U.S. EPA, Pesticide Product Label, NIAGARA PYRENONE CROP SPRAY INSECTICIDE, 06/06/1973

EPA Pesticide Factsheets

2011-04-13

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A high-performance model for shallow-water simulations in distributed and heterogeneous architectures

NASA Astrophysics Data System (ADS)

Conde, Daniel; Canelas, Ricardo B.; Ferreira, Rui M. L.

2017-04-01

One of the most common challenges in hydrodynamic modelling is the trade off one must make between highly resolved simulations and the time required for their computation. In the particular case of urban floods, modelers are often forced to simplify the complex geometries of the problem, or to implicitly include some of its hydrodynamic effects, due to the typically very large spatial scales involved and limited computational resources. At CEris - Instituto Superior Técnico, Universidade de Lisboa - the STAV-2D shallow-water model, particularly suited for strong transient flows in complex and dynamic geometries, has been under development for the past recent years (Canelas et al., 2013 & Conde et al., 2013). The model is based on an explicit, first-order 2DH finite-volume discretization scheme for unstructured triangular meshes, in which a flux-splitting technique is paired with a reviewed Roe-Riemann solver, yielding a model applicable to discontinuous flows over time-evolving geometries. STAV-2D features solid transport in both Euleran and Lagrangian forms, with the first aiming at describing the transport of fine natural sediments and the latter aimed at large individual debris. The model has been validated with theoretical solutions and laboratory experiments (Canelas et al., 2013 & Conde et al., 2015). This work presents our most recent effort in STAV-2D: the re-design of the code in a modern Object-Oriented parallel framework for heterogeneous computations in CPUs and GPUs. The programming language of choice for this re-design was C++, due to its wide support of established and emerging parallel programming interfaces. The current implementation of STAV-2D provides two different levels of parallel granularity: inter-node and intra-node. Inter-node parallelism is achieved by distributing a simulation across a set of worker nodes, with communication between nodes being explicitly managed through MPI. At this level, the main difficulty is associated with the

Using high-performance mathematical modelling tools to predict erosion and sediment fluxes in peri-urban catchments

NASA Astrophysics Data System (ADS)

Pereira, André; Conde, Daniel; Ferreira, Carla S. S.; Walsh, Rory; Ferreira, Rui M. L.

2017-04-01

Deforestation and urbanization generally lead to increased soil erosion andthrough the indirect effect of increased overland flow and peak flood discharges. Mathematical modelling tools can be helpful for predicting the spatial distribution of erosion and the morphological changes on the channel network. This is especially useful to predict the impacts of land-use changes in parts of the watershed, namely due to urbanization. However, given the size of the computational domain (normally the watershed itself), the need for high spatial resolution data to model accurately sediment transport processes and possible need to model transcritical flows, the computational cost is high and requires high-performance computing techniques. The aim of this work is to present the latest developments of the hydrodynamic and morphological model STAV2D and its applicability to predict runoff and erosion at watershed scale. STAV2D was developed at CEris - Instituto Superior Técnico, Universidade de Lisboa - as a tool particularly appropriated to model strong transient flows in complex and dynamic geometries. It is based on an explicit, first-order 2DH finite-volume discretization scheme for unstructured triangular meshes, in which a flux-splitting technique is paired with a reviewed Roe-Riemann solver, yielding a model applicable to discontinuous flows over time-evolving geometries. STAV2D features solid transport in both Euleran and Lagrangian forms, with the aim of describing the transport of fine natural sediments and then the large individual debris. The model has been validated with theoretical solutions and laboratory experiments (Canelas et al., 2013 & Conde et al., 2015). STAV-2D now supports fully distributed and heterogeneous simulations where multiple different hardware devices can be used to accelerate computation time within a unified Object-Oriented approach: the source code for CPU and GPU has the same compilation units and requires no device specific branches, like

Modelling the transport of solid contaminants originated from a point source

NASA Astrophysics Data System (ADS)

Salgueiro, Dora V.; Conde, Daniel A. S.; Franca, Mário J.; Schleiss, Anton J.; Ferreira, Rui M. L.

2017-04-01

The solid phases of natural flows can comprise an important repository for contaminants in aquatic ecosystems and can propagate as turbidity currents generating a stratified environment. Contaminants can be desorbed under specific environmental conditions becoming re-suspended, with a potential impact on the aquatic biota. Forecasting the distribution of the contaminated turbidity current is thus crucial for a complete assessment of environmental exposure. In this work we validate the ability of the model STAV-2D, developed at CERIS (IST), to simulate stratified flows such as those resulting from turbidity currents in complex geometrical environments. The validation involves not only flow phenomena inherent to flows generated by density imbalance but also convective effects brought about by the complex geometry of the water basin where the current propagates. This latter aspect is of paramount importance since, in real applications, currents may propagate in semi-confined geometries in plan view, generating important convective accelerations. Velocity fields and mass distributions obtained from experiments carried out at CERIS - (IST) are used as validation data for the model. The experimental set-up comprises a point source in a rectangular basin with a wall placed perpendicularly to the outer walls. Thus generates a complex 2D flow with an advancing wave front and shocks due to the flow reflection from the walls. STAV-2D is based on the depth- and time-averaged mass and momentum equations for mixtures of water and sediment, understood as continua. It is closed in terms of flow resistance and capacity bedload discharge by a set of classic closure models and a specific high concentration formulation. The two-layer model is derived from layer-averaged Navier-Stokes equations, resulting in a system of layer-specific non-linear shallow-water equations, solved through explicit first or second-order schemes. According to the experimental data for mass distribution, the

Mathematical modelling of tsunami impacts on critical infrastructures: exposure and severity associated with debris transport at Sines port, Portugal.

NASA Astrophysics Data System (ADS)

Conde, Daniel; Baptista, Maria Ana; Sousa Oliveira, Carlos; Ferreira, Rui M. L.

2015-04-01

Global energy production is still significantly dependant on the coal supply chain, justifying huge investments on building infrastructures, capable of stocking very large quantities of this natural resource. Most of these infrastructures are located at deep-sea ports and are therefore exposed to extreme coastal hazards, such as tsunami impacts. The 2011 Tohoku tsunami is reported to have inflicted severe damage to Japan's coal-fired power stations and related infrastructure. Sines, located in the Portuguese coast, hosts a major commercial port featuring an exposed coal stockpile area extending over more than 24 ha and a container terminal currently under expansion up to 100ha. It is protected against storm surges but tsunamis have not been considered in the design criteria. The dominant wind-generated wave direction is N to NW, while the main tsunamigenic faults are located S to SW of the port. This configuration potentially exposes sensitive facilities, such as the new terminal container and the coal stockpile area. According to a recent revision of the national tsunami catalogue (Baptista, 2009), Portugal has been affected by numerous major tsunamis over the last two millennia, with the most notorious event being the Great Lisbon Earthquake and Tsunami occurred on the 1st November 1755. The aim of this work is to simulate the open ocean propagation and overland impact of a tsunami on the Sines port, similar to the historical event of 1755, based on the different tsunamigenic faults and magnitudes proposed in the current literature. Open ocean propagation was modelled with standard simulation tools like TUNAMI and GeoClaw. Near-shore and overland propagation was carried out using a recent 2DH mathematical model for solid-fluid flows, STAV-2D from CERIS-IST (Ferreira et al., 2009; Canelas, 2013). STAV-2D is particularly suited for tsunami propagation over complex and morphodynamic geometries, featuring a discretization scheme based on a finite-volume method using

Mathematical modelling of the transport of a poorly sorted granular mixture as a debris-flow. The case of Madeira Island torrential floods in 2010

NASA Astrophysics Data System (ADS)

Ferreira, Rui M. L.; Oliveira, Rodrigo P.; Conde, Daniel

2016-04-01

On the 20th February 2010, heavy rainfall was registered at Madeira Island, North Atlantic. Stony debris flows, mudflows and mudslides ensued causing severe property loss, 1.5 m thick sediment deposits at downtown Funchal including 16th century monuments, and a death toll of 47 lives. Debris-flow fronts propagated downstream while carrying very high concentrations of solid material. These two-phase solid-fluid flows were responsible for most of the infrastructural damage across the island, due to their significantly increased mass and momentum. The objective of the present modelling work is to validate a 2DH model for torrential flows featuring the transport and interaction of several size fractions of a poorly-sorted granular mixture typical of stony debris flow in Madeira. The module for the transport of poorly-sorted material was included in STAV-2D (CERIS-IST), a shallow-water and morphology solver based on a finite-volume method using a flux-splitting technique featuring a reviewed Roe-Riemann solver, with appropriate source-term formulations to ensure full conservativeness. STAV-2D also includes formulations of flow resistance and bedload transport adequate for debris-flows with natural mobile beds (Ferreira et al., 2009) and has been validated with both theoretical solutions and laboratory data (Soares-Frazão et al., 2012; Canelas et al., 2013). The modelling of the existing natural and built environment is fully explicit. All buildings, streets and channels are accurately represented within the mesh geometry. Such detail is relevant for the reliability of the validation using field data, since the major sedimentary deposits within the urban meshwork of Funchal were identified and characterized in terms of volume and grain size distribution during the aftermath of the 20th February of 2010 event. Indeed, the measure of the quality of the numerical results is the agreement between simulated and estimated volume of deposited sediment and between estimated and

Severity and exposure associated to tsunami actions in urban waterfronts. The case of Lisbon, Portugal.

NASA Astrophysics Data System (ADS)

Conde, Daniel; Telhado, Maria J.; Viana Baptista, Maria A.; Antunes, Carlos M.; Ferreira, Rui M. L.

2014-05-01

The Tagus estuary is recognized as an exposed location to tsunami occurrences, given its proximity to tsunamigenic faults such as the Marquês de Pombal and the Horseshoe fault system. Lisbon, bordered by the Tagus estuary, is a critical point of Portugal's tsunami hazard map, having been affected by several tsunamis (Baptista and Miranda, 2009) including the notorious event of November 1st 1755, the last major natural disaster known to have inflicted massive destruction in Portugal. The main objective of this work, a joint initiative of CEHIDRO (IST - Universidade de Lisboa) and the Municipal Civil Protection Services of Lisbon, is to contribute to the quantification of severity and exposure of Lisbon waterfront to tsunami events. For that purpose, the propagation of a tsunami similar to that of the 1st November of 1755 in the Tagus estuary was numerically simulated. Several scenarios were considered, articulating the influence of tidal (low and high tides), atmospheric (increase in water level due to storm surges) and hydrological (flow discharge in Tagus river) conditions. Different initial and boundary conditions were defined for each modelling scenario but the magnitude of the tsunami remained what is believed to be an exceptional event. The extent of the inundation and relevant hydrodynamic quantities were registered for all scenarios. The employed simulation tool - STAV-2D - was developed at CEHIDRO (IST) and is based on a 2DH spatial (Eulerian) shallow-flow approach suited to complex and dynamic bottom boundaries. The discretization technique relies on a finite-volume scheme, based on a flux-splitting technique incorporating a reviewed version of the Roe Riemann solver (Canelas et al. 2013, Conde et al. 2013). STAV-2D features conservation equations for the finer solid phase of the flow and also a Lagrangian model for the advection of larger debris elements. The urban meshwork was thoroughly discretized with a mesh finer than average street width. This fine

Sediment pollution of the Elbe River side structures - current research

NASA Astrophysics Data System (ADS)

Chalupova, Dagmar; Janský, Bohumír

2016-04-01

The contribution brings the summarized results of a long-term research on sediment pollution of side structures of the Elbe River over the last 14 years. The investigation has been focused on old anthropogenic pollution of sediment cores taken from fluvial lakes and floodplain, as the sampling of deeper sediments outside the riverbed is not a part of systematic monitoring of sediment pollution of the Elbe. The Elbe River floodplain has been influenced by human activities since the Middle Ages, but the main anthropogenic pollution have been produced in the 20th century. The studied localities were chosen with the respect to the distance from the source of industrial pollution, the intensity of hydrological communication with the river and the surrounding landuse to determine the extend and the level of anthropogenic contamination in the Elbe River floodplain ecosystem. Apart from bathymetric measurements, observation of the hydrological regime in several fluvial lakes or water quality sampling at some localities, the research was focused above all on determination of metal concentrations (Ag, Cd, Cr, Cu, Fe, Hg, Mn, Pb, Zn) in all taken sediment cores, specific organic compounds (PCBs, DDT, HCH, HCB, PAHs etc.), total organic carbon at some localities and grain structure analyses. The data were also compared with the results of systematic sediment monitoring from the nearest riverbed sampling stations on the Elbe River. The highest concentrations of metals and specific organic compounds were determined in the sediments taken from fluvial lakes and floodplain (Zimní přístav PARAMO, Rosice fuvial Lake, Libiš pool etc.) situated in the vicinity of the main Elbe River polluters - Synthesia chemical plant and PARAMO refinery in Pardubice or Spolana chemical plant near Neratovice. However, there was also determined a significant role of the hydrological communication with the river proved with lower sediment pollution in separated localities. The realization of the

NMR Analysis of Amide Hydrogen Exchange Rates in a Pentapeptide-Repeat Protein from A. thaliana.

PubMed

Xu, Shenyuan; Ni, Shuisong; Kennedy, Michael A

2017-05-23

At2g44920 from Arabidopsis thaliana is a pentapeptide-repeat protein (PRP) composed of 25 repeats capped by N- and C-terminal α-helices. PRP structures are dominated by four-sided right-handed β-helices typically consisting of mixtures of type II and type IV β-turns. PRPs adopt repeated five-residue (Rfr) folds with an Rfr consensus sequence (STAV)(D/N)(L/F)(S/T/R)(X). Unlike other PRPs, At2g44920 consists exclusively of type II β-turns. At2g44920 is predicted to be located in the thylakoid lumen although its biochemical function remains unknown. Given its unusual structure, we investigated the biophysical properties of At2g44920 as a representative of the β-helix family to determine if it had exceptional global stability, backbone dynamics, or amide hydrogen exchange rates. Circular dichroism measurements yielded a melting point of 62.8°C, indicating unexceptional global thermal stability. Nuclear spin relaxation measurements indicated that the Rfr-fold core was rigid with order parameters ranging from 0.7 to 0.9. At2g44920 exhibited a striking range of amide hydrogen exchange rates spanning 10 orders of magnitude, with lifetimes ranging from minutes to several months. A weak correlation was found among hydrogen exchange rates, hydrogen bonding energies, and amino acid solvent-accessible areas. Analysis of contributions from fast (approximately picosecond to nanosecond) backbone dynamics to amide hydrogen exchange rates revealed that the average order parameter of amides undergoing fast exchange was significantly smaller compared to those undergoing slow exchange. Importantly, the activation energies for amide hydrogen exchange were found to be generally higher for the slowest exchanging amides in the central Rfr coil and decreased toward the terminal coils. This could be explained by assuming that the concerted motions of two preceding or following coils required for hydrogen bond disruption and amide hydrogen exchange have a higher activation energy

User Needs in the Development of a Health App Ecosystem for Self-Management of Cystic Fibrosis: User-Centered Development Approach.

PubMed

Floch, Jacqueline; Zettl, Annabel; Fricke, Lena; Weisser, Tina; Grut, Lisbet; Vilarinho, Thomas; Stav, Erlend; Ascolese, Antonio; Schauber, Cornelia

2018-05-08

relevant features for a self-management app ecosystem. Education, enzyme dosage calculation, nutrition management, treatment organization, health diary, treatment follow-up, practical guidelines for treatment, communication with doctors, and communication with peers are foreseen as useful features. The results indicate the readiness for self-management in the CF care even in countries that provide well-functioning health care services for CF care. The large diversity of user requirements identified reflects the crucial role user integration plays in developing apps for a chronic condition such as CF. The need for personalization stemming from the individuality of the patients and the need for communication with health care professionals support the idea of an app ecosystem for the self-management of CF. ©Jacqueline Floch, Annabel Zettl, Lena Fricke, Tina Weisser, Lisbet Grut, Thomas Vilarinho, Erlend Stav, Antonio Ascolese, Cornelia Schauber. Originally published in JMIR Mhealth and Uhealth (http://mhealth.jmir.org), 08.05.2018.

Coupled Eulerian-Lagrangian transport of large debris by tsunamis

NASA Astrophysics Data System (ADS)

Conde, Daniel A. S.; Ferreira, Rui M. L.; Sousa Oliveira, Carlos

2016-04-01

Tsunamis are notorious for the large disruption they can cause on coastal environments, not only due to the imparted momentum of the incoming wave but also due to its capacity to transport large quantities of solid debris, either from natural or human-made sources, over great distances. A 2DH numerical model under development at CERIS-IST (Ferreira et al., 2009; Conde, 2013) - STAV2D - capable of simulating solid transport in both Eulerian and Lagrangian paradigms will be used to assess the relevance of Lagrangian-Eulerian coupling when modelling the transport of solid debris by tsunamis. The model has been previously validated and applied to tsunami scenarios (Conde, 2013), being well-suited for overland tsunami propagation and capable of handling morphodynamic changes in estuaries and seashores. The discretization scheme is an explicit Finite Volume technique employing flux-vector splitting and a reviewed Roe-Riemann solver. Source term formulations are employed in a semi-implicit way, including the two-way coupling of the Lagrangian and Eulerian solvers by means of conservative mass and momentum transfers between fluid and solid phases. The model was applied to Sines Port, a major commercial port in Portugal, where two tsunamigenic scenarios are considered: an 8.5 Mw scenario, consistent with the Great Lisbon Earthquake and Tsunami of the 1st November 1755 (Baptista, 2009), and an hypothetical 9.5 Mw worst-case scenario based on the same historical event. Open-ocean propagation of these scenarios were simulated with GeoClaw model from ClawPack (Leveque, 2011). Following previous efforts on the modelling of debris transport by tsunamis in seaports (Conde, 2015), this work discusses the sensitivity of the obtained results with respect to the phenomenological detail of the employed Eulerian-Lagrangian formulation and the resolution of the mesh used in the Eulerian solver. The results have shown that the fluid to debris mass ratio is the key parameter regarding the