Tributyltin exposure causes brain damage in Sebastiscus marmoratus.

PubMed

Zhang, Jiliang; Zuo, Zhenghong; Chen, Rong; Chen, Yixin; Wang, Chonggang

2008-09-01

Tributyltin (TBT) is a ubiquitous marine environmental contaminant characterized primarily by its reproductive toxicity. However, the neurotoxic effect of TBT has not been extensively described, especially in fishes which have a high number of species in the marine environment. This study was conducted to investigate the neurotoxic effects of TBT at environmental levels (1, 10, and 100ngl(-1)) on female Sebastiscus marmoratus. The results showed that TBT exposure induced apoptosis in brain cells of three regions including the pallial areas of the telencephalon, the granular layer of the optic tectum, and the cerebellum. In addition, the increase of reactive oxygen species and nitric oxide levels, and the decrease of Na+/K+-ATPase activity were found in the brain. The results strongly indicated neurotoxicity of TBT to fishes. According to the regions in which apoptosis was found in the brain, TBT exposure might influence the schooling, sensory and motorial functions of fishes.

Evolution and Conservation on Top of the World: Phylogeography of the Marbled Water Frog (Telmatobius marmoratus Species Complex; Anura, Telmatobiidae) in Protected Areas of Chile.

PubMed

Victoriano, Pedro F; Muñoz-Mendoza, Carla; Sáez, Paola A; Salinas, Hugo F; Muñoz-Ramírez, Carlos; Sallaberry, Michel; Fibla, Pablo; Méndez, Marco A

2015-01-01

The Andean Altiplano has served as a complex setting throughout its history, driving dynamic processes of diversification in several taxa. We investigated phylogeographic processes in the Telmatobius marmoratus species complex occurring in this region by studying the geographic patterns of genetic variability, genealogies, and historical migration, using the cytochrome b (cyt-b) gene as a marker. DNA sequences from Telmatobius gigas and Telmatobius culeus, Bolivian species with an uncertain taxonomic status, were also included. Additionally, we evaluated the phylogenetic diversity (PD) represented within Chilean protected areas and the complementary contribution from unprotected populations. Phylogenetic reconstructions from 148 cyt-b sequences revealed 4 main clades, one of which corresponded to T. culeus. T. gigas was part of T. marmoratus clade indicating paraphyletic relationships. Haplotypes from Chilean and Bolivian sites were not reciprocally monophyletic. Geographic distribution of lineages, spatial Bayesian analysis, and migration patterns indicated that T. marmoratus displays a weaker geographic structure than expected based on habitat distribution and physiological requirements. Demographic and statistical phylogeography analyses pointed out to a scenario of recent population expansion and high connectivity events of a more recent age than the post Last Glacial Maximum, probably associated to more humid events in Altiplano. PD of T. marmoratus populations within protected areas represents 55.6% of the total estimated PD. The unprotected populations that would contribute the most to PD are Caquena and Quebe (21%). Recent evolutionary processes and paleoclimatic changes, potentially driving shifts in habitat connectivity levels and population sizes, could explain the phylogeographic patterns recovered herein. © The American Genetic Association 2015. All rights reserved. For permissions, please e-mail: journals.permissions@oup.com.

Population genetic structure and conservation of marbled murrelets (Brachyramphus marmoratus)

USGS Publications Warehouse

Friesen, Vicki L.; Birt, T.P.; Piatt, John F.; Golightly, R.T.; Newman, S.H.; Hebert, P.N.; Congdon, B.C.; Gissing, G.

2005-01-01

Marbled murrelets (Brachyramphus marmoratus) are coastal seabirds that nest from California to the Aleutian Islands. They are declining and considered threatened in several regions. We compared variation in the mitochondrial control region, four nuclear introns and three microsatellite loci among 194 murrelets from throughout their range except Washington and Oregon. Significant population genetic structure was found: nine private control region haplotypes and three private intron alleles occurred at high frequency in the Aleutians and California; global estimates of FST or ??ST and most pairwise estimates involving the Aleutians and/or California were significant; and marked isolation-by-distance was found. Given the available samples, murrelets appear to comprise five genetic management units: (1) western Aleutian Islands, (2) central Aleutian Islands, (3) mainland Alaska and British Columbia, (4) northern California, and (5) central California.

Transient effects of methyltestosterone injection on different reproductive parameters of the hermaphrodite fish Kryptolebias marmoratus.

PubMed

Park, Chang-Beom; Soyano, Kiyoshi; Kiros, Solomon; Kitamura, Tomokazu; Minamiyama, Mizuhiko; Suzuki, Yutaka

2013-09-01

To elucidate the action mechanism of environmental androgenic chemicals on fish reproductive activity by transient stimulation in heavily polluted areas, individuals of the hermaphrodite fish Kryptolebias marmoratus were injected once with six concentrations of methyltestosterone (MT) (0.1, 1, 5, 10, 50, and 100 μg/g BW) intraperitoneally. The fish were sampled at intervals of 7, 15, and 30 days after a single injection. At 7 days after injection, mature oocytes were not observed in the MT-exposed groups except for the group exposed to 0.1 μg MT, while testicular development was not remarkably different between any of the groups. Also, at 7 days after injection, hepatic estrogen receptor α (ERα) and vitellogenin (VTG) mRNA abundance decreased significantly in the MT-exposed groups despite no significant difference in plasma 17β-estradiol (E2) levels between any of the groups. This significant difference in VTG mRNA between the control and the MT-exposed groups persisted until 30 days after injection, although ERα mRNA abundance was not statistically different between any groups at 30 days after injection. Our results clearly show that a single injection of MT inhibits ovarian development rather than testicular development in the hermaphroditic gonad of K. marmoratus. Furthermore, our results demonstrate that a single injection of MT interfered with hepatic VTG mRNA synthesis mediated by the suppression of hepatic ERα mRNA transcription.

A Simultaneous Genetic Screen for Zygotic and Sterile Mutants in a Hermaphroditic Vertebrate (Kryptolebias marmoratus)

PubMed Central

Sucar, Sofia; Moore, Ginger L.; Ard, Melissa E.; Ring, Brian C.

2016-01-01

The mangrove killifish, Kryptolebias marmoratus, is unique among vertebrates due to its self-fertilizing mode of reproduction involving an ovotestis. As a result, it constitutes a simplistic and desirable vertebrate model for developmental genetics as it is easily maintained, reaches sexual maturity in about 100 days, and provides a manageable number of relatively clear embryos. After the establishment and characterization of an initial mutagenesis pilot screen using N-ethyl-N-nitrosourea, a three-generation genetic screen was performed to confirm zygotic mutant allele heritability and simultaneously score for homozygous recessive mutant sterile F2 fish. From a total of 307 F2 fish screened, 10 were found to be 1° males, 16 were sterile, 92 wild-type, and the remaining 189, carriers of zygotic recessive alleles. These carriers produced 25% progeny exhibiting several zygotic phenotypes similar to those previously described in zebrafish and in the aforementioned pilot screen, as expected. Interestingly, new phenotypes such as golden yolk, no trunk, and short tail were observed. The siblings of sterile F2 mutants were used to produce an F3 generation in order to confirm familial sterility. Out of the 284 F3 fish belonging to 10 previously identified sterile families, 12 were found to be 1° males, 69 were wild-type, 83 sterile, and 120 were classified as */+ (either wild-type or carriers) with undefined genotypes. This screen provides proof of principle that K. marmoratus is a powerful vertebrate model for developmental genetics and can be used to identify mutations affecting fertility. PMID:26801648

Plasticity of skin water permeability and skin thickness in the amphibious mangrove rivulus Kryptolebias marmoratus.

PubMed

Heffell, Quentin; Turko, Andy J; Wright, Patricia A

2018-03-01

The skin of amphibious fishes is a multipurpose organ, important for gas and ion exchange and nitrogen excretion when fish are out of water (emersed). We tested the hypothesis that skin permeability is altered to maintain water balance through changes in water permeability and skin thickness during salinity acclimation and/or when fish emerse, using the euryhaline, amphibious fish Kryptolebias marmoratus as a model. We first recorded the behaviour of fish out of water to determine which part of the cutaneous surface was in contact with the substrate. Fish spent about 70% of their time on their ventral surface when out of water. Osmotic permeability of the skin was assessed in fish acclimated to 0.3 or 45‰ using 3 H 2 O fluxes in an in vitro micro-Ussing chamber setup. In freshwater-acclimated fish, 3 H 2 O influx across the skin was significantly higher compared to hypersaline-acclimated fish, with no significant changes in efflux. Prolonged emersion (7 days) resulted in an increase in skin 3 H 2 O influx, but not efflux in fish acclimated to a moist 45‰ substrate. In a separate experiment, dorsal epidermal skin thickness increased while the ventral dermis thickness decreased in fish emersed for over a week. However, there was no link between regional skin thickness and water flux in our experiments. Taken together, these findings suggest that K. marmoratus alter skin permeability to maximize water uptake while emersed in hypersaline conditions, adjustments that probably help them survive months of emersion during the dry season when drinking to replace water loss is not possible.

Emersion behaviour underlies variation in gill morphology and aquatic respiratory function in the amphibious fish Kryptolebias marmoratus.

PubMed

Turko, A J; Tatarenkov, A; Currie, S; Earley, R L; Platek, A; Taylor, D S; Wright, P A

2018-04-13

Fishes acclimated to hypoxic environments often increase gill surface area to improve O 2 uptake. In some species, surface area is increased via reduction of an interlamellar cell mass (ILCM) that fills water channels between gill lamellae. Amphibious fishes, however, may not increase gill surface area in hypoxic water because these species can, instead, leave water and breathe air. To differentiate between these possibilities, we compared wild amphibious mangrove rivulus Kryptolebias marmoratus from two habitats that varied in O 2 availability - a hypoxic freshwater pool versus nearly anoxic crab burrows. Fish captured from crab burrows had less gill surface area (as ILCMs were enlarged by ∼32%), increased rates of normoxic O 2 consumption and increased critical O 2 tension compared with fish from the freshwater pool. Thus, wild mangrove rivulus do not respond to near-anoxic water by decreasing metabolism or increasing O 2 extraction. Instead, fish from the crab burrow habitat spent three times longer out of water, which probably caused the observed changes in gill morphology and respiratory phenotype. We also tested whether critical O 2 tension is influenced by genetic heterozygosity, as K. marmoratus is one of only two hermaphroditic vertebrate species that can produce both self-fertilized (inbred) or out-crossed (more heterozygous) offspring. We found no evidence for inbreeding depression, suggesting that self-fertilization does not impair respiratory function. Overall, our results demonstrate that amphibious fishes that inhabit hypoxic aquatic habitats can use a fundamentally different strategy from that used by fully aquatic water-breathing fishes, relying on escape behaviour rather than metabolic depression or increased O 2 extraction ability. © 2018. Published by The Company of Biologists Ltd.

Influence of dietary n-3 LC-PUFA on growth, nutritional composition and immune function in marine fish Sebastiscus marmoratus

NASA Astrophysics Data System (ADS)

Peng, Shiming; Yue, Yanfeng; Gao, Quanxin; Shi, Zhaohong; Yin, Fei; Wang, Jiangang

2014-09-01

A 60-day feeding experiment was conducted to investigate the influence of dietary omega-3 long-chain polyunsaturated fatty acids (n-3 LC-PUFA) on growth, nutritional composition and immune function of marine fish Sebastiscus marmoratus. Five diets containing 3.6, 10.2, 18.2, 26.5, or 37.0 g/kg n-3 LC-PUFA were prepared. The results reveal significant influences of dietary n-3 LC-PUFA on the final weight, weight gain, specific growth rate, feed conversion ratio, and condition factor. As dietary n-3 LCPUFA increased, weight gain and specific growth rate increased and were significantly higher in groups fed 18.2, 26.5 and 37.0 g/kg than in groups fed 3.6 and 10.2 g/kg ( P<0.05); there was no significant difference between groups fed 18.2, 26.5, or 37.0 g/kg ( P>0.05). With increasing dietary n-3 LC-PUFA, eicosapentaenoic acid and docosahexenoic acid content in muscle and liver increased significantly, immunoglobulin class M content gradually increased from 9.1 to 14.8 μg/L, and lysozyme activity content increased from 1 355 to 2 268 U/mL. Broken line model analysis according to weight gain indicated that a dietary n-3 LC-PUFA level of 18.2 g/kg is essential for normal growth at a fat level of 125 g/kg. Therefore, appropriate dietary n-3 LC-PUFA not only promote growth and improve the n-3 LC-PUFA content, but also enhance immune function in S. marmoratus.

Effect of handling, confinement and crowding in HSP70 production in Pachygrapsus marmoratus, a model species for climate change experiments

NASA Astrophysics Data System (ADS)

Vinagre, Catarina; Madeira, Diana; Narciso, Luís; Cabral, Henrique N.; Diniz, Mário S.

2012-08-01

The aim of this study was to investigate the effect of handling, confinement and crowding on HSP70 production in an intertidal crab. HSP70 has been widely used as a biochemical indicator of thermal stress; however studies on the effect of experimental conditions and handling on HSP70 expression are very scarce. The response of marbled crab, Pachygrapsus marmoratus, collected in the Portuguese coast, was investigated through an experiment in captivity, where 42 juveniles (10-19 mm of carapace width) were confined in an experimental container (60 × 42 × 10 cm) and exposed to three treatments: 1) increasing temperatures and periodic handling, 2) only to periodic handling and 3) no handling, for 12 h. The objective of this work was to investigate whether the HSP70 production measured in an increasing temperature experiment is a response to temperature alone or whether manipulation, confinement and crowding during the experiment also increase HSP70 production. Three individuals were sampled after t = 0, t = 4, t = 6, t = 8, t = 10 and t = 12 h, for the quantification of HSP70 production in the hemolymph, in the three trials. It was concluded that while temperature has a significant effect on HSP70 production, periodic handling does not, nor does confinement to the experimental container or crowding. It can thus be concluded that experimental conditions and handling are not parasitic variables in experiments with this species considering increasing temperatures. P. marmoratus can thus be used as a model species in climate warming experiments involving handling, confinement and crowding.

New hosts and genetic diversity of Flavobacterium columnare isolated from Brazilian native species and Nile tilapia.

PubMed

Barony, G M; Tavares, G C; Assis, G B N; Luz, R K; Figueiredo, H C P; Leal, C A G

2015-11-17

Flavobacterium columnare is responsible for disease outbreaks in freshwater fish farms. Several Brazilian native fish have been commercially exploited or studied for aquaculture purposes, including Amazon catfish Leiarius marmoratus × Pseudoplatystoma fasciatum and pacamã Lophiosilurus alexandri. This study aimed to identify the aetiology of disease outbreaks in Amazon catfish and pacamã hatcheries and to address the genetic diversity of F. columnare isolates obtained from diseased fish. Two outbreaks in Amazon catfish and pacamã hatcheries took place in 2010 and 2011. Four F. columnare strains were isolated from these fish and identified by PCR. The disease was successfully reproduced under experimental conditions for both fish species, fulfilling Koch's postulates. The genomovar of these 4 isolates and of an additional 11 isolates from Nile tilapia Oreochromis niloticus was determined by 16S rRNA restriction fragment length polymorphism PCR. The genetic diversity was evaluated by phylogenetic analysis of the 16S rRNA gene and repetitive extragenic palindromic PCR (REP-PCR). Most isolates (n = 13) belonged to genomovar II; the remaining 2 isolates (both from Nile tilapia) were assigned to genomovar I. Phylogenetic analysis and REP-PCR were able to demonstrate intragenomovar diversity. This is the first report of columnaris in Brazilian native Amazon catfish and pacamã. The Brazilian F. columnare isolates showed moderate diversity, and REP-PCR was demonstrated to be a feasible method to evaluate genetic variability in this bacterium.

Methyltestosterone efficiently induces male development in the self-fertilizing hermaphrodite fish, Kryptolebias marmoratus.

PubMed

Kanamori, Akira; Yamamura, Aki; Koshiba, Satoshi; Lee, Jae-Seong; Orlando, Edward F; Hori, Hiroshi

2006-10-01

A hermaphrodite fish, Kryptolebias marmoratus, is the only known vertebrate that reproduces by self-fertilization. In nature, males have been rarely observed. Low-temperature treatment during late embryonic stages is known to induce males but its efficacy is variable. Here we report that 17alpha-methyltestosterone (MT) treatment of the embryos converted most of the fish to males. We examined a time course of this male induction with histological and marker gene expression analyses. Oogenesis started in the gonads of the control embryo at hatching; spermatogenesis did not start until two months after hatching. In the MT-treated fish, oogenesis started initially as in the control but stopped completely within one month after hatching. Instead, spermatogonial proliferation started earlier than in the control fish and progressed to full spermatogenesis. Expression profiles of the sex-specific marker genes corresponded well with histological observations. From one month after hatching, expression of an oocyte-specific marker, figalpha, and a testicular somatic cell marker, dmrt1, started to increase in the control and in the MT-treated fish, respectively. (c) 2006 Wiley-Liss, Inc.

Fish embryos on land: terrestrial embryo deposition lowers oxygen uptake without altering growth or survival in the amphibious fish Kryptolebias marmoratus.

PubMed

Wells, Michael W; Turko, Andy J; Wright, Patricia A

2015-10-01

Few teleost fishes incubate embryos out of water, but the oxygen-rich terrestrial environment could provide advantages for early growth and development. We tested the hypothesis that embryonic oxygen uptake is limited in aquatic environments relative to air using the self-fertilizing amphibious mangrove rivulus, Kryptolebias marmoratus, which typically inhabits hypoxic, water-filled crab burrows. We found that adult mangrove rivulus released twice as many embryos in terrestrial versus aquatic environments and that air-reared embryos had accelerated developmental rates. Surprisingly, air-reared embryos consumed 44% less oxygen and possessed larger yolk reserves, but attained the same mass, length and chorion thickness. Water-reared embryos moved their opercula ∼2.5 more times per minute compared with air-reared embryos at 7 days post-release, which probably contributed to the higher rates of oxygen uptake and yolk utilization we observed. Genetically identical air- and water-reared embryos from the same parent were raised to maturity, but the embryonic environment did not affect growth, reproduction or emersion ability in adults. Therefore, although aspects of early development were plastic, these early differences were not sustained into adulthood. Kryptolebias marmoratus embryos hatched out of water when exposed to aerial hypoxia. We conclude that exposure to a terrestrial environment reduces the energetic costs of development partly by reducing the necessity of embryonic movements to dispel stagnant boundary layers. Terrestrial incubation of young would be especially beneficial to amphibious fishes that occupy aquatic habitats of poor water quality, assuming low terrestrial predation and desiccation risks. © 2015. Published by The Company of Biologists Ltd.

The impact of recreational boat traffic on Marbled Murrelets (Brachyramphus marmoratus).

PubMed

Bellefleur, Danielle; Lee, Philip; Ronconi, Robert A

2009-01-01

This study evaluated the impact of small boat traffic on reaction distances of Marbled Murrelets (Brachyramphus marmoratus), in the marine waters of Pacific Rim National Park Reserve, British Columbia, Canada. Observers on moving boats recorded the minimum distance the boat came to murrelets on the water, and any disturbance reaction (fly, dive, no reaction). Out of the 7500 interactions 11.7% flew, 30.8% dove and 58.1% exhibited no flushing reaction. Using a product-limit analysis, we developed curves for the proportion of Marbled Murrelets flushing (dive or flight) as a function of reaction distance. Overall, the majority of Marbled Murrelets waited until boats were within 40 m before reacting, with 25% of the population reacting at 29.2m. A stepwise Cox regression indicated that age, boat speed, and boat density (loaded in that order), significantly affected flushing response. More juveniles flushed than adults (70.1 versus 51.7%), but at closer distances. Faster boats caused a greater proportion of birds to flush, and at further distances (25% of birds flushed at 40 m at speeds > 29 kph versus 28m at speeds <12kph). A stepwise logistic regression on diving and flight responses indicated that birds tended to fly completely out of feeding areas at the approach of boats travelling >28.8 kph and later in the season (July and August). Other secondary variables included; boat density and time of day. Discussion focused on possible management actions such as the application of speed limits, set back distances, and exclusion of boat traffic to protect Marbled Murrelets.

Tributyltin exposure influences predatory behavior, neurotransmitter content and receptor expression in Sebastiscus marmoratus.

PubMed

Yu, Ang; Wang, Xinli; Zuo, Zhenghong; Cai, Jiali; Wang, Chonggang

2013-03-15

Tributyltin (TBT) is a ubiquitous marine contaminant due to its extensive use as a biocide, fungicide and antifouling agent. However, the neurotoxic effect of TBT has not been extensively studied, especially in marine fish. This study was conducted to investigate the effects of TBT (10, 100 and 1000 ng/L) on the predatory behavior of Sebastiscus marmoratus and to look into the mechanism involved. The results showed that TBT exposure depressed predatory activity after 50 days exposure. Dopamine levels in the fish brains increased in a dose-dependent manner, while 5-hydroxytryptamine and norepinephrine levels decreased significantly in the TBT exposure group compared to the control. The mRNA levels of dopamine receptors, which have functions such as cognition, motor activity, motivation and reward, mood, attention and learning, were significantly down-regulated by TBT exposure. Although the levels of amino acid neurotransmitters, including glutamate, did not show marked alteration, the expression of the glutamatergic signaling pathway such as N-methyl-D-aspartate receptors, a-amino-3-hydroxy-5-methylisoxazole-4-propionic acid receptor, calmodulin, Ca(2+)/calmodulin-dependent protein kinases-II and cyclic adenosine monophosphate responsive element binding protein, was significantly reduced by TBT exposure, which indicated that central nerve activities were in a state of depression, thus affecting the predatory activities of the fish. Copyright © 2012 Elsevier B.V. All rights reserved.

Ontogeny of the morphology-performance axis in an amphibious fish (Kryptolebias marmoratus).

PubMed

Styga, Joseph M; Houslay, Thomas M; Wilson, Alastair J; Earley, Ryan L

2017-12-01

Establishing links between morphology and performance is important for understanding the functional, ecological, and evolutionary implications of morphological diversity. Relationships between morphology and performance are expected to be age dependent if, at different points during ontogeny, animals must perform in different capacities to achieve high fitness returns. Few studies have examined how the relationship between form and function changes across ontogeny. Here, we assess this relationship in the amphibious mangrove rivulus (Kryptolebias marmoratus) fish, a species that is both capable of and reliant on "tail-flip jumping" for terrestrial locomotion. Tail-flip jumping entails an individual transferring its weight to the caudal region of the body, launching itself from the substrate to navigate to new aquatic or semi-aquatic habitats. By combining repeated trials of jumping performance in 237 individuals from distinct age classes with a clearing and staining procedure to visualize bones in the caudal region, we test the hypotheses that as age increases (i) average jumping performance (body lengths jumped) will increase, (ii) the amount of variation for each trait will change, and (iii) the patterns of covariation/correlation among traits, which tell us about the integration of form with function, will also change. We find a significant increase in size-adjusted jumping performance with age, and modification to the correlation structure among traits across ontogeny. However, we also find that significant links between form and function evident in young animals disappear at later ontogenetic stages. Our study suggests that different functional mechanisms may be associated with high performance at different stages of development. © 2018 Wiley Periodicals, Inc.

Effect of tributyltin on testicular development in Sebastiscus marmoratus and the mechanism involved.

PubMed

Zhang, Jiliang; Zuo, Zhenghong; He, Chengyong; Cai, Jiali; Wang, Yuqing; Chen, Yixin; Wang, Chonggang

2009-07-01

Organotin compounds, such as tributyltin (TBT), that have been used as antifouling biocides can induce masculinization in female mollusks. However, few studies addressing the effects of TBT on fishes have been reported. The present study was conducted to investigate the effects of TBT at environmentally relevant concentrations (1, 10, and 100 ng/L) on testicular development in Sebastiscus marmoratus and to gain insight into its mechanism of action. After exposure for 48 d, the gonadosomatic index had decreased in a dose-dependent manner. Although the testosterone levels in the testes were elevated and the 17beta-estradiol levels were decreased, spermatogenesis was suppressed. Moreover, gamma-glutamyl transpeptidase activity (which is used as a Sertoli cell marker) was decreased in a dose-dependent manner after TBT exposure, and serious interstitial fibrosis was observed in the interlobular septa of the testes in the 100 ng/L TBT test group. Increases in the retinoid X receptors and peroxisome proliferator activated receptor gamma expression and the progressive enlargement of lipid droplets in the testes were observed after TBT exposure. Estrogen receptor alpha levels in the testes of the fish exposed to TBT decreased in a dose-dependent manner. The reduction of estrogen receptor alpha mRNA resulted from the decrease of 17beta-estradiol levels, and the progressive enlargement of lipid droplets may have contributed to the dysfunction of the Sertoli cells, which then disrupted spermatogenesis.

Diving and foraging patterns of Marbled Murrelets (Brachyramphus marmoratus): Testing predictions from optimal-breathing models

USGS Publications Warehouse

Jodice, Patrick G.R.; Collopy, Michael W.

1999-01-01

The diving behavior of Marbled Murrelets (Brachyramphus marmoratus) was studied using telemetry along the Oregon coast during the 1995 and 1996 breeding seasons and examined in relation to predictions from optimal-breathing models. Duration of dives, pauses, dive bouts, time spent under water during dive bouts, and nondiving intervals between successive dive bouts were recorded. Most diving metrics differed between years but not with oceanographic conditions or shore type. There was no effect of water depth on mean dive time or percent time spent under water even though dive bouts occurred in depths from 3 to 36 m. There was a significant, positive relationship between mean dive time and mean pause time at the dive-bout scale each year. At the dive-cycle scale, there was a significant positive relationship between dive time and preceding pause time in each year and a significant positive relationship between dive time and ensuing pause time in 1996. Although it appears that aerobic diving was the norm, there appeared to be an increase in anaerobic diving in 1996. The diving performance of Marbled Murrelets in this study appeared to be affected by annual changes in environmental conditions and prey resources but did not consistently fit predictions from optimal-breathing models.

Hypercapnia and low pH induce neuroepithelial cell proliferation and emersion behaviour in the amphibious fish Kryptolebias marmoratus.

PubMed

Robertson, Cayleih E; Turko, Andy J; Jonz, Michael G; Wright, Patricia A

2015-10-01

Aquatic hypercapnia may have helped to drive ancestral vertebrate invasion of land. We tested the hypothesis that amphibious fishes sense and respond to elevated aquatic PCO2 by behavioural avoidance mechanisms, and by morphological changes at the chemoreceptor level. Mangrove rivulus (Kryptolebias marmoratus) were exposed to 1 week of normocapnic control water (pH 8), air, hypercapnia (5% CO2, pH 6.8) or isocapnic acidosis (pH 6.8). We found that the density of CO2/H(+) chemoreceptive neuroepithelial cells (NECs) was increased in hypercapnia or isocapnic acidosis-exposed fish. Projection area (a measure of cell size) was unchanged. Acute exposure to progressive hypercapnia induced the fish to emerse (leave water) at water pH values ∼6.1, whereas addition of HCl to water caused a more variable response with a lower pH threshold (∼pH 5.5). These results support our hypothesis and suggest that aquatic hypercapnia provides an adequate stimulus for extant amphibious fishes to temporarily transition from aquatic to terrestrial habitats. © 2015. Published by The Company of Biologists Ltd.

Gill remodelling during terrestrial acclimation reduces aquatic respiratory function of the amphibious fish Kryptolebias marmoratus.

PubMed

Turko, Andy J; Cooper, Chris A; Wright, Patricia A

2012-11-15

The skin-breathing amphibious fish Kryptolebias marmoratus experiences rapid environmental changes when moving between water- and air-breathing, but remodelling of respiratory morphology is slower (~1 week). We tested the hypotheses that (1) there is a trade-off in respiratory function of gills displaying aquatic versus terrestrial morphologies and (2) rapidly increased gill ventilation is a mechanism to compensate for reduced aquatic respiratory function. Gill surface area, which varied inversely to the height of the interlamellar cell mass, was increased by acclimating fish for 1 week to air or low ion water, or decreased by acclimating fish for 1 week to hypoxia (~20% dissolved oxygen saturation). Fish were subsequently challenged with acute hypoxia, and gill ventilation or oxygen uptake was measured. Fish with reduced gill surface area increased ventilation at higher dissolved oxygen levels, showed an increased critical partial pressure of oxygen and suffered impaired recovery compared with brackish water control fish. These results indicate that hyperventilation, a rapid compensatory mechanism, was only able to maintain oxygen uptake during moderate hypoxia in fish that had remodelled their gills for land. Thus, fish moving between aquatic and terrestrial habitats may benefit from cutaneously breathing oxygen-rich air, but upon return to water must compensate for a less efficient branchial morphology (mild hypoxia) or suffer impaired respiratory function (severe hypoxia).

Nine co-localized cytochrome P450 genes of the CYP2N, CYP2AD, and CYP2P gene families in the mangrove killifish Kryptolebias marmoratus genome: Identification and expression in response to B[α]P, BPA, OP, and NP.

PubMed

Puthumana, Jayesh; Kim, Bo-Mi; Jeong, Chang-Bum; Kim, Duck-Hyun; Kang, Hye-Min; Jung, Jee-Hyun; Kim, Il-Chan; Hwang, Un-Ki; Lee, Jae-Seong

2017-06-01

The CYP2 genes are the largest and most diverse cytochrome P450 (CYP) subfamily in vertebrates. We have identified nine co-localized CYP2 genes (∼55kb) in a new cluster in the genome of the highly resilient ecotoxicological fish model Kryptolebias marmoratus. Molecular characterization, temporal and tissue-specific expression pattern, and response to xenobiotics of these genes were examined. The CYP2 gene clusters were characterized and designated CYP2N22-23, CYP2AD12, and CYP2P16-20. Gene synteny analysis confirmed that the cluster in K. marmoratus is similar to that found in other teleost fishes, including zebrafish. A gene duplication event with diverged catalytic function was observed in CYP2AD12. Moreover, a high level of divergence in expression was observed among the co-localized genes. Phylogeny of the cluster suggested an orthologous relationship with similar genes in zebrafish and Japanese medaka. Gene expression analysis showed that CYP2P19 and CYP2N20 were consecutively expressed throughout embryonic development, whereas CYP2P18 was expressed in all adult tissues, suggesting that members of each CYP2 gene family have different physiological roles even though they are located in the same cluster. Among endocrine-disrupting chemicals (EDCs), benzo[α]pyrene (B[α]P) induced expression of CYP2N23, bisphenol A (BPA) induced CYP2P18 and CYP2P19, and 4-octylphenol (OP) induced CYP2AD12, but there was no significant response to 4-nonylphenol (NP), implying differential catalytic roles of the enzyme. In this paper, we identify and characterize a CYP2 gene cluster in the mangrove killifish K. marmoratus with differing catalytic roles toward EDCs. Our findings provide insights on the roles of nine co-localized CYP2 genes and their catalytic functions for better understanding of chemical-biological interactions in fish. Copyright © 2017 Elsevier B.V. All rights reserved.

Modeling marbled murrelet (Brachyramphus marmoratus) habitat using LiDAR-derived canopy data

USGS Publications Warehouse

Hagar, Joan C.; Eskelson, Bianca N.I.; Haggerty, Patricia K.; Nelson, S. Kim; Vesely, David G.

2014-01-01

LiDAR (Light Detection And Ranging) is an emerging remote-sensing tool that can provide fine-scale data describing vertical complexity of vegetation relevant to species that are responsive to forest structure. We used LiDAR data to estimate occupancy probability for the federally threatened marbled murrelet (Brachyramphus marmoratus) in the Oregon Coast Range of the United States. Our goal was to address the need identified in the Recovery Plan for a more accurate estimate of the availability of nesting habitat by developing occupancy maps based on refined measures of nest-strand structure. We used murrelet occupancy data collected by the Bureau of Land Management Coos Bay District, and canopy metrics calculated from discrete return airborne LiDAR data, to fit a logistic regression model predicting the probability of occupancy. Our final model for stand-level occupancy included distance to coast, and 5 LiDAR-derived variables describing canopy structure. With an area under the curve value (AUC) of 0.74, this model had acceptable discrimination and fair agreement (Cohen's κ = 0.24), especially considering that all sites in our sample were regarded by managers as potential habitat. The LiDAR model provided better discrimination between occupied and unoccupied sites than did a model using variables derived from Gradient Nearest Neighbor maps that were previously reported as important predictors of murrelet occupancy (AUC = 0.64, κ = 0.12). We also evaluated LiDAR metrics at 11 known murrelet nest sites. Two LiDAR-derived variables accurately discriminated nest sites from random sites (average AUC = 0.91). LiDAR provided a means of quantifying 3-dimensional canopy structure with variables that are ecologically relevant to murrelet nesting habitat, and have not been as accurately quantified by other mensuration methods.

Cloning of growth hormone, somatolactin, and their receptor mRNAs, their expression in organs, during development, and on salinity stress in the hermaphroditic fish, Kryptolebias marmoratus.

PubMed

Rhee, Jae-Sung; Kim, Bo-Mi; Seo, Jung Soo; Kim, Il-Chan; Lee, Young-Mi; Lee, Jae-Seong

2012-04-01

Salinity is an important parameter that affects survival and metabolism in fish. In fish, pituitary growth hormone (GH) regulates physiological functions including adaptation to different salinity as well as somatic growth. GH is stimulated by growth hormone-releasing hormone (GHRH) and exerts its function via binding to growth hormone receptor (GHR). As Kryptolebias marmoratus is a euryhaline fish, this species would be a useful model species for studying the adaptation to osmotic stress conditions. Here, we cloned GH, -GHR, somatolactin (SL), and somatolactin receptor (SLR) genes, and analyzed their expression patterns in different tissues and during early developmental stages by using real-time RT-PCR. We also further examined expression of them after acclimation to different salinity. Tissue distribution studies revealed that Km-GH and -SL mRNAs were remarkably expressed in brain and pituitary, whereas Km-GHR and -SLR mRNAs were predominantly expressed in liver, followed by gonad, muscle, pituitary, and brain. During embryonic developmental stages, the expression of their mRNA was increased at stage 3 (9 dpf). The Km-GH and -SL mRNA transcripts were constantly elevated until stage 5 (5h post hatch), whereas Km-GHR and -SLR mRNA levels decreased at this stage. After we transferred K. marmoratus from control (12 psu) to hyper-osmotic condition (hyperseawater, HSW; 33 psu), Km-GH, -SL, and GHR mRNA levels were enhanced. In hypo-osmotic conditions like freshwater (FW), Km-GH and -SL expressions were modulated 24 h after exposure, and Km-SLR transcripts were significantly upregulated. This finding suggests that Km-GH and -SL may be involved in the osmoregulatory mechanism under hyper-osmotic as well as hypo-osmotic stress. This is the first report on transcriptional modulation and relationship of GH, GHR, SL, and SLR during early development and after salinity stress. This study will be helpful to a better understanding on molecular mechanisms of adaptation response

Place learning prior to and after telencephalon ablation in bamboo and coral cat sharks (Chiloscyllium griseum and Atelomycterus marmoratus).

PubMed

Fuss, Theodora; Bleckmann, Horst; Schluessel, Vera

2014-01-01

This study assessed complex spatial learning and memory in two species of shark, the grey bamboo shark (Chiloscyllium griseum) and the coral cat shark (Atelomycterus marmoratus). It was hypothesized that sharks can learn and apply an allocentric orientation strategy. Eight out of ten sharks successfully completed the initial training phase (by locating a fixed goal position in a diamond maze from two possible start points) within 14.9 ± 7.6 sessions and proceeded to seven sets of transfer tests, in which sharks had to perform under altered environmental conditions. Transfer tests revealed that sharks had oriented and solved the tasks visually, using all of the provided environmental cues. Unintentional cueing did not occur. Results correspond to earlier studies on spatial memory and cognitive mapping in other vertebrates. Future experiments should investigate whether sharks possess a cognitive spatial mapping system as has already been found in several teleosts and stingrays. Following the completion of transfer tests, sharks were subjected to ablation of most of the pallium, which compromised their previously acquired place learning abilities. These results indicate that the telencephalon plays a crucial role in the processing of information on place learning and allocentric orientation strategies.

COUPLING BETWEEN THE COASTAL OCEAN AND YAQUINA BAY, OREGON: THE IMPORTANCE OF OCEANIC INPUTS RELATIVE TO OTHER NITROGEN SOURCES

EPA Science Inventory

Understanding of the role of oceanic input in nutrient loadings is important for understanding nutrient and phytoplankton dynamics in estuaries adjacent to coastal upwelling regions as well as determining the natural background conditions. We examined the nitrogen sources to Yaqu...

Effects of Cryptocaryon irritans infection on the survival, feeding, respiratory rate and ionic regulation of the marbled rockfish Sebastiscus marmoratus.

PubMed

Yin, Fei; Gong, Qiyang; Li, Yanwei; Dan, Xueming; Sun, Peng; Gao, Quanxin; Shi, Zhaohong; Peng, Shiming; Li, Anxing

2014-02-01

To clarify the effects of a Cryptocaryon irritans infection on the physiological functions of the marbled rockfish Sebastiscus marmoratus, this study utilized C. irritans at concentrations of 2500; 5000; 7500; 10,000; 20,000; and 30,000 theronts/fish to infect marbled rockfish weighing 45 ± 3 g. The survival rate, food intake, respiratory rate, serum ion concentrations and gill Na+/K+-ATPase activity were determined. With the increase of the infection concentration and the passage of time, the survival rate of the rockfish gradually decreased. The groups infected with more than 5000 theronts/fish had stopped feeding within 4 days. The respiratory rates of the fish in the groups infected with 2500 and 5000 theronts/fish initially increased and then decreased. In contrast, the respiratory rate of the fish in the groups infected with more than 7500 theronts/fish was elevated to levels significantly higher than the control group after 12 h. The Na+/K+-ATPase activity and serum Na+ and Cl- concentrations increased with increasing infection concentration. In conclusion, the physiological functions of the fish infected with low concentrations of C. irritans can be effectively restored, whereas a high concentration infection induced severe stress. The declined food intake and accelerated respiratory rate could be useful for an early warning system as important indicators.

Microhabitat associations of a semi-terrestrial fish, Kryptolebias marmoratus (Poey 1880) in a mosquito-ditched mangrove forest, west-central Florida

USGS Publications Warehouse

Richards, Travis M.; Krebs, Justin M.; McIvor, Carole C.

2011-01-01

Mangrove rivulus (Kryptolebias marmoratus) is one of the few species of fish that is semi-terrestrial and able to use exposed intertidal and potentially supratidal habitats for prolonged periods of time. Based on previous work demonstrating frequent use of subterranean crab burrows as well as damp leaf litter and logs, we examined the microhabitat associations of rivulus in a mosquito-ditched mangrove forest on the Gulf coast of Florida near the northern limit of its distribution. We captured 161 rivulus on 20 dates between late April and mid-December 2007 using trench traps. Fish ranged in size from 7 to 35 mm SL. Peak abundance in mid-summer coincided with recruitment of a new year-class. The three study sites occurred within 0.5 km of one another, and experienced similar water temperatures and salinities. Nevertheless, they differed in their degree of tidal inundation, standing stock of leaf litter, and density of entrances to fiddler crab burrows. We consistently observed the highest mean catches of rivulus away from permanent subtidal waters of mosquito ditches, at intermediate relative elevations, and where leaf litter was locally abundant. Density of entrances to crab burrows was apparently unrelated to rivulus distribution or abundance in these forests.

Modern Foreign Languages: A Refereed Journal of Linguistics and Applied Linguistics, 2002.

ERIC Educational Resources Information Center

Ying, Du, Ed; Zidong, Huang, Ed.

2002-01-01

These four issues contain the following articles, written in Chinese (with one exception): "Economy Principles and Chinese Verbless Sentences" (Sze-Wing Tang); "Multiple Wh-Question and the Functional Interpretation of Wh-Phrases" (Wu Ya-Quing); "Towards the Meaning-Text Model and its Function of Lexical Definition"…

Action of the Metalloproteinases in Gonadal Remodeling during Sex Reversal in the Sequential Hermaphroditism of the Teleostei Fish Synbranchus marmoratus (Synbranchiformes: Synbranchidae)

PubMed Central

Mazzoni, Talita Sarah; Lo Nostro, Fabiana Laura; Antoneli, Fernanda Natália; Quagio-Grassiotto, Irani

2018-01-01

Teleostei present great plasticity regarding sex change. During sex reversal, the whole gonad including the germinal epithelium undergoes significant changes, remodeling, and neoformation. However, there is no information on the changes that occur within the interstitial compartment. Considering the lack of information, especially on the role played by metalloproteinases (MMPs) in fish gonadal remodeling, the aim of this study was to evaluate the action of MMPs on gonads of sex reversed females of Synbranchus marmoratus, a fresh water protogynic diandric fish. Gonads were processed for light microscopy and blood samples were used for the determination of plasma sex steroid levels. During sex reversal, degeneration of the ovaries occurred and were gradually replaced by the germinal tissue of the male. The action of the MMPs induces significant changes in the interstitial compartment, allowing the reorganization of germinal epithelium. Leydig cells also showed an important role in female to male reversion. The gonadal transition coincides with changes in circulating sex steroid levels throughout sex reversion. The action of the MMPs, in the gonadal remodeling, especially on the basement membrane, is essential for the establishment of a new functional germinal epithelium. PMID:29695033

Cutaneous vasoregulation during short- and long-term aerial acclimation in the amphibious mangrove rivulus, Kryptolebias marmoratus.

PubMed

Cooper, C A; Litwiller, S L; Murrant, C L; Wright, P A

2012-03-01

The mangrove rivulus (Kryptolebias marmoratus) is an amphibious fish and evidence suggests that the cutaneous surface is the primary site of gas exchange during emersion. The aim of this study was to determine whether cutaneous blood vessels were regulated in the caudal fin during the initial transition from water to aerial exposure, and after 10 days of aerial acclimation. Acute changes (first 3 min following emersion) in the cutaneous vessels diameter were measured in real-time on live fish using light microscopy. The data show that under control conditions, only arterioles in the caudal fin were vasoactive. During the first 20s of aerial acclimation the arterioles significantly constricted (-2.1 ± 0.4 μm), which was followed immediately by a relaxation (from 40 to 180 s). This vasoconstriction was eliminated with the addition of phentolamine (50 μmoll(-1)), which indicates that the vasoconstriction was mediated by α-adrenoreceptors. Longer-term changes in the cutaneous surface vasculature were determined using fluorescent immunohistochemistry and antibodies for the endothelial marker, CD31. Fish aerially acclimated for 10 days exhibited significantly higher levels of endothelial fluorescence in the caudal fin when compared to control fish in water, indicating endothelial cell production (i.e. angiogenesis). These data combined show that for every emersion episode, there is an initial α-adrenergic mediated vasoconstriction, which is most likely, a stress response. This is then followed by a long-term acclimation involving an upregulation in endothelial cell production, which would subsequently enhance blood perfusion to the cutaneous surface and potentially increase the capacity for gas exchange with the external environment. Copyright © 2011 Elsevier Inc. All rights reserved.

Testing the effectiveness of automated acoustic sensors for monitoring vocal activity of Marbled Murrelets Brachyramphus marmoratus

USGS Publications Warehouse

Cragg, Jenna L.; Burger, Alan E.; Piatt, John F.

2015-01-01

Cryptic nest sites and secretive breeding behavior make population estimates and monitoring of Marbled Murrelets Brachyramphus marmoratus difficult and expensive. Standard audio-visual and radar protocols have been refined but require intensive field time by trained personnel. We examined the detection range of automated sound recorders (Song Meters; Wildlife Acoustics Inc.) and the reliability of automated recognition models (“recognizers”) for identifying and quantifying Marbled Murrelet vocalizations during the 2011 and 2012 breeding seasons at Kodiak Island, Alaska. The detection range of murrelet calls by Song Meters was estimated to be 60 m. Recognizers detected 20 632 murrelet calls (keer and keheer) from a sample of 268 h of recordings, yielding 5 870 call series, which compared favorably with human scanning of spectrograms (on average detecting 95% of the number of call series identified by a human observer, but not necessarily the same call series). The false-negative rate (percentage of murrelet call series that the recognizers failed to detect) was 32%, mainly involving weak calls and short call series. False-positives (other sounds included by recognizers as murrelet calls) were primarily due to complex songs of other bird species, wind and rain. False-positives were lower in forest nesting habitat (48%) and highest in shrubby vegetation where calls of other birds were common (97%–99%). Acoustic recorders tracked spatial and seasonal trends in vocal activity, with higher call detections in high-quality forested habitat and during late July/early August. Automated acoustic monitoring of Marbled Murrelet calls could provide cost-effective, valuable information for assessing habitat use and temporal and spatial trends in nesting activity; reliability is dependent on careful placement of sensors to minimize false-positives and on prudent application of digital recognizers with visual checking of spectrograms.

Out of the frying pan into the air—emersion behaviour and evaporative heat loss in an amphibious mangrove fish (Kryptolebias marmoratus)

PubMed Central

Gibson, Daniel J.; Sylvester, Emma V. A.; Turko, Andy J.; Tattersall, Glenn J.; Wright, Patricia A.

2015-01-01

Amphibious fishes often emerse (leave water) when faced with unfavourable water conditions. How amphibious fishes cope with the risks of rising water temperatures may depend, in part, on the plasticity of behavioural mechanisms such as emersion thresholds. We hypothesized that the emersion threshold is reversibly plastic and thus dependent on recent acclimation history rather than on conditions during early development. Kryptolebias marmoratus were reared for 1 year at 25 or 30°C and acclimated as adults (one week) to either 25 or 30°C before exposure to an acute increase in water temperature. The emersion threshold temperature and acute thermal tolerance were significantly increased in adult fish acclimated to 30°C, but rearing temperature had no significant effect. Using a thermal imaging camera, we also showed that emersed fish in a low humidity aerial environment (30°C) lost significantly more heat (3.3°C min−1) than those in a high humidity environment (1.6°C min−1). In the field, mean relative humidity was 84%. These results provide evidence of behavioural avoidance of high temperatures and the first quantification of evaporative cooling in an amphibious fish. Furthermore, the avoidance response was reversibly plastic, flexibility that may be important for tropical amphibious fishes under increasing pressures from climatic change. PMID:26490418

Out of the frying pan into the air--emersion behaviour and evaporative heat loss in an amphibious mangrove fish (Kryptolebias marmoratus).

PubMed

Gibson, Daniel J; Sylvester, Emma V A; Turko, Andy J; Tattersall, Glenn J; Wright, Patricia A

2015-10-01

Amphibious fishes often emerse (leave water) when faced with unfavourable water conditions. How amphibious fishes cope with the risks of rising water temperatures may depend, in part, on the plasticity of behavioural mechanisms such as emersion thresholds. We hypothesized that the emersion threshold is reversibly plastic and thus dependent on recent acclimation history rather than on conditions during early development. Kryptolebias marmoratus were reared for 1 year at 25 or 30°C and acclimated as adults (one week) to either 25 or 30°C before exposure to an acute increase in water temperature. The emersion threshold temperature and acute thermal tolerance were significantly increased in adult fish acclimated to 30°C, but rearing temperature had no significant effect. Using a thermal imaging camera, we also showed that emersed fish in a low humidity aerial environment (30°C) lost significantly more heat (3.3°C min(-1)) than those in a high humidity environment (1.6°C min(-1)). In the field, mean relative humidity was 84%. These results provide evidence of behavioural avoidance of high temperatures and the first quantification of evaporative cooling in an amphibious fish. Furthermore, the avoidance response was reversibly plastic, flexibility that may be important for tropical amphibious fishes under increasing pressures from climatic change. © 2015 The Author(s).

A new genus of proteocephalid tapeworm (Cestoda) from the marbled swamp eel Synbranchus marmoratus Bloch (Synbranchiformes: Synbranchidae) in the River Paraná basin, Argentina.

PubMed

Arredondo, Nathalia J; Alves, Philippe Vieira; Gil de Pertierra, Alicia A

2017-05-05

Synbranchiella gen. n. is proposed to accommodate Synbranchiella mabelae sp. n. (Proteocephalidae: Monticelliinae) from the intestine of the marbled swamp eel Synbranchus marmoratus Bloch, in the River Colastiné, a tributary of the middle River Paraná in Argentina. The new genus is placed in the Monticelliinae because of the cortical position of the genital organs. It differs from all known monticelliine genera by the following combination of characters: (i) scolex robust, with a conical apex, without metascolex; (ii) biloculate suckers with a conspicuous septum separating unequally-sized loculi and a robust non-adherent area, lacking free posterior margin; (iii) vitelline follicles in two narrow lateral bands, extended throughout the nearly entire proglottid length; (iv) vagina always anterior to the cirrus-sac, with an inconspicuous vaginal sphincter; (v) a genital pore pre-equatorial. Scanning electron microscopy revealed three types of microtriches on the tegument surface: acicular and capiliform filitriches and gladiate spinitriches. A phylogenetic analysis of the large subunit nuclear ribosomal RNA gene (lsrDNA, D1-D3 domains) confirms that S. mabelae represents an independent lineage within a large clade comprised mainly from Neotropical taxa parasitising catfishes. This is the second proteocephalidean cestode described from a Neotropical synbranchiform fish host.

The amphibious fish Kryptolebias marmoratus uses different strategies to maintain oxygen delivery during aquatic hypoxia and air exposure.

PubMed

Turko, Andy J; Robertson, Cayleih E; Bianchini, Kristin; Freeman, Megan; Wright, Patricia A

2014-11-15

Despite the abundance of oxygen in atmospheric air relative to water, the initial loss of respiratory surface area and accumulation of carbon dioxide in the blood of amphibious fishes during emersion may result in hypoxemia. Given that the ability to respond to low oxygen conditions predates the vertebrate invasion of land, we hypothesized that amphibious fishes maintain O2 uptake and transport while emersed by mounting a co-opted hypoxia response. We acclimated the amphibious fish Kryptolebias marmoratus, which are able to remain active for weeks in both air and water, for 7 days to normoxic brackish water (15‰, ~21kPa O2; control), aquatic hypoxia (~3.6kPa), normoxic air (~21 kPa) or aerial hypoxia (~13.6kPa). Angiogenesis in the skin and bucco-opercular chamber was pronounced in air- versus water-acclimated fish, but not in response to hypoxia. Aquatic hypoxia increased the O2-carrying capacity of blood via a large (40%) increase in red blood cell density and a small increase in the affinity of hemoglobin for O2 (P50 decreased 11%). In contrast, air exposure increased the hemoglobin O2 affinity (decreased P50) by 25% without affecting the number of red blood cells. Acclimation to aerial hypoxia both increased the O2-carrying capacity and decreased the hemoglobin O2 affinity. These results suggest that O2 transport is regulated both by O2 availability and also, independently, by air exposure. The ability of the hematological system to respond to air exposure independent of O2 availability may allow extant amphibious fishes, and may also have allowed primitive tetrapods to cope with the complex challenges of aerial respiration during the invasion of land. © 2014. Published by The Company of Biologists Ltd.

Comparison of metallothionein concentrations and tissue distribution of trace metals in crabs (Pachygrapsus marmoratus) from a metal-rich estuary, in and out of the reproductive season.

PubMed

Mouneyrac, C; Amiard-Triquet, C; Amiard, J C; Rainbow, P S

2001-07-01

Crabs, Pachygrapsus marmoratus, were sampled in June 1997 and February 1998 from two sites (at the mouth and 25 km upstream) in the metal-rich Gironde estuary, France. Gills and hepatopancreas were analysed for metal (Cd, Cu, Zn) and metallothionein (MT) contents, in order to examine the influence of both biological and environmental factors on the physico-chemical forms of detoxified metal storage in the crabs. The concentrations of MT and both cytosolic and insoluble metals were not greatly different between males and females, and the influence of organ weights was also minimal. Intersite differences were observed, probably resulting from the gradient of salinity in the estuary, which interacts with both the chemical speciation and bioavailability of metals, and the general protein metabolism of the crabs. Seasonal changes were also important, probably in interaction with the moult and reproductive cycles. In February, concentrations of insoluble metals were generally higher than in June, in both organs, suggesting that essential metals, particularly Zn, are stored during winter then remobilised during the breeding season. The natural variability in the concentrations of MT often concealed any relationship with accumulated metal concentrations. Thus MT in crabs cannot be considered as a useful biomarker of metal pollution.

Co-expression of antioxidant enzymes with expression of p53, DNA repair, and heat shock protein genes in the gamma ray-irradiated hermaphroditic fish Kryptolebias marmoratus larvae.

PubMed

Rhee, Jae-Sung; Kim, Bo-Mi; Kim, Ryeo-Ok; Seo, Jung Soo; Kim, Il-Chan; Lee, Young-Mi; Lee, Jae-Seong

2013-09-15

To investigate effects of gamma ray irradiation in the hermaphroditic fish, Kryptolebias marmoratus larvae, we checked expression of p53, DNA repair, and heat shock protein genes with several antioxidant enzyme activities by quantitative real-time RT-PCR and biochemical methods in response to different doses of gamma radiation. As a result, the level of gamma radiation-induced DNA damage was initiated after 4Gy of radiation, and biochemical and molecular damage became substantial from 8Gy. In particular, several DNA repair mechanism-related genes were significantly modulated in the 6Gy gamma radiation-exposed fish larvae, suggesting that upregulation of such DNA repair genes was closely associated with cell survival after gamma irradiation. The mRNA expression of p53 and most hsps was also significantly upregulated at high doses of gamma radiation related to cellular damage. This finding indicates that gamma radiation can induce oxidative stress with associated antioxidant enzyme activities, and linked to modulation of the expression of DNA repair-related genes as one of the defense mechanisms against radiation damage. This study provides a better understanding of the molecular mode of action of defense mechanisms upon gamma radiation in fish larvae. Copyright © 2013 Elsevier B.V. All rights reserved.

Effects of increased temperature on metabolic activity and oxidative stress in the first life stages of marble trout (Salmo marmoratus).

PubMed

Simčič, Tatjana; Jesenšek, Dušan; Brancelj, Anton

2015-08-01

Climate change may result in future alterations in thermal regime which could markedly affect the early developmental stages of cold water fish due to their expected high sensitivity to increasing temperature. In the present study, the effect of temperature increase of 2, 4 and 6°C on the oxygen consumption rate (R), the activity of respiratory electron transport system (ETS) and oxidative stress have been studied in four developmental stages of the marble trout (Salmo marmoratus)-eyed eggs, yolk-sac larvae and juveniles of 1 and 3 months. Oxygen consumption rate and ETS activity increased with level of development and with temperature in all four stages. ETS/R ratios decreased during development and correlated with temperature in eyed eggs, larvae and juveniles of 1 month, but not in juveniles of 3 months. Low ETS/R ratios at higher temperatures indicate stress response in eyed eggs, the most temperature sensitive developmental stage. Catalase (CAT) and glutathione reductase (GR) activities increased during development, but responded differently to elevated temperature in the different developmental stages. Stress in eyed eggs, caused by higher temperatures, resulted in increased oxygen consumption rate and increased activities of CAT and GR. Larvae were sensitive to increased temperature only at the highest experimental temperature of 16°C. Increased temperature did not stress the metabolism of the juveniles, since they were able to compensate their metabolic activity. The earlier developmental stages of marble trout are thus more sensitive to temperature increase than juveniles and therefore more endangered by higher water temperatures. This is the first report connecting oxygen consumption, ETS activity and ETS/R ratio with the activities of antioxidant enzymes in relation to increased temperature in salmonids.

Delayed impacts of developmental exposure to 17-α-ethinylestradiol in the self-fertilizing fish Kryptolebias marmoratus.

PubMed

Voisin, Anne-Sophie; Fellous, Alexandre; Earley, Ryan L; Silvestre, Frédéric

2016-11-01

17-α-ethinylestradiol (EE2) is one of the most potent endocrine disrupting compounds found in the aquatic environments, and is known to strongly alter fish reproduction and fitness. While the effects of direct exposure to EE2 are well studied in adults, there is an increasing need to assess the impacts of exposure during early life stages. Sensitivity to pollutants during this critical window can potentially affect the phenotype later in life or in subsequent generations. This study investigated phenotypic outcome of early-life exposure to 17-α-ethinylestradiol during development and in adults of the mangrove rivulus, Kryptolebias marmoratus. Being one of the only two known self-fertilizing hermaphroditic vertebrates, this fish makes it possible to work with genetically identical individuals. Therefore, using rivulus makes it possible to examine, explicitly, the phenotypic effects of environmental variance while eliminating the effects of genetic variance. Genetically identical rivulus were exposed for the first 28days post hatching (dph) to 0, 4 or 120ng/L of EE2, and then were reared in uncontaminated water until 168dph. Growth, egg laying and steroid hormone levels (estradiol, cortisol, 11-ketotestosterone, testosterone) were measured throughout development. Exposed fish showed a reduction in standard length directly after exposure (28dph), which was more pronounced in the 120ng/L group. This was followed by compensatory growth when reared in clean water: all fish recovered a similar size as controls by 91dph. There was no difference in the age at maturity and the proportions of mature, non-mature and male individuals at 168dph. At 4ng/L, fish layed significantly fewer eggs than controls, while, surprisingly, reproduction was not affected at 120ng/L. Despite a decrease in fecundity at 4ng/L, there were no changes in hormones levels at the lower concentration. In addition, there were no significant differences among treatments immediately after exposure

Chromosome evolution in three Brazilian Leptodactylus species (Anura, Leptodactylidae), with phylogenetic considerations.

PubMed

Reinaldo Cruz Campos, João; Ananias, Fernando; Aguirre Brasileiro, Cinthia; Yamamoto, Marcos; Fernando Baptista Haddad, Célio; Kasahara, Sanae

2009-05-01

Karyotypic analyses on three species of the Leptodactylus from Brazil showed 2n=24 in L. cf. marmoratus, 2n=23 in Leptodactylus sp. (aff. bokermanni), and 2n=26 in L. hylaedactylus, with distinct numbers of bi and uni-armed chromosomes. Leptodactylus cf. marmoratus presented a variation as regard to the morphology of pair 12. All specimens of L. cf. marmoratus had Ag-NOR in pair 6, confirmed by FISH, but the sample from one of the localities presented additional Ag-NOR, in one of the chromosomes 8. In Leptodactylus sp. (aff. bokermanni) and L. hylaedactylus the chromosome pairs bearing Ag-NOR are 11 and 7, respectively. The C banding patterns are predominantly centromeric, but only in L. marmoratus this heterochromatin appeared very brilliant with DAPI. On the other hand, bright labelling was noticed with CMA(3) in the three species, on the Ag-NOR site. The data obtained here are in accordance with the proposed phylogeny to the genus, and the chromosomal analyses in these Leptodactylus showed that the karyotype evolution was based mainly in centric fusion and pericentric inversion.

The Genome of the Self-Fertilizing Mangrove Rivulus Fish, Kryptolebias marmoratus: A Model for Studying Phenotypic Plasticity and Adaptations to Extreme Environments.

PubMed

Kelley, Joanna L; Yee, Muh-Ching; Brown, Anthony P; Richardson, Rhea R; Tatarenkov, Andrey; Lee, Clarence C; Harkins, Timothy T; Bustamante, Carlos D; Earley, Ryan L

2016-08-16

The mangrove rivulus (Kryptolebias marmoratus) is one of two preferentially self-fertilizing hermaphroditic vertebrates. This mode of reproduction makes mangrove rivulus an important model for evolutionary and biomedical studies because long periods of self-fertilization result in naturally homozygous genotypes that can produce isogenic lineages without significant limitations associated with inbreeding depression. Over 400 isogenic lineages currently held in laboratories across the globe show considerable among-lineage variation in physiology, behavior, and life history traits that is maintained under common garden conditions. Temperature mediates the development of primary males and also sex change between hermaphrodites and secondary males, which makes the system ideal for the study of sex determination and sexual plasticity. Mangrove rivulus also exhibit remarkable adaptations to living in extreme environments, and the system has great promise to shed light on the evolution of terrestrial locomotion, aerial respiration, and broad tolerances to hypoxia, salinity, temperature, and environmental pollutants. Genome assembly of the mangrove rivulus allows the study of genes and gene families associated with the traits described above. Here we present a de novo assembled reference genome for the mangrove rivulus, with an approximately 900 Mb genome, including 27,328 annotated, predicted, protein-coding genes. Moreover, we are able to place more than 50% of the assembled genome onto a recently published linkage map. The genome provides an important addition to the linkage map and transcriptomic tools recently developed for this species that together provide critical resources for epigenetic, transcriptomic, and proteomic analyses. Moreover, the genome will serve as the foundation for addressing key questions in behavior, physiology, toxicology, and evolutionary biology. © The Author 2016. Published by Oxford University Press on behalf of the Society for Molecular

[Dietary composition and food competition of six main fish species in rocky reef habitat off Gouqi Island].

PubMed

Wang, Kai; Zhang, Shou-Yu; Wang, Zhen-Hua; Zhao, Jing; Xu, Min; Lin, Jun

2012-02-01

Based on the monthly investigation data of fish resources in the rocky reef habitat off Gouqi Island from March 2009 to February 2010, this paper studied the dietary composition of three native fish species (Sebasticus marmoratus, Hexagrammos otakii and Hexagrammos agrammus) and three non-native fish species (Lateolabrax japonica, Nibea albiflora and Larimichthys polyactis). The analysis of gut content indicated that the main prey items of these six dominant fish species were Caprellidae, Gammaridea, juvenile S. marmoratus, Engraulis japonicas and Acetes chinensis and the dietary composition of each of the 6 fish species had obvious seasonal variation. There was an intense food competition between native species H. otakii and H. agrammus in autumn, between non-native species N. albiflora and L. polyactis in summer, between non-native species N. albiflora and native species S. marmoratus in autumn, and between non-native species N. albiflora and native species H. otakii in winter. It was suggested the non-native species N. albiflora was the key species in the food competition among the six dominant fish species in this rocky reef habitat, and thus the feeding behaviors of these six fish species could have definite effects on the resource capacity of juvenile S. marmoratus.

Predator-prey interactions between Synbranchus marmoratus (Teleostei: Synbranchidae) and Hypsiboas pulchellus tadpoles (Amphibia: Hylidae): importance of lateral line in nocturnal predation and effects of fenitrothion exposure.

PubMed

Junges, Celina M; Lajmanovich, Rafael C; Peltzer, Paola M; Attademo, Andres M; Bassó, Agustín

2010-11-01

Environmental contaminants can disrupt interactions between aquatic species by altering community structure. We explored predator-prey interactions between marbled swamp juvenile eels (Synbranchus marmoratus; predator) and anuran tadpoles (Hypsiboas pulchellus; prey) in relation to two aspects: the importance of lateral line in the predator and whether the absence of light modifies predation rates; and the effect of a sub-lethal concentration of fenitrothion on both predator and prey. Eels were tested under two sensory conditions (lateral line intact and lateral line blocked by cobalt chloride) in dark conditions. Predation rates were evaluated using different treatments that combined predator and prey exposed or not to insecticide. Acetylcholinesterase (AChE) and butyrylcholinesterase (BChE) activities were also measured in muscle samples of eels and tadpoles to explore whether fenitrothion affects predator and prey differentially. Marbled swamp eels were more efficient in feeding on tadpoles during the night than during the day, showing that lateral line makes an important contribution to prey detection and capture. Regarding pesticide effects, short-term (6 h) exposure to an ecologically relevant fenitrothion dose of 2.5 mg L(-1) altered the predator-prey relationship by changing prey behaviour, reducing prey detection and therefore increasing tadpole survival. At this concentration, the outcome of the predator-prey relationship appears biased in favor of the exposed tadpoles, which were released from predation risk, despite their altered behaviour and the higher inhibition percentages of tail BChE (70%) and AChE (51%) than in control individuals. Our study involving these model species and agrochemicals demonstrates that fenitrothion affected the outcome of a predator-prey relationship. Further studies are needed, in these species and other native amphibians, to investigate the nature of the mechanisms responsible for the adverse effects of pesticides on

Oxygen drives skeletal muscle remodeling in an amphibious fish out of water.

PubMed

Rossi, Giulia S; Turko, Andy J; Wright, Patricia A

2018-04-24

Skeletal muscle remodeling in response to terrestrial acclimation improves the locomotor performance of some amphibious fishes on land, but the cue for this remodeling is unknown. We tested the hypothesis that muscle remodeling in the amphibious Kryptolebias marmoratus on land is driven by higher O 2 availability in atmospheric air, and the alternative hypothesis that remodeling is induced by a different environmental or physiological condition fish experience on land. Fish were acclimated to 28 days of air, aquatic hyperoxia, hypercapnia, hypoxia, elevated temperature, or fasting conditions. Air, fasting, and hyperoxic conditions increased (>25%) the size of oxidative fibers in K. marmoratus while hypoxia had the reverse effect (23% decrease). Surprisingly, hyperoxia-acclimation also resulted in a transformation of the musculature to include large bands of oxidative-like muscle. Our results show that K. marmoratus is highly responsive to environmental O 2 levels and capitalize on O 2 -rich opportunities to enhance O 2 utilization by skeletal muscle. © 2018. Published by The Company of Biologists Ltd.

Factors affecting numbers of Culicoides in truck traps in coastal Queensland.

PubMed

Kettle, D S; Edwards, P B; Barnes, A

1998-10-01

Truck trap collections of Ceratopogonidae were made over a period of 27 months (November 1973-February 1976) at Tingalpa Creek, in southeast Queensland, Australia. Six collections were made on each of 95 days, giving 570 observations and a total of 29,378 Culicoides. Two collections were made before, one at, and three after sunset. Separate analyses were made of the catches of thirteen entities: male and female C. austropalpalis, C. brevitarsis, C. marksi, C. marmoratus and C. victoriae, female C. henryi and C. longior, and total C. bundyensis. Catches were dominated by C. brevitarsis (35.2%) and C. marmoratus (32.3%) and, with C. victoriae, were taken on almost every collecting day over all seasons. Sex ratios (M:F) varied from 0:100 for C. longior to 130:100 for C. marksi. Collections of all entities, except female C. henryi, were greatest (50-70% of the daily catch) at sunset. In winter there was substantial activity in the hour before sunset. Time of day was the most important variable, accounting for 15-45% of the observed variation. Between-day differences were significant for all except C. austropalpalis, C. victoriae and male C. marksi. Culicoides brevitarsis, C. bundyensis and C. longior had highly significant annual cycles, C. victoriae and female C. austropalpalis had significant lunar cycles, and C. longior had a significant tidal cycle. Logarithms of catches of female C. austropalpalis, C. brevitarsis, C. henryi, C. marmoratus, and female and male C. victoriae were inversely related to linear wind speed. Log catches of female C. austropalpalis, C. brevitarsis, C. marmoratus and C. victoriae, and male C. marksi and C. victoriae were positively related to temperature (quadratic).

Comparative cytogenetics of Physalaemus albifrons and Physalaemus cuvieri species groups (Anura, Leptodactylidae).

PubMed

Vittorazzi, Stenio Eder; Quinderé, Yeda Rumi Serra Douglas; Recco-Pimentel, Shirlei Maria; Tomatis, Cristian; Baldo, Diego; Lima, Janaina Reis Ferreira; Ferro, Juan Martín; Lima, Jucivaldo Dias; Lourenço, Luciana Bolsoni

2014-01-01

Recently, Physalaemus albifrons (Spix, 1824) was relocated from the Physalaemus cuvieri group to the same group as Physalaemus biligonigerus (Cope, 1861), Physalaemus marmoratus (Reinhardt & Lütken, 1862) and Physalaemus santafecinus Barrio, 1965. To contribute to the analysis of this proposition, we studied the karyotypes of Physalaemus albifrons, Physalaemus santafecinus and three species of the Physalaemus cuvieri group. The karyotype of Physalaemus santafecinus was found to be very similar to those of Physalaemus biligonigerus and Physalaemus marmoratus, which were previously described. A remarkable characteristic that these three species share is a conspicuous C-band that extends from the pericentromeric region almost to the telomere in the short arm of chromosome 3. This characteristic is not present in the Physalaemus albifrons karyotype and could be a synapomorphy of Physalaemus biligonigerus, Physalaemus marmoratus and Physalaemus santafecinus. The karyotype of Physalaemus santafecinus is also similar to those of Physalaemus marmoratus and Physalaemus biligonigerus owing to the presence of several terminal C-bands and the distal localization of the NOR in a small metacentric chromosome. In contrast, the Physalaemus albifrons karyotype has no terminal C-bands and its NOR is located interstitially in the long arm of submetacentric chromosome 8. The NOR-bearing chromosome of Physalaemus albifrons very closely resembles those found in Physalaemus albonotatus (Steindachner, 1864), Physalaemus cuqui Lobo, 1993 and some populations of Physalaemus cuvieri Fitzinger, 1826. Additionally, the Physalaemus albifrons karyotype has an interstitial C-band in chromosome 5 that has been exclusively observed in species of the Physalaemus cuvieri group. Therefore, we were not able to identify any chromosomal feature that supports the reallocation of Physalaemus albifrons.

Comparative cytogenetics of Physalaemus albifrons and Physalaemus cuvieri species groups (Anura, Leptodactylidae)

PubMed Central

Vittorazzi, Stenio Eder; Quinderé*, Yeda Rumi Serra Douglas; Recco-Pimentel, Shirlei Maria; Tomatis, Cristian; Baldo, Diego; Lima, Janaina Reis Ferreira; Ferro, Juan Martín; Lima, Jucivaldo Dias; Lourenço, Luciana Bolsoni

2014-01-01

Abstract Recently, Physalaemus albifrons (Spix, 1824) was relocated from the Physalaemus cuvieri group to the same group as Physalaemus biligonigerus (Cope, 1861), Physalaemus marmoratus (Reinhardt & Lütken, 1862) and Physalaemus santafecinus Barrio, 1965. To contribute to the analysis of this proposition, we studied the karyotypes of Physalaemus albifrons, Physalaemus santafecinus and three species of the Physalaemus cuvieri group. The karyotype of Physalaemus santafecinus was found to be very similar to those of Physalaemus biligonigerus and Physalaemus marmoratus, which were previously described. A remarkable characteristic that these three species share is a conspicuous C-band that extends from the pericentromeric region almost to the telomere in the short arm of chromosome 3. This characteristic is not present in the Physalaemus albifrons karyotype and could be a synapomorphy of Physalaemus biligonigerus, Physalaemus marmoratus and Physalaemus santafecinus. The karyotype of Physalaemus santafecinus is also similar to those of Physalaemus marmoratus and Physalaemus biligonigerus owing to the presence of several terminal C-bands and the distal localization of the NOR in a small metacentric chromosome. In contrast, the Physalaemus albifrons karyotype has no terminal C-bands and its NOR is located interstitially in the long arm of submetacentric chromosome 8. The NOR-bearing chromosome of Physalaemus albifrons very closely resembles those found in Physalaemus albonotatus (Steindachner, 1864), Physalaemus cuqui Lobo, 1993 and some populations of Physalaemus cuvieri Fitzinger, 1826. Additionally, the Physalaemus albifrons karyotype has an interstitial C-band in chromosome 5 that has been exclusively observed in species of the Physalaemus cuvieri group. Therefore, we were not able to identify any chromosomal feature that supports the reallocation of Physalaemus albifrons. PMID:25147623

Karyotypic similarities between two species of Rhamphichthys (Rhamphichthyidae, Gymnotiformes) from the Amazon basin

PubMed Central

da Silva, Patrícia Corrêa; Nagamachi, Cleusa Yoshiko; Silva, Danillo dos Santos; Milhomem, Susana Suely Rodrigues; Cardoso, Adauto Lima; de Oliveira, Jonas Alves; Pieczarka, Julio Cesar

2013-01-01

Abstract The family Rhamphichthyidae includes three genera: Rhamphichthys Müller et Troschel, 1846, Gymnorhamphichthys M. M. Ellis, 1912 and Iracema Triques, 1996. From this family, only the species Rhamphichthys hanni Meinken, 1937 has had its karyotype described. Here, we describe the karyotypes of two additional Rhamphichthys species: Rhamphichthys marmoratus Castelnau, 1855 from the Reserva de Desenvolvimento Sustentável Mamirauá, Amazonas state and Rhamphichthys prope rostratus Linnaeus, 1766 from Pará state, both in Brazil. Our karyotypic analyses demonstrated that the diploid number is conserved for the genus (2n = 50), but the karyotypic formulas (KFs) differed between Rhamphichthys marmoratus (44m/sm+6a) and Rhamphichthys prope rostratus (42m/sm+8a). In both species, the constitutive heterochromatin (CH) was located in the centromeric region of most chromosomes. Large heterochromatic blocks were found on the long arms of pairs 4 and 14 in Rhamphichthys marmoratus and on chromosomes 3, 4 and 19 in Rhamphichthys prope rostratus, which also has a heteromorphism in chromosome pair 1. The CH was DAPI positive, indicating that it is rich in AT base pairs. The Nucleolus Organizer Region (NOR) showed staining at a single location in both species: the long arm of pair 1 in Rhamphichthys marmoratus and the long arm of pair 12 in Rhamphichthys prope rostratus, where it showed a size heteromorphism. CMA3 staining coincided with that of Ag-NOR, indicating that the ribosomal genes contain interspaced GC-rich sequences. FISH with an 18S rDNA probe confirmed that there is only one NOR site in each species. These results can be used as potential cytogenetic markers for fish populations, and comparative analysis of the karyotypes of Hypopygus Hoedman, 1962, Rhamphichthys and Steatogenys Boulenger, 1898 suggests that the first two genera diverged later that the third. PMID:24455102

Phylogeny and diversity of neotropical monkey lizards (Iguanidae: Polychrus Cuvier, 1817).

PubMed

Torres-Carvajal, Omar; Koch, Claudia; Venegas, Pablo J; Poe, Steve

2017-01-01

Neotropical monkey lizards (Polychrus) are arboreal lizards with compressed bodies, partially fused eyelids and strikingly long, whip-like tails. The eight currently recognized species occur in the lowlands of South and Central America. Based on the largest taxon and character sampling to date, we analyze three mitochondrial and one nuclear gene using Bayesian methods to (1) infer the phylogeny of Polychrus under both concatenated-tree and species-tree methods; (2) identify lineages that could represent putative undescribed species; and (3) estimate divergence times. Our species tree places P. acutirostris as the sister taxon to all other species of Polychrus. While the phylogenetic position of P. gutturosus and P. peruvianus is poorly resolved, P. marmoratus and P. femoralis are strongly supported as sister to P. liogaster and P. jacquelinae, respectively. Recognition of P. auduboni and P. marmoratus sensu stricto as distinct species indicates that the populations of "P. marmoratus" from the Amazon and the Atlantic coast in Brazil represent separate species. Similarly, populations of P. femoralis from the Tumbes region might belong to a cryptic undescribed species. Relative divergence times and published age estimates suggest that the orogeny of the Andes did not play a significant role in the early evolution of Polychrus.

Phylogeny and diversity of neotropical monkey lizards (Iguanidae: Polychrus Cuvier, 1817)

PubMed Central

Venegas, Pablo J.; Poe, Steve

2017-01-01

Neotropical monkey lizards (Polychrus) are arboreal lizards with compressed bodies, partially fused eyelids and strikingly long, whip-like tails. The eight currently recognized species occur in the lowlands of South and Central America. Based on the largest taxon and character sampling to date, we analyze three mitochondrial and one nuclear gene using Bayesian methods to (1) infer the phylogeny of Polychrus under both concatenated-tree and species-tree methods; (2) identify lineages that could represent putative undescribed species; and (3) estimate divergence times. Our species tree places P. acutirostris as the sister taxon to all other species of Polychrus. While the phylogenetic position of P. gutturosus and P. peruvianus is poorly resolved, P. marmoratus and P. femoralis are strongly supported as sister to P. liogaster and P. jacquelinae, respectively. Recognition of P. auduboni and P. marmoratus sensu stricto as distinct species indicates that the populations of "P. marmoratus" from the Amazon and the Atlantic coast in Brazil represent separate species. Similarly, populations of P. femoralis from the Tumbes region might belong to a cryptic undescribed species. Relative divergence times and published age estimates suggest that the orogeny of the Andes did not play a significant role in the early evolution of Polychrus. PMID:28570575

Status review of the Marbled Murrelet (Brachyramphus marmoratus) in Alaska and British Columbia

USGS Publications Warehouse

Piatt, John F.; Kuletz, K.J.; Burger, A.E.; Hatch, Shyla A.; Friesen, Vicki L.; Birt, T.P.; Arimitsu, Mayumi L.; Drew, G.S.; Harding, A.M.A.; Bixler, K.S.

2007-01-01

The Marbled Murrelet (Brachyramphus marmoratus) is a small, diving seabird inhabiting inshore waters of the Northeastern Pacific Ocean. This species feeds on small, schooling fishes and zooplankton, and nests primarily on the moss-covered branches of large, old-growth conifers, and also, in some parts of its range, on the ground. We reviewed existing information on this species to evaluate its current status in the northern part of its range-Alaska (U.S.) and British Columbia (Canada). Within the southern part of its range (Washington, Oregon, and California, U.S.), the Marbled Murrelet was listed as a threatened species under the Endangered Species Act (ESA) in 1993, and the U.S. Fish and Wildlife Service (USFWS) needed information on the species throughout its range for ESA deliberations. We compiled published information on the conservation status, population biology, foraging ecology, population genetics, population status and trends, demography, marine and nesting habitat characteristics, threats, and ongoing conservation efforts for Marbled Murrelets in Alaska and British Columbia. We conducted a new genetic study using samples from a segment of the range that had not been included in previous studies (Washington, Oregon) and additional nuclear intron and microsatellite markers. We also analyzed available at-sea survey data from several locations for trend. To understand the reasonableness of the empirical trend data, we developed demographic models incorporating stochasticity to discern what population trends were possible by chance. The genetic studies substantially confirmed previous findings on population structure in the Marbled Murrelet. Our present work finds three populations: (1) one comprising birds in the central and western Aleutian Islands; (2) one comprising birds in central California; and (3) one comprising birds within the center of the range from the eastern Aleutians to northern California. Our knowledge of genetic structure within this

Stabilization of a salamander moving hybrid zone.

PubMed

Visser, Michaël; de Leeuw, Maarten; Zuiderwijk, Annie; Arntzen, Jan W

2017-01-01

When related species meet upon postglacial range expansion, hybrid zones are frequently formed. Theory predicts that such zones may move over the landscape until equilibrium conditions are reached. One hybrid zone observed to be moving in historical times (1950-1979) is that of the pond-breeding salamanders Triturus cristatus and Triturus marmoratus in western France. We identified the ecological correlates of the species hybrid zone as elevation, forestation, and hedgerows favoring the more terrestrial T. marmoratus and pond density favoring the more aquatic T. cristatus . The past movement of the zone of ca. 30 km over three decades has probably been driven by the drastic postwar reduction of the "bocage" hedgerow landscape, favoring T. cristatus over T. marmoratus . No further hybrid zone movement was observed from 1979 to the present. To explain the changing dynamics of the hybrid zone, we propose that it stalled, either because an equilibrium was found at an altitude of ca. 140 m a.s.l. or due to pond loss and decreased population densities. While we cannot rule out the former explanation, we found support for the latter. Under agricultural intensification, ponds in the study area are lost at an unprecedented rate of 5.5% per year, so that remaining Triturus populations are increasingly isolated, hampering dispersal and further hybrid zone movement.

Evidence from cytochrome b sequences and allozymes for a new species of alcid: The long-billed murrelet (Brachyramphus perdix)

USGS Publications Warehouse

Friesen, Vicki L.; Piatt, John F.; Baker, Allan J.

1996-01-01

Marbled Murrelets (Brachyramphus marmoratus) are coastal seabirds that breed predominantly in old-growth forest throughout the North Pacific. Presently they are classified into two phenotypically distinct subspecies: one in North America (B. m. marmoratus) and one in Asia (B. m. perdix). The Asian form was classified as a separate species in 1811, but was lumped with B. marmoratus during the 20th century. Populations of both types are considered threatened or endangered and information about the extent of genetic differentiation among birds from different sites is required for their conservation. We compared variation in 1,045 base pairs of the mitochondrial cytochrome b gene and 39 allozyme loci among Marbled Murrelets and the closely related Kittlitz's Murrelets (B. brevirostris) from throughout the North Pacific. All analyses indicted that North American and Asian Marbled Murrelets are genetically distinct: cytochrome b sequences were highly divergent, fixed allele differences occurred at two allozyme loci, and estimated gene flow was essentially zero. Phylogenetic analyses of cytochrome b sequences and allozymes both provided strong support for a monophyletic relationship among North American Marbled Murrelets and Kittlitz's Murrelets, with Long-billed Murrelets forming the basal lineage. Long-billed and North American Marbled Murrelets clearly represent distinct species by any definition, and must be managed independently. Significant genetic differentiation also was found among both Marbled and Kittlitz's Murrelets from different sites within North America.

Changes in metallothionein concentrations in response to variation in natural factors (salinity, sex, weight) and metal contamination in crabs from a metal-rich estuary.

PubMed

Legras; Mouneyrac; Amiard; Amiard-Triquet; Rainbow

2000-04-05

Intermoult male and female crabs Pachygrapsus marmoratus and Carcinus maenas were sampled from three sites between the mouth and 25 km upstream in the Gironde, the most Cd-contaminated estuary in France, in order to study the relative importance of natural factors (salinity, sex, weight) and accumulated metal concentrations on metallothionein (MT) concentrations. In the two species studied, higher metal, total protein and MT concentrations were observed in the hepatopancreas than in the gills. In P. marmoratus, MT concentrations were mainly related to changes in the natural factors even if MT and Zn concentrations were positively correlated in the hepatopancreas whereas in C. maenas, the main relationships were with accumulated metal levels. In the case of the natural factors, the most important ones were weight in gills of both crab species, and salinity changes in both hepatopancreas and gills of P. marmoratus. Cd and Cu concentrations in both organs of the two species were inversely related to salinity. The same observation was found for Zn concentrations in C. maenas but not in P. marmoratus. In the hepatopancreas of both species, the highest total protein concentrations were found in crabs from the site with the highest salinity, whereas there were no such differences in the gills. It seems that changes in MT concentrations are linked more to changes in general protein metabolism than to changes in metal accumulation. Thus it was important to examine the storage of metals in other tissue compartments, particularly the insoluble fraction which includes mineral granules which is known to also contribute to trace metal detoxification in invertebrates. In the gills of the crabs, Zn was present mainly in the insoluble fraction, whereas Cd was nearly equally distributed between soluble and insoluble fractions. In contrast, Cu in the gills and all three metals in the hepatopancreas of both species were mainly cytosolic, but this does not necessarily imply a

Whole-genome sequencing reveals the extent of heterozygosity in a preferentially self-fertilizing hermaphroditic vertebrate.

PubMed

Lins, Luana S F; Trojahn, Shawn; Sockell, Alexandra; Yee, Muh-Ching; Tatarenkov, Andrey; Bustamante, Carlos D; Earley, Ryan L; Kelley, Joanna L

2018-04-01

The mangrove rivulus, Kryptolebias marmoratus, is one of only two self-fertilizing hermaphroditic fish species and inhabits mangrove forests. While selfing can be advantageous, it reduces heterozygosity and decreases genetic diversity. Studies using microsatellites found that there are variable levels of selfing among populations of K. marmoratus, but overall, there is a low rate of outcrossing and, therefore, low heterozygosity. In this study, we used whole-genome data to assess the levels of heterozygosity in different lineages of the mangrove rivulus and infer the phylogenetic relationships among those lineages. We sequenced whole genomes from 15 lineages that were completely homozygous at microsatellite loci and used single nucleotide polymorphisms (SNPs) to determine heterozygosity levels. More variation was uncovered than in studies using microsatellite data because of the resolution of full genome sequencing data. Moreover, missense polymorphisms were found most often in genes associated with immune function and reproduction. Inferred phylogenetic relationships suggest that lineages largely group by their geographic distribution. The use of whole-genome data provided further insight into genetic diversity in this unique species. Although this study was limited by the number of lineages that were available, these data suggest that there is previously undescribed variation within lineages of K. marmoratus that could have functional consequences and (or) inform us about the limits to selfing (e.g., genetic load, accumulation of deleterious mutations) and selection that might favor the maintenance of heterozygosity. These results highlight the need to sequence additional individuals within and among lineages.

Cytogenetic analyses of eight species in the genus Leptodactylus Fitzinger, 1843 (Amphibia, Anura, Leptodactylidae), including a new diploid number and a karyotype with multiple translocations.

PubMed

Gazoni, Thiago; Gruber, Simone L; Silva, Ana P Z; Araújo, Olivia G S; Narimatsu, Hideki; Strüssmann, Christine; Haddad, Célio F B; Kasahara, Sanae

2012-12-26

The karyotypes of Leptodactylus species usually consist of 22 bi-armed chromosomes, but morphological variations in some chromosomes and even differences in the 2n have been reported. To better understand the mechanisms responsible for these differences, eight species were analysed using classical and molecular cytogenetic techniques, including replication banding with BrdU incorporation. Distinct chromosome numbers were found: 2n = 22 in Leptodactylus chaquensis, L. labyrinthicus, L. pentadactylus, L. petersii, L. podicipinus, and L. rhodomystax; 2n = 20 in Leptodactylus sp. (aff. podicipinus); and 2n = 24 in L. marmoratus. Among the species with 2n = 22, only three had the same basic karyotype. Leptodactylus pentadactylus presented multiple translocations, L. petersii displayed chromosome morphological discrepancy, and L. podicipinus had four pairs of telocentric chromosomes. Replication banding was crucial for characterising this variability and for explaining the reduced 2n in Leptodactylus sp. (aff. podicipinus). Leptodactylus marmoratus had few chromosomes with a similar banding patterns to the 2n = 22 karyotypes. The majority of the species presented a single NOR-bearing pair, which was confirmed using Ag-impregnation and FISH with an rDNA probe. In general, the NOR-bearing chromosomes corresponded to chromosome 8, but NORs were found on chromosome 3 or 4 in some species. Leptodactylus marmoratus had NORs on chromosome pairs 6 and 8. The data from C-banding, fluorochrome staining, and FISH using the telomeric probe helped in characterising the repetitive sequences. Even though hybridisation did occur on the chromosome ends, telomere-like repetitive sequences outside of the telomere region were identified. Metaphase I cells from L. pentadactylus confirmed its complex karyotype constitution because 12 chromosomes appeared as ring-shaped chain in addition to five bivalents. Species of Leptodactylus exhibited both major and minor karyotypic differences which

Cytogenetic analyses of eight species in the genus Leptodactylus Fitzinger, 1843 (Amphibia, Anura, Leptodactylidae), including a new diploid number and a karyotype with multiple translocations

PubMed Central

2012-01-01

Background The karyotypes of Leptodactylus species usually consist of 22 bi-armed chromosomes, but morphological variations in some chromosomes and even differences in the 2n have been reported. To better understand the mechanisms responsible for these differences, eight species were analysed using classical and molecular cytogenetic techniques, including replication banding with BrdU incorporation. Results Distinct chromosome numbers were found: 2n = 22 in Leptodactylus chaquensis, L. labyrinthicus, L. pentadactylus, L. petersii, L. podicipinus, and L. rhodomystax; 2n = 20 in Leptodactylus sp. (aff. podicipinus); and 2n = 24 in L. marmoratus. Among the species with 2n = 22, only three had the same basic karyotype. Leptodactylus pentadactylus presented multiple translocations, L. petersii displayed chromosome morphological discrepancy, and L. podicipinus had four pairs of telocentric chromosomes. Replication banding was crucial for characterising this variability and for explaining the reduced 2n in Leptodactylus sp. (aff. podicipinus). Leptodactylus marmoratus had few chromosomes with a similar banding patterns to the 2n = 22 karyotypes. The majority of the species presented a single NOR-bearing pair, which was confirmed using Ag-impregnation and FISH with an rDNA probe. In general, the NOR-bearing chromosomes corresponded to chromosome 8, but NORs were found on chromosome 3 or 4 in some species. Leptodactylus marmoratus had NORs on chromosome pairs 6 and 8. The data from C-banding, fluorochrome staining, and FISH using the telomeric probe helped in characterising the repetitive sequences. Even though hybridisation did occur on the chromosome ends, telomere-like repetitive sequences outside of the telomere region were identified. Metaphase I cells from L. pentadactylus confirmed its complex karyotype constitution because 12 chromosomes appeared as ring-shaped chain in addition to five bivalents. Conclusions Species of Leptodactylus exhibited both major and minor

Chapter 19: Marbled Murrelet Habitat Associations in Oregon

Treesearch

Jeffrey J. Grenier; S. Kim Nelson

1995-01-01

We described habitat associations of Marbled Murrelet (Brachyramphus marmoratus) nesting (n = 10) and occupied (n = 184) sites in Oregon. We compared habitat characteristics of 177 occupied sites to a random sample of 9,625 sites (n = 531) of unknown murrelet status. In addition, we briefly...

Chapter 5: Nesting Biology and Behavior of the Marbled Murrelet

Treesearch

S. Kim Nelson; Thomas E. Hamer

1995-01-01

We summarize courtship, incubation, feeding, fledging, and flight behavior of Marbled Murrelets (Brachyramphus marmoratus) using information collected at 24 nest sites in North America. Chick development, vocalizations given by adults and chicks at the nest, and predator avoidance behaviors are also described. Marbled Murrelets initiate nesting as...

Meeting reproductive demands in a dynamic upwelling system: foraging strategies of a pursuit-diving seabird, the marbled murrelet

Treesearch

M. Zachariah Peery; Scott H. Newman; Curt D. Storlazzi; Steven R. Beissinger

2009-01-01

Seabirds maintain plasticity in their foraging behavior to cope with energy demands and foraging constraints that vary over the reproductive cycle, but behavioral studies comparing breeding and nonbreeding individuals are rare. Here we characterize how Marbled Murrelets (Brachyramphus marmoratus) adjust their foraging effort in response to changes...

Chapter 17: Inland Habitat Associations of Marbled Murrelets in Western Washington

Treesearch

Thomas E. Hamer

1995-01-01

Little research has been done to quantify and describe the structural characteristics of forest stands that are associated with Marbled Murrelet (Brachyramphus marmoratus) nesting in the Pacific Northwest. Vegetation measurements and murrelet surveys to determine occupancy were conducted in stands located throughout western Washington. I used...

Low breeding propensity and wide-ranging movements by marbled murrelets in Washington

Treesearch

Teresa J. Lorenz; Martin G. Raphael; Thomas D. Bloxton; Patrick G. Cunningham

2016-01-01

The marbled murrelet (Brachyramphus marmoratus) is a threatened seabird that forages in nearshore marine waters but nests inland, commonly in older coniferous forests. Information on ranging behavior and breeding propensity can be useful for informing management, especially when comparisons can be made between declining or threatened populations...

Amphibious fish jump better on land after acclimation to a terrestrial environment.

PubMed

Brunt, Emily M; Turko, Andy J; Scott, Graham R; Wright, Patricia A

2016-10-15

Air and water differ dramatically in density and viscosity, posing different biomechanical challenges for animal locomotion. We asked how terrestrial acclimation influences locomotion in amphibious fish, specifically testing the hypothesis that terrestrial tail flip performance is improved by plastic changes in the skeletal muscle. Mangrove rivulus Kryptolebias marmoratus, which remain largely inactive out of water, were exposed to water or air for 14 days and a subgroup of air-exposed fish was also recovered in water. Tail flip jumping performance on land improved dramatically in air-acclimated fish, they had lower lactate levels compared with control fish, and these effects were mostly reversible. Muscle plasticity significantly increased oxidative muscle cross-sectional area and fibre size, as well as the number of capillaries per fibre. Our results show that reversible changes to the oxidative skeletal muscle of K. marmoratus out of water enhance terrestrial locomotory performance, even in the absence of exercise training. © 2016. Published by The Company of Biologists Ltd.

A new method for ageing Marbled Murrelets and the effect on productivity estimates

Treesearch

L.L. Long; C.J. Ralph; S. Miller

2001-01-01

Accurate knowledge of the number of newly-fledged juveniles offshore is critical to estimates of productivity of the threatened Marbled Murrelet (Brachyramphus marmoratus). We describe a method for collecting productivity data which allows researchers to objectively evaluate age determinations and their effect on juvenile percentages. This has the...

Stand-scale habitat associations across a large geographic region of an old-growth specialist, the marbled murrelet

Treesearch

Carolyn B. Meyer; Sherri L. Miller; C. John Ralph

2004-01-01

We used two metrics, occupancy and relative abundance, to study forest stand characteristics believed to be important to a threatened seabird that nests in old-growth forests, the Marbled Murrelet (Brachyramphus marmoratus). Occupancy refers to murrelet presence or absence based on observed bird behaviors, while relative abundance refers to...

Chapter 22: Marbled Murrelet Food Habits and Prey Ecology

Treesearch

Esther E. Burkett

1995-01-01

Information on food habits of the Marbled Murrelet (Brachyramphus marmoratus) was compiled from systematic studies and anecdotal reports from Alaska to California. Major differences between the winter and summer diets were apparent, with euphausiids and mysids becoming more dominant during winter and spring. The primary invertebrate prey items were...

Northwest Forest Plan—the first 15 years (1994–2008): status and trend of nesting habitat for the marbled murrelet

Treesearch

Martin G. Raphael; Gary A. Falxa; Katie M. Dugger; Beth M. Galleher; Deanna Lynch; Sherri L. Miller; S. Kim Nelson; Richard D. Young

2011-01-01

The primary objectives of the effectiveness monitoring plan for the marbled murrelet (Brachyramphus marmoratus) include mapping baseline nesting habitat (at the start of the Northwest Forest Plan [the Plan]) and estimating changes in that habitat over time. Using vegetation data derived from satellite imagery, we modeled habitat suitability by...

Regional population monitoring of the marbled murrelet: field and analytical methods.

Treesearch

Martin G. Raphael; Jim Baldwin; Gary A. Falxa; Mark H. Huff; Monique Lance; Sherri L. Miller; Scott F. Pearson; C. John Ralph; Craig Strong; Chris Thompson

2007-01-01

The marbled murrelet (Brachyramphus marmoratus) ranges from Alaska to California and is listed under the Endangered Species Act as a threatened species in Washington, Oregon, and California. Marbled murrelet recovery depends, in large part, on conservation and restoration of breeding habitat on federally managed lands. A major objective of the...

Chapter 16: Inland Habitat Associations of Marbled Murrelets in British Columbia

Treesearch

Alan E. Burger

1995-01-01

Most Marbled Murrelets (Brachyramphus marmoratus) in British Columbia nest in the Coastal Western Hemlock biogeoclimatic zone. In this zone, detection frequencies were highest in the moister ecosections and in low elevation forests. Nests and moderately high levels of activity were also found in some forest patches in the subalpine Mountain Hemlock...

Status of the Marbled Murrelet in the inner north coast ranges of California

Treesearch

John E. Hunter; Kristin N. Schmidt; Howard B. Stauffer; Sherri L. Miller; C. John Ralph; Lynn Roberts

1998-01-01

We sought to determine the presence or absence of marbled murrelets (Brachyramphus marmoratus) within the northern Inner North Coast Ranges of northwestern California. We conducted murrelet surveys and collected environmental data during 1995 and 1996 on national forest lands that were south of the Klamath Mountains Section and within B....

Nesting habitat characteristics of Marbled Murrelets occurring in near-shore waters of the Olympic Peninsula, Washington

Treesearch

Randall J. Wilk; Martin G. Raphael; Thomas D. Bloxton

2016-01-01

Marbled Murrelets (Brachyramphus marmoratus) are listed as threatened in the portion of their range extending from British Columbia to California due to loss of nesting habitat. Recovery of Marbled Murrelet populations requires a better understanding of the characteristics of their nesting habitat in this part of their range. Our objective,...

Surveying marbled murrelets at inland forested sites: a guide

Treesearch

Peter W.C. Paton; C. John Ralph; Harry R. Carter; S. Kim Nelson

1990-01-01

The marbled murrelet (Brachyramphus marmoratus), a seabird, nests in forested stands from southeast Alaska south to Santa Cruz, California. Because of this species' close association with old-growth forests, researchers and land managers need a method to assess murrelet distribution and use patterns throughout its range. This guide describes a...

Chapter 6: Other species and biodiversity of older forests

Treesearch

Bruce G. Marcot; Karen L. Pope; Keith Slauson; Hartwell H. Welsh; Clara A. Wheeler; Matthew J. Reilly; William J. Zielinski

2018-01-01

This chapter focuses mostly on terrestrial conditions of species and biodiversity associated with late-successional and old-growth forests in the area of the Northwest Forest Plan (NWFP). We do not address the northern spotted owl (Strix occidentalis caurina) or marbled murrelet (Brachyramphus marmoratus)—those species and...

Chapter 24: Monospecific and Mixed Species Foraging Associations of Marbled Murrelets

Treesearch

C. John In: Ralph; George L. Hunt; Martin G. Raphael; John Hunt Piatt

1995-01-01

Marbled Murrelets (Brachyramphus marmoratus) vary in the frequency with which they are associated with mixed species foraging flocks of seabirds. When foraging in the exposed waters of the outer coasts, murrelets are almost invariably found in pairs or small monospecific flocks. In protected waters, they are frequently associated with other species....

Northwest Forest Plan—the first 10 years (1994-2003): status and trends of populations and nesting habitat for the marbled murrelet.

Treesearch

Mark H. Huff; Martin G. Raphael; Sherri L. Miller; S. Kim Nelson; Jim Baldwin

2006-01-01

The Northwest Forest Plan (the Plan) is a large-scale ecosystem management plan for federal land in the Pacific Northwest. Marbled murrelet (Brachyramphus marmoratus) populations and habitat were monitored to evaluate effectiveness of the Plan. The chapters in this volume summarize information on marbled murrelet ecology and present the monitoring...

Northwest Forest Plan—the first 20 years (1994–2013): status and trend of marbled murrelet populations and nesting habitat

Treesearch

Gary A. Falxa; Martin G. Raphael

2016-01-01

A conservation goal of the Northwest Forest Plan (NWFP) is to stabilize and increase marbled murrelet (Brachyramphus marmoratus) populations by maintaining and increasing nesting habitat. We monitored murrelet populations offshore of the NWFP area from 2000 to 2013 to estimate population size and trend at several spatial scales. At the...

Chapter 15: Inland Habitat Suitability for the Marbled Murrelet in Southcentral Alaska

Treesearch

Katherine J. Kuletz; Dennis K. Marks; Nancy L. Naslund; Nike J. Goodson; Mary B. Cody

1995-01-01

The majority of Marbled Murrelets (Brachyramphus marmoratus) nest in Alaska, where they sometimes nest on the ground, and their nesting habitat requirements are not well understood. The inland activity of murrelets was surveyed, and habitat features measured, between 1991 and 1993, in Prince William Sound, Kenai Fjords National Park and Afognak...

Conservation of the marbled murrelet under the northwest forest plan.

Treesearch

Martin G. Raphael

2006-01-01

The Marbled Murrelet (Brachyramphus marmoratus) was listed as threatened in 1992, primarily because of loss of its old-forest nesting habitat. Monitoring conducted over the first 10 years following implementation of the Northwest Forest Plan shows at-sea murrelet populations appear to be stationary, but recruitment is very low and demographic...

Chapter 26: Mortality of Marbled Murrelets Due to Oil Pollution in North America

Treesearch

Harry R. Carter; Katherine J. Kuletz

1995-01-01

Mortality of Marbled Murrelets (Brachyramphus marmoratus) due to oil pollution is one of the major threats to murrelet populations. Mortality from large spills and chronic oil pollution has been occurring for several decades but has been documented poorly throughout their range; it probably has contributed to declines in populations, in conjunction...

Declining Marbled Murrelet density, but not productivity, in the San Juan Islands, Washington, USA

Treesearch

Teresa J. Lorenz; Martin G. Raphael

2018-01-01

The Marbled Murrelet (Brachyramphus marmoratus) is federally threatened in part of its range in western North America. Information on density and productivity is important for managing populations. Over an 18-yr period, we monitored murrelet density and productivity ratios during the breeding season along 170 km of shoreline of the San Juan Islands...

Chapter 10: Marbled Murrelet Inland Patterns of Activity: Defining Detections and Behavior

Treesearch

Peter W.C. Paton

1995-01-01

This chapter summarizes terminology and methodology used by Marbled Murrelet (Brachyramphus marmoratus) biologists when surveying inland forests. Information is included on the types of behaviors used to determine if murrelets may be nesting in an area, and the various types of detections used to quantify murrelet use of forest stands. Problems with...

Chapter 27: Mortality of Marbled Murrelets in Gill Nets in North America

Treesearch

Harry R. Carter; Michael L.C. McAllister; M.E. Pete Isleib

1995-01-01

Mortality of Marbled Murrelets (Brachyramphus marmoratus) due to accidental capture in gill nets is one of the major threats to murrelet populations. Gill-net mortality of murrelets throughout their range has been occurring for several decades and probably has contributed to declines in populations, in conjunction with loss of nesting habitat and...

Logistic regression accuracy across different spatial and temporal scales for a wide-ranging species, the marbled murrelet

Treesearch

Carolyn B. Meyer; Sherri L. Miller; C. John Ralph

2004-01-01

The scale at which habitat variables are measured affects the accuracy of resource selection functions in predicting animal use of sites. We used logistic regression models for a wide-ranging species, the marbled murrelet, (Brachyramphus marmoratus) in a large region in California to address how much changing the spatial or temporal scale of...

A review of the effects of station placement and observer bias in detections of marbled murrelets in forest stands

Treesearch

Brian P. O’Donnel

1995-01-01

A variety of factors influence the results of surveys conducted for Marbled Murrelets (Brachyramphus marmoratus) in the forest. In this paper we examine observer variability and survey station placement as factors influencing murrelet survey data. A training and evaluation protocol (Ralph and others 1993) was developed to insure high field abilities and comparability...

Chapter 34: Offshore Occurrence Patterns of Marbled Murrelets in Central California

Treesearch

David G. Ainley; Sarah G. Allen; Larry B. Spear

1995-01-01

We assessed the occurrence patterns of Marbled Murrelets (Brachyramphus marmoratus) offshore of Waddell Creek, in central California. Data were derived primarily from cruises during the height of the murrelet breeding season, in June, between 1986 and 1994, as well as some cruises during the prebreeding period, February to early April. The large...

Chapter 4: Nesting Chronology of the Marbled Murrelet

Treesearch

Thomas E. Hamer; S. Kim Nelson

1995-01-01

We compiled 86 breeding records of eggs, downy young,and fledgling Marbled Murrelets (Brachyramphus marmoratus) for which the fledging date could be estimated. Records were collected from California (n = 25), Oregon (n = 13), Washington (n = 13), British Columbia (n = 23), and Alaska (n = 12). The number of young fledging increased rapidly from 6...

Recent population decline of the Marbled Murrelet in the Pacific Northwest

Treesearch

Sherri L. Miller; Martin G. Raphael; Gary A. Falxa; Craig Strong; Jim Baldwin; Thomas Bloxton; Beth M. Galleher; Monique Lance; Deanna Lynch; Scott F. Pearson; C. John Ralph; Richard D. Young

2012-01-01

We document here a decline of nearly 30% in the Marbled Murrelet (Brachyramphus marmoratus) population of Washington, Oregon, and northern California between 2000 and 2010. The Northwest Forest Plan is an ecosystem-management plan for federal forest lands in the Pacific Northwest of the United States that incorporates monitoring to determine if...

Chapter 21: Oceanographic Processes and Marine Productivity in Waters Offshore of Marbled Murrelet Breeding Habitat

Treesearch

Jr. Hunt

1995-01-01

Marbled Murrelets (Brachyramphus marmoratus) occupy nearshore waters in the eastern North Pacific Ocean from central California to the Aleutian Islands. The offshore marine ecology of these waters is dominated by a series of currents roughly parallel to the coast that determine marine productivity of shelf waters by influencing the rate of nutrient...

Chapter 36: Status of Forest Habitat of the Marbled Murrelet

Treesearch

David A. Perry

1995-01-01

Marbled Murrelets (Brachyramphus marmoratus) have been shown to be dependant upon old-growth forests for nesting habitat. These forests have declined over the last century as they are cut for human use. This paper reviews the current status of old-growth forests along the west coast, in both the United States and Canada.

Ecology and conservation of the Marbled Murrelet

Treesearch

C. John Ralph; George L. Hunt; Martin G. Raphael; John F. Piatt

1995-01-01

This report on the Marbled Murrelet (Brachyramphus marmoratus) was compiled and editied by the interagency Marbled Murrelet Conservation Assessment Core Team. The 37 Chapters cover both original studies and literature reviews of many aspects of the species’ biology, ecology, and conservation needs. It includes new information on the forest habitat...

Chapter 11: Patterns of Seasonal Variation of Activity of Marbled Murrelets in Forested Stands

Treesearch

Brian P. O’Donnell; Nancy L. Naslund; C. John Ralph

1995-01-01

Determining the annual cycles of Marbled Murrelet (Brachyramphus marmoratus) behavior is crucial both for understanding the life history and for management of this species. In this paper we review available information on the annual patterns of behavior in forests throughout its range, with special emphasis on California. Data were derived from standardized forest...

Use of radar to study the movements of Marbled Murrelets at inland sites

Treesearch

Thomas E. Hamer; Brian A. Cooper; C. John Ralph

1995-01-01

A modified vehicle-mounted, X-band marine radar system was used to study the movements of marbled murrelets (Brachyramphus marmoratus) at inland and coastal sites in northern California during July. The ability of the radar to discriminate murrelets from other targets, and to estimate abundance was assessed. Murrelets were detected by radar at...

Chapter 6: Characteristics of Marbled Murrelet Nest Trees and Nesting Stands

Treesearch

Thomas E. Hamer; S. Kim Nelson

1995-01-01

We summarize the characteristics of 61 tree nests and nesting stands of the Marbled Murrelet ( Brachyramphus marmoratus ) located from 1974 to 1993 in Alaska, British Columbia, Washington, Oregon, and California. Evidence of breeding 30-60 km inland was common in California, Oregon, and Washington. Nesting greater distances from the coast may have...

Chapter 12: Daily Patterns of Marbled Murrelet Activity at Inland Sites

Treesearch

Nancy L. Naslund; Brian P. O’Donnell

1995-01-01

Patterns in the daily activity of Marbled Murrelets (Brachyramphus marmoratus) at inland sites has been studied throughout their range from California to Alaska. Murrelets are most active at inland sites around dawn, and to a lesser degree, at dusk. Throughout their range, peak levels of activity (detections) occur in the hour around dawn, but...

Habitat associations of marbled murrelets during the nesting season in nearshore waters along the Washington to California coast

Treesearch

Martin G. Raphael; Andrew J. Shirk; Gary A. Falxa; Scott F. Pearson

2015-01-01

The marbled murrelet (Brachyramphus marmoratus) is a seabird in the family Alcidae that forages in nearshore waters of the Pacific Northwest, and nests in adjacent older-forest conifers within 80 km offshore. The species is of conservation concern due to habitat loss and declining numbers, and is listed as Threatened in British Columbia, Canada and...

Use of fragmented landscapes by Marbled Murrelets for nesting in Southern Oregon

Treesearch

C.B. Meyer; S.L. Miller

2002-01-01

As oldgrowth forest becomes more fragmented in the Pacific Northwest (U.S.A.), species dependent on large patches of oldgrowth forest may be at greater risk of extinction. The Marbled Murrelet (Brachyramphus marmoratus), a seabird whose populations are declining in North America, nests in such old-growth forests or forests with large remnant trees....

Chapter 3: Comparative Reproductive Ecology of the Auks (Family Alcidae) with Emphasis on the Marbled Murrelet

Treesearch

Toni L. De Santo; S. Kim Nelson

1995-01-01

Marbled Murrelets (Brachyramphus marmoratus) are comparable to most alcids with respect to many features of their reproductive ecology. Most of the 22 species of alcids are colonial in their nesting habits, most exhibit breeding site, nest site, and mate fidelity, over half lay one egg clutches, and all share duties of incubation and chick rearing...

Chapter 33: Offshore Population Estimates of Marbled Murrelets in California

Treesearch

C. John Ralph; Sherri L. Miller

1995-01-01

We devised a method of estimating population size of Marbled Murrelets (Brachyramphus marmoratus) found in California’s offshore waters. The method involves determining the distribution of birds from the shore outward to 6,000 m offshore. Applying this distribution to data from boat surveys, we derived population estimates and estimates of sampling...

Ranking habitat for Marbled Murrelets: New conservation approach for species with uncertain detection

Treesearch

Howard B. Stauffer; C. John Ralph; Sherri L. Miller

2004-01-01

An essential element in the conservation of rare species is the ranking of some aspects of habitat quality. We developed a method to rank the importance of individual habitat patches to Marbled Murrelets (Brachyramphus marmoratus) in 26 old-growth forest stands in northern California, using estimates of stand occupaqcy as an index of nesting activity...

Evidence of changes in populations of the Marbled Murrelet in the Pacific Northwest

Treesearch

C. John Ralph

1994-01-01

The Marbled Murrelet (Brachyramphus marmoratus) occurs along the coasts of the North Pacific. It is unique among the Alcidae in its tree nesting habits. Recent research has revealed that in forested areas it is closely associated with old-growth coniferous forests, most of which have been harvested over the past 100 years. All historical accounts,...

Chapter 8: Nest Success and the Effects of Predation on Marbled Murrelets

Treesearch

S. Kim Nelson; Thomas E. Hamer

1995-01-01

We summarize available information on Marbled Murrelet (Brachyramphus marmoratus) productivity and sources of mortality compiled from known tree nests in North America. We found that 72 percent (23 of 32) of nests were unsuccessful. Known causes of nest failure included predation of eggs and chicks (n = 10), nest abandonment by adults (n = 4), chicks...

Breeding distribution of the marbled murrelet in Redwood National Park and vicinity during 1988

Treesearch

C. John Ralph; Peter W. C. Paton; Aivars Zakis; Gary Strachan

1990-01-01

We report on an intensive research effort to determine the present status of the marbled murrelet (Brachyramphus marmoratus) in the vicinity of Redwood National Park, in Del Norte and northern Humboldt Counties, California. This seabird is primarily an inhabitant of the nearshore waters and adjacent coastal redwood forests of the northern half of the...

Chapter 29: Marine Distribution, Abundance, and Habitats of Marbled Murrelets in British Columbia

Treesearch

Alan E. Burger

1995-01-01

About 45,000-50,000 Marbled Murrelets (Brachyramphus marmoratus) breed in British Columbia, with some birds found in most parts of the inshore coastline. A review of at-sea surveys at 84 sites revealed major concentrations in summer in six areas. Murrelets tend to leave these breeding areas in winter. Many murrelets overwinter in the Strait of...

Chapter 23: Marbled Murrelet At-Sea and Foraging Behavior

Treesearch

Gary Strachan; Michael McAllister; C. John Ralph

1995-01-01

The behavior of Marbled Murrelets (Brachyramphus marmoratus) at sea while foraging for small fish and invertebrates is poorly known. This murrelet forages by pursuit diving in relatively shallow waters, usually between 20 and 80 meters in depth. We have also observed it diving in waters less than 1 meter and more than 100 meters deep. The majority of...

Chapter 35: Productivity of marbled murrelets in California from observations of young at sea

Treesearch

C. John Ralph; Linda L. Long

1995-01-01

We designed and tested an intensive survey method in 1993 to identify juvenile Marbled Murrelets (Brachyramphus marmoratus) at sea. From this, we used the percent of juveniles seen in the sample as an index of productivity of murrelets along the California coast. We found 2.2 percent of the population sampled were juveniles, similar to our estimates...

Chapter 5: Marbled murrelet

Treesearch

Martin G. Raphael; Gary A. Falxa; Alan E. Burger

2018-01-01

In this chapter, we describe expectations of the Northwest Forest Plan (NWFP, or Plan) and review recent science on the ecology and status of the marbled murrelet (Brachyramphus marmoratus), with an emphasis on the portion of the species’ range that falls within the Plan area. The conservation strategy embodied in the NWFP evolved from designation and protection of a...

[A fish prey found in the coral snake Micrurus alleni (Serpentes: Elapidae) in Costa Rica].

PubMed

Solórzano, Alejandro

2005-01-01

A fish prey found in the coral snake Micrurus alleni (Serpentes: Elapidae) in Costa Rica. The presence of a small specimen of the swamp eel Synbranchus marmoratus (84 mm total length) in the stomach contents of an adult coral snake Micrurus alleni with 692 mm total length from the Caribbean versant of Costa Rica is reported. This eel was swallowed headfirst.

Early Pliocene anuran fossils from Kanapoi, Kenya, and the first fossil record for the African burrowing frog Hemisus (Neobatrachia: Hemisotidae).

PubMed

Delfino, Massimo

2017-07-13

Isolated amphibian bones from the early Pliocene of Kanapoi (West Turkana, Kenya) help to improve the scarce fossil record of the late Neogene and Quaternary amphibians from East Africa. All currently available 579 bones are referable exclusively to the Anura (frogs and toads). More than half of the remains (366) are identified as Hemisus cf. Hemisus marmoratus, an extant species that still inhabits Kenya, but apparently not the northwest of the country and the Turkana area in particular. The rest of the remains are identified simply as Anura indet. because of poor preservation or non congruence with the relatively few African extant taxa whose osteology is known in detail. The Hemisus material represents the first fossil record for Hemisotidae, an endemic African family of peculiar, head-first burrowing frogs, whose sister taxon relationships indicate a divergence from brevicipitids in the Late Cretaceous or early Paleocene. The ecological requirements of extant H. marmoratus suggest that the Kanapoi area surrounding the fluvial and deltaic settings, from where the fossil remains of vertebrates were buried, was likely a grassland or relatively dry, open low tree-shrub savanna. Copyright © 2017 Elsevier Ltd. All rights reserved.

An experimental evaluation of host specificity: The role of encounter and compatibility filters for a rhizocephalan parasite of crabs

USGS Publications Warehouse

Kuris, Armand M.; Goddard, Jeffrey H. R.; Torchin, Mark E.; Murphy, Nicole; Gurney, Robert; Lafferty, Kevin D.

2007-01-01

The encounter/compatibility paradigm of host specificity provides three qualitative pathways to the success or failure of a potential host-parasite interaction. It is usually impossible to distinguish between two of these (encounter and compatibility filters closed versus encounter filter open and compatibility filter closed) because unsuccessful infection attempts are difficult to observe in nature. We were able to open the encounter filter under experimental laboratory conditions. Our analytical system used the rhizocephalan barnacle, Sacculina carcini, a parasitic castrator of the European green crab, Carcinus maenas, and Pachygrapsus marmoratus, a native European crab that occurs with C. maenas but is not parasitized by S. carcini in nature. Penetration followed by unsuccessful infection of P. marmoratus crabs by parasitic barnacle larvae leaves a uniquely permanent record in the thoracic ganglion of the crabs. This provided us with a novel tool to quantify the encounter filter in a host-parasite system in nature. We demonstrated, in the laboratory, that the compatibility filter was closed and that, in nature, even where barnacle larvae were present, the encounter filter was also effectively closed. The closure of both filters in nature explains the failure of this potential host-parasite interaction, an outcome favored by selection in both host and parasite.

The trade-off between heat tolerance and metabolic cost drives the bimodal life strategy at the air-water interface

PubMed Central

Fusi, Marco; Cannicci, Stefano; Daffonchio, Daniele; Mostert, Bruce; Pörtner, Hans-Otto; Giomi, Folco

2016-01-01

The principle of oxygen and capacity limitation of thermal tolerance in ectotherms suggests that the long-term upper limits of an organism's thermal niche are equivalent to the upper limits of the organism's functional capacity for oxygen provision to tissues. Air-breathing ectotherms show wider thermal tolerances, since they can take advantage of the higher availability of oxygen in air than in water. Bimodal species move from aquatic to aerial media and switch between habitats in response to environmental variations such as cyclical or anomalous temperature fluctuations. Here we tested the prediction that bimodal species cope better with thermal stress than truly aquatic species using the crab Pachygrapsus marmoratus as a model species. When in water, oxygen consumption rates of P. marmoratus acutely rise during warming. Beyond a temperature threshold of 23 °C the crab's aerobic metabolism in air remains lower than in water. In parallel, the haemolymph oxygen partial pressure of submerged animals progressive decreases during warming, while it remains low but constant during emersion. Our results demonstrate the ability of a bimodal breathing ectotherm to extend its thermal tolerance during air-breathing, suggesting that there are temperature-related physiological benefits during the evolution of the bimodal life style. PMID:26758742

The trade-off between heat tolerance and metabolic cost drives the bimodal life strategy at the air-water interface.

PubMed

Fusi, Marco; Cannicci, Stefano; Daffonchio, Daniele; Mostert, Bruce; Pörtner, Hans-Otto; Giomi, Folco

2016-01-13

The principle of oxygen and capacity limitation of thermal tolerance in ectotherms suggests that the long-term upper limits of an organism's thermal niche are equivalent to the upper limits of the organism's functional capacity for oxygen provision to tissues. Air-breathing ectotherms show wider thermal tolerances, since they can take advantage of the higher availability of oxygen in air than in water. Bimodal species move from aquatic to aerial media and switch between habitats in response to environmental variations such as cyclical or anomalous temperature fluctuations. Here we tested the prediction that bimodal species cope better with thermal stress than truly aquatic species using the crab Pachygrapsus marmoratus as a model species. When in water, oxygen consumption rates of P. marmoratus acutely rise during warming. Beyond a temperature threshold of 23 °C the crab's aerobic metabolism in air remains lower than in water. In parallel, the haemolymph oxygen partial pressure of submerged animals progressive decreases during warming, while it remains low but constant during emersion. Our results demonstrate the ability of a bimodal breathing ectotherm to extend its thermal tolerance during air-breathing, suggesting that there are temperature-related physiological benefits during the evolution of the bimodal life style.

Landscape genetics informs mesohabitat preference and conservation priorities for a surrogate indicator species in a highly fragmented river system.

PubMed

Lean, J; Hammer, M P; Unmack, P J; Adams, M; Beheregaray, L B

2017-04-01

Poor dispersal species represent conservative benchmarks for biodiversity management because they provide insights into ecological processes influenced by habitat fragmentation that are less evident in more dispersive organisms. Here we used the poorly dispersive and threatened river blackfish (Gadopsis marmoratus) as a surrogate indicator system for assessing the effects of fragmentation in highly modified river basins and for prioritizing basin-wide management strategies. We combined individual, population and landscape-based approaches to analyze genetic variation in samples spanning the distribution of the species in Australia's Murray-Darling Basin, one of the world's most degraded freshwater systems. Our results indicate that G. marmoratus displays the hallmark of severe habitat fragmentation with notably scattered, small and demographically isolated populations with very low genetic diversity-a pattern found not only between regions and catchments but also between streams within catchments. By using hierarchically nested population sampling and assessing relationships between genetic uniqueness and genetic diversity across populations, we developed a spatial management framework that includes the selection of populations in need of genetic rescue. Landscape genetics provided an environmental criterion to identify associations between landscape features and ecological processes. Our results further our understanding of the impact that habitat quality and quantity has on habitat specialists with similarly low dispersal. They should also have practical applications for prioritizing both large- and small-scale conservation management actions for organisms inhabiting highly fragmented ecosystems.

Landscape genetics informs mesohabitat preference and conservation priorities for a surrogate indicator species in a highly fragmented river system

PubMed Central

Lean, J; Hammer, M P; Unmack, P J; Adams, M; Beheregaray, L B

2017-01-01

Poor dispersal species represent conservative benchmarks for biodiversity management because they provide insights into ecological processes influenced by habitat fragmentation that are less evident in more dispersive organisms. Here we used the poorly dispersive and threatened river blackfish (Gadopsis marmoratus) as a surrogate indicator system for assessing the effects of fragmentation in highly modified river basins and for prioritizing basin-wide management strategies. We combined individual, population and landscape-based approaches to analyze genetic variation in samples spanning the distribution of the species in Australia's Murray–Darling Basin, one of the world's most degraded freshwater systems. Our results indicate that G. marmoratus displays the hallmark of severe habitat fragmentation with notably scattered, small and demographically isolated populations with very low genetic diversity—a pattern found not only between regions and catchments but also between streams within catchments. By using hierarchically nested population sampling and assessing relationships between genetic uniqueness and genetic diversity across populations, we developed a spatial management framework that includes the selection of populations in need of genetic rescue. Landscape genetics provided an environmental criterion to identify associations between landscape features and ecological processes. Our results further our understanding of the impact that habitat quality and quantity has on habitat specialists with similarly low dispersal. They should also have practical applications for prioritizing both large- and small-scale conservation management actions for organisms inhabiting highly fragmented ecosystems. PMID:27876805

Pharyngeal cavity and the gills are the target organ for the repellent action of pardaxin in shark.

PubMed

Primor, N

1985-05-15

Pardaxin, an active principle of the repellent secretion of the Red Sea flatfish, Pardachirus marmoratus, elicited severe struggling, mouth paralysis, and transient increase in urea leakage from the gills only when administered to the medium bathing the shark's pharyngeal cavity and gills. An apparatus was constructed which prevents a mixing of the outflow from shark's gills with water bathing its surface skin. It is concluded that in sharks the gills and/or the pharyngeal cavity are the target organ for the repellent action of pardaxin.

New Curculionoidea (Coleoptera) records for Canada

PubMed Central

Douglas, Hume; Bouchard, Patrice; Anderson, Robert S.; de Tonnancour, Pierre; Vigneault, Robert; Webster, Reginald P.

2013-01-01

; Scolytus schevyrewi Semenov Tjan-Shansky, 1902; Tyloderma foveolatum (Say, 1832); (all Curculionidae); Ontario – Trichapion nigrum (Herbst, 1797); Nanophyes marmoratus marmoratus (Goeze, 1777) (both Brentidae); Asperosoma echinatum (Fall, 1917); Micracis suturalis LeConte, 1868; Orchestes alni (Linnaeus, 1758); Phloeosinus pini Swaine, 1915; Scolytus schevyrewi Semenov Tjan-Shansky, 1902; Xyleborinus attenuatus (Blandford, 1894) (all Curculionidae); Quebec – Trigonorhinus alternatus (Say, 1826); Trigonorhinus tomentosus tomentosus (Say, 1826) (both Anthribidae); Trichapion nigrum (Herbst, 1797); Trichapion porcatum (Boheman, 1839); Nanophyes marmoratus marmoratus (Goeze, 1777) (all Brentidae); Lissorhoptrus oryzophilus Kuschel, 1952 (Brachyceridae); Acalles carinatus LeConte, 1876; Ampeloglypter ampelopsis (Riley, 1869); Anthonomus rufipes LeConte, 1876; Anthonomus suturalis LeConte, 1824; Ceutorhynchus hamiltoni Dietz, 1896; Curculio pardalis (Chittenden, 1908); Cyrtepistomus castaneus (Roelofs, 1873); Larinus planus (Fabricius, 1792); Mecinus janthinus (Germar, 1821); Microhyus setiger LeConte, 1876; Microplontus campestris (Gyllenhal, 1837); Orchestes alni (Linnaeus, 1758); Otiorhynchus ligustici (Linnaeus, 1758); Rhinusa neta (Germar, 1821); Trichobaris trinotata (Say, 1832); Tychius liljebladi Blatchley, 1916; Xyleborinus attenuatus (Blandford, 1894); Xyleborus affinis Eichhoff, 1868 (all Curculionidae); Sphenophorus incongruus Chittenden, 1905 (Dryophthoridae); New Brunswick – Euparius paganus Gyllenhal, 1833; Allandrus populi Pierce, 1930; Gonotropis dorsalis (Thunberg, 1796); Euxenus punctatus LeConte, 1876 (all Anthribidae); Loborhynchapion cyanitinctum (Fall, 1927) (Brentidae); Pseudanthonomus seriesetosus Dietz, 1891; Curculio sulcatulus (Casey, 1897); Lignyodes bischoffi (Blatchley, 1916); Lignyodes horridulus (Casey, 1892); Dietzella zimmermanni (Gyllenhal, 1837); Parenthis vestitus Dietz, 1896; Pelenomus squamosus LeConte, 1876; Psomus armatus Dietz

Evidence for two transferrin loci in the Salmo trutta genome.

PubMed

Rozman, T; Dovc, P; Marić, S; Kokalj-Vokac, N; Erjavec-Skerget, A; Rab, P; Snoj, A

2008-12-01

To determine the organization of transferrin (TF) locus in the Salmo trutta genome, partial DNA and cDNA sequencing, fluorescent in situ hybridization (FISH) and Salmo salar BAC analysis were performed. TF expression levels and copy number prediction were assessed using real-time PCR. In addition to two previously reported DNA TF variant sequences of S. trutta and Salmo marmoratus (TF1), two novel variant sequences (TF2) were revealed in both species. Variant-specific sequence tags, characterizing two variants for each TF type (TF1 and TF2), were identified in genomic clones from each of the F1 hybrids between S. trutta and S. marmoratus. These clearly documented double heterozygote status at the TF loci. The real-time PCR data showed that each of the two TF types (TF1 and TF2) existed in one copy only and that the transcription of TF2 was considerably lower compared with TF1. Using FISH, hybridization signals were observed on two medium-sized acrocentric chromosomes of S. trutta karyotype. A TF type-specific PCR followed by a restriction analysis revealed the presence of two TF loci in the majority of analysed BAC clones. It was concluded that the TF gene is duplicated in the genome of S. trutta, and that the two TF loci are located adjacent to one another on the same chromosome. The differing transcription levels of TF1 and TF2 appear to depend on the corresponding promoter activity, which at least for TF2 seems to vary between different Salmo congeners.

A mid-Pleistocene rainforest corridor enabled synchronous invasions of the Atlantic Forest by Amazonian anole lizards.

PubMed

Prates, Ivan; Rivera, Danielle; Rodrigues, Miguel T; Carnaval, Ana C

2016-10-01

Shifts in the geographic distribution of habitats over time can promote dispersal and vicariance, thereby influencing large-scale biogeographic patterns and ecological processes. An example is that of transient corridors of suitable habitat across disjunct but ecologically similar regions, which have been associated with climate change over time. Such connections likely played a role in the assembly of tropical communities, especially within the highly diverse Amazonian and Atlantic rainforests of South America. Although these forests are presently separated by open and dry ecosystems, paleoclimatic and phylogenetic evidence suggest that they have been transiently connected in the past. However, little is known about the timing, magnitude and the distribution of former forest connections. We employ sequence data at multiple loci from three codistributed arboreal lizards (Anolis punctatus, Anolis ortonii and Polychrus marmoratus) to infer the phylogenetic relationships among Amazonian and Atlantic Forest populations and to test alternative historical demographic scenarios of colonization and vicariance using coalescent simulations and approximate Bayesian computation (ABC). Data from the better-sampled Anolis species support colonization of the Atlantic Forest from eastern Amazonia. Hierarchical ABC indicates that the three species colonized the Atlantic Forest synchronously during the mid-Pleistocene. We find support of population bottlenecks associated with founder events in the two Anolis, but not in P. marmoratus, consistently with their distinct ecological tolerances. Our findings support that climatic fluctuations provided key opportunities for dispersal and forest colonization in eastern South America through the cessation of environmental barriers. Evidence of species-specific histories strengthens assertions that biological attributes play a role in responses to shared environmental change. © 2016 John Wiley & Sons Ltd.

Intra-generic and interspecific karyotype patterns of Leptodactylus and Adenomera (Anura, Leptodactylidae) with inclusion of five species from Central Amazonia.

PubMed

Coelho, Ana Carolina; de Mattos, Thais Lemos; Viana, Patrik; Terencio, Maria Leandra; Schneider, Carlos Henrique; Menin, Marcelo; Gross, Maria Claudia

2016-02-01

The genera Leptodactylus and Adenomera comprise 92 species distributed throughout the Neotropical region. These species have a modal diploid chromosome number 2n = 22. However, chromosome rearrangements are evident in the differentiation of five intra-generic groups in the genus Leptodactylus (L. fuscus, L. latrans, L. marmoratus (formally composed by the species of the genus Adenomera), L. melanonotus, L. pentadactylus), yet it is not clear if there is a karyotype pattern for each group. Aiming to understand the intra-generic and interspecific karyotype patterns of Leptodactylus and Adenomera, cytogenetic analyses were performed in A. andreae, L. macrosternum, L. pentadactylus, L. petersii, and L. riveroi using conventional staining, C-banding, nucleolus organizer region (NOR) and hybridization in situ fluorescent (FISH). The karyotype of Leptodactylus riveroi was described for the first time. Adenomera andreae had 2n = 26, while the remaining species 2n = 22. The NOR was found on pair No. 8 of A. andreae, L. macrosternum, L. pentadactylus, and L. riveroi, whereas L. petersii had it on pairs Nos. 6 and 10. These locations were confirmed by the FISH with 18S rDNA probe, except for pair No. 10 of L. petersii. The C-banding pattern was evident at the centromeres of chromosomes of all species and some interspecific variations were also observed. 2n = 22 was observed in the species of the L. latrans group, as well as in the intra-generic groups L. fuscus and L. pentadactylus; in the L. melanonotus group there were three diploid chromosome numbers 2n = 20, 22 and 24; and a larger variation in 2n was also evident in the L. marmoratus group.

Characterization of MHC class IIB for four endangered Australian freshwater fishes obtained from ecologically divergent populations.

PubMed

Bracamonte, Seraina E; Smith, Steve; Hammer, Michael; Pavey, Scott A; Sunnucks, Paul; Beheregaray, Luciano B

2015-10-01

Genetic diversity is an essential aspect of species viability, and assessments of neutral genetic diversity are regularly implemented in captive breeding and conservation programs. Despite their importance, information from adaptive markers is rarely included in such programs. A promising marker of significance in fitness and adaptive potential is the major histocompatibility complex (MHC), a key component of the adaptive immune system. Populations of Australian freshwater fishes are generally declining in numbers due to human impacts and the introduction of exotic species, a scenario of particular concern for members of the family Percichthyidae, several of which are listed as nationally vulnerable or endangered, and hence subject to management plans, captive breeding, and restoration plans. We used a next-generation sequencing approach to characterize the MHC IIB locus and provide a conservative description of its levels of diversity in four endangered percichthyids: Gadopsis marmoratus, Macquaria australasica, Nannoperca australis, and Nannoperca obscura. Evidence is presented for a duplicated MHC IIB locus, positively selected sites and recombination of MHC alleles. Relatively moderate levels of diversity were detected in the four species, as well as in different ecotypes within each species. Phylogenetic analyses revealed genus specific clustering of alleles and no allele sharing among species. There were also no shared alleles observed between two ecotypes within G. marmoratus and within M. australasica, which might be indicative of ecologically-driven divergence and/or long divergence times. This represents the first characterization and assessment of MHC diversity for Percichthyidae, and also for Australian freshwater fishes in general, providing key genetic resources for a vertebrate group of increasing conservation concern. Copyright © 2015 Elsevier Ltd. All rights reserved.

Vocalizations of the Kittlitz's Murrelet

USGS Publications Warehouse

van Pelt, Thomas I.; Piatt, John F.; Van Vliet, Gus B.

1999-01-01

We present the first documentation of Kittlitz's Murrelet (Brachyramphus brevirostris) vocalizations, based on recordings made in Glacier Bay, Alaska, in 1994. We identified two apparently related types of calls: groan and quack. The Kittlitz's Murrelet calls were markedly different from the most common calls of the congeneric Marbled Murrelet (Brachyramphus marmoratus), but shared characteristics with the Marbled Murrelet's less common 'groan' call. Phylogeny, breeding biology, and habitat characteristics may explain relationships between the congeneric vocalizations. More complete knowledge of the Kittlitz's Murrelet vocal repertoire is needed before vocalizations can be either used or discarded in the design of effective programs to monitor this rare and poorly-known species.

Afrobatrachian mitochondrial genomes: genome reorganization, gene rearrangement mechanisms, and evolutionary trends of duplicated and rearranged genes

PubMed Central

2013-01-01

Background Mitochondrial genomic (mitogenomic) reorganizations are rarely found in closely-related animals, yet drastic reorganizations have been found in the Ranoides frogs. The phylogenetic relationships of the three major ranoid taxa (Natatanura, Microhylidae, and Afrobatrachia) have been problematic, and mitogenomic information for afrobatrachians has not been available. Several molecular models for mitochondrial (mt) gene rearrangements have been proposed, but observational evidence has been insufficient to evaluate them. Furthermore, evolutionary trends in rearranged mt genes have not been well understood. To gain molecular and phylogenetic insights into these issues, we analyzed the mt genomes of four afrobatrachian species (Breviceps adspersus, Hemisus marmoratus, Hyperolius marmoratus, and Trichobatrachus robustus) and performed molecular phylogenetic analyses. Furthermore we searched for two evolutionary patterns expected in the rearranged mt genes of ranoids. Results Extensively reorganized mt genomes having many duplicated and rearranged genes were found in three of the four afrobatrachians analyzed. In fact, Breviceps has the largest known mt genome among vertebrates. Although the kinds of duplicated and rearranged genes differed among these species, a remarkable gene rearrangement pattern of non-tandemly copied genes situated within tandemly-copied regions was commonly found. Furthermore, the existence of concerted evolution was observed between non-neighboring copies of triplicated 12S and 16S ribosomal RNA regions. Conclusions Phylogenetic analyses based on mitogenomic data support a close relationship between Afrobatrachia and Microhylidae, with their estimated divergence 100 million years ago consistent with present-day endemism of afrobatrachians on the African continent. The afrobatrachian mt data supported the first tandem and second non-tandem duplication model for mt gene rearrangements and the recombination-based model for concerted

Long-term monitoring of tropical alpine habitat change, Andean anurans, and chytrid fungus in the Cordillera Vilcanota, Peru: Results from a decade of study.

PubMed

Seimon, Tracie A; Seimon, Anton; Yager, Karina; Reider, Kelsey; Delgado, Amanda; Sowell, Preston; Tupayachi, Alfredo; Konecky, Bronwen; McAloose, Denise; Halloy, Stephan

2017-03-01

The Cordillera Vilcanota in southern Peru is the second largest glacierized range in the tropics and home to one of the largest high-alpine lakes, Sibinacocha (4,860 m). Here, Telmatobius marmoratus (marbled water frog), Rhinella spinulosa (Andean toad), and Pleurodema marmoratum (marbled four-eyed frog) have expanded their range vertically within the past century to inhabit newly formed ponds created by ongoing deglaciation. These anuran populations, geographically among the highest (5,200-5,400 m) recorded globally, are being impacted by the chytrid fungus Batrachochytrium dendrobatidis ( Bd ), and the disease it causes, chytridiomycosis. In this study, we report results from over a decade of monitoring these three anuran species, their habitat, and Bd infection status. Our observations reveal dynamic changes in habitat including ongoing rapid deglaciation (18.4 m/year widening of a corridor between retreating glaciers from 2005 to 2015), new pond formation, changes in vegetation in amphibian habitat, and widespread occurrence of Bd in amphibians in seven sites. Three of these sites have tested positive for Bd over a 9- to 12-year period. In addition, we observed a widespread reduction in T. marmoratus encounters in the Vilcanota in 2008, 2009, and 2012, while encounters increased in 2013 and 2015. Despite the rapid and dynamic changes in habitat under a warming climate, continued presence of Bd in the environment for over a decade, and a reduction in one of three anuran species, we document that these anurans continue to breed and survive in this high Andean environment. High variability in anuran encounters across sites and plasticity in these populations across habitats, sites, and years are all factors that could favor repopulation postdecline. Preserving the connectivity of wetlands in the Cordillera Vilcanota is therefore essential in ensuring that anurans continue to breed and adapt as climate change continues to reshape the environment.

Jumping sans legs: does elastic energy storage by the vertebral column power terrestrial jumps in bony fishes?

PubMed

Ashley-Ross, Miriam A; Perlman, Benjamin M; Gibb, Alice C; Long, John H

2014-02-01

Despite having no obvious anatomical modifications to facilitate movement over land, numerous small fishes from divergent teleost lineages make brief, voluntary terrestrial forays to escape poor aquatic conditions or to pursue terrestrial prey. Once stranded, these fishes produce a coordinated and effective "tail-flip" jumping behavior, wherein lateral flexion of the axial body into a C-shape, followed by contralateral flexion of the body axis, propels the fish into a ballistic flight-path that covers a distance of multiple body lengths. We ask: how do anatomical structures that evolved in one habitat generate effective movement in a novel habitat? Within this context, we hypothesized that the mechanical properties of the axial skeleton play a critical role in producing effective overland movement, and that tail-flip jumping species demonstrate enhanced elastic energy storage through increased body flexural stiffness or increased body curvature, relative to non-jumping species. To test this hypothesis, we derived a model to predict elastic recoil work from the morphology of the vertebral (neural and hemal) spines. From ground reaction force (GRF) measurements and high-speed video, we calculated elastic recoil work, flexural stiffness, and apparent material stiffness of the body for Micropterus salmoides (a non-jumper) and Kryptolebias marmoratus (adept tail-flip jumper). The model predicted no difference between the two species in work stored by the vertebral spines, and GRF data showed that they produce the same magnitude of mass-specific elastic recoil work. Surprisingly, non-jumper M. salmoides has a stiffer body than tail-flip jumper K. marmoratus. Many tail-flip jumping species possess enlarged, fused hypural bones that support the caudal peduncle, which suggests that the localized structures, rather than the entire axial skeleton, may explain differences in terrestrial performance. Copyright © 2013 Elsevier GmbH. All rights reserved.

DOE Office of Scientific and Technical Information (OSTI.GOV)

DeVelice, R.L.; Hubbard, C.; Potkin, M.

This study documents ecological characteristics of areas in the Exxon Valdez oil spill area in southcentral Alaska with contrasting marbled murelet (Brachyramphus marmoratus) detection levels. A total of 73 vegetation and 41 physical site variables were evaluated. Marbled murrelet activity level (number of detections) and the frequency of occupied behavior (behaviors indicative of nesting) increased with increasing area of coniferous forest. There was a positive relationship between activity level and the number of mossy platforms in trees. Significant correlations with an index of incoming solar radiation are interpreted as indicating a preference of marbled murrelets for sites sheltered from highmore » winds and severe cold during the nesting period.« less

Status Review of the Marbled Murrelet (Brachyramphus marmoratus) in Alaska and British Columbia

DTIC Science & Technology

2006-01-01

the 1970s– 1980s (Piatt and Anderson, 1996; appendix A). Similarly, there is evidence that changes in the Prince William Sound marine ecosystem in the... 1980s negatively affected fish-eating birds (DeGange, 1996; Kuletz and others, 1997). Marbled Murrelets ate mostly sand lance during the late 1970s...compilation with the addition of two ground nests observed in Alaska (Simons, 1980 ; Hirsch and others, 1981). The outcome (chick fledged or failed

Effect of tributyltin on the development of ovary in female cuvier (Sebastiscus marmoratus).

PubMed

Zhang, Jiliang; Zuo, Zhenghong; Chen, Yixin; Zhao, Yang; Hu, Shuai; Wang, Chonggang

2007-07-20

Organotin compounds, such as tributyltin (TBT) used as an antifouling biocide, can induce masculinization in female mollusks. However, few studies addressing the effect of TBT in fish have been reported. This study was conducted to investigate effects of TBT at environmental levels (1, 10, 100ng/L) on the development of ovary in female cuvier. TBT exposure elevated testosterone levels, increased the ratio of testosterone to 17beta-estradiol and decreased 17beta-estradiol levels in ovaries after 50 days compared to the control. Three stages of follicles (primary growth stage, yolk vesicle stage, vitellogenic stage) were observed in the ovaries of cuvier at the control and 1ng/L TBT group. The ovaries at the 10ng/L TBT group were characterized by the lack of vitellogenic stage follicles and instead had higher proportions of primary growth stage follicles. 100ng/L TBT resulted in follicles that were entirely at the earliest (primary growth stage) stages of development. There was a significant increase in apoptotic ovarian follicular cells judged by TUNEL-positive cell at the 10ng/L TBT group. The TUNEL-positive follicles were observed at the 100ng/L TBT group. The result in the present study showed that TBT at environmentally realistic concentrations can inhibit the ovarian development in fish. Besides the changes of sex hormone induced by TBT, apoptosis appears to be one mechanism affecting ovarian development.

Notes on chromosome numbers and C-banding patterns in karyotypes of some weevils from central Europe (Coleoptera, Curculionoidea: Apionidae, Nanophyidae, Curculionidae).

PubMed

Lachowska, Dorota; Holecová, Milada; Rozek, Maria

2004-01-01

Chromosome numbers and C-banding patterns of sixteen weevil species are presented. The obtained results confirm the existence of two groups of species with either a small or large amount of heterochromatin in the karyotype. The first group comprises twelve species (Apionidae: Oxystoma cerdo, Eutrichapion melancholicum, Ceratapion penetrans, Ceratapion austriacum, Squamapion flavimanum, Rhopalapion longirostre; Nanophyidae: Nanophyes marmoratus; Curculionidae: Centricnemus (=Peritelus) leucogrammus, Sitona humeralis, Sitona lineatus, Sitona macularis, Sitona suturalis). In weevils with a small amount of heterochromatin, tiny grains on the nucleus during interphase are visible, afterwards appearing as dark dots during mitotic and meiotic prophase. The second group comprises four species from the curculionid subfamily Cryptorhynchinae (Acalles camelus, Acalles commutatus, Acalles echinatus, Ruteria hypocrita) which possess much larger heteropycnotic chromosome parts visible during all nuclear divisions. The species examined have pericentromeric C-bands on autosomes and on the X chromosome.

Fish fauna recovery in a newly re-flooded Mediterranean coastal lagoon

NASA Astrophysics Data System (ADS)

Koutrakis, Emmanuil; Sylaios, Georgios; Kamidis, Nikolaos; Markou, Dimitrios; Sapounidis, Argyris

2009-08-01

Drana Lagoon, located at the NW site of Evros River Delta, was drained in 1987 and re-flooded in 2004 within the framework of an integrated wetland restoration project. This study presents the results of a monitoring program of the lagoon's oceanographic, water quality and fish fauna characteristics, during the pre- and post-restoration period. Results depict the presence of high salinity water (up to 41) due to seawater intrusion, strong evaporation in its interior and inadequate freshwater inflows. Overall, nutrient levels were low depicting local changes. Tidal variability at the mouth was approximately 0.2 m, producing high velocity tidal currents (up to 0.75 m/s). Eleven fish fauna species were collected; seven species were caught in both the inlet channel and the lagoon during the pre-restoration period and nine species in the post-restoration period. Atherina boyeri (37.6%) and Pomatoschistus marmoratus (31.7%) dominated the lagoon during the post-restoration period. Most of the A. boyeri specimens (88.5%) were caught inside the lagoon, while P. marmoratus had an almost equal distribution in the inlet channel and the lagoon (56.3% and 43.7% respectively). The presence of species of the Mugilidae family (5.2% total average catches after lagoon re-flooding) was mainly in the inlet channel (12.6% of the average catches) and not inside the lagoon (only 1.3% of the average catches). The small number of fish species inhabiting the lagoon might be the result of the recent restoration or it could be related with the increased water flow observed at the lagoon mouth during the flood and ebb tidal phases, and also in the presence of a smooth bank in the concrete waterspout that connects the entrance channel with the lagoon. The limited presence of the Mugilidae juveniles inside the lagoon could be related to the prevailing tidal inlet dynamics (i.e. strong ebb flow at lagoon inlet), thus preventing the species to enter the lagoon. In order to restore the lagoon

Determination of steroid hormones in fish tissues by microwave-assisted extraction coupled to ultra-high performance liquid chromatography tandem mass spectrometry.

PubMed

Guedes-Alonso, Rayco; Sosa-Ferrera, Zoraida; Santana-Rodríguez, José Juan

2017-12-15

Steroid hormones produce adverse effects on biota as well as bioaccumulation in fish and seafood, making it necessary to develop methodologies to evaluate these compounds in samples related to the food chain. This work presents an analytical method for evaluating 15 steroid hormones in fish tissue. It is based on microwave-assisted extraction and solid-phase extraction coupled to ultra-high-performance liquid chromatography tandem mass spectrometry (MAE-SPE-UHPLC-MS/MS). The proposed method shows appropriate detection limits (0.14-49.0ngg -1 ), recoveries in the range of 50% and good repeatability. After optimization, the method was applied to different tissues from two small fishes of the Canary Islands that constitute an important level of the food web (Boops boops and Sphoeroides marmoratus) and were exposed to the outfall of the Las Palmas de Gran Canaria wastewater treatment plant. The concentrations of eight detected compounds ranged from below the quantification limits to 3.95μgg -1 . Copyright © 2017 Elsevier Ltd. All rights reserved.

Experimental infections in Venezuelan lizards by Trypanosoma cruzi.

PubMed

Urdaneta-Morales, S; McLure, I

1981-06-01

Virulent trypomastigotes of the Y strain of Trypanosoma cruzi were administered to Tropidurus hispidus, Ameiva ameiva, Cnemidophorus lemniscatus, Polychrus marmoratus, and Phyllodactylus ventralis (Sauria). Intraperitoneal and subcutaneous inoculations of lizards with mouse blood or with feces of infected Rhodnius prolixus (Reduviidae, Triatominae), as well as forced ingestion of triturated Rhodnius, produced no parasitaemias detectable either directly or by xenodiagnosis, while control mice became parasitized. Pretreatment with the immunosuppressive drug Fluocinolone acetonide led to establishing patent infections in inoculated lizards. Cryptic infections were established by inoculation of 1 X 10(6) parasites from Davis' medium, or by 95 X 10(3) parasites from lizard tissue culture. Parasites were not seen in tissues. Mice inoculated with blood or tissue homogenates from these lizards became parasitized. Parasites from Davis' medium inoculated into the peritoneal cavity of lizards were capable, to a very low degree, of penetrating the free peritoneal macrophages and changing into amastigotes. The factors possibly responsible for the natural resistance of poikilothermic vertebrates to T. cruzi are discussed.

Selection of forage-fish schools by Murrelets and Tufted Puffins in Prince William Sound, Alaska

USGS Publications Warehouse

Ostrand, William D.; Coyle, Kenneth O.; Drew, Gary S.; Maniscalco, John M.; Irons, David B.

1998-01-01

We collected hydroacoustic and bird-observation data simultaneously along transects in three areas in Prince William Sound, Alaska, 21 July-11 August 1995. The probability of the association of fish schools with Marbled Murrelets (Brachyramphus marmoratus) and Tufted Puffins (Fratercula cirrhata) was determined through the use of resource selection functions based on logistic regression. Mean (± SD) group sizes were small for both species, 1.7 ± 1.1 and 1.2 ± 0.7 for Marbled Murrelets and Tufted Puffins, respectively. Oceanographically, all study areas were stratified with synchronous thermo- and pycnoclines (a water layer of increasing temperature and density, respectively, with increasing depth). Our analysis indicated that Tufted Puffins selected fish schools near their colony, whereas Marbled Murrelets selected smaller, denser fish schools in shallower habitats. We suggest that murrelets selected shallower habitats in response to lower maximum diving depths than puffins. Small feeding-groups size is discussed in terms of foraging theory and as a consequence of dispersed, low density food resources.

FIELD OBSERVATIONS OF THE ECOLOGY AND HABITS OF MANGROVE RIVULUS (RIVULUS MARMORATUS) IN BELIZE AND FLORIDA

EPA Science Inventory

This report provides a synopsis of field studies of Rivulus marmaratus from two population surveys of mangrove islands adjacent to the Belize barrier reef and observations made over fifteen years at several sites in south Florida. his small, cryptically colored killifish is the o...

PRELIMINARY OBSERVATIONS OF ATRAZINE-INDUCED EFFECTS UPON GONADAL DIFFERENTIATION IN RIVULUS MARMORATUS, A NATURALLY HERMAPHRODITIC FISH

EPA Science Inventory

The commonly used agricultural herbicide atrazine has been recognized as an endocrine disrupting chemical. In amphibians and reptiles, atrazine has been reported to alter sexual differentiation and induce secondary sexual characteristics that have been attributed to enhanced arom...

Toxin gene determination and evolution in scorpaenoid fish.

PubMed

Chuang, Po-Shun; Shiao, Jen-Chieh

2014-09-01

In this study, we determine the toxin genes from both cDNA and genomic DNA of four scorpaenoid fish and reconstruct their evolutionary relationship. The deduced protein sequences of the two toxin subunits in Sebastapistes strongia, Scorpaenopsis oxycephala, and Sebastiscus marmoratus are about 700 amino acid, similar to the sizes of the stonefish (Synanceia horrida, and Synanceia verrucosa) and lionfish (Pterois antennata and Pterois volitans) toxins previously published. The intron positions are highly conserved among these species, which indicate the applicability of gene finding by using genomic DNA template. The phylogenetic analysis shows that the two toxin subunits were duplicated prior to the speciation of Scorpaenoidei. The precedence of the gene duplication over speciation indicates that the toxin genes may be common to the whole family of Scorpaeniform. Furthermore, one additional toxin gene has been determined in the genomic DNA of Dendrochirus zebra. The phylogenetic analysis suggests that an additional gene duplication occurred before the speciation of the lionfish (Pteroinae) and a pseudogene may be generally present in the lineage of lionfish. Copyright © 2014 Elsevier Ltd. All rights reserved.

Losses of seabirds in gill nets in the North Pacific

USGS Publications Warehouse

DeGange, Anthony R.; Day, Robert H.; Takekawa, Jean E.; Mendenhall, Vivian M.; Vermeer, Kees; Briggs, K.T.; Morgan, K.H.; Siegel-Causey, D.

1993-01-01

Existing knowledge on high-seas and coastal gillnet fisheries known to kill seabirds in the North Pacific is summarized. Recent estimates suggest that high-seas gillnet fisheries may have taken more than 500,000 seabirds in 1990. The majority of birds taken in those fisheries were Sooty Puffinus griseus or Short-tailed P. tenuirostris shearwaters. A recent analysis of impacts of those fisheries suggests that both shearwater populations may be declining slightly, although overall populations remain large. Impacts on seabirds of gillnet fishing in coastal waters are poorly known, except in California. Incidental mortality of seabirds in coastal gillnet fisheries may be adding additional stress to populations already compromised by habitat destruction and oil spills. Local populations of Marbled Murrelets Brachyramphus marmoratus, Common Murres Uria aalge, and Japanese Murrelets Synthliboramphus wumizusume may be particularly vulnerable to coastal gillnet fisheries. United National General Assembly Resolution 44/225 called for a moratorium on high-seas gillnet fishing by 30 June 1992. Japan has complied and Korea and Taiwan will comply with the moratorium.

Taxonomic revision of the South American catfish genus Ageneiosus (Siluriformes: Auchenipteridae) with the description of four new species

USGS Publications Warehouse

Ribeiro, Frank R.V.; Rapp Py-Daniel, Lúcia H.; Walsh, Stephen J.

2017-01-01

The catfish genus Ageneiosus in the exclusively Neotropical family Auchenipteridae is revised. Species of Ageneiosus are widely distributed in all major South American continental drainages except the São Francisco River basin and small rivers along the Brazilian east coast. The taxonomic revision was based on examination of available type specimens, additional museum material and comparisons of original descriptions. A suite of morphometric, meristic and qualitative characters of internal and external anatomy were used to diagnose valid species and determine synonyms. Thirteen valid species are recognized in the genus Ageneiosus, some of which are widely distributed across South America. Ageneiosus pardalis is the only trans-Andean species in the genus. Ageneiosus polystictus and Ageneiosus uranophthalmus are more widely distributed than previously reported. Ageneiosus marmoratus is a junior synonym of Ageneiosus inermis. Ageneiosus dentatus is a valid species and its name is removed from the synonymy of Ageneiosus ucayalensis. Four new species are described: Ageneiosus akamai, Ageneiosus apiaka, Ageneiosus intrusus and Ageneiosus lineatus, all from the Amazon River basin. A dichotomous key for all 13 valid species of Ageneiosus species is provided.

Age ratios as estimators of productivity: testing assumptions on a threatened seabird, the marbled murrelet (Brachyramphus marmoratus)

Treesearch

M. Zachariah Peery; Benjamin H. Becker; Steven R. Beissinger

2007-01-01

The ratio of hatch-year (HY) to after-hatch-year (AHY) individuals (HY:AHY ratio) can be a valuable metric for estimating avian productivity because it does not require monitoring individual breeding sites and can often be estimated across large geographic and temporal scales. However, rigorous estimation of age ratios requires that both young and adult age classes are...

Restricted gene flow at the micro- and macro-geographical scale in marble trout based on mtDNA and microsatellite polymorphism.

PubMed

Pujolar, José M; Lucarda, Alvise N; Simonato, Mauro; Patarnello, Tomaso

2011-04-14

The genetic structure of the marble trout Salmo trutta marmoratus, an endemic salmonid of northern Italy and the Balkan peninsula, was explored at the macro- and micro-scale level using a combination of mitochondrial DNA (mtDNA) and microsatellite data. Sequence variation in the mitochondrial control region showed the presence of nonindigenous haplotypes indicative of introgression from brown trout into marble trout. This was confirmed using microsatellite markers, which showed a higher introgression at nuclear level. Microsatellite loci revealed a strong genetic differentiation across the geographical range of marble trout, which suggests restricted gene flow both at the micro-geographic (within rivers) and macro-geographic (among river systems) scale. A pattern of Isolation-by-Distance was found, in which genetic samples were correlated with hydrographic distances. A general West-to-East partition of the microsatellite polymorphism was observed, which was supported by the geographic distribution of mitochondrial haplotypes. While introgression at both mitochondrial and nuclear level is unlikely to result from natural migration and might be the consequence of current restocking practices, the pattern of genetic substructuring found at microsatellites has been likely shaped by historical colonization patterns determined by the geological evolution of the hydrographic networks.

DDT and Derivatives in Indicator Species of the Aquatic Food Web of Rangsit Agricultural Area, Central Thailand

PubMed Central

Siriwong, W.; Thirakhupt, K.; Sitticharoenchai, D.; Rohitrattana, J.; Thongkongowm, P.; Borjan, M.; Robson, M.

2009-01-01

The presence of DDT and derivatives in the food web of freshwater ecosystems of Rangsit agricultural area, Pathum Thani Province, Thailand were investigated from June 2004 to May 2007. By using gas chromatography (GC) with micro electron capture detector (μ ECD), DDT and derivatives in water, sediment, and fifteen indicator species i.e., 2 producers; Eichhornia crassipes and plankton (phyto- and zoo- plankton), an herbivore; Trichogaster microlepis (3) 3 omnivores; Trichogaster trichopterus, Oreochromis niloticus, and Puntius gonionotus, 6 carnivores; Channa striatus, Oxyeleotris marmoratus, Macrognathus siamensis, Parambassis siamensis, Anabas testudineus, and Pristolepis fasciatus, and 3 detritivores; Macrobrachium lanchesteri, Pomacea sp., and Filopaludina mertensi were measured. Results show low concentration levels (part per billion) of DDT & derivatives in each food web compartment i.e. water, sediment, aquatic plant, plankton, fish, and invertebrates. Magnification patterns, i.e. bioconcentration, bioaccumulation, and biomagnification, based on habitat and foraging behavior of selected freshwater species indicates that DDT & derivatives can accumulate and be magnified through the food chain from the lowest up to the highest trophic level. Therefore, the presence of residues and the evidence of magnification patterns can be observed as ecological indicators for evaluating ecological health risk. PMID:20161116

Genetic and life-history consequences of extreme climate events

PubMed Central

Mangel, Marc; Jesensek, Dusan; Garza, John Carlos; Crivelli, Alain J.

2017-01-01

Climate change is predicted to increase the frequency and intensity of extreme climate events. Tests on empirical data of theory-based predictions on the consequences of extreme climate events are thus necessary to understand the adaptive potential of species and the overarching risks associated with all aspects of climate change. We tested predictions on the genetic and life-history consequences of extreme climate events in two populations of marble trout Salmo marmoratus that have experienced severe demographic bottlenecks due to flash floods. We combined long-term field and genotyping data with pedigree reconstruction in a theory-based framework. Our results show that after flash floods, reproduction occurred at a younger age in one population. In both populations, we found the highest reproductive variance in the first cohort born after the floods due to a combination of fewer parents and higher early survival of offspring. A small number of parents allowed for demographic recovery after the floods, but the genetic bottleneck further reduced genetic diversity in both populations. Our results also elucidate some of the mechanisms responsible for a greater prevalence of faster life histories after the extreme event. PMID:28148745

A ZFY-like sequence in fish, with comments on the evolution of the ZFY family of genes in vertebrates

DOE Office of Scientific and Technical Information (OSTI.GOV)

Zimmerer, E.J.; Threlkeld, L.

1995-08-01

ZFY-like genes have been observed in a variety of vertebrate species. Although originally implicated as the primary testis-determining gene in humans and other placental mammals, more recent evidence indicates a role(s) outside that of testis determination. In this study, DNA from five species of fish, Carasius auratus, Rivulus marmoratus, Xiphophorus maculatus, X. milleri, and X. nigrensis was subjected to Southern blot analysis using a PCR-amplified fragment of mouse ZFY-like sequence as a probe. Restriction fragment patterns were not polymorphic between sexes in any one species but showed a different pattern for each species. With one exception, Rivulus, a 3.1-kb bandmore » from the EcoRI digestion was common to all. Sequence and open reading frame analysis of this fragment showed a strong homology to other known vertebrate ZFY-like genes. Of particular interest in this gene is a novel third finger domain similar to one human and one alligator ZFY-like gene. Our studies and others provide evidence for a family of vertebrate ZFY genes, with those having this novel third finger being representative of the ancestral condition. 30 refs., 3 figs., 3 tabs.« less

Genetic and life-history consequences of extreme climate events.

PubMed

Vincenzi, Simone; Mangel, Marc; Jesensek, Dusan; Garza, John Carlos; Crivelli, Alain J

2017-02-08

Climate change is predicted to increase the frequency and intensity of extreme climate events. Tests on empirical data of theory-based predictions on the consequences of extreme climate events are thus necessary to understand the adaptive potential of species and the overarching risks associated with all aspects of climate change. We tested predictions on the genetic and life-history consequences of extreme climate events in two populations of marble trout Salmo marmoratus that have experienced severe demographic bottlenecks due to flash floods. We combined long-term field and genotyping data with pedigree reconstruction in a theory-based framework. Our results show that after flash floods, reproduction occurred at a younger age in one population. In both populations, we found the highest reproductive variance in the first cohort born after the floods due to a combination of fewer parents and higher early survival of offspring. A small number of parents allowed for demographic recovery after the floods, but the genetic bottleneck further reduced genetic diversity in both populations. Our results also elucidate some of the mechanisms responsible for a greater prevalence of faster life histories after the extreme event. © 2017 The Author(s).

Monophyly of the species of Hepatozoon (Adeleorina: Hepatozoidae) parasitizing (African) anurans, with the description of three new species from hyperoliid frogs in South Africa.

PubMed

Netherlands, Edward C; Cook, Courtney A; Du Preez, Louis H; Vanhove, Maarten P M; Brendonck, Luc; Smit, Nico J

2017-12-04

Haemogregarines (Apicomplexa: Adeleiorina) are a diverse group of haemoparasites reported from almost all vertebrate classes. The most commonly recorded haemogregarines to parasitize anurans are species of Hepatozoon Miller, 1908. To date 16 Hepatozoon species have been described from anurans in Africa, with only a single species, Hepatozoon hyperolli (Hoare, 1932), infecting a member of the Hyperoliidae. Furthermore, only two Hepatozoon species are known from South African anurans, namely Hepatozoon theileri (Laveran, 1905) and Hepatozoon ixoxo Netherlands, Cook and Smit, 2014, from Amietia delalandii (syn. Amietia quecketti) and three Sclerophrys species, respectively. Blood samples were collected from a total of 225 individuals representing nine hyperoliid species from several localities throughout northern KwaZulu-Natal, South Africa. Twenty frogs from three species were found positive for haemogregarines, namely Afrixalus fornasinii (6/14), Hyperolius argus (2/39), and Hyperolius marmoratus (12/74). Based on morphological characteristics, morphometrics and molecular findings three new haemogregarine species, Hepatozoon involucrum Netherlands, Cook and Smit n. sp., Hepatozoon tenuis Netherlands, Cook and Smit n. sp. and Hepatozoon thori Netherlands, Cook and Smit n. sp., are described from hyperoliid hosts. Furthermore, molecular analyses show anuran Hepatozoon species to be a separate monophyletic group, with species isolated from African hosts forming a monophyletic clade within this cluster.

Status and distribution of the Kittlitz's murrelet Brachyramphus brevirostris in Kenai Fjords, Alaska

USGS Publications Warehouse

Arimitsu, Mayumi L.; Piatt, John F.; Romano, Marc D.; van Pelt, Thomas I.

2011-01-01

The Kittlitz's Murrelet Brachyramphus brevirostris is a candidate species for listing under the US Endangered Species Act because of its apparent declines within core population areas of coastal Alaska. During the summers of 2006-2008, we conducted surveys in marine waters adjacent to Kenai Fjords National Park, Alaska, to estimate the current population size of Kittlitz's and Marbled murrelets B. marmoratus and examine seasonal variability in distribution within coastal fjords. We also evaluated historical data to estimate trend. Based on an average of point estimates, we find the recent population (95% CI) of Kittlitz's Murrelet to be 716 (353-1080) individuals, that of Marbled Murrelet to be 6690 (5427-7953) individuals, and all Brachyramphus murrelets combined to number 8186 (6978-9393) birds. Within-season density estimates showed Kittlitz's Murrelets generally increased between June and July, but dispersed rapidly by August, while Marbled Murrelets generally increased throughout the summer. Trends in Kittlitz's and Marbled murrelet populations were difficult to assess with confidence. Methods for counting or sampling murrelets varied in early decades of study, while in later years there is uncertainty due to highly variable counts among years, which may be due in part to timing of surveys relative to the spring bloom in coastal waters of the Gulf of Alaska.

Sexual phenotype drives variation in endocrine responses to social challenge in a quasi-clonal animal

PubMed Central

Huang, Shu-Ping; Garcia, Mark; Fuller, Adam

2018-01-01

In many species, males tend to behave more aggressively than females and female aggression often occurs during particular life stages such as maternal defence of offspring. Though many studies have revealed differences in aggression between the sexes, few studies have compared the sexes in terms of their neuroendocrine responses to contest experience. We investigated sex differences in the endocrine response to social challenge using mangrove rivulus fish, Kryptolebias marmoratus. In this species, sex is determined environmentally, allowing us to produce males and hermaphrodites with identical genotypes. We hypothesized that males would show elevated androgen levels (testosterone and 11-ketotestosterone) following social challenge but that hermaphrodite responses might be constrained by having to maintain both testicular and ovarian tissue. To test this hypothesis, we staged fights between males and between hermaphrodites, and then compared contest behaviour and hormone responses between the sexes. Hermaphrodites had significantly higher oestradiol but lower 11-ketotestosterone than males before contests. Males took longer to initiate contests but tended to fight more aggressively and sustain longer fights than hermaphrodites. Males showed a dramatic post-fight increase in 11-ketotestosterone but hermaphrodites did not. Thus, despite being genetically identical, males and hermaphrodites exhibit dramatically different fighting strategies and endocrine responses to contests. PMID:29765691

How aquatic water-beetle larvae with small chambered eyes overcome challenges of hunting under water.

PubMed

Stowasser, Annette; Buschbeck, Elke K

2014-11-01

A particularly unusual visual system exists in the visually guided aquatic predator, the Sunburst Diving Beetle, Thermonectus marmoratus (Coleoptera: Dytiscidae). The question arises: how does this peculiar visual system function? A series of experiments suggests that their principal eyes (E1 and E2) are highly specialized for hunting. These eyes are tubular and have relatively long focal lengths leading to high image magnification. Their retinae are linear, and are divided into distinct green-sensitive distal and UV and polarization-sensitive proximal portions. Each distal retina, moreover, has many tiers of photoreceptors with rhabdomeres the long axis of which are peculiarly oriented perpendicular to the light path. Based on detailed optical investigations, the lenses of these eyes are bifocal and project focused images onto specific retinal tiers. Behavioral experiments suggest that these larvae approach prey within their eyes' near-fields, and that they can correctly gauge prey distances even when conventional distance-vision mechanisms are unavailable. In the near-field of these eyes object distance determines which of the many retinal layers receive the best-focused images. This retinal organization could facilitate an unusual distance-vision mechanism. We here summarize past findings and discuss how these eyes allow Thermonectus larvae to be such successful predators.

Susceptibility of cultured juveniles of several marine fish to the sevenband grouper nervous necrosis virus.

PubMed

Tanaka, S; Kuriyama, I; Nakai, T; Miyazaki, T

2003-02-01

Piscine nodaviruses (betanodaviruses) have been tentatively divided into four genotypes (SJNNV, RGNNV, TPNNV and BFNNV) and it is suggested that host specificity is different among these genotypes. In the present study, a betanodavirus [sevenband grouper nervous necrosis virus (SGNNV)] belonging to the redspotted grouper nervous necrosis virus (RGNNV) genotype, to which most betanodaviruses from warm water fish are identified, was evaluated for its pathogenicity to hatchery-reared juveniles of several marine fish species. When challenged with the virus by a bath method (10(5.1) TCID50 mL(-1)), sevenband grouper, Epinephelus septemfasciatus, Japanese flounder, Paralichthys olivaceus, and tiger puffer, Takifugu rubripes, displayed behavioural abnormalities and mortalities with distinct histopathological signs of viral nervous necrosis and heavily immunostained cells were observed in the central nervous tissues and retina. Bath-challenged rock fish, Sebastiscus marmoratus, and a hybrid of sevenband grouper and kelp grouper, E. moara, did not display any behavioural abnormality or mortality during the experimental period, although many fish showed slight signs of viral infection in nerve cells. Kelp grouper and red sea bream, Pagrus major, showed no behavioural abnormality, mortality or immunohistopathological changes after the virus challenge. These results are, in part, consistent with the natural host range of RGNNV, indicating the complexity in the host specificity of betanodaviruses.

Purification and Pore Forming Activity of Two Hydrophobic Polypeptides from the Secretion of the Red Sea Moses Sole (Pardachirus marmoratus)

DTIC Science & Technology

1986-11-01

Uppsala, Sweden. Ovalbumin, bovine albumin fractio n V, soybean lecithin , sodium cnolate, gramicidin D and Dowex 50 x 8 (50-100 mesh) were obtained from...A-,.ino acid analysis 50 ug duplIcate samples of PXI and PXII, from reverse phase HPLC, were dissolved in 0.4 ml of 6 N HCI and hydrolyzed ocr 24 hr

Sex-different effects of tributyltin on brain aromatase, estrogen receptor and retinoid X receptor gene expression in rockfish (Sebastiscus marmoratus).

PubMed

Zhang, Jiliang; Zuo, Zhenghong; Zhu, Wenwen; Sun, Ping; Wang, Chonggang

2013-09-01

Since the brain plays important roles in reproduction, the brain aromatase (Cyp19b), estrogen receptor (ER), retinoid X receptor (RXR) α and peroxisome proliferator-activated receptor γ were examined in rockfish after TBT exposure (1, 10, and 100 ng L(-1)). The results showed that the Cyp19b expression was elevated in the male rockfish, while no effect was produced in the females. Inconsistently, serum testosterone and 17β-estradiol showed no change in the males, while an increase of testosterone and a decrease of 17β-estradiol were observed in the females. TBT affected the ER expression in the males depending on the concentrations, however, no change was observed in the females. In addition, TBT elevated the RXRα expression in the males but produced an opposite effect in the females. In conclusion, TBT might have had sex-different effects on the brain Cyp19b, ER and RXR expression in rockfish, indicating a complex endocrine disrupting effect of TBT. Copyright © 2013 The Authors. Published by Elsevier Ltd.. All rights reserved.

Length Variation and Heteroplasmy Are Frequent in Mitochondrial DNA from Parthenogenetic and Bisexual Lizards (Genus Cnemidophorus)

PubMed Central

Densmore, Llewellyn D.; Wright, John W.; Brown, Wesley M.

1985-01-01

Samples of mtDNA isolated from each of 92 lizards representing all color pattern classes of Cnemidophorus tesselatus and two populations of C. tigris marmoratus were digested with the restriction endonucleases MboI, TaqI, RsaI and MspI. The mtDNA fragment sizes were compared after radioactive labeling and gel electrophoresis. Three features were notable in the comparisons: (1) there was little variation due to gain or loss of cleavage sites, (2) two fragments varied noticeably in length among the samples, one by a variable amount up to a maximum difference of ∼370 base pairs (bp) and the other by a discrete amount of 35 bp, (3) these two fragments occasionally varied within, as well as between, samples. Two regions that corresponded in size to these variants were identified by restriction endonuclease cleavage mapping. One of these is adjacent to the D-loop. Heteroplasmy, heretofore rarely observed, occurred frequently in these same two regions. Variability in the copy number of a tandemly repeated 64-bp sequence appears to be one component of the variation, but others (e.g. , base substitutions or small additions/deletions) must also be involved. The frequent occurrence of these length variations suggests either that they can be generated rapidly or that they were inherited from a highly polymorphic ancestor. The former interpretation is favored. PMID:2993100

Chemokine C-C motif ligand 33 is a key regulator of teleost fish barbel development.

PubMed

Zhou, Tao; Li, Ning; Jin, Yulin; Zeng, Qifan; Prabowo, Wendy; Liu, Yang; Tian, Changxu; Bao, Lisui; Liu, Shikai; Yuan, Zihao; Fu, Qiang; Gao, Sen; Gao, Dongya; Dunham, Rex; Shubin, Neil H; Liu, Zhanjiang

2018-05-29

Barbels are important sensory organs in teleosts, reptiles, and amphibians. The majority of ∼4,000 catfish species, such as the channel catfish ( Ictalurus punctatus ), possess abundant whisker-like barbels. However, barbel-less catfish, such as the bottlenose catfish ( Ageneiosus marmoratus ), do exist. Barbeled catfish and barbel-less catfish are ideal natural models for determination of the genomic basis for barbel development. In this work, we generated and annotated the genome sequences of the bottlenose catfish, conducted comparative and subtractive analyses using genome and transcriptome datasets, and identified differentially expressed genes during barbel regeneration. Here, we report that chemokine C-C motif ligand 33 ( ccl33 ), as a key regulator of barbel development and regeneration. It is present in barbeled fish but absent in barbel-less fish. The ccl33 genes are differentially expressed during barbel regeneration in a timing concordant with the timing of barbel regeneration. Knockout of ccl33 genes in the zebrafish ( Danio rerio ) resulted in various phenotypes, including complete loss of barbels, reduced barbel sizes, and curly barbels, suggesting that ccl33 is a key regulator of barbel development. Expression analysis indicated that paralogs of the ccl33 gene have both shared and specific expression patterns, most notably expressed highly in various parts of the head, such as the eye, brain, and mouth areas, supporting its role for barbel development.

Nervous systems in 3D: a comparison of Caridean, anomuran, and brachyuran zoea-I (Decapoda).

PubMed

Geiselbrecht, Hannes; Melzer, Roland R

2013-12-01

Using serial semi-thin sections and digital 3D-reconstructions we studied the nervous systems of zoea-I larvae in three decapod species, Hippolyte inermis (Leach, 1815), Porcellana platycheles (Pennant, 1777), and Pachygrapsus marmoratus (Fabricius, 1787). These taxa represent three decapod lineages, that is, Caridea, Anomura, and Brachyura, each characterized by specific zoea-I morphology. Special attention was paid to development of ganglia, neuropil composition, and segmental nerves. In all zoeae studied, the overall elements, for example, the segmental ganglia, their neuropils and most of the nerves of the adult decapod nervous system are present. Ongoing differentiation processes are observable as well, most obvious in segments with well-developed limbs the ganglia are in a more advanced stage of differentiation and more voluminous compared to segments with only limb buds or without externally visible limb anlagen. Intra- and interspecific comparisons indicate that neuromere differentiation thus deviates from a simple anterior-posterior gradient as, for example, posterior thoracic neuromeres are less developed than those of the pleon. In addition, the differences in the progress of the development of ganglia between the studied taxa can best be attributed to heterochronic mechanisms. Taxon and stage-specific morphologies indicate that neuronal architecture reflects both, morphogenesis to the adult stage and specific larval adaptions, and provides sets of characters relevant to understanding the corresponding phylogeny. © 2013 Wiley Periodicals, Inc.

Inferring responses to climate dynamics from historical demography in neotropical forest lizards

PubMed Central

Xue, Alexander T.; Brown, Jason L.; Alvarado-Serrano, Diego F.; Rodrigues, Miguel T.; Hickerson, Michael J.; Carnaval, Ana C.

2016-01-01

We apply a comparative framework to test for concerted demographic changes in response to climate shifts in the neotropical lowland forests, learning from the past to inform projections of the future. Using reduced genomic (SNP) data from three lizard species codistributed in Amazonia and the Atlantic Forest (Anolis punctatus, Anolis ortonii, and Polychrus marmoratus), we first reconstruct former population history and test for assemblage-level responses to cycles of moisture transport recently implicated in changes of forest distribution during the Late Quaternary. We find support for population shifts within the time frame of inferred precipitation fluctuations (the last 250,000 y) but detect idiosyncratic responses across species and uniformity of within-species responses across forest regions. These results are incongruent with expectations of concerted population expansion in response to increased rainfall and fail to detect out-of-phase demographic syndromes (expansions vs. contractions) across forest regions. Using reduced genomic data to infer species-specific demographical parameters, we then model the plausible spatial distribution of genetic diversity in the Atlantic Forest into future climates (2080) under a medium carbon emission trajectory. The models forecast very distinct trajectories for the lizard species, reflecting unique estimated population densities and dispersal abilities. Ecological and demographic constraints seemingly lead to distinct and asynchronous responses to climatic regimes in the tropics, even among similarly distributed taxa. Incorporating such constraints is key to improve modeling of the distribution of biodiversity in the past and future. PMID:27432951

Contest experience and body size affect different types of contest decisions.

PubMed

Chen, Yu-Ju; Hsu, Yuying

2016-11-01

This study examined the relative importance of contest experience and size differences to behavioral decisions over the course of contests. Using a mangrove rivulus fish, Kryptolebias marmoratus, we showed that although contest experience and size differences jointly determined contest outcomes, they affected contestants' interactions at different stages of contests. Contest experience affected behavioral decisions at earlier stages of contests, including the tendency and latency to launch attacks, the tendency to escalate contests into mutual attacks and the outcome of non-escalated contests. Once contests were escalated into mutual attacks, the degree of size difference affected the fish's persistence in escalation and chance of winning, but contest experience did not. These results support the hypothesis that contest experience modifies individuals' estimation of their fighting ability rather than their actual strength. Furthermore, (1) in contests between two naïve contestants, more than 60 % of fish that were 2-3 mm smaller than their opponent escalated the contest to physical fights, even though their larger opponents eventually won 92 % of escalated fights and (2) fish with a losing experience were very likely to retreat in the face of an opponent 2-3 mm smaller than them without escalating. The result that a 2-3 mm size advantage could not offset the influence of a losing experience on the tendency to escalate suggests that, as well as depending on body size, the fish's physical strength is influenced by other factors which require further investigation.

Inferring responses to climate dynamics from historical demography in neotropical forest lizards.

PubMed

Prates, Ivan; Xue, Alexander T; Brown, Jason L; Alvarado-Serrano, Diego F; Rodrigues, Miguel T; Hickerson, Michael J; Carnaval, Ana C

2016-07-19

We apply a comparative framework to test for concerted demographic changes in response to climate shifts in the neotropical lowland forests, learning from the past to inform projections of the future. Using reduced genomic (SNP) data from three lizard species codistributed in Amazonia and the Atlantic Forest (Anolis punctatus, Anolis ortonii, and Polychrus marmoratus), we first reconstruct former population history and test for assemblage-level responses to cycles of moisture transport recently implicated in changes of forest distribution during the Late Quaternary. We find support for population shifts within the time frame of inferred precipitation fluctuations (the last 250,000 y) but detect idiosyncratic responses across species and uniformity of within-species responses across forest regions. These results are incongruent with expectations of concerted population expansion in response to increased rainfall and fail to detect out-of-phase demographic syndromes (expansions vs. contractions) across forest regions. Using reduced genomic data to infer species-specific demographical parameters, we then model the plausible spatial distribution of genetic diversity in the Atlantic Forest into future climates (2080) under a medium carbon emission trajectory. The models forecast very distinct trajectories for the lizard species, reflecting unique estimated population densities and dispersal abilities. Ecological and demographic constraints seemingly lead to distinct and asynchronous responses to climatic regimes in the tropics, even among similarly distributed taxa. Incorporating such constraints is key to improve modeling of the distribution of biodiversity in the past and future.

Determining Individual Variation in Growth and Its Implication for Life-History and Population Processes Using the Empirical Bayes Method

PubMed Central

Vincenzi, Simone; Mangel, Marc; Crivelli, Alain J.; Munch, Stephan; Skaug, Hans J.

2014-01-01

The differences in demographic and life-history processes between organisms living in the same population have important consequences for ecological and evolutionary dynamics. Modern statistical and computational methods allow the investigation of individual and shared (among homogeneous groups) determinants of the observed variation in growth. We use an Empirical Bayes approach to estimate individual and shared variation in somatic growth using a von Bertalanffy growth model with random effects. To illustrate the power and generality of the method, we consider two populations of marble trout Salmo marmoratus living in Slovenian streams, where individually tagged fish have been sampled for more than 15 years. We use year-of-birth cohort, population density during the first year of life, and individual random effects as potential predictors of the von Bertalanffy growth function's parameters k (rate of growth) and (asymptotic size). Our results showed that size ranks were largely maintained throughout marble trout lifetime in both populations. According to the Akaike Information Criterion (AIC), the best models showed different growth patterns for year-of-birth cohorts as well as the existence of substantial individual variation in growth trajectories after accounting for the cohort effect. For both populations, models including density during the first year of life showed that growth tended to decrease with increasing population density early in life. Model validation showed that predictions of individual growth trajectories using the random-effects model were more accurate than predictions based on mean size-at-age of fish. PMID:25211603

Determining individual variation in growth and its implication for life-history and population processes using the empirical Bayes method.

PubMed

Vincenzi, Simone; Mangel, Marc; Crivelli, Alain J; Munch, Stephan; Skaug, Hans J

2014-09-01

The differences in demographic and life-history processes between organisms living in the same population have important consequences for ecological and evolutionary dynamics. Modern statistical and computational methods allow the investigation of individual and shared (among homogeneous groups) determinants of the observed variation in growth. We use an Empirical Bayes approach to estimate individual and shared variation in somatic growth using a von Bertalanffy growth model with random effects. To illustrate the power and generality of the method, we consider two populations of marble trout Salmo marmoratus living in Slovenian streams, where individually tagged fish have been sampled for more than 15 years. We use year-of-birth cohort, population density during the first year of life, and individual random effects as potential predictors of the von Bertalanffy growth function's parameters k (rate of growth) and L∞ (asymptotic size). Our results showed that size ranks were largely maintained throughout marble trout lifetime in both populations. According to the Akaike Information Criterion (AIC), the best models showed different growth patterns for year-of-birth cohorts as well as the existence of substantial individual variation in growth trajectories after accounting for the cohort effect. For both populations, models including density during the first year of life showed that growth tended to decrease with increasing population density early in life. Model validation showed that predictions of individual growth trajectories using the random-effects model were more accurate than predictions based on mean size-at-age of fish.

DNA barcoding Neotropical fishes: recent advances from the Pampa Plain, Argentina.

PubMed

Rosso, J J; Mabragaña, E; Castro, M González; de Astarloa, J M Díaz

2012-11-01

The fish fauna of the Pampa Plain, the southernmost distribution range of many Neotropical species, was barcoded in this study. COI sequences were analysed by means of distance (K2P/NJ) and character-based (ML) models, as well as the Barcode Index Number (BIN). K2P/NJ analysis was able to discriminate among all previously identified species while also revealing the likely occurrence of two cryptic species that were further supported by BIN and ML analyses. On the other hand, both BIN and ML were not able to discriminate between two species of Rineloricaria. Despite the small genetic divergence between A. cf. pampa and A. eigenmanniorum, a tight array of haplotypes was observed for each species in both the distance and character-based methods. Deep intraspecific divergences were detected in Cnesterodon decemmaculatus (5%) and Salminus brasiliensis (6%). For Salminus brasiliensis, these findings were further supported by character-based (ML) evidence and meristic and morphological data. Our results also showed that Pampa Plain representatives of Salminus brasiliensis, Rhamdia quelen, Hoplias malabaricus, Synbranchus marmoratus, Australoheros facetus, Oligosarcus jenynsii and Corydoras paleatus differed by more than 3% from their conspecifics from other parts of South America. Overall, this study was able to highlight the likely occurrence of a cryptic species in Salminus brasiliensis and also illustrate the strong geographical structure in the COI sequence composition of seven fish species from South America. © 2012 Blackwell Publishing Ltd.

Modeling habitat for Marbled Murrelets on the Siuslaw National Forest, Oregon, using lidar data

USGS Publications Warehouse

Hagar, Joan C.; Aragon, Ramiro; Haggerty, Patricia; Hollenbeck, Jeff P.

2018-03-28

Habitat models using lidar-derived variables that quantify fine-scale variation in vegetation structure can improve the accuracy of occupancy estimates for canopy-dwelling species over models that use variables derived from other remote sensing techniques. However, the ability of models developed at such a fine spatial scale to maintain accuracy at regional or larger spatial scales has not been tested. We tested the transferability of a lidar-based habitat model for the threatened Marbled Murrelet (Brachyramphus marmoratus) between two management districts within a larger regional conservation zone in coastal western Oregon. We compared the performance of the transferred model against models developed with data from the application location. The transferred model had good discrimination (AUC = 0.73) at the application location, and model performance was further improved by fitting the original model with coefficients from the application location dataset (AUC = 0.79). However, the model selection procedure indicated that neither of these transferred models were considered competitive with a model trained on local data. The new model trained on data from the application location resulted in the selection of a slightly different set of lidar metrics from the original model, but both transferred and locally trained models consistently indicated positive relationships between the probability of occupancy and lidar measures of canopy structural complexity. We conclude that while the locally trained model had superior performance for local application, the transferred model could reasonably be applied to the entire conservation zone.

Artificial barriers prevent genetic recovery of small isolated populations of a low-mobility freshwater fish.

PubMed

Coleman, R A; Gauffre, B; Pavlova, A; Beheregaray, L B; Kearns, J; Lyon, J; Sasaki, M; Leblois, R; Sgro, C; Sunnucks, P

2018-06-01

Habitat loss and fragmentation often result in small, isolated populations vulnerable to environmental disturbance and loss of genetic diversity. Low genetic diversity can increase extinction risk of small populations by elevating inbreeding and inbreeding depression, and reducing adaptive potential. Due to their linear nature and extensive use by humans, freshwater ecosystems are especially vulnerable to habitat loss and fragmentation. Although the effects of fragmentation on genetic structure have been extensively studied in migratory fishes, they are less understood in low-mobility species. We estimated impacts of instream barriers on genetic structure and diversity of the low-mobility river blackfish (Gadopsis marmoratus) within five streams separated by weirs or dams constructed 45-120 years ago. We found evidence of small-scale (<13 km) genetic structure within reaches unimpeded by barriers, as expected for a fish with low mobility. Genetic diversity was lower above barriers in small streams only, regardless of barrier age. In particular, one isolated population showed evidence of a recent bottleneck and inbreeding. Differentiation above and below the barrier (F ST  = 0.13) was greatest in this stream, but in other streams did not differ from background levels. Spatially explicit simulations suggest that short-term barrier effects would not be detected with our data set unless effective population sizes were very small (<100). Our study highlights that, in structured populations, the ability to detect short-term genetic effects from barriers is reduced and requires more genetic markers compared to panmictic populations. We also demonstrate the importance of accounting for natural population genetic structure in fragmentation studies.

Skeletal stiffening in an amphibious fish out of water is a response to increased body weight.

PubMed

Turko, Andy J; Kültz, Dietmar; Fudge, Douglas; Croll, Roger P; Smith, Frank M; Stoyek, Matthew R; Wright, Patricia A

2017-10-15

Terrestrial animals must support their bodies against gravity, while aquatic animals are effectively weightless because of buoyant support from water. Given this evolutionary history of minimal gravitational loading of fishes in water, it has been hypothesized that weight-responsive musculoskeletal systems evolved during the tetrapod invasion of land and are thus absent in fishes. Amphibious fishes, however, experience increased effective weight when out of water - are these fishes responsive to gravitational loading? Contrary to the tetrapod-origin hypothesis, we found that terrestrial acclimation reversibly increased gill arch stiffness (∼60% increase) in the amphibious fish Kryptolebias marmoratus when loaded normally by gravity, but not under simulated microgravity. Quantitative proteomics analysis revealed that this change in mechanical properties occurred via increased abundance of proteins responsible for bone mineralization in other fishes as well as in tetrapods. Type X collagen, associated with endochondral bone growth, increased in abundance almost ninefold after terrestrial acclimation. Collagen isoforms known to promote extracellular matrix cross-linking and cause tissue stiffening, such as types IX and XII collagen, also increased in abundance. Finally, more densely packed collagen fibrils in both gill arches and filaments were observed microscopically in terrestrially acclimated fish. Our results demonstrate that the mechanical properties of the fish musculoskeletal system can be fine-tuned in response to changes in effective body weight using biochemical pathways similar to those in mammals, suggesting that weight sensing is an ancestral vertebrate trait rather than a tetrapod innovation. © 2017. Published by The Company of Biologists Ltd.

Using resampling to assess reliability of audio-visual survey strategies for marbled murrelets at inland forest sites

USGS Publications Warehouse

Jodice, Patrick G.R.; Garman, S.L.; Collopy, Michael W.

2001-01-01

Marbled Murrelets (Brachyramphus marmoratus) are threatened seabirds that nest in coastal old-growth coniferous forests throughout much of their breeding range. Currently, observer-based audio-visual surveys are conducted at inland forest sites during the breeding season primarily to determine nesting distribution and breeding status and are being used to estimate temporal or spatial trends in murrelet detections. Our goal was to assess the feasibility of using audio-visual survey data for such monitoring. We used an intensive field-based survey effort to record daily murrelet detections at seven survey stations in the Oregon Coast Range. We then used computer-aided resampling techniques to assess the effectiveness of twelve survey strategies with varying scheduling and a sampling intensity of 4-14 surveys per breeding season to estimate known means and SDs of murrelet detections. Most survey strategies we tested failed to provide estimates of detection means and SDs that were within A?20% of actual means and SDs. Estimates of daily detections were, however, frequently estimated to within A?50% of field data with sampling efforts of 14 days/breeding season. Additional resampling analyses with statistically generated detection data indicated that the temporal variability in detection data had a great effect on the reliability of the mean and SD estimates calculated from the twelve survey strategies, while the value of the mean had little effect. Effectiveness at estimating multi-year trends in detection data was similarly poor, indicating that audio-visual surveys might be reliably used to estimate annual declines in murrelet detections of the order of 50% per year.

Mechanisms of population differentiation in marbled murrelets: historical versus contemporary processes

USGS Publications Warehouse

Congdon, B.C.; Piatt, John F.; Martin, Kathy; Friesen, Vicki L.

2000-01-01

Mechanisms of population differentiation in highly vagile species such as seabirds are poorly understood. Previous studies of marbled murrelets (Brachyramphus marmoratus; Charadriiformes: Alcidae) found significant population genetic structure, but could not determine whether this structure is due to historical vicariance (e.g., due to Pleistocene glaciers), isolation by distance, drift or selection in peripheral populations, or nesting habitat selection. To discriminate among these possibilities, we analyzed sequence variation in nine nuclear introns from 120 marbled murrelets sampled from British Columbia to the western Aleutian Islands. Mismatch distributions indicated that murrelets underwent at least one population expansion during the Pleistocene and probably are not in genetic equilibrium. Maximum-likelihood analysis of allele frequencies suggested that murrelets from 'mainland' sites (from the Alaskan Peninsula east) are genetically different from those in the Aleutians and that these two lineages diverged prior to the last glaciation. Analyses of molecular variance, as well as estimates of gene flow derived using coalescent theory, indicate that population genetic structure is best explained by peripheral isolation of murrelets in the Aleutian Islands, rather than by selection associated with different nesting habitats. No isolation-by-distance effects could be detected. Our results are consistent with a rapid expansion of murrelets from a single refugium during the early-mid Pleistocene, subsequent isolation and divergence in two or more refugia during the final Pleistocene glacial advance, and secondary contact following retreat of the ice sheets. Population genetic structure now appears to be maintained by distance effects combined with small populations and a highly fragmented habitat in the Aleutian Islands.

The use of environmental DNA in invasive species surveillance of the Great Lakes commercial bait trade.

PubMed

Nathan, Lucas R; Jerde, Christopher L; Budny, Michelle L; Mahon, Andrew R

2015-04-01

Over 180 non-native species have been introduced in the Laurentian Great Lakes region, many posing threats to native species and ecosystem functioning. One potential pathway for introductions is the commercial bait trade; unknowing or unconcerned anglers commonly release unused bait into aquatic systems. Previous surveillance efforts of this pathway relied on visual inspection of bait stocks in retail shops, which can be time and cost prohibitive and requires a trained individual that can rapidly and accurately identify cryptic species. Environmental DNA (eDNA) surveillance, a molecular tool that has been used for surveillance in aquatic environments, can be used to efficiently detect species at low abundances. We collected and analyzed 576 eDNA samples from 525 retail bait shops throughout the Laurentian Great Lake states. We used eDNA techniques to screen samples for multiple aquatic invasive species (AIS) that could be transported in the bait trade, including bighead (Hypophthalmichthys nobilis) and silver carp (H. molitrix), round goby (Neogobius melanostomus), tubenose goby (Proterorhinus marmoratus), Eurasian rudd (Scardinius erythrophthalmus), and goldfish (Carassius auratus). Twenty-seven samples were positive for at least one target species (4.7% of samples), and all target species were found at least once, except bighead carp. Despite current regulations, the bait trade remains a potential pathway for invasive species introductions in the Great Lakes region. Alterations to existing management strategies regarding the collection, transportation, and use of live bait are warranted, including new and updated regulations, to prevent future introductions of invasive species in the Great Lakes via the bait trade. © 2014 Society for Conservation Biology.

Diets and diet overlap of nonindigenous gobies and small benthic native fishes co-inhabiting the St. Clair River, Michigan

USGS Publications Warehouse

French, John R. P.; Jude, David J.

2001-01-01

Round gobies (Neogobius melanostomus), after successfully reproducing in the early 1990s, decimated populations of mottled sculpins (Cottus bairdi) and possibly logperch (Percina caprodes) in the St. Clair River. Studies were conducted during 1994 to determine whether diets of round and tubenose (Proterorhinus marmoratus) gobies overlapped with those of native forage fishes. In the nearshore zone (depth ≤ 1 m), round and tubenose gobies, logperch, and rainbow darters (Etheostoma caeruleum) of similar sizes (total lengths < 75 mm) consumed mainly small-sized macroinvertebrates (dipterans, Caenis, and amphipods) during June 1994. Logperch and rainbow darters were present in the nearshore zone only during this month. At the crest of the channel slope (depth = 3 m), round gobies and northern madtoms (Noturus stigmosus) ate mostly ephemeropteran nymphs (Hexagenia and Baetisca), while predation on zebra mussels (Dreissena polymorpha) and other mollusks by round gobies was minimal. Northern madtoms did not feed on mollusks. Diet overlap between round gobies and native fishes was not observed at the channel slope (depth = 5 m and 7 m) due to heavy predation on mollusks by round gobies. Young-of-the-year (YOY) round gobies migrated to deeper water in autumn and became prey of mottled sculpins and northern madtoms. Eggs and YOY of mottled sculpins may have become vulnerable to predation by both round gobies and native fishes in deeper water, since adult mottled sculpins were apparently confined to the channel with limited home range because aggressive round gobies occupied preferred shallow habitat, including spawning sites.

Status and trend of the Kittlitz's Murrelet Brachyramphus brevirostris in Glacier Bay, Alaska

USGS Publications Warehouse

Piatt, John F.; Arimitsu, Mayumi L.; Drew, Gary S.; Madison, Erica N.; Bodkin, James L.; Romano, Marc D.

2011-01-01

We conducted standardized surveys for marine birds in Glacier Bay in seven years between 1991 and 2008. From our most recent survey, a combination of line- and strip-transect methods completed in 2008, we estimated that 4981 (95% CI 1293–8670) Kittlitz’s Murrelets Brachyramphus brevirostris resided in Glacier Bay during the month of June, together with 12 195 (5607–18 783) Marbled Murrelets B. marmoratus. When counts were prorated to assign unidentified Brachyramphus murrelets to species, population estimates increased to 5641 Kittlitz’s Murrelets and 13 810 Marbled Murrelets. Our surveys of bird numbers in Glacier Bay between 1991 and 2008 revealed that Kittlitz’s Murrelet declined by ≥85% during this period. Trend analysis suggested a rate of decline between -10.7% and -14.4% per year. No direct human impacts (e.g., bycatch, oil pollution, vessel disturbance) in our study area could fully account for a decline of this magnitude. Widespread declines of Brachyramphus murrelets and Harbor Seals Phoca vitulina in the Gulf of Alaska during the 1980s-1990s suggest large-scale influences on these marine predators, perhaps related to climate-mediated cycles in food supply. Other natural factors that may impact Glacier Bay populations include predation by avian and terrestrial predators, widespread glacial retreat and its effect on nesting and foraging habitats, and competition for food with marine predators whose abundance in Glacier Bay has increased markedly in recent years (Humpback Whales Megaptera novaeangliae and Steller Sea Lions Eumetopias jubatus).

Disturbance of a rare seabird by ship-based tourism in a marine protected area.

PubMed

Marcella, Timothy K; Gende, Scott M; Roby, Daniel D; Allignol, Arthur

2017-01-01

Managers of marine protected areas (MPAs) must often seek ways to allow for visitation while minimizing impacts to the resources they are intended to protect. Using shipboard observers, we quantified the "zone of disturbance" for Kittlitz's and marbled murrelets (Brachyramphus brevirostris and B. marmoratus) exposed to large cruise ships traveling through Glacier Bay National Park, one of the largest MPAs in North America. In the upper reaches of Glacier Bay, where Kittlitz's murrelets predominated, binary logistic regression models predicted that 61% of all murrelets within 850 m perpendicular distance of a cruise ship were disturbed (defined as flushing or diving), whereas in the lower reaches, where marbled murrelets predominated, this percentage increased to 72%. Using survival analysis, murrelets in both reaches were found to react at greater distances when ships approached indirectly, presumably because of the ship's larger profile, suggesting murrelets responded to visual rather than audio cues. No management-relevant covariates (e.g., ship velocity, route distance from shore) were found to be important predictors of disturbance, as distance from ship to murrelet accounted for > 90% of the explained variation in murrelet response. Utilizing previously published murrelet density estimates from Glacier Bay, and applying an average empirical disturbance probability (68%) out to 850 m from a cruise ship's typical route, we estimated that a minimum of 9.8-19.6% of all murrelets in Glacier Bay are disturbed per ship entry. Whether these disturbance levels are inconsistent with Park management objectives, which include conserving wildlife as well as providing opportunities for visitation, depends in large part on whether disturbance events caused by cruise ships have impacts on murrelet fitness, which remains uncertain.

Phylogenetic relationships within the Alcidae (Charadriiformes: Aves) inferred from total molecular evidence

USGS Publications Warehouse

Friesen, Vicki L.; Baker, Allan J.; Piatt, John F.

1996-01-01

The Alcidae is a unique assemblage of Northern Hemisphere seabirds that forage by "flying" underwater. Despite obvious affinities among the species, their evolutionary relationships are unclear. We analyzed nucleotide sequences of 1,045 base pairs of the mitochondrial cytochrome b gene and allelic profiles for 37 allozyme loci in all 22 extant species. Trees were constructed on independent and combined data sets using maximum parsimony and distance methods that correct for superimposed changes. Alternative methods of analysis produced only minor differences in relationships that were supported strongly by bootstrapping or standard error tests. Combining sequence and allozyme data into a single analysis provided the greatest number of relationships receiving strong support. Addition of published morphological and ecological data did not improve support for any additional relationship. All analyses grouped species into six distinct lineages: (1) the dovekie (Alle alle) and auks, (2) guillemots, (3) brachyramphine murrelets, (4) synthliboramphine murrelets, (5) true auklets, and (6) the rhinoceros auklet (Cerorhinca monocerata) and puffins. The two murres (genus Uria) were sister taxa, and the black guillemot (Cepphus grylle) was basal to the other guillemots. The Asian subspecies of the marbled murrelet (Brachyramphus marmoratus perdix) was the most divergent brachyramphine murrelet, and two distinct lineages occurred within the synthliboramphine murrelets. Cassin's auklet (Ptychoramphus aleuticus) and the rhinoceros auklet were basal to the other auklets and puffins, respectively, and the Atlantic (Fratercula arctica) and horned (Fratercula corniculata) puffins were sister taxa. Several relationships among tribes, among the dovekie and auks, and among the auklets could not be resolved but resembled "star" phylogenies indicative of adaptive radiations at different depths within the trees.

Expansion of tubenose gobies Proterorhinus semilunaris into western Lake Erie and potential effects on native species

USGS Publications Warehouse

Kocovsky, P.M.; Tallman, J.A.; Jude, D.J.; Murphy, D.M.; Brown, J.E.; Stepien, C.A.

2011-01-01

The Eurasian freshwater tubenose goby Proterorhinus semilunaris (formerly Proterorhinus marmoratus) invaded the Laurentian Great Lakes in the 1990s, presumably via ballast water from transoceanic cargo ships. Tubenose gobies spread throughout Lake St. Clair, its tributaries, and the Detroit River system, and also are present in the Duluth-Superior harbor of Lake Superior. Using seines and bottom trawls, we collected 113 tubenose gobies between July 2007 and August 2009 at several locations in western Lake Erie. The number and range of sizes of specimens collected suggest that that tubenose gobies have become established and self-sustaining in the western basin of Lake Erie. Tubenose gobies reached maximum densities in sheltered areas with abundant macrophyte growth, which also is their common habitat in native northern Black Sea populations. The diet of tubenose gobies was almost exclusively invertebrates, suggesting dietary overlap with other benthic fishes, such as darters (Etheostoma spp. and Percina sp.), madtoms (Noturus spp.), and sculpins (Cottus spp.). A single mitochondrial DNA haplotype was identified, which is the most common haplotype found in the original colonization area in the Lake St. Clair region, suggesting a founder effect. Tubenose gobies, like round gobies Neogobius melanostomus, have early life stages that drift owing to vertical migration, which probably allowed them to spread from areas of colonization. The Lake St. Clair-Lake Erie corridor appears to have served as an avenue for them to spread to the western basin of Lake Erie, and abundance of shallow macrophyte-rich habitats may be a key factor facilitating their further expansion within Lake Erie and the remainder of the Laurentian Great Lakes.

Meeting reproductive demands in a dynamic upwelling system: Foraging strategies of a pursuit-diving seabird, the marbled murrelet

USGS Publications Warehouse

Peery, M.Z.; Newman, S.H.; Storlazzi, C.D.; Beissinger, S.R.

2009-01-01

Seabirds maintain plasticity in their foraging behavior to cope with energy demands and foraging constraints that vary over the reproductive cycle, but behavioral studies comparing breeding and nonbreeding individuals are rare. Here we characterize how Marbled Murrelets (Brachyramphus marmoratus) adjust their foraging effort in response to changes in reproductive demands in an upwelling system in central California. We radio-marked 32 murrelets of known reproductive status (9 breeders, 12 potential breeders, and 11 nonbreeders) and estimated both foraging ranges and diving rates during the breeding season. Murrelets spent more time diving during upwelling than oceanographic relaxation, increased their foraging ranges as the duration of relaxation grew longer, and reduced their foraging ranges after transitions to upwelling. When not incubating, murrelets moved in a circadian pattern, spending nighttime hours resting near flyways used to reach nesting habitat and foraging during the daytime an average of 5.7 km (SD 6.7 km) from nighttime locations. Breeders foraged close to nesting habitat once they initiated nesting and nest attendance was at a maximum, and then resumed traveling longer distances following the completion of nesting. Nonbreeders had similar nighttime and daytime distributions and tended to be located farther from inland flyways. Breeders increased the amount of time they spent diving by 71-73% when they had an active nest by increasing the number of dives rather than by increasing the frequency of anaerobiosis. Thus, to meet reproductive demands during nesting, murrelets adopted a combined strategy of reducing energy expended commuting to foraging sites and increasing aerobic dive rates. ?? 2009 by The Cooper Ornithological Society. All rights reserved.

Immunohistochemical analysis of cytochrome P4501A induction in organs and cell types of Rivulus marmoratus exposed to waterborne 2,3,7,8-tetrachlorodibenzo-p-dioxin

DOE Office of Scientific and Technical Information (OSTI.GOV)

Stegeman, J.; Smolowitz, R.; Burnett, K.

1994-12-31

Identifying target cells and organs is critical to establishing the sites and mechanisms of toxicity of Ah-receptor agonists. Previous studies have described the localization of CYPLA induced in multiple organs of fish exposed to Ah-receptor agonists. Here the authors compare the responses in multiple cell types and organs of small fish (Rivulus) exposed to waterborne TCDD. Adult fish were exposed to TCDD at concentrations from 0.01 to 10 ng/liter for 48 hours, then prepared and analyzed by immunohistochemistry with monoclonal antibody to teleost CYPIAI. At the highest dose profound induction was detected in virtually every organ. Structures staining intensely were:more » nasal and cephalic chemoreceptors, including sensory and basal cells; superficial cells in skin and pharynx; cartilage cells (chondrocytes) in the head, gills, growth plates and fins; epithelial and endothelial cells of liver, gut, kidney, and gill; pseudobranch vessels and glandular cells; eye lens epithelium; endothelium in vessels of eye, brain, skin, muscle, thymus and gonad. Lesser concentrations of TCDD elicited less strong responses, and control fish showed mild staining only in cartilage structures. The dose-dependent patterns of induction differed between different cell types. Responsive cells identified is these fish indicate sites where toxicity associated with Ah-receptor agonists or with CYPLA function may be expressed.« less

Natural Distribution of Parasitoids of Larvae of the Fall Armyworm, Spodoptera frugiperda, in Argentina

PubMed Central

Gabriela Murúa, M.; Molina-Ochoa, Jaime; Fidalgo, Patricio

2009-01-01

To develop a better understanding of the natural distribution of the fall armyworm, Spodoptera frugiperda (Smith) (Lepidoptera: Noctuidae), and to update the knowledge of the incidence of its complex of parasitoids. S. frugiperda, samplings in whorl-stage corn were carried out in provinces of Argentina from 1999 to 2003. S. frugiperda larvae were collected from corn in localities of the provinces of Tucumán, Salta, Jujuy, Santiago del Estero, La Rioja, Córdoba, San Luis, Chaco and Misiones. In each locality 30 corn plants were sampled and only larvae located in those plants were collected. The parasitoids that emerged from S. frugiperda larvae were identified and counted. The abundance of the parasitoids and the parasitism rate were estimated. The S. frugiperda parasitoids collected were Campoletis grioti (Blanchard) (Hymenoptera: Ichneumonidae), Chelonus insularis (Cresson) (Hymenoptera: Braconidae), Archytas marmoratus (Townsend) (Diptera Tachinidae) and/or A. incertus (Macquart), Ophion sp. (Hymenoptera: Ichneumonidae), Euplectrus platyhypenae Howard (Hymenoptera: Eulophidae), and Incamyia chilensis (Aldrich) (Diptera Tachinidae). C. grioti was the most abundant and frequent during the five-year survey. Similar diversity of parasitoids was obtained in all the provinces, with the exception of I. chilensis and E. platyhypenae that were recovered only in the province of Salta. In the Northwestern region, in Tucumán, C. grioti and species of Archytas were the most abundant and frequent parasitoids. On the contrary, in Salta and Jujuy Ch. insularis was the parasitoid most abundant and frequently recovered. The parasitism rate obtained in Tucumán, Salta and Jujuy provinces were 21.96%, 17.87% and 6.63% respectively with an average of 18.93%. These results demonstrate that hymenopteran and dipteran parasitoids of S. frugiperda occurred differentially throughout the Argentinian provinces and played an important role on the natural control of the S. frugiperda larval

Constraints upon the Response of Fish and Crayfish to Environmental Flow Releases in a Regulated Headwater Stream Network

PubMed Central

Chester, Edwin T.; Matthews, Ty G.; Howson, Travis J.; Johnston, Kerrylyn; Mackie, Jonathon K.; Strachan, Scott R.; Robson, Belinda J.

2014-01-01

In dry climate zones, headwater streams are often regulated for water extraction causing intermittency in perennial streams and prolonged drying in intermittent streams. Regulation thereby reduces aquatic habitat downstream of weirs that also form barriers to migration by stream fauna. Environmental flow releases may restore streamflow in rivers, but are rarely applied to headwaters. We sampled fish and crayfish in four regulated headwater streams before and after the release of summer-autumn environmental flows, and in four nearby unregulated streams, to determine whether their abundances increased in response to flow releases. Historical data of fish and crayfish occurrence spanning a 30 year period was compared with contemporary data (electrofishing surveys, Victoria Range, Australia; summer 2008 to summer 2010) to assess the longer–term effects of regulation and drought. Although fish were recorded in regulated streams before 1996, they were not recorded in the present study upstream or downstream of weirs despite recent flow releases. Crayfish (Geocharax sp. nov. 1) remained in the regulated streams throughout the study, but did not become more abundant in response to flow releases. In contrast, native fish (Gadopsis marmoratus, Galaxias oliros, Galaxias maculatus) and crayfish remained present in unregulated streams, despite prolonged drought conditions during 2006–2010, and the assemblages of each of these streams remained essentially unchanged over the 30 year period. Flow release volumes may have been too small or have operated for an insufficient time to allow fish to recolonise regulated streams. Barriers to dispersal may also be preventing recolonisation. Indefinite continuation of annual flow releases, that prevent the unnatural cessation of flow caused by weirs, may eventually facilitate upstream movement of fish and crayfish in regulated channels; but other human–made dispersal barriers downstream need to be identified and ameliorated, to allow

Innocent until proven guilty? Stable coexistence of alien rainbow trout and native marble trout in a Slovenian stream

NASA Astrophysics Data System (ADS)

Vincenzi, Simone; Crivelli, Alain J.; Jesensek, Dusan; Rossi, Gianluigi; de Leo, Giulio A.

2011-01-01

To understand the consequences of the invasion of the nonnative rainbow trout Oncorhynchus mykiss on the native marble trout Salmo marmoratus, we compared two distinct headwater sectors where marble trout occur in allopatry (MTa) or sympatry (MTs) with rainbow trout (RTs) in the Idrijca River (Slovenia). Using data from field surveys from 2002 to 2009, with biannual (June and September) sampling and tagging from June 2004 onwards, we analyzed body growth and survival probabilities of marble trout in each stream sector. Density of age-0 in September over the study period was greater for MTs than MTa and very similar between MTs and RTs, while density of trout ≥age-1 was similar for MTa and MTs and greater than density of RTs. Monthly apparent survival probabilities were slightly higher in MTa than in MTs, while RTs showed a lower survival than MTs. Mean weight of marble and rainbow trout aged 0+ in September was negatively related to cohort density for both marble and rainbow trout, but the relationship was not significantly different between MTs and MTa. No clear depression of body growth of sympatric marble trout between sampling intervals was observed. Despite a later emergence, mean weight of RTs cohorts at age 0+ in September was significantly higher than weight of both MTs and MTa. The establishment of a self-sustaining population of rainbow trout does not have a significant impact on body growth and survival probabilities of sympatric marble trout. The numerical dominance of rainbow trout in streams at lower altitudes seem to suggest that while the low summer flow pattern of Slovenian streams is favorable for rainbow trout invasion, the adaptation of marble trout to headwater environments may limit the invasion success of rainbow trout in headwaters.

Phylogeny of frogs from the genus Physalaemus (Anura, Leptodactylidae) inferred from mitochondrial and nuclear gene sequences.

PubMed

Lourenço, Luciana B; Targueta, Cíntia P; Baldo, Diego; Nascimento, Juliana; Garcia, Paulo C A; Andrade, Gilda V; Haddad, Célio F B; Recco-Pimentel, Shirlei M

2015-11-01

Although some species groups have been recognized in the leiuperine genus Physalaemus, no phylogenetic analysis has previously been performed. Here, we provide a phylogenetic study based on mitochondrial and nuclear DNA sequences from 41 of the 46 species of Physalaemus. We employed the parsimony criterion using the software TNT and POY and the Bayesian criterion using the software MrBayes. Two major clades were recovered inside the monophyletic Physalaemus: (i) the highly supported Physalaemus signifer Clade, which included P. nattereri and the species previously placed in the P. deimaticus and P. signifer Groups; and (ii) the Physalaemus cuvieri Clade, which included the remaining species of Physalaemus. Five species groups were recognized in the P. cuvieri Clade: the P. biligonigerus Group, the P. cuvieri Group, the P. henselii Group, the P. gracilis Group and the P. olfersii Group. The P. gracilis Species Group was the same as that previously proposed by Nascimento et al. (2005). The P. henselii Group includes P. fernandezae and P. henselii, and was the sister group of a clade that comprised the remaining species of the P. cuvieri Clade. The P. olfersii Group included P. olfersii, P. soaresi, P. maximus, P. feioi and P. lateristriga. The P. biligonigerus Species Group was composed of P. biligonigerus, P. marmoratus, P. santafecinus and P. riograndensis. The P. cuvieri Group inferred here differed from that recognized by Nascimento et al. (2005) only by the inclusion of P. albifrons and the exclusion of P. cicada. The paraphyly of P. cuvieri with respect to P. ephippifer was inferred in all the analyses. Distinct genetic lineages were recognized among individuals currently identified as P. cuvieri and they were congruent with cytogenetic differences reported previously, supporting the hypothesis of occurrence of formally unnamed species. Copyright © 2015 Elsevier Inc. All rights reserved.

Radio-telemetry evidence of re-nesting in the same season by the Marbled Murrelet

USGS Publications Warehouse

Hebert, P.N.; Carter, H.R.; Golightly, R.T.; Orthmeyer, D.L.

2003-01-01

Unlike other alcids, laying of replacement eggs has not been well documented in Brachyramphus murrelets. Observations of two radio-marked Marbled Murrelets (Brachyramphus marmoratus) in northern California during 2001 and 2002 suggested that they can re-lay in the same breeding season. In 2001, aircraft telemetry first detected a male Marbled Murrelet at a forested inland location on 17 May. This bird alternated 24h incubation bouts with 24h at sea periods until 29 May, when data logger recordings indicated that the bird arrived at the nest at 05.17 h (PDT), but left at 05.32 h. This nesting effort had apparently failed. Sixteen days later, on 14 June this murrelet arrived in the vicinity of the first nest site at 05.19 h and remained there until 18.57 h that same evening and then left. We suspected that this event represented a second breeding effort that also failed, either near or at the site of the first effort. In 2002 a female Marbled Murrelet, first detected inland on 13 June by aircraft telemetry, alternated on the nest one day and at sea the next until 23 June when the breeding effort is presumed to have failed. This bird was again detected inland 21 July, and alternated on the nest one day and at sea the following day until 3 August, when the radio-transmitter fell off the bird. Video recordings at the nest site indicated this second nesting attempt continued until 1 September, when the chick died of unknown causes. As in other alcids, re-laying apparently occurred 2-4 weeks after failure of the first eggs, either near or at the site of first eggs. Re-nesting may be frequent in murrelets, given the high rates of breeding failure reported. Received 24 November 2002, accepted 7 Febraary 2003.

"Mangrove 'killifish': an exemplar of integrative biology": introduction to the symposium.

PubMed

Orlando, Edward F

2012-12-01

The mangrove rivulus, Kryptolebias marmoratus, (hereafter, rivulus) is one of the only two vertebrates known to self-fertilize, with the other being a recently named close relative, Kryptolebias hermaphroditus (Tatarenkov et al. 2012). Rivulus is also the first fish species found to have environmental sex determination, whereby lower temperatures inhibit ovarian development, thus providing one potential route that avoids inbreeding depression (Harrington 1967; Conover 2004). Wild rivulus exist as androdioecious populations in which both hermaphrodites and, although relatively rare, males are found (Taylor 2000). In the laboratory, individual adult rivulus can produce isogenic embryos. Under as yet unknown environmental conditions, males develop and outcrossing between the hermaphrodites and males occurs (Taylor 2000; Mackiewicz et al. 2006a, 2006b). It is intriguing to consider the behavioral, neurological, and endocrinological control necessary to accommodate this reproductive strategy (Sakakura et al. 2006; Orlando et al. 2006; Earley et al. 2008). In addition to environmental sex determination and androdioecious reproduction, rivulus is also known to emerge from its aquatic surroundings and assume a transitory, terrestrial existence (Ong et al. 2007; Taylor et al. 2008; Cooper et al. 2012). Rivulus is an emerging and potentially powerful model for integrative and comparative biological research and, in part, this emergence has been catalyzed by this first symposium on its biology. The well-attended symposium comprised 11 speakers, which included four women and seven men, with academic ranks ranging from postdoctoral fellow to full professor, who came from four countries. This symposium will help drive future research within this taxon and will facilitate collaborations among researchers. It has already facilitated networking between heads of laboratories and current and potential future postdoctoral fellows and students. The organizing committee looks forward to

Disturbance of a rare seabird by ship-based tourism in a marine protected area

PubMed Central

Allignol, Arthur

2017-01-01

Managers of marine protected areas (MPAs) must often seek ways to allow for visitation while minimizing impacts to the resources they are intended to protect. Using shipboard observers, we quantified the “zone of disturbance” for Kittlitz’s and marbled murrelets (Brachyramphus brevirostris and B. marmoratus) exposed to large cruise ships traveling through Glacier Bay National Park, one of the largest MPAs in North America. In the upper reaches of Glacier Bay, where Kittlitz’s murrelets predominated, binary logistic regression models predicted that 61% of all murrelets within 850 m perpendicular distance of a cruise ship were disturbed (defined as flushing or diving), whereas in the lower reaches, where marbled murrelets predominated, this percentage increased to 72%. Using survival analysis, murrelets in both reaches were found to react at greater distances when ships approached indirectly, presumably because of the ship’s larger profile, suggesting murrelets responded to visual rather than audio cues. No management-relevant covariates (e.g., ship velocity, route distance from shore) were found to be important predictors of disturbance, as distance from ship to murrelet accounted for > 90% of the explained variation in murrelet response. Utilizing previously published murrelet density estimates from Glacier Bay, and applying an average empirical disturbance probability (68%) out to 850 m from a cruise ship’s typical route, we estimated that a minimum of 9.8–19.6% of all murrelets in Glacier Bay are disturbed per ship entry. Whether these disturbance levels are inconsistent with Park management objectives, which include conserving wildlife as well as providing opportunities for visitation, depends in large part on whether disturbance events caused by cruise ships have impacts on murrelet fitness, which remains uncertain. PMID:28489902

Disturbance of a rare seabird by ship-based tourism in a marine protected area

USGS Publications Warehouse

Marcella, Timothy K.; Gende, Scott M.; Roby, Daniel D.; Allignol, Arthur

2017-01-01

Managers of marine protected areas (MPAs) must often seek ways to allow for visitation while minimizing impacts to the resources they are intended to protect. Using shipboard observers, we quantified the “zone of disturbance” for Kittlitz’s and marbled murrelets (Brachyramphus brevirostris and B. marmoratus) exposed to large cruise ships traveling through Glacier Bay National Park, one of the largest MPAs in North America. In the upper reaches of Glacier Bay, where Kittlitz’s murrelets predominated, binary logistic regression models predicted that 61% of all murrelets within 850 m perpendicular distance of a cruise ship were disturbed (defined as flushing or diving), whereas in the lower reaches, where marbled murrelets predominated, this percentage increased to 72%. Using survival analysis, murrelets in both reaches were found to react at greater distances when ships approached indirectly, presumably because of the ship’s larger profile, suggesting murrelets responded to visual rather than audio cues. No management-relevant covariates (e.g., ship velocity, route distance from shore) were found to be important predictors of disturbance, as distance from ship to murrelet accounted for > 90% of the explained variation in murrelet response. Utilizing previously published murrelet density estimates from Glacier Bay, and applying an average empirical disturbance probability (68%) out to 850 m from a cruise ship’s typical route, we estimated that a minimum of 9.8–19.6% of all murrelets in Glacier Bay are disturbed per ship entry. Whether these disturbance levels are inconsistent with Park management objectives, which include conserving wildlife as well as providing opportunities for visitation, depends in large part on whether disturbance events caused by cruise ships have impacts on murrelet fitness, which remains uncertain.

Comparison of pigment cell ultrastructure and organisation in the dermis of marble trout and brown trout, and first description of erythrophore ultrastructure in salmonids

PubMed Central

Djurdjevič, Ida; Kreft, Mateja Erdani; Sušnik Bajec, Simona

2015-01-01

Skin pigmentation in animals is an important trait with many functions. The present study focused on two closely related salmonid species, marble trout (Salmo marmoratus) and brown trout (S. trutta), which display an uncommon labyrinthine (marble-like) and spot skin pattern, respectively. To determine the role of chromatophore type in the different formation of skin pigment patterns in the two species, the distribution and ultrastructure of chromatophores was examined with light microscopy and transmission electron microscopy. The presence of three types of chromatophores in trout skin was confirmed: melanophores; xanthophores; and iridophores. In addition, using correlative microscopy, erythrophore ultrastructure in salmonids was described for the first time. Two types of erythrophores are distinguished, both located exclusively in the skin of brown trout: type 1 in black spot skin sections similar to xanthophores; and type 2 with a unique ultrastructure, located only in red spot skin sections. Morphologically, the difference between the light and dark pigmentation of trout skin depends primarily on the position and density of melanophores, in the dark region covering other chromatophores, and in the light region with the iridophores and xanthophores usually exposed. With larger amounts of melanophores, absence of xanthophores and presence of erythrophores type 1 and type L iridophores in the black spot compared with the light regions and the presence of erythrophores type 2 in the red spot, a higher level of pigment cell organisation in the skin of brown trout compared with that of marble trout was demonstrated. Even though the skin regions with chromatophores were well defined, not all the chromatophores were in direct contact, either homophilically or heterophilically, with each other. In addition to short-range interactions, an important role of the cellular environment and long-range interactions between chromatophores in promoting adult pigment pattern

Comparison of pigment cell ultrastructure and organisation in the dermis of marble trout and brown trout, and first description of erythrophore ultrastructure in salmonids.

PubMed

Djurdjevič, Ida; Kreft, Mateja Erdani; Sušnik Bajec, Simona

2015-11-01

Skin pigmentation in animals is an important trait with many functions. The present study focused on two closely related salmonid species, marble trout (Salmo marmoratus) and brown trout (S. trutta), which display an uncommon labyrinthine (marble-like) and spot skin pattern, respectively. To determine the role of chromatophore type in the different formation of skin pigment patterns in the two species, the distribution and ultrastructure of chromatophores was examined with light microscopy and transmission electron microscopy. The presence of three types of chromatophores in trout skin was confirmed: melanophores; xanthophores; and iridophores. In addition, using correlative microscopy, erythrophore ultrastructure in salmonids was described for the first time. Two types of erythrophores are distinguished, both located exclusively in the skin of brown trout: type 1 in black spot skin sections similar to xanthophores; and type 2 with a unique ultrastructure, located only in red spot skin sections. Morphologically, the difference between the light and dark pigmentation of trout skin depends primarily on the position and density of melanophores, in the dark region covering other chromatophores, and in the light region with the iridophores and xanthophores usually exposed. With larger amounts of melanophores, absence of xanthophores and presence of erythrophores type 1 and type L iridophores in the black spot compared with the light regions and the presence of erythrophores type 2 in the red spot, a higher level of pigment cell organisation in the skin of brown trout compared with that of marble trout was demonstrated. Even though the skin regions with chromatophores were well defined, not all the chromatophores were in direct contact, either homophilically or heterophilically, with each other. In addition to short-range interactions, an important role of the cellular environment and long-range interactions between chromatophores in promoting adult pigment pattern

Estimation of Coast-Wide Population Trends of Marbled Murrelets in Canada Using a Bayesian Hierarchical Model

PubMed Central

Schroeder, Bernard K.; Lindsay, David J.; Faust, Deborah A.

2015-01-01

Species at risk with secretive breeding behaviours, low densities, and wide geographic range pose a significant challenge to conservation actions because population trends are difficult to detect. Such is the case with the Marbled Murrelet (Brachyramphus marmoratus), a seabird listed as ‘Threatened’ by the Species at Risk Act in Canada largely due to the loss of its old growth forest nesting habitat. We report the first estimates of population trend of Marbled Murrelets in Canada derived from a monitoring program that uses marine radar to detect birds as they enter forest watersheds during 923 dawn surveys at 58 radar monitoring stations within the six Marbled Murrelet Conservation Regions on coastal British Columbia, Canada, 1996–2013. Temporal trends in radar counts were analyzed with a hierarchical Bayesian multivariate modeling approach that controlled for variation in tilt of the radar unit and day of year, included year-specific deviations from the overall trend (‘year effects’), and allowed for trends to be estimated at three spatial scales. A negative overall trend of -1.6%/yr (95% credibility interval: -3.2%, 0.01%) indicated moderate evidence for a coast-wide decline, although trends varied strongly among the six conservation regions. Negative annual trends were detected in East Vancouver Island (-9%/yr) and South Mainland Coast (-3%/yr) Conservation Regions. Over a quarter of the year effects were significantly different from zero, and the estimated standard deviation in common-shared year effects between sites within each region was about 50% per year. This large common-shared interannual variation in counts may have been caused by regional movements of birds related to changes in marine conditions that affect the availability of prey. PMID:26258803

Modifications to the bottomless lift net for sampling nekton in tidal mangrove forests

USGS Publications Warehouse

McIvor, C.C.; Silverman, N.L.

2010-01-01

Sampling fishes in vegetated intertidal wetlands is logistically challenging. We modified the 2 ?? 3-m2 bottomless lift net developed for sampling nekton (fish and decapod crustaceans) on the surface of salt marshes for use in tidal mangrove forests with a woody (as opposed to herbaceous) underground root system. As originally designed (Rozas, Mar Ecol Prog Ser 89:287-292, 1992), the lift net was buried directly in the marsh substrate. The net was raised at slack high tide thereby encircling nekton within the enclosed area. A chain-line on the net bottom prevented escape under the net once deployed. However, when we used this same design in tidal mangrove forests, the extensive woody roots and occasional slumping sediments resulted in uneven trenches that could not be cleared effectively during sample recovery. We made 3 modifications to the original net design: (i) lined the peat trenches with aluminum channels of uniform width and depth; (ii) replaced the previous chain-line with Velcro closures that directly attached the net to the inner face of the outer wall of the aluminum channel; and (iii) removed the subtidal pan previously used for concentrating the enclosed nekton at low tide, and filled in those depressions with on-site peat. In the modified version, the aluminum trench became the only subtidal refuge available to nekton, and it was from here that we collected the sample after the forest drained. These modifications permitted high clearing efficiency (93-100%) of fin-clipped individuals of two common species of estuarine resident fishes, Kryptolebias marmoratus (mangrove rivulus) and Bathygobius soporator (frillfin goby). Additionally, the density estimates of grass shrimp (Palaemonetes spp.) increased 10-fold post-modification. ?? 2010 US Government.

Aggression and Related Behavioral Traits: The Impact of Winning and Losing and the Role of Hormones

PubMed Central

Chang, Ching; Li, Cheng-Yu; Earley, Ryan L.; Hsu, Yuying

2012-01-01

A suite of correlated behaviors reflecting between-individual consistency in behavior across multiple situations is termed a “behavioral syndrome.” Researchers have suggested that a cause for the correlation between different behaviors might lie in the neuroendocrine system. In this study, we examined the relationships between aggressiveness (a fish's readiness to perform gill display to its mirror image) and each of boldness (the readiness to emerge from a shelter), exploratory tendency (the readiness to approach a novel shelter), and learning performance (the probability of entering the correct reservoir in a T-maze test) in a mangrove rivulus, Kryptolebias marmoratus. We explored the possibility that the relationships between them arise because these behaviors are all modulated by cortisol and testosterone. We also tested the stability of the relationships between these behaviors shortly after using a winning or losing experience to alter individuals’ aggressiveness. The results were that aggressiveness correlated positively with boldness and the tendency to explore, and that these three behavioral traits were all positively correlated with pre-experience testosterone levels. Aggressiveness and boldness also positively correlated with pre-experience cortisol levels; exploratory tendency did not. The relationship between aggressiveness and boldness appeared to be stronger than that between either of them and exploratory tendency. These results suggest that testosterone and cortisol play important roles in mediating the correlations between these behavioral traits. Learning performance was not significantly correlated with the other behavioral traits or with levels of testosterone or cortisol. Recent experience in contests influenced individuals’ aggressiveness, tendency to explore, and learning performance but not their boldness; individuals that received a winning experience were quicker to display to their mirror image and performed better in the

The role of density-dependent individual growth in the persistence of freshwater salmonid populations.

PubMed

Vincenzi, Simone; Crivelli, Alain J; Jesensek, Dusan; De Leo, Giulio A

2008-06-01

Theoretical and empirical models of populations dynamics have paid little attention to the implications of density-dependent individual growth on the persistence and regulation of small freshwater salmonid populations. We have therefore designed a study aimed at testing our hypothesis that density-dependent individual growth is a process that enhances population recovery and reduces extinction risk in salmonid populations in a variable environment subject to disturbance events. This hypothesis was tested in two newly introduced marble trout (Salmo marmoratus) populations living in Slovenian streams (Zakojska and Gorska) subject to severe autumn floods. We developed a discrete-time stochastic individual-based model of population dynamics for each population with demographic parameters and compensatory responses tightly calibrated on data from individually tagged marble trout. The occurrence of severe flood events causing population collapses was explicitly accounted for in the model. We used the model in a population viability analysis setting to estimate the quasi-extinction risk and demographic indexes of the two marble trout populations when individual growth was density-dependent. We ran a set of simulations in which the effect of floods on population abundance was explicitly accounted for and another set of simulations in which flood events were not included in the model. These simulation results were compared with those of scenarios in which individual growth was modelled with density-independent Von Bertalanffy growth curves. Our results show how density-dependent individual growth may confer remarkable resilience to marble trout populations in case of major flood events. The resilience to flood events shown by the simulation results can be explained by the increase in size-dependent fecundity as a consequence of the drop in population size after a severe flood, which allows the population to quickly recover to the pre-event conditions. Our results suggest

Tracing biogeochemical subsidies from glacier runoff into Alaska's coastal marine food webs.

PubMed

Arimitsu, Mayumi L; Hobson, Keith A; Webber, D'Arcy N; Piatt, John F; Hood, Eran W; Fellman, Jason B

2018-01-01

Nearly half of the freshwater discharge into the Gulf of Alaska originates from landscapes draining glacier runoff, but the influence of the influx of riverine organic matter on the trophodynamics of coastal marine food webs is not well understood. We quantified the ecological impact of riverine organic matter subsidies to glacier-marine habitats by developing a multi-trophic level Bayesian three-isotope mixing model. We utilized large gradients in stable (δ 13 C, δ 15 N, δ 2 H) and radiogenic (Δ 14 C) isotopes that trace riverine and marine organic matter sources as they are passed from lower to higher trophic levels in glacial-marine habitats. We also compared isotope ratios between glacial-marine and more oceanic habitats. Based on isotopic measurements of potential baseline sources, ambient water and tissues of marine consumers, estimates of the riverine organic matter source contribution to upper trophic-level species including fish and seabirds ranged from 12% to 44%. Variability in resource use among similar taxa corresponded to variation in species distribution and life histories. For example, riverine organic matter assimilation by the glacier-nesting seabirds Kittlitz's murrelet (Brachyramphus brevirostris) was greater than that of the forest-nesting marbled murrelet (B. marmoratus). The particulate and dissolved organic carbon in glacial runoff and near surface coastal waters was aged (12100-1500 years BP 14 C-age) but dissolved inorganic carbon and biota in coastal waters were young (530 years BP 14 C-age to modern). Thus terrestrial-derived subsidies in marine food webs were primarily composed of young organic matter sources released from glacier ecosystems and their surrounding watersheds. Stable isotope compositions also revealed a divergence in food web structure between glacial-marine and oceanic sites. This work demonstrates linkages between terrestrial and marine ecosystems, and facilitates a greater understanding of how climate

Tracing biogeochemical subsidies from glacier runoff into Alaska's coastal marine food webs

USGS Publications Warehouse

Arimitsu, Mayumi L.; Hobson, Keith A.; Webber, D'Arcy N.; Piatt, John F.; Hood, Eran W.; Fellman, Jason B.

2018-01-01

Nearly half of the freshwater discharge into the Gulf of Alaska originates from landscapes draining glacier runoff, but the influence of the influx of riverine organic matter on the trophodynamics of coastal marine food webs is not well understood. We quantified the ecological impact of riverine organic matter subsidies to glacier-marine habitats by developing a multi-trophic level Bayesian three-isotope mixing model. We utilized large gradients in stable (δ13C, δ15N, δ2H) and radiogenic (Δ14C) isotopes that trace riverine and marine organic matter sources as they are passed from lower to higher trophic levels in glacial-marine habitats. We also compared isotope ratios between glacial-marine and more oceanic habitats. Based on isotopic measurements of potential baseline sources, ambient water and tissues of marine consumers, estimates of the riverine organic matter source contribution to upper trophic-level species including fish and seabirds ranged from 12% to 44%. Variability in resource use among similar taxa corresponded to variation in species distribution and life histories. For example, riverine organic matter assimilation by the glacier-nesting seabirds Kittlitz's murrelet (Brachyramphus brevirostris) was greater than that of the forest-nesting marbled murrelet (B. marmoratus). The particulate and dissolved organic carbon in glacial runoff and near surface coastal waters was aged (12100–1500 years BP 14C-age) but dissolved inorganic carbon and biota in coastal waters were young (530 years BP 14C-age to modern). Thus terrestrial-derived subsidies in marine food webs were primarily composed of young organic matter sources released from glacier ecosystems and their surrounding watersheds. Stable isotope compositions also revealed a divergence in food web structure between glacial-marine and oceanic sites. This work demonstrates linkages between terrestrial and marine ecosystems, and facilitates a greater understanding of how climate-driven changes

Genetic variation in brown trout Salmo trutta across the Danube, Rhine, and Elbe headwaters: a failure of the phylogeographic paradigm?

PubMed

Lerceteau-Köhler, Estelle; Schliewen, Ulrich; Kopun, Theodora; Weiss, Steven

2013-08-26

Brown trout Salmo trutta have been described in terms of five major mtDNA lineages, four of which correspond to major ocean basins, and one, according to some authors, to a distinct taxon, marbled trout Salmo marmoratus. The Atlantic and Danubian lineages of brown trout meet in a poorly documented contact zone in Central Europe. The natural versus human mediated origin of the Atlantic lineage in the upper Danube is a question of both theoretical and practical importance with respect to conservation management. We provide a comprehensive population genetic analysis of brown trout in the region with the aim of evaluating the geographic distribution and genetic integrity of these two lineages in and around their contact zone. Genetic screening of 114 populations of brown trout across the Danube/Rhine/Elbe catchments revealed a counter-intuitive phylogeographic structure with near fixation of the Atlantic lineage in the sampled portions of the Bavarian Danube. Along the Austrian Danube, phylogeographic informative markers revealed increasing percentages of Danube-specific alleles with downstream distance. Pure Danube lineage populations were restricted to peri-alpine isolates within previously glaciated regions. Both empirical data and simulated hybrid comparisons support that trout in non-glaciated regions north and northeast of the Alps have an admixed origin largely based on natural colonization. In contrast, the presence of Atlantic basin alleles south and southeast of the Alps stems from hatchery introductions and subsequent introgression. Despite extensive stocking of the Atlantic lineage, little evidence of first generation stocked fish or F1 hybrids were found implying that admixture has been established over time. A purely phylogeographic paradigm fails to describe the distribution of genetic lineages of Salmo in Central Europe. The distribution pattern of the Atlantic and Danube lineages is extremely difficult to explain without invoking very strong

Population status of Kittlitz's Murrelet Brachyramphus brevirostris along the southern coast of the Alaska Peninsula

USGS Publications Warehouse

van Pelt, Thomas I.; Piatt, John F.

2005-01-01

the south coast of the Alaska Peninsula. For comparison, we estimate the population size of the congeneric Marbled Murrelet (Brachyramphus marmoratus). We discuss broad-scale murrelet habitat relationships and species comparisons, and present recommendations for management and future work. Other species of marine birds and mammals were also surveyed; summarized information is included as an appendix.

Defining environmental flows requirements at regional scale by using meso-scale habitat models and catchments classification

NASA Astrophysics Data System (ADS)

Vezza, Paolo; Comoglio, Claudio; Rosso, Maurizio

2010-05-01

The alterations of the natural flow regime and in-stream channel modification due to abstraction from watercourses act on biota through an hydraulic template, which is mediated by channel morphology. Modeling channel hydro-morphology is needed in order to evaluate how much habitat is available for selected fauna under specific environmental conditions, and consequently to assist decision makers in planning options for regulated river management. Meso-scale habitat modeling methods (e.g., MesoHABSIM) offer advantages over the traditional physical habitat evaluation, involving a larger range of habitat variables, allowing longer length of surveyed rivers and enabling understanding of fish behavior at larger spatial scale. In this study we defined a bottom-up method for the ecological discharge evaluation at regional scale, focusing on catchments smaller than 50 km2, most of them located within mountainous areas of Apennines and Alps mountain range in Piedmont (NW Italy). Within the regional study domain we identified 30 representative catchments not affected by water abstractions in order to build up the habitat-flow relationship, to be used as reference when evaluating regulated watercourses or new projects. For each stream we chose a representative reach and obtained fish data by sampling every single functional habitat (i.e. meso-habitat) within the site, keeping separated each area by using nets. The target species were brown trout (Salmo trutta), marble trout (Salmo trutta marmoratus), bullhead (Cottus gobius), chub (Leuciscus cephalus), barbel (Barbus barbus), vairone (Leuciscus souffia) and other rheophilic Cyprinids. The fish habitat suitability criteria was obtained from the observation of habitat use by a selected organism described with a multivariate relationship between habitat characteristics and fish presence. Habitat type, mean slope, cover, biotic choriotop and substrate, stream depth and velocity, water pH, temperature and percentage of dissolved

Chemosynthetic trophic support for the benthic community at an intertidal cold seep site at Mocha Island off central Chile

NASA Astrophysics Data System (ADS)

Sellanes, Javier; Zapata-Hernández, Germán; Pantoja, Silvio; Jessen, Gerdhard L.

2011-12-01

We analyzed C and N stable isotope ratios of benthic fauna and their potential food sources at an intertidal methane seep site and a control site without emanation at Mocha Island (central Chile). The objective was to trace the origin of the main food sources used by the local heterotrophic fauna, based on the hypothesis that chemosynthetic production could be partially fueling the local food web at the seep site. Food sources sampled at both sites included macroalgae, particulate organic matter and bacteria-like filaments found growing over the red algae Gelidium lingulatum within the areas of active methane release. At the control site, located 11 km away from the gas emanation, fauna exhibited moderate δ 13C values ranging from -16.2‰ (in a nereid polychaete) to -14.8‰ (in a cirolanid isopod), which were consistent with those of the potential photosynthetic food sources sampled at this site (-20.2 to -16.5‰). δ 13C values of the photosynthetic food sources at the seep site similarly ranged between -25.4 and -17.9‰. However, a portion of the animals at this site were consistently more 13C-depleted, with δ 13C values close to that of the seeping methane (-43.8‰) and the bacteria-like filaments (-39.2 ± 2.5‰) also collected at this site. Specific examples were the Marphysa sp. polychaetes (δ 13C = -44.7 ± 0.6‰), the Schistomeringos sp. dorvilleid polychaetes (δ 13C = -42.9‰), and the tanaid crustacean Zeuxo marmoratus (δ 13C = -37.3 ± 0.2‰). The significantly higher δ 13C values of the herbivorous gastropod Tegula atra at the seep site (-29.3 ± 3.1‰) than at the control site (-12.6 ± 0.3‰) also indicated differences among sites of the preferred carbon sources of this species. Mixing model estimates indicate that at the seep site bacteria-like filaments could be contributing up to ˜60% of the assimilated diet of selected invertebrates. Furthermore, several indicators of trophic structure, based in isotopic niche metrics, indicate a

Kittlitz’s and Marbled Murrelets in Kenai Fjords National Park, south-central Alaska: At-sea distribution, abundance, and foraging habitat, 2006–08

USGS Publications Warehouse

Arimitsu, Mayumi L.; Piatt, John F.; Romano, Marc D.; Madison, E.N.; Conaway, Jeffrey S.

2010-01-01

Kittlitz’s murrelets (Brachyramphus brevirostris) and marbled murrelets (B. marmoratus) are small diving seabirds and are of management concern because of population declines in coastal Alaska. In 2006–08, we conducted a study in Kenai Fjords National Park, south-central Alaska, to estimate the recent population size of Brachyramphus murrelets, to evaluate productivity based on juvenile to adult ratios during the fledgling season, and to describe and compare their use of marine habitat. We also attempted a telemetry study to examine Kittlitz’s murrelet nesting habitat requirements and at-sea movements. We estimated that the Kittlitz’s murrelet population was 671 ± 144 birds, and the marbled murrelet population was 5,855 ± 1,163 birds. Kittlitz’s murrelets were limited to the heads of three fjords with tidewater glaciers, whereas marbled murrelets were more widely distributed. Population estimates for both species were lower in 2007 than in 2006 and 2008, possibly because of anomalous oceanographic conditions that may have delayed breeding phenology. During late season surveys, we observed few hatch-year marbled murrelets and only a single hatch-year Kittlitz’s murrelet over the course of the study. Using radio telemetry, we found a likely Kittlitz’s murrelet breeding site on a mountainside bordering one of the fjords. We never observed radio-tagged Kittlitz’s murrelets greater than 10 kilometer from their capture sites, suggesting that their foraging range during breeding is narrow. We observed differences in oceanography between fjords, reflecting differences in sill characteristics and orientation relative to oceanic influence. Acoustic biomass, a proxy for zooplankton and small schooling fish, generally decreased with distance from glaciers in Northwestern Lagoon, but was more variable in Aialik Bay where dense forage fish schools moved into glacial areas late in the summer. Pacific herring (Clupea pallasii), capelin (Mallotus villosus) and

Decadal changes in the ichthyofauna of a eutrophic estuary following a remedial engineering modification and subsequent environmental shifts

NASA Astrophysics Data System (ADS)

Potter, Ian C.; Veale, Lauren; Tweedley, James R.; Clarke, K. Robert

2016-11-01

. Following the opening of the artificial entrance channel, the relative abundances of these three macrophyte-associated species declined, whereas those of species, e.g. the marine estuarine-opportunist Torquigener pleurogramma and estuarine resident Favonigobius lateralis, which typically occur over unvegetated areas and in elevated salinities, increased. By 2008-10, such species had become more abundant, following declines in freshwater discharge and a longer persistence of high salinities, with macrophyte-associated species, e.g. the marine estuarine-opportunists P. octolineatus, Gymnapistes marmoratus and Haletta semifasciata and estuarine resident O. rueppellii, becoming more numerous as macroalgal and seagrass areas became better developed. This study demonstrates the great value of long-term data sets for detecting and predicting the effects of major structural changes and climate change on the faunas of estuaries.

Dietary variations within a family of ambush predators (Platycephalidae) occupying different habitats and environments in the same geographical region.

PubMed

Coulson, P G; Platell, M E; Clarke, K R; Potter, I C

2015-03-01

the three species that fed predominantly on teleosts underwent serial size-related changes. Although L. inops and the co-occurring P. laevigatus both consume large volumes of teleosts, the former ingests larger, less demersal and more mobile prey, e.g. the labrids Haletta semifasciata and Neoodax balteatus, than the latter, e.g. the scorpaenid Gymnapistes marmoratus, reflecting the possession by L. inops of a far longer head and larger buccal cavity. Circumstantial evidence suggests that the large differences in the volumes of crustaceans and teleosts consumed by each platycephalid species are related to differences in the relative availability of these prey in the different habitats or environments of each species. © 2015 The Fisheries Society of the British Isles.

Collision and displacement vulnerability among marine birds of the California Current System associated with offshore wind energy infrastructure

USGS Publications Warehouse

Adams, Josh; Kelsey, Emily C.; Felis, Jonathan J.; Pereksta, David M.

2016-10-27

) had the greatest overall PCV score. Some alcids (Scripps’s Murrelet [Synthliboramphus scrippsi], Marbled Murrelet [Brachyramphus marmoratus], and Tufted Puffin [Fratercula cirrhata]), terns (Elegant and Least Lern), and loons (Yellow-billed [Gavia adamsii] and Common Loon [G. immer]) had the greatest PDV scores. Ashy Storm-Petrel (Oceanodroma homochroa) had the greatest overall PDV score. To help inform decisions that will impact seabird conservation, vulnerability assessment results can now be combined with recent marine bird at-sea distribution and abundance data for the CCS to evaluate vulnerability areas where OWEI development is being considered. Lastly, it is important to note that as new information about seabird behavior and populations in the CCS becomes available, this database can be easily updated and modified.

Characteristics of the ichthyofauna of a temperate microtidal estuary with a reverse salinity gradient, including inter-decadal comparisons.

PubMed

Veale, L; Tweedley, J R; Clarke, K R; Hallett, C S; Potter, I C

2014-11-01

apex region, in which salinities reached 54 and temperatures 36° C, recorded the highest maximum density and, in terms of abundance, was dominated (90%) by three atherinid species, emphasizing the ability of this family to tolerate extreme conditions. Comparisons between the data for 2008-2010 and 1994 demonstrate that the spotted hardyhead Craterocephalus mugiloides and the common hardyhead Atherinomorus vaigiensis had colonized and become abundant in the Leschenault Estuary in the intervening period. This represents a southwards extension of the distribution of these essentially tropical species during a period of increasing coastal water temperatures as a result of climate change. The abundance of weed-associated species, e.g. the western gobbleguts Ostorhinchus rueppellii and the soldier Gymnapistes marmoratus, increased, whereas that of the longfinned goby Favonigobius lateralis decreased, probably reflecting increases in eutrophication and siltation, respectively. © 2014 The Fisheries Society of the British Isles.

Climate and environment of the earliest West European hominins inferred from amphibian and squamate reptile assemblages: Sima del Elefante Lower Red Unit, Atapuerca, Spain

NASA Astrophysics Data System (ADS)

Blain, Hugues-Alexandre; Bailon, Salvador; Cuenca-Bescós, Gloria; Bennàsar, Maria; Rofes, Juan; López-García, Juan Manuel; Huguet, Rosa; Arsuaga, Juan Luis; Bermúdez de Castro, José Maria; Carbonell, Eudald

2010-11-01

The Sima del Elefante cave, in the Sierra de Atapuerca (Burgos, Spain), is famous for the fact that level TE9 of its Lower Red Unit recently delivered the oldest hominin remains of Western Europe, identified as Homo antecessor and dated by biostratigraphy and radiometric methods to ca 1.2 Ma. Given the importance of this discovery, every effort is being made to reconstruct the landscapes where these hominins once thrived. The amphibian and squamate reptile assemblage of the Sima del Elefante Lower Red Unit is here studied for the first time. The faunal list comprises at least 17 species (roughly 12,000 bone fossil remains): Salamandra salamandra, Triturus cf. marmoratus, Alytes obstetricans, Pelobates cultripes, Pelodytes punctatus, Bufo bufo, Bufo calamita, Hyla arborea, Rana sp., cf. Pelophylax sp., Lacerta s.l., small-sized indeterminate lacertids, Anguis fragilis, Natrix cf. natrix, Natrix cf. maura, Coronella cf. girondica and Vipera sp. As the amphibians and squamate reptiles do not differ at species level from the extant herpetofauna of the Iberian Peninsula, they can contribute to the reconstruction of the landscape and climate. In this paper, the mutual climatic range and habitat weighting methods are applied to the amphibian and squamate reptile assemblages in order to estimate quantitative data. The results from the squamate and amphibian study indicate that during the hominin presence the mean annual temperature (MAT = 10-13 °C) was always slightly warmer than at present and the mean annual precipitation (MAP = 800-1000 mm) was greater than today in the Burgos area. The landscape had open habitats in the vicinity of the Atapuerca caves throughout the sequence, with wet points in the surrounding area, and a predominance of humid meadows and open woodlands. These results mainly agree with those for large mammals, small mammals and the pollen analysis. The climate and landscape of TE-LRU are very similar to those reconstructed for the TD6 "Aurora Stratum

[Trophic structure of river fish from Corral de San Luis, Magdalena river basin, Colombia Caribbean].

PubMed

Morales, Jenny; García-Alzate, Carlos A

2016-06-01

Ecological studies of species, such as the stomach content analysis, allow us to recognize different trophic groups, the importance of trophic levels and the interrelationships among species and other members of the community. In this investigation, we studied food habits, feeding variation and trophic relationships of the fishes present in streams of the Corral de San Luis drainage, Tubará, Atlántico Department, a part of the lower Magdalena River Basin in Colombian Caribbean. Fish samples of Awaous banana, Agonostomus monticola, Andinoacara latifrons, Hyphessobrycon proteus, Poecilia gillii, Gobiomorus dormitor and Synbranchus marmoratus were obtained using a seine (2x5 m, mesh 0.5 cm), from November 2012 to October 2013. To analyze their stomach contents, we used numeric (% N), volumetric (% V) and frequency of occurrence (% FO) methods, an emptiness coefficient (C.V), index of food item importance (I.A). Besides, physical and chemical habitat parameters were recorded on site. Information obtained was processed using multivariate statistical analysis, ecological indices, and null models: canonical correspondence analysis (CCA), principal component analysis (PCA), trophic niche amplitude (Shannon-Weaver H´) and trophic overlap (Morisita-Horn). We observed significant differences on food resources consumption (K-W= 20.86; p<0.05) among the studied species. They were classified according to their food habits as omnivores with a tendency towards insectivory (A. monticola H´0.60; A. latifrons H´0.43), herbivores with a tendency towards the consumption of algae (A. banana H´0.50; P. gillii H´0.54) and carnivores with a tendency towards insectivory (H. proteus H´0.23); benthic invertebrates and microalgae were found the most important food sources. A total of 65 food items were identified in this study: 21 for A. banana (2 unique, 19 shared), 40 for A. monticola (21 unique, 19 shared), 19 for A. latifrons (5 unique, 14 shared), 6 for H. proteus (1 unique, 5