coils impregnated epoxies mixed with different fillers

DOE PAGES

Kesgin, Ibrahim; Hasse, Quentin; Ivanyushenkov, Yury; ...

2016-12-12

The use of second-generation high-temperature superconducting-coated conductors enables an enhancement of the performance of undulator magnets. However, preventing the motion of the wire and providing sufficient conduction cooling to the winding stacks have remained challenges. In this study, we have evaluated epoxy impregnation techniques to address these issues. Epoxy resin was prepared with different nanopowders and the effect on the performance of the undulator coil pack was investigated. All epoxy impregnated coils showed smaller n values and some degree of deterioration of the critical current I c. The I c degradation was most pronounced for epoxy mixed with high aspectmore » ratio multiwalled carbon nanotubes (MWCNTs). It has been found that the crack formation in the epoxy results in plastic deformation of the copper stabilizer layer, which causes the underlying ceramic REBCO superconducting layer to crack resulting in degradation of the superconducting tape performance. As a result, careful adjustment of epoxy thickness surrounding the superconductor and the powder ratio in the epoxy eliminate the performance degradation.« less

Development of Mini-pole Superconducting Undulator

NASA Astrophysics Data System (ADS)

Jan, J. C.; Hwang, C. S.; Lin, P. H.; Chang, C. H.; Lin, F. Y.

2007-01-01

A mini-pole superconducting undulator with a 15mm period length (SU15) was developed at the National Synchrotron Radiation Research Center (NSRRC). The coil was wound by a superconducting (SC) NbTi wire with small dimensions and low Cu/SC ratio. The design field strength of SU15 with 158turns/pole was 1.4T at 215A, and the magnet gap was 5.6 mm. Extra trim coils and poles are mounted on the main iron pole. The trim coils directly compensate for the strength error of the peak field. The prototype racetrack iron pole was fabricated via electric discharge machining to produce a complete set of 40-poles. The coil was impregnated by epoxy and wrapped in Kapton to maintain insulation between coil and iron pole. A substitution beam duct was built and assembled with the magnet array and tested in the test Dewar. The conceptual design of bath liquid helium (LHe) cryostat has to tolerate more image current and radiation heating on the beam duct.

Linac coherent light source (LCLS) undulator RF BPM system.

DOE Office of Scientific and Technical Information (OSTI.GOV)

Lill, R.; Waldschmidt, G.; Morrison, L.

2006-01-01

The Linac Coherent Light Source (LCLS) will be the world's first x-ray free-electron laser (FEL) when it becomes operational in 2009. The LCLS is currently in the construction phase. The beam position monitor (BPM) system planned for the LCLS undulator will incorporate a high-resolution X-band cavity BPM system described in this paper. The BPM system will provide high-resolution measurements of the electron beam trajectory on a pulse-to-pulse basis and over many shots. The X-band cavity BPM size, simple fabrication, and high resolution make it an ideal choice for LCLS beam position detection. We will discuss the system specifications, design, andmore » prototype test results.« less

Analysis of a static undulation on the surface of a thin dielectric liquid layer formed by dielectrophoresis forces

NASA Astrophysics Data System (ADS)

Brown, Carl V.; McHale, Glen; Mottram, Nigel J.

2011-07-01

A layer of insulating liquid of dielectric constant ɛOil and average thickness h- coats a flat surface at y = 0 at which a one-dimensional sinusoidal potential V(x ,0)=VOcos(πx /p) is applied. Dielectrophoresis forces create a static undulation (or "wrinkle") distortion h(x) of period p at the liquid/air interface. Analytical expressions have been derived for the electrostatic energy and the interfacial energy associated with the surface undulation when h(x)=h--(1/2)Acos(2πx /p) yielding a scaling relationship for A as a function of h-, p, VO, ɛOil and the surface tension. The analysis is valid as A/p → 0, and in this limit convergence with numerical simulation of the system is shown.

Micropole Undulators In Synchrotron Radiation Technology: Design And Construction Of A Submillimeter Period Prototype With A 3 Kilogauss Peak Field At SSRL

NASA Astrophysics Data System (ADS)

Tatchyn, Roman; Csonka, Paul

1986-01-01

The availability of undulators with submillimeter periods will profoundly affect the future development of soft x-ray sources and their attendant instrumentation. Outputs comparable to those of present-day conventional undulators, obtainable with much lower energy storage rings, is only one promising aspect of such devices. This paper critically examines some of the future prospects of such devices and describes the design and practical construction of a 1" long prototype consisting of 35 periods. A proposed experiment to test this device on a linac is described.

Ice Velocity Mapping of Ross Ice Shelf, Antarctica by Matching Surface Undulations Measured by Icesat Laser Altimetry

NASA Technical Reports Server (NTRS)

Lee, Choon-Ki; Han, Shin-Chan; Yu, Jaehyung; Scambos, Ted A.; Seo, Ki-Weon

2012-01-01

We present a novel method for estimating the surface horizontal velocity on ice shelves using laser altimetrydata from the Ice Cloud and land Elevation Satellite (ICESat; 20032009). The method matches undulations measured at crossover points between successive campaigns.

Scattering Response of Sucrose Clusters with Intense XFEL Pulses in Water Window

NASA Astrophysics Data System (ADS)

Ho, Phay; Benedikt Daurer, Benedikt; Bielecki, Johan; Hantke, Max; Maia, Filipe; Knight, Chris; Hajdu, Janos; Young, Linda; Bostedt, Christoph

2017-04-01

We present a combined experimental and theoretical study about the effects of non-linear x-ray ionization dynamics on the scattering response of molecular clusters in the soft x-ray regime that includes and goes beyond the water window. Nanosized sucrose clusters were irradiated with intense XFEL pulses (photon energy from 500 to 1500 eV and pulse duration of 180 fs). Surprisingly, the measured scattering signals near the oxygen K-edge in the water window are found to be substantially smaller than those at higher photon energies. We employ Monte-Carlo/Molecular Dynamics calculations to investigate the x-ray processes as a function of pulse parameters (photon energy, bandwidth and pulse duration) and cluster size. We demonstrate the important role of resonant excitation (RE) in the molecular scattering response in the water window. In particular, 1s ->2p RE cycling enabled in the oxygen atom/ion provide additional ionization pathways which, combined with the long pulse duration, lead to substantial reduction in scattering power of sugar clusters for photon energies just below the oxygen K-edge. Supported by the Chemical Sciences, Geosciences, and Biosciences Division, Office of Basic Energy Sciences, Office of Science, US Dept of Energy, Contract DE-AC02-06CH11357.

Construction and Commissioning of A 248 m-long Beamline with X-ray Undulator Light Source

DOE Office of Scientific and Technical Information (OSTI.GOV)

Suzuki, Yoshio; Uesugi, Kentaro; Takimoto, Naoki

2004-05-12

A medium-length beamline with undulator source, BL20XU at SPring-8, was constructed, and opened to public use. The distance from source point to the end of the beamline is 248 m. By utilizing the long beam transport path, the beamline has advantages for experiment that requires high spatial coherence in hard X-ray regions.

Research on the effects of geometrical and material uncertainties on the band gap of the undulated beam

NASA Astrophysics Data System (ADS)

Li, Yi; Xu, Yanlong

2017-09-01

Considering uncertain geometrical and material parameters, the lower and upper bounds of the band gap of an undulated beam with periodically arched shape are studied by the Monte Carlo Simulation (MCS) and interval analysis based on the Taylor series. Given the random variations of the overall uncertain variables, scatter plots from the MCS are used to analyze the qualitative sensitivities of the band gap respect to these uncertainties. We find that the influence of uncertainty of the geometrical parameter on the band gap of the undulated beam is stronger than that of the material parameter. And this conclusion is also proved by the interval analysis based on the Taylor series. Our methodology can give a strategy to reduce the errors between the design and practical values of the band gaps by improving the accuracy of the specially selected uncertain design variables of the periodical structures.

Single shot polarization characterization of XUV FEL pulses from crossed polarized undulators

DOE Office of Scientific and Technical Information (OSTI.GOV)

Ferrari, E.; Allaria, E.; Buck, J.

Polarization control is a key feature of light generated by short-wavelength free-electron lasers. In this work, we report the first experimental characterization of the polarization properties of an extreme ultraviolet high gain free-electron laser operated with crossed polarized undulators. We research the average degree of polarization and the shot-to-shot stability and we analyze aspects such as existing possibilities for controlling and switching the polarization state of the emitted light. The results are in agreement with predictions based on Gaussian beams propagation.

Single shot polarization characterization of XUV FEL pulses from crossed polarized undulators

DOE PAGES

Ferrari, E.; Allaria, E.; Buck, J.; ...

2015-08-28

Polarization control is a key feature of light generated by short-wavelength free-electron lasers. In this work, we report the first experimental characterization of the polarization properties of an extreme ultraviolet high gain free-electron laser operated with crossed polarized undulators. We research the average degree of polarization and the shot-to-shot stability and we analyze aspects such as existing possibilities for controlling and switching the polarization state of the emitted light. The results are in agreement with predictions based on Gaussian beams propagation.

NOVEL CHAMBER DESIGN FOR AN IN-VACUUM CRYO-COOLED MINI-GAP UNDULATOR.

DOE Office of Scientific and Technical Information (OSTI.GOV)

HU, J.-P.; FOERSTER, C.L.; SKARITKA, J.R.

2006-05-24

A stainless steel, Ultra-High Vacuum (UHV) chamber, featuring a large vertical rectangular port (53''W by 16''H), has been fabricated to house the one-meter magnet assembly of a newly installed undulator insertion device for beamline X-25 at the National Synchrotron Light Source. To achieve UHV, the new chamber is equipped with a differential ion pump, NEG pump, nude ion gauge, residual gas analyzer, and an all metal roughing valve. Temperature of the magnet assembly is maintained below 90 C during vacuum bake. The large rectangular port cover is sealed to the main flange of the chamber using a one-piece flat aluminummore » gasket and special sealing surfaces developed exclusively by Nor-Cal Products, Inc. The large flange provides easy access to the gap of the installed magnet girders for in situ magnetic measurements and shimming. Special window ports were designed into the cover and chamber for manipulation of optical micrometers external to the chamber to provide precise measurements of the in-vacuum magnet gap. The vacuum chamber assembly features independently vacuum-isolated feedthroughs that can be used for either water-or-cryogenic refrigeration-cooling of the monolithic magnet girders. This would allow for cryogenic-cooled permanent magnet operation and has been successfully tested within temperature range of +100 C to -150 C. Details of the undulator assembly for beamline X-25 is described in the paper.« less

Using superconducting undulator for enhanced imaging capabilities of MaRIE

DOE Office of Scientific and Technical Information (OSTI.GOV)

Yampolsky, Nikolai

MaRIE x-ray free electron laser (FEL) is envisioned to deliver a burst of closely spaced in time pulses for enabling the capability of studying the dynamic processes in a sample. MaRIE capability can be largely enhanced using the superconducting undulator, which has the capability of doubling its period. This technology will allow reaching the photon energy as low as ~200-500 eV. As a result, the MaRIE facility will have a broader photon energy range enabling a larger variety of experiments. The soft x-ray capability is more likely to achieve the 3D imaging of dynamic processes in noncrystal materials than themore » hard x-ray capability alone.« less

Results of animal experiments using an undulation pump total artificial heart: analysis of 10 day and 19 day survival.

PubMed

Mochizuki, S; Abe, Y; Chinzei, T; Isoyama, T; Ono, T; Saito, I; Guba, P; Karita, T; Sun, Y P; Kouno, A; Suzuki, T; Baba, K; Mabuchi, K; Imachi, K

2000-01-01

An undulation pump is a special rotary blood pump in which rotation of a brushless DC motor is transformed to an undulating motion by a disc in the pump housing attached by means of a special link mechanism. In the blood pump, a closed line between the disc and housing moves from the inlet to the outlet by this undulating disc motion, which sucks and pushes the blood from the inlet to the outlet. Because the same phenomena occurs at both sides of the disc, a continuous flow is obtained when the motor rotational speed is constant. The pump flow pattern can be easily changed from continuous flow to pulsatile flow by controlling the motor drive current pattern. A seal membrane made of segmented polyurethane protects the blood from invading the link mechanism as well as the motor. UPTAH is fabricated with two undulation pumps and two brushless DC motors. Its size is 75 mm in diameter and 80 mm long, and it has one of the great advantage of no compliance chamber required in the system. UPTAHs were implanted under cardiopulmonary bypass (CPB) into the chest cavities of 16 goats, each weighing between 41 and 72 kg. No anticoagulant and antiplatelet agent was used after the surgery. The left atrial pressure was automatically controlled to prevent its elevation and sucking of the atrial wall into the atrial cuff. The following results were obtained: (1) UPTAHs fit well into all the goats; (2) the longest survival was 19.8 days, the cause of death was bleeding from the aortic anastomosis; (3) No thrombus was observed in the blood pump despite no anticoagulant use. Hemolysis depended upon the length of CPB during surgery. When CPB time was within 2 hours, hemolysis level returned to baseline within a few days of the surgery. UPTAH is a promising implantable TAH, because of its small size and easy controllability.

Undulated Nozzle for Enhanced Exit Area Mixing

NASA Technical Reports Server (NTRS)

Seiner, John M. (Inventor); Gilinsky, Mikhail M. (Inventor)

2000-01-01

A nozzle having an undulating surface for enhancing the mixing of a primary flow with a secondary flow or ambient air, without requiring an ejector. The nozzle includes a nozzle structure and design for introducing counter-rotating vorticity into the primary flow either through (i) internal surface corrugations where an axisymmetric line through each corrugation is coincident with an axisymmetric line through the center of the flow passageway or (ii) through one or more sets of alternating convexities and cavities in the internal surface of the nozzle where an axisymmetric line through each convexity and cavity is coincident with an axisymmetric line through the center of the flow passageway, and where the convexities contract from the entrance end towards the exit end. Exit area mixing is also enhanced by one or more chevrons attached to the exit edge of the nozzle. The nozzle is ideally suited for application as a jet engine nozzle. When used as a jet engine nozzle, noise suppression with simultaneous thrust augmentation/minimal thrust loss is achieved.

Comparison of undulation difference accuracies using gravity anomalies and gravity disturbances. [for ocean geoid

NASA Technical Reports Server (NTRS)

Jekeli, C.

1980-01-01

Errors in the outer zone contribution to oceanic undulation differences computed from a finite set of potential coefficients based on satellite measurements of gravity anomalies and gravity disturbances are analyzed. Equations are derived for the truncation errors resulting from the lack of high-degree coefficients and the commission errors arising from errors in the available lower-degree coefficients, and it is assumed that the inner zone (spherical cap) is sufficiently covered by surface gravity measurements in conjunction with altimetry or by gravity anomaly data. Numerical computations of error for various observational conditions reveal undulation difference errors ranging from 13 to 15 cm and from 6 to 36 cm in the cases of gravity anomaly and gravity disturbance data, respectively for a cap radius of 10 deg and mean anomalies accurate to 10 mgal, with a reduction of errors in both cases to less than 10 cm as mean anomaly accuracy is increased to 1 mgal. In the absence of a spherical cap, both cases yield error estimates of 68 cm for an accuracy of 1 mgal and between 93 and 160 cm for the lesser accuracy, which can be reduced to about 110 cm by the introduction of a perfect 30-deg reference field.

Performance of Saga-University Beamline with Planer Undulator

DOE Office of Scientific and Technical Information (OSTI.GOV)

Azuma, J.; Takahashi, K.; Kamada, M.

2010-06-23

A planer undulator consisted of 24 periods of an 85-mm length has been installed in a 2.7-m straight section of the SAGA-LS, in order to provide brilliant soft x-rays for advanced researches on nano-surfaces and interfaces at the Saga-university beamline BL13. The photon flux of 2x10{sup 11} photons/100 mA was obtained at 133 eV, and the available photon energy was beyond 800 eV using higher harmonics. The achieved resolving power of the varied-line-spacing (VLS) monochromator system was 8,670 at 130 eV with slits of 15 um. This agrees very well with the value of 8,790 expected from the ray-tracing calculation.more » The details in the performance tests will be reported, indicating the high performance of the beamline BL13 for photoelectron spectroscopy in the soft x-ray region.« less

CSEM-Steel hybrid wiggler/undulator magnetic field studies

DOE Office of Scientific and Technical Information (OSTI.GOV)

Halbach, K.; Hoyer, E.; Marks, S.

1985-06-01

Current design of permanent magnet wiggler/undulators use either pure charge sheet equivalent material (CSEM) or the CSEM-Steel hybrid configuration. Hybrid configurations offer higher field strength at small gaps, field distributions dominated by the pole surfaces and pole tuning. Nominal performance of the hybrid is generally predicted using a 2-D magnetic design code neglecting transverse geometry. Magnetic measurements are presented showing transverse configuration influence on performance, from a combination of models using CSEMs, REC (H/sub c/ = 9.2 KOe) and NdFe (H/sub c/ = 10.7 kOe), different pole widths and end configurations. Results show peak field improvement using NdFe in placemore » of REC in identical models, gap peak field decrease with pole width decrease (all results less than computed 2-D fields), transverse gap field distributions, and importance of CSEM material overhanging the poles in the transverse direction for highest gap fields. 3 refs., 6 figs.« less

Light-induced structural changes and the site of O=O bond formation in PSII caught by XFEL.

PubMed

Suga, Michihiro; Akita, Fusamichi; Sugahara, Michihiro; Kubo, Minoru; Nakajima, Yoshiki; Nakane, Takanori; Yamashita, Keitaro; Umena, Yasufumi; Nakabayashi, Makoto; Yamane, Takahiro; Nakano, Takamitsu; Suzuki, Mamoru; Masuda, Tetsuya; Inoue, Shigeyuki; Kimura, Tetsunari; Nomura, Takashi; Yonekura, Shinichiro; Yu, Long-Jiang; Sakamoto, Tomohiro; Motomura, Taiki; Chen, Jing-Hua; Kato, Yuki; Noguchi, Takumi; Tono, Kensuke; Joti, Yasumasa; Kameshima, Takashi; Hatsui, Takaki; Nango, Eriko; Tanaka, Rie; Naitow, Hisashi; Matsuura, Yoshinori; Yamashita, Ayumi; Yamamoto, Masaki; Nureki, Osamu; Yabashi, Makina; Ishikawa, Tetsuya; Iwata, So; Shen, Jian-Ren

2017-03-02

Photosystem II (PSII) is a huge membrane-protein complex consisting of 20 different subunits with a total molecular mass of 350 kDa for a monomer. It catalyses light-driven water oxidation at its catalytic centre, the oxygen-evolving complex (OEC). The structure of PSII has been analysed at 1.9 Å resolution by synchrotron radiation X-rays, which revealed that the OEC is a Mn 4 CaO 5 cluster organized in an asymmetric, 'distorted-chair' form. This structure was further analysed with femtosecond X-ray free electron lasers (XFEL), providing the 'radiation damage-free' structure. The mechanism of O=O bond formation, however, remains obscure owing to the lack of intermediate-state structures. Here we describe the structural changes in PSII induced by two-flash illumination at room temperature at a resolution of 2.35 Å using time-resolved serial femtosecond crystallography with an XFEL provided by the SPring-8 ångström compact free-electron laser. An isomorphous difference Fourier map between the two-flash and dark-adapted states revealed two areas of apparent changes: around the Q B /non-haem iron and the Mn 4 CaO 5 cluster. The changes around the Q B /non-haem iron region reflected the electron and proton transfers induced by the two-flash illumination. In the region around the OEC, a water molecule located 3.5 Å from the Mn 4 CaO 5 cluster disappeared from the map upon two-flash illumination. This reduced the distance between another water molecule and the oxygen atom O4, suggesting that proton transfer also occurred. Importantly, the two-flash-minus-dark isomorphous difference Fourier map showed an apparent positive peak around O5, a unique μ 4 -oxo-bridge located in the quasi-centre of Mn1 and Mn4 (refs 4,5). This suggests the insertion of a new oxygen atom (O6) close to O5, providing an O=O distance of 1.5 Å between these two oxygen atoms. This provides a mechanism for the O=O bond formation consistent with that proposed previously.

Observation and analysis of self-amplified spontaneous emission at the APS low-energy undulator test line

NASA Astrophysics Data System (ADS)

Arnold, N. D.; Attig, J.; Banks, G.; Bechtold, R.; Beczek, K.; Benson, C.; Berg, S.; Berg, W.; Biedron, S. G.; Biggs, J. A.; Borland, M.; Boerste, K.; Bosek, M.; Brzowski, W. R.; Budz, J.; Carwardine, J. A.; Castro, P.; Chae, Y.-C.; Christensen, S.; Clark, C.; Conde, M.; Crosbie, E. A.; Decker, G. A.; Dejus, R. J.; DeLeon, H.; Den Hartog, P. K.; Deriy, B. N.; Dohan, D.; Dombrowski, P.; Donkers, D.; Doose, C. L.; Dortwegt, R. J.; Edwards, G. A.; Eidelman, Y.; Erdmann, M. J.; Error, J.; Ferry, R.; Flood, R.; Forrestal, J.; Freund, H.; Friedsam, H.; Gagliano, J.; Gai, W.; Galayda, J. N.; Gerig, R.; Gilmore, R. L.; Gluskin, E.; Goeppner, G. A.; Goetzen, J.; Gold, C.; Gorski, A. J.; Grelick, A. E.; Hahne, M. W.; Hanuska, S.; Harkay, K. C.; Harris, G.; Hillman, A. L.; Hogrefe, R.; Hoyt, J.; Huang, Z.; Jagger, J. M.; Jansma, W. G.; Jaski, M.; Jones, S. J.; Keane, R. T.; Kelly, A. L.; Keyser, C.; Kim, K.-J.; Kim, S. H.; Kirshenbaum, M.; Klick, J. H.; Knoerzer, K.; Koldenhoven, R. J.; Knott, M.; Labuda, S.; Laird, R.; Lang, J.; Lenkszus, F.; Lessner, E. S.; Lewellen, J. W.; Li, Y.; Lill, R. M.; Lumpkin, A. H.; Makarov, O. A.; Markovich, G. M.; McDowell, M.; McDowell, W. P.; McNamara, P. E.; Meier, T.; Meyer, D.; Michalek, W.; Milton, S. V.; Moe, H.; Moog, E. R.; Morrison, L.; Nassiri, A.; Noonan, J. R.; Otto, R.; Pace, J.; Pasky, S. J.; Penicka, J. M.; Pietryla, A. F.; Pile, G.; Pitts, C.; Power, J.; Powers, T.; Putnam, C. C.; Puttkammer, A. J.; Reigle, D.; Reigle, L.; Ronzhin, D.; Rotela, E. R.; Russell, E. F.; Sajaev, V.; Sarkar, S.; Scapino, J. C.; Schroeder, K.; Seglem, R. A.; Sereno, N. S.; Sharma, S. K.; Sidarous, J. F.; Singh, O.; Smith, T. L.; Soliday, R.; Sprau, G. A.; Stein, S. J.; Stejskal, B.; Svirtun, V.; Teng, L. C.; Theres, E.; Thompson, K.; Tieman, B. J.; Torres, J. A.; Trakhtenberg, E. M.; Travish, G.; Trento, G. F.; Vacca, J.; Vasserman, I. B.; Vinokurov, N. A.; Walters, D. R.; Wang, J.; Wang, X. J.; Warren, J.; Wesling, S.; Weyer, D. L.; Wiemerslage, G.; Wilhelmi, K.; Wright, R.; Wyncott, D.; Xu, S.; Yang, B.-X.; Yoder, W.; Zabel, R. B.

2001-12-01

Exponential growth of self-amplified spontaneous emission at 530 nm was first experimentally observed at the Advanced Photon Source low-energy undulator test line in December 1999. Since then, further detailed measurements and analysis of the results have been made. Here, we present the measurements and compare these with calculations based on measured electron beam properties and theoretical expectations.

Subradiant spontaneous undulator emission through collective suppression of shot noise

DOE PAGES

Ratner, D.; Hemsing, E.; Gover, A.; ...

2015-05-01

The phenomenon of Dicke’s subradiance, in which the collective properties of a system suppress radiation, has received broad interest in atomic physics. Recent theoretical papers in the field of relativistic electron beams have proposed schemes to achieve subradiance through suppression of shot noise current fluctuations. The resulting “quiet” beam generates less spontaneous radiation than emitted even by a shot noise beam when oscillating in an undulator. Quiet beams could have diverse accelerator applications, including lowering power requirements for seeded free-electron lasers and improving efficiency of hadron cooling. In this paper we present experimental observation of a strong reduction in undulatormore » radiation, demonstrating the feasibility of noise suppression as a practical tool in accelerator physics.« less

Subradiant spontaneous undulator emission through collective suppression of shot noise

DOE Office of Scientific and Technical Information (OSTI.GOV)

Ratner, D.; Hemsing, E.; Gover, A.

The phenomenon of Dicke’s subradiance, in which the collective properties of a system suppress radiation, has received broad interest in atomic physics. Recent theoretical papers in the field of relativistic electron beams have proposed schemes to achieve subradiance through suppression of shot noise current fluctuations. The resulting “quiet” beam generates less spontaneous radiation than emitted even by a shot noise beam when oscillating in an undulator. Quiet beams could have diverse accelerator applications, including lowering power requirements for seeded free-electron lasers and improving efficiency of hadron cooling. In this paper we present experimental observation of a strong reduction in undulatormore » radiation, demonstrating the feasibility of noise suppression as a practical tool in accelerator physics.« less

An Overview of the MaRIE X-FEL and Electron Radiography LINAC RF Systems

DOE Office of Scientific and Technical Information (OSTI.GOV)

Bradley, Joseph Thomas III; Rees, Daniel Earl; Scheinker, Alexander

The purpose of the Matter-Radiation Interactions in Extremes (MaRIE) facility at Los Alamos National Laboratory is to investigate the performance limits of materials in extreme environments. The MaRIE facility will utilize a 12 GeV linac to drive an X-ray Free-Electron Laser (FEL). Most of the same linac will also be used to perform electron radiography. The main linac is driven by two shorter linacs; one short linac optimized for X-FEL pulses and one for electron radiography. The RF systems have historically been the one of the largest single component costs of a linac. We will describe the details of themore » different types of RF systems required by each part of the linacs. Starting with the High Power RF system, we will present our methodology for the choice of RF system peak power and pulselength with respect to klystron parameters, modulator parameters, performance requirements and relative costs. We will also present an overview of the Low Level RF systems that are proposed for MaRIE and briefly describe their use with some proposed control schemes.« less

Comparison of Powerlifting Performance in Trained Men Using Traditional and Flexible Daily Undulating Periodization.

PubMed

Colquhoun, Ryan J; Gai, Christopher M; Walters, Jeoffrey; Brannon, Andrew R; Kilpatrick, Marcus W; DʼAgostino, Dominic P; Campbell, Bill I

2017-02-01

Colquhoun, RJ, Gai, CM, Walters, J, Brannon, AR, Kilpatrick, MW, D'Agostino, DP, and Campbell, WI. Comparison of powerlifting performance in trained men using traditional and flexible daily undulating periodization. J Strength Cond Res 31(2): 283-291, 2017-Daily undulating periodization (DUP) is a growing trend, both in practice and in the scientific literature. A new form of DUP, flexible daily undulating periodization (FDUP), allows for athletes to have some autonomy by choosing the order of their training. The purpose of this study was to compare an FDUP model to a traditional model of DUP on powerlifting performance in resistance-trained men. Twenty-five resistance-trained men were randomly assigned to one of 2 groups: FDUP (N = 14) or DUP (N = 11). All participants possessed a minimum of 6 months of resistance training experience and were required to squat, bench press, and deadlift 125, 100, and 150% of their body mass, respectively. Dependent variables assessed at baseline and after the 9-week training program included bench press 1 repetition maximum (1RM), squat 1RM, deadlift 1RM, powerlifting total, Wilks Coefficient, fat mass, and fat-free mass (FFM). Dependent variables assessed during each individual training session were motivation to train, Session Rating of Perceived Exertion (Session RPE), and satisfaction with training session. After the 9-week training program, no significant differences in intensity or volume were found between groups. Both groups significantly improved bench press 1RM (FDUP: +6.5 kg; DUP: +8.8 kg), squat 1RM (FDUP: +15.6 kg; DUP: +18.0 kg), deadlift 1RM (FDUP: +14.8 kg; DUP: +13.6 kg), powerlifting total (FDUP: +36.8 kg; DUP: +40.4 kg), and Wilks Coefficient (FDUP: +24.8; DUP: +26.0) over the course of study (p = <0.001 for each variable). There was also a significant increase in FFM (FDUP: +0.8 kg; DUP: +0.8 kg) for both groups (p = 0.003). There were no differences in motivation to train, session RPE, or satisfaction with

Cryogenic Field Measurement of Pr2Fe14B Undulator and Performance Enhancement Options at the NSLS-II

DOE Office of Scientific and Technical Information (OSTI.GOV)

Tanabe, T.; Chubar, O.; Harder, David A.

2009-09-27

Short period (14.5mm) hybrid undulator arrays composed of Praseodymium Iron Boron (Pr{sub 2}Fe{sub 14}B) magnets (CR53, NEOMAX, Inc.) and vanadium permendur poles have been fabricated at Brookhaven National Laboratory. Unlike Neodymium Iron Boron (Nd{sub 2}Fe{sub 14}B) magnets which exhibit spin reorientation at temperatures below 150K, PrFeB arrays monotonically increase performance with lower operating temperature. It opens up the posibility for use in operating a cryo-permanent magnet undulator (CPMU) in the range of 40K to 60K where very efficient cryocoolers are available. Magnetic flux density profiles were measured at various temperature ranges from room temperature down to liquid helium (LHe) usingmore » the Vertical Testing Facility (VTF) at the National Snchrotron Light Source-II (NSLS-II). Temperature variations of phase error have been characterized. In addition, we examined the use of textured Dysprosium (Dy) poles to replace permendur poles to obtain further improvement in performance.« less

Compensating the electron beam energy spread by the natural transverse gradient of laser undulator in all-optical x-ray light sources.

PubMed

Zhang, Tong; Feng, Chao; Deng, Haixiao; Wang, Dong; Dai, Zhimin; Zhao, Zhentang

2014-06-02

All-optical ideas provide a potential to dramatically cut off the size and cost of x-ray light sources to the university-laboratory scale, with the combination of the laser-plasma accelerator and the laser undulator. However, the large longitudinal energy spread of the electron beam from laser-plasma accelerator may hinder the way to high brightness of these all-optical light sources. In this paper, the beam energy spread effect is proposed to be significantly compensated by the natural transverse gradient of a laser undulator when properly transverse-dispersing the electron beam. Theoretical analysis and numerical simulations on conventional laser-Compton scattering sources and high-gain all-optical x-ray free-electron lasers with the electron beams from laser-plasma accelerators are presented.

Initial performances of first undulator-based hard x-ray beamlines of NSLS-II compared to simulations

DOE Office of Scientific and Technical Information (OSTI.GOV)

Chubar, Oleg, E-mail: chubar@bnl.gov; Chu, Yong S.; Huang, Xiaojing

2016-07-27

Commissioning of the first X-ray beamlines of NSLS-II included detailed measurements of spectral and spatial distributions of the radiation at different locations of the beamlines, from front-ends to sample positions. Comparison of some of these measurement results with high-accuracy calculations of synchrotron (undulator) emission and wavefront propagation through X-ray transport optics, performed using SRW code, is presented.

Impact of Nasser Lake on gravity reduction and geoidal heights for Egypt

NASA Astrophysics Data System (ADS)

Abd-Elmotaal, Hussein A.; Makhloof, Atef; Hassan, Ayman; Ashry, Mostafa

2018-06-01

In the course of the IAG African Geoid Project, it is needed to study the impact of the lakes on the gravity reduction and geoidal heights. The aim of this paper is to study the impact of the water in Nasser Lake on gravity reduction and geoidal heights for Egypt. The determination of the gravimetric geoid is based on the well-known remove-restore technique. The problem of the lakes occurs because the popular programs widely used in practice (e.g., TC-program (Forsberg, 1984)) assume that all positive elevations are filled with rock topography, and all negative elevations are filled with ocean water. This is, however, not true for the case of Nasser Lake, which lies completely above sea level, at about 180 m elevation, with a water depth of about 20 m. The paper presents an approach on estimating the impact of Nasser Lake on gravity reduction and geoidal heights using TC-program with some tricky cases. The results show that the impact of Nasser Lake on both gravity anomalies and geoid undulation is limited to the area of the lake. The impact of Nasser Lake on the gravity anomalies is in the order of sub mgal, while the impact of Nasser lake on the geoid undulation is significant and reaches few centimeters.

Contribution of collagen fiber undulation to regional biomechanical properties along porcine thoracic aorta.

PubMed

Zeinali-Davarani, Shahrokh; Wang, Yunjie; Chow, Ming-Jay; Turcotte, Raphaël; Zhang, Yanhang

2015-05-01

As major extracellular matrix components, elastin, and collagen play crucial roles in regulating the mechanical properties of the aortic wall and, thus, the normal cardiovascular function. The mechanical properties of aorta, known to vary with age and multitude of diseases as well as the proximity to the heart, have been attributed to the variations in the content and architecture of wall constituents. This study is focused on the role of layer-specific collagen undulation in the variation of mechanical properties along the porcine descending thoracic aorta. Planar biaxial tensile tests are performed to characterize the hyperelastic anisotropic mechanical behavior of tissues dissected from four locations along the thoracic aorta. Multiphoton microscopy is used to image the associated regional microstructure. Exponential-based and recruitment-based constitutive models are used to account for the observed mechanical behavior while considering the aortic wall as a composite of two layers with independent properties. An elevated stiffness is observed in distal regions compared to proximal regions of thoracic aorta, consistent with sharper and earlier collagen recruitment estimated for medial and adventitial layers in the models. Multiphoton images further support our prediction that higher stiffness in distal regions is associated with less undulation in collagen fibers. Recruitment-based models further reveal that regardless of the location, collagen in the media is recruited from the onset of stretching, whereas adventitial collagen starts to engage with a delay. A parameter sensitivity analysis is performed to discriminate between the models in terms of the confidence in the estimated model parameters.

Optical evaluation of the wave filtering properties of graded undulated lattices

NASA Astrophysics Data System (ADS)

Trainiti, G.; Rimoli, J. J.; Ruzzene, M.

2018-03-01

We investigate and experimentally demonstrate the elastic wave filtering properties of graded undulated lattices. Square reticulates composed of curved beams are characterized by graded mechanical properties which result from the spatial modulation of the curvature parameter. Among such properties, the progressive formation of frequency bandgaps leads to strong wave attenuation over a broad frequency range. The experimental investigation of wave transmission and the detection of full wavefields effectively illustrate this behavior. Transmission measurements are conducted using a scanning laser Doppler vibrometer, while a dedicated digital image correlation procedure is implemented to capture in-plane wave motion at selected frequencies. The presented results illustrate the broadband attenuation characteristics resulting from spatial grading of the lattice curvature, whose in-depth investigation is enabled by the presented experimental procedures.

Influence of higher harmonics of the undulator in X-ray polarimetry and crystal monochromator design.

PubMed

Marx-Glowna, Berit; Schulze, Kai S; Uschmann, Ingo; Kämpfer, Tino; Weber, Günter; Hahn, Christoph; Wille, Hans Christian; Schlage, Kai; Röhlsberger, Ralf; Förster, Eckhart; Stöhlker, Thomas; Paulus, Gerhard G

2015-09-01

The spectrum of the undulator radiation of beamline P01 at Petra III has been measured after passing a multiple reflection channel-cut polarimeter. Odd and even harmonics up to the 15th order, as well as Compton peaks which were produced by the high harmonics in the spectrum, could been measured. These additional contributions can have a tremendous influence on the performance of the polarimeter and have to be taken into account for further polarimeter designs.

An X-Ray Source for Lithography Based on a Quasi-Optical Maser Undulator

DTIC Science & Technology

1989-05-09

an electron, c is the speed of light in vacuo, B is the peak magnetic induction and X is the period of the planar undulator or wiggler, the wavelength...relativistic motion is given 11 p = Le’ Y 6 [2 - X )2] (4) where = v/c is the particle velocity normalized to the speAd of light , and § /c, where v = -v is...k0 z + Wt),) (7) where E is the amplitude of the electric field, w is the radian frequency A and k a (0,0,k ) is the wave- vector . ez is a unit vector

The formation mechanism and impact of streamwise vortices on NACA 0021 airfoil's performance with undulating leading edge modification

NASA Astrophysics Data System (ADS)

Rostamzadeh, N.; Hansen, K. L.; Kelso, R. M.; Dally, B. B.

2014-10-01

Wings with tubercles have been shown to display advantageous loading behavior at high attack angles compared to their unmodified counterparts. In an earlier study by the authors, it was shown that an undulating leading-edge configuration, including but not limited to a tubercled model, induces a cyclic variation in circulation along the span that gives rise to the formation of counter-rotating streamwise vortices. While the aerodynamic benefits of full-span tubercled wings have been associated with the presence of such vortices, their formation mechanism and influence on wing performance are still in question. In the present work, experimental and numerical tests were conducted to further investigate the effect of tubercles on the flow structure over full-span modified wings based on the NACA 0021 profile, in the transitional flow regime. It is found that a skew-induced mechanism accounts for the formation of streamwise vortices whose development is accompanied by flow separation in delta-shaped regions near the trailing edge. The presence of vortices is detrimental to the performance of full-span wings pre-stall, however renders benefits post-stall as demonstrated by wind tunnel pressure measurement tests. Finally, primary and secondary vortices are identified post-stall that produce an enhanced momentum transfer effect that reduces flow separation, thus increasing the generated amount of lift.

Radiological considerations in the operation of the low-energy undulator test line (LEUTL).

DOE Office of Scientific and Technical Information (OSTI.GOV)

Moe, H.J.

1998-11-11

The Low-Energy Undulator Test Line (LEUTL) is a facility that uses the existing APS linac to accelerate electrons up to an energy of 700 MeV. These electrons are transported through the Pm into a portion of the booster synchrotrons and on into the LEUTL main enclosure (MIL 97). Figure 1 shows the layout of the LEUTL building, which consists of an earth-benned concrete enclosure and an end-station building. The concrete enclosure houses the electron beamline, test undulator, and beam dump. This facility is about 51 m long and 3.66 m wide. Technical components and diagnostics for characterizing the undulator lightmore » are found in the end station. This building has about 111 m{sup 2} of floor space. This note deals with the radiological considerations of operations using electrons up to 700 MeV and at power levels up to the safety envelope of 1 kW. Previous radiological considerations for electron and positron operations in the linac, PAR, and synchrotrons have been addressed else-where (MOE 93a, 93b, and 93c). Much of the methodology discussed in the previous writeups, as well as in MOE 94, has been used in the computations in this note. The radiological aspects that are addressed include the following: prompt secondary radiation (bremsstrahlung, giant resonance neutrons, medium- and high-energy neutrons) produced by electrons interacting in a beam stop or in component structures; skyshine radiation, which produces a radiation field in nearby areas and at the nearest off-site location; radioactive gases produced by neutron irradiation of air in the vicinity of a particle loss site; noxious gases (ozone and others) produced in air by the escaping bremsstrahlung radiation that results from absorbing particles in the components; activation of the LEUTL components that results in a residual radiation field in the vicinity of these materials following shutdown; potential activation of water used for cooling the magnets and other purposes in the tunnel; and evaluation

The effect of traveling wave shapes in the maneuver control and efficiency of an underwater robot propelled by an undulating fin

NASA Astrophysics Data System (ADS)

Liu, Hanlin; Curet, Oscar

2016-11-01

Effective control of propulsive undulating fins has the potential to enhance the maneuverability and efficiency of underwater vehicles allowing them to navigate in more complex environments. Aquatic animals using this type of propulsion are able to perform complex maneuvers by sending different traveling waves along one or multiple elongated fins. Recent work has investigated the propulsive forces, the hydrodynamics and the efficiency of an undulating ribbon fin. However, it is still not understood how different traveling wave shapes along the fin can be used to control the hydrodynamic forces and torques to perform different maneuvers. In this work, we study the effect of traveling wave shapes on the hydrodynamic forces and torques, swimming speed, maneuver control and propulsive performance of an underwater vehicle propelled by an undulating fin. The underwater robot propels by actuating a fin that is composed of sixteen independent rays interconnected with a flexible membrane. The hull contains all the electronics, batteries, motors and sensors. The underwater vehicle was tested in a water tank-flume facility. In a series of experiments, we measured the motion of the vessel and the power consumption for different traveling wave patterns. In addition, we measured the flow around the fin using Particle Image Velocimetry. We present the results concerning the power distribution along the fin, propulsive efficiency, free-swimming speed and pitch control based on different fin kinematics. National Science Foundation under Grant No. 1420774.

Comparison between linear and daily undulating periodized resistance training to increase strength.

PubMed

Prestes, Jonato; Frollini, Anelena B; de Lima, Cristiane; Donatto, Felipe F; Foschini, Denis; de Cássia Marqueti, Rita; Figueira, Aylton; Fleck, Steven J

2009-12-01

To determine the most effective periodization model for strength and hypertrophy is an important step for strength and conditioning professionals. The aim of this study was to compare the effects of linear (LP) and daily undulating periodized (DUP) resistance training on body composition and maximal strength levels. Forty men aged 21.5 +/- 8.3 and with a minimum 1-year strength training experience were assigned to an LP (n = 20) or DUP group (n = 20). Subjects were tested for maximal strength in bench press, leg press 45 degrees, and arm curl (1 repetition maximum [RM]) at baseline (T1), after 8 weeks (T2), and after 12 weeks of training (T3). Increases of 18.2 and 25.08% in bench press 1 RM were observed for LP and DUP groups in T3 compared with T1, respectively (p < or = 0.05). In leg press 45 degrees , LP group exhibited an increase of 24.71% and DUP of 40.61% at T3 compared with T1. Additionally, DUP showed an increase of 12.23% at T2 compared with T1 and 25.48% at T3 compared with T2. For the arm curl exercise, LP group increased 14.15% and DUP 23.53% at T3 when compared with T1. An increase of 20% was also found at T2 when compared with T1, for DUP. Although the DUP group increased strength the most in all exercises, no statistical differences were found between groups. In conclusion, undulating periodized strength training induced higher increases in maximal strength than the linear model in strength-trained men. For maximizing strength increases, daily intensity and volume variations were more effective than weekly variations.

Fabrication and assembly of a superconducting undulator for the advanced photon source

DOE Office of Scientific and Technical Information (OSTI.GOV)

Hasse, Quentin; Fuerst, J. D.; Ivanyushenkov, Y.

2014-01-29

A prototype superconducting undulator magnet (SCU0) has been built at the Advanced Photon Source (APS) of Argonne National Laboratory (ANL) and has successfully completed both cryogenic performance and magnetic measurement test programs. The SCU0 closed loop, zero-boil-off cryogenic system incorporates high temperature superconducting (HTS) current leads, cryocoolers, a LHe reservoir supplying dual magnetic cores, and an integrated cooled beam chamber. This system presented numerous challenges in the design, fabrication, and assembly of the device. Aspects of this R and D relating to both the cryogenic and overall assembly of the device are presented here. The SCU0 magnet has been installedmore » in the APS storage ring.« less

Cryogenic Field Measurement of Pr{sub 2}Fe{sub 14}B Undulator and Performance Enhancement Options at the NSLS-II

DOE Office of Scientific and Technical Information (OSTI.GOV)

Tanabe, Toshiya; Chubar, Oleg; Harder, David A.

2010-06-23

Short period (14.5mm) hybrid undulator arrays composed of Praseodymium Iron Boron (Pr{sub 2}Fe{sub 14}B) magnets (CR53, NEOMAX, Inc.) and vanadium permendur poles have been fabricated at Brookhaven National Laboratory. Unlike Neodymium Iron Boron (Nd{sub 2}Fe{sub 14}B) magnets which exhibit spin reorientation at a temperatures below 150 K, PrFeB arrays monotonically increase performance with lower operating temperature. It opens up the possibility for use in operating a cryo-permanent magnet undulator (CPMU) in the range of 40 K to 60 K where very efficient cryocoolers are available. Magnetic flux density profiles were measured at various temperature ranges from room temperature down tomore » liquid helium (LHe) using the Vertical Testing Facility (VTF) at the National Synchrotron Light Source-II (NSLS-II). Temperature variations of phase error have been characterized. In addition, we examined the use of textured Dysprosium (Dy) poles to replace permendur poles to obtain further improvement in performance.« less

Optimizing an undulating magnetic microswimmer for cargo towing

NASA Astrophysics Data System (ADS)

Or, Yizhar; Gutman, Emiliya

2015-11-01

One of the promising applications of robotic microswimmers is towing a cargo for controlled drug delivery, micro-surgery or tumor detection. This capability has been demonstrated by the magnetically-actuated microswimmer of Dreyfus et al. [Nature 2005] in which a red blood cell was attached to a chain of magnetic beads connected by flexible DNA links. A key question is what should be the optimal size of the magnetic tail for towing a given cargo. This question is addressed here for the simplest theoretical model of a magnetic microswimmer under planar undulations - a spherical load connected by a torsion spring to a magnetized rigid slender link. The swimmer's dynamics is formulated assuming negligible hydrodynamic interaction and leading-order expressions for the resulting motion are obtained explicitly under small amplitude approximation. Optimal combinations of magnetic actuation frequency, torsion stiffness, and tail length for maximizing displacement or average speed are obtained. The theoretical results are compared with several reported magnetic microswimmers, and also agree qualitatively with recent results on cargo towing by screw rotation of magnetic helical tails [Walker et al., ACS Nano Letters 2015]. This work is supported by the Israeli Science Foundation (ISF) under Grant No. 567/14.

GEOS 3 data processing for the recovery of geoid undulations and gravity anomalies

NASA Technical Reports Server (NTRS)

Rapp, R. H.

1979-01-01

The paper discusses the analysis of GEOS 3 altimeter data for the determination of geoid heights and point and mean gravity anomalies. Methods are presented for determining the mean anomalies and mean undulations from the GEOS 3 altimeter data available by the end of September 1977 without having a complete set of precise orbits. The editing of the data is extensive to remove questionable data, although no filtering of the data is carried out. An adjustment process is carried out to eliminate orbit error and altimeter bias. Representative point anomaly values are computed to investigate anomaly behavior across the Bonin Trench and over the Patton seamounts.

Orbit Correction for the Newly Developed Polarization-Switching Undulator

NASA Astrophysics Data System (ADS)

Obina, Takashi; Honda, Tohru; Shioya, Tatsuro; Kobayashi, Yukinori; Tsuchiya, Kimichika; Yamamoto, Shigeru

2007-01-01

A new scheme of undulator magnet arrangements has been proposed and developed as a polarization-switching radiation source, and its test-stand was installed in the 2.5-GeV Photon Factory storage ring (PF ring) in order to investigate the effects on the beam orbit. The closed orbit distortion (COD) over 200 μm was produced in a vertical direction when we switched the polarization of the radiation from the test-stand. In a horizontal direction, the COD was less than 50μm. The results agreed well with the predictions from the magnetic-field measurement on the bench. In order to suppress the CODs and realize a stable operation of the ring with the polarization-switching, we developed an orbit correction system which consists of an encoder to detect motion of magnets, a pair of beam position monitors (BPMs), signal processing parts, and a pair of steering magnets. We succeeded in suppressing the CODs to the level below 3μm using the system even when we switch the polarization at a maximum frequency of 0.8 Hz.

The onset of layer undulations in smectic A liquid crystals due to a strong magnetic field

NASA Astrophysics Data System (ADS)

Contreras, A.; Garcia-Azpeitia, C.; García-Cervera, C. J.; Joo, S.

2016-08-01

We investigate the effect of a strong magnetic field on a three dimensional smectic A liquid crystal. We identify a critical field above which the uniform layered state loses stability; this is associated to the onset of layer undulations. In a previous work García-Cervera and Joo (2012 Arch. Ration. Mech. Anal. 203 1-43), García-Cervera and Joo considered the two dimensional case and analyzed the transition to the undulated state via a simple bifurcation. In dimension n  =  3 the situation is more delicate because the first eigenvalue of the corresponding linearized problem is not simple. We overcome the difficulties inherent to this higher dimensional setting by identifying the irreducible representations for natural actions on the functional that take into account the invariances of the problem thus allowing for reducing the bifurcation analysis to a subspace with symmetries. We are able to describe at least two bifurcation branches, highlighting the richer landscape of energy critical states in the three dimensional setting. Finally, we analyze a reduced two dimensional problem, assuming the magnetic field is very strong, and are able to relate this to a model in micromagnetics studied in Alouges et al (2002 ESAIM Control Optim. Calc. Var. 8 31-68), from where we deduce the periodicity property of minimizers.

An SRRC elliptically polarizing undulator prototype to examine mechanical design feasibility and magnetic field performance.

PubMed

Chang, C H; Hwang, C S; Fan, T C; Chen, K H; Pan, K T; Lin, F Y; Wang, C; Chang, L H; Chen, H H; Lin, M C; Yeh, S

1998-05-01

In this work, a 1 m long Sasaki-type elliptically polarizing undulator (EPU) prototype with 5.6 cm period length is used to examine the mechanical design feasibility as well as magnetic field performance. The magnetic field characteristics of the EPU5.6 prototype at various phase shifts and gap motion are described. The field errors from mechanical tolerances, magnet block errors, end field effects and phase/gap motion effects are analysed. The procedures related to correcting the field with the block position tuning, iron shimming and the trim blocks at both ends are outlined.

Accuracy of the determination of mean anomalies and mean geoid undulations from a satellite gravity field mapping mission

NASA Technical Reports Server (NTRS)

Jekeli, C.; Rapp, R. H.

1980-01-01

Improved knowledge of the Earth's gravity field was obtained from new and improved satellite measurements such as satellite to satellite tracking and gradiometry. This improvement was examined by estimating the accuracy of the determination of mean anomalies and mean undulations in various size blocks based on an assumed mission. In this report the accuracy is considered through a commission error due to measurement noise propagation and a truncation error due to unobservable higher degree terms in the geopotential. To do this the spectrum of the measurement was related to the spectrum of the disturbing potential of the Earth's gravity field. Equations were derived for a low-low (radial or horizontal separation) mission and a gradiometer mission. For a low-low mission of six month's duration, at an altitude of 160 km, with a data noise of plus or minus 1 micrometers sec for a four second integration time, we would expect to determine 1 deg x 1 deg mean anomalies to an accuracy of plus or minus 2.3 mgals and 1 deg x 1 deg mean geoid undulations to plus or minus 4.3 cm. A very fast Fortran program is available to study various mission configurations and block sizes.

Thermo-mechanical analysis of a user filter assembly for undulator/wiggler operations at the Advanced Photon Source

DOE Office of Scientific and Technical Information (OSTI.GOV)

Nian, H.L.T.; Kuzay, T.M.; Collins, J.

1996-12-31

This paper reports a thermo-mechanical study of a beamline filter (user filter) for undulator/wiggler operations. It is deployed in conjunction with the current commissioning window assembly on the APS insertion device (ID) front ends. The beamline filter at the Advanced Photon Source (APS) will eventually be used in windowless operations also. Hence survival and reasonable life expectancy of the filters under intense insertion device (ID) heat flu are crucial to the beamline operations. To accommodate various user requirements, the filter is configured to be a multi-choice type and smart to allow only those filter combinations that will be safe tomore » operate with a given ring current and beamline insertion device gap. However, this paper addresses only the thermo-mechanical analysis of individual filter integrity and safety in all combinations possible. The current filter design is configured to have four filter frames in a cascade with each frame holding five filters. This allows a potential 625 total filter combinations. Thermal analysis for all of these combinations becomes a mammoth task considering the desired choices for filter materials (pyrolitic graphite and metallic filters), filter thicknesses, undulator gaps, and the beam currents. The paper addresses how this difficult task has been reduced to a reasonable effort and computational level. Results from thermo-mechanical analyses of the filter combinations are presented both in tabular and graphical format.« less

Experimental investigation of efficient locomotion of underwater snake robots for lateral undulation and eel-like motion patterns.

PubMed

Kelasidi, Eleni; Liljebäck, Pål; Pettersen, Kristin Y; Gravdahl, Jan T

2015-01-01

Underwater snake robots offer many interesting capabilities for underwater operations. The long and slender structure of such robots provide superior capabilities for access through narrow openings and within confined areas. This is interesting for inspection and monitoring operations, for instance within the subsea oil and gas industry and within marine archeology. In addition, underwater snake robots can provide both inspection and intervention capabilities and are thus interesting candidates for the next generation inspection and intervention AUVs. Furthermore, bioinspired locomotion through oscillatory gaits, like lateral undulation and eel-like motion, is interesting from an energy efficiency point of view. Increasing the motion efficiency in terms of the achieved forward speed by improving the method of propulsion is a key issue for underwater robots. Moreover, energy efficiency is one of the main challenges for long-term autonomy of these systems. In this study, we will consider both these two aspects of efficiency. This paper considers the energy efficiency of swimming snake robots by presenting and experimentally investigating fundamental properties of the velocity and the power consumption of an underwater snake robot for both lateral undulation and eel-like motion patterns. In particular, we investigate the relationship between the parameters of the gait patterns, the forward velocity and the energy consumption for different motion patterns. The simulation and experimental results are seen to support the theoretical findings.

Simulation and measurement of the electrostatic beam kicker in the low-energy undulator test line.

DOE Office of Scientific and Technical Information (OSTI.GOV)

Waldschmidt, G. J.

1998-10-27

An electrostatic kicker has been constructed for use in the Low-Energy Undulator Test Line (LEUTL) at the Advanced Photon Source (APS). The function of the kicker is to limit the amount of beam current to be accelerated by the APS linac. Two electrodes within the kicker create an electric field that adjusts the trajectory of the beam. This paper will explore the static fields that are set up between the offset electrode plates and determine the reaction of the beam to this field. The kicker was numerically simulated using the electromagnetic solver package MAFIA [1].

Ellipsoidal corrections for geoid undulation computations using gravity anomalies in a cap

NASA Technical Reports Server (NTRS)

Rapp, R. H.

1981-01-01

Ellipsoidal correction terms have been derived for geoid undulation computations when the Stokes equation using gravity anomalies in a cap is combined with potential coefficient information. The correction terms are long wavelength and depend on the cap size in which its gravity anomalies are given. Using the regular Stokes equation, the maximum correction for a cap size of 20 deg is -33 cm, which reduces to -27 cm when the Stokes function is modified by subtracting the value of the Stokes function at the cap radius. Ellipsoidal correction terms were also derived for the well-known Marsh/Chang geoids. When no gravity was used, the correction could reach 101 cm, while for a cap size of 20 deg the maximum correction was -45 cm. Global correction maps are given for a number of different cases. For work requiring accurate geoid computations these correction terms should be applied.

Structures of riboswitch RNA reaction states by mix-and-inject XFEL serial crystallography

NASA Astrophysics Data System (ADS)

Stagno, J. R.; Liu, Y.; Bhandari, Y. R.; Conrad, C. E.; Panja, S.; Swain, M.; Fan, L.; Nelson, G.; Li, C.; Wendel, D. R.; White, T. A.; Coe, J. D.; Wiedorn, M. O.; Knoska, J.; Oberthuer, D.; Tuckey, R. A.; Yu, P.; Dyba, M.; Tarasov, S. G.; Weierstall, U.; Grant, T. D.; Schwieters, C. D.; Zhang, J.; Ferré-D'Amaré, A. R.; Fromme, P.; Draper, D. E.; Liang, M.; Hunter, M. S.; Boutet, S.; Tan, K.; Zuo, X.; Ji, X.; Barty, A.; Zatsepin, N. A.; Chapman, H. N.; Spence, J. C. H.; Woodson, S. A.; Wang, Y.-X.

2017-01-01

Riboswitches are structural RNA elements that are generally located in the 5‧ untranslated region of messenger RNA. During regulation of gene expression, ligand binding to the aptamer domain of a riboswitch triggers a signal to the downstream expression platform. A complete understanding of the structural basis of this mechanism requires the ability to study structural changes over time. Here we use femtosecond X-ray free electron laser (XFEL) pulses to obtain structural measurements from crystals so small that diffusion of a ligand can be timed to initiate a reaction before diffraction. We demonstrate this approach by determining four structures of the adenine riboswitch aptamer domain during the course of a reaction, involving two unbound apo structures, one ligand-bound intermediate, and the final ligand-bound conformation. These structures support a reaction mechanism model with at least four states and illustrate the structural basis of signal transmission. The three-way junction and the P1 switch helix of the two apo conformers are notably different from those in the ligand-bound conformation. Our time-resolved crystallographic measurements with a 10-second delay captured the structure of an intermediate with changes in the binding pocket that accommodate the ligand. With at least a 10-minute delay, the RNA molecules were fully converted to the ligand-bound state, in which the substantial conformational changes resulted in conversion of the space group. Such notable changes in crystallo highlight the important opportunities that micro- and nanocrystals may offer in these and similar time-resolved diffraction studies. Together, these results demonstrate the potential of ‘mix-and-inject’ time-resolved serial crystallography to study biochemically important interactions between biomacromolecules and ligands, including those that involve large conformational changes.

Structures of riboswitch RNA reaction states by mix-and-inject XFEL serial crystallography

PubMed Central

Stagno, J. R.; Liu, Y.; Bhandari, Y. R.; Conrad, C. E.; Panja, S.; Swain, M.; Fan, L.; Nelson, G.; Li, C.; Wendel, D. R.; White, T. A.; Coe, J. D.; Wiedorn, M. O.; Knoska, J.; Oberthuer, D.; Tuckey, R. A.; Yu, P.; Dyba, M.; Tarasov, S. G.; Weierstall, U.; Grant, T. D.; Schwieters, C. D.; Zhang, J.; Ferré-D’Amaré, A. R.; Fromme, P.; Draper, D. E.; Liang, M.; Hunter, M. S.; Boutet, S.; Tan, K.; Zuo, X.; Ji, X.; Barty, A.; Zatsepin, N. A.; Chapman, H. N.; Spence, J. C. H.; Woodson, S. A.; Wang, Y.-X.

2017-01-01

Riboswitches are structural RNA elements that are generally located in the 5′ untranslated region of messenger RNA. During regulation of gene expression, ligand binding to the aptamer domain of a riboswitch triggers a signal to the downstream expression platform1–3. A complete understanding of the structural basis of this mechanism requires the ability to study structural changes over time4. Here we use femtosecond X-ray free electron laser (XFEL) pulses5,6 to obtain structural measurements from crystals so small that diffusion of a ligand can be timed to initiate a reaction before diffraction. We demonstrate this approach by determining four structures of the adenine riboswitch aptamer domain during the course of a reaction, involving two unbound apo structures, one ligand-bound intermediate, and the final ligand-bound conformation. These structures support a reaction mechanism model with at least four states and illustrate the structural basis of signal transmission. The three-way junction and the P1 switch helix of the two apo conformers are notably different from those in the ligand-bound conformation. Our time-resolved crystallographic measurements with a 10-second delay captured the structure of an intermediate with changes in the binding pocket that accommodate the ligand. With at least a 10-minute delay, the RNA molecules were fully converted to the ligand-bound state, in which the substantial conformational changes resulted in conversion of the space group. Such notable changes in crystallo highlight the important opportunities that micro- and nanocrystals may offer in these and similar time-resolved diffraction studies. Together, these results demonstrate the potential of ‘mix-and-inject’ time-resolved serial crystallography to study biochemically important interactions between biomacromolecules and ligands, including those that involve large conformational changes. PMID:27841871

The prediction and mapping of geoidal undulations from GEOS-3 altimetry. [gravity anomalies

NASA Technical Reports Server (NTRS)

Kearsley, W.

1978-01-01

From the adjusted altimeter data an approximation to the geoid height in ocean areas is obtained. Methods are developed to produce geoid maps in these areas. Geoid heights are obtained for grid points in the region to be mapped, and two of the parameters critical to the production of an accurate map are investigated. These are the spacing of the grid, which must be related to the half-wavelength of the altimeter signal whose amplitude is the desired accuracy of the contour; and the method adopted to predict the grid values. Least squares collocation was used to find geoid undulations on a 1 deg grid in the mapping area. Twenty maps, with their associated precisions, were produced and are included. These maps cover the Indian Ocean, Southwestern and Northeastern portions of the Pacific Ocean, and Southwest Atlantic and the U.S. Calibration Area.

OPERATIONAL EXPERIENCE WITH BEAM ABORT SYSTEM FOR SUPERCONDUCTING UNDULATOR QUENCH MITIGATION*

DOE Office of Scientific and Technical Information (OSTI.GOV)

Harkay, Katherine C.; Dooling, Jeffrey C.; Sajaev, Vadim

A beam abort system has been implemented in the Advanced Photon Source storage ring. The abort system works in tandem with the existing machine protection system (MPS), and its purpose is to control the beam loss location and, thereby, minimize beam loss-induced quenches at the two superconducting undulators (SCUs). The abort system consists of a dedicated horizontal kicker designed to kick out all the bunches in a few turns after being triggered by MPS. The abort system concept was developed on the basis of single- and multi-particle tracking simulations using elegant and bench measurements of the kicker pulse. Performance ofmore » the abort system—kick amplitudes and loss distributions of all bunches—was analyzed using beam position monitor (BPM) turn histories, and agrees reasonably well with the model. Beam loss locations indicated by the BPMs are consistent with the fast fiber-optic beam loss monitor (BLM) diagnostics described elsewhere [1,2]. Operational experience with the abort system, various issues that were encountered, limitations of the system, and quench statistics are described.« less

Evaluation of bending modulus of lipid bilayers using undulation and orientation analysis

NASA Astrophysics Data System (ADS)

Chaurasia, Adarsh K.; Rukangu, Andrew M.; Philen, Michael K.; Seidel, Gary D.; Freeman, Eric C.

2018-03-01

In the current paper, phospholipid bilayers are modeled using coarse-grained molecular dynamics simulations with the MARTINI force field. The extracted molecular trajectories are analyzed using Fourier analysis of the undulations and orientation vectors to establish the differences between the two approaches for evaluating the bending modulus. The current work evaluates and extends the implementation of the Fourier analysis for molecular trajectories using a weighted horizon-based averaging approach. The effect of numerical parameters in the analysis of these trajectories is explored by conducting parametric studies. Computational modeling results are validated against experimentally characterized bending modulus of lipid membranes using a shape fluctuation analysis. The computational framework is then used to estimate the bending moduli for different types of lipids (phosphocholine, phosphoethanolamine, and phosphoglycerol). This work provides greater insight into the numerical aspects of evaluating the bilayer bending modulus, provides validation for the orientation analysis technique, and explores differences in bending moduli based on differences in the lipid nanostructures.

Stiffening of fluid membranes due to thermal undulations: density-matrix renormalization-group study.

PubMed

Nishiyama, Yoshihiro

2002-12-01

It has been considered that the effective bending rigidity of fluid membranes should be reduced by thermal undulations. However, recent thorough investigation by Pinnow and Helfrich revealed the significance of measure factors for the partition sum. Accepting the local curvature as a statistical measure, they found that fluid membranes are stiffened macroscopically. In order to examine this remarkable idea, we performed extensive ab initio simulations for a fluid membrane. We set up a transfer matrix that is diagonalized by means of the density-matrix renormalization group. Our method has an advantage, in that it allows us to survey various statistical measures. As a consequence, we found that the effective bending rigidity flows toward strong coupling under the choice of local curvature as a statistical measure. On the contrary, for other measures such as normal displacement and tilt angle, we found a clear tendency toward softening.

Long wavelength undulations dominate dynamics in large surfactant membrane patches

DOE Office of Scientific and Technical Information (OSTI.GOV)

Lipfert, Frederik; Holderer, Olaf; Frielinghaus, Henrich

2014-12-03

In this study, by exposing microemulsions to small (80 nm diameter) and large (500 nm) disk shaped clay particles we were able to show the presence of long wavelength undulations that only occur for large membrane patches. A combination of small angle neutron scattering (SANS) and neutron spin echo (NSE) experiments have been applied to study microemulsions. These, consisting of D 2O, d-decane and the surfactant C 10E 4, were used in connection with Laponite (small) and Nanofil (large) clay. To our knowledge our experiments show for the first time that the clay platelets induce lamellar ordering adjacent to themore » clay discs in the otherwise bicontinuous microemulsion. This is due to the fact that in purely structural investigations, radial averaging smears out the signature of the lamellar phase. For thermodynamically fluctuating membranes near interfaces the theory of Seifert predicts a cross-over of the dispersion relationship from k 2 to a k 3-dependence. Lastly, with the correlation length of the membrane patches being confined by the dimension of the clay platelets we were able to show that this in fact takes place but is only present for the larger Nanofil particles.« less

Science Driven Instrumentation for LCLS-II

DOE Office of Scientific and Technical Information (OSTI.GOV)

Arthur, John; Bergmann, Uwe; Brunger, Axel

The world’s first x-ray free electron laser (XFEL), LCLS, has now been operating for more than three years and all six experimental stations are supporting user science and producing high impact scientific results. Other countries are rapidly catching up and a second XFEL, SACLA, is already operating in Japan with others coming on line in Germany, Korea and Switzerland within the next three to five years. In order to increase capability and capacity of LCLS, the Department of Energy has funded LCLS-II.

Reversible beam heater for suppression of microbunching instability by transverse gradient undulators

NASA Astrophysics Data System (ADS)

Liu, Tao; Qin, Weilun; Wang, Dong; Huang, Zhirong

2017-08-01

The microbunching instability driven by beam collective effects in a linear accelerator of a free-electron laser (FEL) facility significantly degrades the electron beam quality and FEL performance. A conventional method to suppress this instability is to introduce an additional uncorrelated energy spread by laser-electron interaction, which has been successfully operated in the Linac Coherent Light Source and Fermi@Elettra, etc. Some other ideas are recently proposed to suppress the instability without increasing energy spread, which could benefit the seeded FEL schemes. In this paper, we propose a reversible electron beam heater using two transverse gradient undulators to suppress the microbunching instability. This scheme introduces both an energy spread increase and a transverse-to-longitudinal phase space coupling, which suppress the microbunching instabilities driven by both longitudinal space charge and coherent synchrotron radiation before and within the system. Finally the induced energy spread increase and emittance growth are reversed. Theoretical analysis and numerical simulations are presented to verify the feasibility of the scheme and indicate the capability to improve the seeded FEL radiation performance.

Reversible beam heater for suppression of microbunching instability by transverse gradient undulators

DOE PAGES

Liu, Tao; Qin, Weilun; Wang, Dong; ...

2017-08-02

The microbunching instability driven by beam collective effects in a linear accelerator of a free-electron laser (FEL) facility significantly degrades the electron beam quality and FEL performance. A conventional method to suppress this instability is to introduce an additional uncorrelated energy spread by laser-electron interaction, which has been successfully operated in the Linac Coherent Light Source and Fermi@Elettra, etc. Some other ideas are recently proposed to suppress the instability without increasing energy spread, which could benefit the seeded FEL schemes. In this paper, we propose a reversible electron beam heater using two transverse gradient undulators to suppress the microbunching instability.more » This scheme introduces both an energy spread increase and a transverse-to-longitudinal phase space coupling, which suppress the microbunching instabilities driven by both longitudinal space charge and coherent synchrotron radiation before and within the system. Finally the induced energy spread increase and emittance growth are reversed. In conclusion, theoretical analysis and numerical simulations are presented to verify the feasibility of the scheme and indicate the capability to improve the seeded FEL radiation performance.« less

Compact beam transport system for free-electron lasers driven by a laser plasma accelerator

DOE PAGES

Liu, Tao; Zhang, Tong; Wang, Dong; ...

2017-02-01

Utilizing laser-driven plasma accelerators (LPAs) as a high-quality electron beam source is a promising approach to significantly downsize the x-ray free-electron laser (XFEL) facility. A multi-GeV LPA beam can be generated in several-centimeter acceleration distance, with a high peak current and a low transverse emittance, which will considerably benefit a compact FEL design. However, the large initial angular divergence and energy spread make it challenging to transport the beam and realize FEL radiation. In this paper, a novel design of beam transport system is proposed to maintain the superior features of the LPA beam and a transverse gradient undulator (TGU)more » is also adopted as an effective energy spread compensator to generate high-brilliance FEL radiation. As a result, theoretical analysis and numerical simulations are presented based on a demonstration experiment with an electron energy of 380 MeV and a radiation wavelength of 30 nm.« less

BioCARS: a synchrotron resource for time-resolved X-ray science

DOE Office of Scientific and Technical Information (OSTI.GOV)

Graber, T.; Anderson, S.; Brewer, H.

2011-08-16

BioCARS, a NIH-supported national user facility for macromolecular time-resolved X-ray crystallography at the Advanced Photon Source (APS), has recently completed commissioning of an upgraded undulator-based beamline optimized for single-shot laser-pump X-ray-probe measurements with time resolution as short as 100 ps. The source consists of two in-line undulators with periods of 23 and 27 mm that together provide high-flux pink-beam capability at 12 keV as well as first-harmonic coverage from 6.8 to 19 keV. A high-heat-load chopper reduces the average power load on downstream components, thereby preserving the surface figure of a Kirkpatrick-Baez mirror system capable of focusing the X-ray beammore » to a spot size of 90 {micro}m horizontal by 20 {micro}m vertical. A high-speed chopper isolates single X-ray pulses at 1 kHz in both hybrid and 24-bunch modes of the APS storage ring. In hybrid mode each isolated X-ray pulse delivers up to {approx}4 x 10{sup 10} photons to the sample, thereby achieving a time-averaged flux approaching that of fourth-generation X-FEL sources. A new high-power picosecond laser system delivers pulses tunable over the wavelength range 450-2000 nm. These pulses are synchronized to the storage-ring RF clock with long-term stability better than 10 ps RMS. Monochromatic experimental capability with Biosafety Level 3 certification has been retained.« less

Gravity anomaly and geoid undulation results in local areas from GEOS-3 altimeter data

NASA Technical Reports Server (NTRS)

Rapp, R. H.

1979-01-01

The adjusted GEOS-3 altimeter data, taken as averages within a data frame, have been used to construct free air anomaly and geoid undulation profiles and maps in areas of geophysical interest. Profiles were constructed across the Philippine Trench (at a latitude of 6 deg) and across the Bonin Trench (at a latitude of 28 deg). In the latter case an anomaly variation of 443 mgals in 143 km was derived from the altimeter data. These variations agreed reasonably with terrestrial estimates, considering the predicted point accuracy was about + or - 27 mgals. An area over the Patton Sea mounts was also investigated with the altimeter anomaly field agreeing well with the terrestrial data except for the point directly over the top of the sea mount. It is concluded that the GEOS-3 altimeter data is valuable not only for determining 5 deg and 1 deg x 1 deg mean anomalies, but also can be used to describe more local anomaly variations.

A compact tunable polarized X-ray source based on laser-plasma helical undulators

PubMed Central

Luo, J.; Chen, M.; Zeng, M.; Vieira, J.; Yu, L. L.; Weng, S. M.; Silva, L. O.; Jaroszynski, D. A.; Sheng, Z. M.; Zhang, J.

2016-01-01

Laser wakefield accelerators have great potential as the basis for next generation compact radiation sources because of their extremely high accelerating gradients. However, X-ray radiation from such devices still lacks tunability, especially of the intensity and polarization distributions. Here we propose a tunable polarized radiation source based on a helical plasma undulator in a plasma channel guided wakefield accelerator. When a laser pulse is initially incident with a skew angle relative to the channel axis, the laser and accelerated electrons experience collective spiral motions, which leads to elliptically polarized synchrotron-like radiation with flexible tunability on radiation intensity, spectra and polarization. We demonstrate that a radiation source with millimeter size and peak brilliance of 2 × 1019 photons/s/mm2/mrad2/0.1% bandwidth can be made with moderate laser and electron beam parameters. This brilliance is comparable with third generation synchrotron radiation facilities running at similar photon energies, suggesting that laser plasma based radiation sources are promising for advanced applications. PMID:27377126

Comparison of Achievable Magnetic Fields with Superconducting and Cryogenic Permanent Magnet Undulators – A Comprehensive Study of Computed and Measured Values

DOE Office of Scientific and Technical Information (OSTI.GOV)

Moog, E. R.; Dejus, R. J.; Sasaki, S.

2017-01-01

Magnetic modeling was performed to estimate achievable magnetic field strengths of superconducting undulators (SCUs) and to compare them with those of cryogenically cooled permanent magnet undulators (CPMUs). Starting with vacuum (beam stay-clear) gaps of 4.0 and 6.0 mm, realistic allowances for beam chambers (in the SCU case) and beam liners (in the CPMU case) were added. (A 6.0-mm vacuum gap is planned for the upgraded APS). The CPMU magnetic models consider both CPMUs that use NdFeB magnets at ~150 K and PrFeB magnets at 77 K. Parameters of the magnetic models are presented along with fitted coefficients of a Halbach-typemore » expression for the field dependence on the gap-to-period ratio. Field strengths for SCUs are estimated using a scaling law for planar SCUs; an equation for that is given. The SCUs provide higher magnetic fields than the highest-field CPMUs – those using PrFeB at 77 K – for period lengths longer than ~14 mm for NbTi-based SCUs and ~10 mm for Nb3Sn-based SCUs. To show that the model calculations and scaling law results are realistic, they are compared to CPMUs that have been built and NbTi-based SCUs that have been built. Brightness tuning curves of CPMUs (PrFeB) and SCUs (NbTi) for the upgraded APS lattice are also provided for realistic period lengths.« less

Analysis of multibunch free electron laser operation

NASA Astrophysics Data System (ADS)

Hellert, Thorsten; Decking, Winfried; Branlard, Julien

2017-09-01

At the SASE-FEL user facilities FLASH and European XFEL, superconducting TESLA type cavities are used for acceleration of the driving electron bunches. The high achievable duty cycle allows for operating with long bunch trains, hence considerably increasing the efficiency of the machine. However, multibunch free electron lasers (FEL) operation requires longitudinal and transverse stability within the bunch train. The purpose of this work is to investigate the intra-bunch-train transverse dynamics at FLASH and European XFEL. Key relationships of superconducting rf cavity operation and the resulting impact on the intrabunch-train trajectory variation are described. The observed trajectory variation during multibunch user runs at FLASH is analyzed and related to both, intrabunch-train variations of the rf and the following impact on the multibunch FEL performance.

BioCARS: a synchrotron resource for time-resolved X-ray science

PubMed Central

Graber, T.; Anderson, S.; Brewer, H.; Chen, Y.-S.; Cho, H. S.; Dashdorj, N.; Henning, R. W.; Kosheleva, I.; Macha, G.; Meron, M.; Pahl, R.; Ren, Z.; Ruan, S.; Schotte, F.; Šrajer, V.; Viccaro, P. J.; Westferro, F.; Anfinrud, P.; Moffat, K.

2011-01-01

BioCARS, a NIH-supported national user facility for macromolecular time-resolved X-ray crystallography at the Advanced Photon Source (APS), has recently completed commissioning of an upgraded undulator-based beamline optimized for single-shot laser-pump X-ray-probe measurements with time resolution as short as 100 ps. The source consists of two in-line undulators with periods of 23 and 27 mm that together provide high-flux pink-beam capability at 12 keV as well as first-harmonic coverage from 6.8 to 19 keV. A high-heat-load chopper reduces the average power load on downstream components, thereby preserving the surface figure of a Kirkpatrick–Baez mirror system capable of focusing the X-ray beam to a spot size of 90 µm horizontal by 20 µm vertical. A high-speed chopper isolates single X-ray pulses at 1 kHz in both hybrid and 24-bunch modes of the APS storage ring. In hybrid mode each isolated X-ray pulse delivers up to ∼4 × 1010 photons to the sample, thereby achieving a time-averaged flux approaching that of fourth-generation X-FEL sources. A new high-power picosecond laser system delivers pulses tunable over the wavelength range 450–2000 nm. These pulses are synchronized to the storage-ring RF clock with long-term stability better than 10 ps RMS. Monochromatic experimental capability with Biosafety Level 3 certification has been retained. PMID:21685684

Geoid undulations and gravity anomalies over the Aral Sea, the Black Sea and the Caspian Sea from a combined GEOS-3/SEASAT/GEOSAT altimeter data set

NASA Technical Reports Server (NTRS)

Au, Andrew Y.; Brown, Richard D.; Welker, Jean E.

1991-01-01

Satellite-based altimetric data taken by GOES-3, SEASAT, and GEOSAT over the Aral Sea, the Black Sea, and the Caspian Sea are analyzed and a least squares collocation technique is used to predict the geoid undulations on a 0.25x0.25 deg. grid and to transform these geoid undulations to free air gravity anomalies. Rapp's 180x180 geopotential model is used as the reference surface for the collocation procedure. The result of geoid to gravity transformation is, however, sensitive to the information content of the reference geopotential model used. For example, considerable detailed surface gravity data were incorporated into the reference model over the Black Sea, resulting in a reference model with significant information content at short wavelengths. Thus, estimation of short wavelength gravity anomalies from gridded geoid heights is generally reliable over regions such as the Black Sea, using the conventional collocation technique with local empirical covariance functions. Over regions such as the Caspian Sea, where detailed surface data are generally not incorporated into the reference model, unconventional techniques are needed to obtain reliable gravity anomalies. Based on the predicted gravity anomalies over these inland seas, speculative tectonic structures are identified and geophysical processes are inferred.

Jet impact on a soap film

NASA Astrophysics Data System (ADS)

Kirstetter, Geoffroy; Raufaste, Christophe; Celestini, Franck

2012-09-01

We experimentally investigate the impact of a liquid jet on a soap film. We observe that the jet never breaks the film and that two qualitatively different steady regimes may occur. The first one is a refractionlike behavior obtained at small incidence angles when the jet crosses the film and is deflected by the film-jet interaction. For larger incidence angles, the jet is absorbed by the film, giving rise to a new class of flows in which the jet undulates along the film with a characteristic wavelength. Besides its fundamental interest, this paper presents a different way to guide a micrometric flow of liquid in the inertial regime and to probe foam stability submitted to violent perturbations at the soap film scale.

Jet impact on a soap film.

PubMed

Kirstetter, Geoffroy; Raufaste, Christophe; Celestini, Franck

2012-09-01

We experimentally investigate the impact of a liquid jet on a soap film. We observe that the jet never breaks the film and that two qualitatively different steady regimes may occur. The first one is a refractionlike behavior obtained at small incidence angles when the jet crosses the film and is deflected by the film-jet interaction. For larger incidence angles, the jet is absorbed by the film, giving rise to a new class of flows in which the jet undulates along the film with a characteristic wavelength. Besides its fundamental interest, this paper presents a different way to guide a micrometric flow of liquid in the inertial regime and to probe foam stability submitted to violent perturbations at the soap film scale.

Evaluation of GOCE-based global gravity field models over Japan after the full mission using free-air gravity anomalies and geoid undulations

NASA Astrophysics Data System (ADS)

Odera, Patroba Achola; Fukuda, Yoichi

2017-09-01

The performance of Gravity field and steady-state Ocean Circulation Explorer (GOCE) global gravity field models (GGMs), at the end of GOCE mission covering 42 months, is evaluated using geoid undulations and free-air gravity anomalies over Japan, including six sub-regions (Hokkaido, north Honshu, central Honshu, west Honshu, Shikoku and Kyushu). Seventeen GOCE-based GGMs are evaluated and compared with EGM2008. The evaluations are carried out at 150, 180, 210, 240 and 270 spherical harmonics degrees. Results show that EGM2008 performs better than GOCE and related GGMs in Japan and three sub-regions (Hokkaido, central Honshu and Kyushu). However, GOCE and related GGMs perform better than EGM2008 in north Honshu, west Honshu and Shikoku up to degree 240. This means that GOCE data can improve geoid model over half of Japan. The improvement is only evident between degrees 150 and 240 beyond which EGM2008 performs better than GOCE GGMs in all the six regions. In general, the latest GOCE GGMs (releases 4 and 5) perform better than the earlier GOCE GGMs (releases 1, 2 and 3), indicating the contribution of data collected by GOCE in the last months before the mission ended on 11 November 2013. The results indicate that a more accurate geoid model over Japan is achievable, based on a combination of GOCE, EGM2008 and terrestrial gravity data sets. [Figure not available: see fulltext. Caption: Standard deviations of the differences between observed and GGMs implied ( a) free-air gravity anomalies over Japan, ( b) geoid undulations over Japan. n represents the spherical harmonic degrees

Analyzing the Broken Ridge area of the Indian Ocean using magnetic and gravity anomaly maps and geoid undulation and bathymetry data

NASA Technical Reports Server (NTRS)

Lazarewicz, A. R.; Sailor, R. V. (Principal Investigator)

1982-01-01

A higher resolution anomaly map of the Broken Ridge area (2 degree dipole spacing) was produced and reduced to the pole using quiet time data for this area. The map was compared with equally scaled maps of gravity anomaly, geoid undulation, and bathymetry. The ESMAP results were compared with a NASA MAGSAT map derived by averaging data in two-degree bins. A survey simulation was developed to model the accuracy of MAGSAT anomaly maps as a function of satellite altitude, instrument noise level, external noise model, and crustal anomaly field model. A preliminary analysis of the geophysical structure of Broken Ridge is presented and unresolved questions are listed.

Installation of Multiple Application X-ray Imaging Undulator Microscope (MAXIMUM) at ALS: Final report, 8/15/95-8/15/96

DOE Office of Scientific and Technical Information (OSTI.GOV)

NONE

1996-12-31

MAXIMUM is short for Multiple Application X-ray IMaging Undulator Microscope, a project started in 1988 by our group at the Synchrotron Radiation Center of the University of Wisconsin-Madison. It is a scanning x-ray photoemission microscope that uses a multilayer-coated Schwarzschild objective as the focusing element. It was designed primarily for materials science studies of lateral variations in surface chemistry. Suitable problems include: lateral inhomogeneities in Schottky barrier formation, heterojunction formation, patterned samples and devices, insulating samples. Any system which has interesting properties that are not uniform as a function of spatial dimension can potentially be studied with MAXIMUM. 6 figs.,more » 3 tabs.« less

XFEL structures of the influenza M2 proton channel: Room temperature water networks and insights into proton conduction

DOE PAGES

Thomaston, Jessica L.; Woldeyes, Rahel A.; Nakane, Takanori; ...

2017-08-23

The M2 proton channel of influenza A is a drug target that is essential for the reproduction of the flu virus. It is also a model system for the study of selective, unidirectional proton transport across a membrane. Ordered water molecules arranged in “wires” inside the channel pore have been proposed to play a role in both the conduction of protons to the four gating His37 residues and the stabilization of multiple positive charges within the channel. To visualize the solvent in the pore of the channel at room temperature while minimizing the effects of radiation damage, data were collectedmore » to a resolution of 1.4 Å using an X-ray free-electron laser (XFEL) at three different pH conditions: pH 5.5, pH 6.5, and pH 8.0. Data were collected on the Inward open state, which is an intermediate that accumulates at high protonation of the His37 tetrad. At pH 5.5, a continuous hydrogen-bonded network of water molecules spans the vertical length of the channel, consistent with a Grotthuss mechanism model for proton transport to the His37 tetrad. This ordered solvent at pH 5.5 could act to stabilize the positive charges that build up on the gating His37 tetrad during the proton conduction cycle. The number of ordered pore waters decreases at pH 6.5 and 8.0, where the Inward open state is less stable. Furthermore, these studies provide a graphical view of the response of water to a change in charge within a restricted channel environment.« less

XFEL structures of the influenza M2 proton channel: Room temperature water networks and insights into proton conduction

DOE Office of Scientific and Technical Information (OSTI.GOV)

Thomaston, Jessica L.; Woldeyes, Rahel A.; Nakane, Takanori

The M2 proton channel of influenza A is a drug target that is essential for the reproduction of the flu virus. It is also a model system for the study of selective, unidirectional proton transport across a membrane. Ordered water molecules arranged in “wires” inside the channel pore have been proposed to play a role in both the conduction of protons to the four gating His37 residues and the stabilization of multiple positive charges within the channel. To visualize the solvent in the pore of the channel at room temperature while minimizing the effects of radiation damage, data were collectedmore » to a resolution of 1.4 Å using an X-ray free-electron laser (XFEL) at three different pH conditions: pH 5.5, pH 6.5, and pH 8.0. Data were collected on the Inward open state, which is an intermediate that accumulates at high protonation of the His37 tetrad. At pH 5.5, a continuous hydrogen-bonded network of water molecules spans the vertical length of the channel, consistent with a Grotthuss mechanism model for proton transport to the His37 tetrad. This ordered solvent at pH 5.5 could act to stabilize the positive charges that build up on the gating His37 tetrad during the proton conduction cycle. The number of ordered pore waters decreases at pH 6.5 and 8.0, where the Inward open state is less stable. Furthermore, these studies provide a graphical view of the response of water to a change in charge within a restricted channel environment.« less

Air entrapment under an impacting drop

NASA Astrophysics Data System (ADS)

Thoroddsen, S. T.; Etoh, T. G.; Takehara, K.

2003-03-01

When a drop impacts on a liquid surface it entraps a small amount of air under its centre as the two liquid surfaces meet. The contact occurs along a ring enclosing a thin disk of air. We use the next-generation ultra-high-speed video camera, capable of 1 million f.p.s. (Etoh et al. 2002), to study the dynamics of this air sheet as it contracts due to surface tension, to form a bubble or, more frequently, splits into two bubbles. During the contraction of the air disk an azimuthal undulation, resembling a pearl necklace, develops along its edge. The contraction speed of the sheet is accurately described by a balance between inertia and surface tension. The average initial thickness of the air sheet decreases with higher impact Reynolds numbers, becoming less than one micron. The total volume of air entrapped depends strongly on the bottom curvature of the drop at impact. A sheet of micro-bubbles is often observed along the original interface. Oguz Prosperetti bubble rings are also observed. For low Weber numbers (We<20) a variety of other entrapment phenomena appear.

Enabling X-ray free electron laser crystallography for challenging biological systems from a limited number of crystals

PubMed Central

Uervirojnangkoorn, Monarin; Zeldin, Oliver B; Lyubimov, Artem Y; Hattne, Johan; Brewster, Aaron S; Sauter, Nicholas K; Brunger, Axel T; Weis, William I

2015-01-01

There is considerable potential for X-ray free electron lasers (XFELs) to enable determination of macromolecular crystal structures that are difficult to solve using current synchrotron sources. Prior XFEL studies often involved the collection of thousands to millions of diffraction images, in part due to limitations of data processing methods. We implemented a data processing system based on classical post-refinement techniques, adapted to specific properties of XFEL diffraction data. When applied to XFEL data from three different proteins collected using various sample delivery systems and XFEL beam parameters, our method improved the quality of the diffraction data as well as the resulting refined atomic models and electron density maps. Moreover, the number of observations for a reflection necessary to assemble an accurate data set could be reduced to a few observations. These developments will help expand the applicability of XFEL crystallography to challenging biological systems, including cases where sample is limited. DOI: http://dx.doi.org/10.7554/eLife.05421.001 PMID:25781634

Enabling X-ray free electron laser crystallography for challenging biological systems from a limited number of crystals

DOE PAGES

Uervirojnangkoorn, Monarin; Zeldin, Oliver B.; Lyubimov, Artem Y.; ...

2015-03-17

There is considerable potential for X-ray free electron lasers (XFELs) to enable determination of macromolecular crystal structures that are difficult to solve using current synchrotron sources. Prior XFEL studies often involved the collection of thousands to millions of diffraction images, in part due to limitations of data processing methods. We implemented a data processing system based on classical post-refinement techniques, adapted to specific properties of XFEL diffraction data. When applied to XFEL data from three different proteins collected using various sample delivery systems and XFEL beam parameters, our method improved the quality of the diffraction data as well as themore » resulting refined atomic models and electron density maps. Moreover, the number of observations for a reflection necessary to assemble an accurate data set could be reduced to a few observations. In conclusion, these developments will help expand the applicability of XFEL crystallography to challenging biological systems, including cases where sample is limited.« less

Enabling X-ray free electron laser crystallography for challenging biological systems from a limited number of crystals

DOE PAGES

Uervirojnangkoorn, Monarin; Zeldin, Oliver B.; Lyubimov, Artem Y.; ...

2015-03-17

There is considerable potential for X-ray free electron lasers (XFELs) to enable determination of macromolecular crystal structures that are difficult to solve using current synchrotron sources. Prior XFEL studies often involved the collection of thousands to millions of diffraction images, in part due to limitations of data processing methods. We implemented a data processing system based on classical post-refinement techniques, adapted to specific properties of XFEL diffraction data. When applied to XFEL data from three different proteins collected using various sample delivery systems and XFEL beam parameters, our method improved the quality of the diffraction data as well as themore » resulting refined atomic models and electron density maps. Moreover, the number of observations for a reflection necessary to assemble an accurate data set could be reduced to a few observations. These developments will help expand the applicability of XFEL crystallography to challenging biological systems, including cases where sample is limited.« less

Time-dependent wave front propagation simulation of a hard x-ray split-and-delay unit: Towards a measurement of the temporal coherence properties of x-ray free electron lasers

DOE PAGES

Roling, S.; Zacharias, H.; Samoylova, L.; ...

2014-11-18

For the European x-ray free electron laser (XFEL) a split-and-delay unit based on geometrical wavefront beam splitting and multilayer mirrors is built which covers the range of photon energies from 5 keV up to 20 keV. Maximum delays between Δτ = ±2.5 ps at hν=20 keV and up to Δτ = ±23 ps at hν = 5 keV will be possible. Time-dependent wave-optics simulations have been performed by means of Synchrotron Radiation Workshop software for XFEL pulses at hν = 5 keV. The XFEL radiation was simulated using results of time-dependent simulations applying the self-amplified spontaneous emission code FAST. Mainmore » features of the optical layout, including diffraction on the beam splitter edge and optics imperfections measured with a nanometer optic component measuring machine slope measuring profiler, were taken into account. The impact of these effects on the characterization of the temporal properties of XFEL pulses is analyzed. An approach based on fast Fourier transformation allows for the evaluation of the temporal coherence despite large wavefront distortions caused by the optics imperfections. In this manner, the fringes resulting from time-dependent two-beam interference can be filtered and evaluated yielding a coherence time of τ c = 0.187 fs (HWHM) for real, nonperfect mirrors, while for ideal mirrors a coherence time of τ c = 0.191 fs (HWHM) is expected.« less

A method for ultra-short pulse-shape measurements using far infrared coherent radiation from an undulator

NASA Astrophysics Data System (ADS)

Geloni, G.; Saldin, E. L.; Schneidmiller, E. A.; Yurkov, M. V.

2004-08-01

In this paper, we discuss a method for non-destructive measurements of the longitudinal profile of sub-picosecond electron bunches for X-ray free electron lasers. The method is based on the detection of the coherent synchrotron radiation (CSR) produced by a bunch passing through an undulator. Coherent radiation energy within a central cone turns out to be proportional, per pulse, to the square modulus of the bunch form-factor at the resonant frequency of the fundamental harmonic. An attractive feature of the proposed technique is the absence of any apparent limitation which would distort measurements. Indeed, the radiation process takes place in vacuum and is described by analytical formulae. CSR propagates to the detector placed in vacuum. Since CSR energy is in the range up to a fraction of mJ, a simple bolometer is used to measure the energy with a high accuracy. The proposed technique is very sensitive and it is capable of probing the electron bunches with a resolution down to a few microns.

Developments in Polarization and Energy Control of APPLE-II Undulators at Diamond Light Source

NASA Astrophysics Data System (ADS)

Longhi, E. C.; Bencok, P.; Dobrynin, A.; Rial, E. C. M.; Rose, A.; Steadman, P.; Thompson, C.; Thomson, A.; Wang, H.

2013-03-01

A pair of 2m long APPLE-II type undulators have been built for the I10 BLADE beamline at Diamond Light Source. These 48mm period devices have gap as well as four moveable phase axes which provide the possibility to produce the full range of elliptical polarizations as well as linear polarization tilted through a full 180deg. The mechanical layout chosen has a 'master and slave' arrangement of the phase axes on the top and bottom. This arrangement allows the use of symmetries to provide operational ease for both changing energy using only the master phase while keeping fixed linear horizontal or circular polarization, as well as changing linear polarization angle while keeping fixed energy [1]. The design allows very fast motion of the master phase arrays, without sacrifice of accuracy, allowing the possibility of mechanical polarization switching at 1Hz for dichroism experiments. We present the mechanical design features of these devices, as well as the results of magnetic measurements and shimming from before installation. Finally, we present the results of characterization of these devices by the beamline, including polarimetry, which has been done on the various modes of motion to control energy and polarization. These modes of operation have been available to users since 2011.

Broad, Undulated Rift Structure Hidden Under Thick Sediment in the Niigata region, Japan

NASA Astrophysics Data System (ADS)

Sekiguchi, S.; Enescu, B.; Takeda, T.; Asano, Y.; Obara, K.

2011-12-01

maps clearly reveal the "meandered" basin structure and the fairly undulated surface of the basement rock below the low-velocity layer. The aftershocks of the 2004 and 2007 Niigata earthquakes occurred on the flanks of the lower velocity band. The high and low velocity pattern corresponds well to the Bouguer gravity anomalies mapped in the region. Moreover, the shallow velocity structure along a cross-section in the central part of the study area shows a good agreement with the structure mapped by a controlled-source seismology survey on a nearby profile. Kato et al. (2009), based on local tomography results, suggested the presence of a buried rift structure in the area of the 2004 and 2007 M6.8 Niigata earthquakes. Our study demonstrates that the hidden rift has a larger extent and a fairly undulated and segmented structure. The rift segmentation may have implications on the maximum size of earthquakes that could occur in the region and thus detailed mapping of the rift structure helps mitigating the seismic risk in this high-seismicity region.

Source characteristics and design consideration for an iron-free variable-period/polarizing undulator for the UV/VUV range on SPEAR (abstract)

NASA Astrophysics Data System (ADS)

Tatchyn, Roman

1992-01-01

Insertion devices that are tuned by electrical period variation are particularly suited for the design of flexible polarized-light sources [R. Tatchyn, J. Appl. Phys. 65, 4107 (1989); R. Tatchyn and T. Cremer, IEEE Trans. Mag. 26, 3102 (1990)]. Important advantages vis-a-vis mechanical or hybrid variable field designs include: (1) significantly more rapid modulation of both polarization and energy, (2) an inherently larger set of polarization modulation capabilities and (3) polarization/energy modulation at continuously optimized values of K. In this paper we outline some of the general considerations that enter into the design of hysteresis-free variable-period/polarizing undulator structures and present the parameters of a recently-completed prototype design capable of generating intense levels of UV/VUV photon flux on SPEAR running at 3 GeV.

The Structural Biology Center 19ID undulator beamline: facility specifications and protein crystallographic results

PubMed Central

Rosenbaum, Gerd; Alkire, Randy W.; Evans, Gwyndaf; Rotella, Frank J.; Lazarski, Krzystof; Zhang, Rong-Guang; Ginell, Stephan L.; Duke, Norma; Naday, Istvan; Lazarz, Jack; Molitsky, Michael J.; Keefe, Lisa; Gonczy, John; Rock, Larry; Sanishvili, Ruslan; Walsh, Martin A.; Westbrook, Edwin; Joachimiak, Andrzej

2008-01-01

The 19ID undulator beamline of the Structure Biology Center has been designed and built to take full advantage of the high flux, brilliance and quality of X-ray beams delivered by the Advanced Photon Source. The beamline optics are capable of delivering monochromatic X-rays with photon energies from 3.5 to 20 keV (3.5–0.6 Å wavelength) with fluxes up to 8–18 × 1012 photons s−1 (depending on photon energy) onto cryogenically cooled crystal samples. The size of the beam (full width at half-maximum) at the sample position can be varied from 2.2 mm × 1.0 mm (horizontal × vertical, unfocused) to 0.083 mm × 0.020 mm in its fully focused configuration. Specimen-to-detector distances of between 100 mm and 1500 mm can be used. The high flexibility, inherent in the design of the optics, coupled with a κ-geometry goniometer and beamline control software allows optimal strategies to be adopted in protein crystallographic experiments, thus maximizing the chances of their success. A large-area mosaic 3 × 3 CCD detector allows high-quality diffraction data to be measured rapidly to the crystal diffraction limits. The beamline layout and the X-ray optical and endstation components are described in detail, and the results of representative crystallographic experiments are presented. PMID:16371706

X-ray laser diffraction for structure determination of the rhodopsin-arrestin complex

NASA Astrophysics Data System (ADS)

Zhou, X. Edward; Gao, Xiang; Barty, Anton; Kang, Yanyong; He, Yuanzheng; Liu, Wei; Ishchenko, Andrii; White, Thomas A.; Yefanov, Oleksandr; Han, Gye Won; Xu, Qingping; de Waal, Parker W.; Suino-Powell, Kelly M.; Boutet, Sébastien; Williams, Garth J.; Wang, Meitian; Li, Dianfan; Caffrey, Martin; Chapman, Henry N.; Spence, John C. H.; Fromme, Petra; Weierstall, Uwe; Stevens, Raymond C.; Cherezov, Vadim; Melcher, Karsten; Xu, H. Eric

2016-04-01

Serial femtosecond X-ray crystallography (SFX) using an X-ray free electron laser (XFEL) is a recent advancement in structural biology for solving crystal structures of challenging membrane proteins, including G-protein coupled receptors (GPCRs), which often only produce microcrystals. An XFEL delivers highly intense X-ray pulses of femtosecond duration short enough to enable the collection of single diffraction images before significant radiation damage to crystals sets in. Here we report the deposition of the XFEL data and provide further details on crystallization, XFEL data collection and analysis, structure determination, and the validation of the structural model. The rhodopsin-arrestin crystal structure solved with SFX represents the first near-atomic resolution structure of a GPCR-arrestin complex, provides structural insights into understanding of arrestin-mediated GPCR signaling, and demonstrates the great potential of this SFX-XFEL technology for accelerating crystal structure determination of challenging proteins and protein complexes.

X-ray laser diffraction for structure determination of the rhodopsin-arrestin complex.

PubMed

Zhou, X Edward; Gao, Xiang; Barty, Anton; Kang, Yanyong; He, Yuanzheng; Liu, Wei; Ishchenko, Andrii; White, Thomas A; Yefanov, Oleksandr; Han, Gye Won; Xu, Qingping; de Waal, Parker W; Suino-Powell, Kelly M; Boutet, Sébastien; Williams, Garth J; Wang, Meitian; Li, Dianfan; Caffrey, Martin; Chapman, Henry N; Spence, John C H; Fromme, Petra; Weierstall, Uwe; Stevens, Raymond C; Cherezov, Vadim; Melcher, Karsten; Xu, H Eric

2016-04-12

Serial femtosecond X-ray crystallography (SFX) using an X-ray free electron laser (XFEL) is a recent advancement in structural biology for solving crystal structures of challenging membrane proteins, including G-protein coupled receptors (GPCRs), which often only produce microcrystals. An XFEL delivers highly intense X-ray pulses of femtosecond duration short enough to enable the collection of single diffraction images before significant radiation damage to crystals sets in. Here we report the deposition of the XFEL data and provide further details on crystallization, XFEL data collection and analysis, structure determination, and the validation of the structural model. The rhodopsin-arrestin crystal structure solved with SFX represents the first near-atomic resolution structure of a GPCR-arrestin complex, provides structural insights into understanding of arrestin-mediated GPCR signaling, and demonstrates the great potential of this SFX-XFEL technology for accelerating crystal structure determination of challenging proteins and protein complexes.

X-ray laser diffraction for structure determination of the rhodopsin-arrestin complex

PubMed Central

Zhou, X. Edward; Gao, Xiang; Barty, Anton; Kang, Yanyong; He, Yuanzheng; Liu, Wei; Ishchenko, Andrii; White, Thomas A.; Yefanov, Oleksandr; Han, Gye Won; Xu, Qingping; de Waal, Parker W.; Suino-Powell, Kelly M.; Boutet, Sébastien; Williams, Garth J.; Wang, Meitian; Li, Dianfan; Caffrey, Martin; Chapman, Henry N.; Spence, John C.H.; Fromme, Petra; Weierstall, Uwe; Stevens, Raymond C.; Cherezov, Vadim; Melcher, Karsten; Xu, H. Eric

2016-01-01

Serial femtosecond X-ray crystallography (SFX) using an X-ray free electron laser (XFEL) is a recent advancement in structural biology for solving crystal structures of challenging membrane proteins, including G-protein coupled receptors (GPCRs), which often only produce microcrystals. An XFEL delivers highly intense X-ray pulses of femtosecond duration short enough to enable the collection of single diffraction images before significant radiation damage to crystals sets in. Here we report the deposition of the XFEL data and provide further details on crystallization, XFEL data collection and analysis, structure determination, and the validation of the structural model. The rhodopsin-arrestin crystal structure solved with SFX represents the first near-atomic resolution structure of a GPCR-arrestin complex, provides structural insights into understanding of arrestin-mediated GPCR signaling, and demonstrates the great potential of this SFX-XFEL technology for accelerating crystal structure determination of challenging proteins and protein complexes. PMID:27070998

The microjet-film interaction: the interaction and resulting shapes of a liquid microjet impacting a soap film

NASA Astrophysics Data System (ADS)

Chan, Jau Tung; Lee, Jie Liang; Tjeng, Vincent; Yeo, Ye; Tan, Guoxian

2014-11-01

The International Young Physicists’ Tournament (IYPT) is a worldwide annual competition for high-school students. This paper is adapted from the solution to problem 8, Jet and Film, as presented by the Singapore Team at the 26th IYPT, Taipei, Taiwan. The impact of liquid microjets on stable soap films was investigated. Two steady regimes were observed: refraction (where the microjet penetrates the soap film and is deflected) and absorption (where the microjet merges with the soap film and forms vertical undulating patterns on the soap film surface). This phenomenon has potential applications in controlling the trajectory of a liquid microjet in air. Although Kirstetter et al (2012) investigated this interaction by using the same liquid for both the microjet and the soap film, this paper extends their work by using different liquids for the microjet and the soap film. In addition, the need for a small-angle approximation of Snell’s law is removed for the refraction regime, and an alternative expression is proposed for the force exerted by the soap film on the microjet in the absorption regime that accounts for the dependence of the wavelength of the undulating patterns on the angle of incidence of the microjet on the soap film. Empirical data support these improved theoretical predictions.

Structure of CPV17 polyhedrin determined by the improved analysis of serial femtosecond crystallographic data

DOE PAGES

Ginn, Helen M.; Messerschmidt, Marc; Ji, Xiaoyun; ...

2015-03-09

The X-ray free-electron laser (XFEL) allows the analysis of small weakly diffracting protein crystals, but has required very many crystals to obtain good data. Here we use an XFEL to determine the room temperature atomic structure for the smallest cytoplasmic polyhedrosis virus polyhedra yet characterized, which we failed to solve at a synchrotron. These protein microcrystals, roughly a micron across, accrue within infected cells. We use a new physical model for XFEL diffraction, which better estimates the experimental signal, delivering a high-resolution XFEL structure (1.75 Å), using fewer crystals than previously required for this resolution. The crystal lattice and proteinmore » core are conserved compared with a polyhedrin with less than 10% sequence identity. We explain how the conserved biological phenotype, the crystal lattice, is maintained in the face of extreme environmental challenge and massive evolutionary divergence. Our improved methods should open up more challenging biological samples to XFEL analysis.« less

Diffraction based Hanbury Brown and Twiss interferometry at a hard x-ray free-electron laser

DOE PAGES

Gorobtsov, O. Yu.; Mukharamova, N.; Lazarev, S.; ...

2018-02-02

X-ray free-electron lasers (XFELs) provide extremely bright and highly spatially coherent x-ray radiation with femtosecond pulse duration. Currently, they are widely used in biology and material science. Knowledge of the XFEL statistical properties during an experiment may be vitally important for the accurate interpretation of the results. Here, for the first time, we demonstrate Hanbury Brown and Twiss (HBT) interferometry performed in diffraction mode at an XFEL source. It allowed us to determine the XFEL statistical properties directly from the Bragg peaks originating from colloidal crystals. This approach is different from the traditional one when HBT interferometry is performed inmore » the direct beam without a sample. Our analysis has demonstrated nearly full (80%) global spatial coherence of the XFEL pulses and an average pulse duration on the order of ten femtoseconds for the monochromatized beam, which is significantly shorter than expected from the electron bunch measurements.« less

Diffraction based Hanbury Brown and Twiss interferometry at a hard x-ray free-electron laser

DOE Office of Scientific and Technical Information (OSTI.GOV)

Gorobtsov, O. Yu.; Mukharamova, N.; Lazarev, S.

X-ray free-electron lasers (XFELs) provide extremely bright and highly spatially coherent x-ray radiation with femtosecond pulse duration. Currently, they are widely used in biology and material science. Knowledge of the XFEL statistical properties during an experiment may be vitally important for the accurate interpretation of the results. Here, for the first time, we demonstrate Hanbury Brown and Twiss (HBT) interferometry performed in diffraction mode at an XFEL source. It allowed us to determine the XFEL statistical properties directly from the Bragg peaks originating from colloidal crystals. This approach is different from the traditional one when HBT interferometry is performed inmore » the direct beam without a sample. Our analysis has demonstrated nearly full (80%) global spatial coherence of the XFEL pulses and an average pulse duration on the order of ten femtoseconds for the monochromatized beam, which is significantly shorter than expected from the electron bunch measurements.« less

X-ray laser diffraction for structure determination of the rhodopsin-arrestin complex

DOE Office of Scientific and Technical Information (OSTI.GOV)

Zhou, X. Edward; Gao, Xiang; Barty, Anton

Here, serial femtosecond X-ray crystallography (SFX) using an X-ray free electron laser (XFEL) is a recent advancement in structural biology for solving crystal structures of challenging membrane proteins, including G-protein coupled receptors (GPCRs), which often only produce microcrystals. An XFEL delivers highly intense X-ray pulses of femtosecond duration short enough to enable the collection of single diffraction images before significant radiation damage to crystals sets in. Here we report the deposition of the XFEL data and provide further details on crystallization, XFEL data collection and analysis, structure determination, and the validation of the structural model. The rhodopsin-arrestin crystal structure solvedmore » with SFX represents the first near-atomic resolution structure of a GPCR-arrestin complex, provides structural insights into understanding of arrestin-mediated GPCR signaling, and demonstrates the great potential of this SFX-XFEL technology for accelerating crystal structure determination of challenging proteins and protein complexes.« less

X-ray laser diffraction for structure determination of the rhodopsin-arrestin complex

DOE PAGES

Zhou, X. Edward; Gao, Xiang; Barty, Anton; ...

2016-04-12

Here, serial femtosecond X-ray crystallography (SFX) using an X-ray free electron laser (XFEL) is a recent advancement in structural biology for solving crystal structures of challenging membrane proteins, including G-protein coupled receptors (GPCRs), which often only produce microcrystals. An XFEL delivers highly intense X-ray pulses of femtosecond duration short enough to enable the collection of single diffraction images before significant radiation damage to crystals sets in. Here we report the deposition of the XFEL data and provide further details on crystallization, XFEL data collection and analysis, structure determination, and the validation of the structural model. The rhodopsin-arrestin crystal structure solvedmore » with SFX represents the first near-atomic resolution structure of a GPCR-arrestin complex, provides structural insights into understanding of arrestin-mediated GPCR signaling, and demonstrates the great potential of this SFX-XFEL technology for accelerating crystal structure determination of challenging proteins and protein complexes.« less

MX2: a high-flux undulator microfocus beamline serving both the chemical and macromolecular crystallography communities at the Australian Synchrotron

PubMed Central

Aishima, Jun; Cherukuvada, Hima; Clarken, Robert; Clift, Mark; Ericsson, Daniel Jesper; Macedo, Sofia; Mudie, Nathan; Price, Jason Roy; Rostan, Robert; Williamson, Rachel

2018-01-01

MX2 is an in-vacuum undulator-based crystallography beamline at the 3 GeV Australian Synchrotron. The beamline delivers hard X-rays in the energy range 4.8–21 keV to a focal spot of 22 × 12 µm FWHM (H × V). At 13 keV the flux at the sample is 3.4 × 1012 photons s−1. The beamline endstation allows robotic handling of cryogenic samples via an updated SSRL SAM robot. This beamline is ideal for weakly diffracting hard-to-crystallize proteins, virus particles, protein assemblies and nucleic acids as well as smaller molecules such as inorganic catalysts and organic drug molecules. The beamline is now mature and has enjoyed a full user program for the last nine years. This paper describes the beamline status, plans for its future and some recent scientific highlights. PMID:29714201

Time-resolved structural studies at synchrotrons and X-ray free electron lasers: opportunities and challenges

PubMed Central

Neutze, Richard; Moffat, Keith

2012-01-01

X-ray free electron lasers (XFELs) are potentially revolutionary X-ray sources because of their very short pulse duration, extreme peak brilliance and high spatial coherence, features that distinguish them from today’s synchrotron sources. We review recent time-resolved Laue diffraction and time-resolved wide angle X-ray scattering (WAXS) studies at synchrotron sources, and initial static studies at XFELs. XFELs have the potential to transform the field of time-resolved structural biology, yet many challenges arise in devising and adapting hardware, experimental design and data analysis strategies to exploit their unusual properties. Despite these challenges, we are confident that XFEL sources are poised to shed new light on ultrafast protein reaction dynamics. PMID:23021004

Kinetic Modeling of Ultraintense X-ray Laser-Matter Interactions

NASA Astrophysics Data System (ADS)

Royle, Ryan; Sentoku, Yasuhiko; Mancini, Roberto

2016-10-01

Hard x-ray free-electron lasers (XFELs) have had a profound impact on the physical, chemical, and biological sciences. They can produce millijoule x-ray laser pulses just tens of femtoseconds in duration with more than 1012 photons each, making them the brightest laboratory x-ray sources ever produced by several orders of magnitude. An XFEL pulse can be intensified to 1020 W/cm2 when focused to submicron spot sizes, making it possible to isochorically heat solid matter well beyond 100 eV. These characteristics enable XFELs to create and probe well-characterized warm and hot dense plasmas of relevance to HED science, planetary science, laboratory astrophysics, relativistic laser plasmas, and fusion research. Several newly developed atomic physics models including photoionization, Auger ionization, and continuum-lowering have been implemented in a particle-in-cell code, PICLS, which self-consistently solves the x-ray transport, to enable the simulation of the non-LTE plasmas created by ultraintense x-ray laser interactions with solid density matter. The code is validated against the results of several recent experiments and is used to simulate the maximum-intensity x-ray heating of solid iron targets. This work was supported by DOE/OFES under Contract No. DE-SC0008827.

A case of undulating fevers and elevated liver tests after pancreas-kidney transplantation.

PubMed

Im, Gene Y; Sehgal, Vinita; Ward, Stephen C

2013-02-01

The patient is a 50-year-old Caucasian woman with a history of a pancreas and two kidney transplants complicated by chronic rejection of her latest kidney allograft and currently undergoing hemodialysis, who was referred for fever of unknown origin and elevated liver tests. She suffered a self-limited acute diarrheal illness with fever 3 months prior to referral and then experienced a persistent, undulating fever pattern. An exhaustive evaluation involving many consultants was undertaken, but failed to determine the etiology of her symptoms. Given her history, persistently elevated liver tests, and abnormal but nonspecific liver biopsy findings, infection with hepatitis E virus (HEV) was entertained. Several serum and stool samples were sent to the Centers for Disease Control for detection of HEV that were positive and ultimately consistent with autochthonous chronic HEV infection. The patient was treated with ribavirin and achieved normalization of her transaminase activities and resolution of her fever after 1 month, and undetectable HEV polymerase chain reaction at treatment month 6 and 10, at which time treatment was stopped. There has been renewed interest in HEV in light of recent studies demonstrating the existence of a chronic form of HEV infection occurring in immunosuppressed patients, such as solid-organ-transplant recipients. This report highlights a case of chronic HEV infection in a pancreas-kidney-transplant recipient with an unusual clinical presentation and highlights the need for increased awareness of chronic HEV infection in the hepatology and transplant community. Thieme Medical Publishers 333 Seventh Avenue, New York, NY 10001, USA.

X-ray free electron laser: opportunities for drug discovery.

PubMed

Cheng, Robert K Y; Abela, Rafael; Hennig, Michael

2017-11-08

Past decades have shown the impact of structural information derived from complexes of drug candidates with their protein targets to facilitate the discovery of safe and effective medicines. Despite recent developments in single particle cryo-electron microscopy, X-ray crystallography has been the main method to derive structural information. The unique properties of X-ray free electron laser (XFEL) with unmet peak brilliance and beam focus allow X-ray diffraction data recording and successful structure determination from smaller and weaker diffracting crystals shortening timelines in crystal optimization. To further capitalize on the XFEL advantage, innovations in crystal sample delivery for the X-ray experiment, data collection and processing methods are required. This development was a key contributor to serial crystallography allowing structure determination at room temperature yielding physiologically more relevant structures. Adding the time resolution provided by the femtosecond X-ray pulse will enable monitoring and capturing of dynamic processes of ligand binding and associated conformational changes with great impact to the design of candidate drug compounds. © 2017 The Author(s). Published by Portland Press Limited on behalf of the Biochemical Society.

Characterization of the X-ray coherence properties of an undulator beamline at the Advanced Photon Source

DOE Office of Scientific and Technical Information (OSTI.GOV)

Ju, Guangxu; Highland, Matthew J.; Thompson, Carol

In anticipation of the increased use of coherent X-ray methods and the need to upgrade beamlines to match improved source quality, here the coherence properties of the X-rays delivered by beamline 12ID-D at the Advanced Photon Source have been characterized. The measured X-ray divergence, beam size, brightness and coherent flux at energies up to 26 keV are compared with the calculated values from the undulator source, and the effects of beamline optics such as a mirror, monochromator and compound refractive lenses are evaluated. Diffraction patterns from slits as a function of slit width are analyzed using wave propagation theory tomore » obtain the beam divergence and thus coherence length. Imaging of the source using a compound refractive lens was found to be the most accurate method for determining the vertical divergence. While the brightness and coherent flux obtained without a monochromator ('pink beam') agree well with those calculated for the source, those measured with the monochromator were a factor of three to six lower than the source, primarily because of vertical divergence introduced by the monochromator. As a result, the methods described herein should be widely applicable for measuring the X-ray coherence properties of synchrotron beamlines.« less

Characterization of the X-ray coherence properties of an undulator beamline at the Advanced Photon Source

DOE PAGES

Ju, Guangxu; Highland, Matthew J.; Thompson, Carol; ...

2018-06-13

In anticipation of the increased use of coherent X-ray methods and the need to upgrade beamlines to match improved source quality, here the coherence properties of the X-rays delivered by beamline 12ID-D at the Advanced Photon Source have been characterized. The measured X-ray divergence, beam size, brightness and coherent flux at energies up to 26 keV are compared with the calculated values from the undulator source, and the effects of beamline optics such as a mirror, monochromator and compound refractive lenses are evaluated. Diffraction patterns from slits as a function of slit width are analyzed using wave propagation theory tomore » obtain the beam divergence and thus coherence length. Imaging of the source using a compound refractive lens was found to be the most accurate method for determining the vertical divergence. While the brightness and coherent flux obtained without a monochromator ('pink beam') agree well with those calculated for the source, those measured with the monochromator were a factor of three to six lower than the source, primarily because of vertical divergence introduced by the monochromator. As a result, the methods described herein should be widely applicable for measuring the X-ray coherence properties of synchrotron beamlines.« less

Intensity-dependent resonant transmission of x-rays in solid-density aluminum plasma

NASA Astrophysics Data System (ADS)

Cho, M. S.; Chung, H.-K.; Cho, B. I.

2018-05-01

X-ray free-electron lasers (XFELs) provide unique opportunities to generate and investigate dense plasmas. The absorption and transmission properties of x-ray photons in dense plasmas are important in characterizing the state of the plasmas. Experimental evidence shows that the transmission of x-ray photons through dense plasmas depends greatly on the incident XFEL intensity. Here, we present a detailed analysis of intensity-dependent x-ray transmission in solid-density aluminum using collisional-radiative population kinetics calculations. Reverse saturable absorption (RSA), i.e., an increase in x-ray absorption with intensity has been observed for photon energies below the K-absorption edge and in the intensity range of 1016-1017 W/cm2 for XFEL photons with 1487 eV. At higher intensities, a transition from RSA to saturable absorption (SA) is predicted; thus, the x-ray absorption decreases with intensity above a threshold value. For XFEL photon energies of 1501 eV and 1515 eV, the transition from RSA to SA occurs at XFEL intensities between 1017-1018 W/cm2. Electron temperatures are predicted to be in the range of 30-50 eV for the given experimental conditions. Detailed population kinetics of the charge states explains the intensity-dependent absorption of x-ray photons and the fast modulation of XFEL pulses for both RSA and SA.

Effect of slope errors on the performance of mirrors for x-ray free electron laser applications

DOE PAGES

Pardini, Tom; Cocco, Daniele; Hau-Riege, Stefan P.

2015-12-02

In this work we point out that slope errors play only a minor role in the performance of a certain class of x-ray optics for X-ray Free Electron Laser (XFEL) applications. Using physical optics propagation simulations and the formalism of Church and Takacs [Opt. Eng. 34, 353 (1995)], we show that diffraction limited optics commonly found at XFEL facilities posses a critical spatial wavelength that makes them less sensitive to slope errors, and more sensitive to height error. Given the number of XFELs currently operating or under construction across the world, we hope that this simple observation will help tomore » correctly define specifications for x-ray optics to be deployed at XFELs, possibly reducing the budget and the timeframe needed to complete the optical manufacturing and metrology.« less

Effect of slope errors on the performance of mirrors for x-ray free electron laser applications.

PubMed

Pardini, Tom; Cocco, Daniele; Hau-Riege, Stefan P

2015-12-14

In this work we point out that slope errors play only a minor role in the performance of a certain class of x-ray optics for X-ray Free Electron Laser (XFEL) applications. Using physical optics propagation simulations and the formalism of Church and Takacs [Opt. Eng. 34, 353 (1995)], we show that diffraction limited optics commonly found at XFEL facilities posses a critical spatial wavelength that makes them less sensitive to slope errors, and more sensitive to height error. Given the number of XFELs currently operating or under construction across the world, we hope that this simple observation will help to correctly define specifications for x-ray optics to be deployed at XFELs, possibly reducing the budget and the timeframe needed to complete the optical manufacturing and metrology.

OPERATIONAL EXPERIENCE WITH FAST FIBER-OPTIC BEAM LOSS MONITORS FOR THE ADVANCED PHOTON SOURCE STORAGE RING SUPERCONDUCTING UNDULATORS

DOE Office of Scientific and Technical Information (OSTI.GOV)

Dooling, J.; Harkay, K.; Sajaev, V.

Fast fiber-optic (FFO) beam loss monitors (BLMs) installed with the first two superconducting undulators (SCUs) in the Advanced Photon Source storage ring have proven to be a useful diagnostic for measuring deposited charge (energy) during rapid beam loss events. The first set of FFOBLMs were installed outside the cryostat of the short SCU, a 0.33-m long device, above and below the beam centerline. The second set are mounted with the first 1.1-mlong SCU within the cryostat, on the outboard and inboard sides of the vacuum chamber. The next 1.1-m-long SCU is scheduled to replace the short SCU later in 2016more » and will be fitted with FFOBLMs in a manner similar to original 1.1-m device. The FFOBLMs were employed to set timing and voltage for the abort kicker (AK) system. The AK helps to prevent quenching of the SCUs during beam dumps [1] by directing the beam away from the SC magnet windings. The AK is triggered by the Machine Protection System (MPS). In cases when the AK fails to prevent quenching, the FFOBLMs show that losses often begin before detection by the MPS.« less

Wave trapping by dual porous barriers near a wall in the presence of bottom undulation

NASA Astrophysics Data System (ADS)

Kaligatla, R. B.; Manisha; Sahoo, T.

2017-09-01

Trapping of oblique surface gravity waves by dual porous barriers near a wall is studied in the presence of step type varying bottom bed that is connected on both sides by water of uniform depths. The porous barriers are assumed to be fixed at a certain distance in front of a vertical rigid wall. Using linear water wave theory and Darcy's law for flow past porous structure, the physical problem is converted into a boundary value problem. Using eigenfunction expansion in the uniform bottom bed region and modified mild-slope equation in the varying bottom bed region, the mathematical problem is handled for solution. Moreover, certain jump conditions are used to account for mass conservation at slope discontinuities in the bottom bed profile. To understand the effect of dual porous barriers in creating tranquility zone and minimum load on the sea wall, reflection coefficient, wave forces acting on the barrier and the wall, and surface wave elevation are computed and analyzed for different values of depth ratio, porous-effect parameter, incident wave angle, gap between the barriers and wall and slope length of undulated bottom. The study reveals that with moderate porosity and suitable gap between barriers and sea wall, using dual barriers an effective wave trapping system can be developed which will exert less wave force on the barriers and the rigid wall. The proposed wave trapping system is likely to be of immense help for protecting various facilities/ infrastructures in coastal environment.

Stimulated Electronic X-Ray Raman Scattering

NASA Astrophysics Data System (ADS)

Weninger, Clemens; Purvis, Michael; Ryan, Duncan; London, Richard A.; Bozek, John D.; Bostedt, Christoph; Graf, Alexander; Brown, Gregory; Rocca, Jorge J.; Rohringer, Nina

2013-12-01

We demonstrate strong stimulated inelastic x-ray scattering by resonantly exciting a dense gas target of neon with femtosecond, high-intensity x-ray pulses from an x-ray free-electron laser (XFEL). A small number of lower energy XFEL seed photons drive an avalanche of stimulated resonant inelastic x-ray scattering processes that amplify the Raman scattering signal by several orders of magnitude until it reaches saturation. Despite the large overall spectral width, the internal spiky structure of the XFEL spectrum determines the energy resolution of the scattering process in a statistical sense. This is demonstrated by observing a stochastic line shift of the inelastically scattered x-ray radiation. In conjunction with statistical methods, XFELs can be used for stimulated resonant inelastic x-ray scattering, with spectral resolution smaller than the natural width of the core-excited, intermediate state.

Compact double-bunch x-ray free electron lasers for fresh bunch self-seeding and harmonic lasing

DOE PAGES

Emma, C.; Feng, Y.; Nguyen, D. C.; ...

2017-03-03

This study presents a novel method to improve the longitudinal coherence, efficiency and maximum photon energy of x-ray free electron lasers (XFELs). The method is equivalent to having two separate concatenated XFELs. The first uses one bunch of electrons to reach the saturation regime, generating a high power self-amplified spontaneous emission x-ray pulse at the fundamental and third harmonic. The x-ray pulse is filtered through an attenuator/monochromator and seeds a different electron bunch in the second FEL, using the fundamental and/or third harmonic as an input signal. In our method we combine the two XFELs operating with two bunches, separatedmore » by one or more rf cycles, in the same linear accelerator. We discuss the advantages and applications of the proposed system for present and future XFELs.« less

Swimming performance of a bio-inspired robotic vessel with undulating fin propulsion.

PubMed

Liu, Hanlin; Curet, Oscar M

2018-06-18

Undulatory fin propulsion exhibits high degree of maneuver control -- an ideal for underwater vessels exploring complex environments. In this work, we developed and tested a self-contained, free-swimming robot with a single undulating fin running along the length of the robot, which controls both forward motion and directional maneuvers. We successfully replicated several maneuvers including forward swimming, reversed motion, diving, station-keeping and vertical swimming. For each maneuver, a series of experiments were performed as a function of fin frequency, wavelength and traveling wave direction to measure swimming velocities, orientation angles and mean power consumption. In addition, three-dimensional flow fields were measured during forward swimming and station-keeping using volumetric particle image velocimetry (PIV). The efficiency for forward swimming was compared using three metrics: cost of transport, wave efficiency and Strouhal number. The results indicate that the cost of transport exhibits a V-shape trend with the minimum value at low swimming velocity. The robot can reach optimal wave efficiency and locomotor performance at a range of 0.2 to 0.4 St. Volumetric PIV data reveal the shed of vortex tubes generated by the fin during forward swimming and station keeping. For forward swimming, a series of vortex tubes are shed off the fin edge with a lateral and downward direction with respect to the longitudinal axis of the fin. For station keeping, flow measurements suggest that the vortex tubes are shed at the mid-section of the fin while the posterior and anterior segment of the vortex stay attached to the fin. These results agree with the previous vortex structures based on simulations and 2D PIV. The further development of this vessel with high maneuverability and station keeping performance can be used for oceanography, coastal exploration, defense, oil industry and other marine industries where operations are unsafe or impractical for divers or

Ultra-high-resolution inelastic X-ray scattering at high-repetition-rate self-seeded X-ray free-electron lasers

PubMed Central

Chubar, Oleg; Geloni, Gianluca; Kocharyan, Vitali; Madsen, Anders; Saldin, Evgeni; Serkez, Svitozar; Shvyd’ko, Yuri; Sutter, John

2016-01-01

Inelastic X-ray scattering (IXS) is an important tool for studies of equilibrium dynamics in condensed matter. A new spectrometer recently proposed for ultra-high-resolution IXS (UHRIX) has achieved 0.6 meV and 0.25 nm−1 spectral and momentum-transfer resolutions, respectively. However, further improvements down to 0.1 meV and 0.02 nm−1 are required to close the gap in energy–momentum space between high- and low-frequency probes. It is shown that this goal can be achieved by further optimizing the X-ray optics and by increasing the spectral flux of the incident X-ray pulses. UHRIX performs best at energies from 5 to 10 keV, where a combination of self-seeding and undulator tapering at the SASE-2 beamline of the European XFEL promises up to a 100-fold increase in average spectral flux compared with nominal SASE pulses at saturation, or three orders of magnitude more than what is possible with storage-ring-based radiation sources. Wave-optics calculations show that about 7 × 1012 photons s−1 in a 90 µeV bandwidth can be achieved on the sample. This will provide unique new possibilities for dynamics studies by IXS. PMID:26917127

Ultra-high-resolution inelastic X-ray scattering at high-repetition-rate self-seeded X-ray free-electron lasers

DOE PAGES

Chubar, Oleg; Geloni, Gianluca; Kocharyan, Vitali; ...

2016-03-01

Inelastic X-ray scattering (IXS) is an important tool for studies of equilibrium dynamics in condensed matter. A new spectrometer recently proposed for ultra-high-resolution IXS (UHRIX) has achieved 0.6 meV and 0.25 nm ₋1spectral and momentum-transfer resolutions, respectively. However, further improvements down to 0.1 meV and 0.02 nm ₋1are required to close the gap in energy–momentum space between high- and low-frequency probes. It is shown that this goal can be achieved by further optimizing the X-ray optics and by increasing the spectral flux of the incident X-ray pulses. UHRIX performs best at energies from 5 to 10 keV, where a combinationmore » of self-seeding and undulator tapering at the SASE-2 beamline of the European XFEL promises up to a 100-fold increase in average spectral flux compared with nominal SASE pulses at saturation, or three orders of magnitude more than what is possible with storage-ring-based radiation sources. Wave-optics calculations show that about 7 × 10 12 photons s ₋1in a 90 µeV bandwidth can be achieved on the sample. Ultimately, this will provide unique new possibilities for dynamics studies by IXS.« less

Investigating radiation induced damage processes with femtosecond x-ray pulses (Conference Presentation)

NASA Astrophysics Data System (ADS)

Song, Changyong

2017-05-01

Interest in high-resolution structure investigation has been zealous, especially with the advent of X-ray free electron lasers (XFELs). The intense and ultra-short X-ray laser pulses ( 10 GW) pave new routes to explore structures and dynamics of single macromolecules, functional nanomaterials and complex electronic materials. In the last several years, we have developed XFEL single-shot diffraction imaging by probing ultrafast phase changes directly. Pump-probe single-shot imaging was realized by synchronizing femtosecond (<10 fs in FWHM) X-ray laser (probe) with femtosecond (50 fs) IR laser (pump) at better than 1 ps resolution. Nanoparticles under intense fs-laser pulses were investigated with fs XFEL pulses to provide insight into the irreversible particle damage processes with nanoscale resolution. Research effort, introduced, aims to extend the current spatio-temporal resolution beyond the present limit. We expect this single-shot dynamic imaging to open new science opportunity with XFELs.

Radiation-Induced Chemical Dynamics in Ar Clusters Exposed to Strong X-Ray Pulses.

PubMed

Kumagai, Yoshiaki; Jurek, Zoltan; Xu, Weiqing; Fukuzawa, Hironobu; Motomura, Koji; Iablonskyi, Denys; Nagaya, Kiyonobu; Wada, Shin-Ichi; Mondal, Subhendu; Tachibana, Tetsuya; Ito, Yuta; Sakai, Tsukasa; Matsunami, Kenji; Nishiyama, Toshiyuki; Umemoto, Takayuki; Nicolas, Christophe; Miron, Catalin; Togashi, Tadashi; Ogawa, Kanade; Owada, Shigeki; Tono, Kensuke; Yabashi, Makina; Son, Sang-Kil; Ziaja, Beata; Santra, Robin; Ueda, Kiyoshi

2018-06-01

We show that electron and ion spectroscopy reveals the details of the oligomer formation in Ar clusters exposed to an x-ray free electron laser (XFEL) pulse, i.e., chemical dynamics triggered by x rays. With guidance from a dedicated molecular dynamics simulation tool, we find that van der Waals bonding, the oligomer formation mechanism, and charge transfer among the cluster constituents significantly affect ionization dynamics induced by an XFEL pulse of moderate fluence. Our results clearly demonstrate that XFEL pulses can be used not only to "damage and destroy" molecular assemblies but also to modify and transform their molecular structure. The accuracy of the predictions obtained makes it possible to apply the cluster spectroscopy, in connection with the respective simulations, for estimation of the XFEL pulse fluence in the fluence regime below single-atom multiple-photon absorption, which is hardly accessible with other diagnostic tools.

Radiation-Induced Chemical Dynamics in Ar Clusters Exposed to Strong X-Ray Pulses

NASA Astrophysics Data System (ADS)

Kumagai, Yoshiaki; Jurek, Zoltan; Xu, Weiqing; Fukuzawa, Hironobu; Motomura, Koji; Iablonskyi, Denys; Nagaya, Kiyonobu; Wada, Shin-ichi; Mondal, Subhendu; Tachibana, Tetsuya; Ito, Yuta; Sakai, Tsukasa; Matsunami, Kenji; Nishiyama, Toshiyuki; Umemoto, Takayuki; Nicolas, Christophe; Miron, Catalin; Togashi, Tadashi; Ogawa, Kanade; Owada, Shigeki; Tono, Kensuke; Yabashi, Makina; Son, Sang-Kil; Ziaja, Beata; Santra, Robin; Ueda, Kiyoshi

2018-06-01

We show that electron and ion spectroscopy reveals the details of the oligomer formation in Ar clusters exposed to an x-ray free electron laser (XFEL) pulse, i.e., chemical dynamics triggered by x rays. With guidance from a dedicated molecular dynamics simulation tool, we find that van der Waals bonding, the oligomer formation mechanism, and charge transfer among the cluster constituents significantly affect ionization dynamics induced by an XFEL pulse of moderate fluence. Our results clearly demonstrate that XFEL pulses can be used not only to "damage and destroy" molecular assemblies but also to modify and transform their molecular structure. The accuracy of the predictions obtained makes it possible to apply the cluster spectroscopy, in connection with the respective simulations, for estimation of the XFEL pulse fluence in the fluence regime below single-atom multiple-photon absorption, which is hardly accessible with other diagnostic tools.

Stochastic stimulated electronic x-ray Raman spectroscopy

PubMed Central

Kimberg, Victor; Rohringer, Nina

2016-01-01

Resonant inelastic x-ray scattering (RIXS) is a well-established tool for studying electronic, nuclear, and collective dynamics of excited atoms, molecules, and solids. An extension of this powerful method to a time-resolved probe technique at x-ray free electron lasers (XFELs) to ultimately unravel ultrafast chemical and structural changes on a femtosecond time scale is often challenging, due to the small signal rate in conventional implementations at XFELs that rely on the usage of a monochromator setup to select a small frequency band of the broadband, spectrally incoherent XFEL radiation. Here, we suggest an alternative approach, based on stochastic spectroscopy, which uses the full bandwidth of the incoming XFEL pulses. Our proposed method is relying on stimulated resonant inelastic x-ray scattering, where in addition to a pump pulse that resonantly excites the system a probe pulse on a specific electronic inelastic transition is provided, which serves as a seed in the stimulated scattering process. The limited spectral coherence of the XFEL radiation defines the energy resolution in this process and stimulated RIXS spectra of high resolution can be obtained by covariance analysis of the transmitted spectra. We present a detailed feasibility study and predict signal strengths for realistic XFEL parameters for the CO molecule resonantly pumped at the O1s→π* transition. Our theoretical model describes the evolution of the spectral and temporal characteristics of the transmitted x-ray radiation, by solving the equation of motion for the electronic and vibrational degrees of freedom of the system self consistently with the propagation by Maxwell equations. PMID:26958585

Development and fabrication of the vacuum systems for an elliptically polarized undulator at Taiwan Photon Source

NASA Astrophysics Data System (ADS)

Chang, Chin-Chun; Chan, Che-Kai; Wu, Ling-Hui; Shueh, Chin; Shen, I.-Ching; Cheng, Chia-Mu; Yang, I.-Chen

2017-05-01

Three sets of a vacuum system were developed and fabricated for elliptically polarized undulators (EPU) of a 3-GeV synchrotron facility. These chambers were shaped with low roughness extrusion and oil-free machining; the design combines aluminium and stainless steel. The use of a bimetallic material to connect the EPU to the vacuum system achieves the vacuum sealing and to resolve the leakage issue due to bake process induced thermal expansion difference. The interior of the EPU chamber consists of a non-evaporable-getter strip pump in a narrow space to absorb photon-stimulated desorption and to provide a RF bridge design to decrease impedance effect in the two ends of EPU chamber. To fabricate these chambers and to evaluate the related performance, we performed a computer simulation to optimize the structure. During the machining and welding, the least deformation was achieved, less than 0.1 mm near 4 m. In the installation, the linear slider can provide a stable and precision moved along parallel the electron beam direction smoothly for the EPU chamber to decrease the twist issue during baking process. The pressure of the EPU chamber attained less than 2×10-8 Pa through baking. These vacuum systems of the EPU magnet have been installed in the electron storage ring of Taiwan Photon Source in 2015 May and have normally operated at 300 mA continuously since, and to keep beam life time achieved over than 12 h.

Methods development for diffraction and spectroscopy studies of metalloenzymes at X-ray free-electron lasers

PubMed Central

Kern, Jan; Hattne, Johan; Tran, Rosalie; Alonso-Mori, Roberto; Laksmono, Hartawan; Gul, Sheraz; Sierra, Raymond G.; Rehanek, Jens; Erko, Alexei; Mitzner, Rolf; Wernet, Phillip; Bergmann, Uwe; Sauter, Nicholas K.; Yachandra, Vittal; Yano, Junko

2014-01-01

X-ray free-electron lasers (XFELs) open up new possibilities for X-ray crystallographic and spectroscopic studies of radiation-sensitive biological samples under close to physiological conditions. To facilitate these new X-ray sources, tailored experimental methods and data-processing protocols have to be developed. The highly radiation-sensitive photosystem II (PSII) protein complex is a prime target for XFEL experiments aiming to study the mechanism of light-induced water oxidation taking place at a Mn cluster in this complex. We developed a set of tools for the study of PSII at XFELs, including a new liquid jet based on electrofocusing, an energy dispersive von Hamos X-ray emission spectrometer for the hard X-ray range and a high-throughput soft X-ray spectrometer based on a reflection zone plate. While our immediate focus is on PSII, the methods we describe here are applicable to a wide range of metalloenzymes. These experimental developments were complemented by a new software suite, cctbx.xfel. This software suite allows for near-real-time monitoring of the experimental parameters and detector signals and the detailed analysis of the diffraction and spectroscopy data collected by us at the Linac Coherent Light Source, taking into account the specific characteristics of data measured at an XFEL. PMID:24914169

Opportunities and challenges for time-resolved studies of protein structural dynamics at X-ray free-electron lasers.

PubMed

Neutze, Richard

2014-07-17

X-ray free-electron lasers (XFELs) are revolutionary X-ray sources. Their time structure, providing X-ray pulses of a few tens of femtoseconds in duration; and their extreme peak brilliance, delivering approximately 10(12) X-ray photons per pulse and facilitating sub-micrometre focusing, distinguish XFEL sources from synchrotron radiation. In this opinion piece, I argue that these properties of XFEL radiation will facilitate new discoveries in life science. I reason that time-resolved serial femtosecond crystallography and time-resolved wide angle X-ray scattering are promising areas of scientific investigation that will be advanced by XFEL capabilities, allowing new scientific questions to be addressed that are not accessible using established methods at storage ring facilities. These questions include visualizing ultrafast protein structural dynamics on the femtosecond to picosecond time-scale, as well as time-resolved diffraction studies of non-cyclic reactions. I argue that these emerging opportunities will stimulate a renaissance of interest in time-resolved structural biochemistry.

Predicting path from undulations for C. elegans using linear and nonlinear resistive force theory

NASA Astrophysics Data System (ADS)

Keaveny, Eric E.; Brown, André E. X.

2017-04-01

A basic issue in the physics of behaviour is the mechanical relationship between an animal and its surroundings. The model nematode C. elegans provides an excellent platform to explore this relationship due to its anatomical simplicity. Nonetheless, the physics of nematode crawling, in which the worm undulates its body to move on a wet surface, is not completely understood and the mathematical models often used to describe this phenomenon are empirical. We confirm that linear resistive force theory, one such empirical model, is effective at predicting a worm’s path from its sequence of body postures for forward crawling, reversing, and turning and for a broad range of different behavioural phenotypes observed in mutant worms. Worms recently isolated from the wild have a higher effective drag anisotropy than the laboratory-adapted strain N2 and most mutant strains. This means the wild isolates crawl with less surface slip, perhaps reflecting more efficient gaits. The drag anisotropies required to fit the observed locomotion data (70  ±  28 for the wild isolates) are significantly larger than the values measured by directly dragging worms along agar surfaces (3-10 in Rabets et al (2014 Biophys. J. 107 1980-7)). A proposed nonlinear extension of the resistive force theory model also provides accurate predictions, but does not resolve the discrepancy between the parameters required to achieve good path prediction and the experimentally measured parameters. We confirm that linear resistive force theory provides a good effective model of worm crawling that can be used in applications such as whole-animal simulations and advanced tracking algorithms, but that the nature of the physical interaction between worms and their most commonly studied laboratory substrate remains unresolved.

Predicting path from undulations for C. elegans using linear and nonlinear resistive force theory.

PubMed

Keaveny, Eric E; Brown, André E X

2017-03-22

A basic issue in the physics of behaviour is the mechanical relationship between an animal and its surroundings. The model nematode C. elegans provides an excellent platform to explore this relationship due to its anatomical simplicity. Nonetheless, the physics of nematode crawling, in which the worm undulates its body to move on a wet surface, is not completely understood and the mathematical models often used to describe this phenomenon are empirical. We confirm that linear resistive force theory, one such empirical model, is effective at predicting a worm's path from its sequence of body postures for forward crawling, reversing, and turning and for a broad range of different behavioural phenotypes observed in mutant worms. Worms recently isolated from the wild have a higher effective drag anisotropy than the laboratory-adapted strain N2 and most mutant strains. This means the wild isolates crawl with less surface slip, perhaps reflecting more efficient gaits. The drag anisotropies required to fit the observed locomotion data (70  ±  28 for the wild isolates) are significantly larger than the values measured by directly dragging worms along agar surfaces (3-10 in Rabets et al (2014 Biophys. J. 107 1980-7)). A proposed nonlinear extension of the resistive force theory model also provides accurate predictions, but does not resolve the discrepancy between the parameters required to achieve good path prediction and the experimentally measured parameters. We confirm that linear resistive force theory provides a good effective model of worm crawling that can be used in applications such as whole-animal simulations and advanced tracking algorithms, but that the nature of the physical interaction between worms and their most commonly studied laboratory substrate remains unresolved.

Modified Daily Undulating Periodization Model Produces Greater Performance Than a Traditional Configuration in Powerlifters.

PubMed

Zourdos, Michael C; Jo, Edward; Khamoui, Andy V; Lee, Sang-Rok; Park, Bong-Sup; Ormsbee, Michael J; Panton, Lynn B; Contreras, Robert J; Kim, Jeong-Su

2016-03-01

The primary aim of this study was to compare 2 daily undulating periodization (DUP) models on one-repetition maximum (1RM) strength in the squat, bench press, deadlift, total volume (TV) lifted, and temporal hormone response. Eighteen male, college-aged (21.1 ± 1.9 years) powerlifters participated in this study and were assigned to one of 2 groups: (a) traditional DUP training with a weekly training order: hypertrophy-specific, strength-specific, and power-specific training (HSP, n = 9) or (b) modified DUP training with a weekly training order: hypertrophy-specific, power-specific, and strength-specific training (HPS, n = 9). Both groups trained 3 nonconsecutive days per week for 6 weeks and performed the squat, bench press, and deadlift exercises. During hypertrophy and power sessions, subjects performed a fixed number of sets and repetitions but performed repetitions until failure at a given percentage during strength sessions to compare TV. Testosterone and cortisol were measured at pretesting and posttesting and before each strength-specific day. Hypertrophy, power, and strength produced greater TV in squat and bench press (p ≤ 0.05) than HSP, but not for deadlift (p > 0.05). For squat and deadlift, there was no difference between groups for 1RM (p > 0.05); however, HPS exhibited greater increases in 1RM bench press than HSP (p ≤ 0.05). Effect sizes (ES) showed meaningful differences (ES > 0.50) in favor of HPS for squat and bench press 1RM. Testosterone decreased (p ≤ 0.05) at weeks 5 and 6 and cortisol decline at weeks 3 and 4. However, neither hormone was different at posttesting compared with pretesting (p > 0.05). Our findings suggest that an HPS configuration of DUP has enhanced performance benefits compared with HSP.

FreeDam - A webtool for free-electron laser-induced damage in femtosecond X-ray crystallography

NASA Astrophysics Data System (ADS)

Jönsson, H. Olof; Östlin, Christofer; Scott, Howard A.; Chapman, Henry N.; Aplin, Steve J.; Tîmneanu, Nicuşor; Caleman, Carl

2018-03-01

Over the last decade X-ray free-electron laser (XFEL) sources have been made available to the scientific community. One of the most successful uses of these new machines has been protein crystallography. When samples are exposed to the intense short X-ray pulses provided by the XFELs, the sample quickly becomes highly ionized and the atomic structure is affected. Here we present a webtool dubbed FreeDam based on non-thermal plasma simulations, for estimation of radiation damage in free-electron laser experiments in terms of ionization, temperatures and atomic displacements. The aim is to make this tool easily accessible to scientists who are planning and performing experiments at XFELs.

Impact of lithosphere rheology on the dynamic topography

NASA Astrophysics Data System (ADS)

Burov, Evgueni; Gerya, Taras; Koptev, Alexander

2014-05-01

Dynamic topography is a key observable signature of the Earth's and planetary (e.g. Venus) mantle dynamics. In general view, it reflects complex mantle flow patterns, and hence is supposed to correlate at different extent with seismic tomography, SKS fast orientations, geodetic velocity fields and geoid anomalies. However, identification of dynamic topography had no systematic success, specifically in the Earth's continents. Here we argue that lithosphere rheology, in particular, rheological stratification of continents, results in modulation of dynamic topography, converting commonly expected long-wavelength/small amplitude undulations into short-wavelength surface undulations with wide amplitude spectrum, superimposed onto "tectonic" topography. These ideas are explored in 3D using unprecedentedly high resolution numerical experiments (grid step size 2-3 km for 1500x1500x600 km computational area) incorporating realistic rheologically stratified lithosphere. Such high resolution is actually needed to resolve small-scale crustal faulting and inter-layer coupling/uncoupling that shape surface topography. The results reveal strikingly discordant, counterintuitive features of 3D dynamic topography, going far beyond the inferences from previous models. In particular, even weak anisotropic tectonic stress field results both in large-scale small-amplitude dynamic topography and in strongly anisotropic short-wavelength (at least in one direction) dynamic topography with wide amplitude range (from 100 to 2000-3000 m), including basins and ranges and large-scale linear normal and strike-slip faults. Even very slightly pre-stressed strong lithosphere yields and localizes deformation much easier , than un-prestressed one, in response to plume impact and mantle flow. The results shed new light on the importance of lithosphere rheology and active role of lithosphere in mantle-lithosphere interactions as well as on the role of mantle flow and far-field stresses in tectonic

Single-pulse enhanced coherent diffraction imaging of bacteria with an X-ray free-electron laser

NASA Astrophysics Data System (ADS)

Fan, Jiadong; Sun, Zhibin; Wang, Yaling; Park, Jaehyun; Kim, Sunam; Gallagher-Jones, Marcus; Kim, Yoonhee; Song, Changyong; Yao, Shengkun; Zhang, Jian; Zhang, Jianhua; Duan, Xiulan; Tono, Kensuke; Yabashi, Makina; Ishikawa, Tetsuya; Fan, Chunhai; Zhao, Yuliang; Chai, Zhifang; Gao, Xueyun; Earnest, Thomas; Jiang, Huaidong

2016-09-01

High-resolution imaging offers one of the most promising approaches for exploring and understanding the structure and function of biomaterials and biological systems. X-ray free-electron lasers (XFELs) combined with coherent diffraction imaging can theoretically provide high-resolution spatial information regarding biological materials using a single XFEL pulse. Currently, the application of this method suffers from the low scattering cross-section of biomaterials and X-ray damage to the sample. However, XFELs can provide pulses of such short duration that the data can be collected using the “diffract and destroy” approach before the effects of radiation damage on the data become significant. These experiments combine the use of enhanced coherent diffraction imaging with single-shot XFEL radiation to investigate the cellular architecture of Staphylococcus aureus with and without labeling by gold (Au) nanoclusters. The resolution of the images reconstructed from these diffraction patterns were twice as high or more for gold-labeled samples, demonstrating that this enhancement method provides a promising approach for the high-resolution imaging of biomaterials and biological systems.

Single-pulse enhanced coherent diffraction imaging of bacteria with an X-ray free-electron laser

PubMed Central

Fan, Jiadong; Sun, Zhibin; Wang, Yaling; Park, Jaehyun; Kim, Sunam; Gallagher-Jones, Marcus; Kim, Yoonhee; Song, Changyong; Yao, Shengkun; Zhang, Jian; Zhang, Jianhua; Duan, Xiulan; Tono, Kensuke; Yabashi, Makina; Ishikawa, Tetsuya; Fan, Chunhai; Zhao, Yuliang; Chai, Zhifang; Gao, Xueyun; Earnest, Thomas; Jiang, Huaidong

2016-01-01

High-resolution imaging offers one of the most promising approaches for exploring and understanding the structure and function of biomaterials and biological systems. X-ray free-electron lasers (XFELs) combined with coherent diffraction imaging can theoretically provide high-resolution spatial information regarding biological materials using a single XFEL pulse. Currently, the application of this method suffers from the low scattering cross-section of biomaterials and X-ray damage to the sample. However, XFELs can provide pulses of such short duration that the data can be collected using the “diffract and destroy” approach before the effects of radiation damage on the data become significant. These experiments combine the use of enhanced coherent diffraction imaging with single-shot XFEL radiation to investigate the cellular architecture of Staphylococcus aureus with and without labeling by gold (Au) nanoclusters. The resolution of the images reconstructed from these diffraction patterns were twice as high or more for gold-labeled samples, demonstrating that this enhancement method provides a promising approach for the high-resolution imaging of biomaterials and biological systems. PMID:27659203

Single-pulse enhanced coherent diffraction imaging of bacteria with an X-ray free-electron laser.

PubMed

Fan, Jiadong; Sun, Zhibin; Wang, Yaling; Park, Jaehyun; Kim, Sunam; Gallagher-Jones, Marcus; Kim, Yoonhee; Song, Changyong; Yao, Shengkun; Zhang, Jian; Zhang, Jianhua; Duan, Xiulan; Tono, Kensuke; Yabashi, Makina; Ishikawa, Tetsuya; Fan, Chunhai; Zhao, Yuliang; Chai, Zhifang; Gao, Xueyun; Earnest, Thomas; Jiang, Huaidong

2016-09-23

High-resolution imaging offers one of the most promising approaches for exploring and understanding the structure and function of biomaterials and biological systems. X-ray free-electron lasers (XFELs) combined with coherent diffraction imaging can theoretically provide high-resolution spatial information regarding biological materials using a single XFEL pulse. Currently, the application of this method suffers from the low scattering cross-section of biomaterials and X-ray damage to the sample. However, XFELs can provide pulses of such short duration that the data can be collected using the "diffract and destroy" approach before the effects of radiation damage on the data become significant. These experiments combine the use of enhanced coherent diffraction imaging with single-shot XFEL radiation to investigate the cellular architecture of Staphylococcus aureus with and without labeling by gold (Au) nanoclusters. The resolution of the images reconstructed from these diffraction patterns were twice as high or more for gold-labeled samples, demonstrating that this enhancement method provides a promising approach for the high-resolution imaging of biomaterials and biological systems.

Numerical Study of Winter Diurnal Convection Over the City of Krasnoyarsk: Effects of Non-freezing River, Undulating Fog and Steam Devils

NASA Astrophysics Data System (ADS)

Hrebtov, M.; Hanjalić, K.

2017-06-01

We performed a numerical simulation of penetrative convection of an inversion-topped weakly stratified atmospheric boundary layer over urban terrain with a strong localized source of heat and moisture. With some simplifications, the case mimics the real environment of the Krasnoyarsk region in Russia where the non-freezing river Yenisei acts as a thermal and humidity source during winter, generating an undulating fog pattern along the river accompanied with scattered `steam devils'. An idealized full diurnal cycle was simulated using an unsteady Reynolds-averaged Navier-Stokes (RANS) three-equation algebraic flux model and the novel buoyancy-accounting functions for treating the ground boundary conditions. The results show a significant effect of the river on the net temperature and moisture distribution. The localized heat and moisture source leads to strong horizontal convection and marked non-uniformity of humidity concentration in the air. An interplay of several distinct large-scale vortex systems leads to a wavy pattern of moisture plumes over the river. The simulations deal with rare natural phenomena and show the capability of the RANS turbulence closure to capture the main features of flow and scalar fields on an affordable, relatively coarse, computational grid.

Forced convection in the wakes of impacting and sliding bubbles

NASA Astrophysics Data System (ADS)

O'Reilly Meehan, R.; Williams, N. P.; Donnelly, B.; Persoons, T.; Nolan, K.; Murray, D. B.

2017-09-01

Both vapour and gas bubbles are known to significantly increase heat transfer rates between a heated surface and the surrounding fluid, even with no phase change. The cooling structures observed are highly temporal, intricate and complex, with a full description of the surface cooling phenomena not yet available. The current study uses high speed infrared thermography to measure the surface temperature and determine the convective heat flux enhancement associated with the interaction of a single air bubble with a heated, inclined surface. This process can be discretised into the initial impact, in which enhancement levels in excess of 20 times natural convection are observed, and the subsequent sliding behaviour, with more moderate maximum enhancement levels of 8 times natural convection. In both cases, localised regions of suppressed heat transfer are also observed due to the recirculation of warm fluid displaced from the thermal boundary layer with the surface. The cooling patterns observed herein are consistent with the interaction between an undulating wake containing multiple hairpin vortex loops and the thermal boundary layer that exists under the surface, with the initial nature of this enhancement and suppression dependent on the particular point on its rising path at which the bubble impacts the surface.

Rapid microfluidic mixing and liquid jets for studying biomolecular chemical dynamics

NASA Astrophysics Data System (ADS)

Langley, Daniel; Abbey, Brian

2018-01-01

X-ray Free-Electron Lasers (XFELs) offer a unique opportunity to study the structural dynamics of proteins on a femtosecond time-scale. To realize the full potential of XFEL sources for studying time-resolved biomolecular processes however, requires the optimization and development of devices that can both act as a trigger and a delivery mechanism for the system of interest. Here we present numerical simulations and actual devices exploring the conditions required for the development of successful mixing and injection devices for tracking the molecular dynamics of proteins in solution on micro to nanosecond timescales using XFELs. The mechanism for combining reagents employs a threefold combination of pico-liter volumes, lamination and serpentine mixing. Focusing and delivering the sample in solution is achieved using the Gas Dynamic Virtual Nozzle (GDVN), which was specifically developed to produce a micrometer diameter, in-vacuum liquid jet. We explore the influence of parameters such as flow rate and gas pressure on the mixing time and jet stability, and explore the formation of rapid homogeneously mixed jets for `mix-and-inject' liquid scattering experiments at Synchrotron and XFEL facilities.

Nonlinear X-Ray and Auger Spectroscopy at X-Ray Free-Electron Laser Sources

NASA Astrophysics Data System (ADS)

Rohringer, Nina

2015-05-01

X-ray free-electron lasers (XFELs) open the pathway to transfer non-linear spectroscopic techniques to the x-ray domain. A promising all x-ray pump probe technique is based on coherent stimulated electronic x-ray Raman scattering, which was recently demonstrated in atomic neon. By tuning the XFEL pulse to core-excited resonances, a few seed photons in the spectral tail of the XFEL pulse drive an avalanche of resonant inelastic x-ray scattering events, resulting in exponential amplification of the scattering signal by of 6-7 orders of magnitude. Analysis of the line profile of the emitted radiation permits to demonstrate the cross over from amplified spontaneous emission to coherent stimulated resonance scattering. In combination with statistical covariance mapping, a high-resolution spectrum of the resonant inelastic scattering process can be obtained, opening the path to coherent stimulated x-ray Raman spectroscopy. An extension of these ideas to molecules and a realistic feasibility study of stimulated electronic x-ray Raman scattering in CO will be presented. Challenges to realizing stimulated electronic x-ray Raman scattering at present-day XFEL sources will be discussed, corroborated by results of a recent experiment at the LCLS XFEL. Due to the small gain cross section in molecular targets, other nonlinear spectroscopic techniques such as nonlinear Auger spectroscopy could become a powerful alternative. Theory predictions of a novel pump probe technique based on resonant nonlinear Auger spectroscopic will be discussed and the method will be compared to stimulated x-ray Raman spectroscopy.

Microstructural characterization of ultrasonic impact treated aluminum-magnesium alloy

NASA Astrophysics Data System (ADS)

Tran, Kim Ngoc Thi

. Although the highest hardness and yield strength was observed at the UIT surface, the results were mixed with some lower values. The lower hardness and yield strength values at the UIT surface are attributed to the voids and micro cracking/micro voids observed in the deformation layer. The fracture mode was transgranular ductile fracture with micro void coalescence and dimples. Both UIT and untreated material exhibit similar levels of intergranular corrosion susceptibility. Corrosive attack was intergranular with slightly deeper attack in the untreated material. Numerical simulation modeling showed that the calculated residual stress under the tool, ˜80 MPa, is of the same order of magnitude as the compressive residual stresses measured by XRD measurements near the surface. Modeling also showed that high effective strains were induced almost immediately. The UIT process also resulted in rapid localized heating to a maximum temperature of ˜32°C during the first eleven pin tool cycles. The model also showed that during UIT processing, the material undulates as the pin tool impacts and retracts from the surface of the material. The undulations represent the elastic response of the surface to the compressive stresses built up during a pin tool cycle.

Cytoskeleton in trichomonads: II. Immunological and biochemical characterization of the preaxostylar fibres and undulating membrane in the genus Tritrichomonas.

PubMed

Viscogliosi, E; Brugerolle, G

1993-11-12

The production of 3 monoclonal antibodies (MAbs) and the use of immunocytochemical techniques such as immunofluorescence (IF), immunoblotting (IB) and immunogold staining (IGS) reveal that the preaxostylar fibres of Tritrichomonas foetus are composed of at least 3 polypeptides of 55, 53 and 46 kDa. Two of these MAbs cross-react with Tritrichomonas mobilensis and one with Tritrichomonas augusta and Tritrichomonas muris on polypeptides with very similar molecular weights (M.W.) However, no cross-reactivity is seen with the preaxostylar fibres of other trichomonad species tested. These cross-reactivities restricted to the Tritrichomonas genus are similar to those observed with the costa and several explanations are proposed. Similarly, 5 MAbs obtained against Tritrichomonas foetus cytoskeleton label the undulating membrane (UM) by IF and IGS. IB identifies 5 polypeptides of very different M.W. (148, 72, 39, 33 and 23 kDa) in Tritrichomonas foetus. Among them, 2 cross-react by IF and IB in Tritrichomonas mobilensis, one in Tritrichomonas augusta and none in Tritrichomonas muris. These results are in agreement with the electron microscopy studies which have shown that the UM ultrastructure of Tritrichomonas foetus, Tritrichomonas mobilensis and Tritrichomonas augusta are very similar and different from that of Tritrichomonas muris. The lack of cross-reactivity with the lamellar type UM of the Trichomonadinae genera which is very different from the Tritrichomonadinae UM is also demonstrated. Copyright © 1993 Gustav Fischer Verlag · Stuttgart · Jena · New York. Published by Elsevier GmbH.. All rights reserved.

Observation of femtosecond X-ray interactions with matter using an X-ray–X-ray pump–probe scheme

PubMed Central

Inoue, Ichiro; Inubushi, Yuichi; Sato, Takahiro; Tono, Kensuke; Katayama, Tetsuo; Kameshima, Takashi; Ogawa, Kanade; Togashi, Tadashi; Owada, Shigeki; Amemiya, Yoshiyuki; Tanaka, Takashi; Hara, Toru

2016-01-01

Resolution in the X-ray structure determination of noncrystalline samples has been limited to several tens of nanometers, because deep X-ray irradiation required for enhanced resolution causes radiation damage to samples. However, theoretical studies predict that the femtosecond (fs) durations of X-ray free-electron laser (XFEL) pulses make it possible to record scattering signals before the initiation of X-ray damage processes; thus, an ultraintense X-ray beam can be used beyond the conventional limit of radiation dose. Here, we verify this scenario by directly observing femtosecond X-ray damage processes in diamond irradiated with extraordinarily intense (∼1019 W/cm2) XFEL pulses. An X-ray pump–probe diffraction scheme was developed in this study; tightly focused double–5-fs XFEL pulses with time separations ranging from sub-fs to 80 fs were used to excite (i.e., pump) the diamond and characterize (i.e., probe) the temporal changes of the crystalline structures through Bragg reflection. It was found that the pump and probe diffraction intensities remain almost constant for shorter time separations of the double pulse, whereas the probe diffraction intensities decreased after 20 fs following pump pulse irradiation due to the X-ray–induced atomic displacement. This result indicates that sub-10-fs XFEL pulses enable conductions of damageless structural determinations and supports the validity of the theoretical predictions of ultraintense X-ray–matter interactions. The X-ray pump–probe scheme demonstrated here would be effective for understanding ultraintense X-ray–matter interactions, which will greatly stimulate advanced XFEL applications, such as atomic structure determination of a single molecule and generation of exotic matters with high energy densities. PMID:26811449

Nonlocal heat transport and improved target design for x-ray heating studies at x-ray free electron lasers

NASA Astrophysics Data System (ADS)

Hoidn, Oliver; Seidler, Gerald T.

2018-01-01

The extremely high-power densities and short durations of single pulses of x-ray free electron lasers (XFELs) have opened new opportunities in atomic physics, where complex excitation-relaxation chains allow for high ionization states in atomic and molecular systems, and in dense plasma physics, where XFEL heating of solid-density targets can create unique dense states of matter having temperatures on the order of the Fermi energy. We focus here on the latter phenomena, with special emphasis on the problem of optimum target design to achieve high x-ray heating into the warm dense matter (WDM) state. We report fully three-dimensional simulations of the incident x-ray pulse and the resulting multielectron relaxation cascade to model the spatial energy density deposition in multicomponent targets, with particular focus on the effects of nonlocal heat transport due to the motion of high energy photoelectrons and Auger electrons. We find that nanoscale high-Z /low-Z multicomponent targets can give much improved energy density deposition in lower-Z materials, with enhancements reaching a factor of 100. This has three important benefits. First, it greatly enlarges the thermodynamic parameter space in XFEL x-ray heating studies of lower-Z materials. Second, it allows the use of higher probe photon energies, enabling higher-information content x-ray diffraction (XRD) measurements such as in two-color XFEL operations. Third, while this is merely one step toward optimization of x-ray heating target design, the demonstration of the importance of nonlocal heat transport establishes important common ground between XFEL-based x-ray heating studies and more traditional laser plasma methods.

X-ray laser–induced electron dynamics observed by femtosecond diffraction from nanocrystals of Buckminsterfullerene

PubMed Central

Abbey, Brian; Dilanian, Ruben A.; Darmanin, Connie; Ryan, Rebecca A.; Putkunz, Corey T.; Martin, Andrew V.; Wood, David; Streltsov, Victor; Jones, Michael W. M.; Gaffney, Naylyn; Hofmann, Felix; Williams, Garth J.; Boutet, Sébastien; Messerschmidt, Marc; Seibert, M. Marvin; Williams, Sophie; Curwood, Evan; Balaur, Eugeniu; Peele, Andrew G.; Nugent, Keith A.; Quiney, Harry M.

2016-01-01

X-ray free-electron lasers (XFELs) deliver x-ray pulses with a coherent flux that is approximately eight orders of magnitude greater than that available from a modern third-generation synchrotron source. The power density of an XFEL pulse may be so high that it can modify the electronic properties of a sample on a femtosecond time scale. Exploration of the interaction of intense coherent x-ray pulses and matter is both of intrinsic scientific interest and of critical importance to the interpretation of experiments that probe the structures of materials using high-brightness femtosecond XFEL pulses. We report observations of the diffraction of extremely intense 32-fs nanofocused x-ray pulses by a powder sample of crystalline C60. We find that the diffraction pattern at the highest available incident power significantly differs from the one obtained using either third-generation synchrotron sources or XFEL sources operating at low output power and does not correspond to the diffraction pattern expected from any known phase of crystalline C60. We interpret these data as evidence of a long-range, coherent dynamic electronic distortion that is driven by the interaction of the periodic array of C60 molecular targets with intense x-ray pulses of femtosecond duration. PMID:27626076

Two-dimensional imaging detectors for structural biology with X-ray lasers.

PubMed

Denes, Peter

2014-07-17

Our ability to harness the advances in microelectronics over the past decade(s) for X-ray detection has resulted in significant improvements in the state of the art. Biology with X-ray free-electron lasers present daunting detector challenges: all of the photons arrive at the same time, and individual high peak power pulses must be read out shot-by-shot. Direct X-ray detection in silicon pixel detectors--monolithic or hybrid--are the standard for XFELs today. For structural biology, improvements are needed for today's 10-100 Hz XFELs, and further improvements are required for tomorrow's 10+ kHz XFELs. This article will discuss detector challenges, why they arise and ways to overcome them, along with the current state of the art. © 2014 The Author(s) Published by the Royal Society. All rights reserved.

Roadmap of ultrafast x-ray atomic and molecular physics

NASA Astrophysics Data System (ADS)

Young, Linda; Ueda, Kiyoshi; Gühr, Markus; Bucksbaum, Philip H.; Simon, Marc; Mukamel, Shaul; Rohringer, Nina; Prince, Kevin C.; Masciovecchio, Claudio; Meyer, Michael; Rudenko, Artem; Rolles, Daniel; Bostedt, Christoph; Fuchs, Matthias; Reis, David A.; Santra, Robin; Kapteyn, Henry; Murnane, Margaret; Ibrahim, Heide; Légaré, François; Vrakking, Marc; Isinger, Marcus; Kroon, David; Gisselbrecht, Mathieu; L'Huillier, Anne; Wörner, Hans Jakob; Leone, Stephen R.

2018-02-01

X-ray free-electron lasers (XFELs) and table-top sources of x-rays based upon high harmonic generation (HHG) have revolutionized the field of ultrafast x-ray atomic and molecular physics, largely due to an explosive growth in capabilities in the past decade. XFELs now provide unprecedented intensity (1020 W cm-2) of x-rays at wavelengths down to ˜1 Ångstrom, and HHG provides unprecedented time resolution (˜50 attoseconds) and a correspondingly large coherent bandwidth at longer wavelengths. For context, timescales can be referenced to the Bohr orbital period in hydrogen atom of 150 attoseconds and the hydrogen-molecule vibrational period of 8 femtoseconds; wavelength scales can be referenced to the chemically significant carbon K-edge at a photon energy of ˜280 eV (44 Ångstroms) and the bond length in methane of ˜1 Ångstrom. With these modern x-ray sources one now has the ability to focus on individual atoms, even when embedded in a complex molecule, and view electronic and nuclear motion on their intrinsic scales (attoseconds and Ångstroms). These sources have enabled coherent diffractive imaging, where one can image non-crystalline objects in three dimensions on ultrafast timescales, potentially with atomic resolution. The unprecedented intensity available with XFELs has opened new fields of multiphoton and nonlinear x-ray physics where behavior of matter under extreme conditions can be explored. The unprecedented time resolution and pulse synchronization provided by HHG sources has kindled fundamental investigations of time delays in photoionization, charge migration in molecules, and dynamics near conical intersections that are foundational to AMO physics and chemistry. This roadmap coincides with the year when three new XFEL facilities, operating at Ångstrom wavelengths, opened for users (European XFEL, Swiss-FEL and PAL-FEL in Korea) almost doubling the present worldwide number of XFELs, and documents the remarkable progress in HHG capabilities since

Roadmap of ultrafast x-ray atomic and molecular physics

DOE PAGES

Young, Linda; Ueda, Kiyoshi; Gühr, Markus; ...

2018-01-09

X-ray free-electron lasers (XFELs) and table-top sources of x-rays based upon high harmonic generation (HHG) have revolutionized the field of ultrafast x-ray atomic and molecular physics, largely due to an explosive growth in capabilities in the past decade. XFELs now provide unprecedented intensity (10 20 W cm -2) of x-rays at wavelengths down to ~1 Ångstrom, and HHG provides unprecedented time resolution (~50 attoseconds) and a correspondingly large coherent bandwidth at longer wavelengths. For context, timescales can be referenced to the Bohr orbital period in hydrogen atom of 150 attoseconds and the hydrogen-molecule vibrational period of 8 femtoseconds; wavelength scalesmore » can be referenced to the chemically significant carbon K-edge at a photon energy of ~280 eV (44 Ångstroms) and the bond length in methane of ~1 Ångstrom. With these modern x-ray sources one now has the ability to focus on individual atoms, even when embedded in a complex molecule, and view electronic and nuclear motion on their intrinsic scales (attoseconds and Ångstroms). These sources have enabled coherent diffractive imaging, where one can image non-crystalline objects in three dimensions on ultrafast timescales, potentially with atomic resolution. The unprecedented intensity available with XFELs has opened new fields of multiphoton and nonlinear x-ray physics where behavior of matter under extreme conditions can be explored. The unprecedented time resolution and pulse synchronization provided by HHG sources has kindled fundamental investigations of time delays in photoionization, charge migration in molecules, and dynamics near conical intersections that are foundational to AMO physics and chemistry. This roadmap coincides with the year when three new XFEL facilities, operating at Ångstrom wavelengths, opened for users (European XFEL, Swiss-FEL and PAL-FEL in Korea) almost doubling the present worldwide number of XFELs, and documents the remarkable progress in HHG capabilities

Roadmap of ultrafast x-ray atomic and molecular physics

DOE Office of Scientific and Technical Information (OSTI.GOV)

Young, Linda; Ueda, Kiyoshi; Gühr, Markus

X-ray free-electron lasers (XFELs) and table-top sources of x-rays based upon high harmonic generation (HHG) have revolutionized the field of ultrafast x-ray atomic and molecular physics, largely due to an explosive growth in capabilities in the past decade. XFELs now provide unprecedented intensity (10 20 W cm -2) of x-rays at wavelengths down to ~1 Ångstrom, and HHG provides unprecedented time resolution (~50 attoseconds) and a correspondingly large coherent bandwidth at longer wavelengths. For context, timescales can be referenced to the Bohr orbital period in hydrogen atom of 150 attoseconds and the hydrogen-molecule vibrational period of 8 femtoseconds; wavelength scalesmore » can be referenced to the chemically significant carbon K-edge at a photon energy of ~280 eV (44 Ångstroms) and the bond length in methane of ~1 Ångstrom. With these modern x-ray sources one now has the ability to focus on individual atoms, even when embedded in a complex molecule, and view electronic and nuclear motion on their intrinsic scales (attoseconds and Ångstroms). These sources have enabled coherent diffractive imaging, where one can image non-crystalline objects in three dimensions on ultrafast timescales, potentially with atomic resolution. The unprecedented intensity available with XFELs has opened new fields of multiphoton and nonlinear x-ray physics where behavior of matter under extreme conditions can be explored. The unprecedented time resolution and pulse synchronization provided by HHG sources has kindled fundamental investigations of time delays in photoionization, charge migration in molecules, and dynamics near conical intersections that are foundational to AMO physics and chemistry. This roadmap coincides with the year when three new XFEL facilities, operating at Ångstrom wavelengths, opened for users (European XFEL, Swiss-FEL and PAL-FEL in Korea) almost doubling the present worldwide number of XFELs, and documents the remarkable progress in HHG capabilities

Native phasing of x-ray free-electron laser data for a G protein-coupled receptor.

PubMed

Batyuk, Alexander; Galli, Lorenzo; Ishchenko, Andrii; Han, Gye Won; Gati, Cornelius; Popov, Petr A; Lee, Ming-Yue; Stauch, Benjamin; White, Thomas A; Barty, Anton; Aquila, Andrew; Hunter, Mark S; Liang, Mengning; Boutet, Sébastien; Pu, Mengchen; Liu, Zhi-Jie; Nelson, Garrett; James, Daniel; Li, Chufeng; Zhao, Yun; Spence, John C H; Liu, Wei; Fromme, Petra; Katritch, Vsevolod; Weierstall, Uwe; Stevens, Raymond C; Cherezov, Vadim

2016-09-01

Serial femtosecond crystallography (SFX) takes advantage of extremely bright and ultrashort pulses produced by x-ray free-electron lasers (XFELs), allowing for the collection of high-resolution diffraction intensities from micrometer-sized crystals at room temperature with minimal radiation damage, using the principle of "diffraction-before-destruction." However, de novo structure factor phase determination using XFELs has been difficult so far. We demonstrate the ability to solve the crystallographic phase problem for SFX data collected with an XFEL using the anomalous signal from native sulfur atoms, leading to a bias-free room temperature structure of the human A 2A adenosine receptor at 1.9 Å resolution. The advancement was made possible by recent improvements in SFX data analysis and the design of injectors and delivery media for streaming hydrated microcrystals. This general method should accelerate structural studies of novel difficult-to-crystallize macromolecules and their complexes.

Emerging opportunities in structural biology with X-ray free-electron lasers

PubMed Central

Schlichting, Ilme; Miao, Jianwei

2012-01-01

X-ray free-electron lasers (X-FELs) produce X-ray pulses with extremely brilliant peak intensity and ultrashort pulse duration. It has been proposed that radiation damage can be “outrun” by using an ultra intense and short X-FEL pulse that passes a biological sample before the onset of significant radiation damage. The concept of “diffraction-before-destruction” has been demonstrated recently at the Linac Coherent Light Source, the first operational hard X-ray FEL, for protein nanocrystals and giant virus particles. The continuous diffraction patterns from single particles allow solving the classical “phase problem” by the oversampling method with iterative algorithms. If enough data are collected from many identical copies of a (biological) particle, its three-dimensional structure can be reconstructed. We review the current status and future prospects of serial femtosecond crystallography (SFX) and single-particle coherent diffraction imaging (CDI) with X-FELs. PMID:22922042

Analyzing the effect of slotted foil on radiation pulse profile in a mode locked afterburner X-ray free electron laser

NASA Astrophysics Data System (ADS)

Kumar, Sandeep; Hur, Min Sup; Chung, Moses

2017-06-01

Extremely short X-ray pulses in the attosecond (as) range are important tools for ultrafast dynamics, high resolution microscopy, and nuclear dynamics study. In this paper, we numerically examine the generation of gigawatt (GW) mode-locked (ML) multichromatic X-rays using the parameters of the Pohang Accelerator Laboratory (PAL)-X-ray free electron laser (XFEL), the Korean XFEL. In this vein, we analyze the ML-FEL [Thompson and McNeil, Phys. Rev. Lett. 100, 203901 (2008)] and mode-locked afterburner (MLAB) FEL [Dunning et al., Phys. Rev. Lett. 110, 104801 (2013)] schemes on the hard X-ray beamline of the PAL-XFEL. Using the ML scheme, we numerically demonstrate a train of radiation pulses in the hard X-ray (photon energy ˜12.4 keV) with 3.5 GW power and 16 as full-width half maximum (FWHM) pulse duration. On the other hand, using the MLAB scheme, a train of radiation pulses with 3 GW power and 1 as FWHM (900 zs in RMS) pulse duration has been obtained at 12.4 keV photon energy. Both schemes generate broadband, discrete, and coherent spectrum compared to the XFEL's narrowband spectrum. Furthermore, the effect of slotted foil is also studied first time on the MLAB-FEL output. Numerical comparisons show that the temporal structure of the MLAB-FEL output can be improved significantly by the use of the slotted foil. Such short X-ray pulses at XFEL facilities will allow the studies of electron-nuclear and nuclear dynamics in atoms or molecules, and the broadband radiation will substantially improve the efficiency of the experimental techniques such as X-ray crystallography and spectroscopy, paving the way for outstanding progress in biology and material science.

Self-propelled swimming simulations of bio-inspired smart structures.

PubMed

Daghooghi, Mohsen; Borazjani, Iman

2016-08-09

This paper presents self-propelled swimming simulations of a foldable structure, whose folded configuration is a box. For self-locomotion through water the structure unfolds and undulates. To guide the design of the structure and understand how it should undulate to achieve either highest speed or maximize efficiency during locomotion, several kinematic parameters were systematically varied in the simulations: the wave type (standing wave versus traveling wave), the smoothness of undulations (smooth undulations versus undulations of rigid links), the mode of undulations (carangiform: mackerel-like versus anguilliform: eel-like undulations), and the maximum amplitude of undulations. We show that the swimmers with standing wave are slow and inefficient because they are not able to produce thrust using the added-mass mechanism. Among the tested types of undulation at low Reynolds number (Re) regime of [Formula: see text] (Strouhal number of about 1.0), structures that employ carangiform undulations can swim faster, whereas anguilliform swimmers are more economic, i.e., using less power they can swim a longer distance. Another finding of our simulations is that structures which are made of rigid links are typically less efficient (lower propulsive and power efficiencies and also lower swimming speed) compared with smoothly undulating ones because a higher added-mass force is generated by smooth undulations. The wake of all the swimmers bifurcated at the low Re regime because of the higher lateral relative to the axial velocity (high Strouhal number) that advects the vortices laterally creating a double row of vortices in the wake. In addition, we show that the wake cannot be used to predict the performance of the swimmers because the net force in each cycle is zero for self-propelled bodies and the pressure term is not negligible compared to the other terms.

DOE Office of Scientific and Technical Information (OSTI.GOV)

Tsuchiya, Kimichika, E-mail: kimichika.tsuchiya@kek.jp; Adachi, Masahiro; Shioya, Tatsuro

At the 2.5-GeV Photon Factory (PF) storage ring, we recently constructed four new undulators known as U#02-2, U#13, SGU#15, and U#28 for BL02, BL13, BL15, and BL28, respectively. SGU#15 is an in-vacuum undulator with a period length of 17.6 mm. The other three undulators are elliptically polarizing undulators (EPUs) for the vacuum ultraviolet and soft X-ray (VUV-SX) light sources to obtain various polarization states. We constructed these new undulators by fiscal 2013 and step by step installed them in the PF ring. We describe the details of the construction of these new undulators in this report.

DOE Office of Scientific and Technical Information (OSTI.GOV)

WATANABE, T.; LIU, D.; MURPHY, J.B.

The strong focusing VISA undulator is presented in this report. The proposed FEL will operate at the 1 {micro}m water window. Extensive simulations were performed to optimize an FEL amplifier based on the two-meter long VISA undulator which has a period of 1.8 cm and an undulator parameter K = 1.26. The betatron function inside the VISA undulator is about 30 cm. For an electron beam with a peak current {approx}1 kA and a normalized emittance of 5 mm-mrad, the FEL peak power can exceed 1 GW within the 2 m VISA undulator using a 5 kW peak power seedmore » laser. Such a device can produce a megawatt of average power for a 700 MHz rep rate. The transverse distribution of the FEL radiation along the undulator, as well as after the undulator, is explored by numerical simulation. The FEL power density at 5 m downstream from the undulator is less than 100 kW/cm{sup 2} for this MW-class FEL. We will also discuss the feasibility of an experimental demonstration of the laser seeded FEL amplifier based on the 2-m VISA undulator at the NSLS Source Development Lab (SDL).« less

Curved diamond-crystal spectrographs for x-ray free-electron laser noninvasive diagnostics.

PubMed

Terentyev, Sergey; Blank, Vladimir; Kolodziej, Tomasz; Shvyd'ko, Yuri

2016-12-01

We report on the manufacturing and X-ray tests of bent diamond-crystal X-ray spectrographs, designed for noninvasive diagnostics of the X-ray free-electron laser (XFEL) spectra in the spectral range from 5 to 15 keV. The key component is a curved, 20-μm thin, single crystalline diamond triangular plate in the (110) orientation. The radius of curvature can be varied between R = 0.6 m and R = 0.1 m in a controlled fashion, ensuring imaging in a spectral window of up to 60 eV for ≃8 keV X-rays. All of the components of the bending mechanism (about 10 parts) are manufactured from diamond, thus ensuring safe operations in intense XFEL beams. The spectrograph is transparent to 88% for 5-keV photons and to 98% for 15-keV photons. Therefore, it can be used for noninvasive diagnostics of the X-ray spectra during XFEL operations.

Beam-Dynamics Analysis of Long-Range Wakefield Effects on the SCRF Cavities at the Fast Facility

DOE Office of Scientific and Technical Information (OSTI.GOV)

Shin, Young-Min; Bishofberger, Kip; Carlsten, Bruce

Long-range wakefields in superconducting RF (SCRF) cavities create complicated effects on beam dynamics in SCRF-based FEL beamlines. The driving bunch excites effectively an infinite number of structure modes (including HOMs) which oscillate within the SCRF cavity. Couplers with loads are used to damp the HOMs. However, these HOMs can persist for long periods of time in superconducting structures, which leads to long-range wakefields. Clear understanding of the long-range wakefield effects is a critical element for risk mitigation of future SCRF accelerators such as XFEL at DESY, LCLS-II XFEL, and MaRIE XFEL. We are currently developing numerical tools for simulating long-rangemore » wakefields in SCRF accelerators and plan to experimentally verify the tools by measuring these wakefields at the Fermilab Accelerator Science and Technology (FAST) facility. This paper previews the experimental conditions at the FAST 50 MeV beamline based on the simulation results.« less

Curved diamond-crystal spectrographs for x-ray free-electron laser noninvasive diagnostics

DOE PAGES

Terentyev, Sergey; Blank, Vladimir; Kolodziej, Tomasz; ...

2016-12-29

Here, we report on the manufacturing and X-ray tests of bent diamond-crystal X-ray spectrographs, designed for noninvasive diagnostics of the X-ray free-electron laser (XFEL) spectra in the spectral range from 5 to 15 keV. The key component is a curved, 20-µm thin, single crystalline diamond triangular plate in the (110) orientation. The radius of curvature can be varied between R = 0.6 m and R = 0.1 m in a controlled fashion, ensuring imaging in a spectral window of up to 60 eV for ' 8 keV X-rays. All of the components of the bending mechanism (about 10 parts) aremore » manufactured from diamond, thus ensuring safe operations in intense XFEL beams. The spectrograph is transparent to 88% for 5-keV photons, and to 98% for 15-keV photons. Therefore, it can be used for noninvasive diagnostics of the X-ray spectra during XFEL operations.« less

Flow-aligned, single-shot fiber diffraction using a femtosecond X-ray free-electron laser

DOE PAGES

Popp, David; Loh, N. Duane; Zorgati, Habiba; ...

2017-06-02

A major goal for X-ray free-electron laser (XFEL) based science is to elucidate structures of biological molecules without the need for crystals. Filament systems may provide some of the first single macromolecular structures elucidated by XFEL radiation, since they contain one-dimensional translational symmetry and thereby occupy the diffraction intensity region between the extremes of crystals and single molecules. Here, we demonstrate flow alignment of as few as 100 filaments ( Escherichia coli pili, F-actin, and amyloid fibrils), which when intersected by femtosecond X-ray pulses result in diffraction patterns similar to those obtained from classical fiber diffraction studies. We also determinemore » that F-actin can be flow-aligned to a disorientation of approximately 5 degrees. Using this XFEL-based technique, we determine that gelsolin amyloids are comprised of stacked β-strands running perpendicular to the filament axis, and that a range of order from fibrillar to crystalline is discernable for individual α-synuclein amyloids.« less

Flow-aligned, single-shot fiber diffraction using a femtosecond X-ray free-electron laser

DOE Office of Scientific and Technical Information (OSTI.GOV)

Popp, David; Loh, N. Duane; Zorgati, Habiba

A major goal for X-ray free-electron laser (XFEL) based science is to elucidate structures of biological molecules without the need for crystals. Filament systems may provide some of the first single macromolecular structures elucidated by XFEL radiation, since they contain one-dimensional translational symmetry and thereby occupy the diffraction intensity region between the extremes of crystals and single molecules. Here, we demonstrate flow alignment of as few as 100 filaments ( Escherichia coli pili, F-actin, and amyloid fibrils), which when intersected by femtosecond X-ray pulses result in diffraction patterns similar to those obtained from classical fiber diffraction studies. We also determinemore » that F-actin can be flow-aligned to a disorientation of approximately 5 degrees. Using this XFEL-based technique, we determine that gelsolin amyloids are comprised of stacked β-strands running perpendicular to the filament axis, and that a range of order from fibrillar to crystalline is discernable for individual α-synuclein amyloids.« less

High-speed fixed-target serial virus crystallography

PubMed Central

Roedig, Philip; Ginn, Helen M.; Pakendorf, Tim; Sutton, Geoff; Harlos, Karl; Walter, Thomas S.; Meyer, Jan; Fischer, Pontus; Duman, Ramona; Vartiainen, Ismo; Reime, Bernd; Warmer, Martin; Brewster, Aaron S.; Young, Iris D.; Michels-Clark, Tara; Sauter, Nicholas K.; Kotecha, Abhay; Kelly, James; Rowlands, David J.; Sikorsky, Marcin; Nelson, Silke; Damiani, Daniel S.; Alonso-Mori, Roberto; Ren, Jingshan; Fry, Elizabeth E.; David, Christian; Stuart, David I.; Wagner, Armin; Meents, Alke

2017-01-01

We report a method for serial X-ray crystallography at X-ray free electron lasers (XFELs), which allows for full use of the current 120 Hz repetition rate of the Linear Coherent Light Source (LCLS). Using a micro-patterned silicon chip in combination with the high-speed Roadrunner goniometer for sample delivery we were able to determine the crystal structures of a picornavirus, bovine enterovirus 2 (BEV2), and the cytoplasmic polyhedrosis virus type 18 polyhedrin. Total data collection times were less than 14 and 10 minutes, respectively. Our method requires only micrograms of sample and will therefore broaden the applicability of serial femtosecond crystallography to challenging projects for which only limited sample amounts are available. By synchronizing the sample exchange to the XFEL repetition rate, our method allows for the most efficient use of the limited beamtime available at XFELs and should enable a substantial increase in sample throughput at these facilities. PMID:28628129

High-speed fixed-target serial virus crystallography

DOE PAGES

Roedig, Philip; Ginn, Helen M.; Pakendorf, Tim; ...

2017-06-19

Here, we report a method for serial X-ray crystallography at X-ray free-electron lasers (XFELs), which allows for full use of the current 120-Hz repetition rate of the Linear Coherent Light Source (LCLS). Using a micropatterned silicon chip in combination with the high-speed Roadrunner goniometer for sample delivery, we were able to determine the crystal structures of the picornavirus bovine enterovirus 2 (BEV2) and the cytoplasmic polyhedrosis virus type 18 polyhedrin, with total data collection times of less than 14 and 10 min, respectively. Our method requires only micrograms of sample and should therefore broaden the applicability of serial femtosecond crystallographymore » to challenging projects for which only limited sample amounts are available. By synchronizing the sample exchange to the XFEL repetition rate, our method allows for most efficient use of the limited beam time available at XFELs and should enable a substantial increase in sample throughput at these facilities.« less

High-speed fixed-target serial virus crystallography

DOE Office of Scientific and Technical Information (OSTI.GOV)

Roedig, Philip; Ginn, Helen M.; Pakendorf, Tim

Here, we report a method for serial X-ray crystallography at X-ray free-electron lasers (XFELs), which allows for full use of the current 120-Hz repetition rate of the Linear Coherent Light Source (LCLS). Using a micropatterned silicon chip in combination with the high-speed Roadrunner goniometer for sample delivery, we were able to determine the crystal structures of the picornavirus bovine enterovirus 2 (BEV2) and the cytoplasmic polyhedrosis virus type 18 polyhedrin, with total data collection times of less than 14 and 10 min, respectively. Our method requires only micrograms of sample and should therefore broaden the applicability of serial femtosecond crystallographymore » to challenging projects for which only limited sample amounts are available. By synchronizing the sample exchange to the XFEL repetition rate, our method allows for most efficient use of the limited beam time available at XFELs and should enable a substantial increase in sample throughput at these facilities.« less

Curved diamond-crystal spectrographs for x-ray free-electron laser noninvasive diagnostics

DOE Office of Scientific and Technical Information (OSTI.GOV)

Terentyev, Sergey; Blank, Vladimir; Kolodziej, Tomasz

Here, we report on the manufacturing and X-ray tests of bent diamond-crystal X-ray spectrographs, designed for noninvasive diagnostics of the X-ray free-electron laser (XFEL) spectra in the spectral range from 5 to 15 keV. The key component is a curved, 20-µm thin, single crystalline diamond triangular plate in the (110) orientation. The radius of curvature can be varied between R = 0.6 m and R = 0.1 m in a controlled fashion, ensuring imaging in a spectral window of up to 60 eV for ' 8 keV X-rays. All of the components of the bending mechanism (about 10 parts) aremore » manufactured from diamond, thus ensuring safe operations in intense XFEL beams. The spectrograph is transparent to 88% for 5-keV photons, and to 98% for 15-keV photons. Therefore, it can be used for noninvasive diagnostics of the X-ray spectra during XFEL operations.« less

DOE Office of Scientific and Technical Information (OSTI.GOV)

Libkind, M.; Bertolini, L.; Duffy, P.

As part of the research and development effort for a 4th generation light source, we have designed a 4-meter long Free-Electron Laser (FEL) undulator. The undulator will be installed at the Accelerator Test Facility (ATF) at Brookhaven National Laboratory to conduct a Self-Amplified Spontaneous Emission (SASE) demonstration. The demonstration is called VISA, which stands for "Visible to Infrared SASE Amplifier." The undulator consists of 440 permanent dipole magnets per meter which are supported and aligned on a precision strongback. Focusing and defocusing permanent quadrupole magnets are also supported by the strongback. Each of the 4 one-meter sections of undulator aremore » kinematically supported and housed within the vacuum vessel. The undulator and the vacuum vessel are supported independently to eliminate undulator misalignment during vacuum pump-down of the vessel. We describe the design requirements and features of the undulator, vacuum vessel and support system.« less

DOE Office of Scientific and Technical Information (OSTI.GOV)

Dong, Xiaohao, E-mail: xiaohao.dong@xfel.eu; Sinn, Harald, E-mail: harald.sinn@xfel.eu; Shu, Deming, E-mail: shu@aps.anl.gov

An artificial channel-cut crystal monochromator for the hard X-Ray beamlines of SASE 1&2, cryogenically cooled by the so-called pulse tube cooler (cryorefrigerator), is currently under development at the European XFEL ( http://www.xfel.eu/ ). The fabrication is on-going. We present here the crystal optical consideration and the novel cooling configuration, according to the X-Ray FEL pulses proprieties. The mechanical design improvements are pointed out as well to implement such kind of monochromator based on the previous similar design.

DOE Office of Scientific and Technical Information (OSTI.GOV)

Dong, Xiaohao; Shu, Deming; Sinn, Harald

An artificial channel-cut crystal monochromator for the hard X-Ray beamlines of SASE 1&2, cryogenically cooled by the so-called pulse tube cooler (cryorefrigerator), is currently under development at the European XFEL (http://www.xfel.eu/). The fabrication is on-going. We present here the crystal optical consideration and the novel cooling configuration, according to the X-Ray FEL pulses proprieties. The mechanical design improvements are pointed out as well to implement such kind of monochromator based on the previous similar design.

Modeling the gain of inner-shell X-ray laser transitions in neon, argon, and copper driven by X-ray free electron laser radiation using photo-ionization and photo-excitation processes

DOE Office of Scientific and Technical Information (OSTI.GOV)

Nilsen, Joseph

2015-12-16

Using an X-ray free electron laser (XFEL) at 960 eV to photo-ionize the 1s electron in neutral neon followed by lasing on the 2p-1s transition in singly-ionized neon, an inner-shell X-ray laser was demonstrated at 849 eV in singly-ionized neon gas several years ago. It took decades to demonstrate this scheme, because it required a very strong X-ray source that could photo-ionize the 1s (K shell) electron in neon on a timescale comparable to the intrinsic Auger lifetime in neon of 2 fs. In this paper, we model the neon inner shell X-ray laser under similar conditions to those usedmore » in the XFEL experiments at the SLAC Linac Coherent Light Source (LCLS), and show how we can improve the efficiency of the neon laser and reduce the drive requirements by tuning the XFEL to the 1s-3p transition in neutral neon in order to create gain on the 2p-1s line in neutral neon. We also show how the XFEL could be used to photo-ionize L-shell electrons to drive gain on n = 3–2 transitions in singly-ionized Ar and Cu plasmas. Furthermore, these bright, coherent, and monochromatic X-ray lasers may prove very useful for doing high-resolution spectroscopy and for studying non-linear process in the X-ray regime.« less

Analysis of heat generation of lithium ion rechargeable batteries used in implantable battery systems for driving undulation pump ventricular assist device.

PubMed

Okamoto, Eiji; Nakamura, Masatoshi; Akasaka, Yuhta; Inoue, Yusuke; Abe, Yusuke; Chinzei, Tsuneo; Saito, Itsuro; Isoyama, Takashi; Mochizuki, Shuichi; Imachi, Kou; Mitamura, Yoshinori

2007-07-01

We have developed internal battery systems for driving an undulation pump ventricular assist device using two kinds of lithium ion rechargeable batteries. The lithium ion rechargeable batteries have high energy density, long life, and no memory effect; however, rise in temperature of the lithium ion rechargeable battery is a critical issue. Evaluation of temperature rise by means of numerical estimation is required to develop an internal battery system. Temperature of the lithium ion rechargeable batteries is determined by ohmic loss due to internal resistance, chemical loss due to chemical reaction, and heat release. Measurement results of internal resistance (R(cell)) at an ambient temperature of 37 degrees C were 0.1 Omega in the lithium ion (Li-ion) battery and 0.03 Omega in the lithium polymer (Li-po) battery. Entropy change (DeltaS) of each battery, which leads to chemical loss, was -1.6 to -61.1 J/(mol.K) in the Li-ion battery and -9.6 to -67.5 J/(mol.K) in the Li-po battery depending on state of charge (SOC). Temperature of each lithium ion rechargeable battery under a discharge current of 1 A was estimated by finite element method heat transfer analysis at an ambient temperature of 37 degrees C configuring with measured R(cell) and measured DeltaS in each SOC. Results of estimation of time-course change in the surface temperature of each battery coincided with results of measurement results, and the success of the estimation will greatly contribute to the development of an internal battery system using lithium ion rechargeable batteries.

Start-to-end simulation of single-particle imaging using ultra-short pulses at the European X-ray Free-Electron Laser

DOE PAGES

Fortmann-Grote, Carsten; Buzmakov, Alexey; Jurek, Zoltan; ...

2017-09-01

Single-particle imaging with X-ray free-electron lasers (XFELs) has the potential to provide structural information at atomic resolution for non-crystalline biomolecules. This potential exists because ultra-short intense pulses can produce interpretable diffraction data notwithstanding radiation damage. This paper explores the impact of pulse duration on the interpretability of diffraction data using comprehensive and realistic simulations of an imaging experiment at the European X-ray Free-Electron Laser. In conclusion, it is found that the optimal pulse duration for molecules with a few thousand atoms at 5 keV lies between 3 and 9 fs.

Start-to-end simulation of single-particle imaging using ultra-short pulses at the European X-ray Free-Electron Laser

DOE Office of Scientific and Technical Information (OSTI.GOV)

Fortmann-Grote, Carsten; Buzmakov, Alexey; Jurek, Zoltan

Single-particle imaging with X-ray free-electron lasers (XFELs) has the potential to provide structural information at atomic resolution for non-crystalline biomolecules. This potential exists because ultra-short intense pulses can produce interpretable diffraction data notwithstanding radiation damage. This paper explores the impact of pulse duration on the interpretability of diffraction data using comprehensive and realistic simulations of an imaging experiment at the European X-ray Free-Electron Laser. In conclusion, it is found that the optimal pulse duration for molecules with a few thousand atoms at 5 keV lies between 3 and 9 fs.

Start-to-end simulation of single-particle imaging using ultra-short pulses at the European X-ray Free-Electron Laser

PubMed Central

Buzmakov, Alexey; Jurek, Zoltan; Loh, Ne-Te Duane; Samoylova, Liubov; Santra, Robin; Schneidmiller, Evgeny A.; Tschentscher, Thomas; Yakubov, Sergey; Yoon, Chun Hong; Yurkov, Michael V.; Ziaja-Motyka, Beata; Mancuso, Adrian P.

2017-01-01

Single-particle imaging with X-ray free-electron lasers (XFELs) has the potential to provide structural information at atomic resolution for non-crystalline biomolecules. This potential exists because ultra-short intense pulses can produce interpretable diffraction data notwithstanding radiation damage. This paper explores the impact of pulse duration on the interpretability of diffraction data using comprehensive and realistic simulations of an imaging experiment at the European X-ray Free-Electron Laser. It is found that the optimal pulse duration for molecules with a few thousand atoms at 5 keV lies between 3 and 9 fs. PMID:28989713

A comprehensive simulation framework for imaging single particles and biomolecules at the European X-ray Free-Electron Laser

PubMed Central

Yoon, Chun Hong; Yurkov, Mikhail V.; Schneidmiller, Evgeny A.; Samoylova, Liubov; Buzmakov, Alexey; Jurek, Zoltan; Ziaja, Beata; Santra, Robin; Loh, N. Duane; Tschentscher, Thomas; Mancuso, Adrian P.

2016-01-01

The advent of newer, brighter, and more coherent X-ray sources, such as X-ray Free-Electron Lasers (XFELs), represents a tremendous growth in the potential to apply coherent X-rays to determine the structure of materials from the micron-scale down to the Angstrom-scale. There is a significant need for a multi-physics simulation framework to perform source-to-detector simulations for a single particle imaging experiment, including (i) the multidimensional simulation of the X-ray source; (ii) simulation of the wave-optics propagation of the coherent XFEL beams; (iii) atomistic modelling of photon-material interactions; (iv) simulation of the time-dependent diffraction process, including incoherent scattering; (v) assembling noisy and incomplete diffraction intensities into a three-dimensional data set using the Expansion-Maximisation-Compression (EMC) algorithm and (vi) phase retrieval to obtain structural information. We demonstrate the framework by simulating a single-particle experiment for a nitrogenase iron protein using parameters of the SPB/SFX instrument of the European XFEL. This exercise demonstrably yields interpretable consequences for structure determination that are crucial yet currently unavailable for experiment design. PMID:27109208

Time-resolved structural studies with serial crystallography: A new light on retinal proteins

PubMed Central

Panneels, Valérie; Wu, Wenting; Tsai, Ching-Ju; Nogly, Przemek; Rheinberger, Jan; Jaeger, Kathrin; Cicchetti, Gregor; Gati, Cornelius; Kick, Leonhard M.; Sala, Leonardo; Capitani, Guido; Milne, Chris; Padeste, Celestino; Pedrini, Bill; Li, Xiao-Dan; Standfuss, Jörg; Abela, Rafael; Schertler, Gebhard

2015-01-01

Structural information of the different conformational states of the two prototypical light-sensitive membrane proteins, bacteriorhodopsin and rhodopsin, has been obtained in the past by X-ray cryo-crystallography and cryo-electron microscopy. However, these methods do not allow for the structure determination of most intermediate conformations. Recently, the potential of X-Ray Free Electron Lasers (X-FELs) for tracking the dynamics of light-triggered processes by pump-probe serial femtosecond crystallography has been demonstrated using 3D-micron-sized crystals. In addition, X-FELs provide new opportunities for protein 2D-crystal diffraction, which would allow to observe the course of conformational changes of membrane proteins in a close-to-physiological lipid bilayer environment. Here, we describe the strategies towards structural dynamic studies of retinal proteins at room temperature, using injector or fixed-target based serial femtosecond crystallography at X-FELs. Thanks to recent progress especially in sample delivery methods, serial crystallography is now also feasible at synchrotron X-ray sources, thus expanding the possibilities for time-resolved structure determination. PMID:26798817

DOE Office of Scientific and Technical Information (OSTI.GOV)

Shanks, Katherine S.; Philipp, Hugh T.; Weiss, Joel T.

Experiments at storage ring light sources as well as at next-generation light sources increasingly require detectors capable of high dynamic range operation, combining low-noise detection of single photons with large pixel well depth. XFEL sources in particular provide pulse intensities sufficiently high that a purely photon-counting approach is impractical. The High Dynamic Range Pixel Array Detector (HDR-PAD) project aims to provide a dynamic range extending from single-photon sensitivity to 10{sup 6} photons/pixel in a single XFEL pulse while maintaining the ability to tolerate a sustained flux of 10{sup 11} ph/s/pixel at a storage ring source. Achieving these goals involves themore » development of fast pixel front-end electronics as well as, in the XFEL case, leveraging the delayed charge collection due to plasma effects in the sensor. A first prototype of essential electronic components of the HDR-PAD readout ASIC, exploring different options for the pixel front-end, has been fabricated. Here, the HDR-PAD concept and preliminary design will be described.« less

A comprehensive simulation framework for imaging single particles and biomolecules at the European X-ray Free-Electron Laser

NASA Astrophysics Data System (ADS)

Yoon, Chun Hong; Yurkov, Mikhail V.; Schneidmiller, Evgeny A.; Samoylova, Liubov; Buzmakov, Alexey; Jurek, Zoltan; Ziaja, Beata; Santra, Robin; Loh, N. Duane; Tschentscher, Thomas; Mancuso, Adrian P.

2016-04-01

The advent of newer, brighter, and more coherent X-ray sources, such as X-ray Free-Electron Lasers (XFELs), represents a tremendous growth in the potential to apply coherent X-rays to determine the structure of materials from the micron-scale down to the Angstrom-scale. There is a significant need for a multi-physics simulation framework to perform source-to-detector simulations for a single particle imaging experiment, including (i) the multidimensional simulation of the X-ray source; (ii) simulation of the wave-optics propagation of the coherent XFEL beams; (iii) atomistic modelling of photon-material interactions; (iv) simulation of the time-dependent diffraction process, including incoherent scattering; (v) assembling noisy and incomplete diffraction intensities into a three-dimensional data set using the Expansion-Maximisation-Compression (EMC) algorithm and (vi) phase retrieval to obtain structural information. We demonstrate the framework by simulating a single-particle experiment for a nitrogenase iron protein using parameters of the SPB/SFX instrument of the European XFEL. This exercise demonstrably yields interpretable consequences for structure determination that are crucial yet currently unavailable for experiment design.

Transequatorial Propagation and Depletion Precursors

NASA Astrophysics Data System (ADS)

Miller, E. S.; Bust, G. S.; Kaeppler, S. R.; Frissell, N. A.; Paxton, L. J.

2014-12-01

The bottomside equatorial ionosphere in the afternoon and evening sector frequently evolves rapidly from smoothly stratified to violently unstable with large wedges of depleted plasma growing through to the topside on timescales of a few tens of minutes. These depletions have numerous practical impacts on radio propagation, including amplitude scintillation, field-aligned irregularity scatter, HF blackouts, and long-distance transequatorial propagation at frequencies above the MUF. Practical impacts notwithstanding, the pathways and conditions under which depletions form remain a topic of vigorous inquiry some 80 years after their first report. Structuring of the pre-sunset ionosphere---morphology of the equatorial anomalies and long-wavelength undulations of the isodensity contours on the bottomside---are likely to hold some clues to conditions that are conducive to depletion formation. The Conjugate Depletion Experiment is an upcoming transequatorial forward-scatter HF/VHF experiment to investigate pre-sunset undulations and their connection with depletion formation. We will present initial results from the Conjugate Depletion Experiment, as well as a companion analysis of a massive HF propagation data set.

Multi-phase arrival tracking using tetrahedral cells within a 3D layered titled transversely isotropic anisotropic model involving undulating topography and irregular interfaces

NASA Astrophysics Data System (ADS)

Li, Xing-Wang; Bai, Chao-Ying; Yue, Xiao-Peng; Greenhalgh, Stewart

2018-02-01

To overcome a major problem in current ray tracing methods, which are only capable of tracing first arrivals, and occasionally primary reflections (or mode conversions) in regular cell models, we extend in this paper the multistage triangular shortest-path method (SPM) into 3D titled transversely isotropic (TTI) anisotropic media. The proposed method is capable of tracking multi-phase arrivals composed of any kind of combinations of transmissions, mode conversions and reflections. In model parameterization, five elastic parameters, plus two angles defining the titled axis of symmetry of TTI media are sampled at the primary nodes of the tetrahedral cell, and velocity value at secondary node positions are linked by a tri-linear velocity interpolation function to the primary node velocity value of that of a tetrahedral cell, from which the group velocities of the three wave modes (qP, qSV and qSH) are computed. The multistage triangular SPM is used to track multi-phase arrivals. The uniform anisotropic test indicates that the numerical solution agrees well with the analytic solution, thus verifying the accuracy of the methodology. Several simulations and comparison results for heterogeneous models show that the proposed algorithm is able to efficiently and accurately approximate undulating surface topography and irregular subsurface velocity discontinuities. It is suitable for any combination of multi-phase arrival tracking in arbitrary tilt angle TTI media and can accommodate any magnitude of anisotropy.

MaRIE X-Ray Free-Electron Laser Pre-Conceptual Design

DOE Office of Scientific and Technical Information (OSTI.GOV)

Carlsten, Bruce E.; Barnes, Cris W.; Bishofberger, Kip A.

2011-01-01

The proposed Matter-Radiation Interactions in Extremes (MaRIE) facility at the Los Alamos National Laboratory will include a 50-keV X-Ray Free-Electron Laser (XFEL), a significant extension from planned and existing XFEL facilities. To prevent an unacceptably large energy spread arsing from energy diffusion, the electron beam energy should not exceed 20 GeV, which puts a significant constraint on the beam emittance. A 100-pC baseline design is presented along with advanced technology options to increase the photon flux and to decrease the spectral bandwidth through pre-bunching the electron beam.

Protein crystal screening and characterization for serial femtosecond nanocrystallography

PubMed Central

Darmanin, Connie; Strachan, Jamie; Adda, Christopher G.; Ve, Thomas; Kobe, Bostjan; Abbey, Brian

2016-01-01

The recent development of X-ray free electron lasers (XFELs) has spurred the development of serial femtosecond nanocrystallography (SFX) which, for the first time, is enabling structure retrieval from sub-micron protein crystals. Although there are already a growing number of structures published using SFX, the technology is still very new and presents a number of unique challenges as well as opportunities for structural biologists. One of the biggest barriers to the success of SFX experiments is the preparation and selection of suitable protein crystal samples. Here we outline a protocol for preparing and screening for suitable XFEL targets. PMID:27139248

AxiSEM3D: a new fast method for global wave propagation in 3-D Earth models with undulating discontinuities

NASA Astrophysics Data System (ADS)

Leng, K.; Nissen-Meyer, T.; van Driel, M.; Al-Attar, D.

2016-12-01

We present a new, computationally efficient numerical method to simulate global seismic wave propagation in realistic 3-D Earth models with laterally heterogeneous media and finite boundary perturbations. Our method is a hybrid of pseudo-spectral and spectral element methods (SEM). We characterize the azimuthal dependence of 3-D wavefields in terms of Fourier series, such that the 3-D equations of motion reduce to an algebraic system of coupled 2-D meridional equations, which can be solved by a 2-D spectral element method (based on www.axisem.info). Computational efficiency of our method stems from lateral smoothness of global Earth models (with respect to wavelength) as well as axial singularity of seismic point sources, which jointly confine the Fourier modes of wavefields to a few lower orders. All boundary perturbations that violate geometric spherical symmetry, including Earth's ellipticity, topography and bathymetry, undulations of internal discontinuities such as Moho and CMB, are uniformly considered by means of a Particle Relabeling Transformation.The MPI-based high performance C++ code AxiSEM3D, is now available for forward simulations upon 3-D Earth models with fluid outer core, ellipticity, and both mantle and crustal structures. We show novel benchmarks for global wave solutions in 3-D mantle structures between our method and an independent, fully discretized 3-D SEM with remarkable agreement. Performance comparisons are carried out on three state-of-the-art tomography models, with seismic period going down to 5s. It is shown that our method runs up to two orders of magnitude faster than the 3-D SEM for such settings, and such computational advantage scales favourably with seismic frequency. By examining wavefields passing through hypothetical Gaussian plumes of varying sharpness, we identify in model-wavelength space the limits where our method may lose its advantage.

Fast Beam-Based BPM Calibration

DOE Office of Scientific and Technical Information (OSTI.GOV)

Bertsche, K.; Loos, H.; Nuhn, H.-D.

2012-10-15

The Alignment Diagnostic System (ADS) of the LCLS undulator system indicates that the 33 undulator quadrupoles have extremely high position stability over many weeks. However, beam trajectory straightness and lasing efficiency degrade more quickly than this. A lengthy Beam Based Alignment (BBA) procedure must be executed every two to four weeks to re-optimize the X-ray beam parameters. The undulator system includes RF cavity Beam Position Monitors (RFBPMs), several of which are utilized by an automatic feedback system to align the incoming electron-beam trajectory to the undulator axis. The beam trajectory straightness degradation has been traced to electronic drifts of themore » gain and offset of the BPMs used in the beam feedback system. To quickly recover the trajectory straightness, we have developed a fast beam-based procedure to recalibrate the BPMs. This procedure takes advantage of the high-precision monitoring capability of the ADS, which allows highly repeatable positioning of undulator quadrupoles. This report describes the ADS, the position stability of the LCLS undulator quadrupoles, and some results of the new recovery procedure.« less

Sideband instability analysis based on a one-dimensional high-gain free electron laser model

NASA Astrophysics Data System (ADS)

Tsai, Cheng-Ying; Wu, Juhao; Yang, Chuan; Yoon, Moohyun; Zhou, Guanqun

2017-12-01

When an untapered high-gain free electron laser (FEL) reaches saturation, the exponential growth ceases and the radiation power starts to oscillate about an equilibrium. The FEL radiation power or efficiency can be increased by undulator tapering. For a high-gain tapered FEL, although the power is enhanced after the first saturation, it is known that there is a so-called second saturation where the FEL power growth stops even with a tapered undulator system. The sideband instability is one of the primary reasons leading to this second saturation. In this paper, we provide a quantitative analysis on how the gradient of undulator tapering can mitigate the sideband growth. The study is carried out semianalytically and compared with one-dimensional numerical simulations. The physical parameters are taken from Linac Coherent Light Source-like electron bunch and undulator systems. The sideband field gain and the evolution of the radiation spectra for different gradients of undulator tapering are examined. It is found that a strong undulator tapering (˜10 %) provides effective suppression of the sideband instability in the postsaturation regime.

Atomic structure of granulin determined from native nanocrystalline granulovirus using an X-ray free-electron laser

PubMed Central

Gati, Cornelius; Oberthuer, Dominik; Yefanov, Oleksandr; Stellato, Francesco; Chiu, Elaine; Yeh, Shin-Mei; Aquila, Andrew; Basu, Shibom; Bean, Richard; Beyerlein, Kenneth R.; Botha, Sabine; Boutet, Sébastien; DePonte, Daniel P.; Doak, R. Bruce; Fromme, Raimund; Galli, Lorenzo; Grotjohann, Ingo; James, Daniel R.; Kupitz, Christopher; Lomb, Lukas; Messerschmidt, Marc; Nass, Karol; Rendek, Kimberly; Shoeman, Robert L.; Wang, Dingjie; Weierstall, Uwe; White, Thomas A.; Williams, Garth J.; Zatsepin, Nadia A.; Fromme, Petra; Spence, John C. H.; Goldie, Kenneth N.; Jehle, Johannes A.; Metcalf, Peter; Barty, Anton

2017-01-01

To understand how molecules function in biological systems, new methods are required to obtain atomic resolution structures from biological material under physiological conditions. Intense femtosecond-duration pulses from X-ray free-electron lasers (XFELs) can outrun most damage processes, vastly increasing the tolerable dose before the specimen is destroyed. This in turn allows structure determination from crystals much smaller and more radiation sensitive than previously considered possible, allowing data collection from room temperature structures and avoiding structural changes due to cooling. Regardless, high-resolution structures obtained from XFEL data mostly use crystals far larger than 1 μm3 in volume, whereas the X-ray beam is often attenuated to protect the detector from damage caused by intense Bragg spots. Here, we describe the 2 Å resolution structure of native nanocrystalline granulovirus occlusion bodies (OBs) that are less than 0.016 μm3 in volume using the full power of the Linac Coherent Light Source (LCLS) and a dose up to 1.3 GGy per crystal. The crystalline shell of granulovirus OBs consists, on average, of about 9,000 unit cells, representing the smallest protein crystals to yield a high-resolution structure by X-ray crystallography to date. The XFEL structure shows little to no evidence of radiation damage and is more complete than a model determined using synchrotron data from recombinantly produced, much larger, cryocooled granulovirus granulin microcrystals. Our measurements suggest that it should be possible, under ideal experimental conditions, to obtain data from protein crystals with only 100 unit cells in volume using currently available XFELs and suggest that single-molecule imaging of individual biomolecules could almost be within reach. PMID:28202732

Atomic structure of granulin determined from native nanocrystalline granulovirus using an X-ray free-electron laser

DOE PAGES

Gati, Cornelius; Oberthuer, Dominik; Yefanov, Oleksandr; ...

2017-02-15

To understand how molecules function in biological systems, new methods are required to obtain atomic resolution structures from biological material under physiological conditions. Intense femtosecond-duration pulses from X-ray free-electron lasers (XFELs) can outrun most damage processes, vastly increasing the tolerable dose before the specimen is destroyed. This in turn allows structure determination from crystals much smaller and more radiation sensitive than previously considered possible, allowing data collection from room temperature structures and avoiding structural changes due to cooling. Regardless, high-resolution structures obtained from XFEL data mostly use crystals far larger than 1 μm3 in volume, whereas the X-ray beam ismore » often attenuated to protect the detector from damage caused by intense Bragg spots. Here, we describe the 2 Å resolution structure of native nanocrystalline granulovirus occlusion bodies (OBs) that are less than 0.016 μm3 in volume using the full power of the Linac Coherent Light Source (LCLS) and a dose up to 1.3 GGy per crystal. The crystalline shell of granulovirus OBs consists, on average, of about 9,000 unit cells, representing the smallest protein crystals to yield a high-resolution structure by X-ray crystallography to date. The XFEL structure shows little to no evidence of radiation damage and is more complete than a model determined using synchrotron data from recombinantly produced, much larger, cryocooled granulovirus granulin microcrystals. Furthermore, our measurements suggest that it should be possible, under ideal experimental conditions, to obtain data from protein crystals with only 100 unit cells in volume using currently available XFELs and suggest that single-molecule imaging of individual biomolecules could almost be within reach.« less

DOE Office of Scientific and Technical Information (OSTI.GOV)

Gati, Cornelius; Oberthuer, Dominik; Yefanov, Oleksandr

To understand how molecules function in biological systems, new methods are required to obtain atomic resolution structures from biological material under physiological conditions. Intense femtosecond-duration pulses from X-ray free-electron lasers (XFELs) can outrun most damage processes, vastly increasing the tolerable dose before the specimen is destroyed. This in turn allows structure determination from crystals much smaller and more radiation sensitive than previously considered possible, allowing data collection from room temperature structures and avoiding structural changes due to cooling. Regardless, high-resolution structures obtained from XFEL data mostly use crystals far larger than 1 μm3 in volume, whereas the X-ray beam ismore » often attenuated to protect the detector from damage caused by intense Bragg spots. Here, we describe the 2 Å resolution structure of native nanocrystalline granulovirus occlusion bodies (OBs) that are less than 0.016 μm3 in volume using the full power of the Linac Coherent Light Source (LCLS) and a dose up to 1.3 GGy per crystal. The crystalline shell of granulovirus OBs consists, on average, of about 9,000 unit cells, representing the smallest protein crystals to yield a high-resolution structure by X-ray crystallography to date. The XFEL structure shows little to no evidence of radiation damage and is more complete than a model determined using synchrotron data from recombinantly produced, much larger, cryocooled granulovirus granulin microcrystals. Furthermore, our measurements suggest that it should be possible, under ideal experimental conditions, to obtain data from protein crystals with only 100 unit cells in volume using currently available XFELs and suggest that single-molecule imaging of individual biomolecules could almost be within reach.« less

A comprehensive simulation framework for imaging single particles and biomolecules at the European X-ray Free-Electron Laser

DOE Office of Scientific and Technical Information (OSTI.GOV)

Yoon, Chun Hong; Yurkov, Mikhail V.; Schneidmiller, Evgeny A.

The advent of newer, brighter, and more coherent X-ray sources, such as X-ray Free-Electron Lasers (XFELs), represents a tremendous growth in the potential to apply coherent X-rays to determine the structure of materials from the micron-scale down to the Angstrom-scale. There is a significant need for a multi-physics simulation framework to perform source-to-detector simulations for a single particle imaging experiment, including (i) the multidimensional simulation of the X-ray source; (ii) simulation of the wave-optics propagation of the coherent XFEL beams; (iii) atomistic modelling of photon-material interactions; (iv) simulation of the time-dependent diffraction process, including incoherent scattering; (v) assembling noisy andmore » incomplete diffraction intensities into a three-dimensional data set using the Expansion-Maximisation-Compression (EMC) algorithm and (vi) phase retrieval to obtain structural information. Furthermore, we demonstrate the framework by simulating a single-particle experiment for a nitrogenase iron protein using parameters of the SPB/SFX instrument of the European XFEL. This exercise demonstrably yields interpretable consequences for structure determination that are crucial yet currently unavailable for experiment design.« less

A comprehensive simulation framework for imaging single particles and biomolecules at the European X-ray Free-Electron Laser

DOE PAGES

Yoon, Chun Hong; Yurkov, Mikhail V.; Schneidmiller, Evgeny A.; ...

2016-04-25

The advent of newer, brighter, and more coherent X-ray sources, such as X-ray Free-Electron Lasers (XFELs), represents a tremendous growth in the potential to apply coherent X-rays to determine the structure of materials from the micron-scale down to the Angstrom-scale. There is a significant need for a multi-physics simulation framework to perform source-to-detector simulations for a single particle imaging experiment, including (i) the multidimensional simulation of the X-ray source; (ii) simulation of the wave-optics propagation of the coherent XFEL beams; (iii) atomistic modelling of photon-material interactions; (iv) simulation of the time-dependent diffraction process, including incoherent scattering; (v) assembling noisy andmore » incomplete diffraction intensities into a three-dimensional data set using the Expansion-Maximisation-Compression (EMC) algorithm and (vi) phase retrieval to obtain structural information. Furthermore, we demonstrate the framework by simulating a single-particle experiment for a nitrogenase iron protein using parameters of the SPB/SFX instrument of the European XFEL. This exercise demonstrably yields interpretable consequences for structure determination that are crucial yet currently unavailable for experiment design.« less

7 Å Resolution in Protein 2-Dimentional-Crystal X-Ray Diffraction at Linac Coherent Light Source

DOE Office of Scientific and Technical Information (OSTI.GOV)

Pedrini, Bill; Tsai, Ching-Ju; Capitani, Guido

2014-06-09

Membrane proteins arranged as two-dimensional (2D) crystals in the lipid en- vironment provide close-to-physiological structural information, which is essential for understanding the molecular mechanisms of protein function. X-ray diffraction from individual 2D crystals did not represent a suitable investigation tool because of radiation damage. The recent availability of ultrashort pulses from X-ray Free Electron Lasers (X-FELs) has now provided a mean to outrun the damage. Here we report on measurements performed at the LCLS X-FEL on bacteriorhodopsin 2D crystals mounted on a solid support and kept at room temperature. By merg- ing data from about a dozen of single crystalmore » diffraction images, we unambiguously identified the diffraction peaks to a resolution of 7 °A, thus improving the observable resolution with respect to that achievable from a single pattern alone. This indicates that a larger dataset will allow for reliable quantification of peak intensities, and in turn a corresponding increase of resolution. The presented results pave the way to further X-FEL studies on 2D crystals, which may include pump-probe experiments at subpicosecond time resolution.« less

Fluence thresholds for grazing incidence hard x-ray mirrors

DOE Office of Scientific and Technical Information (OSTI.GOV)

Aquila, A.; Ozkan, C.; Sinn, H.

2015-06-15

X-ray Free Electron Lasers (XFELs) have the potential to contribute to many fields of science and to enable many new avenues of research, in large part due to their orders of magnitude higher peak brilliance than existing and future synchrotrons. To best exploit this peak brilliance, these XFEL beams need to be focused to appropriate spot sizes. However, the survivability of X-ray optical components in these intense, femtosecond radiation conditions is not guaranteed. As mirror optics are routinely used at XFEL facilities, a physical understanding of the interaction between intense X-ray pulses and grazing incidence X-ray optics is desirable. Wemore » conducted single shot damage threshold fluence measurements on grazing incidence X-ray optics, with coatings of ruthenium and boron carbide, at the SPring-8 Angstrom compact free electron laser facility using 7 and 12 keV photon energies. The damage threshold dose limits were found to be orders of magnitude higher than would naively be expected. The incorporation of energy transport and dissipation via keV level energetic photoelectrons accounts for the observed damage threshold.« less

Stimulated resonant x-ray Raman scattering with incoherent radiation

NASA Astrophysics Data System (ADS)

Weninger, Clemens; Rohringer, Nina

2013-11-01

We present a theoretical study on stimulated electronic Raman scattering in neon by resonant excitation with an x-ray free electron laser (XFEL). This study is in support of the recent experimental demonstration [C. Weninger , Phys. Rev. Lett. (to be published)] of stimulated x-ray Raman scattering. Focusing the broadband XFEL pulses into a cell of neon gas at atmospheric pressure a strong inelastic x-ray scattering signal in the forward direction was observed, as the x-ray energy was varied across the region of core-excited Rydberg states and the K edge. The broadband and intrinsically incoherent x-ray pulses from the XFEL lead to a rich, structured line shape of the scattered radiation. We present a generalized Maxwell-Liouville-von Neumann approach to self-consistently solve for the amplification of the scattered radiation along with the time evolution of the density matrix of the atomic and residual ionic system. An in-depth analysis of the evolution of the emission spectra as a function of the Raman gain is presented. Furthermore, we propose the use of statistical methods to obtain high-resolution scattering data beyond the lifetime broadening despite pumping with incoherent x-ray pulses.

Kinetic Modeling of Ultraintense X-Ray Laser-Matter Interactions

NASA Astrophysics Data System (ADS)

Royle, Ryan; Sentoku, Yasuhiko; Mancini, Roberto; Johzaki, Tomoyuki

2015-11-01

High-intensity XFELs have become a novel way of creating and studying hot dense plasmas. The LCLS at Stanford can deliver a millijoule of energy with more than 1012 photons in a ~ 100 femtosecond pulse. By tightly focusing the beam to a micron-scale spot size, the XFEL can be intensified to more than 1018 W/cm2, making it possible to heat solid matter isochorically beyond a million degrees (>100 eV). Such extreme states of matter are of considerable interest due to their relevance to astrophysical plasmas. Additionally, they will allow novel ways of studying equation-of-state and opacity physics under Gbar pressure and strong fields. Photoionization is the dominant x-ray absorption mechanism and triggers the heating processes. A photoionization model that takes into account the subshell cross-sections has been developed in a kinetic plasma simulation code, PICLS, that solves the x-ray transport self-consistently. The XFEL-matter interaction with several elements, including solid carbon, aluminum, and iron, is studied with the code, and the results are compared with recent LCLS experiments. This work was supported by the DOE/OFES under Contract No. DE-SC0008827.

7 Å resolution in protein two-dimensional-crystal X-ray diffraction at Linac Coherent Light Source

PubMed Central

Pedrini, Bill; Tsai, Ching-Ju; Capitani, Guido; Padeste, Celestino; Hunter, Mark S.; Zatsepin, Nadia A.; Barty, Anton; Benner, W. Henry; Boutet, Sébastien; Feld, Geoffrey K.; Hau-Riege, Stefan P.; Kirian, Richard A.; Kupitz, Christopher; Messerschmitt, Marc; Ogren, John I.; Pardini, Tommaso; Segelke, Brent; Williams, Garth J.; Spence, John C. H.; Abela, Rafael; Coleman, Matthew; Evans, James E.; Schertler, Gebhard F. X.; Frank, Matthias; Li, Xiao-Dan

2014-01-01

Membrane proteins arranged as two-dimensional crystals in the lipid environment provide close-to-physiological structural information, which is essential for understanding the molecular mechanisms of protein function. Previously, X-ray diffraction from individual two-dimensional crystals did not represent a suitable investigational tool because of radiation damage. The recent availability of ultrashort pulses from X-ray free-electron lasers (XFELs) has now provided a means to outrun the damage. Here, we report on measurements performed at the Linac Coherent Light Source XFEL on bacteriorhodopsin two-dimensional crystals mounted on a solid support and kept at room temperature. By merging data from about a dozen single crystal diffraction images, we unambiguously identified the diffraction peaks to a resolution of 7 Å, thus improving the observable resolution with respect to that achievable from a single pattern alone. This indicates that a larger dataset will allow for reliable quantification of peak intensities, and in turn a corresponding increase in the resolution. The presented results pave the way for further XFEL studies on two-dimensional crystals, which may include pump–probe experiments at subpicosecond time resolution. PMID:24914166

DOE Office of Scientific and Technical Information (OSTI.GOV)

Lu, W., E-mail: wei.lu@xfel.eu; European X-Ray Free-Electron Laser Facility, 22607 Hamburg; Noll, T.

A hard X-ray Split and Delay Line (SDL) under development for the Materials Imaging and Dynamics (MID) station at the European X-Ray Free-Electron Laser (XFEL.EU) is presented. This device will provide pairs of X-ray pulses with a variable time delay ranging from −10 ps to 800 ps in a photon energy range from 5 to 10 keV. Throughput simulations in the SASE case indicate a total transmission of 1.1% or 3.5% depending on the operation mode. In the self-seeded case of XFEL.EU operation simulations indicate that the transmission can be improved to more than 11%.

Mechanical design of thin-film diamond crystal mounting apparatus for coherence preservation hard x-ray optics

DOE Office of Scientific and Technical Information (OSTI.GOV)

Shu, Deming, E-mail: shu@aps.anl.gov; Shvyd’ko, Yuri V.; Stoupin, Stanislav

2016-07-27

A new thin-film diamond crystal mounting apparatus has been designed at the Advanced Photon Source (APS) for coherence preservation hard x-ray optics with optimized thermal contact and minimized crystal strain. This novel mechanical design can be applied to new development in the field of: x-ray optics cavities for hard x-ray free-electron laser oscillators (XFELOs), self-seeding monochromators for hard x-ray free-electron laser (XFEL) with high average thermal loading, high heat load diamond crystal monochromators and beam-sharing/beam-split-and-delay devices for XFEL facilities and future upgraded high-brightness coherent x-ray source in the MBA lattice configuration at the APS.

Species sensitivity distribution approach to primary risk analysis of the metal pyrithione photodegradation product, 2,2'-dipyridyldisulfide in the Inland Sea and induction of notochord undulation in fish embryos.

PubMed

Mochida, Kazuhiko; Amano, Haruna; Ito, Katsutoshi; Ito, Mana; Onduka, Toshimitsu; Ichihashi, Hideki; Kakuno, Akira; Harino, Hiroya; Fujii, Kazunori

2012-08-15

To carry out a primary risk assessment in the Inland Sea of Japan for 2,2'-dipyridyldisulfide [(PS)(2)], a metal pyrithione photodegradation product, we used a methodology based on the species sensitivity distribution (SSD) estimated with a Bayesian statistical model. We first conducted growth inhibition tests with three marine phytoplankton species, Tetraselmis tetrathele, Chaetoceros calcitrans, and Dunaliella tertiolecta. We also performed acute and early life stage toxicity (ELS) tests with a teleost fish, the mummichog (Fundulus heteroclitus). The algal growth inhibition tests revealed that the 72-h EC(50) ranged from 62 to 1100 μg/L. Acute toxicity tests with larval mummichogs revealed that the 96-h LC(50) was approximately 500 μg/L based on the actual toxicant concentrations. ELS testing of (PS)(2) under continuous flow-through conditions for 50 days revealed that growth was the most sensitive endpoint, and both total length and body weight were significantly lower in the groups exposed to 27 μg/L (PS)(2) compared to the solvent control group. We determined a lowest observed effect concentration of 17 μg/L and a NOEC of 5.9 μg/L based on the actual toxicant concentrations. By using the ecotoxicity data (LC(50) and EC(50)) from this study and previous work, we calculated a hazardous concentration that should protect 95% and 99% of species (HC(5) and HC(1)) based on the SSD derived with a Bayesian statistical model. The medians with 90% confidence intervals (parentheses) of the HC(5) and HC(1) were 31.0 (3.2, 101.8) μg/L and 10.1 (0.5, 44.2) μg/L, respectively. In the ELS test, about 80% of hatched larvae exposed to 243-μg/L (PS)(2) displayed a notochord undulation. To elucidate the cause of the notochord undulation, we carried out embryo toxicity tests by exposing embryos at various developmental stages to (PS)(2). Exposure to (PS)(2) through the entire gastrulae stage was important to induction of the morphological abnormality. Lysyl oxidase activity

A noncoherent model for microwave emissions and backscattering from the sea surface

NASA Technical Reports Server (NTRS)

Wu, S. T.; Fung, A. K.

1973-01-01

The two-scale (small irregularities superimposed upon large undulations) scattering theory proposed by Semyonov was extended and used to compute microwave apparent temperature and the backscattering cross section from ocean surfaces. The effect of the small irregularities upon the scattering characteristics of the large undulations is included by modifying the Fresnel reflection coefficients; whereas the effect of the large undulations upon those of the small irregularities is taken into account by averaging over the surface normals of the large undulations. The same set of surface parameters is employed for a given wind speed to predict both the scattering and the emission characteristics at both polarizations.

Periodization Strategies in Older Adults: Impact on Physical Function and Health.

PubMed

Conlon, Jenny A; Newton, Robert U; Tufano, James J; Banyard, Harry G; Hopper, Amanda J; Ridge, Ashley J; Haff, G Gregory

2016-12-01

This study compared the effect of periodized versus nonperiodized (NP) resistance training (RT) on physical function and health outcomes in older adults. Forty-one apparently healthy untrained older adults (women = 21, men = 20; 70.9 ± 5.1 yr; 166.3 ± 8.2 cm; 72.9 ± 13.4 kg) were recruited and randomly stratified to a NP, block periodized, or daily undulating periodized training group. Outcome measures were assessed at baseline and after a 22-wk × 3 d·wk RT intervention, including; anthropometrics, body composition, blood pressure and biomarkers, maximal strength, functional capacity, balance confidence, and quality of life. Thirty-three subjects satisfied all study requirements and were included in analyses (women = 17, men = 16; 71.3 ± 5.4 yr; 166.3 ± 8.5 cm; 72.5 ± 13.7 kg). The main finding was that all three RT models produced significant improvements in several physical function and physiological health outcomes, including; systolic blood pressure, blood biomarkers, body composition, maximal strength, functional capacity and balance confidence, with no between-group differences. Periodized RT, specifically block periodization and daily undulating periodized, and NP RT are equally effective for promoting significant improvements in physical function and health outcomes among apparently healthy untrained older adults. Therefore, periodization strategies do not appear to be necessary during the initial stages of RT in this population. Practitioners should work toward increasing RT participation in the age via feasible and efficacious interventions targeting long-term adherence in minimally supervised settings.

X-ray spectrometer based on a bent diamond crystal for high repetition rate free-electron laser applications

DOE PAGES

Boesenberg, Ulrike; Samoylova, Liubov; Roth, Thomas; ...

2017-02-03

A precise spectral characterization of every single pulse is required in many x-ray free-electron laser (XFEL) experiments due to the fluctuating spectral content of self-amplified spontaneous emission (SASE) beams. Bent single-crystal spectrometers can provide sufficient spectral resolution to resolve the SASE spikes while also covering the full SASE bandwidth. To better withstand the high heat load induced by the 4.5 MHz repetition rate of pulses at the forthcoming European XFEL facility, a spectrometer based on single-crystal diamond has been developed. Here, we report a direct comparison of the diamond spectrometer with its Si counterpart in experiments performed at the Linacmore » Coherent Light Source.« less

DOE Office of Scientific and Technical Information (OSTI.GOV)

TREMAINE,A.; MUROKH,A.; WANG,X.J.

The VISA experiment is designed to reach and study saturation in a high gain 800nm SASE FEL at the Brookhaven Accelerator Test Facility (ATF). To do this, the undulator must be aligned at first to within 20 {micro}m with use of a laser interferometric system. Once aligned, any small movements from the aligned position will greatly detriment the SASE FEL performance thus making continuous monitoring of the undulator position necessary. This is quite a complicated task since the 4m undulator is made up of four 1m sections enclosed in a vacuum chamber. We have developed an in situ optical systemmore » to monitor the undulator position with an accuracy better than 10 {micro}m. In addition, we have demonstrated the accuracy of this system by bringing the grossly misaligned VISA undulator ({approximately} 500 {micro}m in some locations) into alignment and attaining very high gain of the SASE FEL.« less

DOE Office of Scientific and Technical Information (OSTI.GOV)

NONE

As part of the R and D program towards a fourth generation light source, a Self-Amplified Spontaneous Emission (SASE) demonstration is being prepared. The Visible-Infrared SASE Amplifier (VISA) undulator will be installed at Brookhaven National Laboratory by the end of the year. The VISA undulator is an in-vacuum, 4-meter long, 1.8 cm period, pure-permanent magnet device, with a novel, strong focusing, permanent magnet FODO array included within the fixed, 6 mm undulator gap. The undulator is constructed of 99 cm long segments. To attain maximum SASE gain requires establishing overlap of electron and photon beams to within 50 {micro}m rms.more » This imposes challenging tolerances on mechanical fabrication and magnetic field quality, and necessitates use of laser straightness interferometry for calibration and alignment of the magnetic axes of the undulator segments. This paper describes the magnetic centerline determination, and the fiducialization and alignment processes which were performed to meet the tolerance goal.« less

DOE Office of Scientific and Technical Information (OSTI.GOV)

Ruland, Robert E.

As part of the R and D program towards a fourth generation light source, a Self-Amplified Spontaneous Emission (SASE) demonstration is being prepared. The Visible-Infrared SASE Amplifier (VISA) undulator is being installed at Brookhaven National Laboratory. The VISA undulator is an in-vacuum, 4-meter long, 1.8 cm period, pure-permanent magnet device, with a novel, strong focusing, permanent magnet FODO array included within the fixed, 6 mm undulator gap. The undulator is constructed of 99 cm long segments. To attain maximum SASE gain requires establishing overlap of electron and photon beams to within 50 pm rms. This imposes challenging tolerances on mechanicalmore » fabrication and magnetic field quality, and necessitates use of laser straightness interferometry for calibration and alignment of the magnetic axes of the undulator segments. This paper describes the magnetic centerline determination, and the fiducialization and alignment processes, which were performed to meet the tolerance goal.« less

DOE Office of Scientific and Technical Information (OSTI.GOV)

MUROKH,A.; FRIGOLA,P.; ET AL

We describe a diagnostics system developed, to measure exponential gain properties and the electron beam dynamics inside the strong focusing 4-m long undulator for the VISA (Visible to Infrared SASE Amplifier) FEL. The technical challenges included working inside the small undulator gap, optimizing the electron beam diagnostics in the high background environment of the spontaneous undulator radiation, multiplexing and transporting the photon beam. Initial results are discussed.

Improvements in serial femtosecond crystallography of photosystem II by optimizing crystal uniformity using microseeding procedures

DOE PAGES

Ibrahim, Mohamed; Chatterjee, Ruchira; Hellmich, Julia; ...

2015-07-01

In photosynthesis, photosystem II (PSII) is the multi-subunit membrane protein complex that catalyzes photo-oxidation of water into dioxygen through the oxygen evolving complex (OEC). To understand the water oxidation reaction, it is important to get structural information about the transient and intermediate states of the OEC in the dimeric PSII core complex (dPSIIcc). In recent times, femtosecond X-ray pulses from the free electron laser (XFEL) are being used to obtain X-ray diffraction (XRD) data of dPSIIcc microcrystals at room temperature that are free of radiation damage. In our experiments at the XFEL, we used an electrospun liquid microjet setup thatmore » requires microcrystals less than 40 μm in size. In this study, we explored various microseeding techniques to get a high yield of monodisperse uniform-sized microcrystals. Monodisperse microcrystals of dPSIIcc of uniform size were a key to improve the stability of the jet and the quality of XRD data obtained at the XFEL. This was evident by an improvement of the quality of the datasets obtained, from 6.5 Å, using crystals grown without the micro seeding approach, to 4.5 Å using crystals generated with the new method.« less

Exploring vacuum birefringence based on a 100 PW laser and an x-ray free electron laser beam

NASA Astrophysics Data System (ADS)

Shen, Baifei; Bu, Zhigang; Xu, Jiancai; Xu, Tongjun; Ji, Liangliang; Li, Ruxin; Xu, Zhizhan

2018-04-01

Exploring vacuum birefringence with the station of extreme light at Shanghai Coherent Light Facility is considered. Laser pulses of intensity beyond 1023 W cm-2 are capable of polarizing the vacuum due to the ultra-strong electro-magnetic fields. The subtle difference of the vacuum refractive indexes along electric and magnetic fields leads to a birefringence effect for lights propagating through. The vacuum birefringence effect can now be captured by colliding a hard x-ray free electron laser (XFEL) beam with a high-power laser. The initial XFEL beam of pure linear polarization is predicated to gain a very small ellipticity after passing through the laser stimulated vacuum. Various interaction geometries are considered, showing that the estimated ellipticity lies between 1.8 × 10-10 and 10-9 for a 100 PW laser interacting with a 12.9 keV XFEL beam, approaching the threshold for todays’ polarity detection technique. The detailed experimental set-up is designed, including the polarimeter, the focusing compound refractive lens and the optical path. When taking into account the efficiencies of the x-ray instruments, it is found that about 10 polarization-flipped x-ray photons can be detected for a single shot for our design. Considering the background noise level, accumulating runs are necessary to obtain high confident measurement.

Asymmetry in serial femtosecond crystallography data.

PubMed

Sharma, Amit; Johansson, Linda; Dunevall, Elin; Wahlgren, Weixiao Y; Neutze, Richard; Katona, Gergely

2017-03-01

Serial crystallography is an increasingly important approach to protein crystallography that exploits both X-ray free-electron laser (XFEL) and synchrotron radiation. Serial crystallography recovers complete X-ray diffraction data by processing and merging diffraction images from thousands of randomly oriented non-uniform microcrystals, of which all observations are partial Bragg reflections. Random fluctuations in the XFEL pulse energy spectrum, variations in the size and shape of microcrystals, integrating over millions of weak partial observations and instabilities in the XFEL beam position lead to new types of experimental errors. The quality of Bragg intensity estimates deriving from serial crystallography is therefore contingent upon assumptions made while modeling these data. Here it is observed that serial femtosecond crystallography (SFX) Bragg reflections do not follow a unimodal Gaussian distribution and it is recommended that an idealized assumption of single Gaussian peak profiles be relaxed to incorporate apparent asymmetries when processing SFX data. The phenomenon is illustrated by re-analyzing data collected from microcrystals of the Blastochloris viridis photosynthetic reaction center and comparing these intensity observations with conventional synchrotron data. The results show that skewness in the SFX observations captures the essence of the Wilson plot and an empirical treatment is suggested that can help to separate the diffraction Bragg intensity from the background.

Swimming dynamics of the lyme disease spirochete.

PubMed

Vig, Dhruv K; Wolgemuth, Charles W

2012-11-21

The Lyme disease spirochete, Borrelia burgdorferi, swims by undulating its cell body in the form of a traveling flat wave, a process driven by rotating internal flagella. We study B. burgdorferi's swimming by treating the cell body and flagella as linearly elastic filaments. The dynamics of the cell are then determined from the balance between elastic and resistive forces and moments. We find that planar, traveling waves only exist when the flagella are effectively anchored at both ends of the bacterium and that these traveling flat waves rotate as they undulate. The model predicts how the undulation frequency is related to the torque from the flagellar motors and how the stiffness of the cell body and flagella affect the undulations and morphology.

Swimming Dynamics of the Lyme Disease Spirochete

NASA Astrophysics Data System (ADS)

Vig, Dhruv K.; Wolgemuth, Charles W.

2012-11-01

The Lyme disease spirochete, Borrelia burgdorferi, swims by undulating its cell body in the form of a traveling flat wave, a process driven by rotating internal flagella. We study B. burgdorferi’s swimming by treating the cell body and flagella as linearly elastic filaments. The dynamics of the cell are then determined from the balance between elastic and resistive forces and moments. We find that planar, traveling waves only exist when the flagella are effectively anchored at both ends of the bacterium and that these traveling flat waves rotate as they undulate. The model predicts how the undulation frequency is related to the torque from the flagellar motors and how the stiffness of the cell body and flagella affect the undulations and morphology.

Sideband instability analysis based on a one-dimensional high-gain free electron laser model

DOE PAGES

Tsai, Cheng-Ying; Wu, Juhao; Yang, Chuan; ...

2017-12-18

When an untapered high-gain free electron laser (FEL) reaches saturation, the exponential growth ceases and the radiation power starts to oscillate about an equilibrium. The FEL radiation power or efficiency can be increased by undulator tapering. For a high-gain tapered FEL, although the power is enhanced after the first saturation, it is known that there is a so-called second saturation where the FEL power growth stops even with a tapered undulator system. The sideband instability is one of the primary reasons leading to this second saturation. In this paper, we provide a quantitative analysis on how the gradient of undulatormore » tapering can mitigate the sideband growth. The study is carried out semianalytically and compared with one-dimensional numerical simulations. The physical parameters are taken from Linac Coherent Light Source-like electron bunch and undulator systems. The sideband field gain and the evolution of the radiation spectra for different gradients of undulator tapering are examined. It is found that a strong undulator tapering (~10 % ) provides effective suppression of the sideband instability in the postsaturation regime.« less

Sideband instability analysis based on a one-dimensional high-gain free electron laser model

DOE Office of Scientific and Technical Information (OSTI.GOV)

Tsai, Cheng-Ying; Wu, Juhao; Yang, Chuan

When an untapered high-gain free electron laser (FEL) reaches saturation, the exponential growth ceases and the radiation power starts to oscillate about an equilibrium. The FEL radiation power or efficiency can be increased by undulator tapering. For a high-gain tapered FEL, although the power is enhanced after the first saturation, it is known that there is a so-called second saturation where the FEL power growth stops even with a tapered undulator system. The sideband instability is one of the primary reasons leading to this second saturation. In this paper, we provide a quantitative analysis on how the gradient of undulatormore » tapering can mitigate the sideband growth. The study is carried out semianalytically and compared with one-dimensional numerical simulations. The physical parameters are taken from Linac Coherent Light Source-like electron bunch and undulator systems. The sideband field gain and the evolution of the radiation spectra for different gradients of undulator tapering are examined. It is found that a strong undulator tapering (~10 % ) provides effective suppression of the sideband instability in the postsaturation regime.« less

Diagnostics Upgrades for Investigations of HOM Effects in TESLA-type SCRF Cavities

DOE Office of Scientific and Technical Information (OSTI.GOV)

Lumpkin, A. H.; Edstrom Jr., D.; Ruan, J.

We describe the upgrades to diagnostic capabilities on the Fermilab Accelerator Science and Technology (FAST) electron linear accelerator that will allow investigations of the effects of high-order modes (HOMs) in SCRF cavities on macropulse-average beam quality. We examine the dipole modes in the first pass-band generally observed in the 1.6-1.9 GHz regime for TESLA-type SCRF cavities due to uniform transverse beam offsets of the electron beam. Such cavities are the basis of the accelerators such as the European XFEL and the proposed MaRIE XFEL facility. Preliminary HOM detector data, prototype BPM test data, and first framing camera OTR data withmore » ~20- micron spatial resolution at 250 pC per bunch will be presented.« less

Towards single particle imaging of human chromosomes at SACLA

NASA Astrophysics Data System (ADS)

Robinson, Ian; Schwenke, Joerg; Yusuf, Mohammed; Estandarte, Ana; Zhang, Fucai; Chen, Bo; Clark, Jesse; Song, Changyong; Nam, Daewoong; Joti, Yasumasa; Tono, Kensuke; Yabashi, Makina; Ratnasari, Gina; Kaneyoshi, Kohei; Takata, Hideaki; Fukui, Kiichi

2015-12-01

Single particle imaging (SPI) is one of the front-page opportunities which were used to motivate the construction of the first x-ray free electron lasers (XFELs). SPI’s big advantage is that it avoids radiation damage to biological samples because the diffraction takes place in femtosecond single shots before any atomic motion can take place in the sample, hence before the onset of radiation damage. This is the ‘diffract before destruction’ theme, destruction being assured from the high x-ray doses used. This article reports our collaboration’s first attempt at SPI using the SACLA XFEL facility in June 2015. The report is limited to experience with the instrumentation and examples of data because we have not yet had time to invert them to images.

PEP as a synchrotron radiation source (invited)

NASA Astrophysics Data System (ADS)

Bienenstock, A.; Brown, G.; Wiedemann, H.; Winick, H.

1989-07-01

The 16-GeV storage ring PEP has characteristics which enable it to operate in modes with very low emittance and to accommodate very long undulators, producing synchrotron radiation at x-ray wavelengths with extremely high brightness and coherent power. Two beamlines, each illuminated by a 2-m long, 77-mm period undulator magnet, are now operational and others are planned. In parasitic operation during colliding-beam runs at 14.5 GeV, these beamlines provide photons above 10 keV with a peak brightness of about 1016 photons/(s mm2 mrad2 ) within a 0.1% bandwidth. In low-emittance tests at 7.1 GeV, horizontal emittances of about 5 nm rad were measured, which is about the same as that planned for the new third-generation x-ray sources. With a current of 15 mA at 7.1 GeV, the present undulators deliver photon beams from 2.7 to 14 keV with a peak brightness of about 1017 . Higher performance levels are expected with the implementation of longer undulators and shorter period undulators. In the longer term, because of its large circumference and long straight sections, PEP could be further developed to achieve even higher performance levels with an emittance below 1 nm rad, very long undulators and picosecond bunches, resulting in one to two orders of magnitude higher brightness and coherent power.

DOE Office of Scientific and Technical Information (OSTI.GOV)

RAKOWKSY,G.; ASPENLEITER,J.; SOLOMON,L.

The Visible-Infrared SASE Amplifier (VISA) undulator is an in-vacuum, 4-meter long, 1.8 cm period, pure-permanent magnet device, with a novel, strong focusing, permanent magnet FODO array included within the fixed, 6 mm undulator gap. The undulator magnet is constructed of 99-cm long segments, joined into a continuous structure. To attain maximum SASE gain requites establishing overlap of electron and photon beams to within 50 microns rms. This imposes challenging tolerances on mechanical fabrication and magnetic field quality, and necessitates use of laser straightness interferometry for calibration and alignment of the magnetic axes of the undulator segments. This paper describes themore » computerized magnet sorting, pulsed-wire magnetic measurements, trajectory shimming and magnetic axis calibration performed to meet this goal.« less

Low- Z polymer sample supports for fixed-target serial femtosecond X-ray crystallography

DOE Office of Scientific and Technical Information (OSTI.GOV)

Feld, Geoffrey K.; Heymann, Michael; Benner, W. Henry

X-ray free-electron lasers (XFELs) offer a new avenue to the structural probing of complex materials, including biomolecules. Delivery of precious sample to the XFEL beam is a key consideration, as the sample of interest must be serially replaced after each destructive pulse. The fixed-target approach to sample delivery involves depositing samples on a thin-film support and subsequent serial introduction via a translating stage. Some classes of biological materials, including two-dimensional protein crystals, must be introduced on fixed-target supports, as they require a flat surface to prevent sample wrinkling. A series of wafer and transmission electron microscopy (TEM)-style grid supports constructedmore » of low- Z plastic have been custom-designed and produced. Aluminium TEM grid holders were engineered, capable of delivering up to 20 different conventional or plastic TEM grids using fixed-target stages available at the Linac Coherent Light Source (LCLS). As proof-of-principle, X-ray diffraction has been demonstrated from two-dimensional crystals of bacteriorhodopsin and three-dimensional crystals of anthrax toxin protective antigen mounted on these supports at the LCLS. In conclusion, the benefits and limitations of these low- Z fixed-target supports are discussed; it is the authors' belief that they represent a viable and efficient alternative to previously reported fixed-target supports for conducting diffraction studies with XFELs.« less

Kinetic modeling of x-ray laser-driven solid Al plasmas via particle-in-cell simulation

NASA Astrophysics Data System (ADS)

Royle, R.; Sentoku, Y.; Mancini, R. C.; Paraschiv, I.; Johzaki, T.

2017-06-01

Solid-density plasmas driven by intense x-ray free-electron laser (XFEL) radiation are seeded by sources of nonthermal photoelectrons and Auger electrons that ionize and heat the target via collisions. Simulation codes that are commonly used to model such plasmas, such as collisional-radiative (CR) codes, typically assume a Maxwellian distribution and thus instantaneous thermalization of the source electrons. In this study, we present a detailed description and initial applications of a collisional particle-in-cell code, picls, that has been extended with a self-consistent radiation transport model and Monte Carlo models for photoionization and K L L Auger ionization, enabling the fully kinetic simulation of XFEL-driven plasmas. The code is used to simulate two experiments previously performed at the Linac Coherent Light Source investigating XFEL-driven solid-density Al plasmas. It is shown that picls-simulated pulse transmissions using the Ecker-Kröll continuum-lowering model agree much better with measurements than do simulations using the Stewart-Pyatt model. Good quantitative agreement is also found between the time-dependent picls results and those of analogous simulations by the CR code scfly, which was used in the analysis of the experiments to accurately reproduce the observed K α emissions and pulse transmissions. Finally, it is shown that the effects of the nonthermal electrons are negligible for the conditions of the particular experiments under investigation.

The Continuous Plankton Recorder: concepts and history, from Plankton Indicator to undulating recorders [review article

NASA Astrophysics Data System (ADS)

Reid, P. C.; Colebrook, J. M.; Matthews, J. B. L.; Aiken, J.; Continuous Plankton Recorder Team

2003-08-01

Alister Hardy conceived the Continuous Plankton Recorder (CPR) survey in the 1920s as a means of mapping near-surface plankton in space and time, interpreting the changing fortunes of the fisheries and relating plankton changes to hydrometeorology and climatic change. The seed he planted has grown to become the most extensive long-term survey of marine organisms in the world and the breadth of his vision becomes ever more apparent. The survey has now run for over 70 years and its value increases with every passing decade. Operating from ‘ships of opportunity’ the machines used are robust, reliable and easy to handle. Wherever possible, all the sampling and analytical methods have not been changed to maintain the consistency of the time series. Computerisation and the development of new statistical approaches have increased our ability to handle the large quantities of information generated and enhance the sensitivity of the data analyses. This overview, based on almost 900 papers, recounts the various phases in the history of the survey. It starts with the Indicator Survey (1921-1934), the deployment of the first CPR on the Discovery Expedition (1924-1927) and the early CPR survey in the North Sea (1931-1939). The survey reopened in 1946 after the Second World War and expanded across the North Atlantic to North America from 1959. Taxonomic studies were initiated and an emphasis was placed on patterns of distribution, which were seen to reflect the varying oceanographic conditions. The years 1968-1976 saw further expansion with operations even in the American Great Lakes, publication of a Plankton Atlas and initial evidence for a downward trend in plankton biomass. At about this time electronic instrumentation was attached to CPRs to make additional measurements and work was started on the development of a new generation of undulating Continuous Plankton and Environmental Recorders (CPERs). In 1976 the survey moved to Plymouth. Scientific priorities in the UK

Probing dynamics in colloidal crystals with pump-probe experiments at LCLS: Methodology and analysis

DOE PAGES

Mukharamova, Nastasia; Lazarev, Sergey; Meijer, Janne -Mieke; ...

2017-05-19

We present results of the studies of dynamics in colloidal crystals performed by pump-probe experiments using an X-ray free-electron laser (XFEL). Colloidal crystals were pumped with an infrared laser at a wavelength of 800 nm with varying power and probed by XFEL pulses at an energy of 8 keV with a time delay up to 1000 ps. The positions of the Bragg peaks, and their radial and azimuthal widths were analyzed as a function of the time delay. The spectral analysis of the data did not reveal significant enhancement of frequencies expected in this experiment. As a result, this allowedmore » us to conclude that the amplitude of vibrational modes excited in colloidal crystals was less than the systematic error caused by the noise level.« less

Tutorial on X-Ray Free-Electron Lasers

DOE PAGES

Carlsten, Bruce E.

2018-05-02

This article provides a tutorial on X-ray free-electron lasers (XFELs) which are currently being designed, built, commissioned, and operated as fourth-generation light sources to enable discovery science in materials science, biology, and chemistry. XFELs are complex devices, driven by high-energy, high-brightness electron accelerators and cost on the order of $B. Here, we provide a basic introduction to their operating physics and a description of their main accelerator components. To make their basic operating principle accessible to the electrical engineering community, we rederive the FEL dispersion relation in a manner similar to that done for traveling-wave tubes. We finish with sectionsmore » describing some unique features of the X-rays generated and on the physics that lead to the main design limitations, including approaches for mitigation.« less

Thermal-Mechanical Study of 3.9 GHz CW Coupler and Cavity for LCLS-II Project

DOE Office of Scientific and Technical Information (OSTI.GOV)

Gonin, Ivan; Harms, Elvin; Khabiboulline, Timergali

2017-05-01

Third harmonic system was originally developed by Fermilab for FLASH facility at DESY and then was adopted and modified by INFN for the XFEL project [1-3]. In contrast to XFEL project, all cryomodules in LCLS-II project will operate in CW regime with higher RF average power for 1.3 GHz and 3.9 GHz cavities and couplers. Design of the cavity and fundamental power coupler has been modified to satisfy LCLS-II requirements. In this paper we discuss the results of COMSOL thermal and mechanical analysis of the 3.9 GHz coupler and cavity to verify proposed modifica-tion of the design. For the dressedmore » cavity we present simulations of Lorentz force detuning, helium pressure sensitivity df/dP and major mechanical resonances.« less

Tutorial on X-Ray Free-Electron Lasers

DOE Office of Scientific and Technical Information (OSTI.GOV)

Carlsten, Bruce E.

This article provides a tutorial on X-ray free-electron lasers (XFELs) which are currently being designed, built, commissioned, and operated as fourth-generation light sources to enable discovery science in materials science, biology, and chemistry. XFELs are complex devices, driven by high-energy, high-brightness electron accelerators and cost on the order of $B. Here, we provide a basic introduction to their operating physics and a description of their main accelerator components. To make their basic operating principle accessible to the electrical engineering community, we rederive the FEL dispersion relation in a manner similar to that done for traveling-wave tubes. We finish with sectionsmore » describing some unique features of the X-rays generated and on the physics that lead to the main design limitations, including approaches for mitigation.« less

Protein structure determination by single-wavelength anomalous diffraction phasing of X-ray free-electron laser data

DOE PAGES

Nass, Karol; Meinhart, Anton; Barends, Thomas R. M.; ...

2016-03-09

Serial femtosecond crystallography (SFX) at X-ray free-electron lasers (XFELs) offers unprecedented possibilities for macromolecular structure determination of systems that are prone to radiation damage. However, phasing XFEL data de novo is complicated by the inherent inaccuracy of SFX data, and only a few successful examples, mostly based on exceedingly strong anomalous or isomorphous difference signals, have been reported. Here, it is shown that SFX data from thaumatin microcrystals can be successfully phased using only the weak anomalous scattering from the endogenous S atoms. Furthermore, a step-by-step investigation is presented of the particular problems of SAD phasing of SFX data, analysingmore » data from a derivative with a strong anomalous signal as well as the weak signal from endogenous S atoms.« less

Correlations in Scattered X-Ray Laser Pulses Reveal Nanoscale Structural Features of Viruses

NASA Astrophysics Data System (ADS)

Kurta, Ruslan P.; Donatelli, Jeffrey J.; Yoon, Chun Hong; Berntsen, Peter; Bielecki, Johan; Daurer, Benedikt J.; DeMirci, Hasan; Fromme, Petra; Hantke, Max Felix; Maia, Filipe R. N. C.; Munke, Anna; Nettelblad, Carl; Pande, Kanupriya; Reddy, Hemanth K. N.; Sellberg, Jonas A.; Sierra, Raymond G.; Svenda, Martin; van der Schot, Gijs; Vartanyants, Ivan A.; Williams, Garth J.; Xavier, P. Lourdu; Aquila, Andrew; Zwart, Peter H.; Mancuso, Adrian P.

2017-10-01

We use extremely bright and ultrashort pulses from an x-ray free-electron laser (XFEL) to measure correlations in x rays scattered from individual bioparticles. This allows us to go beyond the traditional crystallography and single-particle imaging approaches for structure investigations. We employ angular correlations to recover the three-dimensional (3D) structure of nanoscale viruses from x-ray diffraction data measured at the Linac Coherent Light Source. Correlations provide us with a comprehensive structural fingerprint of a 3D virus, which we use both for model-based and ab initio structure recovery. The analyses reveal a clear indication that the structure of the viruses deviates from the expected perfect icosahedral symmetry. Our results anticipate exciting opportunities for XFEL studies of the structure and dynamics of nanoscale objects by means of angular correlations.

DOE Office of Scientific and Technical Information (OSTI.GOV)

Mukharamova, Nastasia; Lazarev, Sergey; Meijer, Janne -Mieke

We present results of the studies of dynamics in colloidal crystals performed by pump-probe experiments using an X-ray free-electron laser (XFEL). Colloidal crystals were pumped with an infrared laser at a wavelength of 800 nm with varying power and probed by XFEL pulses at an energy of 8 keV with a time delay up to 1000 ps. The positions of the Bragg peaks, and their radial and azimuthal widths were analyzed as a function of the time delay. The spectral analysis of the data did not reveal significant enhancement of frequencies expected in this experiment. As a result, this allowedmore » us to conclude that the amplitude of vibrational modes excited in colloidal crystals was less than the systematic error caused by the noise level.« less

Beam debunching due to ISR-induced energy diffusion

DOE PAGES

Yampolsky, Nikolai A.; Carlsten, Bruce E.

2017-06-20

One of the options for increasing longitudinal coherency of X-ray free electron lasers (XFELs) is seeding with a microbunched electron beam. Several schemes leading to significant amplitude of the beam bunching at X-ray wavelengths were recently proposed. All these schemes rely on beam optics having several magnetic dipoles. While the beam passes through a dipole, its energy spread increases due to quantum effects of synchrotron radiation. As a result, the bunching factor at small wavelengths reduces since electrons having different energies follow different trajectories in the bend. We rigorously calculate the reduction in the bunching factor due to incoherent synchrotronmore » the radiation while the beam travels in an arbitrary beamline. Lastly, we apply general results to estimate reduction of harmonic current in common schemes proposed for XFEL seeding.« less

DOE Office of Scientific and Technical Information (OSTI.GOV)

Gluskin, Efim; Trakhtenberg, Emil; Xu, Joseph Z.

A method and apparatus for implementing dynamic compensation of magnetic forces for undulators are provided. An undulator includes a respective set of magnet arrays, each attached to a strongback, and placed on horizontal slides and positioned parallel relative to each other with a predetermined gap. Magnetic forces are compensated by a set of compensation springs placed along the strongback. The compensation springs are conical springs having exponential-force characteristics that substantially match undulator magnetic forces independently of the predetermined gap. The conical springs are positioned along the length of the magnets.

Light Optics for Optical Stochastic Cooling

DOE Office of Scientific and Technical Information (OSTI.GOV)

Andorf, Matthew; Lebedev, Valeri; Piot, Philippe

2016-06-01

In Optical Stochastic Cooling (OSC) radiation generated by a particle in a "pickup" undulator is amplified and transported to a downstream "kicker" undulator where it interacts with the same particle which radiated it. Fermilab plans to carry out both passive (no optical amplifier) and active (optical amplifier) tests of OSC at the Integrable Optics Test Accelerator (IOTA) currently in construction*. The performace of the optical system is analyzed with simulations in Synchrotron Radiation Workshop (SRW) accounting for the specific temporal and spectral properties of undulator radiation and being augmented to include dispersion of lens material.

A compact high brightness laser synchrotron light source for medical applications

NASA Astrophysics Data System (ADS)

Nakajima, Kazuhisa

1999-07-01

The present high-brightness hard X-ray sources have been developed as third generation synchrotron light sources based on large high energy electron storage rings and magnetic undulators. Recently availability of compact terawatt lasers arouses a great interest in the use of lasers as undulators. The laser undulator concept makes it possible to construct an attractive compact synchrotron radiation source which has been proposed as a laser synchrotron light source. This paper proposes a compact laser synchrotron light source for mediacal applications, such as an intravenous coronary angiography and microbeam therapy.

Experimental Investigation of Superradiance in a Tapered Free-Electron Laser Amplifier

DOE Office of Scientific and Technical Information (OSTI.GOV)

Hidaka, Y.; She, Y.; Murphy, J.B.

2011-03-28

We report experimental studies of the effect of undulator tapering on superradiance in a single-pass high-gain free-electron laser (FEL) amplifier. The experiments were performed at the Source Development Laboratory (SDL) of National Synchrotron Light Source (NSLS). Efficiency was nearly tripled with tapering. Both the temporal and spectral properties of the superradiant FEL along the uniform and tapered undulator were experimentally characterized using frequency-resolved optical gating (FROG) images. Numerical studies predicted pulse broadening and spectral cleaning by undulator tapering Pulse broadening was experimentally verified. However, spectral cleanliness degraded with tapering. We have performed first experiments with a tapered undulator and amore » short seed laser pulse. Pulse broadening with tapering expected from simulations was experimentally confirmed. However, the experimentally obtained spectra degraded with tapering, whereas the simulations predicted improvement. A further numerical study is under way to resolve this issue.« less

Wave-optics modeling of the optical-transport line for passive optical stochastic cooling

NASA Astrophysics Data System (ADS)

Andorf, M. B.; Lebedev, V. A.; Piot, P.; Ruan, J.

2018-03-01

Optical stochastic cooling (OSC) is expected to enable fast cooling of dense particle beams. Transition from microwave to optical frequencies enables an achievement of stochastic cooling rates which are orders of magnitude higher than ones achievable with the classical microwave based stochastic cooling systems. A subsystemcritical to the OSC scheme is the focusing optics used to image radiation from the upstream "pickup" undulator to the downstream "kicker" undulator. In this paper, we present simulation results using wave-optics calculation carried out with the SYNCHROTRON RADIATION WORKSHOP (SRW). Our simulations are performed in support to a proof-of-principle experiment planned at the Integrable Optics Test Accelerator (IOTA) at Fermilab. The calculations provide an estimate of the energy kick received by a 100-MeV electron as it propagates in the kicker undulator and interacts with the electromagnetic pulse it radiated at an earlier time while traveling through the pickup undulator.

DOE Office of Scientific and Technical Information (OSTI.GOV)

Bahrdt, J.; Follath, R.; Frentrup, W.

Reflections in synchrotron radiation beam lines tend to change the state of polarization of the radiation. This effect is more pronounced for steep angle of incidence, i.e. at low photon energy (say below 100 eV) beam lines. The APPLE II undulator UE112 at BESSY has all four magnetic rows shiftable and thus generates any state of polarization. To provide any intended polarization state at the sample we perform polarization measurements based on simple and fast linear polarization analysis that together with calculations of the undulator radiation predicts undulator settings that cancel beam line polarization effects.

Soft X-Ray Undulator

DTIC Science & Technology

1991-09-24

Hulbert, B. Sinkovic and N.V. Smith, Phys.Rev.Lett. 61, 2257 (-1988) 3. D.M. Mills, SPIE 1-345, 125 -(1990) 4. H . Onuki , Nuci. Instr. Meth. A246, 94...Science Foundation under-Contract No. DMR-86-03304. References 1. W. Weber, D.-A. Wesner, G. Guntherodt, and U. Linke, Phys.- Rev.Lett.-66, 942(1991). 2. H ...ICAL. REkVIEW LETtPS "-i58’Y cial issue 6of App!- Phys. A 49- 01989). [31-L. M. Falicov-D. T. Pierce, S. D. ’Bader,-R;’.Gronsky, K B. lihaway H J Hoit

DOE Office of Scientific and Technical Information (OSTI.GOV)

Couprie, M. E.; Benabderrahmane, C.; Berteaud, P.

The SOLEIL storage ring presents a very high fraction of its circumference dedicated to accommodate Insertion Devices (ID). Over the 25 presently planned insertion devices presenting a large variety of systems, 16 have been already installed and commissioned in September 2009. The UV-VUV region is covered with electromagnetic devices, offering tuneable polarisations. An electromagnet/permanent magnet undulator using copper sheets coils for fast switching of the helicity is under construction. 13 APPLE-II type undulators, with period ranging from 80 down to 36 mm, provide photons in the 0.1-10 keV region, some of them featuring tapering or quasi-periodicity. Five U20 in vacuummore » undulators cover typically the 3-30 keV range whereas an in vacuum wiggler, with compensation of the magnetic forces via adequate springs will cover the 10-50 keV spectral domain. R and D on cryogenic in-vacuum undulator is also under progress. A magnetic chicane using permanent magnet dipoles has also been designed in order to accommodate two canted undulators on the same straight section. A wiggler dedicated to slicing (production of femto second long pulses) is also being designed, its radiation will also serve for an X-ray beamline.« less

Contraction of an air disk caught between two different liquids

NASA Astrophysics Data System (ADS)

Thoraval, M.-J.; Thoroddsen, S. T.

2013-12-01

When a drop impacts a pool of liquid it entraps a thin disk of air under its center. This disk contracts rapidly into a bubble to minimize surface energy. Herein we use ultra-high-speed imaging to measure the contraction speed of this disk when the drop and pool are of different liquids. For miscible liquids the contraction rate is governed by the weaker of the two surface tensions. Some undulations are observed on the edge of the disk for a water drop impacting a pool of water, but not on a pool of lower surface tension. Similar results are observed for a pair of immiscible liquids.

Serial Femtosecond Crystallography of G Protein-Coupled Receptors

PubMed Central

Liu, Wei; Wacker, Daniel; Gati, Cornelius; Han, Gye Won; James, Daniel; Wang, Dingjie; Nelson, Garrett; Weierstall, Uwe; Katritch, Vsevolod; Barty, Anton; Zatsepin, Nadia A.; Li, Dianfan; Messerschmidt, Marc; Boutet, Sébastien; Williams, Garth J.; Koglin, Jason E.; Seibert, M. Marvin; Wang, Chong; Shah, Syed T.A.; Basu, Shibom; Fromme, Raimund; Kupitz, Christopher; Rendek, Kimberley N.; Grotjohann, Ingo; Fromme, Petra; Kirian, Richard A.; Beyerlein, Kenneth R.; White, Thomas A.; Chapman, Henry N.; Caffrey, Martin; Spence, John C.H.; Stevens, Raymond C.; Cherezov, Vadim

2014-01-01

X-ray crystallography of G protein-coupled receptors and other membrane proteins is hampered by difficulties associated with growing sufficiently large crystals that withstand radiation damage and yield high-resolution data at synchrotron sources. Here we used an x-ray free-electron laser (XFEL) with individual 50-fs duration x-ray pulses to minimize radiation damage and obtained a high-resolution room temperature structure of a human serotonin receptor using sub-10 µm microcrystals grown in a membrane mimetic matrix known as lipidic cubic phase. Compared to the structure solved by traditional microcrystallography from cryo-cooled crystals of about two orders of magnitude larger volume, the room temperature XFEL structure displays a distinct distribution of thermal motions and conformations of residues that likely more accurately represent the receptor structure and dynamics in a cellular environment. PMID:24357322

Performance simulation of a detector for 4th generation photon sources: The AGIPD

NASA Astrophysics Data System (ADS)

Potdevin, G.; Trunk, U.; Graafsma, H.; Agipd Consortium

2009-08-01

Future 4th generation photon sources, such as the European XFEL based in Hamburg, will deliver around 1012 X-ray photons in less than 100 fs with full lateral coherence. These new sources will offer unprecedented possibilities in photon science. The high peak brilliance, combined with a 5 MHz repetition rate poses very high demands for the 2D detectors. In order to provide appropriate detectors during XFEL startup, three dedicated development projects have been initiated, one of them being the Adaptive Gain Integrating Pixel Detector (AGIPD) project which is a collaborative effort between DESY, PSI, University of Bonn, and University of Hamburg. An essential part of the AGIPD project is the development of a simulation tool for the complete detection system. The simulation tool as well as preliminary simulations of the detector characteristics is presented.

Femtosecond X-ray Diffraction From Two-Dimensional Protein Crystals

DOE Office of Scientific and Technical Information (OSTI.GOV)

Frank, Matthias; Carlson, David B.; Hunter, Mark

2014-02-28

Here we present femtosecond x-ray diffraction patterns from two-dimensional (2-D) protein crystals using an x-ray free electron laser (XFEL). To date it has not been possible to acquire x-ray diffraction from individual 2-D protein crystals due to radiation damage. However, the intense and ultrafast pulses generated by an XFEL permits a new method of collecting diffraction data before the sample is destroyed. Utilizing a diffract-before-destroy methodology at the Linac Coherent Light Source, we observed Bragg diffraction to better than 8.5 Å resolution for two different 2-D protein crystal samples that were maintained at room temperature. These proof-of-principle results show promisemore » for structural analysis of both soluble and membrane proteins arranged as 2-D crystals without requiring cryogenic conditions or the formation of three-dimensional crystals.« less

Towards phasing using high X-ray intensity

DOE PAGES

Galli, Lorenzo; Son, Sang -Kil; Barends, Thomas R. M.; ...

2015-09-30

X-ray free-electron lasers (XFELs) show great promise for macromolecular structure determination from sub-micrometre-sized crystals, using the emerging method of serial femtosecond crystallography. The extreme brightness of the XFEL radiation can multiply ionize most, if not all, atoms in a protein, causing their scattering factors to change during the pulse, with a preferential `bleaching' of heavy atoms. This paper investigates the effects of electronic damage on experimental data collected from a Gd derivative of lysozyme microcrystals at different X-ray intensities, and the degree of ionization of Gd atoms is quantified from phased difference Fourier maps. In conclusion, a pattern sorting schememore » is proposed to maximize the ionization contrast and the way in which the local electronic damage can be used for a new experimental phasing method is discussed.« less

Multiple defocused coherent diffraction imaging: method for simultaneously reconstructing objects and probe using X-ray free-electron lasers.

PubMed

Hirose, Makoto; Shimomura, Kei; Suzuki, Akihiro; Burdet, Nicolas; Takahashi, Yukio

2016-05-30

The sample size must be less than the diffraction-limited focal spot size of the incident beam in single-shot coherent X-ray diffraction imaging (CXDI) based on a diffract-before-destruction scheme using X-ray free electron lasers (XFELs). This is currently a major limitation preventing its wider applications. We here propose multiple defocused CXDI, in which isolated objects are sequentially illuminated with a divergent beam larger than the objects and the coherent diffraction pattern of each object is recorded. This method can simultaneously reconstruct both objects and a probe from the coherent X-ray diffraction patterns without any a priori knowledge. We performed a computer simulation of the prposed method and then successfully demonstrated it in a proof-of-principle experiment at SPring-8. The prposed method allows us to not only observe broad samples but also characterize focused XFEL beams.

Serial femtosecond crystallography of soluble proteins in lipidic cubic phase

DOE PAGES

Fromme, Raimund; Ishchenko, Andrii; Metz, Markus; ...

2015-08-04

Serial femtosecond crystallography (SFX) at X-ray free-electron lasers (XFELs) enables high-resolution protein structure determination using micrometre-sized crystals at room temperature with minimal effects from radiation damage. SFX requires a steady supply of microcrystals intersecting the XFEL beam at random orientations. An LCP–SFX method has recently been introduced in which microcrystals of membrane proteins are grown and delivered for SFX data collection inside a gel-like membrane-mimetic matrix, known as lipidic cubic phase (LCP), using a special LCP microextrusion injector. Here, it is shown enabling a dramatic reduction in the amount of crystallized protein required for data collection compared with crystals deliveredmore » by liquid injectors. High-quality LCP–SFX data sets were collected for two soluble proteins, lysozyme and phycocyanin, using less than 0.1 mg of each protein.« less

Serial femtosecond crystallography of soluble proteins in lipidic cubic phase

DOE Office of Scientific and Technical Information (OSTI.GOV)

Fromme, Raimund; Ishchenko, Andrii; Metz, Markus

Serial femtosecond crystallography (SFX) at X-ray free-electron lasers (XFELs) enables high-resolution protein structure determination using micrometre-sized crystals at room temperature with minimal effects from radiation damage. SFX requires a steady supply of microcrystals intersecting the XFEL beam at random orientations. An LCP–SFX method has recently been introduced in which microcrystals of membrane proteins are grown and delivered for SFX data collection inside a gel-like membrane-mimetic matrix, known as lipidic cubic phase (LCP), using a special LCP microextrusion injector. Here, it is shown enabling a dramatic reduction in the amount of crystallized protein required for data collection compared with crystals deliveredmore » by liquid injectors. High-quality LCP–SFX data sets were collected for two soluble proteins, lysozyme and phycocyanin, using less than 0.1 mg of each protein.« less

Correlations in Scattered X-Ray Laser Pulses Reveal Nanoscale Structural Features of Viruses

DOE PAGES

Kurta, Ruslan P.; Donatelli, Jeffrey J.; Yoon, Chun Hong; ...

2017-10-12

We use extremely bright and ultrashort pulses from an x-ray free-electron laser (XFEL) to measure correlations in x rays scattered from individual bioparticles. This allows us to go beyond the traditional crystallography and single-particle imaging approaches for structure investigations. We employ angular correlations to recover the three-dimensional (3D) structure of nanoscale viruses from x-ray diffraction data measured at the Linac Coherent Light Source. Correlations provide us with a comprehensive structural fingerprint of a 3D virus, which we use both for model-based and ab initio structure recovery. The analyses reveal a clear indication that the structure of the viruses deviates frommore » the expected perfect icosahedral symmetry. Lastly, our results anticipate exciting opportunities for XFEL studies of the structure and dynamics of nanoscale objects by means of angular correlations.« less

Superconducting cavity material for the European XFEL

NASA Astrophysics Data System (ADS)

Singer, W.; Singer, X.; Brinkmann, A.; Iversen, J.; Matheisen, A.; Navitski, A.; Tamashevich, Y.; Michelato, P.; Monaco, L.

2015-08-01

Analysis of the strategy for superconducting cavity material procurement and quality management is done on the basis of the experience with the cavity production for the European x-ray free electron laser (EXFEL) facility. An adjustment of the material specification to EXFEL requirements, procurement of material, quality control (QC), documentation, and shipment to cavity producers have been worked out and carried out by DESY. A multistep process of qualification of the material suppliers included detailed material testing, single- and nine-cell cavity fabrication, and cryogenic radiofrequency tests. Production of about 25 000 semi-finished parts of high purity niobium and niobium-titanium alloy in a period of three years has been divided finally between companies Heraeus, Tokyo Denkai, Ningxia OTIC, and PLANSEE. Consideration of large-grain (LG) material as a possible option for the EXFEL has resulted in the production of one cryogenic module consisting of seven (out of eight) LG cavities. LG materials fulfilled the EXFEL requirements and showed even 25% to 30% higher unloaded quality factor. A possible shortage of the required quantity of LG material on the market led, however, to the choice of conventional fine-grain (FG) material. Eddy-current scanning (ECS) has been applied as an additional QC tool for the niobium sheets and contributed significantly to the material qualification and sorting. Two percent of the sheets have been rejected, which potentially could affect up to one-third of the cavities. The main imperfections and defects in the rejected sheets have been analyzed. Samples containing foreign material inclusions have been extracted from the sheets and electrochemically polished. Some inclusions remained even after 150 μm surface layer removal. Indications of foreign material inclusions have been found in the industrially fabricated and treated cavities and a deeper analysis of the defects has been performed.

Wave-Optics Modeling of the Optical-Transport Line for Passive Optical Stochastic Cooling

DOE PAGES

Andorf, M. B.; Lebedev, V. A.; Piot, P.; ...

2018-03-01

Optical stochastic cooling (OSC) is expected to enable fast cooling of dense particle beams. Transition from microwave to optical frequencies enables an achievement of stochastic cooling rates which are orders of magnitude higher than ones achievable with the classical microwave based stochastic cooling systems. A subsystemcritical to the OSC scheme is the focusing optics used to image radiation from the upstream “pickup” undulator to the downstream “kicker” undulator. In this paper, we present simulation results using wave-optics calculation carried out with the Synchrotron Radiation Workshop (SRW). Our simulations are performed in support to a proof-of-principle experiment planned at the Integrablemore » Optics Test Accelerator (IOTA) at Fermilab. The calculations provide an estimate of the energy kick received by a 100-MeV electron as it propagates in the kicker undulator and interacts with the electromagnetic pulse it radiated at an earlier time while traveling through the pickup undulator.« less

DOE Office of Scientific and Technical Information (OSTI.GOV)

Kesgin, Ibrahim; Kasa, Matthew; Ivanyushenkov, Yury

Here, this paper presents test results on a prototype superconducting undulator magnet fabricated using 15% Zr-doped rare-earth barium copper oxide high temperature superconducting (HTS) tapes. On an 11-pole magnet we demonstrate an engineering current density, J e, of more than 2.1 kA mm -2 at 4.2 K, a value that is 40% higher than reached in comparable devices wound with NbTi-wire, which is used in all currently operating superconducting undulators. A novel winding scheme enabling the continuous winding of tape-shaped conductors into the intricate undulator magnets as well as a partial interlayer insulation procedure were essential in reaching this advancemore » in performance. Currently, there are rapid advances in the performance of HTS; therefore, achieving even higher current densities in an undulator structure or/and operating it at temperatures higher than 4.2 K will be possible, which would substantially simplify the cryogenic design and reduce overall costs.« less

DOE Office of Scientific and Technical Information (OSTI.GOV)

Ivanyushenkov, Y.; Doose, C.; Fuerst, J.

Development of superconducting undulator (SCU) technology continues at the Advanced Photon Source (APS). The experience of building and successful operating the first short-length, 16-mm period length superconducting undulator SCU0 paved the way for a 1-m long, 18-mm period device— SCU18-1— which has been in operation since May 2015. The APS SCU team has also built and tested a 1.5-m long, 21-mm period length undulator as a part of the LCLS SCU R&D program, aimed at demonstration of SCU technology availability for free electron lasers. This undulator successfully achieved all the requirements including a phase error of 5° RMS. Our teammore » has recently completed one more 1-m long, 18-mm period length undulator— SCU18-2— that is replacing the SCU0. We are also working on a helical SCU for the APS. The status of these projects will be presented.« less

DOE Office of Scientific and Technical Information (OSTI.GOV)

Andorf, M. B.; Lebedev, V. A.; Piot, P.

Optical stochastic cooling (OSC) is expected to enable fast cooling of dense particle beams. Transition from microwave to optical frequencies enables an achievement of stochastic cooling rates which are orders of magnitude higher than ones achievable with the classical microwave based stochastic cooling systems. A subsystemcritical to the OSC scheme is the focusing optics used to image radiation from the upstream “pickup” undulator to the downstream “kicker” undulator. In this paper, we present simulation results using wave-optics calculation carried out with the Synchrotron Radiation Workshop (SRW). Our simulations are performed in support to a proof-of-principle experiment planned at the Integrablemore » Optics Test Accelerator (IOTA) at Fermilab. The calculations provide an estimate of the energy kick received by a 100-MeV electron as it propagates in the kicker undulator and interacts with the electromagnetic pulse it radiated at an earlier time while traveling through the pickup undulator.« less

Microwave and plasma-assisted modification of composite fiber surface topography

DOEpatents

Paulauskas, Felix L [Knoxville, TN; White, Terry L [Knoxville, TN; Bigelow, Timothy S [Knoxville, TN

2003-02-04

The present invention introduces a novel method for producing an undulated surface on composite fibers using plasma technology and microwave radiation. The undulated surface improves the mechanical interlocking of the fibers to composite resins and enhances the mechanical strength and interfacial sheer strength of the composites in which they are introduced.

Redesign of the End Group in the 3.9 GHz LCLS-II Cavity

DOE Office of Scientific and Technical Information (OSTI.GOV)

Lunin, Andrei; Gonin, Ivan; Khabiboulline, Timergali

Development and production of Linac Coherent Light Source II (LCLS-II) is underway. The central part of LCLS-II is a continuous wave superconducting RF (CW SCRF) electron linac. The 3.9 GHz third harmonic cavity similar to the XFEL design will be used in LCLS-II for linearizing the longitudinal beam profile*. The initial design of the 3.9 GHz cavity developed for XFEL project has a large, 40 mm, beam pipe aperture for better higher-order mode (HOM) damping. It is resulted in dipole HOMs with frequencies nearby the operating mode, which causes difficulties with HOM coupler notch filter tuning. The CW linac operationmore » requires an extra caution in the design of the HOM coupler in order to prevent its possible overheating. In this paper we present the modified 3.9 GHz cavity End Group for meeting the LCLS-II requirements« less

On the release of cppxfel for processing X-ray free-electron laser images.

PubMed

Ginn, Helen Mary; Evans, Gwyndaf; Sauter, Nicholas K; Stuart, David Ian

2016-06-01

As serial femtosecond crystallography expands towards a variety of delivery methods, including chip-based methods, and smaller collected data sets, the requirement to optimize the data analysis to produce maximum structure quality is becoming increasingly pressing. Here cppxfel , a software package primarily written in C++, which showcases several data analysis techniques, is released. This software package presently indexes images using DIALS (diffraction integration for advanced light sources) and performs an initial orientation matrix refinement, followed by post-refinement of individual images against a reference data set. Cppxfel is released with the hope that the unique and useful elements of this package can be repurposed for existing software packages. However, as released, it produces high-quality crystal structures and is therefore likely to be also useful to experienced users of X-ray free-electron laser (XFEL) software who wish to maximize the information extracted from a limited number of XFEL images.

High-resolution structure of viruses from random diffraction snapshots

PubMed Central

Hosseinizadeh, A.; Schwander, P.; Dashti, A.; Fung, R.; D'Souza, R. M.; Ourmazd, A.

2014-01-01

The advent of the X-ray free-electron laser (XFEL) has made it possible to record diffraction snapshots of biological entities injected into the X-ray beam before the onset of radiation damage. Algorithmic means must then be used to determine the snapshot orientations and thence the three-dimensional structure of the object. Existing Bayesian approaches are limited in reconstruction resolution typically to 1/10 of the object diameter, with the computational expense increasing as the eighth power of the ratio of diameter to resolution. We present an approach capable of exploiting object symmetries to recover three-dimensional structure to high resolution, and thus reconstruct the structure of the satellite tobacco necrosis virus to atomic level. Our approach offers the highest reconstruction resolution for XFEL snapshots to date and provides a potentially powerful alternative route for analysis of data from crystalline and nano-crystalline objects. PMID:24914154

High-resolution structure of viruses from random diffraction snapshots.

PubMed

Hosseinizadeh, A; Schwander, P; Dashti, A; Fung, R; D'Souza, R M; Ourmazd, A

2014-07-17

The advent of the X-ray free-electron laser (XFEL) has made it possible to record diffraction snapshots of biological entities injected into the X-ray beam before the onset of radiation damage. Algorithmic means must then be used to determine the snapshot orientations and thence the three-dimensional structure of the object. Existing Bayesian approaches are limited in reconstruction resolution typically to 1/10 of the object diameter, with the computational expense increasing as the eighth power of the ratio of diameter to resolution. We present an approach capable of exploiting object symmetries to recover three-dimensional structure to high resolution, and thus reconstruct the structure of the satellite tobacco necrosis virus to atomic level. Our approach offers the highest reconstruction resolution for XFEL snapshots to date and provides a potentially powerful alternative route for analysis of data from crystalline and nano-crystalline objects.

Fixed target matrix for femtosecond time-resolved and in situ serial micro-crystallography.

PubMed

Mueller, C; Marx, A; Epp, S W; Zhong, Y; Kuo, A; Balo, A R; Soman, J; Schotte, F; Lemke, H T; Owen, R L; Pai, E F; Pearson, A R; Olson, J S; Anfinrud, P A; Ernst, O P; Dwayne Miller, R J

2015-09-01

We present a crystallography chip enabling in situ room temperature crystallography at microfocus synchrotron beamlines and X-ray free-electron laser (X-FEL) sources. Compared to other in situ approaches, we observe extremely low background and high diffraction data quality. The chip design is robust and allows fast and efficient loading of thousands of small crystals. The ability to load a large number of protein crystals, at room temperature and with high efficiency, into prescribed positions enables high throughput automated serial crystallography with microfocus synchrotron beamlines. In addition, we demonstrate the application of this chip for femtosecond time-resolved serial crystallography at the Linac Coherent Light Source (LCLS, Menlo Park, California, USA). The chip concept enables multiple images to be acquired from each crystal, allowing differential detection of changes in diffraction intensities in order to obtain high signal-to-noise and fully exploit the time resolution capabilities of XFELs.

Fixed target matrix for femtosecond time-resolved and in situ serial micro-crystallography

PubMed Central

Mueller, C.; Marx, A.; Epp, S. W.; Zhong, Y.; Kuo, A.; Balo, A. R.; Soman, J.; Schotte, F.; Lemke, H. T.; Owen, R. L.; Pai, E. F.; Pearson, A. R.; Olson, J. S.; Anfinrud, P. A.; Ernst, O. P.; Dwayne Miller, R. J.

2015-01-01

We present a crystallography chip enabling in situ room temperature crystallography at microfocus synchrotron beamlines and X-ray free-electron laser (X-FEL) sources. Compared to other in situ approaches, we observe extremely low background and high diffraction data quality. The chip design is robust and allows fast and efficient loading of thousands of small crystals. The ability to load a large number of protein crystals, at room temperature and with high efficiency, into prescribed positions enables high throughput automated serial crystallography with microfocus synchrotron beamlines. In addition, we demonstrate the application of this chip for femtosecond time-resolved serial crystallography at the Linac Coherent Light Source (LCLS, Menlo Park, California, USA). The chip concept enables multiple images to be acquired from each crystal, allowing differential detection of changes in diffraction intensities in order to obtain high signal-to-noise and fully exploit the time resolution capabilities of XFELs. PMID:26798825

Time zero determination for FEL pump-probe studies based on ultrafast melting of bismuth.

PubMed

Epp, S W; Hada, M; Zhong, Y; Kumagai, Y; Motomura, K; Mizote, S; Ono, T; Owada, S; Axford, D; Bakhtiarzadeh, S; Fukuzawa, H; Hayashi, Y; Katayama, T; Marx, A; Müller-Werkmeister, H M; Owen, R L; Sherrell, D A; Tono, K; Ueda, K; Westermeier, F; Miller, R J D

2017-09-01

A common challenge for pump-probe studies of structural dynamics at X-ray free-electron lasers (XFELs) is the determination of time zero (T 0 )-the time an optical pulse (e.g., an optical laser) arrives coincidently with the probe pulse (e.g., a XFEL pulse) at the sample position. In some cases, T 0 might be extracted from the structural dynamics of the sample's observed response itself, but generally, an independent robust method is required or would be superior to the inferred determination of T 0 . In this paper, we present how the structural dynamics in ultrafast melting of bismuth can be exploited for a quickly performed, reliable and accurate determination of T 0 with a precision below 20 fs and an overall experimental accuracy of 50 fs to 150 fs (estimated). Our approach is potentially useful and applicable for fixed-target XFEL experiments, such as serial femtosecond crystallography, utilizing an optical pump pulse in the ultraviolet to near infrared spectral range and a pixelated 2D photon detector for recording crystallographic diffraction patterns in transmission geometry. In comparison to many other suitable approaches, our method is fairly independent of the pumping wavelength (UV-IR) as well as of the X-ray energy and offers a favorable signal contrast. The technique is exploitable not only for the determination of temporal characteristics of the experiment at the interaction point but also for investigating important conditions affecting experimental control such as spatial overlap and beam spot sizes.

Capture and X-ray diffraction studies of protein microcrystals in a microfluidic trap array

DOE Office of Scientific and Technical Information (OSTI.GOV)

Lyubimov, Artem Y.; Stanford University, Stanford, CA 94305; Stanford University, Stanford, CA 94305

A microfluidic platform has been developed for the capture and X-ray analysis of protein microcrystals, affording a means to improve the efficiency of XFEL and synchrotron experiments. X-ray free-electron lasers (XFELs) promise to enable the collection of interpretable diffraction data from samples that are refractory to data collection at synchrotron sources. At present, however, more efficient sample-delivery methods that minimize the consumption of microcrystalline material are needed to allow the application of XFEL sources to a wide range of challenging structural targets of biological importance. Here, a microfluidic chip is presented in which microcrystals can be captured at fixed, addressablemore » points in a trap array from a small volume (<10 µl) of a pre-existing slurry grown off-chip. The device can be mounted on a standard goniostat for conducting diffraction experiments at room temperature without the need for flash-cooling. Proof-of-principle tests with a model system (hen egg-white lysozyme) demonstrated the high efficiency of the microfluidic approach for crystal harvesting, permitting the collection of sufficient data from only 265 single-crystal still images to permit determination and refinement of the structure of the protein. This work shows that microfluidic capture devices can be readily used to facilitate data collection from protein microcrystals grown in traditional laboratory formats, enabling analysis when cryopreservation is problematic or when only small numbers of crystals are available. Such microfluidic capture devices may also be useful for data collection at synchrotron sources.« less

Collimation study for LCLS

NASA Astrophysics Data System (ADS)

Marin, E.; Raubenhaimer, T.; Welch, J.; White, G.

2017-09-01

In this paper we investigate the power deposition along the undulator section of the SLAC Linac Coherent Light Source (LCLS) due to the primary e--beam but also due to potential secondary particles. The expected beam distribution after the LCLS injector is deliberately broadened as an approximated representation of the beam halo. Secondary particles, as e+, e- and photons, are generated as a result of tracking the intercepted beam through a dense material. This process is carried out by means of GEANT-4, which has been convoluted into our main tracking engine, LUCRETIA. Simulations show no losses along the undulator section when assuming the nominal primary beam and collimator gaps. However when opening the gaps of collimators located at the first collimator section, by 25%, the fattened beam is partially intercepted by the second collimator section, which is aligned to the undulators. Secondary particles, mostly photons generated at the second collimator section, deposit their energy along the undulator section, at a rate of the order of a milliwatt.

Evolution of Martian polar landscapes - Interplay of long-term variations in perennial ice cover and dust storm intensity

NASA Technical Reports Server (NTRS)

Cutts, J. A.; Blasius, K. R.; Roberts, W. J.

1979-01-01

The discovery of a new type of Martian polar terrain, called undulating plain, is reported and the evolution of the plains and other areas of the Martian polar region is discussed in terms of the trapping of dust by the perennial ice cover. High-resolution Viking Orbiter 2 observations of the north polar terrain reveal perennially ice-covered surfaces with low relief, wavelike, regularly spaced, parallel ridges and troughs (undulating plains) occupying areas of the polar terrain previously thought to be flat, and associated with troughs of considerable local relief which exhibit at least partial annual melting. It is proposed that the wavelike topography of the undulating plains originates from long-term periodic variations in cyclical dust precipitation at the margin of a growing or receding perennial polar cap in response to changes in insolation. The troughs are proposed to originate from areas of steep slope in the undulating terrain which have lost their perennial ice cover and have become incapable of trapping dust. The polar landscape thus appears to record the migrations, expansions and contractions of the Martian polar cap.

Theory of electromagnetic insertion devices and the corresponding synchrotron radiation

DOE Office of Scientific and Technical Information (OSTI.GOV)

Shumail, Muhammad; Tantawi, Sami G.

Permanent magnet insertion devices (IDs), which are the main radiation generating devices in synchrotron light sources and free-electron lasers, use a time-invariant but space-periodic magnetic field to wiggle relativistic electrons for short-wavelength radiation generation. Recently, a high power microwave based undulator has also been successfully demonstrated at SLAC which promises the advantage of dynamic tunability of radiation spectrum and polarization. Such IDs employ transverse elecromagnetic fields which are periodic in both space and time to undulate the electrons. In this paper we develop a detailed theory of the principle of electromagnetic IDs from first principles for both linear and circularmore » polarization modes. The electromagnetic equivalent definitions of undulator period (λ u) and undulator deflection parameter (K) are derived. In the inertial frame where the average momentum of the electron is zero, we obtain the figure-8-like trajectory for the linear polarization mode and the circular trajectory for the circular polarization mode. As a result, the corresponding radiation spectra and the intensity of harmonics is also calculated.« less

Theory of electromagnetic insertion devices and the corresponding synchrotron radiation

DOE PAGES

Shumail, Muhammad; Tantawi, Sami G.

2016-07-27

Permanent magnet insertion devices (IDs), which are the main radiation generating devices in synchrotron light sources and free-electron lasers, use a time-invariant but space-periodic magnetic field to wiggle relativistic electrons for short-wavelength radiation generation. Recently, a high power microwave based undulator has also been successfully demonstrated at SLAC which promises the advantage of dynamic tunability of radiation spectrum and polarization. Such IDs employ transverse elecromagnetic fields which are periodic in both space and time to undulate the electrons. In this paper we develop a detailed theory of the principle of electromagnetic IDs from first principles for both linear and circularmore » polarization modes. The electromagnetic equivalent definitions of undulator period (λ u) and undulator deflection parameter (K) are derived. In the inertial frame where the average momentum of the electron is zero, we obtain the figure-8-like trajectory for the linear polarization mode and the circular trajectory for the circular polarization mode. As a result, the corresponding radiation spectra and the intensity of harmonics is also calculated.« less

Diffraction effects in mechanically chopped laser pulses

NASA Astrophysics Data System (ADS)

Gambhir, Samridhi; Singh, Mandip

2018-06-01

A mechanical beam chopper consists of a rotating disc of regularly spaced wide slits which allow light to pass through them. A continuous light beam, after passing through the rotating disc, is switched-on and switched-off periodically, and a series of optical pulses are produced. The intensity of each pulse is expected to rise and fall smoothly with time. However, a careful study has revealed that the edges of mechanically chopped laser light pulses consist of periodic intensity undulations which can be detected with a photo detector. In this paper, it is shown that the intensity undulations in mechanically chopped laser pulses are produced by diffraction of light from the rotating disc, and a detailed explanation is given of the intensity undulations in mechanically chopped laser pulses. An experiment presented in this paper provides an efficient method to capture a one dimensional diffraction profile of light from a straight sharp-edge in the time domain. In addition, the experiment accurately measures wavelengths of three different laser beams from the undulations in mechanically chopped laser light pulses.

Theory of electromagnetic insertion devices and the corresponding synchrotron radiation

NASA Astrophysics Data System (ADS)

Shumail, Muhammad; Tantawi, Sami G.

2016-07-01

Permanent magnet insertion devices (IDs), which are the main radiation generating devices in synchrotron light sources and free-electron lasers, use a time-invariant but space-periodic magnetic field to wiggle relativistic electrons for short-wavelength radiation generation. Recently, a high power microwave based undulator has also been successfully demonstrated at SLAC which promises the advantage of dynamic tunability of radiation spectrum and polarization. Such IDs employ transverse elecromagnetic fields which are periodic in both space and time to undulate the electrons. In this paper we develop a detailed theory of the principle of electromagnetic IDs from first principles for both linear and circular polarization modes. The electromagnetic equivalent definitions of undulator period (λu) and undulator deflection parameter (K ) are derived. In the inertial frame where the average momentum of the electron is zero, we obtain the figure-8-like trajectory for the linear polarization mode and the circular trajectory for the circular polarization mode. The corresponding radiation spectra and the intensity of harmonics is also calculated.

Method for the production of wideband THz radiation

DOEpatents

Krafft, Geoffrey A [Newport News, VA

2008-01-01

A method for the production of extremely wide bandwidth THz radiation comprising: delivering an electron beam from a source to an undulator that does not deflect the angle or transversely move the electron beam; and optimizing the undulator to yield peak emission in the middle of the THz band (1 THz). These objectives are accomplished by magnetically bending the orbit of the incoming electron beam in the undulator according to the function x(z)=x.sub.o exp(-z.sup.2/2.sigma..sup.2) and controlling the transverse magnetic field to be B(z)=B.sub.0(1-z.sup.2/.sigma..sup.2)exp(-z.sup.2/2.sigma..sup.2).

Pore-scale analysis of the minimum liquid film thickness around elongated bubbles in confined gas-liquid flows

NASA Astrophysics Data System (ADS)

Magnini, M.; Beisel, A. M.; Ferrari, A.; Thome, J. R.

2017-11-01

The fluid mechanics of elongated bubbles in confined gas-liquid flows in micro-geometries is important in pore-scale flow processes for enhanced oil recovery and mobilization of colloids in unsaturated soil. The efficiency of such processes is traditionally related to the thickness of the liquid film trapped between the elongated bubble and the pore's wall, which is assumed constant. However, the surface of long bubbles presents undulations in the vicinity of the rear meniscus, which may significantly decrease the local thickness of the liquid film, thus impacting the process of interest. This study presents a systematic analysis of these undulations and the minimum film thickness induced in the range Ca = 0.001- 0.5 and Re = 0.1- 2000 . Pore-scale Computational Fluid Dynamics (CFD) simulations are performed with a self-improved version of the opensource solver ESI OpenFOAM which is based on a Volume of Fluid method to track the gas-liquid interface. A lubrication model based on the extension of the classical axisymmetric Bretherton theory is utilized to better understand the CFD results. The profiles of the rear meniscus of the bubble obtained with the lubrication model agree fairly well with those extracted from the CFD simulations. This study shows that the Weber number of the flow, We = Ca Re , is the parameter that best describes the dynamics of the interfacial waves. When We < 0.1, a single wave crest is observed and the minimum film thickness tends to an asymptotic value, which depends on the capillary number, as We → 0. Undulations dampen as the capillary number increases and disappear completely when Ca = 0.5 . When We > 0.1, a larger number of wave crests becomes evident on the surface of the rear meniscus of the bubble. The liquid film thickness at the crests of the undulations thins considerably as the Reynolds number is increased, down to less than 60% of the value measured in the flat film region. This may significantly influence important

A simple optical system delivering a tunable micrometer pink beam that can compensate for heat-induced deformations

DOE Office of Scientific and Technical Information (OSTI.GOV)

Reininger, Ruben; Liu, Zunping; Doumy, Gilles

2015-06-09

The radiation from an undulator reflected from one or more optical elements (usually termed `pink-beam') is used in photon-hungry experiments. The optical elements serve as a high-energy cutoff and for focusing purposes. One of the issues with this configuration is maintaining the focal spot dimension as the energy of the undulator is varied, since this changes the heat load absorbed by the first optical element. Finite-element analyses of the power absorbed by a side water-cooled mirror exposed to the radiation emitted by an undulator at the Advanced Photon Source (APS) and at the APS after the proposed upgrade (APSU) revealsmore » that the mirror deformation is very close to a convex cylinder creating a virtual source closer to the mirror than the undulator source. Here a simple optical system is described based on a Kirkpatrick–Baez pair which keeps the focus size to less than 2 µm (in the APSU case) with a working distance of 350 mm despite the heat-load-induced change in source distance. Detailed ray tracings at several photon energies for both the APS and APSU show that slightly decreasing the angle of incidence on the mirrors corrects the change in the `virtual' position of the source. The system delivers more than 70% of the first undulator harmonic with very low higher-orders contamination for energies between 5 and 10 keV.« less

Laser wakefield accelerated electron beam monitoring and control

DOE Office of Scientific and Technical Information (OSTI.GOV)

Koga, J. K.; Mori, M.; Kotaki, H.

2016-03-25

We will discuss our participation in the ImPACT project, which has as one of its goals the development of an ultra-compact electron accelerator using lasers (< 1 GeV, < 10   m) and the generation of an x-ray beam from the accelerated electrons. Within this context we will discuss our investigation into electron beam monitoring and control. Since laser accelerated electrons will be used for x-ray beam generation combined with an undulator, we will present investigation into the possibilities of the improvement of electron beam emittance through cooling.

High-resolution single-shot spectral monitoring of hard x-ray free-electron laser radiation

DOE Office of Scientific and Technical Information (OSTI.GOV)

Makita, M.; Karvinen, P.; Zhu, D.

We have developed an on-line spectrometer for hard x-ray free-electron laser (XFEL) radiation based on a nanostructured diamond diffraction grating and a bent crystal analyzer. Our method provides high spectral resolution, interferes negligibly with the XFEL beam, and can withstand the intense hard x-ray pulses at high repetition rates of >100 Hz. The spectrometer is capable of providing shot-to-shot spectral information for the normalization of data obtained in scientific experiments and optimization of the accelerator operation parameters. We have demonstrated these capabilities of the setup at the Linac Coherent Light Source, in self-amplified spontaneous emission mode at full energy ofmore » >1 mJ with a 120 Hz repetition rate, obtaining a resolving power of Ε/δΕ > 3 × 10 4. In conclusion, the device was also used to monitor the effects of pulse duration down to 8 fs by analysis of the spectral spike width.« less

Electron and fluorescence spectra of a water molecule irradiated by an x-ray free-electron laser pulse

NASA Astrophysics Data System (ADS)

Schäfer, Julia M.; Inhester, Ludger; Son, Sang-Kil; Fink, Reinhold F.; Santra, Robin

2018-05-01

With the highly intense x-ray light generated by x-ray free-electron lasers (XFELs), molecular samples can be ionized many times in a single pulse. Here we report on a computational study of molecular spectroscopy at the high x-ray intensity provided by XFELs. Calculated photoelectron, Auger electron, and x-ray fluorescence spectra are presented for a single water molecule that reaches many electronic hole configurations through repeated ionization steps. The rich details shown in the spectra depend on the x-ray pulse parameters in a nonintuitive way. We discuss how the observed trends can be explained by the competition of microscopic electronic transition processes. A detailed comparison between spectra calculated within the independent-atom model and within the molecular-orbital framework highlights the chemical sensitivity of the spectral lines of multiple-hole configurations. Our results demonstrate how x-ray multiphoton ionization-related effects such as charge-rearrangement-enhanced x-ray ionization of molecules and frustrated absorption manifest themselves in the electron and fluorescence spectra.

Acoustic Injectors for Drop-On-Demand Serial Femtosecond Crystallography.

PubMed

Roessler, Christian G; Agarwal, Rakhi; Allaire, Marc; Alonso-Mori, Roberto; Andi, Babak; Bachega, José F R; Bommer, Martin; Brewster, Aaron S; Browne, Michael C; Chatterjee, Ruchira; Cho, Eunsun; Cohen, Aina E; Cowan, Matthew; Datwani, Sammy; Davidson, Victor L; Defever, Jim; Eaton, Brent; Ellson, Richard; Feng, Yiping; Ghislain, Lucien P; Glownia, James M; Han, Guangye; Hattne, Johan; Hellmich, Julia; Héroux, Annie; Ibrahim, Mohamed; Kern, Jan; Kuczewski, Anthony; Lemke, Henrik T; Liu, Pinghua; Majlof, Lars; McClintock, William M; Myers, Stuart; Nelsen, Silke; Olechno, Joe; Orville, Allen M; Sauter, Nicholas K; Soares, Alexei S; Soltis, S Michael; Song, Heng; Stearns, Richard G; Tran, Rosalie; Tsai, Yingssu; Uervirojnangkoorn, Monarin; Wilmot, Carrie M; Yachandra, Vittal; Yano, Junko; Yukl, Erik T; Zhu, Diling; Zouni, Athina

2016-04-05

X-ray free-electron lasers (XFELs) provide very intense X-ray pulses suitable for macromolecular crystallography. Each X-ray pulse typically lasts for tens of femtoseconds and the interval between pulses is many orders of magnitude longer. Here we describe two novel acoustic injection systems that use focused sound waves to eject picoliter to nanoliter crystal-containing droplets out of microplates and into the X-ray pulse from which diffraction data are collected. The on-demand droplet delivery is synchronized to the XFEL pulse scheme, resulting in X-ray pulses intersecting up to 88% of the droplets. We tested several types of samples in a range of crystallization conditions, wherein the overall crystal hit ratio (e.g., fraction of images with observable diffraction patterns) is a function of the microcrystal slurry concentration. We report crystal structures from lysozyme, thermolysin, and stachydrine demethylase (Stc2). Additional samples were screened to demonstrate that these methods can be applied to rare samples. Copyright © 2016 Elsevier Ltd. All rights reserved.

Serial snapshot crystallography for materials science with SwissFEL

DOE PAGES

Dejoie, Catherine; Smeets, Stef; Baerlocher, Christian; ...

2015-04-21

New opportunities for studying (sub)microcrystalline materials with small unit cells, both organic and inorganic, will open up when the X-ray free electron laser (XFEL) presently being constructed in Switzerland (SwissFEL) comes online in 2017. Our synchrotron-based experiments mimicking the 4%-energy-bandpass mode of the SwissFEL beam show that it will be possible to record a diffraction pattern of up to 10 randomly oriented crystals in a single snapshot, to index the resulting reflections, and to extract their intensities reliably. The crystals are destroyed with each XFEL pulse, but by combining snapshots from several sets of crystals, a complete set of datamore » can be assembled, and crystal structures of materials that are difficult to analyze otherwise will become accessible. Even with a single shot, at least a partial analysis of the crystal structure will be possible, and with 10–50 femtosecond pulses, this offers tantalizing possibilities for time-resolved studies.« less

Time-resolved X-ray spectroscopies of chemical systems: New perspectives

PubMed Central

Chergui, Majed

2016-01-01

The past 3–5 years have witnessed a dramatic increase in the number of time-resolved X-ray spectroscopic studies, mainly driven by novel technical and methodological developments. The latter include (i) the high repetition rate optical pump/X-ray probe studies, which have greatly boosted the signal-to-noise ratio for picosecond (ps) X-ray absorption spectroscopy studies, while enabling ps X-ray emission spectroscopy (XES) at synchrotrons; (ii) the X-ray free electron lasers (XFELs) are a game changer and have allowed the first femtosecond (fs) XES and resonant inelastic X-ray scattering experiments to be carried out; (iii) XFELs are also opening the road to the development of non-linear X-ray methods. In this perspective, I will mainly focus on the most recent technical developments and briefly address some examples of scientific questions that have been addressed thanks to them. I will look at the novel opportunities in the horizon. PMID:27376102

Insights into photosystem II from isomorphous difference Fourier maps of femtosecond X-ray diffraction data and quantum mechanics/molecular mechanics structural models

DOE PAGES

Wang, Jimin; Askerka, Mikhail; Brudvig, Gary W.; ...

2017-01-12

Understanding structure–function relations in photosystem II (PSII) is important for the development of biomimetic photocatalytic systems. X-ray crystallography, computational modeling, and spectroscopy have played central roles in elucidating the structure and function of PSII. Recent breakthroughs in femtosecond X-ray crystallography offer the possibility of collecting diffraction data from the X-ray free electron laser (XFEL) before radiation damage of the sample, thereby overcoming the main challenge of conventional X-ray diffraction methods. However, the interpretation of XFEL data from PSII intermediates is challenging because of the issues regarding data-processing, uncertainty on the precise positions of light oxygen atoms next to heavy metalmore » centers, and different kinetics of the S-state transition in microcrystals compared to solution. Lastly, we summarize recent advances and outstanding challenges in PSII structure–function determination with emphasis on the implementation of quantum mechanics/molecular mechanics techniques combined with isomorphous difference Fourier maps, direct methods, and high-resolution spectroscopy.« less

On the release of cppxfel for processing X-ray free-electron laser images

DOE PAGES

Ginn, Helen Mary; Evans, Gwyndaf; Sauter, Nicholas K.; ...

2016-05-11

As serial femtosecond crystallography expands towards a variety of delivery methods, including chip-based methods, and smaller collected data sets, the requirement to optimize the data analysis to produce maximum structure quality is becoming increasingly pressing. Herecppxfel, a software package primarily written in C++, which showcases several data analysis techniques, is released. This software package presently indexes images using DIALS (diffraction integration for advanced light sources) and performs an initial orientation matrix refinement, followed by post-refinement of individual images against a reference data set.Cppxfelis released with the hope that the unique and useful elements of this package can be repurposed formore » existing software packages. However, as released, it produces high-quality crystal structures and is therefore likely to be also useful to experienced users of X-ray free-electron laser (XFEL) software who wish to maximize the information extracted from a limited number of XFEL images.« less

High-resolution single-shot spectral monitoring of hard x-ray free-electron laser radiation

DOE PAGES

Makita, M.; Karvinen, P.; Zhu, D.; ...

2015-10-16

We have developed an on-line spectrometer for hard x-ray free-electron laser (XFEL) radiation based on a nanostructured diamond diffraction grating and a bent crystal analyzer. Our method provides high spectral resolution, interferes negligibly with the XFEL beam, and can withstand the intense hard x-ray pulses at high repetition rates of >100 Hz. The spectrometer is capable of providing shot-to-shot spectral information for the normalization of data obtained in scientific experiments and optimization of the accelerator operation parameters. We have demonstrated these capabilities of the setup at the Linac Coherent Light Source, in self-amplified spontaneous emission mode at full energy ofmore » >1 mJ with a 120 Hz repetition rate, obtaining a resolving power of Ε/δΕ > 3 × 10 4. In conclusion, the device was also used to monitor the effects of pulse duration down to 8 fs by analysis of the spectral spike width.« less

Insights into Photosystem II from Isomorphous Difference Fourier Maps of Femtosecond X-ray Diffraction Data and Quantum Mechanics/Molecular Mechanics Structural Models.

PubMed

Wang, Jimin; Askerka, Mikhail; Brudvig, Gary W; Batista, Victor S

2017-02-10

Understanding structure-function relations in photosystem II (PSII) is important for the development of biomimetic photocatalytic systems. X-ray crystallography, computational modeling, and spectroscopy have played central roles in elucidating the structure and function of PSII. Recent breakthroughs in femtosecond X-ray crystallography offer the possibility of collecting diffraction data from the X-ray free electron laser (XFEL) before radiation damage of the sample, thereby overcoming the main challenge of conventional X-ray diffraction methods. However, the interpretation of XFEL data from PSII intermediates is challenging because of the issues regarding data-processing, uncertainty on the precise positions of light oxygen atoms next to heavy metal centers, and different kinetics of the S-state transition in microcrystals compared to solution. Here, we summarize recent advances and outstanding challenges in PSII structure-function determination with emphasis on the implementation of quantum mechanics/molecular mechanics techniques combined with isomorphous difference Fourier maps, direct methods, and high-resolution spectroscopy.

Roadmap to MaRIE March 2015

DOE Office of Scientific and Technical Information (OSTI.GOV)

Barnes, Cris William

Los Alamos National Laboratory’s proposed MaRIE facility is slated to introduce the world’s highest energy hard x-ray free electron laser (XFEL). As the light source for the Matter-Radiation Interactions in Extremes experimental facility (MaRIE), the 42-keV XFEL, with bursts of x-ray pulses at gigahertz repetition for studying fast dynamical processes, will help accelerate discovery and design of the advanced materials needed to meet 21st-century national security and energy security challenges. Yet the science of free-electron lasers has a long and distinguished history at Los Alamos National Laboratory (LANL), where for nearly four decades Los Alamos scientists have been performing research,more » design, development, and collaboration work in FEL science. The work at Los Alamos has evolved from low-gain amplifier and oscillator FEL development to highbrightness photoinjector development, and later, self-amplified spontaneous emission (SASE) and high-gain amplifier FEL development.« less

Data Exploration Toolkit for serial diffraction experiments

DOE PAGES

Zeldin, Oliver B.; Brewster, Aaron S.; Hattne, Johan; ...

2015-01-23

Ultrafast diffraction at X-ray free-electron lasers (XFELs) has the potential to yield new insights into important biological systems that produce radiation-sensitive crystals. An unavoidable feature of the 'diffraction before destruction' nature of these experiments is that images are obtained from many distinct crystals and/or different regions of the same crystal. Combined with other sources of XFEL shot-to-shot variation, this introduces significant heterogeneity into the diffraction data, complicating processing and interpretation. To enable researchers to get the most from their collected data, a toolkit is presented that provides insights into the quality of, and the variation present in, serial crystallography datamore » sets. These tools operate on the unmerged, partial intensity integration results from many individual crystals, and can be used on two levels: firstly to guide the experimental strategy during data collection, and secondly to help users make informed choices during data processing.« less

Nano-structuring of multi-layer material by single x-ray vortex pulse with femtosecond duration

NASA Astrophysics Data System (ADS)

Kohmura, Yoshiki; Zhakhovsky, Vasily; Takei, Dai; Suzuki, Yoshio; Takeuchi, Akihisa; Inoue, Ichiro; Inubushi, Yuichi; Inogamov, Nail; Ishikawa, Tetsuya; Yabashi, Makina

2018-03-01

A narrow zero-intensity spot arising from an x-ray vortex has huge potential for future applications such as nanoscopy and nanofabrication. We here present an X-ray Free Electron Laser (XFEL) experiment with a focused vortex wavefront which generated high aspect ratio nanoneedles on a Cr/Au multi-layer (ML) specimen. A sharp needle with a typical width and height of 310 and 600 nm was formed with a high occurrence rate at the center of a 7.71 keV x-ray vortex on this ML specimen, respectively. The observed width exceeds the diffraction limit, and the smallest structures ever reported using an intense-XFEL ablation were fabricated. We found that the elemental composition of the nanoneedles shows a significant difference from that of the unaffected area of Cr/Au ML. All these results are well explained by the molecular dynamics simulations, leading to the elucidation of the needle formation mechanism on an ultra-fast timescale.

Cryogenic coherent X-ray diffraction imaging of biological samples at SACLA: a correlative approach with cryo-electron and light microscopy.

PubMed

Takayama, Yuki; Yonekura, Koji

2016-03-01

Coherent X-ray diffraction imaging at cryogenic temperature (cryo-CXDI) allows the analysis of internal structures of unstained, non-crystalline, whole biological samples in micrometre to sub-micrometre dimensions. Targets include cells and cell organelles. This approach involves preparing frozen-hydrated samples under controlled humidity, transferring the samples to a cryo-stage inside a vacuum chamber of a diffractometer, and then exposing the samples to coherent X-rays. Since 2012, cryo-coherent diffraction imaging (CDI) experiments have been carried out with the X-ray free-electron laser (XFEL) at the SPring-8 Ångstrom Compact free-electron LAser (SACLA) facility in Japan. Complementary use of cryo-electron microscopy and/or light microscopy is highly beneficial for both pre-checking samples and studying the integrity or nature of the sample. This article reports the authors' experience in cryo-XFEL-CDI of biological cells and organelles at SACLA, and describes an attempt towards reliable and higher-resolution reconstructions, including signal enhancement with strong scatterers and Patterson-search phasing.

Insights into photosystem II from isomorphous difference Fourier maps of femtosecond X-ray diffraction data and quantum mechanics/molecular mechanics structural models

DOE Office of Scientific and Technical Information (OSTI.GOV)

Wang, Jimin; Askerka, Mikhail; Brudvig, Gary W.

Understanding structure–function relations in photosystem II (PSII) is important for the development of biomimetic photocatalytic systems. X-ray crystallography, computational modeling, and spectroscopy have played central roles in elucidating the structure and function of PSII. Recent breakthroughs in femtosecond X-ray crystallography offer the possibility of collecting diffraction data from the X-ray free electron laser (XFEL) before radiation damage of the sample, thereby overcoming the main challenge of conventional X-ray diffraction methods. However, the interpretation of XFEL data from PSII intermediates is challenging because of the issues regarding data-processing, uncertainty on the precise positions of light oxygen atoms next to heavy metalmore » centers, and different kinetics of the S-state transition in microcrystals compared to solution. Lastly, we summarize recent advances and outstanding challenges in PSII structure–function determination with emphasis on the implementation of quantum mechanics/molecular mechanics techniques combined with isomorphous difference Fourier maps, direct methods, and high-resolution spectroscopy.« less

Fixed target matrix for femtosecond time-resolved and in situ serial micro-crystallography

DOE Office of Scientific and Technical Information (OSTI.GOV)

Mueller, C.; Marx, A.; Epp, S. W.

We present a crystallography chip enabling in situ room temperature crystallography at microfocus synchrotron beamlines and X-ray free-electron laser (X-FEL) sources. Compared to other in situ approaches, we observe extremely low background and high diffraction data quality. The chip design is robust and allows fast and efficient loading of thousands of small crystals. The ability to load a large number of protein crystals, at room temperature and with high efficiency, into prescribed positions enables high throughput automated serial crystallography with microfocus synchrotron beamlines. In addition, we demonstrate the application of this chip for femtosecond time-resolved serial crystallography at the Linacmore » Coherent Light Source (LCLS, Menlo Park, California, USA). As a result, the chip concept enables multiple images to be acquired from each crystal, allowing differential detection of changes in diffraction intensities in order to obtain high signal-to-noise and fully exploit the time resolution capabilities of XFELs.« less

Acoustic Injectors for Drop-On-Demand Serial Femtosecond Crystallography

DOE PAGES

Roessler, Christian G.; Agarwal, Rakhi; Allaire, Marc; ...

2016-03-17

X-ray free-electron lasers (XFELs) provide very intense X-ray pulses suitable for macromolecular crystallography. Each X-ray pulse typically lasts for tens of femtoseconds and the interval between pulses is many orders of magnitude longer. Here we describe two novel acoustic injection systems that use focused sound waves to eject picoliter to nanoliter crystal-containing droplets out of microplates and into the X-ray pulse from which diffraction data are collected. The on-demand droplet delivery is synchronized to the XFEL pulse scheme, resulting in X-ray pulses intersecting up to 88% of the droplets. We tested several types of samples in a range of crystallizationmore » conditions, wherein the overall crystal hit ratio (e.g., fraction of images with observable diffraction patterns) is a function of the microcrystal slurry concentration. Lastly, we report crystal structures from lysozyme, thermolysin, and stachydrine demethylase (Stc2). In addition, samples were screened to demonstrate that these methods can be applied to rare samples« less

Acoustic Injectors for Drop-On-Demand Serial Femtosecond Crystallography

DOE Office of Scientific and Technical Information (OSTI.GOV)

Roessler, Christian G.; Agarwal, Rakhi; Allaire, Marc

X-ray free-electron lasers (XFELs) provide very intense X-ray pulses suitable for macromolecular crystallography. Each X-ray pulse typically lasts for tens of femtoseconds and the interval between pulses is many orders of magnitude longer. Here we describe two novel acoustic injection systems that use focused sound waves to eject picoliter to nanoliter crystal-containing droplets out of microplates and into the X-ray pulse from which diffraction data are collected. The on-demand droplet delivery is synchronized to the XFEL pulse scheme, resulting in X-ray pulses intersecting up to 88% of the droplets. We tested several types of samples in a range of crystallizationmore » conditions, wherein the overall crystal hit ratio (e.g., fraction of images with observable diffraction patterns) is a function of the microcrystal slurry concentration. We report crystal structures from lysozyme, thermolysin, and stachydrine demethylase (Stc2). Additional samples were screened to demonstrate that these methods can be applied to rare samples.« less

Serial femtosecond crystallography of soluble proteins in lipidic cubic phase

DOE Office of Scientific and Technical Information (OSTI.GOV)

Fromme, Raimund; Ishchenko, Andrii; Metz, Markus

Serial femtosecond crystallography (SFX) at X-ray free-electron lasers (XFELs) enables high-resolution protein structure determination using micrometre-sized crystals at room temperature with minimal effects from radiation damage. SFX requires a steady supply of microcrystals intersecting the XFEL beam at random orientations. An LCP–SFX method has recently been introduced in which microcrystals of membrane proteins are grown and delivered for SFX data collection inside a gel-like membrane-mimetic matrix, known as lipidic cubic phase (LCP), using a special LCP microextrusion injector. Here, it is demonstrated that LCP can also be used as a suitable carrier medium for microcrystals of soluble proteins, enabling amore » dramatic reduction in the amount of crystallized protein required for data collection compared with crystals delivered by liquid injectors. High-quality LCP–SFX data sets were collected for two soluble proteins, lysozyme and phycocyanin, using less than 0.1 mg of each protein.« less

Acoustic Injectors for Drop-On-Demand Serial Femtosecond Crystallography

DOE Office of Scientific and Technical Information (OSTI.GOV)

Roessler, Christian G.; Agarwal, Rakhi; Allaire, Marc

X-ray free-electron lasers (XFELs) provide very intense X-ray pulses suitable for macromolecular crystallography. Each X-ray pulse typically lasts for tens of femtoseconds and the interval between pulses is many orders of magnitude longer. Here we describe two novel acoustic injection systems that use focused sound waves to eject picoliter to nanoliter crystal-containing droplets out of microplates and into the X-ray pulse from which diffraction data are collected. The on-demand droplet delivery is synchronized to the XFEL pulse scheme, resulting in X-ray pulses intersecting up to 88% of the droplets. We tested several types of samples in a range of crystallizationmore » conditions, wherein the overall crystal hit ratio (e.g., fraction of images with observable diffraction patterns) is a function of the microcrystal slurry concentration. Lastly, we report crystal structures from lysozyme, thermolysin, and stachydrine demethylase (Stc2). In addition, samples were screened to demonstrate that these methods can be applied to rare samples« less

Fixed target matrix for femtosecond time-resolved and in situ serial micro-crystallography

DOE PAGES

Mueller, C.; Marx, A.; Epp, S. W.; ...

2015-08-18

We present a crystallography chip enabling in situ room temperature crystallography at microfocus synchrotron beamlines and X-ray free-electron laser (X-FEL) sources. Compared to other in situ approaches, we observe extremely low background and high diffraction data quality. The chip design is robust and allows fast and efficient loading of thousands of small crystals. The ability to load a large number of protein crystals, at room temperature and with high efficiency, into prescribed positions enables high throughput automated serial crystallography with microfocus synchrotron beamlines. In addition, we demonstrate the application of this chip for femtosecond time-resolved serial crystallography at the Linacmore » Coherent Light Source (LCLS, Menlo Park, California, USA). As a result, the chip concept enables multiple images to be acquired from each crystal, allowing differential detection of changes in diffraction intensities in order to obtain high signal-to-noise and fully exploit the time resolution capabilities of XFELs.« less

Isolated few-cycle radiation from chirped-pulse compression of a superradiant free-electron laser

DOE PAGES

Huang, Yen -Chieh; Zhang, Zhen; Chen, Chia -Hsiang; ...

2015-08-31

When a short electron bunch traverses an undulator to radiate a wavelength longer than the bunch length, intense superradiance from the electron bunch can quickly deplete the electron’s kinetic energy and lead to generation of an isolated chirped radiation pulse. Here, we develop a theory to describe this novel chirped pulse radiation in a superradiant free-electron laser and show the opportunity to generate isolated few-cycle high-power radiation through chirped-pulse compression after the undulator. The theory is completely characterized by how fast the electron energy is depleted for a given length of an undulator. We further present two design examples atmore » the THz and extreme-ultraviolet wavelengths and numerically generate isolated three- and nine-cycle radiation pulses, respectively.« less

DOE Office of Scientific and Technical Information (OSTI.GOV)

Schmidt, T.; Imhof, A.; Ingold, G.

To vary the polarization vector of an APPLE II undulator continuously from 0 - 180 deg., all four magnet arrays need to be movable. Following the adjustable-phase undulator approach by R. Carr, a 3.4 m long fixed gap undulator for SLS with a gap of 11.6 mm has been constructed. It will be installed in fall 2006. The gap drive is replaced by a pair-wise shift of the magnet arrays to change the energy, while the polarization is changed by shifts of diagonal arrays. The high injection efficiency and standard operation top-up mode at the SLS allows this simplified undulatormore » design. The design as well as the operational aspects will be discussed.« less

Generalized Models for Rock Joint Surface Shapes

PubMed Central

Du, Shigui; Hu, Yunjin; Hu, Xiaofei

2014-01-01

Generalized models of joint surface shapes are the foundation for mechanism studies on the mechanical effects of rock joint surface shapes. Based on extensive field investigations of rock joint surface shapes, generalized models for three level shapes named macroscopic outline, surface undulating shape, and microcosmic roughness were established through statistical analyses of 20,078 rock joint surface profiles. The relative amplitude of profile curves was used as a borderline for the division of different level shapes. The study results show that the macroscopic outline has three basic features such as planar, arc-shaped, and stepped; the surface undulating shape has three basic features such as planar, undulating, and stepped; and the microcosmic roughness has two basic features such as smooth and rough. PMID:25152901

Fish optimize sensing and respiration during undulatory swimming.

PubMed

Akanyeti, O; Thornycroft, P J M; Lauder, G V; Yanagitsuru, Y R; Peterson, A N; Liao, J C

2016-03-24

Previous work in fishes considers undulation as a means of propulsion without addressing how it may affect other functions such as sensing and respiration. Here we show that undulation can optimize propulsion, flow sensing and respiration concurrently without any apparent tradeoffs when head movements are coupled correctly with the movements of the body. This finding challenges a long-held assumption that head movements are simply an unintended consequence of undulation, existing only because of the recoil of an oscillating tail. We use a combination of theoretical, biological and physical experiments to reveal the hydrodynamic mechanisms underlying this concerted optimization. Based on our results we develop a parsimonious control architecture that can be used by both undulatory animals and machines in dynamic environments.

Fish optimize sensing and respiration during undulatory swimming

PubMed Central

Akanyeti, O.; Thornycroft, P. J. M.; Lauder, G. V.; Yanagitsuru, Y. R.; Peterson, A. N.; Liao, J. C.

2016-01-01

Previous work in fishes considers undulation as a means of propulsion without addressing how it may affect other functions such as sensing and respiration. Here we show that undulation can optimize propulsion, flow sensing and respiration concurrently without any apparent tradeoffs when head movements are coupled correctly with the movements of the body. This finding challenges a long-held assumption that head movements are simply an unintended consequence of undulation, existing only because of the recoil of an oscillating tail. We use a combination of theoretical, biological and physical experiments to reveal the hydrodynamic mechanisms underlying this concerted optimization. Based on our results we develop a parsimonious control architecture that can be used by both undulatory animals and machines in dynamic environments. PMID:27009352

Methods for the computation of detailed geoids and their accuracy

NASA Technical Reports Server (NTRS)

Rapp, R. H.; Rummel, R.

1975-01-01

Two methods for the computation of geoid undulations using potential coefficients and 1 deg x 1 deg terrestrial anomaly data are examined. It was found that both methods give the same final result but that one method allows a more simplified error analysis. Specific equations were considered for the effect of the mass of the atmosphere and a cap dependent zero-order undulation term was derived. Although a correction to a gravity anomaly for the effect of the atmosphere is only about -0.87 mgal, this correction causes a fairly large undulation correction that was not considered previously. The accuracy of a geoid undulation computed by these techniques was estimated considering anomaly data errors, potential coefficient errors, and truncation (only a finite set of potential coefficients being used) errors. It was found that an optimum cap size of 20 deg should be used. The geoid and its accuracy were computed in the Geos 3 calibration area using the GEM 6 potential coefficients and 1 deg x 1 deg terrestrial anomaly data. The accuracy of the computed geoid is on the order of plus or minus 2 m with respect to an unknown set of best earth parameter constants.

Expected Performance of the LHC Synchrotron-Light Telescope (BSRT) and Abort-Gap Monitor (BSRA)

DOE Office of Scientific and Technical Information (OSTI.GOV)

Fisher, Alan; /SLAC

2010-06-07

This Report presents calculations of the synchrotron light from proton and lead-ion beams in the LHC at all energies from 0.45 to 7 TeV. It computes the emission from three sources: the uniform-field region of the D3 dipole, the dipole's edge field, and the short undulator just upstream. Light emitted at or near visible wavelengths is assessed for making optical measurements of transverse beam profiles and for monitoring the emptiness of the abort gap in the fill pattern. There is sufficient light for both applications, although both species pass through energy ranges in the ramp with small photon counts. Effectsmore » limiting image resolution are examined, including geometric optics, depth of field, and diffraction. The Report also considers recent suggestions that the undulator, intended to supplement the dipole for low energies, should not be ramped off at high energies and perhaps should not be used at all. We conclude that the undulator is essential at low energy for both species, but that it is possible to leave the undulator on at the cost of some blurring at intermediate energies.« less

A split-beam probe-pump-probe scheme for femtosecond time resolved protein X-ray crystallography

PubMed Central

van Thor, Jasper J.; Madsen, Anders

2015-01-01

In order to exploit the femtosecond pulse duration of X-ray Free-Electron Lasers (XFEL) operating in the hard X-ray regime for ultrafast time-resolved protein crystallography experiments, critical parameters that determine the crystallographic signal-to-noise (I/σI) must be addressed. For single-crystal studies under low absorbed dose conditions, it has been shown that the intrinsic pulse intensity stability as well as mode structure and jitter of this structure, significantly affect the crystallographic signal-to-noise. Here, geometrical parameters are theoretically explored for a three-beam scheme: X-ray probe, optical pump, X-ray probe (or “probe-pump-probe”) which will allow experimental determination of the photo-induced structure factor amplitude differences, ΔF, in a ratiometric manner, thereby internally referencing the intensity noise of the XFEL source. In addition to a non-collinear split-beam geometry which separates un-pumped and pumped diffraction patterns on an area detector, applying an additional convergence angle to both beams by focusing leads to integration over mosaic blocks in the case of well-ordered stationary protein crystals. Ray-tracing X-ray diffraction simulations are performed for an example using photoactive yellow protein crystals in order to explore the geometrical design parameters which would be needed. The specifications for an X-ray split and delay instrument that implements both an offset angle and focused beams are discussed, for implementation of a probe-pump-probe scheme at the European XFEL. We discuss possible extension of single crystal studies to serial femtosecond crystallography, particularly in view of the expected X-ray damage and ablation due to the first probe pulse. PMID:26798786

A split-beam probe-pump-probe scheme for femtosecond time resolved protein X-ray crystallography

DOE Office of Scientific and Technical Information (OSTI.GOV)

van Thor, Jasper J.; Madsen, Anders

In order to exploit the femtosecond pulse duration of X-ray Free-Electron Lasers (XFEL) operating in the hard X-ray regime for ultrafast time-resolved protein crystallography experiments, critical parameters that determine the crystallographic signal-to-noise (I/σI) must be addressed. For single-crystal studies under low absorbed dose conditions, it has been shown that the intrinsic pulse intensity stability as well as mode structure and jitter of this structure, significantly affect the crystallographic signal-to-noise. Here, geometrical parameters are theoretically explored for a three-beam scheme: X-ray probe, optical pump, X-ray probe (or “probe-pump-probe”) which will allow experimental determination of the photo-induced structure factor amplitude differences, ΔF,more » in a ratiometric manner, thereby internally referencing the intensity noise of the XFEL source. In addition to a non-collinear split-beam geometry which separates un-pumped and pumped diffraction patterns on an area detector, applying an additional convergence angle to both beams by focusing leads to integration over mosaic blocks in the case of well-ordered stationary protein crystals. Ray-tracing X-ray diffraction simulations are performed for an example using photoactive yellow protein crystals in order to explore the geometrical design parameters which would be needed. The specifications for an X-ray split and delay instrument that implements both an offset angle and focused beams are discussed, for implementation of a probe-pump-probe scheme at the European XFEL. We discuss possible extension of single crystal studies to serial femtosecond crystallography, particularly in view of the expected X-ray damage and ablation due to the first probe pulse.« less

A split-beam probe-pump-probe scheme for femtosecond time resolved protein X-ray crystallography

DOE PAGES

van Thor, Jasper J.; Madsen, Anders

2015-01-01

In order to exploit the femtosecond pulse duration of X-ray Free-Electron Lasers (XFEL) operating in the hard X-ray regime for ultrafast time-resolved protein crystallography experiments, critical parameters that determine the crystallographic signal-to-noise (I/σI) must be addressed. For single-crystal studies under low absorbed dose conditions, it has been shown that the intrinsic pulse intensity stability as well as mode structure and jitter of this structure, significantly affect the crystallographic signal-to-noise. Here, geometrical parameters are theoretically explored for a three-beam scheme: X-ray probe, optical pump, X-ray probe (or “probe-pump-probe”) which will allow experimental determination of the photo-induced structure factor amplitude differences, ΔF,more » in a ratiometric manner, thereby internally referencing the intensity noise of the XFEL source. In addition to a non-collinear split-beam geometry which separates un-pumped and pumped diffraction patterns on an area detector, applying an additional convergence angle to both beams by focusing leads to integration over mosaic blocks in the case of well-ordered stationary protein crystals. Ray-tracing X-ray diffraction simulations are performed for an example using photoactive yellow protein crystals in order to explore the geometrical design parameters which would be needed. The specifications for an X-ray split and delay instrument that implements both an offset angle and focused beams are discussed, for implementation of a probe-pump-probe scheme at the European XFEL. We discuss possible extension of single crystal studies to serial femtosecond crystallography, particularly in view of the expected X-ray damage and ablation due to the first probe pulse.« less

Impact of viscous boundary layers on the emission of lee-waves

NASA Astrophysics Data System (ADS)

Renaud, Antoine; Venaille, Antoine; Bouchet, Freddy

2017-04-01

Oceans large-scale structures such as jets and vortices can lose their energy into small-scale turbulence. Understanding the physical mechanisms underlying those energy transfers remains a major theoretical challenge. Here we propose an approach that shed new light on the role of bottom topography in this problem. At a linear level, one efficient way of extracting energy and momentum from the mean-flow above topography undulations is the radiation of lee-waves. The generated lee-waves are well described by inviscid theory which gives a prediction for the energy-loss rate at short time [1]. Using a quasi-linear approach we describe the feedback of waves on the mean-flow occurring mostly close to the bottom topography. This can thereafter impact the lee-waves radiation and thus modify the energy-loss rate for the mean-flow. In this work, we consider the Boussinesq equations with periodic boundary conditions in the zonal direction. Taking advantage of this idealized geometry, we apply zonally-symmetric wave-mean interaction theory [2,3]. The novelty of our work is to discuss the crucial role of dissipative effects, such as molecular or turbulent viscosities, together with the importance of the boundary conditions (free-slip vs no-slip). We provide explicite computations in the case of the free evolution of an initially barotropic flow above a sinusoidal topography with free-slip bottom boundary condition. We show how the existence of the boundary layer for the wave-field can enhance the streaming close to the topography. This leads to the emergence of boundary layer for the mean-flow impacting the energy-loss rate through lee-wave emissions. Our results are compared against direct numerical simulations using the MIT general circulation model and are found to be in good agreement. References [1] S.L. Smith, W.R. Young, Conversion of the Barotropic Tide, JPhysOcean 2002 [2] 0. Bühler, Waves and Mean Flows, second edition, Cambridge university press 2014 [3] J

Optimized design and structural mechanics of a single-piece composite helicopter driveshaft

NASA Astrophysics Data System (ADS)

Henry, Todd C.

In rotorcraft driveline design, single-piece composite driveshafts have much potential for reducing driveline mass and complexity over multi-segmented metallic driveshafts. The singlepiece shaft concept is enabled by the relatively high fatigue strain capacity of fiber reinforced polymer composites over metals. Challenges for single-piece driveshaft design lie in addressing the self-heating behavior of the composite due to the material damping, as well as, whirling stability, torsional buckling stability, and composite strength. Increased composite temperature due to self-heating reduces the composite strength and is accounted for in this research. The laminate longitudinal stiffness ( Ex) and strength (Fx) are known to be heavily degraded by fiber undulation, however, both are not well understood in compression. The whirling stability (a function of longitudinal stiffness) and the composite strength are strongly influential in driveshaft optimization, and thus are investigated further through the testing of flat and filament wound composite specimens. The design of single-piece composite driveshafts, however, needs to consider many failure criteria, including hysteresis-induced overheating, whirl stability, torsional buckling stability, and material failure by overstress. The present investigation uses multi-objective optimization to investigate the design space which visually highlights design trades. Design variables included stacking sequence, number of laminas, and number of hanger bearings. The design goals were to minimize weight and maximize the lowest factor of safety by adaptively generating solutions to the multi-objective problem. Several design spaces were investigated by examining the effect of misalignment, ambient temperature, and constant power transmission on the optimized solution. Several materials of interest were modeled using experimentally determined elastic properties and novel temperature-dependent composite strength. Compared to the

Undulating tongue in Wilson's disease

PubMed Central

Nagappa, M; Sinha, S; Saini, JS; Bindu, PS; Taly, AB

2014-01-01

We report an unusual occurrence of involuntary movement involving the tongue in a patient with confirmed Wilson's disease (WD). She manifested with slow, hypophonic speech and dysphagia of 4 months duration, associated with pseudobulbar affect, apathy, drooling and dystonia of upper extremities of 1 month duration. Our patient had an uncommon tongue movement which was arrhythmic. There was no feature to suggest tremor, chorea or dystonia. It might be described as athetoid as there was a writhing quality, but of lesser amplitude. Thus, the phenomenology was uncommon in clinical practice and the surface of the tongue was seen to “ripple” like a liquid surface agitated by an object or breeze. Isolated lingual dyskinesias are rare in WD. It is important to evaluate them for WD, a potentially treatable disorder. PMID:25024581

Yucatan Subsurface Stratigraphy from Geophysical Data, Well Logs and Core Analyses in the Chicxulub Impact Crater and Implications for Target Heterogeneities

NASA Astrophysics Data System (ADS)

Canales, I.; Fucugauchi, J. U.; Perez-Cruz, L. L.; Camargo, A. Z.; Perez-Cruz, G.

2011-12-01

Asymmetries in the geophysical signature of Chicxulub crater are being evaluated to investigate on effects of impact angle and trajectory and pre-existing target structural controls for final crater form. Early studies interpreted asymmetries in the gravity anomaly in the offshore sector to propose oblique either northwest- and northeast-directed trajectories. An oblique impact was correlated to the global ejecta distribution and enhanced environmental disturbance. In contrast, recent studies using marine seismic data and computer modeling have shown that crater asymmetries correlate with pre-existing undulations of the Cretaceous continental shelf, suggesting a structural control of target heterogeneities. Documentation of Yucatan subsurface stratigraphy has been limited by lack of outcrops of pre-Paleogene rocks. The extensive cover of platform carbonate rocks has not been affected by faulting or deformation and with no rivers cutting the carbonates, information comes mainly from the drilling programs and geophysical surveys. Here we revisit the subsurface stratigraphy in the crater area from the well log data and cores retrieved in the drilling projects and marine seismic reflection profiles. Other source of information being exploited comes from the impact breccias, which contain a sampling of disrupted target sequences, including crystalline basement and Mesozoic sediments. We analyze gravity and seismic data from the various exploration surveys, including multiple Pemex profiles in the platform and the Chicxulub experiments. Analyses of well log data and seismic profiles identify contacts for Lower Cretaceous, Cretaceous/Jurassic and K/Pg boundaries. Results show that the Cretaceous continental shelf was shallower on the south and southwest than on the east, with emerged areas in Quintana Roo and Belize. Mesozoic and upper Paleozoic sediments show variable thickness, possibly reflecting the crystalline basement regional structure. Paleozoic and Precambrian

Terahertz radiation source using a high-power industrial electron linear accelerator

NASA Astrophysics Data System (ADS)

Kalkal, Yashvir; Kumar, Vinit

2017-04-01

High-power (˜ 100 kW) industrial electron linear accelerators (linacs) are used for irradiations, e.g., for pasteurization of food products, disinfection of medical waste, etc. We propose that high-power electron beam from such an industrial linac can first pass through an undulator to generate useful terahertz (THz) radiation, and the spent electron beam coming out of the undulator can still be used for the intended industrial applications. This will enhance the utilization of a high-power industrial linac. We have performed calculation of spontaneous emission in the undulator to show that for typical parameters, continuous terahertz radiation having power of the order of μW can be produced, which may be useful for many scientific applications such as multispectral imaging of biological samples, chemical samples etc.

Swimming at low Reynolds number: a beginners guide to undulatory locomotion

NASA Astrophysics Data System (ADS)

Cohen, Netta; Boyle, Jordan H.

2010-03-01

Undulatory locomotion is a means of self-propulsion that relies on the generation and propagation of waves along a body. As a mode of locomotion it is primitive and relatively simple, yet can be remarkably robust. No wonder then, that it is so prevalent across a range of biological scales from motile bacteria to gigantic prehistoric snakes. Key to understanding undulatory locomotion is the body's interplay with the physical environment, which the swimmer or crawler will exploit to generate propulsion, and in some cases, even to generate the underlying undulations. This review focuses by and large on undulators in the low Reynolds number regime, where the physics of the environment can be much more tractable. We review some key concepts and theoretical advances, as well as simulation tools and results applied to selected examples of biological swimmers. In particular, we extend the discussion to some simple cases of locomotion in non-Newtonian media as well as to small animals, in which the nervous system, motor control, body properties and the environment must all be considered to understand how undulations are generated and modulated. To conclude, we review recent progress in microrobotic undulators that may one day become commonplace in applications ranging from toxic waste disposal to minimally invasive surgery.

Modeling and estimation of a low degree geopotential model from terrestrial gravity data

NASA Technical Reports Server (NTRS)

Pavlis, Nikolaos K.

1988-01-01

The development of appropriate modeling and adjustment procedures for the estimation of harmonic coefficients of the geopotential, from surface gravity data was studied, in order to provide an optimum way of utilizing the terrestrial gravity information in combination solutions currently developed at NASA/Goddard Space Flight Center, for use in the TOPEX/POSEIDON mission. The mathematical modeling was based on the fundamental boundary condition of the linearized Molodensky boundary value problem. Atmospheric and ellipsoidal corrections were applied to the surface anomalies. Terrestrial gravity solutions were found to be in good agreement with the satellite ones over areas which are well surveyed (gravimetrically), such as North America or Australia. However, systematic differences between the terrestrial only models and GEMT1, over extended regions in Africa, the Soviet Union, and China were found. In Africa, gravity anomaly differences on the order of 20 mgals and undulation differences on the order of 15 meters, over regions extending 2000 km in diameter, occur. Comparisons of the GEMT1 implied undulations with 32 well distributed Doppler derived undulations gave an RMS difference of 2.6 m, while corresponding comparison with undulations implied by the terrestrial solution gave RMS difference on the order of 15 m, which implies that the terrestrial data in that region are substantially in error.

Insertion device calculations with mathematica

DOE Office of Scientific and Technical Information (OSTI.GOV)

Carr, R.; Lidia, S.

1995-02-01

The design of accelerator insertion devices such as wigglers and undulators has usually been aided by numerical modeling on digital computers, using code in high level languages like Fortran. In the present era, there are higher level programming environments like IDL{reg_sign}, MatLab{reg_sign}, and Mathematica{reg_sign} in which these calculations may be performed by writing much less code, and in which standard mathematical techniques are very easily used. The authors present a suite of standard insertion device modeling routines in Mathematica to illustrate the new techniques. These routines include a simple way to generate magnetic fields using blocks of CSEM materials, trajectorymore » solutions from the Lorentz force equations for given magnetic fields, Bessel function calculations of radiation for wigglers and undulators and general radiation calculations for undulators.« less

A high-transparency, micro-patternable chip for X-ray diffraction analysis of microcrystals under native growth conditions

DOE Office of Scientific and Technical Information (OSTI.GOV)

Murray, Thomas D.; Johns Hopkins University School of Medicine, Baltimore, MD 21205; Lyubimov, Artem Y.

A highly X-ray-transparent, silicon nitride-based device has been designed and fabricated to harvest protein microcrystals for high-resolution X-ray diffraction data collection using microfocus beamlines and XFELs. Microcrystals present a significant impediment to the determination of macromolecular structures by X-ray diffraction methods. Although microfocus synchrotron beamlines and X-ray free-electron lasers (XFELs) can enable the collection of interpretable diffraction data from microcrystals, there is a need for efficient methods of harvesting small volumes (<2 µl) of microcrystals grown under common laboratory formats and delivering them to an X-ray beam source under native growth conditions. One approach that shows promise in overcoming themore » challenges intrinsic to microcrystal analysis is to pair so-called ‘fixed-target’ sample-delivery devices with microbeam-based X-ray diffraction methods. However, to record weak diffraction patterns it is necessary to fabricate devices from X-ray-transparent materials that minimize background scattering. Presented here is the design of a new micro-diffraction device consisting of three layers fabricated from silicon nitride, photoresist and polyimide film. The chip features low X-ray scattering and X-ray absorption properties, and uses a customizable blend of hydrophobic and hydrophilic surface patterns to help localize microcrystals to defined regions. Microcrystals in their native growth conditions can be loaded into the chips with a standard pipette, allowing data collection at room temperature. Diffraction data collected from hen egg-white lysozyme microcrystals (10–15 µm) loaded into the chips yielded a complete, high-resolution (<1.6 Å) data set sufficient to determine a high-quality structure by molecular replacement. The features of the chip allow the rapid and user-friendly analysis of microcrystals grown under virtually any laboratory format at microfocus synchrotron beamlines and XFELs.« less

Coherent X-Ray Diffraction Imaging of Chloroplasts from Cyanidioschyzon merolae by Using X-Ray Free Electron Laser.

PubMed

Takayama, Yuki; Inui, Yayoi; Sekiguchi, Yuki; Kobayashi, Amane; Oroguchi, Tomotaka; Yamamoto, Masaki; Matsunaga, Sachihiro; Nakasako, Masayoshi

2015-07-01

Coherent X-ray diffraction imaging (CXDI) is a lens-less technique for visualizing the structures of non-crystalline particles with the dimensions of submicrometer to micrometer at a resolution of several tens of nanometers. We conducted cryogenic CXDI experiments at 66 K to visualize the internal structures of frozen-hydrated chloroplasts of Cyanidioschyzon merolae using X-ray free electron laser (XFEL) as a coherent X-ray source. Chloroplast dispersed specimen disks at a number density of 7/(10×10 µm(2)) were flash-cooled with liquid ethane without staining, sectioning or chemical labeling. Chloroplasts are destroyed at atomic level immediately after the diffraction by XFEL pulses. Thus, diffraction patterns with a good signal-to-noise ratio from single chloroplasts were selected from many diffraction patterns collected through scanning specimen disks to provide fresh specimens into the irradiation area. The electron density maps of single chloroplasts projected along the direction of the incident X-ray beam were reconstructed by using the iterative phase-retrieval method and multivariate analyses. The electron density map at a resolution of 70 nm appeared as a C-shape. In addition, the fluorescence image of proteins stained with Flamingo™ dye also appeared as a C-shape as did the autofluorescence from Chl. The similar images suggest that the thylakoid membranes with an abundance of proteins distribute along the outer membranes of chloroplasts. To confirm the present results statistically, a number of projection structures must be accumulated through high-throughput data collection in the near future. Based on the results, we discuss the feasibility of XFEL-CXDI experiments in the structural analyses of cellular organelles. © The Author 2015. Published by Oxford University Press on behalf of Japanese Society of Plant Physiologists. All rights reserved. For permissions, please email: journals.permissions@oup.com.

Preparation and Delivery of Protein Microcrystals in Lipidic Cubic Phase for Serial Femtosecond Crystallography.

PubMed

Ishchenko, Andrii; Cherezov, Vadim; Liu, Wei

2016-09-20

Membrane proteins (MPs) are essential components of cellular membranes and primary drug targets. Rational drug design relies on precise structural information, typically obtained by crystallography; however MPs are difficult to crystallize. Recent progress in MP structural determination has benefited greatly from the development of lipidic cubic phase (LCP) crystallization methods, which typically yield well-diffracting, but often small crystals that suffer from radiation damage during traditional crystallographic data collection at synchrotron sources. The development of new-generation X-ray free-electron laser (XFEL) sources that produce extremely bright femtosecond pulses has enabled room temperature data collection from microcrystals with no or negligible radiation damage. Our recent efforts in combining LCP technology with serial femtosecond crystallography (LCP-SFX) have resulted in high-resolution structures of several human G protein-coupled receptors, which represent a notoriously difficult target for structure determination. In the LCP-SFX technique, LCP is recruited as a matrix for both growth and delivery of MP microcrystals to the intersection of the injector stream with an XFEL beam for crystallographic data collection. It has been demonstrated that LCP-SFX can substantially improve the diffraction resolution when only sub-10 µm crystals are available, or when the use of smaller crystals at room temperature can overcome various problems associated with larger cryocooled crystals, such as accumulation of defects, high mosaicity and cryocooling artifacts. Future advancements in X-ray sources and detector technologies should make serial crystallography highly attractive and practicable for implementation not only at XFELs, but also at more accessible synchrotron beamlines. Here we present detailed visual protocols for the preparation, characterization and delivery of microcrystals in LCP for serial crystallography experiments. These protocols include

Bragg Coherent Diffractive Imaging of Zinc Oxide Acoustic Phonons at Picosecond Timescales

DOE PAGES

Ulvestad, A.; Cherukara, M. J.; Harder, R.; ...

2017-08-29

Mesoscale thermal transport is of fundamental interest and practical importance in materials such as thermoelectrics. Coherent lattice vibrations (acoustic phonons) govern thermal transport in crystalline solids and are affected by the shape, size, and defect density in nanoscale materials. The advent of hard x-ray free electron lasers (XFELs) capable of producing ultrafast x-ray pulses has significantly impacted the understanding of acoustic phonons by enabling their direct study with x-rays. However, previous studies have reported ensemble-averaged results that cannot distinguish the impact of mesoscale heterogeneity on the phonon dynamics. Here we use Bragg coherent diffractive imaging (BCDI) to resolve the 4Dmore » evolution of the acoustic phonons in a single zinc oxide rod with a spatial resolution of 50 nm and a temporal resolution of 25 picoseconds. We observe homogeneous (lattice breathing/rotation) and inhomogeneous (shear) acoustic phonon modes, which are compared to finite element simulations. We investigate the possibility of changing phonon dynamics by altering the crystal through acid etching. Lastly, we find that the acid heterogeneously dissolves the crystal volume, which will significantly impact the phonon dynamics. In general, our results represent the first step towards understanding the effect of structural properties at the individual crystal level on phonon dynamics.« less

Bragg Coherent Diffractive Imaging of Zinc Oxide Acoustic Phonons at Picosecond Timescales

DOE Office of Scientific and Technical Information (OSTI.GOV)

Ulvestad, A.; Cherukara, M. J.; Harder, R.

Mesoscale thermal transport is of fundamental interest and practical importance in materials such as thermoelectrics. Coherent lattice vibrations (acoustic phonons) govern thermal transport in crystalline solids and are affected by the shape, size, and defect density in nanoscale materials. The advent of hard x-ray free electron lasers (XFELs) capable of producing ultrafast x-ray pulses has significantly impacted the understanding of acoustic phonons by enabling their direct study with x-rays. However, previous studies have reported ensemble-averaged results that cannot distinguish the impact of mesoscale heterogeneity on the phonon dynamics. Here we use Bragg coherent diffractive imaging (BCDI) to resolve the 4Dmore » evolution of the acoustic phonons in a single zinc oxide rod with a spatial resolution of 50 nm and a temporal resolution of 25 picoseconds. We observe homogeneous (lattice breathing/rotation) and inhomogeneous (shear) acoustic phonon modes, which are compared to finite element simulations. We investigate the possibility of changing phonon dynamics by altering the crystal through acid etching. Lastly, we find that the acid heterogeneously dissolves the crystal volume, which will significantly impact the phonon dynamics. In general, our results represent the first step towards understanding the effect of structural properties at the individual crystal level on phonon dynamics.« less

Structural biology at the European X-ray free-electron laser facility

PubMed Central

Altarelli, Massimo; Mancuso, Adrian P.

2014-01-01

The European X-ray free-electron laser (XFEL) facility, under construction in the Hamburg region, will provide high-peak brilliance (greater than 1033 photons s−1 mm−2 mrad−2 per 0.1% BW), ultrashort pulses (approx. 10 fs) of X-rays, with a high repetition rate (up to 27 000 pulses s−1) from 2016 onwards. The main features of this exceptional X-ray source, and the instrumentation developments necessary to exploit them fully, for application to a variety of scientific disciplines, are briefly summarized. In the case of structural biology, that has a central role in the scientific case of this new facility, the instruments and ancillary laboratories that are being planned and built within the baseline programme of the European XFEL and by consortia of users are also discussed. It is expected that the unique features of the source and the advanced features of the instrumentation will allow operation modes with more efficient use of sample materials, faster acquisition times, and conditions better approaching feasibility of single molecule imaging. PMID:24914145

DOE Office of Scientific and Technical Information (OSTI.GOV)

Nilsson, A.; LaRue, J.; Öberg, H.

Here, we describe how the unique temporal and spectral characteristics of X-ray free-electron lasers (XFEL) can be utilized to follow chemical transformations in heterogeneous catalysis in real time. We highlight the systematic study of CO oxidation on Ru(0 0 0 1), which we initiate either using a femtosecond pulse from an optical laser or by activating only the oxygen atoms using a THz pulse. We find that CO is promoted into an entropy-controlled precursor state prior to desorbing when the surface is heated in the absence of oxygen, whereas in the presence of oxygen, CO desorbs directly into the gasmore » phase. We monitor the activation of atomic oxygen explicitly by the reduced split between bonding and antibonding orbitals as the oxygen comes out of the strongly bound hollow position. Applying these novel XFEL techniques to the full oxidation reaction resulted in the surprising observation of a significant fraction of the reactants at the transition state through the electronic signature of the new bond formation.« less

Experimental demonstration of fresh bunch self-seeding in an X-ray free electron laser

DOE PAGES

Emma, C.; Lutman, A.; Guetg, M. W.; ...

2017-04-10

Here, we report the generation of ultrahigh brightness X-ray pulses using the Fresh Bunch Self-Seeding (FBSS) method in an X-ray Free Electron Laser (XFEL). The FBSS method uses two different electron slices or bunches, one to generate the seed and the other to amplify it after the monochromator. This method circumvents the trade-off between the seed power and electron slice energy spread, which limits the efficiency of regular self-seeded FELs. The experiment, the performance of which is limited by existing hardware, shows FBSS feasibility, generating 5.5 keV photon pulses which are 9 fs long and of 7.3 ×10 –5 bandwidthmore » and 50 GW power. FBSS performance is compared with Self Amplified Spontaneous Emission/self-seeding performance, measuring a brightness increase of twelve/two times, respectively. In an optimized XFEL, FBSS can increase the peak power a hundred times more than state-of-the-art to multi-TW, opening new research areas for nonlinear science and single molecule imaging.« less

Ceramic micro-injection molded nozzles for serial femtosecond crystallography sample delivery

NASA Astrophysics Data System (ADS)

Beyerlein, K. R.; Adriano, L.; Heymann, M.; Kirian, R.; Knoška, J.; Wilde, F.; Chapman, H. N.; Bajt, S.

2015-12-01

Serial femtosecond crystallography (SFX) using X-ray Free-Electron Lasers (XFELs) allows for room temperature protein structure determination without evidence of conventional radiation damage. In this method, a liquid suspension of protein microcrystals can be delivered to the X-ray beam in vacuum as a micro-jet, which replenishes the crystals at a rate that exceeds the current XFEL pulse repetition rate. Gas dynamic virtual nozzles produce the required micrometer-sized streams by the focusing action of a coaxial sheath gas and have been shown to be effective for SFX experiments. Here, we describe the design and characterization of such nozzles assembled from ceramic micro-injection molded outer gas-focusing capillaries. Trends of the emitted jet diameter and jet length as a function of supplied liquid and gas flow rates are measured by a fast imaging system. The observed trends are explained by derived relationships considering choked gas flow and liquid flow conservation. Finally, the performance of these nozzles in a SFX experiment is presented, including an analysis of the observed background.

High-intensity double-pulse X-ray free-electron laser

DOE PAGES

Marinelli, A.; Ratner, D.; Lutman, A. A.; ...

2015-03-06

The X-ray free-electron laser has opened a new era for photon science, improving the X-ray brightness by ten orders of magnitude over previously available sources. Similar to an optical laser, the spectral and temporal structure of the radiation pulses can be tailored to the specific needs of many experiments by accurately manipulating the lasing medium, that is, the electron beam. Here we report the generation of mJ-level two-colour hard X-ray pulses of few femtoseconds duration with an XFEL driven by twin electron bunches at the Linac Coherent Light Source. This performance represents an improvement of over an order of magnitudemore » in peak power over state-of-the-art two-colour XFELs. The unprecedented intensity and temporal coherence of this new two-colour X-ray free-electron laser enable an entirely new set of scientific applications, ranging from X-ray pump/X-ray probe experiments to the imaging of complex biological samples with multiple wavelength anomalous dispersion.« less

Catalysis in real time using x-ray lasers

DOE PAGES

Nilsson, A.; LaRue, J.; Öberg, H.; ...

2017-02-14

Here, we describe how the unique temporal and spectral characteristics of X-ray free-electron lasers (XFEL) can be utilized to follow chemical transformations in heterogeneous catalysis in real time. We highlight the systematic study of CO oxidation on Ru(0 0 0 1), which we initiate either using a femtosecond pulse from an optical laser or by activating only the oxygen atoms using a THz pulse. We find that CO is promoted into an entropy-controlled precursor state prior to desorbing when the surface is heated in the absence of oxygen, whereas in the presence of oxygen, CO desorbs directly into the gasmore » phase. We monitor the activation of atomic oxygen explicitly by the reduced split between bonding and antibonding orbitals as the oxygen comes out of the strongly bound hollow position. Applying these novel XFEL techniques to the full oxidation reaction resulted in the surprising observation of a significant fraction of the reactants at the transition state through the electronic signature of the new bond formation.« less

Free-electron-laser coherent diffraction images of individual drug-carrying liposome particles in solution.

PubMed

Huang, Chi-Feng; Liang, Keng S; Hsu, Tsui-Ling; Lee, Tsung-Tse; Chen, Yi-Yun; Yang, Shun-Min; Chen, Hsiang-Hsin; Huang, Shih-Hsin; Chang, Wei-Hau; Lee, Ting-Kuo; Chen, Peilin; Peng, Kuei-En; Chen, Chien-Chun; Shi, Cheng-Zhi; Hu, Yu-Fang; Margaritondo, Giorgio; Ishikawa, Tetsuya; Wong, Chi-Huey; Hwu, Y

2018-02-08

Using the excellent performances of a SACLA (RIKEN/HARIMA, Japan) X-ray free electron laser (X-FEL), coherent diffraction imaging (CDI) was used to detect individual liposome particles in water, with or without inserted doxorubicin nanorods. This was possible because of the electron density differences between the carrier, the liposome, and the drug. The result is important since liposome nanocarriers at present dominate drug delivery systems. In spite of the low cross-section of the original ingredients, the diffracted intensity of drug-free liposomes was sufficient for spatial reconstruction yielding quantitative structural information. For particles containing doxorubicin, the structural parameters of the nanorods could be extracted from CDI. Furthermore, the measurement of the electron density of the solution enclosed in each liposome provides direct evidence of the incorporation of ammonium sulphate into the nanorods. Overall, ours is an important test for extending the X-FEL analysis of individual nanoparticles to low cross-sectional systems in solution, and also for its potential use to optimize the manufacturing of drug nanocarriers.

Three-dimensional-printed gas dynamic virtual nozzles for x-ray laser sample delivery

PubMed Central

Nelson, Garrett; Kirian, Richard A.; Weierstall, Uwe; Zatsepin, Nadia A.; Faragó, Tomáš; Baumbach, Tilo; Wilde, Fabian; Niesler, Fabian B. P.; Zimmer, Benjamin; Ishigami, Izumi; Hikita, Masahide; Bajt, Saša; Yeh, Syun-Ru; Rousseau, Denis L.; Chapman, Henry N.; Spence, John C. H.; Heymann, Michael

2016-01-01

Reliable sample delivery is essential to biological imaging using X-ray Free Electron Lasers (XFELs). Continuous injection using the Gas Dynamic Virtual Nozzle (GDVN) has proven valuable, particularly for time-resolved studies. However, many important aspects of GDVN functionality have yet to be thoroughly understood and/or refined due to fabrication limitations. We report the application of 2-photon polymerization as a form of high-resolution 3D printing to fabricate high-fidelity GDVNs with submicron resolution. This technique allows rapid prototyping of a wide range of different types of nozzles from standard CAD drawings and optimization of crucial dimensions for optimal performance. Three nozzles were tested with pure water to determine general nozzle performance and reproducibility, with nearly reproducible off-axis jetting being the result. X-ray tomography and index matching were successfully used to evaluate the interior nozzle structures and identify the cause of off-axis jetting. Subsequent refinements to fabrication resulted in straight jetting. A performance test of printed nozzles at an XFEL provided high quality femtosecond diffraction patterns. PMID:27410079

Ceramic micro-injection molded nozzles for serial femtosecond crystallography sample delivery

DOE Office of Scientific and Technical Information (OSTI.GOV)

Beyerlein, K. R.; Adriano, L.; Heymann, M.

Serial femtosecond crystallography (SFX) using X-ray Free-Electron Lasers (XFELs) allows for room temperature protein structure determination without evidence of conventional radiation damage. In this method, a liquid suspension of protein microcrystals can be delivered to the X-ray beam in vacuum as a micro-jet, which replenishes the crystals at a rate that exceeds the current XFEL pulse repetition rate. Gas dynamic virtual nozzles produce the required micrometer-sized streams by the focusing action of a coaxial sheath gas and have been shown to be effective for SFX experiments. Here, we describe the design and characterization of such nozzles assembled from ceramic micro-injectionmore » molded outer gas-focusing capillaries. Trends of the emitted jet diameter and jet length as a function of supplied liquid and gas flow rates are measured by a fast imaging system. The observed trends are explained by derived relationships considering choked gas flow and liquidflow conservation. In conclusion, the performance of these nozzles in a SFX experiment is presented, including an analysis of the observed background.« less