Size-dependent depletion and community disturbance of phytoplankton under intensive oyster mariculture based on HPLC pigment analysis in Daya Bay, South China Sea.

PubMed

Jiang, Tao; Chen, Feiyu; Yu, Zonghe; Lu, Lin; Wang, Zhaohui

2016-12-01

In this study, we conducted a 14-month investigation in Daya Bay, southern China to understand the effects of oyster farming on phytoplankton community and biomass by using size-fractionated phytopigments. Results proved the filtering effects of oysters on phytoplankton biomass. During the oyster culture period, the average concentration of total chlorophyll a (sum of size-fractionated Chl a) within the farming area was approximately 60% lower than that at the reference site. Phytoplankton depletion in the aquaculture zone mainly occurred in micro-sized fractions (>20 μm) of Chl a, fucoxanthin, and peridinin. The influence of oyster filtration on nano-sized (2.7-20 μm) pigments seemed less than that on micro-sized ones. The depletion of peridinin and 19'-hex-fucoxanthin in aquaculture zone was higher than those of the other pigments, which indicated that flagellated cells might be selectively filtered by oysters and could be more easily influenced by oyster aquaculture. The pico-sized Chl a (<2.7 μm) comprised 24% of total Chl a on the average in the aquaculture zone during the cultural period compared to 6% in the reference site. Picoeukaryote abundance, which was determined via flow cytometry, was significantly higher in the aquaculture zone than in the non-aquaculture areas. The abundance of picoeukaryote is significantly and positively correlated with the concentrations of pico-sized prasinoxanthin, violaxanthin, and neoxanthin, indicating that picoeukaryote is dominated by those in prasinophyte. The results suggest that oyster aquaculture might stimulate the growth of prasinophyte, although the seasonal variations are mainly controlled by the water temperature in the study area. This research highlights the successful use of size-fractionated phytopigments to estimate size-specific phytoplankton biomass and community, which can be applied as a routine method to monitor the environmental effect and food resources of bivalve aquaculture. Copyright © 2016 Elsevier Ltd. All rights reserved.

Concentrations of Heavy Metals in Commercially Important Oysters from Goa, Central-West Coast of India.

PubMed

Shenai-Tirodkar, Prachi S; Gauns, Mangesh U; Ansari, Zakir A

2016-12-01

The major beds of oyster along the central-west coast of India are exposed to different anthropogenic activities and are severely exploited for human consumption. In this viewpoint, tissues of oyster Crassostrea madrasensis, C. gryphoides and Saccostrea cucullata were analyzed for Cu, Ni, Cd and Pb concentrations (dry weight) from Chicalim Bay, Nerul Creek and Chapora Bay in pre-monsoon, monsoon and post-monsoon seasons. A higher concentration of Cu (134.4-2167.9 mg kg -1 ) and Cd (7.1-88.5 mg kg -1 ) was found, which is greater than the recommended limits in all the three species (and sites). Moreover, significant (p < 0.05) variations were observed for all the metals concentrations among the species, seasons and sites. The high concentrations of Cd and Cu in tissues of edible oyster pose a threat to human health. Therefore, continuous monitoring, people awareness and a stringent government policy should be implemented to mitigate the metal pollution along the studied sites.

DOE Office of Scientific and Technical Information (OSTI.GOV)

Wendt, P.H.; Van Dolah, R.F.; Bobo, M.Y.

Recent evidence indicates that the wood preservative commonly used in dock pilings (chromated copper arsenate or CCA) is highly toxic to several estuarine organisms in laboratory experiments. Increasing demand for residential docks prompted a field study intended to complement these earlier laboratory investigations. Objectives of the study were to: (1) examine concentrations of Cu, Cr, and As in sediments and oysters from intertidal locations in several creeks with and without high densities of docks; (2) examine the bioaccumulation of wood preservative leachates by laboratory-reared oysters transferred to field sites near and distant from newly constructed docks; and (3) investigate themore » acute toxicity of wood preservative leachates for several species of estuarine fishes and invertebrates exposed to these compounds in the field. Preliminary results indicate that sediment concentrations of all three metals were well below ER-L levels reported by Long and Morgan at all but one dock site. In an ancillary study, 24h LC{sub 50} bioassays were performed using rotifers (Brachionus plicatilis) which were exposed to pore water from sediments in creeks with and without docks. Toxicities of bulk sediments from the same sites were examined using Microtox which measures decreases in bioluminescence of marine bacteria (Photobacterium phosphoreum) as a function of sediment concentration. Neither the rotifer nor the Microtox bioassays showed any significant differences in toxicity between creeks with and without docks.« less

Maintaining Interest in Operator Requal Training.

ERIC Educational Resources Information Center

Lapp, H. J., Jr.

A study reviewed operator training programs at Oyster Creek Nuclear Generating Station to determine their interface with plant operations and to devise new ways of maintaining interest in requalification (requal) training. The operator training review committee that was formed to implement the review documented over 100 issues and concerns…

33 CFR 334.480 - Archers Creek, Ribbon Creek, and Broad River; U.S. Marine Corps Recruit Depot, Parris Island...

Code of Federal Regulations, 2013 CFR

2013-07-01

... Broad River; U.S. Marine Corps Recruit Depot, Parris Island, South Carolina; danger zones. 334.480... DEFENSE DANGER ZONE AND RESTRICTED AREA REGULATIONS § 334.480 Archers Creek, Ribbon Creek, and Broad River... danger zone on Archers Creek (between the Broad River and Beaufort River), Ribbon Creek, and the Broad...

33 CFR 334.480 - Archers Creek, Ribbon Creek, and Broad River; U.S. Marine Corps Recruit Depot, Parris Island...

Code of Federal Regulations, 2012 CFR

2012-07-01

... Broad River; U.S. Marine Corps Recruit Depot, Parris Island, South Carolina; danger zones. 334.480... DEFENSE DANGER ZONE AND RESTRICTED AREA REGULATIONS § 334.480 Archers Creek, Ribbon Creek, and Broad River... danger zone on Archers Creek (between the Broad River and Beaufort River), Ribbon Creek, and the Broad...

33 CFR 334.480 - Archers Creek, Ribbon Creek, and Broad River; U.S. Marine Corps Recruit Depot, Parris Island...

Code of Federal Regulations, 2014 CFR

2014-07-01

... Broad River; U.S. Marine Corps Recruit Depot, Parris Island, South Carolina; danger zones. 334.480... DEFENSE DANGER ZONE AND RESTRICTED AREA REGULATIONS § 334.480 Archers Creek, Ribbon Creek, and Broad River... danger zone on Archers Creek (between the Broad River and Beaufort River), Ribbon Creek, and the Broad...

Post-Miocene Right Separation on the San Gabriel and Vasquez Creek Faults, with Supporting Chronostratigraphy, Western San Gabriel Mountains, California

USGS Publications Warehouse

Beyer, Larry A.; McCulloh, Thane H.; Denison, Rodger E.; Morin, Ronald W.; Enrico, Roy J.; Barron, John A.; Fleck, Robert J.

2009-01-01

The right lateral San Gabriel Fault Zone in southern California extends from the northwestern corner of the Ridge Basin southeastward to the eastern end of the San Gabriel Mountains. It bifurcates to the southeast in the northwestern San Gabriel Mountains. The northern and older branch curves eastward in the range interior. The southern younger branch, the Vasquez Creek Fault, curves southeastward to merge with the Sierra Madre Fault Zone, which separates the San Gabriel Mountains from the northern Los Angeles Basin margin. An isolated exposure of partly macrofossiliferous nearshore shallow-marine sandstone, designated the Gold Canyon beds, is part of the southwest wall of the fault zone 5.5 km northwest of the bifurcation. These beds contain multiple subordinate breccia-conglomerate lenses and are overlain unconformably by folded Pliocene-Pleistocene Saugus Formation fanglomerate. The San Gabriel Fault Zone cuts both units. Marine macrofossils from the Gold Canyon beds give an age of 5.2+-0.3 Ma by 87Sr/86Sr analyses. Magnetic polarity stratigraphy dates deposition of the overlying Saugus Formation to between 2.6 Ma and 0.78 Ma. Distinctive metaplutonic rocks of the Mount Lowe intrusive suite in the San Gabriel Range are the source of certain clasts in both the Gold Canyon beds and Saugus Formation. Angular clasts of nondurable Paleocene sandstone also occur in the Gold Canyon beds. The large size and angularity of some of the largest of both clast types in breccia-conglomerate lenses of the beds suggest landslides or debris flows from steep terrain. Sources of Mount Lowe clasts, originally to the north or northeast, are now displaced southeastward by faulting and are located between the San Gabriel and Vasquez Creek faults, indicating as much as 12+-2 km of post-Miocene Vasquez Creek Fault right separation, in accord with some prior estimates. Post-Miocene right slip thus transferred onto the Vasquez Creek Fault southeast of the bifurcation. The right separation on the Vasquez Creek Fault adds to the generally accepted 22-23 km of middle-late Miocene right separation established for the San Gabriel Fault east of the bifurcation, resulting in total right separation of 34-35 km northwest of the bifurcation. Clast sizes and lithologies in Saugus Formation deformed alluvial fan deposits in the Gold and Little Tujunga Canyons area indicate that alluvial stream flow was from the north or north-northeast. The alluvial fan complex is beheaded at the San Gabriel Fault Zone, and no correlative deposits have been found north of the fault zone. Likely sources of several distinctive clast types are east of the bifurcation and north of the Vasquez Creek Fault. Combining these data with right slip caused by the 34 deg +-6 deg of clockwise local block rotation suggests that post-Saugus Formation (<2.6 to 0.78 Ma) right separation along the fault zone is 4+-2 km. The fossils, lithology, and age of the Gold Canyon beds correlate with the basal Pico Formation. The beds presumably connected southward or southwestward to a more open marine setting. A search for correlative strata to the south and southwest found that some strata previously mapped as Towsley Formation correlate with the Modelo Formation. Oyster spat in some Modelo Formation beds are the first recorded fossil occurrences and are especially remarkable because of associations with Miocene bathyal benthic foraminifers, planktonic calcareous nannofossils, and diatoms. Topanga Group basalt resting on basement rocks between Little and Big Tujunga Canyons gives an age of 16.14+-0.05 Ma from 40Ar/39Ar analysis. Improved understanding of the upper Miocene stratigraphy indicates large early movement on the eastern Santa Susana Fault at about 7-6 Ma.

Evaluation of a watershed model for estimating daily flow using limited flow measurements

USDA-ARS?s Scientific Manuscript database

The Soil and Water Assessment Tool (SWAT) model was evaluated for estimation of continuous daily flow based on limited flow measurements in the Upper Oyster Creek (UOC) watershed. SWAT was calibrated against limited measured flow data and then validated. The Nash-Sutcliffe model Efficiency (NSE) and...

The ecology of intertidal oyster reefs of the South Atlantic Coast: A community profile

USGS Publications Warehouse

Bahr, Leonard M.; Lanier, William P.

1981-01-01

The functional role of the intertidal oyster reef community in the southeastern Atlantic coastal zone is described. This description is based on a compilation of published data, as well as some unpublished information presented as hypotheses. The profile is organized in a hierarchical manner, such that relevant details of reef oyster biology (autecology) are presented, followed by a description of the reef community level of organization. Then the reef community is described as a subsystem of the coastal marsh-ecosystem (synecoloqy). This information is also synthesized in a series of nested conceptual models of oyster reefs at the regional level, the drainage basin level, and the individual reef level. The final chapter includes a summary overview and a section on management implications and guidelines. Intertidal oyster reefs are relatively persistent features of the salt marsh estuarine ecosystem in the southeastern Atlantic coastal zone. The average areal extent of the oyster reef subsystem in this larger ecosystem is relatively small (about 0.05%). This proportion does not reflect, however, the functional importance of the reef subsystem in stablizing the marsh, providing food for estuarine consumers, mineralizing organic matter, and providing firm substrates in this otherwise soft environment.

Oyster Shell Dredging in Gulf of Mexico Waters, St. Mary and Terrebonne Parishes, Louisiana. Final Environmental Impact Statement and Appendixes

DTIC Science & Technology

1994-04-01

sabinae Sabine shiner x Notropis texanus weed shiner x Notropis volucellus mimic shiner X Ogeocephalus radiatus polka-dot bat fish x Oligoplites saurus ...Elope saurus ladyfish x x Erimyzon oblongus creek chubsucker x Esox americanus vermiculatus grass pickerel x Etheostoma chiorosomum, bluntnose darter

76 FR 79227 - Exemption Request Submitted by Oyster Creek Nuclear Generating Station; Exelon Generation Company...

Federal Register 2010, 2011, 2012, 2013, 2014

2011-12-21

... Commission. ACTION: Environmental assessment and finding of no significant impact. SUPPLEMENTARY INFORMATION... included as Attachment 3 to the licensee's exemption request. Environmental Impacts of the Proposed Action... any environmental impacts that would be incurred by performance of the drill (e.g., use of roads or...

77 FR 135 - Exelon Generation Company, LLC, Oyster Creek Nuclear Generating Station; Exemption

Federal Register 2010, 2011, 2012, 2013, 2014

2012-01-03

...) exercise from September 27, 2011, to June 2012. The licensee's request states that Hurricane Irene passed... that OCNGS reschedule specific functions of the offsite portion of the biennial EP exercise scheduled... postpone the exercise until 2012, citing the ongoing response to the Hurricane Irene aftermath. By letter...

Undergraduates in the lab: Analyzing metal and organic contaminants in oysters and sediments from southeastern North Carolina

NASA Astrophysics Data System (ADS)

Mead, R. N.; Kipp, L. E.; Liberatore, H.; Sherard, S.; Steagall, M.; Skrabal, S. A.

2016-02-01

A state-funded project to analyze a suite of metal and organic contaminants in oyster tissues and ambient sediments was carried out nearly exclusively by over 10 undergraduates at the University of North Carolina Wilmington. This study will present Concentrations of various trace metals (most notably arsenic, copper, mercury, and zinc) and organic contaminants (polycyclic aromatic hydrocarbons and the antibacterial, triclosan) have been determined in oyster tissues and adjacent sediments in New Hanover and Brunswick counties, southeastern North Carolina. Trace metals that exceeded national median levels at multiple sites in this study included arsenic, copper, and zinc. Elevated levels of arsenic (exceeding the national median and, often, the national 85th percentiles) in oyster tissues are characteristic of much of the southeastern United States; these elevations are attributed to high natural background levels in the underlying bedrock and sediments as well as historical contamination by arsenic-containing agricultural pesticides. Another metal of national concern is mercury; however, concentrations of this metal were mostly at the national median for oyster tissue. Polycyclic aromatic hydrocarbons (PAHs) barely exceeded or were near the national median at only 3 sites, 2 in Lockwood Folly estuary, Brunswick County and 1 at Bradley Creek, New Hanover County. Concentrations at the remaining sites were 4 to >10 times less than the national median. Triclosan, an antibacterial compound used in many consumer products, was found in oyster tissues and sediments at the 4 sites at which it was examined. Oyster tissues contained triclosan at levels 2 to 43 times as high as adjacent sediments, indicating its bioaccumulation potential. Levels of metals and PAHs in oyster tissues are consistently elevated near more urbanized areas but are unlikely to be at levels harmful for human consumption.

33 CFR 165.509 - Security Zone; Severn River and College Creek, Annapolis, MD.

Code of Federal Regulations, 2010 CFR

2010-07-01

... College Creek, Annapolis, MD. 165.509 Section 165.509 Navigation and Navigable Waters COAST GUARD... § 165.509 Security Zone; Severn River and College Creek, Annapolis, MD. (a) Definitions. For purposes of... the Naval Academy waterfront. This security zone includes the waters of College Creek eastward of the...

Fault pattern at the northern end of the Death Valley - Furnace Creek fault zone, California and Nevada

NASA Technical Reports Server (NTRS)

Liggett, M. A. (Principal Investigator); Childs, J. F.

1974-01-01

The author has identified the following significant results. The pattern of faulting associated with the termination of the Death Valley-Furnace Creek Fault Zone in northern Fish Lake Valley, Nevada was studied in ERTS-1 MSS color composite imagery and color IR U-2 photography. Imagery analysis was supported by field reconnaissance and low altitude aerial photography. The northwest-trending right-lateral Death Valley-Furnace Creek Fault Zone changes northward to a complex pattern of discontinuous dip slip and strike slip faults. This fault pattern terminates to the north against an east-northeast trending zone herein called the Montgomery Fault Zone. No evidence for continuation of the Death Valley-Furnace Creek Fault Zone is recognized north of the Montgomery Fault Zone. Penecontemporaneous displacement in the Death Valley-Furnace Creek Fault Zone, the complex transitional zone, and the Montgomery Fault Zone suggests that the systems are genetically related. Mercury mineralization appears to have been localized along faults recognizable in ERTS-1 imagery within the transitional zone and the Montgomery Fault Zone.

76 FR 19488 - Exelon Generation Company, LLC, Oyster Creek Nuclear Generating Station; Exemption

Federal Register 2010, 2011, 2012, 2013, 2014

2011-04-07

... fuel sources consisting primarily of cable insulation and limited floor based combustibles except areas... heat or smoke that may be produced during a fire event. Additionally, the main combustible in this area... the area is open to the atmosphere with no walls or ceiling to contain the heat or smoke that may be...

Structural and compositional characterization of the adhesive produced by reef building oysters.

PubMed

Alberts, Erik M; Taylor, Stephen D; Edwards, Stephanie L; Sherman, Debra M; Huang, Chia-Ping; Kenny, Paul; Wilker, Jonathan J

2015-04-29

Oysters have an impressive ability to overcome difficulties of life within the stressful intertidal zone. These shellfish produce an adhesive for attaching to each other and building protective reef communities. With their reefs often exceeding kilometers in length, oysters play a major role in balancing the health of coastal marine ecosystems. Few details are available to describe oyster adhesive composition or structure. Here several characterization methods were applied to describe the nature of this material. Microscopy studies indicated that the glue is comprised of organic fiber-like and sheet-like structures surrounded by an inorganic matrix. Phospholipids, cross-linking chemistry, and conjugated organics were found to differentiate this adhesive from the shell. Symbiosis in material synthesis could also be present, with oysters incorporating bacterial polysaccharides into their adhesive. Oyster glue shows that an organic-inorganic composite material can provide adhesion, a property especially important when constructing a marine ecosystem.

Oyster Saccostrea cucullata as a biomonitor for Hg contamination and the risk to humans on the coast of Qeshm Island, Persian Gulf, Iran.

PubMed

Shirneshan, Golshan; Bakhtiari, Alireza Riyahi; Kazemi, Ali; Mohamadi, Mohsen; Kheirabadi, Nabiallah

2012-06-01

A total of 174 individuals of rocky oysters (Saccostrea cucullata) and 35 surface sediment samples were collected from seven stations off the intertidal zones of Qeshm Island, Persian Gulf, in order to study the concentration of mercury in oysters' tissues, and to investigate whether mercury concentrations in the edible soft tissues are within the permissible limits for public health. The average mercury concentrations were found as 3.44, 50.66 and 2.29 μg kg(-1) dw in the sediments, soft tissues and shells of the oysters, respectively. Results indicated that the levels of mercury in sediment differed significantly between the stations. In addition, results confirmed that the soft tissues of oysters could be a good indicator of mercury in the aquatic system. In comparison with food safety standards, mercury levels in oysters were well within the permissible limits for human consumption.

76 FR 19795 - Exelon Generation Company, LLC; Oyster Creek Nuclear Generating Station; Exemption

Federal Register 2010, 2011, 2012, 2013, 2014

2011-04-08

... Recirculation and close V-11- Motor Generator 63 and V-11-41. (MG) Set Room Elev. 23'-6''. Manually open V- 12... ``Alternate'' and operate Control Switch on Diesel Panel to start diesel). Manually re-close 6 MCC 1B32 Feeder... transfer Switches (3 total) to ``Alternate'' and operate Control Switch on Diesel Panel to start diesel...

Climatic fluctuations and seasonality during the Late Jurassic (Oxfordian-Early Kimmeridgian) inferred from δ18O of Paris Basin oyster shells

NASA Astrophysics Data System (ADS)

Brigaud, Benjamin; Pucéat, Emmanuelle; Pellenard, Pierre; Vincent, Benoît; Joachimski, Michael M.

2008-08-01

Oxygen isotope data from biostratigraphically well-dated oyster shells from the Late Jurassic of the eastern Paris Basin are used to reconstruct the thermal evolution of western Tethyan surface waters during the Early Oxfordian-Early Kimmeridgian interval. Seventy eight oyster shells were carefully screened for potential diagenetic alteration using cathodoluminescence microscopy. Isotope analyses were performed on non-luminescent parts of shells (n = 264). Intra-shell δ18O variability was estimated by microsampling along a transect perpendicular to the growth lines of the largest oyster shell. The sinusoidal distribution of the δ18O values along this transect and the dependence of the amplitude of variations with bathymetry suggest that intra-shell variability reflects seasonal variations of temperature and/or salinity. Average amplitudes of about 5 °C in shallow water environments and of about 2-3 °C in deeper offshore environments are calculated. These amplitudes reflect minimum seasonal temperature variation. Our new data allow to constrain existing paleotemperature trends established from fish tooth and belemnite δ18O data and are in better agreement with paleontological data. More specifically, a warming trend of about 3 °C is reconstructed for oceanic surface waters during the Early to Middle Oxfordian transition, with maximum temperatures reaching 24 °C in the transversarium Zone (late Middle Oxfordian). From the transversarium Zone to the bimmamatum Zone, a cooling of about 7 °C is indicated, whereas from the bimmamatum Zone, temperatures increased again by about 7 °C to reach 24 °C in average during the cymodoce Zone (Early Kimmeridgian).

75 FR 34639 - Safety Zone; Reedville July 4th Celebration, Cockrell's Creek, Reedville, VA

Federal Register 2010, 2011, 2012, 2013, 2014

2010-06-18

...-AA00 Safety Zone; Reedville July 4th Celebration, Cockrell's Creek, Reedville, VA AGENCY: Coast Guard... Cockrell's Creek in the vicinity of Reedville, Virginia in support of the Reedville July 4th Celebration... notice of proposed rulemaking (NPRM) entitled Reedville July 4th Celebration, Cockrell's Creek, Reedville...

Southeastern extension of the Lake Basin fault zone in south- central Montana: implications for coal and hydrocarbon exploration ( USA).

USGS Publications Warehouse

Robinson, L.N.; Barnum, B.E.

1986-01-01

The Lake Basin fault zone consists mainly of en echelon NE-striking normal faults that have been interpreted to be surface expressions of left-lateral movement along a basement wrench fault. Information gathered from recent field mapping of coal beds and from shallow, closely-spaced drill holes resulted in detailed coal bed correlations, which revealed another linear zone of en echelon faulting directly on the extended trend of the Lake Basin fault zone. This faulted area, referred to as the Sarpy Creek area, is located 48 km E of Hardin, Montana. It is about 16 km long, 13 km wide, and contains 21 en echelon normal faults that have an average strike of N 63oE. We therefore extend the Lake Basin fault zone 32 km farther SE than previously mapped to include the Sarpy Creek area. The Ash Creek oil field, Wyoming, 97 km due S of the Sarpy Creek area, produces from faulted anticlinal structues that have been interpreted to be genetically related to the primary wrench-fault system known as the Nye-Bowler fault zone. The structural similarities between the Sarpy Creek area and the Ash Creek area indicate that the Sarpy Creek area is a possible site for hydrocarbon accumulation.-from Authors

77 FR 74784 - Safety Zone for Recovery Operations for East Jefferson Street Train Derailment, Mantua Creek...

Federal Register 2010, 2011, 2012, 2013, 2014

2012-12-18

... 1625-AA00 Safety Zone for Recovery Operations for East Jefferson Street Train Derailment, Mantua Creek... establishing a safety zone one mile north and one mile south of the East Jefferson Street Railroad Bridge... materials into Mantua Creek and the surrounding air. This regulation is necessary to provide for the safety...

78 FR 3326 - Safety Zone Within the Lower Portion of Anchorage #9, Mantua Creek Anchorage; Paulsboro, NJ

Federal Register 2010, 2011, 2012, 2013, 2014

2013-01-16

... 1625-AA00 Safety Zone Within the Lower Portion of Anchorage 9, Mantua Creek Anchorage; Paulsboro, NJ... temporary safety zone around the southern one-third of Anchorage 9 (Mantua Creek Anchorage) due to dredging... through this portion of the anchorage. This regulation is necessary to provide for the safety of life on...

33 CFR 334.855 - Salt River, Rolling Fork River, Otter Creek; U.S. Army Garrison, Fort Knox Military Reservation...

Code of Federal Regulations, 2014 CFR

2014-07-01

..., Otter Creek; U.S. Army Garrison, Fort Knox Military Reservation; Fort Knox, Kentucky; danger zone. 334..., DEPARTMENT OF DEFENSE DANGER ZONE AND RESTRICTED AREA REGULATIONS § 334.855 Salt River, Rolling Fork River, Otter Creek; U.S. Army Garrison, Fort Knox Military Reservation; Fort Knox, Kentucky; danger zone. (a...

33 CFR 334.855 - Salt River, Rolling Fork River, Otter Creek; U.S. Army Garrison, Fort Knox Military Reservation...

Code of Federal Regulations, 2012 CFR

2012-07-01

..., Otter Creek; U.S. Army Garrison, Fort Knox Military Reservation; Fort Knox, Kentucky; danger zone. 334..., DEPARTMENT OF DEFENSE DANGER ZONE AND RESTRICTED AREA REGULATIONS § 334.855 Salt River, Rolling Fork River, Otter Creek; U.S. Army Garrison, Fort Knox Military Reservation; Fort Knox, Kentucky; danger zone. (a...

78 FR 11099 - Safety Zone Within the Lower Portion of Anchorage #9, Mantua Creek Anchorage; Paulsboro, NJ

Federal Register 2010, 2011, 2012, 2013, 2014

2013-02-15

... 1625-AA00 Safety Zone Within the Lower Portion of Anchorage 9, Mantua Creek Anchorage; Paulsboro, NJ... temporary safety zone around the southern one-third of Anchorage 9 (Mantua Creek Anchorage), below position 39[deg] 51.573 N-075[deg] 13.557 W due to dredging operations. The Dredge Florida will be working...

33 CFR 334.855 - Salt River, Rolling Fork River, Otter Creek; U.S. Army Garrison, Fort Knox Military Reservation...

Code of Federal Regulations, 2011 CFR

2011-07-01

..., Otter Creek; U.S. Army Garrison, Fort Knox Military Reservation; Fort Knox, Kentucky; danger zone. 334..., DEPARTMENT OF DEFENSE DANGER ZONE AND RESTRICTED AREA REGULATIONS § 334.855 Salt River, Rolling Fork River, Otter Creek; U.S. Army Garrison, Fort Knox Military Reservation; Fort Knox, Kentucky; danger zone. (a...

33 CFR 334.855 - Salt River, Rolling Fork River, Otter Creek; U.S. Army Garrison, Fort Knox Military Reservation...

Code of Federal Regulations, 2010 CFR

2010-07-01

..., Otter Creek; U.S. Army Garrison, Fort Knox Military Reservation; Fort Knox, Kentucky; danger zone. 334..., DEPARTMENT OF DEFENSE DANGER ZONE AND RESTRICTED AREA REGULATIONS § 334.855 Salt River, Rolling Fork River, Otter Creek; U.S. Army Garrison, Fort Knox Military Reservation; Fort Knox, Kentucky; danger zone. (a...

33 CFR 334.855 - Salt River, Rolling Fork River, Otter Creek; U.S. Army Garrison, Fort Knox Military Reservation...

Code of Federal Regulations, 2013 CFR

2013-07-01

..., Otter Creek; U.S. Army Garrison, Fort Knox Military Reservation; Fort Knox, Kentucky; danger zone. 334..., DEPARTMENT OF DEFENSE DANGER ZONE AND RESTRICTED AREA REGULATIONS § 334.855 Salt River, Rolling Fork River, Otter Creek; U.S. Army Garrison, Fort Knox Military Reservation; Fort Knox, Kentucky; danger zone. (a...

The late Cenomanian oyster Lopha staufferi (Bergquist, 1944) - the oldest ribbed oyster in the Upper Cretaceous of the Western Interior of the United States

NASA Astrophysics Data System (ADS)

Hook, Stephen C.; Cobban, William A.

2016-12-01

Lopha staufferi (Bergquist, 1944) is a medium-sized, ribbed, Late Cretaceous oyster with a slightly curved axis and a zigzag commissure; it appears suddenly and conspicuously in upper Cenomanian rocks in the Western Interior Basin of the United States. At maturity, the ribs on both valves thicken into steep flanks that allow the oyster to increase interior volume without increasing its exterior footprint on the seafloor. Lopha staufferi is the first (earliest) ribbed oyster in the Late Cretaceous of the Western Interior, but has no ancestor in the basin. It disappears from the rock record as suddenly as it appeared, leaving no direct descendent in the basin. In the southern part of the basin where it is well constrained, L. staufferi is restricted stratigraphically to the upper Cenomanian Metoicoceras mosbyense Zone (= Dunveganoceras conditum Zone in the north). Lopha staufferi has an unusual paleogeographic distribution, occurring in only two, widely scattered areas in the basin. It has been found at several localities near the western shoreline of the Late Cretaceous Seaway in west-central New Mexico and adjacent Arizona, and in localities 1,900 km (1,200 mi) to the northeast near the eastern shoreline in northeastern Minnesota, but nowhere in between. In west-central New Mexico and adjacent Arizona, L. staufferi is a guide fossil to the Twowells Tongue of the Dakota Sandstone.

Immune and stress responses in oysters with insights on adaptation.

PubMed

Guo, Ximing; He, Yan; Zhang, Linlin; Lelong, Christophe; Jouaux, Aude

2015-09-01

Oysters are representative bivalve molluscs that are widely distributed in world oceans. As successful colonizers of estuaries and intertidal zones, oysters are remarkably resilient against harsh environmental conditions including wide fluctuations in temperature and salinity as well as prolonged air exposure. Oysters have no adaptive immunity but can thrive in microbe-rich estuaries as filter-feeders. These unique adaptations make oysters interesting models to study the evolution of host-defense systems. Recent advances in genomic studies including sequencing of the oyster genome have provided insights into oyster's immune and stress responses underlying their amazing resilience. Studies show that the oyster genomes are highly polymorphic and complex, which may be key to their resilience. The oyster genome has a large gene repertoire that is enriched for immune and stress response genes. Thousands of genes are involved in oyster's immune and stress responses, through complex interactions, with many gene families expanded showing high sequence, structural and functional diversity. The high diversity of immune receptors and effectors may provide oysters with enhanced specificity in immune recognition and response to cope with diverse pathogens in the absence of adaptive immunity. Some members of expanded immune gene families have diverged to function at different temperatures and salinities or assumed new roles in abiotic stress response. Most canonical innate immunity pathways are conserved in oysters and supported by a large number of diverse and often novel genes. The great diversity in immune and stress response genes exhibited by expanded gene families as well as high sequence and structural polymorphisms may be central to oyster's adaptation to highly stressful and widely changing environments. Copyright © 2015 Elsevier Ltd. All rights reserved.

33 CFR 334.240 - Potomac River, Mattawoman Creek and Chicamuxen Creek; U.S. Naval Surface Weapons Center, Indian...

Code of Federal Regulations, 2010 CFR

2010-07-01

... 33 Navigation and Navigable Waters 3 2010-07-01 2010-07-01 false Potomac River, Mattawoman Creek..., DEPARTMENT OF DEFENSE DANGER ZONE AND RESTRICTED AREA REGULATIONS § 334.240 Potomac River, Mattawoman Creek...) The danger zone. Beginning at a point on the easterly shore of the Potomac River at latitude 38°36′00...

33 CFR 334.240 - Potomac River, Mattawoman Creek and Chicamuxen Creek; U.S. Naval Surface Weapons Center, Indian...

Code of Federal Regulations, 2012 CFR

2012-07-01

... 33 Navigation and Navigable Waters 3 2012-07-01 2012-07-01 false Potomac River, Mattawoman Creek..., DEPARTMENT OF DEFENSE DANGER ZONE AND RESTRICTED AREA REGULATIONS § 334.240 Potomac River, Mattawoman Creek...) The danger zone. Beginning at a point on the easterly shore of the Potomac River at latitude 38°36′00...

33 CFR 334.240 - Potomac River, Mattawoman Creek and Chicamuxen Creek; U.S. Naval Surface Weapons Center, Indian...

Code of Federal Regulations, 2014 CFR

2014-07-01

... 33 Navigation and Navigable Waters 3 2014-07-01 2014-07-01 false Potomac River, Mattawoman Creek..., DEPARTMENT OF DEFENSE DANGER ZONE AND RESTRICTED AREA REGULATIONS § 334.240 Potomac River, Mattawoman Creek...) The danger zone. Beginning at a point on the easterly shore of the Potomac River at latitude 38°36′00...

33 CFR 334.240 - Potomac River, Mattawoman Creek and Chicamuxen Creek; U.S. Naval Surface Weapons Center, Indian...

Code of Federal Regulations, 2013 CFR

2013-07-01

... 33 Navigation and Navigable Waters 3 2013-07-01 2013-07-01 false Potomac River, Mattawoman Creek..., DEPARTMENT OF DEFENSE DANGER ZONE AND RESTRICTED AREA REGULATIONS § 334.240 Potomac River, Mattawoman Creek...) The danger zone. Beginning at a point on the easterly shore of the Potomac River at latitude 38°36′00...

33 CFR 334.240 - Potomac River, Mattawoman Creek and Chicamuxen Creek; U.S. Naval Surface Weapons Center, Indian...

Code of Federal Regulations, 2011 CFR

2011-07-01

... 33 Navigation and Navigable Waters 3 2011-07-01 2011-07-01 false Potomac River, Mattawoman Creek..., DEPARTMENT OF DEFENSE DANGER ZONE AND RESTRICTED AREA REGULATIONS § 334.240 Potomac River, Mattawoman Creek...) The danger zone. Beginning at a point on the easterly shore of the Potomac River at latitude 38°36′00...

Heavy metals in oysters, mussels and clams collected from coastal sites along the Pearl River Delta, South China.

PubMed

Fang, Zhan-Qiang; Cheung, R Y H; Wong, M H

2003-01-01

Concentrations of 8 heavy metals: cadmium (Cd), copper (Cu), zinc (Zn), lead (Pb), nickel (Ni), chromium (Cr), antimony (Sb) and tin (Sn) were examined in 3 species of bivalves ( Perna viridis, Crassostrea rivularis and Ruditapes philippinarum) collected from 25 sites along the Pearl River Delta coastal waters in the South China Sea from July to August 1996. In general, Cd, Cu, Zn and Sn concentrations in the three bivalve species collected from the Estuarine Zone were significantly higher than those collected from the Western and Eastern Zones of the Pearl River Delta, which are related to the existence of various anthropogenic activities in the catchment of the Pearl River Delta. The Western Estuarine Zone is mainly impacted hy Cr, Ni and Cu contamination. In Victoria Harbor, heavy metal contamination is mainly due to Cu and Pb, Cd, Cu and Zn concentrations in oysters were significantly higher than those in mussels and clams. This could be explained by the fact that oysters live mainly in the Estuarine Zone of the Pearl River Delta which receives most of the polluting discharges from the catchment of the Delta. During turbid condition, heavy metals( soluble or adsorbed on suspended particulates) discharged from the Delta are filtered from the water column and subsequently accumulated into the soft body tissues of oysters. Heavy metal concentrations in the three bivalve species were compared with the maximum permissible levels of heavy metals in seafood regulated by the Public Health and Municipal Services Ordinance, Laws of Hong Kong, and it was revealed that Cd and Cr concentrations in the three bivalve species exceeded the upper limits. At certain hotspots in the Delta, the maximum acceptable daily load for Cd was also exceeded.

Analysis of ground-water flow in the Madison aquifer using fluorescent dyes injected in Spring Creek and Rapid Creek near Rapid City, South Dakota, 2003-04

USGS Publications Warehouse

Putnam, Larry D.; Long, Andrew J.

2007-01-01

The Madison aquifer, which contains fractures and solution openings in the Madison Limestone, is used extensively for water supplies for the city of Rapid City and other suburban communities in the Rapid City, S. Dak., area. The 48 square-mile study area includes the west-central and southwest parts of Rapid City and the outcrops of the Madison Limestone extending from south of Spring Creek to north of Rapid Creek. Recharge to the Madison Limestone occurs when streams lose flow as they cross the outcrop. The maximum net loss rate for Spring and Rapid Creek loss zones are 21 and 10 cubic feet per second (ft3/s), respectively. During 2003 and 2004, fluorescent dyes were injected in the Spring and Rapid Creek loss zones to estimate approximate locations of preferential flow paths in the Madison aquifer and to measure the response and transit times at wells and springs. Four injections of about 2 kilograms of fluorescein dye were made in the Spring Creek loss zone during 2003 (sites S1, S2, and S3) and 2004 (site S4). Injection at site S1 was made in streamflow just upstream from the loss zone over a 12-hour period when streamflow was about equal to the maximum loss rate. Injections at sites S2, S3, and S4 were made in specific swallow holes located in the Spring Creek loss zone. Injection at site R1 in 2004 of 3.5 kilograms of Rhodamine WT dye was made in streamflow just upstream from the Rapid Creek loss zone over about a 28-hour period. Selected combinations of 27 wells, 6 springs, and 3 stream sites were monitored with discrete samples following the injections. For injections at sites S1-S3, when Spring Creek streamflow was greater than or equal to 20 ft3/s, fluorescein was detected in samples from five wells that were located as much as about 2 miles from the loss zone. Time to first arrival (injection at site S1) ranged from less than 1 to less than 10 days. The maximum fluorescein concentration (injection at site S1) of 120 micrograms per liter (ug/L) at well CO, which is located adjacent to the loss zone, was similar to the concentration in the stream. Fluorescein arrived at well NON (injection at site S1), which is located about 2 miles northeast of the loss zone, within about 1.6 days, and the maximum concentration was 44 ug/L. For injection at site S4, when streamflow was about 12 ft3/s, fluorescein was detected in samples from six wells and time to first arrival ranged from 0.2 to 16 days. Following injection at site S4 in 2004, the length of time that dye remained in the capture zone of well NON, which is located approximately 2 miles from the loss zone, was almost an order of magnitude greater than in 2003. For injection at site R1, Rhodamine WT was detected at well DRU and spring TI-SP with time to first arrival of about 0.5 and 1.1 days and maximum concentrations of 6.2 and 0.91 ug/L, respectively. Well DRU and spring TI-SP are located near the center of the Rapid Creek loss zone where the creek has a large meander. Measurable concentrations were observed for spring TI-SP as many as 109 days after the dye injection. The direction of a conduit flow path in the Spring Creek area was to the northeast with ground-water velocities that ranged from 770 to 6,500 feet per day. In the Rapid Creek loss zone, a conduit flow path east of the loss zone was not evident from the dye injection.

Seasonal variations and relationships between environmental parameters and heavy metal concentrations in tissues of Crassostrea species and in its ambience from the tropical estuaries.

PubMed

Shenai-Tirodkar, Prachi; Gauns, Mangesh; Kumar, Girish; Ansari, Zakir

2018-05-15

This study aimed to evaluate the relationship between physicochemical parameters and heavy metal (Cu, Ni, Pb, and Cd) concentrations from sediment, seawater, and its accumulation in tissues of oyster species (Crassostrea madrasensis and C. gryphoides) from the three sites (Chicalim Bay (CB), Nerul Creek (NC), Chapora Bay (ChB)) along the Goa coast (India). Results showed enrichment of Cu and Ni in sediment exceeding the effect range low (ERL) level. The higher concentrations of Cu and Ni in sediments and in suspended particulate matter (SPM) from all the study sites are indicative of severe contamination of estuarine and associated habitats. Moreover, particulate Ni (at all the sites), Cu (at NC and ChB), Pb (at NC), and Cd (at CB and NC) concentrations were recorded more than its total loadings in surface sediment. Concentration of Cu and Cd in oyster tissue was several folds higher than its concentration in ambience. Further, this study showed that the levels of metal in oysters and their ambient environment were higher during the monsoon season. Hence, the consumption of oysters needs to be considered carefully with respect to the health hazards posed by the elevated levels of metal contaminants in certain seasons. The present study concludes that metals associated with the particulate matter in water column are the main source of metal accumulation in oyster. It is also suggested that concentration of metal pollutants in coastal and estuarine water bodies should be monitored regularly to ensure the acceptable limits of metal concentrations.

Microplastics in oysters Saccostrea cucullata along the Pearl River Estuary, China.

PubMed

Li, Heng-Xiang; Ma, Li-Sha; Lin, Lang; Ni, Zhi-Xin; Xu, Xiang-Rong; Shi, Hua-Hong; Yan, Yan; Zheng, Guang-Ming; Rittschof, Daniel

2018-05-01

As a transitional zone between riverine and marine environments, an estuary plays an important role for the sources, accumulation and transport of microplastics. Although estuarine environments are hotspots of microplastic pollution, the correlation between microplastic pollution and aquatic organisms is less known. Here we investigated microplastic pollution in wild oysters Saccostrea cucullata from 11 sampling sites along the Pearl River Estuary in South China. The microplastic abundances in oysters ranged from 1.4 to 7.0 items per individual or from 1.5 to 7.2 items per gram tissue wet weight, which were positively related to those in surrounding waters. The oysters near urban areas contained significantly more microplastics than those near rural areas. Fibers accounted for 69.4% of the total microplastics in oysters. Microplastic sizes varied from 20 to 5000 μm and 83.9% of which were less than 100 μm. Light color microplastics were significantly more common than dark color ones. Based on the results, oysters are recommended as a biomonitor for the microplastic pollution in estuaries. Copyright © 2018 Elsevier Ltd. All rights reserved.

Associations between land use and Perkinsus marinus infection of eastern oysters in a high salinity, partially urbanized estuary

USGS Publications Warehouse

Gray, Brian R.; Bushek, David; Drane, J. Wanzer; Porter, Dwayne

2009-01-01

Infection levels of eastern oysters by the unicellular pathogen Perkinsus marinus have been associated with anthropogenic influences in laboratory studies. However, these relationships have been difficult to investigate in the field because anthropogenic inputs are often associated with natural influences such as freshwater inflow, which can also affect infection levels. We addressed P. marinus-land use associations using field-collected data from Murrells Inlet, South Carolina, USA, a developed, coastal estuary with relatively minor freshwater inputs. Ten oysters from each of 30 reefs were sampled quarterly in each of 2 years. Distances to nearest urbanized land class and to nearest stormwater outfall were measured via both tidal creeks and an elaboration of Euclidean distance. As the forms of any associations between oyster infection and distance to urbanization were unknown a priori, we used data from the first and second years of the study as exploratory and confirmatory datasets, respectively. With one exception, quarterly land use associations identified using the exploratory dataset were not confirmed using the confirmatory dataset. The exception was an association between the prevalence of moderate to high infection levels in winter and decreasing distance to nearest urban land use. Given that the study design appeared adequate to detect effects inferred from the exploratory dataset, these results suggest that effects of land use gradients were largely insubstantial or were ephemeral with duration less than 3 months.

Herbicide Transport and Transformations in the Unsaturated Zone of Three Small Agricultural Basins with Corn and Soybean Row Crops

NASA Astrophysics Data System (ADS)

Hancock, T. C.; Vogel, J. R.; Sandstrom, M. W.; Capel, P. D.; Bayless, R. E.; Webb, R. M.

2006-05-01

In the United States, herbicides are among the most significant nonpoint-source pollutants and were applied to 95% of all fields in corn production and 97% of all fields in soybean production in 2003 and 2004. The United States Geological Survey (USGS) has conducted a study on select herbicides in the unsaturated zone under corn and soybean fields in three predominantly agricultural basins: Morgan Creek (Maryland), Leary Weber Ditch within Sugar Creek (Indiana), and Maple Creek (Nebraska). In 2004, the Morgan Creek and Leary Weber Ditch fields were in soybeans and the Maple Creek fields were in corn. The Maple Creek fields were irrigated, whereas those in Morgan Creek and Leary Weber Ditch were not. Similarities and differences in agricultural management practices, climatic conditions, and natural features, such as soil types and geology, were evaluated as part of the study. In general, the amounts of herbicides entering the unsaturated zone from rain in these basins were minor (1%) compared to amounts commonly applied to the land surface during agricultural practices. Few herbicides were detected on solid core samples from the unsaturated zones of these basins. An exception was found at a Morgan Creek site in an upland recharge area with sandier soils. Here, atrazine concentrations were highest in the near surface solids and decreased with depth. In the unsaturated-zone porewater of the Morgan Creek Basin, parent triazine and acetanilide herbicides were detected and only at the site in the upland recharge area at relatively low concentrations at depths greater than 4 meters, probably because these compounds had not been applied for several years. At the Morgan Creek and Leary Weber Ditch sites, acetanilide metabolites were frequently detected in the unsaturated-zone porewater. In general, the fraction of metolachlor ethane sulfonic acid (ESA) relative to the total mass of parent and metabolites increased with depth overall and at several individual sampling locations this fraction increased over time. At the Maple Creek sites, atrazine, metalochlor, acetochlor, and alachlor were detected, typically at concentrations higher than their metabolites. The Maple Creek site is influenced by focused recharge, macropore flow, and variable soil-moisture retention properties in soils that transition from loess to sand.

Nutrient bioassimilation capacity of aquacultured oysters: quantification of an ecosystem service.

PubMed

Higgins, Colleen B; Stephenson, Kurt; Brown, Bonnie L

2011-01-01

Like many coastal zones and estuaries, the Chesapeake Bay has been severely degraded by cultural eutrophication. Rising implementation costs and difficulty achieving nutrient reduction goals associated with point and nonpoint sources suggests that approaches supplemental to source reductions may prove useful in the future. Enhanced oyster aquaculture has been suggested as one potential policy initiative to help rid the Bay waters of excess nutrients via harvest of bioassimilated nutrients. To assess this potential, total nitrogen (TN), total phosphorous (TP), and total carbon (TC) content were measured in oyster tissue and shell at two floating-raft cultivation sites in the Chesapeake Bay. Models were developed based on the common market measurement of total length (TL) for aquacultured oysters, which was strongly correlated to the TN (R2 = 0.76), TP (R2 = 0.78), and TC (R2 = 0.76) content per oyster tissue and shell. These models provide resource managers with a tool to quantify net nutrient removal. Based on model estimates, 10(6) harvest-sized oysters (76 mm TL) remove 132 kg TN, 19 kg TP, and 3823 kg TC. In terms of nutrients removed per unit area, oyster harvest is an effective means of nutrient removal compared with other nonpoint source reduction strategies. At a density of 286 oysters m(-2), assuming no mortality, harvest size nutrient removal rates can be as high as 378 kg TN ha(-1), 54 kg TP ha(-1), and 10,934 kg TC ha(-1) for 76-mm oysters. Removing 1 t N from the Bay would require harvesting 7.7 million 76-mm TL cultivated oysters.

Intertidal oysters reach their physiological limit in a future high-CO2 world.

PubMed

Scanes, Elliot; Parker, Laura M; O'Connor, Wayne A; Stapp, Laura S; Ross, Pauline M

2017-03-01

Sessile marine molluscs living in the intertidal zone experience periods of internal acidosis when exposed to air (emersion) during low tide. Relative to other marine organisms, molluscs have been identified as vulnerable to future ocean acidification; however, paradoxically it has also been shown that molluscs exposed to high CO 2 environments are more resilient compared with those molluscs naive to CO 2 exposure. Two competing hypotheses were tested using a novel experimental design incorporating tidal simulations to predict the future intertidal limit of oysters in a high-CO 2 world; either high-shore oysters will be more tolerant of elevated P CO 2 because of their regular acidosis, or elevated P CO 2  will cause high-shore oysters to reach their limit. Sydney rock oysters, Saccostrea glomerata , were collected from the high-intertidal and subtidal areas of the shore and exposed in an orthogonal design to either an intertidal or a subtidal treatment at ambient or elevated P CO 2 , and physiological variables were measured. The combined treatment of tidal emersion and elevated P CO 2  interacted synergistically to reduce the haemolymph pH (pH e ) of oysters, and increase the P CO 2  in the haemolymph ( P e,CO 2 ) and standard metabolic rate. Oysters in the intertidal treatment also had lower condition and growth. Oysters showed a high degree of plasticity, and little evidence was found that intertidal oysters were more resilient than subtidal oysters. It is concluded that in a high-CO 2 world the upper vertical limit of oyster distribution on the shore may be reduced. These results suggest that previous studies on intertidal organisms that lacked tidal simulations may have underestimated the effects of elevated P CO 2 . © 2017. Published by The Company of Biologists Ltd.

A narrow hybrid zone between two Cottus species in Wills Creek, Potomac drainage.

PubMed

Kinziger, A P; Raesly, R L

2001-01-01

We describe a narrow hybrid zone between the mottled sculpin (Cottus b. bairdi) and the Blue Ridge sculpin (C. caeruleomentum). Seven characters (dorsal fin rays, pectoral fin rays, caudal base band condition, male spawning coloration, and one frequency and two fixed allozyme differences) distinguish the two taxa in the hybrid zone. C. caeruleomentum and C. b. bairdi diverged in these characters in allopatry as indicated by their distribution on opposite sides of the Atlantic-Ohio divide. However, a stream capture placed these two taxa in secondary contact in Wills Creek, Potomac drainage (Atlantic slope). Allozyme data indicate the presence of post-F(1) hybrids in the zone of secondary contact. Changes in allozymes, morphology, and spawning coloration along a transect in Wills Creek reveal the hybrid zone is less than 20 river kilometers in length. Estimates of root mean square dispersal and gene flow tentatively suggest that selection is operating in the Wills Creek hybrid zone. C. b. bairdi and C. caeruleomentum are maintaining their identity in seven distinguishing characters on opposite ends of the hybrid zone revealing these two taxa are independent evolutionary lineages.

33 CFR 165.553 - Security Zone; Salem and Hope Creek Generation Stations, Delaware River, Salem County, New Jersey.

Code of Federal Regulations, 2011 CFR

2011-07-01

... 33 Navigation and Navigable Waters 2 2011-07-01 2011-07-01 false Security Zone; Salem and Hope... Limited Access Areas Fifth Coast Guard District § 165.553 Security Zone; Salem and Hope Creek Generation Stations, Delaware River, Salem County, New Jersey. (a) Location. The following area is a security zone...

33 CFR 165.553 - Security Zone; Salem and Hope Creek Generation Stations, Delaware River, Salem County, New Jersey.

Code of Federal Regulations, 2014 CFR

2014-07-01

... 33 Navigation and Navigable Waters 2 2014-07-01 2014-07-01 false Security Zone; Salem and Hope... Limited Access Areas Fifth Coast Guard District § 165.553 Security Zone; Salem and Hope Creek Generation Stations, Delaware River, Salem County, New Jersey. (a) Location. The following area is a security zone...

33 CFR 165.553 - Security Zone; Salem and Hope Creek Generation Stations, Delaware River, Salem County, New Jersey.

Code of Federal Regulations, 2010 CFR

2010-07-01

... 33 Navigation and Navigable Waters 2 2010-07-01 2010-07-01 false Security Zone; Salem and Hope... Limited Access Areas Fifth Coast Guard District § 165.553 Security Zone; Salem and Hope Creek Generation Stations, Delaware River, Salem County, New Jersey. (a) Location. The following area is a security zone...

33 CFR 165.553 - Security Zone; Salem and Hope Creek Generation Stations, Delaware River, Salem County, New Jersey.

Code of Federal Regulations, 2012 CFR

2012-07-01

... 33 Navigation and Navigable Waters 2 2012-07-01 2012-07-01 false Security Zone; Salem and Hope... Limited Access Areas Fifth Coast Guard District § 165.553 Security Zone; Salem and Hope Creek Generation Stations, Delaware River, Salem County, New Jersey. (a) Location. The following area is a security zone...

33 CFR 165.553 - Security Zone; Salem and Hope Creek Generation Stations, Delaware River, Salem County, New Jersey.

Code of Federal Regulations, 2013 CFR

2013-07-01

... 33 Navigation and Navigable Waters 2 2013-07-01 2013-07-01 false Security Zone; Salem and Hope... Limited Access Areas Fifth Coast Guard District § 165.553 Security Zone; Salem and Hope Creek Generation Stations, Delaware River, Salem County, New Jersey. (a) Location. The following area is a security zone...

75 FR 52463 - Safety Zone; Raccoon Creek, Bridgeport, NJ

Federal Register 2010, 2011, 2012, 2013, 2014

2010-08-26

... comment period would be contrary to the rule's objectives of ensuring safety of life on the navigable... required. This rule involves a limited-in-duration safety zone intended to protect life and property on the...-AA00 Safety Zone; Raccoon Creek, Bridgeport, NJ AGENCY: Coast Guard, DHS. ACTION: Temporary final rule...

Expression Characterization of Stress Genes Under High and Low Temperature Stresses in the Pacific Oyster, Crassostrea gigas.

PubMed

Zhu, Qihui; Zhang, Linlin; Li, Li; Que, Huayong; Zhang, Guofan

2016-04-01

As a characteristic sessile inhabitant of the intertidal zone, the Pacific oyster Crassostrea gigas occupies one of the most physically stressful environments on earth. With high exposure to terrestrial conditions, oysters must tolerate broad fluctuations in temperature range. However, oysters' cellular and molecular responses to temperature stresses have not been fully characterized. Here, we analyzed oyster transcriptome data under high and low temperatures. We also identified over 30 key temperature stress-responsive candidate genes, which encoded stress proteins such as heat shock proteins and apoptosis-associated proteins. The expression characterization of these genes under short-term cold and hot environments (5 and 35 °C) and long-term cold environments (5 °C) was detected by quantitative real-time PCR. Most of these genes reached expression peaks during the recovery stage after 24 h of heat stress, and these genes were greatly induced around day 3 in long-term cold stress while responded little to short-term cold stress. In addition, in the second heat stress after 2 days of recovery, oysters showed milder expression in these genes and a lower mortality rate, which indicated the existence of plasticity in the oyster's response to heat stress. We confirmed that homeostatic flexibility and anti-apoptosis might be crucial centers of temperature stress responses in oysters. Furthermore, we analyzed stress gene families in 11 different species and found that the linage-specific expansion of stress genes might be implicated in adaptive evolution. These results indicated that both plasticity and evolution played an important role in the stress response adaptation of oysters.

Late Quaternary faulting along the Death Valley-Furnace Creek fault system, California and Nevada

USGS Publications Warehouse

Brogan, George E.; Kellogg, Karl; Slemmons, D. Burton; Terhune, Christina L.

1991-01-01

The Death Valley-Furnace Creek fault system, in California and Nevada, has a variety of impressive late Quaternary neotectonic features that record a long history of recurrent earthquake-induced faulting. Although no neotectonic features of unequivocal historical age are known, paleoseismic features from multiple late Quaternary events of surface faulting are well developed throughout the length of the system. Comparison of scarp heights to amount of horizontal offset of stream channels and the relationships of both scarps and channels to the ages of different geomorphic surfaces demonstrate that Quaternary faulting along the northwest-trending Furnace Creek fault zone is predominantly right lateral, whereas that along the north-trending Death Valley fault zone is predominantly normal. These observations are compatible with tectonic models of Death Valley as a northwest-trending pull-apart basin. The largest late Quaternary scarps along the Furnace Creek fault zone, with vertical separation of late Pleistocene surfaces of as much as 64 m (meters), are in Fish Lake Valley. Despite the predominance of normal faulting along the Death Valley fault zone, vertical offset of late Pleistocene surfaces along the Death Valley fault zone apparently does not exceed about 15 m. Evidence for four to six separate late Holocene faulting events along the Furnace Creek fault zone and three or more late Holocene events along the Death Valley fault zone are indicated by rupturing of Q1B (about 200-2,000 years old) geomorphic surfaces. Probably the youngest neotectonic feature observed along the Death Valley-Furnace Creek fault system, possibly historic in age, is vegetation lineaments in southernmost Fish Lake Valley. Near-historic faulting in Death Valley, within several kilometers south of Furnace Creek Ranch, is represented by (1) a 2,000-year-old lake shoreline that is cut by sinuous scarps, and (2) a system of young scarps with free-faceted faces (representing several faulting events) that cuts Q1B surfaces.

76 FR 35379 - Archers Creek, Ribbon Creek, and Broad River; U.S. Marine Corps Recruit Depot, Parris Island, SC...

Federal Register 2010, 2011, 2012, 2013, 2014

2011-06-17

..., Ribbon Creek, and Broad River; U.S. Marine Corps Recruit Depot, Parris Island, SC; Danger Zone AGENCY... use these portions of Archers Creek, Ribbon Creek, and the Broad River when the rifle and pistol.... 334.480 to read as follows: Sec. 334.480 Archers Creek, Ribbon Creek, and Broad River; U.S. Marine...

Oyster reef restoration in controlling coastal pollution around India: A viewpoint.

PubMed

Chakraborty, Parthasarathi

2017-02-15

Coastal waters receive large amounts of nutrients and pollutants from different point and nonpoint sources through bays and estuaries. Excess supply of nutrients in coastal waters may have detrimental effects, leading to hypoxia and anoxia from eutrophication. Reduction in concentrations of excess nutrients/pollutants in bays/estuarine system is must for healthy coastal ecosystem functioning. Conservations of bays, estuaries and coastal zones are must for sustainable development in any maritime country. Excellent ability of oyster in removing and controlling the concentrations of nutrients, pollutants, suspended particulate matters from bays and estuarine waters stimulated me to provide a viewpoint on oyster reef restoration in controlling nutrient/heavy metals fluxes and marine coastal pollution around India. Oyster reefs restoration may decrease nutrient and heavy metals fluxes in coastal waters and reduce the intensity of oxygen depletion in the coastal Arabian Sea (seasonal) and Bay of Bengal. However, extensive research is recommended to understand the impact of oyster reef restoration in controlling coastal pollution which is essential for sustainable development around India. Copyright © 2016 Elsevier Ltd. All rights reserved.

A geohydrologic continuum theory for the spatial and temporal evolution of marsh-estuarine ecosystems

NASA Astrophysics Data System (ADS)

Dame, R.; Childers, D.; Koepfler, E.

Using ecosystem development theory and the River Continuum Concept as starting points, we present a new holistic theory to explain the spatial and temporal behaviour of marsh-estuarine ecosystems Along the marine-estuarine-freshwater gradient in response to sea-level rise. In this theory, a geohydrologic continuum represented by tidal channel provides a predictable physical model of how the marsh-estuarine ecosystem adapts until there is a change of state. North Inlet, South Carolina is used as an example of this marsh-estuarine continuum. Mature creeks are at the ocean-estuary interface and are strongly influenced by marine factors. Further into the estuary, less and less mature creeks are encountered which are dominated by smaller scale spatial and temporal controls such as oyster reefs. Immature or ephemeral creeks import both particulate and dissolved materials, while mature creeks export both forms of nutrients. Mid-aged creeks appear to take up particulate materials and release dissolved constituents. Ultimately, the continuum reaches the fresh-saltwater interface where a very young estuarine ecosystem invades a more mature type, under the influence of disturbance. Our new explanation satisfies most criteria for a good theory by being internally consistent to the location specified, generating testable hypothesis, not blindly adapting existing theories, agreeing with known properties of the ecosystem described and by generating new invigorating discussion within the scientific community.

Ostreid herpesvirus in wild oysters from the Huelva coast (SW Spain).

PubMed

López-Sanmartín, M; López-Fernández, J R; Cunha, M E; De la Herrán, R; Navas, J I

2016-08-09

This is the first report of ostreid herpesvirus 1 microvariant (OsHV-1 µVar) infecting natural oyster beds located in Huelva (SW Spain). The virus was detected in 3 oyster species present in the intertidal zone: Crassostrea gigas (Thunberg, 1793), C. angulata (Lamarck, 1819) and, for the first time, in Ostrea stentina Payraudeau, 1826. Oysters were identified by a specific polymerase chain reaction (PCR) and posterior restriction fragment length polymorphism (RFLP) analysis based on cytochrome oxidase I (COI) mitochondrial DNA. Results confirmed that C. angulata still remains the dominant oyster population in SW Spain despite the introduction of C. gigas for cultivation in the late 1970s, and its subsequent naturalization. C. angulata shows a higher haplotype diversity than C. gigas. OsHV-1 virus was detected by PCR with C2/C6 pair primers. Posterior RFLP analyses with the restriction enzyme MfeI were done in order to reveal the OsHV-1 µVar. Detections were confirmed by DNA sequencing, and infections were evidenced by in situ hybridization in C. gigas, C. angulata and O. stentina samples. The prevalence was similar among the 3 oyster species but varied between sampling locations, being higher in areas with greater harvesting activities. OsHV-1 µVar accounted for 93% of all OsHV-1 detected.

33 CFR 334.480 - Archers Creek, Ribbon Creek and Broad River, S.C.; U.S. Marine Corps Recruit Depot rifle and...

Code of Federal Regulations, 2011 CFR

2011-07-01

... Broad River, S.C.; U.S. Marine Corps Recruit Depot rifle and pistol ranges, Parris Island. 334.480... DEFENSE DANGER ZONE AND RESTRICTED AREA REGULATIONS § 334.480 Archers Creek, Ribbon Creek and Broad River... navigation: (1) At the rifle range. Archers Creek between Broad River and Beaufort River and Ribbon Creek...

33 CFR 334.480 - Archers Creek, Ribbon Creek and Broad River, S.C.; U.S. Marine Corps Recruit Depot rifle and...

Code of Federal Regulations, 2010 CFR

2010-07-01

... Broad River, S.C.; U.S. Marine Corps Recruit Depot rifle and pistol ranges, Parris Island. 334.480... DEFENSE DANGER ZONE AND RESTRICTED AREA REGULATIONS § 334.480 Archers Creek, Ribbon Creek and Broad River... navigation: (1) At the rifle range. Archers Creek between Broad River and Beaufort River and Ribbon Creek...

Upper Neogene stratigraphy and tectonics of Death Valley - A review

USGS Publications Warehouse

Knott, J.R.; Sarna-Wojcicki, A. M.; Machette, M.N.; Klinger, R.E.

2005-01-01

New tephrochronologic, soil-stratigraphic and radiometric-dating studies over the last 10 years have generated a robust numerical stratigraphy for Upper Neogene sedimentary deposits throughout Death Valley. Critical to this improved stratigraphy are correlated or radiometrically-dated tephra beds and tuffs that range in age from > 3.58 Ma to < 1.1 ka. These tephra beds and tuffs establish relations among the Upper Pliocene to Middle Pleistocene sedimentary deposits at Furnace Creek basin, Nova basin, Ubehebe-Lake Rogers basin, Copper Canyon, Artists Drive, Kit Fox Hills, and Confidence Hills. New geologic formations have been described in the Confidence Hills and at Mormon Point. This new geochronology also establishes maximum and minimum ages for Quaternary alluvial fans and Lake Manly deposits. Facies associated with the tephra beds show that ???3.3 Ma the Furnace Creek basin was a northwest-southeast-trending lake flanked by alluvial fans. This paleolake extended from the Furnace Creek to Ubehebe. Based on the new stratigraphy, the Death Valley fault system can be divided into four main fault zones: the dextral, Quaternary-age Northern Death Valley fault zone; the dextral, pre-Quaternary Furnace Creek fault zone; the oblique-normal Black Mountains fault zone; and the dextral Southern Death Valley fault zone. Post -3.3 Ma geometric, structural, and kinematic changes in the Black Mountains and Towne Pass fault zones led to the break up of Furnace Creek basin and uplift of the Copper Canyon and Nova basins. Internal kinematics of northern Death Valley are interpreted as either rotation of blocks or normal slip along the northeast-southwest-trending Towne Pass and Tin Mountain fault zones within the Eastern California shear zone. ?? 2005 Elsevier B.V. All rights reserved.

Genome and Transcriptome Analyses Provide Insight into the Euryhaline Adaptation Mechanism of Crassostrea gigas

PubMed Central

Zhang, Linlin; Li, Chunyan; Li, Li; She, Zhicai; Huang, Baoyu; Zhang, Guofan

2013-01-01

Background The Pacific oyster, Crassostrea gigas, has developed special mechanisms to regulate its osmotic balance to adapt to fluctuations of salinities in coastal zones. To understand the oyster’s euryhaline adaptation, we analyzed salt stress effectors metabolism pathways under different salinities (salt 5, 10, 15, 20, 25, 30 and 40 for 7 days) using transcriptome data, physiology experiment and quantitative real-time PCR. Results Transcriptome data uncovered 189, 480, 207 and 80 marker genes for monitoring physiology status of oysters and the environment conditions. Three known salt stress effectors (involving ion channels, aquaporins and free amino acids) were examined. The analysis of ion channels and aquaporins indicated that 7 days long-term salt stress inhibited voltage-gated Na+/K+ channel and aquaporin but increased calcium-activated K+ channel and Ca2+ channel. As the most important category of osmotic stress effector, we analyzed the oyster FAAs metabolism pathways (including taurine, glycine, alanine, beta-alanine, proline and arginine) and explained FAAs functional mechanism for oyster low salinity adaptation. FAAs metabolism key enzyme genes displayed expression differentiation in low salinity adapted individuals comparing with control which further indicated that FAAs played important roles for oyster salinity adaptation. A global metabolic pathway analysis (iPath) of oyster expanded genes displayed a co-expansion of FAAs metabolism in C. gigas compared with seven other species, suggesting oyster’s powerful ability regarding FAAs metabolism, allowing it to adapt to fluctuating salinities, which may be one important mechanism underlying euryhaline adaption in oyster. Additionally, using transcriptome data analysis, we uncovered salt stress transduction networks in C. gigas. Conclusions Our results represented oyster salt stress effectors functional mechanisms under salt stress conditions and explained the expansion of FAAs metabolism pathways as the most important effectors for oyster euryhaline adaptation. This study was the first to explain oyster euryhaline adaptation at a genome-wide scale in C. gigas. PMID:23554902

Characterization of adhesive from oysters: A structural and compositional study

NASA Astrophysics Data System (ADS)

Alberts, Erik

The inability for man-made adhesives to set in wet or humid environments is an ongoing challenging the design of biomedical and marine adhesive materials. However, we see that nature has already overcome this challenge. Mussels, barnacles, oysters and sandcastle worms all have unique mechanisms by which they attach themselves to surfaces. By understanding what evolution has already spent millions of years perfecting, we can design novel adhesive materials inspired by nature's elegant designs. The well-studied mussel is currently the standard for design of marine inspired biomimetic polymers. In the work presented here, we aim to provide new insights into the adhesive produced by the eastern oyster, Crassostrea virginica. Unlike the mussel, which produces thread-like plaques comprised of DOPA containing-protein, the oyster secretes an organic-inorganic hybrid adhesive as it settles and grows onto a surface. This form of adhesion renders the oyster to be permanently fixed in place. Over time, hundreds of thousands of oyster grow and agglomerate to form extensive reef structures. These reefs are not only essential to survival of the oyster, but are also vital to intertidal ecosystems. While the shell of the oyster has been extensively studied, curiously, only a few conflicting insights have been made into the nature of the adhesive and contact zone between shell and substrate, and even lesfs information has been ascertained on organic and inorganic composition. In this work, we provide microscopy and histochemical studies to characterize the structure and composition of the adhesive, using oyster in the adult and juvenile stages of life. Preliminary work on extracting and characterizing organic components through collaborative help with solid-state NMR (SSNMR) and proteomics are also detailed here. We aim to provide a full, comprehensive characterization of oyster adhesive so that in the future, we may apply what we learn to the design of new materials.

Correlation chart of Pennsylvanian rocks in Alabama, Tennessee, Kentucky, Virginia, West Virginia, Ohio, Maryland, and Pennsylvania showing approximate position of coal beds, coal zones, and key stratigraphic units: Chapter D.2 in Coal and petroleum resources in the Appalachian basin: distribution, geologic framework, and geochemical character

USGS Publications Warehouse

Ruppert, Leslie F.; Trippi, Michael H.; Slucher, Ernie R.; Ruppert, Leslie F.; Ryder, Robert T.

2014-01-01

Because of the many names used to identify individual coal beds and coal zones in the historic Appalachian basin coal-mining districts, coal bed designations may differ even more than stratigraphic nomenclature. In eastern Kentucky, northwest of the Pine Mountain thrust fault on the Cumberland overthrust sheet, for example, coal beds or coal zones equivalent to the Lower Elkhorn coal zone (within the Pikeville Formation) are identified also as the Eagle coal zone, Pond Creek coal zone, and Blue Gem coal bed (fig. 1). Southeast of the Pine Mountain thrust fault, yet still in Kentucky, equivalent coals in this same interval are known as the Imboden and Rich Mountain. Moreover, this same interval of coal is identified as the Blue Gem coal in Tennessee, the Imboden coal bed or Campbell Creek or Pond Creek coal zones in Virginia, and the Eagle coal zone in West Virginia.

Tertiary geology and oil-shale resources of the Piceance Creek basin between the Colorado and White Rivers, northwestern Colorado

USGS Publications Warehouse

Donnell, John R.

1961-01-01

The area of the Piceance Creek basin between the Colorado and White Rivers includes approximately 1,600 square miles and is characterized by an extensive plateau that rises 1,000 to more than 4,000 feet above the surrounding lowlands. Relief is greatest in Naval Oil-Shale Reserves Nos. 1 and 3 near the south margin of the area, where the spectacular Roan Cliffs tower above the valley of the Colorado River. The oldest rocks exposed in the mapped area are sandstone, shale, and coal beds of the Mesaverde group of Late Cretaceous age, which crop out along the east margin of the area. Overlying the Mesaverde is an unnamed sequence of dark-colored sandstone and shale, Paleocene in age. The Ohio Creek conglomerate, composed of black and red chert and quartzite pebbles in a white sandstone matrix, is probably the basal unit in the Paleocene sequence. The Wasatch formation of early Eocene age overlies the Paleocene sedimentary rocks. It is composed of brightly colored shale, lenticular beds of sandstone, and a few thin beds of fresh-water limestone. The Kasatch formation interfingers with and is overlain by the Green River formation of middle Eocene age. The Green River formation has been divided into the Douglas Creek, Garden Gulch, Anvil Points, Parachute Creek, and Evacuation Creek members. The basal and uppermost members, the Douglas Creek and Evacuation Creek, respectively, are predominantly sandy units. The two middle members, the Garden Gulch and Parachute Creek, are composed principally of finer clastic rocks. The Anvil Points member is present only on the southeast, east, and northeast margins of the area. It is a nearshore facies composed principally of sandstone and is the equivalent of the Douglas Creek, Garden Gulch, and the lower part of the Parachute Creek members. All of the richer exposed oil-shale beds are found in the Parachute Creek member, which is divided into two oil-shale zones by a series of low-grade oilshale beds. The upper oil-shale zone has several key beds and zones which can be traced throughout most of the mapped area. One of these, the Mahogany ledge or zone, is a group of very rich oil-shale beds at the base of the upper oil-shale zone. Drilling for oil and gas in the northeastern part of the area has revealed rich oil-shale zones in the Garden Gulch member also.Local unconformities within and at the base of the Evacuation Creek member are exposed at several places along Piceance Creek and at one place near the mouth of Yellow Creek; otherwise, the rock sequence is conformable. The mapped area is the major part of a large syncline, modified by numerous smaller structural features. Fractures, probably associated genetically with the minor structural features, are present in the central part of the area. These fractures are high-angle normal faults with small displacement. They occur in pairs with the intervening block downdropped. Two sets of joints are prominent, one trending northwest and the other northeast. The joint systems control the drainage pattern in the south-central part of the area. More than 20,000 feet of sedimentary rocks underlies the area. Many of the formations yield oil or gas in northwestern Colorado, northeastern Utah, and southwestern Wyoming. The Piceance Creek gas field, in which gas occurs in the Douglas Creek member of the Green River formation, is the largest oil or gas field discovered thus far within the area. About 7,000 million barrels of oil is contained in oil shale that yields an average of 45 gallons per ton from a continuous sequence 5 or more feet thick in the Mahogany zone. Oil shale in the Mahogany zone and adjacent beds that yields an average of 30 gallons of oil per ton from a continuous sequence 15 or more feet thick contains about 91,000 million barrels of oil. Similar shale in deeper zones in the northern part of the area, for which detailed estimates have not been prepared, are now known to contain at least an additional 72,000 million barrels of oil. Oil shale in a sequence 15 or more feet thick that yields an average of 25 gallons of oil per ton contains about 154,000 million barrels of oil in the Mahogany zone and adjacent beds; such shale in deeper zones in the northern part of the area probably contains at least an additional 157,000 million barrels of oil, although detailed estimates were not made. Oil shale in a sequence greater than 15 feet thick that yields an average of 15 gallons of oil per ton contains more than 900,000 million barrels of oil. These estimates of the oil content of the deposit do not take into account any loss in mining or processing of the shale.

Effects of temperature and cadmium exposure on the mitochondria of oysters (Crassostrea virginica) exposed to hypoxia and subsequent reoxygenation.

PubMed

Ivanina, Anna V; Kurochkin, Ilya O; Leamy, Larry; Sokolova, Inna M

2012-09-15

Intertidal bivalves are commonly exposed to multiple stressors including periodic hypoxia, temperature fluctuations and pollution, which can strongly affect energy metabolism. We used top-down control and elasticity analyses to determine the interactive effects of intermittent hypoxia, cadmium (Cd) exposure and acute temperature stress on mitochondria of the eastern oyster Crassostrea virginica. Oysters were acclimated at 20°C for 30 days in the absence or presence of 50 μg l(-1) Cd and then subjected to a long-term hypoxia (6 days at <0.5% O(2) in seawater) followed by normoxic recovery. Mitochondrial function was assessed at the acclimation temperature (20°C), or at elevated temperature (30°C) mimicking acute temperature stress in the intertidal zone. In the absence of Cd or temperature stress, mitochondria of oysters showed high resilience to transient hypoxia. In control oysters at 20°C, hypoxia/reoxygenation induced elevated flux capacity of all three studied mitochondrial subsystems (substrate oxidation, phosphorylation and proton leak) and resulted in a mild depolarization of resting mitochondria. Elevated proton conductance and enhanced capacity of phosphorylation and substrate oxidation subsystems may confer resistance to hypoxia/reoxygenation stress in oyster mitochondria by alleviating production of reactive oxygen species and maintaining high aerobic capacity and ATP synthesis rates during recovery. Exposure to environmental stressors such as Cd and elevated temperatures abolished the putative adaptive responses of the substrate oxidation and phosphorylation subsystems, and strongly enhanced proton leak in mitochondria of oysters subjected to hypoxia/reoxygenation stress. Our findings suggest that Cd exposure and acute temperature stress may lead to the loss of mitochondrial resistance to hypoxia and reoxygenation and thus potentially affect the ability of oysters to survive periodic oxygen deprivation in coastal and estuarine habitats.

Predicting Unsaturated Zone Nitrogen Mass Balances in Agricultural Settings of the United States

USDA-ARS?s Scientific Manuscript database

Unsaturated zone N fate and transport were evaluated at four sites to identify the predominant pathways of N cycling: an almond orchard and cornfield in the lower Merced River study basin, California (CA); and corn-soybean rotations in study basins at Maple Creek, Nebraska (NE) and at Morgan Creek, ...

Carolyn’s Crown/Shafer Creek Research Natural Area: guidebook supplement 28.

Treesearch

Reid. Schuller

2003-01-01

This guidebook describes the Carolyn's Crown/Shafer Creek Research Natural Area, a 323-ha (798-ac) tract of coniferous forest containing stands of 600- to 900-year-old old-growth Douglas-fir along the transition between the western hemlock zone and the silver fir zone in the Cascade Range in western Oregon.

75 FR 26157 - Safety Zone; Reedville July 4th Celebration, Cockrell's Creek, Reedville, VA

Federal Register 2010, 2011, 2012, 2013, 2014

2010-05-11

...-AA00 Safety Zone; Reedville July 4th Celebration, Cockrell's Creek, Reedville, VA AGENCY: Coast Guard... Reedville July 4th Celebration event. This action is intended to restrict vessel traffic movement on... established in the interest of public safety during the Reedville July 4th Celebration event and will be...

33 CFR 334.500 - St. Johns River, Atlantic Ocean, Sherman Creek; restricted areas and danger zone, Naval Station...

Code of Federal Regulations, 2010 CFR

2010-07-01

... 33 Navigation and Navigable Waters 3 2010-07-01 2010-07-01 false St. Johns River, Atlantic Ocean... AND RESTRICTED AREA REGULATIONS § 334.500 St. Johns River, Atlantic Ocean, Sherman Creek; restricted areas and danger zone, Naval Station Mayport, Florida. (a) The areas. (1) The St. Johns River restricted...

History of late Holocene earthquakes at the Willow Creek site on the Nephi segment, Wasatch fault zone, Utah

USGS Publications Warehouse

Crone, Anthony J.; Personius, Stephen F.; Duross, Christopher; Machette, Michael N.; Mahan, Shannon

2014-01-01

This 43-page report presents new data from the Willow Creek site that provides well-defined and narrow bounds on the times of the three youngest earthquakes on the southern strand of the Nephi segment, Wasatch Fault zone, and refines the time of the youngest earthquake to about 200 years ago. This is the youngest surface rupture on the entire Wasatch fault zone, which occurred about a century or less before European settles arrived in Utah. Two trenches at the Willow Creek site exposed three scarp-derived colluvial wedges that are evidence of three paleoearthquakes. OxCal modeling of ages from Willow Creek indicate that paleoearthquake WC1 occurred at 0.2 ± 0.1 ka, WC2 occurred at 1.2 ± 0.1 ka, and WC3 occurred at 1.9 ± 0.6 ka. Stratigraphic constraints on the time of paleoearthquake WC4 are extremely poor, so OxCal modeling only yields a broadly constrained age of 4.7 ± 1.8 ka. Results from the Willow Creek site significantly refine the times of late Holocene earthquakes on the Southern strand of the Nephi segment, and this result, when combined with a reanalysis of the stratigraphic and chronologic information from previous investigations at North Creek and Red Canyon, yield a stronger basis of correlating individual earthquakes between all three sites.

Colloid formation and metal transport through two mixing zones affected by acid mine drainage near Silverton, Colorado

USGS Publications Warehouse

Schemel, L.E.; Kimball, B.A.; Bencala, K.E.

2000-01-01

Stream discharges and concentrations of dissolved and colloidal metals (Al, Ca, Cu, Fe, Mg, Mn, Pb, and Zn), SO4, and dissolved silica were measured to identify chemical transformations and determine mass transports through two mixing zones in the Animas River that receive the inflows from Cement and Mineral Creeks. The creeks were the dominant sources of Al, Cu, Fe, and Pb, whereas the upstream Animas River supplied about half of the Zn. With the exception of Fe, which was present in dissolved and colloidal forms, the metals were dissolved in the acidic, high-SO4 waters of Cement Creek (pH 3.8). Mixing of Cement Creek with the Animas River increased pH to near-neutral values and transformed Al and some additional Fe into colloids which also contained Cu and Pb. Aluminium and Fe colloids had already formed in the mildly acidic conditions in Mineral Creek (pH 6.6) upstream of the confluence with the Animas River. Colloidal Fe continued to form downstream of both mixing zones. The Fe- and Al-rich colloids were important for transport of Cu, Pb, and Zn, which appeared to have sorbed to them. Partitioning of Zn between dissolved and colloidal phases was dependent on pH and colloid concentration. Mass balances showed conservative transports for Ca, Mg, Mn, SO4, and dissolved silica through the two mixing zones and small losses (< 10%) of colloidal Al, Fe and Zn from the water column.

Survivorship and growth of Fucus gardneri after transplant to an acid mine drainage-polluted area.

PubMed

Marsden, A Dale; DeWreede, Robert E; Levings, Colin D

2003-01-01

Acid mine drainage (AMD) from an abandoned copper mine at Britannia Beach, British Columbia, Canada, enters the marine environment through Britannia Creek. The surrounding intertidal zone is devoid of rockweed, Fucus gardneri Silva, a seaweed that dominates nearby shores. Rockweed plants were transplanted to the intertidal zone near Britannia Creek and monitored for changes in percent cover, survivorship, growth rate and Cu content. Autumn and winter transplants to within 100 m of Britannia Creek resulted in negative growth rates and high mortality within 57 days of exposure to AMD, with Cu levels in rockweed surpassing 2,300 ppm in dry tissue. Summer transplants to sites 300-700 m from Britannia Creek showed no consistent differences between AMD-exposed rockweed and control plants, possibly because the plants were stressed by desiccation. The results are consistent with ecological effects observed in other studies, and provide strong evidence for the role of AMD in excluding rockweed from the shores near Britannia Creek.

San Andreas fault geometry at Desert Hot Springs, California, and its effects on earthquake hazards and groundwater

USGS Publications Warehouse

Catchings, R.D.; Rymer, M.J.; Goldman, M.R.; Gandhok, G.

2009-01-01

The Mission Creek and Banning faults are two of the principal strands of the San Andreas fault zone in the northern Coachella Valley of southern California. Structural characteristics of the faults affect both regional earthquake hazards and local groundwater resources. We use seismic, gravity, and geological data to characterize the San Andreas fault zone in the vicinity of Desert Hot Springs. Seismic images of the upper 500 m of the Mission Creek fault at Desert Hot Springs show multiple fault strands distributed over a 500 m wide zone, with concentrated faulting within a central 200 m wide area of the fault zone. High-velocity (up to 5000 m=sec) rocks on the northeast side of the fault are juxtaposed against a low-velocity (6.0) earthquakes in the area (in 1948 and 1986) occurred at or near the depths (~10 to 12 km) of the merged (San Andreas) fault. Large-magnitude earthquakes that nucleate at or below the merged fault will likely generate strong shaking from guided waves along both fault zones and from amplified seismic waves in the low-velocity basin between the two fault zones. The Mission Creek fault zone is a groundwater barrier with the top of the water table varying by 60 m in depth and the aquifer varying by about 50 m in thickness across a 200 m wide zone of concentrated faulting.

Hydrologic data for urban studies in the Austin, Texas, metropolitan area, 1979

USGS Publications Warehouse

Slade, R.M.; Dorsey, M.E.; Gordon, J.D.; Mitchell, R.N.; Gaylord, J.L.

1981-01-01

This report contains rainfall and runoff data collected during the 1979 water year for the Austin, Texas, metropolitan area. In 1975, the program was expanded to include the collection of water-quality data. In 1978, the program was expanded to include a groundwater resources study of the south Austin metropolitan area in the Balcones fault zone. The information will be useful in determining the extent to which progressive urbanization will affect the yeild and mode of occurrence of storm runoff. The major streams in the study area are the Colorado River, Onion Creek, Barton Creek, Walnut Creek, Bull Creek, Boggy Creek, Shoal Creek, Williamson Creek, Slaughter Creek, Bear Creek, and Waller Creek. Detailed rainfall-runoff computations are presented for eight storm periods during the 1979 water year. Water-quality data for sites in the Austin metropolitan area are also given in this report. (USGS)

33 CFR 334.280 - James River between the entrance to Skiffes Creek and Mulberry Point, Va.; army training and...

Code of Federal Regulations, 2010 CFR

2010-07-01

... to Skiffes Creek and Mulberry Point, Va.; army training and small craft testing area. 334.280 Section... DEFENSE DANGER ZONE AND RESTRICTED AREA REGULATIONS § 334.280 James River between the entrance to Skiffes Creek and Mulberry Point, Va.; army training and small craft testing area. (a) The restricted area...

A norepinephrine-responsive miRNA directly promotes CgHSP90AA1 expression in oyster haemocytes during desiccation.

PubMed

Chen, Hao; Xin, Lusheng; Song, Xiaorui; Wang, Lin; Wang, Weilin; Liu, Zhaoqun; Zhang, Huan; Wang, Lingling; Zhou, Zhi; Qiu, Limei; Song, Linsheng

2017-05-01

Oyster Crassostrea gigas is one model mollusc inhabiting in the intertidal zone and is frequently stressed by desiccation. The adaptation mechanism of oyster to environmental stress involves multiple levels, and miRNA is one of the most important regulators in post-transcriptional level. In the present study, an oyster norepinephrine-responsive miRNA cgi-miR-365 was proved to contribute to the host adaptation against desiccation by directly promoting the expression of CgHSP90AA1. Briefly, a significant increase of cgi-miR-365 was observed from the first day after aerial exposure and the up-regulation was vigorously repressed when oysters were injected with adrenoceptors antagonists. A total of 15 genes involved in biological regulation, metabolic process and response to stimulus were predicted to be modulated by cgi-miR-365. Among these genes, CgHSP90AA1 was up-regulated significantly during desiccation and could be down-regulated after simultaneous injection of adrenoceptors antagonists. The interaction between cgi-miR-365 and CgHSP90AA1 was subsequently verified in vitro, and a significant promotion of CgHSP90AA1 transcripts was observed after overexpressing cgi-miR-365 in either in vitro luciferase reporter assay or primarily cultured haemocytes. Meanwhile, CgHSP90AA1 transcripts decreased in vivo when cgi-miR-365 was repressed by its inhibitor during desiccation. Collectively, it was suggested that cgi-miR-365 could be induced by norepinephrine during desiccation and promote CgHSP90AA1 expression directly after binding to its 3'-UTR, which would provide new evidence in miRNA-mediated adaptation mechanism in oysters against intertidal stress. Copyright © 2017 Elsevier Ltd. All rights reserved.

Abundance of non-native crabs in intertidal habitats of New England with natural and artificial structure

PubMed Central

Lovely, Christina M.; Judge, Michael L.

2015-01-01

Marine habitats containing complex physical structure (e.g., crevices) can provide shelter from predation for benthic invertebrates. To examine effects of natural and artificial structure on the abundance of intertidal juvenile crabs, 2 experiments were conducted in Kingston Bay, Massachusetts, USA, from July to September, 2012. In the first experiment, structure was manipulated in a two-factor design that was placed in the high intertidal for 3 one-week periods to test for both substrate type (sand vs. rock) and the presence or absence of artificial structure (mesh grow-out bags used in aquaculture, ∼0.5 m2 with 62 mm2 mesh openings). The Asian shore crab, Hemigrapsus sanguineus, and small individuals of the green crab, Carcinus maenas, were observed only in the treatments of rocks and mesh bag plus rocks. Most green crabs were small (<6 mm in carapace width) whereas H. sanguineus occurred in a wide range of sizes. In the second experiment, 3 levels of oyster-shell treatments were established using grow-out bags placed on a muddy sand substrate in the low intertidal zone: mesh grow-out bags without shells, grow-out bags with oyster shells, and grow-out bags containing live oysters. Replicate bags were deployed weekly for 7 weeks in a randomized complete block design. All crabs collected in the bags were juvenile C. maenas (1–15 mm carapace width), and numbers of crabs differed 6-fold among treatments, with most crabs present in bags with live oysters (29.5 ± 10.6 m−2 [mean ± S.D.]) and fewest in bags without shells (4.9 ± 3.7 m−2). Both C. maenas and H. sanguineus occurred in habitats with natural structure (cobble rocks). The attraction of juvenile C. maenas to artificial structure consisting of plastic mesh bags containing both oyster shells and living oysters could potentially impact oyster aquaculture operations. PMID:26401456

Bivalve-specific gene expansion in the pearl oyster genome: implications of adaptation to a sessile lifestyle.

PubMed

Takeuchi, Takeshi; Koyanagi, Ryo; Gyoja, Fuki; Kanda, Miyuki; Hisata, Kanako; Fujie, Manabu; Goto, Hiroki; Yamasaki, Shinichi; Nagai, Kiyohito; Morino, Yoshiaki; Miyamoto, Hiroshi; Endo, Kazuyoshi; Endo, Hirotoshi; Nagasawa, Hiromichi; Kinoshita, Shigeharu; Asakawa, Shuichi; Watabe, Shugo; Satoh, Noriyuki; Kawashima, Takeshi

2016-01-01

Bivalve molluscs have flourished in marine environments, and many species constitute important aquatic resources. Recently, whole genome sequences from two bivalves, the pearl oyster, Pinctada fucata, and the Pacific oyster, Crassostrea gigas, have been decoded, making it possible to compare genomic sequences among molluscs, and to explore general and lineage-specific genetic features and trends in bivalves. In order to improve the quality of sequence data for these purposes, we have updated the entire P. fucata genome assembly. We present a new genome assembly of the pearl oyster, Pinctada fucata (version 2.0). To update the assembly, we conducted additional sequencing, obtaining accumulated sequence data amounting to 193× the P. fucata genome. Sequence redundancy in contigs that was caused by heterozygosity was removed in silico, which significantly improved subsequent scaffolding. Gene model version 2.0 was generated with the aid of manual gene annotations supplied by the P. fucata research community. Comparison of mollusc and other bilaterian genomes shows that gene arrangements of Hox, ParaHox, and Wnt clusters in the P. fucata genome are similar to those of other molluscs. Like the Pacific oyster, P. fucata possesses many genes involved in environmental responses and in immune defense. Phylogenetic analyses of heat shock protein70 and C1q domain-containing protein families indicate that extensive expansion of genes occurred independently in each lineage. Several gene duplication events prior to the split between the pearl oyster and the Pacific oyster are also evident. In addition, a number of tandem duplications of genes that encode shell matrix proteins are also well characterized in the P. fucata genome. Both the Pinctada and Crassostrea lineages have expanded specific gene families in a lineage-specific manner. Frequent duplication of genes responsible for shell formation in the P. fucata genome explains the diversity of mollusc shell structures. These duplications reveal dynamic genome evolution to forge the complex physiology that enables bivalves to employ a sessile lifestyle in the intertidal zone.

Abundance of non-native crabs in intertidal habitats of New England with natural and artificial structure.

PubMed

Lovely, Christina M; O'Connor, Nancy J; Judge, Michael L

2015-01-01

Marine habitats containing complex physical structure (e.g., crevices) can provide shelter from predation for benthic invertebrates. To examine effects of natural and artificial structure on the abundance of intertidal juvenile crabs, 2 experiments were conducted in Kingston Bay, Massachusetts, USA, from July to September, 2012. In the first experiment, structure was manipulated in a two-factor design that was placed in the high intertidal for 3 one-week periods to test for both substrate type (sand vs. rock) and the presence or absence of artificial structure (mesh grow-out bags used in aquaculture, ∼0.5 m(2) with 62 mm(2) mesh openings). The Asian shore crab, Hemigrapsus sanguineus, and small individuals of the green crab, Carcinus maenas, were observed only in the treatments of rocks and mesh bag plus rocks. Most green crabs were small (<6 mm in carapace width) whereas H. sanguineus occurred in a wide range of sizes. In the second experiment, 3 levels of oyster-shell treatments were established using grow-out bags placed on a muddy sand substrate in the low intertidal zone: mesh grow-out bags without shells, grow-out bags with oyster shells, and grow-out bags containing live oysters. Replicate bags were deployed weekly for 7 weeks in a randomized complete block design. All crabs collected in the bags were juvenile C. maenas (1-15 mm carapace width), and numbers of crabs differed 6-fold among treatments, with most crabs present in bags with live oysters (29.5 ± 10.6 m(-2) [mean ± S.D.]) and fewest in bags without shells (4.9 ± 3.7 m(-2)). Both C. maenas and H. sanguineus occurred in habitats with natural structure (cobble rocks). The attraction of juvenile C. maenas to artificial structure consisting of plastic mesh bags containing both oyster shells and living oysters could potentially impact oyster aquaculture operations.

33 CFR 165.173 - Safety Zones for annually recurring marine events held in Coast Guard Southeastern New England...

Code of Federal Regulations, 2013 CFR

2013-07-01

....0JUNE 6.1Oak Bluffs Summer Solstice • Event Type: Fireworks Display. • Date: One night on the 3rd or 4th... Zone Dimension: Approximately 1000 yards long by 1000 yards wide. 7.0JULY 7.1Marion 4th of July... barge. 7.2Oyster Harbors July 4th Festival • Event Type: Fireworks Display. • Date: One night between...

33 CFR 165.173 - Safety Zones for annually recurring marine events held in Coast Guard Southeastern New England...

Code of Federal Regulations, 2012 CFR

2012-07-01

....0JUNE 6.1Oak Bluffs Summer Solstice • Event Type: Fireworks Display. • Date: One night on the 3rd or 4th... Zone Dimension: Approximately 1000 yards long by 1000 yards wide. 7.0JULY 7.1Marion 4th of July... barge. 7.2Oyster Harbors July 4th Festival • Event Type: Fireworks Display. • Date: One night between...

Environmental Controls of Oyster-Pathogenic Vibrio spp. in Oregon Estuaries and a Shellfish Hatchery

PubMed Central

Crump, Byron C.; Häse, Claudia C.; White, Angelicque E.

2018-01-01

ABSTRACT Vibrio spp. have been a persistent concern for coastal bivalve hatcheries, which are vulnerable to environmental pathogens in the seawater used for rearing larvae, yet the biogeochemical drivers of oyster-pathogenic Vibrio spp. in their planktonic state are poorly understood. Here, we present data tracking oyster-pathogenic Vibrio bacteria in Netarts Bay and Yaquina Bay in Oregon, USA, as well as in adjacent coastal waters and a local shellfish hatchery, through the 2015 upwelling season. Vibrio populations were quantified using a culture-independent approach of high-throughput Vibrio-specific 16S rRNA gene sequencing paired with droplet digital PCR, and abundances were analyzed in the context of local biogeochemistry. The most abundant putative pathogen in our samples was Vibrio coralliilyticus. Environmental concentrations of total Vibrio spp. and V. coralliilyticus were highest in Netarts Bay sediment samples and higher in seawater from Netarts Bay than from nearshore coastal waters or Yaquina Bay. In Netarts Bay, the highest V. coralliilyticus concentrations were observed during low tide, and abundances increased throughout the summer. We hypothesize that the warm shallow waters in estuarine mudflats facilitate the local growth of the V. coralliilyticus pathogen. Samples from larval oyster tanks in Whiskey Creek Shellfish Hatchery, which uses seawater pumped directly from Netarts Bay, contained significantly lower total Vibrio species concentrations, but roughly similar V. coralliilyticus concentrations, than did the bay water, resulting in a 30-fold increase in the relative abundance of the V. coralliilyticus pathogen in hatchery tanks. This suggests that the V. coralliilyticus pathogen is able to grow or persist under hatchery conditions. IMPORTANCE It has been argued that oyster-pathogenic Vibrio spp. have contributed to recent mortality events in U.S. shellfish hatcheries (R. A. Elston, H. Hasegawa, K. L. Humphrey, I. K. Polyak, and C. Häse, Dis Aquat Organ 82:119–134, 2008, https://doi.org/10.3354/dao01982); however, these events are often sporadic and unpredictable. The success of hatcheries is critically linked to the chemical and biological composition of inflowing seawater resources; thus, it is pertinent to understand the biogeochemical drivers of oyster-pathogenic Vibrio spp. in their planktonic state. Here, we show that Netarts Bay, the location of a local hatchery, is enriched in oyster-pathogenic V. coralliilyticus compared to coastal seawater, and we hypothesize that conditions in tidal flats promote the local growth of this pathogen. Furthermore, V. coralliilyticus appears to persist in seawater pumped into the local hatchery. These results improve our understanding of the ecology and environmental controls of the V. coralliilyticus pathogen and could be used to improve future aquaculture efforts, as multiple stressors impact hatchery success. PMID:29475863

Environmental Controls of Oyster-Pathogenic Vibrio spp. in Oregon Estuaries and a Shellfish Hatchery.

PubMed

Gradoville, Mary R; Crump, Byron C; Häse, Claudia C; White, Angelicque E

2018-05-01

Vibrio spp. have been a persistent concern for coastal bivalve hatcheries, which are vulnerable to environmental pathogens in the seawater used for rearing larvae, yet the biogeochemical drivers of oyster-pathogenic Vibrio spp. in their planktonic state are poorly understood. Here, we present data tracking oyster-pathogenic Vibrio bacteria in Netarts Bay and Yaquina Bay in Oregon, USA, as well as in adjacent coastal waters and a local shellfish hatchery, through the 2015 upwelling season. Vibrio populations were quantified using a culture-independent approach of high-throughput Vibrio- specific 16S rRNA gene sequencing paired with droplet digital PCR, and abundances were analyzed in the context of local biogeochemistry. The most abundant putative pathogen in our samples was Vibrio coralliilyticus Environmental concentrations of total Vibrio spp. and V. coralliilyticus were highest in Netarts Bay sediment samples and higher in seawater from Netarts Bay than from nearshore coastal waters or Yaquina Bay. In Netarts Bay, the highest V. coralliilyticus concentrations were observed during low tide, and abundances increased throughout the summer. We hypothesize that the warm shallow waters in estuarine mudflats facilitate the local growth of the V. coralliilyticus pathogen. Samples from larval oyster tanks in Whiskey Creek Shellfish Hatchery, which uses seawater pumped directly from Netarts Bay, contained significantly lower total Vibrio species concentrations, but roughly similar V. coralliilyticus concentrations, than did the bay water, resulting in a 30-fold increase in the relative abundance of the V. coralliilyticus pathogen in hatchery tanks. This suggests that the V. coralliilyticus pathogen is able to grow or persist under hatchery conditions. IMPORTANCE It has been argued that oyster-pathogenic Vibrio spp. have contributed to recent mortality events in U.S. shellfish hatcheries (R. A. Elston, H. Hasegawa, K. L. Humphrey, I. K. Polyak, and C. Häse, Dis Aquat Organ 82:119-134, 2008, https://doi.org/10.3354/dao01982); however, these events are often sporadic and unpredictable. The success of hatcheries is critically linked to the chemical and biological composition of inflowing seawater resources; thus, it is pertinent to understand the biogeochemical drivers of oyster-pathogenic Vibrio spp. in their planktonic state. Here, we show that Netarts Bay, the location of a local hatchery, is enriched in oyster-pathogenic V. coralliilyticus compared to coastal seawater, and we hypothesize that conditions in tidal flats promote the local growth of this pathogen. Furthermore, V. coralliilyticus appears to persist in seawater pumped into the local hatchery. These results improve our understanding of the ecology and environmental controls of the V. coralliilyticus pathogen and could be used to improve future aquaculture efforts, as multiple stressors impact hatchery success. Copyright © 2018 Gradoville et al.

Geothermal hydrology of Valles Caldera and the southwestern Jemez Mountains, New Mexico

USGS Publications Warehouse

Trainer, Frank W.; Rogers, Robert J.; Sorey, M.L.

2000-01-01

The Jemez Mountains in north-central New Mexico are volcanic in origin and have a large central caldera known as Valles Caldera. The mountains contain the Valles geothermal system, which was investigated during 1970-82 as a source of geothermal energy. This report describes the geothermal hydrology of the Jemez Mountains and presents results of an earlier 1972-75 U.S. Geological Survey study of the area in light of more recent information. Several distinct types of thermal and nonthermal ground water are recognized in the Jemez Mountains. Two types of near-surface thermal water are in the caldera: thermal meteoric water and acid sulfate water. The principal reservoir of geothermal fluids is at depth under the central and western parts of the caldera. Nonthermal ground water in Valles Caldera occurs in diverse perched aquifers and deeper valley-fill aquifers. The geothermal reservoir is recharged by meteorically derived water that moves downward from the aquifers in the caldera fill to depths of 6,500 feet or more and at temperatures reaching about 330 degrees Celsius. The heated geothermal water rises convectively to depths of 2,000 feet or less and mixes with other ground water as it flows away from the geothermal reservoir. A vapor zone containing steam, carbon dioxide, and other gases exists above parts of the liquid-dominated geothermal zone. Two subsystems are generally recognized within the larger geothermal system: the Redondo Creek subsystem and the Sulphur Creek subsystem. The permeability in the Redondo Creek subsystem is controlled by stratigraphy and fault-related structures. Most of the permeability is in the high-angle, normal faults and associated fractures that form the Redondo Creek Graben. Faults and related fractures control the flow of thermal fluids in the subsystem, which is bounded by high-angle faults. The Redondo Creek subsystem has been more extensively studied than other parts of the system. The Sulphur Springs subsystem is not as well defined. The upper vapor-dominated zone in the Sulphur Creek subsystem is separated from the liquid-dominated zone by about 800 feet of sealed caldera-fill rock. Acid springs occur at the top of the vapor zone in the Sulphur Springs area. Some more highly permeable zones within the geothermal reservoir are interconnected, but the lack of interference effects among some wells during production tests suggests effective hydraulic separation along some subsystem boundaries. Chemical and thermal evidence suggests that the Sulphur Springs subsystem may be isolated from the Redondo Creek subsystem and each may have its own zone of upflow and lateral outflow. The area of the entire geothermal reservoir is estimated to be about 12 to 15 square miles; its western limit generally is thought to be at the ring-fracture zone of the caldera. The top of the reservoir is generally considered to be the bottom of a small- permeability 'caprock' that is about 2,000 to 3,000 feet below land surface. Estimated thicknesses to the bottom of the reservoir range from 2,000 to 6,000 feet. Reservoir temperatures measured in exploration wells range from 225 degrees Celsius just below the caprock to about 330 degrees Celsius in deeper drill holes. Pressures measured in exploration wells in the Redondo Creek area ranged from 450 to 1,850 pounds per square inch. Steam-producing zones have been encountered above the liquid- dominated zones in wells, but the extent of steam zones is not well defined. The reservoir contains a near-neutral, chloride-type water containing about 7,000 milligrams per liter dissolved solids. No thermal springs in the caldera have geochemical characteristics similar to those of the geothermal reservoir fluids sampled in wells. Oxygen-18 and deuterium isotope concentrations of geothermal reservoir fluid indicate a meteoric origin. The moat valleys in

Multiple injected and natural conservative tracers quantify mixing in a stream confluence affected by acid mine drainage near Silverton, Colorado

NASA Astrophysics Data System (ADS)

Schemel, Laurence E.; Cox, Marisa H.; Runkel, Robert L.; Kimball, Briant A.

2006-08-01

The acidic discharge from Cement Creek, containing elevated concentrations of dissolved metals and sulphate, mixed with the circumneutral-pH Animas River over a several hundred metre reach (mixing zone) near Silverton, CO, during this study. Differences in concentrations of Ca, Mg, Si, Sr, and SO42- between the creek and the river were sufficiently large for these analytes to be used as natural tracers in the mixing zone. In addition, a sodium chloride (NaCl) tracer was injected into Cement Creek, which provided a Cl- reference tracer in the mixing zone. Conservative transport of the dissolved metals and sulphate through the mixing zone was verified by mass balances and by linear mixing plots relative to the injected reference tracer. At each of seven sites in the mixing zone, five samples were collected at evenly spaced increments of the observed across-channel gradients, as determined by specific conductance. This created sets of samples that adequately covered the ranges of mixtures (mixing ratios, in terms of the fraction of Animas River water, %AR). Concentratis measured in each mixing zone sample and in the upstream Animas River and Cement Creek were used to compute %AR for the reference and natural tracers. Values of %AR from natural tracers generally showed good agreement with values from the reference tracer, but variability in discharge and end-member concentrations and analytical errors contributed to unexpected outlier values for both injected and natural tracers. The median value (MV) %AR (calculated from all of the tracers) reduced scatter in the mixing plots for the dissolved metals, indicating that the MV estimate reduced the effects of various potential errors that could affect any tracer.

Late Cretaceous base level lowering in Campanian and Maastrichtian depositional sequences, Kure Beach, North Carolina

USGS Publications Warehouse

Harris, W.B.; ,

2006-01-01

Campanian through Maastrichtian mixed carbonate and siliciclastic sediments in a 422 m continuous core drilled at Kure Beach, NC provide a record of sea-level change. Based on lithology and stratigraphy, depositional sequences are defined, and calcareous nannofossil zones and 87Sr/86Sr ratios and corresponding ages using the LOWESS Table determined. Campanian and Maastrichtian sediments comprise six depositional sequences. The oldest is Tar Heel 1 and contains calcareous nannofossils that indicate assignment to the upper part of Zones CC18a, CC18c and the lower part of CC19. 87Sr/86 Sr ratios indicate ages from 83.2 to 80.0 Ma or lower Campanian. Tar Heel II contains calcareous nannofossils that indicate assignment to the upper part of Zone CC 19 and CC20. 87Sr/86Sr ratios indicate ages from 78.0 to 76.3 Ma or middle Campanian. Donoho Creek I and II are thin and contain calcareous nannofossils referable to upper Zone CC21 and Zone CC22, and to CC23, respectively. The top of Donoho Creek II marks the Campanian-Maastrichtian boundary. Donoho Creek I 87Sr/86Sr ratios cluster into two groups, and provide ages from 78.0 to 76.2 Ma and 73.7 to 72.3 Ma, respectively. 87Sr/86Sr ratios in Donoho Creek II indicate ages from 71.4 to 69.6 Ma. Two Maastrichtian sequences are present; the lowermost Peedee I contains calcareous nannofossils that place it in Zones CC25a and CC25b. 87Sr/86Sr r ratios indicate an age from 69.3 to 66.9 Ma or late Maastrichtian. Peedee II is assigned to calcareous nannofossil Zone CC26a. 87Sr/86Sr ratios indicate ages from 66.4 to 65.2 Ma or late Maastrichtian. The four Campanian sequences correlate to three depositional sequences in New Jersey; the sequence boundary between upper Campanian Donoho Creek I and Donoho Creek II is not recognized in New Jersey. This boundary is interpreted to result from Gulf Stream impingement and subsequent erosion on the outer shelf. The two Maastrichtian sequences recognized in the Kure Beach core correlate to the two identified Maastrichtian sequences in New Jersey. These data support base-level lowering of sea-level during the Campanian-Maastrichtian, and suggest that the western margin of the North Atlantic may contain one of the best Late Cretaceous records of sea-level change.

33 CFR 334.230 - Potomac River.

Code of Federal Regulations, 2010 CFR

2010-07-01

... 334.230 Navigation and Navigable Waters CORPS OF ENGINEERS, DEPARTMENT OF THE ARMY, DEPARTMENT OF DEFENSE DANGER ZONE AND RESTRICTED AREA REGULATIONS § 334.230 Potomac River. (a) Naval Surface Weapons... except Sundays. (ii) When firing is in progress, no person, or fishing or oystering vessels shall operate...

Sociocultural Factors Review for the Warm Springs Dam - Lake Sonoma Project Candidate/Critical Habitat Zone Evaluation,

DTIC Science & Technology

1983-06-01

roads which fol- lowed them, were also used by the Cloverdale Porno to gain access to fish- ing sites on Dry Creek, Galloway Creek, and Rail Creek and... Porno , as well as other groups from as far away as Lake County, to reach Annapolis, Stewart’s Point, and Gualala. From Cloverdale, the trail followed...time, the Cloverdale and Dry Creek Porno traveled by buckboard and later by automobile to the coast along a trail which generally follows the route of

Modeling Raw Sewage Leakage and Transport in the Unsaturated Zone of Carbonate Aquifer Using Carbamazepine as an Indicator

NASA Astrophysics Data System (ADS)

Yakirevich, A.; Kuznetsov, M.; Livshitz, Y.; Gasser, G.; Pankratov, I.; Lev, O.; Adar, E.; Dvory, N. Z.

2016-12-01

Fast contamination of groundwater in karstic aquifers can be caused due to leaky sewers, for example, or overflow from sewer networks. When flowing through a karst system, wastewater has the potential to reach the aquifer in a relatively short time. The Western Mountain Aquifer (Yarkon-Taninim) of Israel is one of the country's major water resources. During late winter 2013, maintenance actions were performed on a central sewage pipe that caused raw sewage to leak into the creek located in the study area. The subsequent infiltration of sewage through the thick ( 100 m) fractured/karst unsaturated zone led to a sharp increase in contaminant concentrations in the groundwater, which was monitored in a well located 29 meters from the center of the creek. Carbamazepine (CBZ) was used as an indicator for the presence of untreated raw sewage and its quantification in groundwater. The ultimate research goal was to develop a mathematical model for quantifying flow and contaminant transport processes in the fractured-porous unsaturated zone and karstified groundwater system. A quasi-3D dual permeability numerical model, representing the 'vadose zone - aquifer' system, was developed by a series of 1D equations solved in variably-saturated zone and by 3D-saturated flow and transport equation in groundwater. The 1D and 3D equations were coupled at the moving phreatic surface. The model was calibrated and applied to a simulated water flow scenario and CBZ transport during and after the observed sewage leakage event. The results of simulation showed that after the leakage stopped, significant amounts of CBZ were retained in the porous matrix of the unsaturated zone below the creek. Water redistribution and slow recharge during the dry summer season contributed to elevated CBZ concentrations in the groundwater in the vicinity of the creek and tens of meters downstream. The resumption of autumn rains enhanced flushing of CBZ from the unsaturated zone and led to an increase in groundwater concentrations.

Large Aquatic Ecosystem Restoration Monitoring for Decision Makers: Monitoring to Target and Evaluate Success of Ecosystem Restoration

EPA Science Inventory

Monitoring ecosystem restoration at various scales in LAEs can be challenging, frustrating and rewarding. Some of the major ecosystem restoration monitoring occurring in LAEs include: seagrass expansion/contraction; dead zone sizes; oyster reefs; sea turtle nesting; toxic and nu...

Sources of baseflow for the Minnehaha Creek Watershed, Minnesota, US

NASA Astrophysics Data System (ADS)

Nieber, J. L.; Moore, T. L.; Gulliver, J. S.; Magner, J. A.; Lahti, L. B.

2013-12-01

Minnehaha Creek is among the most valued surface water features in the Minneapolis, MN metro area, with a waterfall as it enters the Minnehaha Creek park. Flow in Minnehaha Creek is heavily dependent on discharge from the stream's origin, Lake Minnetonka, the outlet of which is closed during drought periods to maintain water elevations in the lake resulting in low- (or no-) flow conditions in the creek. Stormwater runoff entering directly to the creek from the creek's largely urbanized watershed exacerbates extremes in flow conditions. Given the cultural and ecological value of this stream system, there is great interest in enhancing the cultural and ecosystem services provided by Minnehaha Creek through improvements in streamflow regime by reducing flashiness and sustaining increased low-flows. Determining the potential for achieving improvements in flow requires first that the current sources of water contributing to low-flows in the creek be identified and quantified. Work on this source identification has involved a number of different approaches, including analyses of the streamflow record using a hydrologic system model framework, examination of the Quaternary and bedrock geology of the region, estimation of groundwater-surface water exchange rates within the channel using hyporheic zone temperature surveys and flux meter measurements, and analyses of the stable isotopes of oxygen and hydrogen in samples of stream water, groundwater, and rainfall. Analysis of baseflow recessions using the method of Brutsaert and Nieber (1977) indicates that only a small portion of the catchment, probably the riparian zone, contributes to baseflows. This result appears to be supported by the observation that the limestone/shale bedrock layer underlying the surficial aquifer has a non-zero permeability, and in a significant portion of the watershed the layer has been eroded away leaving the surficial aquifer ';bottomless' and highly susceptible to vertical (down) water loss. The analysis of the stable isotopes indicate that much of the low flow volume originates from surface storages including wetlands and small lakes within the watershed, with a small amount of the flow originating from groundwater seepage into the creek in the upper reaches of the creek. The temperature surveys and the seepage meter measurements along the main channel of the watershed show a trend that groundwater enters into the creek in the upper reaches, while the flux exchange is from the creek to groundwater in the lower reaches. The differences in flux direction between the upper and lower portions of the creek can be explained by three possible nonexclusive causes. First, the creek empties to the Mississippi River, and as the mouth of the creek is approached, the regional piezometric head drops significantly. Second, the lower end of the creek has a much larger portion of ';bottomless' surficial aquifer and therefore greater potential vertical loss of water. Third, the lower portion of the watershed is more developed and has major stormwater pipe infrastructure, a possible pathway for accelerating drainage of the surficial aquifer. To address the issue of low groundwater contribution to low-flows in the creek it is proposed to divert stormwater to key locations within the riparian zone along the creek, and to infiltrate that water and store it for slow release to the creek during non-rain periods.

Geology of the Right Stepover region between the Rodgers Creek, Healdsburg, and Maacama faults, northern San Francisco Bay region: a contribution to Northern California Geological Society Field Trip Guide, June 6-8, 2003

USGS Publications Warehouse

McLaughlin, Robert J.; Sarna-Wojcicki, Andrei

2003-01-01

This Open file report was written as part of a two-day field trip on June 7 and 8, 2003, conducted for the Northern California Geological Society. The first day of this field trip (June 7) was led by McLaughlin and Sarna-Wojcicki in the area of the right- step between the Rodgers Creek- Healdsburg fault zone and the Maacama fault. The second day of the trip (June 8), was led by David Wagner of the California Geological Survey and students having recently completed MS theses at San Jose State University (James Allen) and San Francisco State University (Carrie Randolph-Loar), as well as a student from San Francisco State University whose MS thesis was in progress in June 2003 (Eric Ford). The second day covered the Rodgers Creek fault zone and related faults of the Petaluma Valley area (the Tolay and Petaluma Valley fault zones).

New high resolution geochemistry of Lower Jurassic marine sections in western North America: A global positive carbon isotope excursion in the Sinemurian?

NASA Astrophysics Data System (ADS)

Porter, Sarah J.; Smith, Paul L.; Caruthers, Andrew H.; Hou, Pengfei; Gröcke, Darren R.; Selby, David

2014-07-01

Recognising variations in the carbon isotope compositions of marine organic-rich sedimentary rocks can provide insight into changes in ocean chemistry throughout geological time. Further, identification of global excursions in the carbon isotope record has proved to be valuable as a chronostratigraphic correlation tool. This investigation presents new high-resolution organic carbon isotope data (δCorg13) for marine sediments from 2 regions in North America (Last Creek, British Columbia, Canada and Five Card Draw, Nevada, USA). The carbon isotope profiles demonstrate that there were significant differences between the carbon reservoirs at Five Card Draw and Last Creek, notably in the upper part of the Leslei Zone. The δCorg13 values show a gradual positive CIE (∼2‰) at Last Creek in the upper part of the Leslei Zone. This corresponds to a coeval positive CIE of similar duration in Dorset, UK (upper Turneri Zone; Jenkyns and Weedon, 2013), suggesting that this may be a global marine carbon isotope signature, and likely reflects a widespread increase in primary productivity during the Early Sinemurian. In addition, a brief negative CIE is observed in the uppermost Lower Sinemurian at Last Creek. This negative excursion is not recorded in the Dorset section, suggesting localised upwelling of 12C-rich bottom-waters at Last Creek. Further, the signals identified at Last Creek are not present in coeval sections at Five Card Draw, thus highlighting a significant difference between these localities. Osmium (Os) isotope data (initial 187Os/188Os values) provide a quantitative determination of the contrasting depositional environments of Five Card Draw and Last Creek (at least partially restricted with high levels of continental inundation and open-ocean, respectively). This demonstrates that basinal restriction may act as a major factor that controls isotopic stratigraphic signatures, thus preventing the identification of global or widespread regional excursions.

Oysters, estuaries, and Late Pleistocene-Holocene sea level, northeastern Gulf of Mexico

DOE Office of Scientific and Technical Information (OSTI.GOV)

Schroeder, W.W.; Shultz, A.W.

1993-03-01

The timing and magnitude of global sea level fluctuations over the past 35 kyr remain nondum ostenduntur after three decades of study. The construction of local relative sea level histories is often complicated by the need to assess regional tectonic and climatic components together. The authors attempt to contribute to an understanding of sea level fluctuations in the northeastern Gulf of Mexico through the application of faunal tracking, using fossil oyster shells as indicators of paleoestuarine environments. They assume that sites on the continental shelf where oysters have been collected were coastal and therefore are reasonable approximations of past shorelinemore » locations and sea-level elevations. They acknowledge that this assumption is a leap of faith for some observers, but is justified as a provisional step toward an independent determination. Insights into Quaternary coastal paleogeography are gathered from locations and radiocarbon ages of American oyster (Crassostrea virginica) shells collected from the Alabama continental shelf. Prior to the onset of the last Wisconsinan glaciation (35 to 26 kyr BP), estuaries occupied a zone 20 to 25 km seaward of today's coastline. As glaciation increased and sea level was lowered (23 to 21 kyr BP), open coastal estuarine conditions developed southward. Oysters dating from the lowstand period (20 to 16 kyr BP) have not been collected. As sea level rose over the next 10 kyr (16 to 6 kyr BP), estuaries were displaced northward in steps. This data on depths and ages can be viewed as supporting an interpretation of fluctuating Holocene sea level, rather than a steady sea-level rise.« less

A Dynamic Nutrient Budget of Subsystem Interactions in a Salt Marsh Estuary

NASA Astrophysics Data System (ADS)

Childers, Daniel L.; McKellar, Henry N.; Dame, Richard F.; Sklar, Fred H.; Blood, Elizabeth R.

1993-02-01

In tidal salt marsh estuaries, the different habitats of the ecosystem interact primarily through the tidal creek water column. These interactions include nutrient and materials exchanges with the salt marsh, oyster reefs, creek bottoms, and adjacent uplands. Nutrient budgets are often used to synthesize these kinds of subsystem exchange data, and are usually based on annual totals without accounting for nutrient variability at finer temporal resolutions. In this paper, we present a dynamic budget of carbon (C), nitrogen (N), and phosphorus (P) for the North Inlet estuary, South Carolina that synthesizes subsystem flux data in a new way. We have developed a dynamic budget that uses a tidal hydrology model to generate daily areas of inundated intertidal habitat (i.e. vegetated marsh and oyster reef) from tidal heights calculated hourly and combines them with flux data to determine a net daily input to, or removal from, the water column. Daily surpluses or deficits of each nutrient were compared with daily rates of change in observed tidally-averaged nutrient concentrations. Particular emphasis was placed on evaluating budget output from the intertidal subsystems. We compared our total annual budgets to values from syntheses of two North Inlet flux studies. Although areas of marsh inundated were 150-200 times greater than areas of oyster reef inundated, interactions per unit volume of estuarine water column were comparable in magnitude for soluble reactive P (SRP), particulate organic C (POC), and dissolved organic C (DOC). The marsh dominated the ammonium (NH +4) and nitrate + nitrite (NN) exchanges in the summer but the NH +4 and POC output were particularly sensitive to changes in oyster reef area. Winter and spring DOC release by the marsh coincided closely (in timing and magnitude) with the peak in DOC concentrations observed in the North Inlet estuary, suggesting that forest stream inputs of DOC are not nearly as important as has been hypothesized. Comparison of our budget predictions to a previous synthesis of the same subsytem flux data confirmed the power of using tidal hydrology to estimate subsystem interactions between sampling times. These comparisons also emphasized the importance of (1) water column processes to NH +4 dynamics (2) subtidal benthic fluxes to DOC dynamics, and (3) external inputs to NN dynamics. By incorporating our best current knowledge of estuary-wide subsystem areas, the dynamic budget also allowed us to link subsystem flux data to the results of a study quantifying exchanges between the estuary and the coastal ocean. That comparison indicated the shortcomings of any site-specific extrapolation to whole-system conclusions where a homogeneous ecosystem must be assumed. We used the differences between our total annual C, N, and P budgets and reported exports of those constituents from the system to generate hypotheses and suggest future research efforts both at North Inlet and southeastern salt marsh estuaries in general.

Effects of respirator use on worker performance

DOE Office of Scientific and Technical Information (OSTI.GOV)

Cardarelli, R.

1995-03-01

In 1993, EPRI funded Yankee Atomic Electric Company to examine the effects of respirator use on worker efficiency. Phase I of Yankee`s effort was to develop a study design to determine respirator effects. Given success in Phase I, a larger population will be tested to determine if a stasitically significant respirator effect on performance can be measured. This paper summarizes the 1993 EPRI/Yankee Respirator Effects of Pilot Study, and describes the study design for the 1994 EPRI/Yankee Respirator Study to be conducted at the Oyster Creek Nuclear Power Plant. Also described is a summary of respirator effect studies that havemore » been conducted during the last ten (10) years.« less

Evolution of the Rodgers Creek–Maacama right-lateral fault system and associated basins east of the northward-migrating Mendocino Triple Junction, northern California

USGS Publications Warehouse

McLaughlin, Robert J.; Sarna-Wojcicki, Andrei M.; Wagner, David L.; Fleck, Robert J.; Langenheim, V.E.; Jachens, Robert C.; Clahan, Kevin; Allen, James R.

2012-01-01

The Rodgers Creek–Maacama fault system in the northern California Coast Ranges (United States) takes up substantial right-lateral motion within the wide transform boundary between the Pacific and North American plates, over a slab window that has opened northward beneath the Coast Ranges. The fault system evolved in several right steps and splays preceded and accompanied by extension, volcanism, and strike-slip basin development. Fault and basin geometries have changed with time, in places with younger basins and faults overprinting older structures. Along-strike and successional changes in fault and basin geometry at the southern end of the fault system probably are adjustments to frequent fault zone reorganizations in response to Mendocino Triple Junction migration and northward transit of a major releasing bend in the northern San Andreas fault. The earliest Rodgers Creek fault zone displacement is interpreted to have occurred ca. 7 Ma along extensional basin-forming faults that splayed northwest from a west-northwest proto-Hayward fault zone, opening a transtensional basin west of Santa Rosa. After ca. 5 Ma, the early transtensional basin was compressed and extensional faults were reactivated as thrusts that uplifted the northeast side of the basin. After ca. 2.78 Ma, the Rodgers Creek fault zone again splayed from the earlier extensional and thrust faults to steeper dipping faults with more north-northwest orientations. In conjunction with the changes in orientation and slip mode, the Rodgers Creek fault zone dextral slip rate increased from ∼2–4 mm/yr 7–3 Ma, to 5–8 mm/yr after 3 Ma. The Maacama fault zone is shown from several data sets to have initiated ca. 3.2 Ma and has slipped right-laterally at ∼5–8 mm/yr since its initiation. The initial Maacama fault zone splayed northeastward from the south end of the Rodgers Creek fault zone, accompanied by the opening of several strike-slip basins, some of which were later uplifted and compressed during late-stage fault zone reorganization. The Santa Rosa pull-apart basin formed ca. 1 Ma, during the reorganization of the right stepover geometry of the Rodgers Creek–Maacama fault system, when the maturely evolved overlapping geometry of the northern Rodgers Creek and Maacama fault zones was overprinted by a less evolved, non-overlapping stepover geometry. The Rodgers Creek–Maacama fault system has contributed at least 44–53 km of right-lateral displacement to the East Bay fault system south of San Pablo Bay since 7 Ma, at a minimum rate of 6.1–7.8 mm/yr.

Effect of enhanced manganese oxidation in the hyporheic zone on basin-scale geochemical mass balance

USGS Publications Warehouse

Harvey, Judson W.; Fuller, Christopher C.

1998-01-01

We determined the role of the hyporheic zone (the subsurface zone where stream water and shallow groundwater mix) in enhancing microbially mediated oxidation of dissolved manganese (to form manganese precipitates) in a drainage basin contaminated by copper mining. The fate of manganese is of overall importance to water quality in Pinal Creek Basin, Arizona, because manganese reactions affect the transport of trace metals. The basin-scale role of the hyporheic zone is difficult to quantify because stream-tracer studies do not always reliably characterize the cumulative effects of the hyporheic zone. This study determined cumulative effects of hyporheic reactions in Pinal Creek basin by characterizing manganese uptake at several spatial scales (stream-reach scale, hyporheic-flow-path scale, and sediment-grain scale). At the stream-reach scale a one-dimensional stream-transport model (including storage zones to represent hyporheic flow paths) was used to determine a reach-averaged time constant for manganese uptake in hyporheic zones, 1/λs, of 1.3 hours, which was somewhat faster but still similar to manganese uptake time constants that were measured directly in centimeter-scale hyporheic flow paths (1/λh= 2.6 hours), and in laboratory batch experiments using streambed sediment (1/λ = 2.7 hours). The modeled depths of subsurface storage zones (ds = 4–17 cm) and modeled residence times of water in storage zones (ts = 3–12 min) were both consistent with direct measurements in hyporheic flow paths (dh = 0–15 cm, th = 1–25 min). There was also good agreement between reach-scale modeling and direct measurements of the percentage removal of dissolved manganese in hyporheic flow paths (fs = 8.9%, andfh = 9.3%rpar;. Manganese uptake experiments in the laboratory using sediment from Pinal Creek demonstrated (through comparison of poisoned and unpoisoned treatments) that the manganese removal process was enhanced by microbially mediated oxidation. The cumulative effect of hyporheic exchange in Pinal Creek basin was to remove approximately 20% of the dissolved manganese flowing out of the drainage basin. Our results illustrate that the cumulative significance of reactive uptake in the hyporheic zone depends on the balance between chemical reaction rates, hyporheic porewater residence time, and turnover of streamflow through hyporheic flow paths. The similarity between the hyporheic reaction timescale (1/λs ≈ 1.3 hours), and the hyporheic porewater residence timescale (ts ≈ 8 min) ensured that there was adequate time for the reaction to progress. Furthermore, it was the similarity between the turnover length for stream water flow through hyporheic flow paths (Ls = stream velocity/storage-zone exchange coefficient ≈ 1.3 km) and the length of Pinal Creek (L ≈ 7 km), which ensured that all stream water passed through hyporheic flow paths several times. As a means to generalize our findings to other sites where similar types of hydrologic and chemical information are available, we suggest a cumulative significance index for hyporheic reactions, Rs = λstsL/Ls (dimensionless); higher values indicate a greater potential for hyporheic reactions to influence geochemical mass balance. Our experience in Pinal Creek basin suggests that values of Rs > 0.2 characterize systems where hyporheic reactions are likely to influence geochemical mass balance at the drainage-basin scale.

Concentrations of Cd, Cu, Pb and Zn in soft tissue of oyster (Saccostrea cucullata) collected from the Lengeh Port coast, Persian Gulf, Iran: a comparison with the permissible limits for public health.

PubMed

Heidari, Behnam; Riyahi Bakhtiari, Alireza; Shirneshan, Golshan

2013-12-01

This study examines concentrations of Cd, Cu, Pb and Zn in the soft tissue of Saccostrea cucullata in the intertidal zones of Lengeh Port, Persian Gulf, Iran, to survey whether heavy metals are within the acceptable limits for public health? The results revealed that the average metal concentrations (μg/g dry weight) ranged from 10.28 to 12.03 for Cd, 294.10 to 345.80 for Cu, 20.64 to 58.23 for Pb and 735.60 to 760.40 for Zn in the soft tissue of oysters. From the human public health point of view, comparison between the mean concentrations of the metals in the soft tissue of oyster and global guidelines clearly indicates that nearly in all cases concentrations are higher than the permissible amounts for human consumption. In addition, levels of Zn, Pb and Cu were well below their recommended oral maximum residue level (MRLs), whereas levels of Cd were observed two times higher. Copyright © 2013 Elsevier Ltd. All rights reserved.

Piceance Creek Basin, Colorado, Oil Shale Geodatabase

USGS Publications Warehouse

,

2006-01-01

This geodatabase is a digital reproduction of three legacy USGS oil shale publications--MF-958 (Pitman and Johnson, 1978), MF-1069 (Pitman, 1979), and OC-132 (Pitman and others, 1990). The database consists of 106 feature classes in three feature datasets organized by publication. Each dataset contains isopach contours, isoresource contours, isoresource polygons, and corehole and drillhole locations with resource values for 12 kerogen-rich (R) and kerogen-lean (L) oil shale zones in the Piceance Creek Basin, Colorado. The uppermost zones, Mahogany and R-6, also contain detailed structure files. The zones in descending order are: Mahogany, R-6, L-5, R-5, L-4, R-4, L-3, R-3, L-2, R-2, L-1, and R-1.

Chemical and Hydrologic Data From the Cement Creek and Upper Animas River Confluence and Mixing Zone, Silverton, Colorado, September 1997

USGS Publications Warehouse

Schemel, Laurence E.; Cox, Marisa H.

2007-01-01

Cement Creek, an acidic tributary, discharges into the circum-neutral Animas River (pH>7) in Silverton, Colorado located in the high-elevation San Juan Mountains. Mixing of Animas River water with acidic metal rich Cement Creek water raises water pH and produces metal precipitates. This report presents selected anion, cation, chloride, and sulfate data along with hydrologic data highlighting the mixing of these streams during the low-flow period in late summer 1997.

78 FR 57838 - Foreign-Trade Zone (FTZ) 21-Dorchester County, South Carolina, Authorization of Production...

Federal Register 2010, 2011, 2012, 2013, 2014

2013-09-20

... DEPARTMENT OF COMMERCE Foreign-Trade Zones Board [B-57-2013] Foreign-Trade Zone (FTZ) 21--Dorchester County, South Carolina, Authorization of Production Activity, AGFA Materials Corporation, (Photographic Film Cutting), Goose Creek, South Carolina On May 17, 2013, the South Carolina State Ports...

Soil water nitrate concentrations in giant cane and forest riparian buffer zones

Treesearch

Jon E. Schoonover; Karl W. J. Williard; James J. Zaczek; Jean C. Mangun; Andrew D. Carver

2003-01-01

Soil water nitrate concentrations in giant cane and forest riparian buffer zones along Cypress Creek in southern Illinois were compared to determine if the riparian zones were sources or sinks for nitrogen in the rooting zone. Suction lysimeters were used to collect soil water samples from the lower rooting zone in each of the two vegetation types. The cane riparian...

Hydrologic Synthesis Across the Critical Zone Observatory Network: A Step Towards Understanding the Coevolution of Critical Zone Function and Structure

NASA Astrophysics Data System (ADS)

Wlostowski, A. N.; Harman, C. J.; Molotch, N. P.

2017-12-01

The physical and biological architecture of the Earth's Critical Zone controls hydrologic partitioning, storage, and chemical evolution of precipitated water. The Critical Zone Observatory (CZO) Network provides an ideal platform to explore linkages between catchment structure and hydrologic function across a gradient of geologic and climatic settings. A legacy of hypothesis-motivated research at each site has generated a wealth of data characterizing the architecture and hydrologic function of the critical zone. We will present a synthesis of this data that aims to elucidate and explain (in the sense of making mutually intelligible) variations in hydrologic function across the CZO network. Top-down quantitative signatures of the storage and partitioning of water at catchment scales extracted from precipitation, streamflow, and meteorological data will be compared with each other, and provide quantitative benchmarks to assess differences in perceptual models of hydrologic function at each CZO site. Annual water balance analyses show that CZO sites span a wide gradient of aridity and evaporative partitioning. The aridity index (PET/P) ranges from 0.3 at Luquillo to 4.3 at Reynolds Creek, while the evaporative index (E/P) ranges from 0.3 at Luquillo (Rio Mamayes) to 0.9 at Reynolds Creek (Reynolds Creek Outlet). Snow depth and SWE observations reveal that snowpack is an important seasonal storage reservoir at three sites: Boulder, Jemez, Reynolds Creek and Southern Sierra. Simple dynamical models are also used to infer seasonal patterns of subsurface catchment storage. A root-zone water balance model reveals unique seasonal variations in plant-available water storage. Seasonal patterns of plant-available storage are driven by the asynchronicity of seasonal precipitation and evaporation cycles. Catchment sensitivity functions are derived at each site to infer relative changes in hydraulic storage (the apparent storage reservoir responsible for modulating streamflow generation). Storage-discharge relationships vary widely across the Network, and may be associated with inter-site differences in sub-surface architecture. Moving forward, we seek to reconcile top-down analysis results against the bottom-up understanding of critical zone structure and hydrologic function at each CZO site.

Forest Creeks Research Natural Area: guidebook supplement 39

Treesearch

Reid Schuller; Ron Halvorson

2010-01-01

This guidebook describes Forest Creeks Research Natural Area, a 164-ha (405-ac) area comprising two geographically distinct canyons and associated drainages. The two units have been established as examples of first- to third-order streams originating within a ponderosa pine (Pinus ponderosa) zone. The two riparian areas also represent examples of...

Geologic setting, sedimentary architecture, and paragenesis of the Mesoproterozoic sediment-hosted Sheep Creek Cu-Co-Ag deposit, Helena embayment, Montana

USGS Publications Warehouse

Graham, Garth; Hitzman, Murray W.; Zieg, Jerry

2012-01-01

The northern margin of the Helena Embayment contains extensive syngenetic to diagenetic massive pyrite horizons that extend over 25 km along the Volcano Valley-Buttress fault zone and extend up to 8 km basinward (south) within the Mesoproterozoic Newland Formation. The Sheep Creek Cu-Co deposit occurs within a structural block along a bend in the fault system, where replacement-style chalcopyrite mineralization is spatially associated mostly with the two stratigraphically lowest massive pyrite zones. These mineralized pyritic horizons are intercalated with debris flows derived from synsedimentary movement along the Volcano Valley-Buttress fault zone. Cominco American Inc. delineated a geologic resource of 4.5 Mt at 2.5% Cu and 0.1% Co in the upper sulfide zone and 4 Mt at 4% Cu within the lower sulfide zone. More recently, Tintina Resources Inc. has delineated an inferred resource of 8.48 Mt at 2.96% Cu, 0.12% Co, and 16.4 g/t Ag in the upper sulfide zone. The more intact upper sulfide zone displays significant thickness variations along strike thought to represent formation in at least three separate subbasins. The largest accumulation of mineralized sulfide in the upper zone occurs as an N-S–trending body that thickens southward from the generally E trending Volcano Valley Fault and probably occupies a paleograben controlled by normal faults in the hanging wall of the Volcano Valley Fault. Early microcrystalline to framboidal pyrite was accompanied by abundant and local barite deposition in the upper and lower sulfide zones, respectively. The sulfide bodies underwent intense (lower sulfide zone) to localized (upper sulfide zone) recrystallization and overprinting by coarser-grained pyrite and minor marcasite that is intergrown with and replaces dolomite. Silicification and paragenetically late chalcopyrite, along with minor tennantite in the upper sulfide zone, replaces fine-grained pyrite, barite, and carbonate. The restriction of chalcopyrite to inferred synsedimentary E- and northerly trending faults and absence of definitive zonation with respect to the Laramide Volcano Valley Fault in the lower sulfide zone suggest a diagenetic age related to basin development for the Sheep Creek Cu-Co-Ag deposit.

Caspar Creek study

Treesearch

Robert R. Ziemer; Eugene Kojan; Robert B. Thomas; Robert A. Muller

1966-01-01

In 1961, the cooperative watershed management research program in the Lower Conifer Zone of California was started. Research in the Lower Conifer Zone was designed to obtain information and develop principles to give greater insight into the effect of land management in the Zone upon water quality, floods and sedimentation, water timing, and water yield. The research...

INTERIOR OF WEST SPAN LOOKING WEST (SHADOW OF VERTICAL LAPS ...

Library of Congress Historic Buildings Survey, Historic Engineering Record, Historic Landscapes Survey

INTERIOR OF WEST SPAN LOOKING WEST (SHADOW OF VERTICAL LAPS PLACED ON ZONE III; ASPHALT ZONE IX) - Honey Run Bridge, Spanning Butte Creek, bypassed section of Honey Run Road (originally Carr Hill Road), Paradise, Butte County, CA

Combined effects of tides, evaporation and rainfall on the soil conditions in an intertidal creek-marsh system

NASA Astrophysics Data System (ADS)

Xin, Pei; Zhou, Tingzhang; Lu, Chunhui; Shen, Chengji; Zhang, Chenming; D'Alpaos, Andrea; Li, Ling

2017-05-01

Salt marshes, distributed globally at the land-ocean interface, are a highly productive eco-system with valuable ecological functions. While salt marshes are affected by various eco-geo-hydrological processes and factors, soil moisture and salinity affect plant growth and play a key role in determining the structure and functions of the marsh ecosystem. To examine the variations of both soil parameters, we simulated pore-water flow and salt transport in a creek-marsh system subjected to spring-neap tides, evaporation and rainfall. The results demonstrated that within a sandy-loam marsh, the tide-induced pore-water circulation averted salt build-up due to evaporation in the near-creek area. In the marsh interior where the horizontal drainage was weak, density-driven flow was responsible for dissipating salt accumulation in the shallow soil layer. In the sandy-loam marsh, the combined influences of spring-neap tides, rainfall and evaporation led to the formation of three characteristic zones, c.f., a near-creek zone with low soil water saturation (i.e., well-aerated) and low pore-water salinity as affected by the semi-diurnal spring tides, a less well-aerated zone with increased salinity where drainage occurred during the neap tides, and an interior zone where evaporation and rainfall infiltration regulated the soil conditions. These characteristics, however, varied with the soil type. In low-permeability silt-loam and clay-loam marshes, the tide-induced drainage weakened and the soil conditions over a large area became dominated by evaporation and rainfall. Sea level rise was found to worsen the soil aeration condition but inhibit salt accumulation due to evaporation. These findings shed lights on the soil conditions underpinned by various hydrogeological processes, and have important implications for further investigations on marsh plant growth and ecosystem functions.

76 FR 62631 - Archers Creek, Ribbon Creek, and Broad River; U.S. Marine Corps Recruit Depot, Parris Island, SC...

Federal Register 2010, 2011, 2012, 2013, 2014

2011-10-11

... incorporate modern methods of measuring ballistic footprints and design criteria for range construction. Since... affected by this regulation. List of Subjects in 33 CFR Part 334 Danger zones, Navigation (water...]21'34'' N, longitude 80[deg]42'48'' W, thence follow the mean high water line southwesterly around...

High Peak/Moon Creek Research Natural Area: guidebook supplement 30.

Treesearch

Reid. Schuller

2006-01-01

This guidebook describes the High Peak/Moon Creek Research Natural Area, a 617.5-ha (1,526-ac) tract of coniferous forest containing stands dominated by 100-to 150-year-old Douglas-fir, a small old-growth (500+ years) Douglas-fir stand, and riparian vegetation within the western hemlock zone of the Coast Range in western Oregon.

Helicopter Electromagnetic and Magnetic Survey Data and Maps, Seco Creek Area, Medina and Uvalade Counties, Texas

USGS Publications Warehouse

Smith, Bruce D.; Smith, David V.; Hill, Patricia L.; Labson, Victor F.

2003-01-01

A helicopter electromagnetic and magnetic (HEM) survey was completed of a 209 square kilometer (81 square miles) area of the central Edwards aquifer. This open-file report is a release of the airborne geophysical data and a summary of the hydrologic application. The survey area was centered on the Valdina Farms sinkhole along the Seco Creek drainage in western Medina County, Texas. Flight lines were flown north south with three east west tie lines to aid in leveling the magnetic data. Additional lines were flown on each side of the Seco and Little Seco Creek drainages. A five kilometer (4 mile) extension of 15 lines was flown north of the main survey block centered on Seco Creek. This digital data release contains the flight line data, grids, and maps of the HEM survey data. The Edwards aquifer in this area consists of three hydrologic zones: catchment, recharge, and confined. The Glen Rose Formation is exposed in the catchment area. The recharge zone is situated in the Balcones fault zone where the Devils River Group of the Edwards aquifer has been exposed by normal faults. The magnetic data is not discussed in depth here, but does have high amplitude closed anomalies caused by shallow igneous intrusives. The Woodard Cave Fault that separates the recharge and catchment zones is in places associated with a weak linear magnetic low. The HEM data has been processed to produce apparent resistivities for each of the six EM coil pairs and frequencies. Maps of the apparent resistivity for the five horizontal coil pairs show that the catchment, recharge, and confined zones all have numerous linear features that are likely caused by structures, many of which have not been mapped. The distribution of high resistivity areas reflects the lithologic differences within the Trinity and Edwards aquifers.

AmeriFlux US-ICs Imnavait Creek Watershed Wet Sedge Tundra

DOE Data Explorer

Bret-Harte, Syndonia [University of Alaska Fairbanks; Euskirchen, Eugenie [University of Alaska Fairbanks; Shaver, Gaius [Marine Biological Laboratory

2016-01-01

This is the AmeriFlux version of the carbon flux data for the site US-ICs Imnavait Creek Watershed Wet Sedge Tundra. Site Description - The Imnavait Creek Watershed Wet Sedge Tundra (Fen Station) is located near Imnavait Creek in Alaska, north of the Brooks Range in the Kuparuk basin near Lake Toolik and the Toolik Field Station. The Kuparuk River has its headwaters in the Brooks Range and drains through northern Alaska into the Arctic Ocean. Within these headwaters lies the Imnavait basin at an average elevation of 930 m. Water tracks run down the hill in parallel zones with a spacing of approximately 10 m. The Fen Station was deployed at the end of Summer 2007.

AmeriFlux US-ICh Imnavait Creek Watershed Heath Tundra

DOE Data Explorer

Bret-Harte, Syndonia [University of Alaska Fairbanks; Euskirchen, Eugenie [University of Alaska Fairbanks; Shaver, Gaius [Marine Biological Laboratory

2016-01-01

This is the AmeriFlux version of the carbon flux data for the site US-ICh Imnavait Creek Watershed Heath Tundra. Site Description - The Imnavait Creek Watershed Heath Tundra (Ridge Station) is located near Imnavait Creek in Alaska, north of the Brooks Range in the Kuparuk basin near Lake Toolik and the Toolik Field Station. The Kuparuk River has its headwaters in the Brooks Range and drains through northern Alaska into the Arctic Ocean. Within these headwaters lies the Imnavait basin at an average elevation of 930 m. Water tracks run down the hill in parallel zones with a spacing of approximately 10 m. The Ridge Station was deployed at the end of Summer 2007.

Geology and hydrostratigraphy of Guadalupe River State Park and Honey Creek State Natural Area, Kendall and Comal Counties, Texas

USGS Publications Warehouse

Clark, Allan K.; Blome, Charles D.; Morris, Robert R.

2014-01-01

The faulting and fracturing in the study area are part of the Miocene Balcones Fault Zone, which is an extensional system of faults that generally trend southwest to northeast in south-central Texas. An igneous dike, containing aphanitic texture, cuts through the center of the study area near the confluence of Honey Creek and the Guadalupe River. The dike penetrates the Cow Creek Limestone and the lower part of the Hensell Sand, which outcrops at three locations.

Narrow hybrid zone between two subspecies of big sagebrush (Artemisia tridentata: Asteraceae): XI. Plant-insect interactions in reciprocal transplant gardens

Treesearch

John H. Graham; E. Durant McArthur; D. Carl Freeman

2001-01-01

Basin big sagebrush (Artemisia tridentata ssp. tridentata) and mountain big sagebrush (A. t. ssp. vaseyana) hybridize in a narrow zone near Salt Creek, Utah. Reciprocal transplant experiments in this hybrid zone demonstrate that hybrids are more fit than either parental subspecies, but only in the hybrid zone. Do hybrids experience greater, or lesser, use by...

Rare-Earth Elements from Modern Mineral-Organic Associations in the Zone of Sulfide Ore Hypergenesis

NASA Astrophysics Data System (ADS)

Vakh, E. A.; Vakh, A. S.; Petukhov, V. I.; Barinov, N. N.

2018-01-01

The REE composition of modern mineral-organic associations in the sulfide ore hypergenesis zone of the Berezitovoe deposit in the Russian Far East was studied for the first time. It is shown that the mineral-organic associations widely abundant in the valley of Konstantinovskii Creek and represented by bright brown crusts on the surface of deluvial deposits were formed at the expense of the influence of acid highly mineralized mine waters from the Berezitovoe deposit. The mineral-organic associations found in the Creek valley may be considered as a new indicator for evaluation of the geoecological state of modern technogenic landscapes.

Spatial patterns in the condition index of the wild Pacific oyster Crassostrea gigas in a macrotidal coastal ecosystem: Influence of tidal processes and beyond

NASA Astrophysics Data System (ADS)

Gasmi, Sonia; Bernard, Ismaël; Pouvreau, Stéphane; Maurer, Danièle; Schaal, Gauthier; Ganthy, Florian; Cominassi, Louise; Allain, Gwenhael; Sautour, Benoit; David, Valérie

2017-01-01

In macrotidal coastal ecosystems, spatial heterogeneity of the water column properties is induced by both oceanic and continental influences. Hydrodynamic processes generate a land-sea gradient of environmental conditions, affecting the biological performances of sedentary organisms. The aim of the present study is to establish an extensive spatial assessment in the reproductive investment of the wild Pacific oyster Crassostrea gigas in Arcachon Bay. This is done by looking for a relationship between the Lawrence and Scott condition index (LSCI) and two tidal processes: the immersion level (IL) and the local oceanic flushing time (LoFt). The LSCI of C. gigas was assessed, just before gamete release, at 68 sampling stations in Arcachon Bay. Oyster performance was overall low and spatially variable. Significant differences in the LSCI were detected between the outer and inner bay. Oyster reefs located toward the mouth of the bay exhibited high LSCI (between 9 and 11), while oyster reefs located in inner bay, especially in south-eastern part around the Eyre River, had low LSCI (below 6). Linear modelling allowed to highlight significant effects of both tidal processes IL and LoFt on the obtained LSCI gradient. IL, LoFt explained 33% of the spatial variability observed on LSCI (IL = 3%; LoFt = 17%; LoFt + IL: 13%), 6% were attributed to the intra-station variation (ISv). Thus, high IL and rapid LoFt favor a better development of somatic-gonadal volume, probably because of longer feeding time and higher supply of food from the ocean by tide flows. Disentangling the effects of IL and LoFt on LSCI allowed to describe the spatial pattern in 61% of variability not explained by both tidal factors. A residual gradient directed southeast-northwest highlighted that others factors, independent from IL and LoFt seems to hamper inner bay oyster reproductive performance. Consequently, investigating on the ecological functioning (Eyre influences), trophic potential and anthropogenic pressures of this zone seem crucial on the understanding of C. gigas reproductive pattern in Arcachon Bay.

Paleoseismology of the Nephi Segment of the Wasatch Fault Zone, Juab County, Utah - Preliminary Results From Two Large Exploratory Trenches at Willow Creek

USGS Publications Warehouse

Machette, Michael N.; Crone, Anthony J.; Personius, Stephen F.; Mahan, Shannon; Dart, Richard L.; Lidke, David J.; Olig, Susan S.

2007-01-01

In 2004, we identified a small parcel of U.S. Forest Service land at the mouth of Willow Creek (about 5 km west of Mona, Utah) that was suitable for trenching. At the Willow Creek site, which is near the middle of the southern strand of the Nephi segment, the WFZ has vertically displaced alluvial-fan deposits >6-7 m, forming large, steep, multiple-event scarps. In May 2005, we dug two 4- to 5-m-deep backhoe trenches at the Willow Creek site, identified three colluvial wedges in each trench, and collected samples of charcoal and A-horizon organic material for AMS (acceleration mass spectrometry) radiocarbon dating, and sampled fine-grained eolian and colluvial sediment for luminescence dating. The trenches yielded a stratigraphic assemblage composed of moderately coarse-grained fluvial and debris-flow deposits and discrete colluvial wedges associated with three faulting events (P1, P2, and P3). About one-half of the net vertical displacement is accommodated by monoclinal tilting of fan deposits on the hanging-wall block, possibly related to massive ductile landslide deposits that are present beneath the Willow Creek fan. The timing of the three surface-faulting events is bracketed by radiocarbon dates and results in a much different fault chronology and higher slip rates than previously considered for this segment of the Wasatch fault zone.

33 CFR 334.500 - St. Johns River, Atlantic Ocean, Sherman Creek; restricted areas and danger zone, Naval Station...

Code of Federal Regulations, 2011 CFR

2011-07-01

... 33 Navigation and Navigable Waters 3 2011-07-01 2011-07-01 false St. Johns River, Atlantic Ocean... AND RESTRICTED AREA REGULATIONS § 334.500 St. Johns River, Atlantic Ocean, Sherman Creek; restricted... area and the Atlantic Ocean restricted area described in paragraphs (a)(2) and (a)(3) of this section...

33 CFR 334.500 - St. Johns River, Atlantic Ocean, Sherman Creek; restricted areas and danger zone, Naval Station...

Code of Federal Regulations, 2012 CFR

2012-07-01

... 33 Navigation and Navigable Waters 3 2012-07-01 2012-07-01 false St. Johns River, Atlantic Ocean... AND RESTRICTED AREA REGULATIONS § 334.500 St. Johns River, Atlantic Ocean, Sherman Creek; restricted... area and the Atlantic Ocean restricted area described in paragraphs (a)(2) and (a)(3) of this section...

33 CFR 334.500 - St. Johns River, Atlantic Ocean, Sherman Creek; restricted areas and danger zone, Naval Station...

Code of Federal Regulations, 2013 CFR

2013-07-01

... 33 Navigation and Navigable Waters 3 2013-07-01 2013-07-01 false St. Johns River, Atlantic Ocean... AND RESTRICTED AREA REGULATIONS § 334.500 St. Johns River, Atlantic Ocean, Sherman Creek; restricted... area and the Atlantic Ocean restricted area described in paragraphs (a)(2) and (a)(3) of this section...

Turbidity changes during culvert to bridge upgrades at Carmen Creek, Idaho

Treesearch

Randy B. Foltz; Breann Westfall; Ben Kopyscianski

2012-01-01

Carmen Creek, a tributary to the Salmon River in Idaho, was the site of two culvert to bridge upgrade operations in September and October 2011. Both locations were upgraded from multiple, large diameter culverts to bridge crossings. Turbidity readings measured at the end of the mixing zone during the nearly three weeks of upgrade construction activities did not exceed...

BACA Project: geothermal demonstration power plant. Final report

DOE Office of Scientific and Technical Information (OSTI.GOV)

Not Available

1982-12-01

The various activities that have been conducted by Union in the Redondo Creek area while attempting to develop the resource for a 50 MW power plant are described. The results of the geologic work, drilling activities and reservoir studies are summarized. In addition, sections discussing the historical costs for Union's involvement with the project, production engineering (for anticipated surface equipment), and environmental work are included. Nineteen geothermal wells have been drilled in the Redondo Creek area of the Valles Caldera: a prominent geologic feature of the Jemez mountains consisting of Pliocene and Pleistocene age volcanics. The Redondo Creek area ismore » within a complex longitudinal graben on the northwest flank of the resurgent structural dome of Redondo Peak and Redondo Border. The major graben faults, with associated fracturing, are geologically plausible candidates for permeable and productive zones in the reservoir. The distribution of such permeable zones is too erratic and the locations too imprecisely known to offer an attractive drilling target. Log analysis indicates there is a preferred mean fracture strike of N31W in the upper portion of Redondo Creek wells. This is approximately perpendicular to the major structure in the area, the northeast-striking Redondo Creek graben. The geothermal fluid found in the Redondo Creek reservoir is relatively benign with low brine concentrations and moderate H/sub 2/S concentrations. Geothermometer calculations indicate that the reservoir temperature generally lies between 500/sup 0/F and 600/sup 0/F, with near wellbore flashing occurring during the majority of the wells' production.« less

Structural deformation at the Flynn Creek impact crater, Tennessee - A preliminary report on deep drilling

NASA Technical Reports Server (NTRS)

Roddy, D. J.

1979-01-01

The geologic and core drilling studies described in the present paper show that the Flynn Creek crater has such distinctive morphological features as a broad flat hummocky floor; large central peak; locally terraced crater walls; uplifted, as well as flat-lying rim segments; and a surrounding ejecta blanket. The major structural features include a shallow depth of total brecciation and excavation as compared with apparent crater diameter; a thin breccia lens underlain by a thin zone of disrupted strata; concentric ring fault zones in inner rim, beneath crater wall, and outer crater floor regions; a large central uplift underlain by a narrow dipping zone of deeply disrupted strata; faulted, folded, brecciated, and fractured rim strata; and uplifted rim strata, which dip away from the crater, and flat-lying rim strata, which terminate as inward dipping rocks.

The contribution of oyster microbiomes to denitrification and nitrous oxide emissions in estuarine and coastal ecosystems

NASA Astrophysics Data System (ADS)

Arfken, A. M.; Song, B.; Smyth, A.

2016-02-01

Oysters are important nitrogen transformers in estuaries. Studies have shown that benthic-pelagic coupling by oysters stimulates sedimentary denitrification. The microbiomes living in and on oysters may also have high denitrification activity, generating N2O and N2 as end products. In order to evaluate the importance of oyster microbiome denitrification and its contribution to N2O emission in estuaries, continuous flow experiments with 15NO3- addition were conducted with oyster reef adjacent sediments, live oysters, live oysters with biofilm removed, and oyster shells. Denitrification rates were highest in live oysters, followed by scrubbed oysters, oyster shells, and finally by sediments, with the lowest activity. N2O production followed a similar trend, but with scrubbed oysters and shells being similar. We also found a significant linear correlation between N2 and N2O production, which indicates that denitrification is the source of N2O from oyster and oyster shells. Molecular analysis of microbiomes in oyster shells, guts and gills will be conducted using next generation sequencing of 16S rRNA gene and quantitative PCR assays targeting the functional genes in denitrification. We expect that within live oysters, the anaerobic gut microbiome will have higher abundances of denitrifiers than the shell biofilms or sediments, corresponding to higher denitrification activities in live oysters. This study will demonstrate that enhanced denitrification activity in oysters, in conjunction with sedimentary denitrification stimulated by oyster biodeposits, leads to oyster reefs being nitrogen removal hotspots and potential emission sources of N2O in estuarine and coastal ecosystems. In addition, the importance of microbiome structures in relation to oyster denitrification will be revealed.

75 FR 27507 - Safety Zone; Delaware River, Big Timber Creek, Westville, NJ

Federal Register 2010, 2011, 2012, 2013, 2014

2010-05-17

... in June with a rain date of the first Saturday in July. This Safety Zone is necessary to provide for... p.m. on the last Saturday in June with a rain date of the first Saturday in July. Dated: April 29...

AmeriFlux US-ICt Imnavait Creek Watershed Tussock Tundra

DOE Data Explorer

Bret-Harte, Syndonia [University of Alaska Fairbanks; Euskirchen, Eugenie [University of Alaska Fairbanks; Shaver, Gaius [Marine Biological Laboratory

2016-01-01

This is the AmeriFlux version of the carbon flux data for the site US-ICt Imnavait Creek Watershed Tussock Tundra. Site Description - The Imnavait Creek Watershed Tussock Tundra (Biocomplexity Station) is located near Imnavait Creek in Alaska, north of the Brooks Range in the Kuparuk basin near Lake Toolik and the Toolik Field Station. The Kuparuk River has its headwaters in the Brooks Range and drains through northern Alaska into the Arctic Ocean. Within these headwaters lies the Imnavait basin at an average elevation of 930 m. Water tracks run down the hill in parallel zones with a spacing of approximately 10 m. The Biocomplexity Station was deployed in 2004, and it has been in operation during the melt seasons ever since.

77 FR 46376 - Foreign-Trade Zone 43-Battle Creek, MI; Application for Reorganization Under Alternative Site...

Federal Register 2010, 2011, 2012, 2013, 2014

2012-08-03

... ``usage-driven'' FTZ sites for operators/users located within a grantee's ``service area'' in the context of the Board's standard 2,000-acre activation limit for a general-purpose zone project. The application was submitted pursuant to the Foreign-Trade Zones Act, as amended (19 U.S.C. 81a-81u), and the...

33 CFR 334.500 - St. Johns River, Atlantic Ocean, Sherman Creek; restricted areas and danger zone, Naval Station...

Code of Federal Regulations, 2014 CFR

2014-07-01

... north by Perimeter Road, and on the east by Mayport Road. (5) Danger zone. The danger zone shall... hours a day, seven days a week. Warning signs notifying individuals of the restricted area boundary and... will be in place 24 hours a day, seven days a week. Warning signs notifying individuals of the...

Soil-landscape relationships at the lower reaches of a watershed at Bear Creek near Oak Ridge, Tennessee

Treesearch

D.H. Phillips; J.E. Foss; C.A. Stiles; Carl C. Trettin; R.J. Luxmoore

2000-01-01

The watersheds at Bear Creek, Oak Ridge, TN, have similar soil-landscape relationships. The lower reaches of many of these watersheds consist of headwater riparian wetlands situated between sloping non-wetland upland zones. The objectives of this study are to examine the effects of (i) slope and geomorphic processes, (ii) human impacts, and (iii) particular...

Geology of Tenderfoot Creek Experimental Forest Little Belt Mountains, Meagher County, Montana

Treesearch

Mitchell W. Reynolds

1975-01-01

The Tenderfoot Creek Experimental Forest in the west-central part of the Little Belt Mountains occupies a transition zone in the west-central part of the Mountains-a transition from rolling mountain parks with rounded peaks that rise about 500 feet above the upland of the range to deeply incised canyons that drain the west end of the Mountains. The Experimental Forest...

Predicting changes in hydrologic retention in an evolving semi-arid alluvial stream

USGS Publications Warehouse

Harvey, J.W.; Conklin, M.H.; Koelsch, R.S.

2003-01-01

Hydrologic retention of solutes in hyporheic zones or other slowly moving waters of natural channels is thought to be a significant control on biogeochemical cycling and ecology of streams. To learn more about factors affecting hydrologic retention, we repeated stream-tracer injections for 5 years in a semi-arid alluvial stream (Pinal Creek, Ariz.) during a period when streamflow was decreasing, channel width increasing, and coverage of aquatic macrophytes expanding. Average stream velocity at Pinal Creek decreased from 0.8 to 0.2 m/s, average stream depth decreased from 0.09 to 0.04 m, and average channel width expanded from 3 to 13 m. Modeling of tracer experiments indicated that the hydrologic retention factor (Rh), a measure of the average time that solute spends in storage per unit length of downstream transport, increased from 0.02 to 8 s/m. At the same time the ratio of cross-sectional area of storage zones to main channel cross-sectional area (As/A) increased from 0.2 to 0.8 m2/m2, and average water residence time in storage zones (ts) increased from 5 to 24 min. Compared with published data from four other streams in the US, Pinal Creek experienced the greatest change in hydrologic retention for a given change in streamflow. The other streams differed from Pinal Creek in that they experienced a change in streamflow between tracer experiments without substantial geomorphic or vegetative adjustments. As a result, a regression of hydrologic retention on streamflow developed for the other streams underpredicted the measured increases in hydrologic retention at Pinal Creek. The increase in hydrologic retention at Pinal Creek was more accurately predicted when measurements of the Darcy-Weisbach friction factor were used (either alone or in addition to streamflow) as a predictor variable. We conclude that relatively simple measurements of channel friction are useful for predicting the response of hydrologic retention in streams to major adjustments in channel morphology as well as changes in streamflow. Published by Elsevier Ltd.

Late Holocene slip rate and ages of prehistoric earthquakes along the Maacama Fault near Willits, Mendocino County, northern California

USGS Publications Warehouse

Prentice, Carol S.; Larsen, Martin C.; Kelsey, Harvey M.; Zachariasen, Judith

2014-01-01

The Maacama fault is the northward continuation of the Hayward–Rodgers Creek fault system and creeps at a rate of 5.7±0.1  mm/yr (averaged over the last 20 years) in Willits, California. Our paleoseismic studies at Haehl Creek suggest that the Maacama fault has produced infrequent large earthquakes in addition to creep. Fault terminations observed in several excavations provide evidence that a prehistoric surface‐rupturing earthquake occurred between 1060 and 1180 calibrated years (cal) B.P. at the Haehl Creek site. A folding event, which we attribute to a more recent large earthquake, occurred between 790 and 1060 cal B.P. In the last 560–690 years, a buried channel deposit has been offset 4.6±0.2  m, giving an average slip rate of 6.4–8.6  mm/yr, which is higher than the creep rate over the last 20 years. The difference between this slip rate and the creep rate suggests that coseismic slip up to 1.7 m could have occurred after the formation of the channel deposit and could be due to a paleoearthquake known from paleoseismic studies in the Ukiah Valley, about 25 km to the southeast. Therefore, we infer that at least two, and possibly three, large earthquakes have occurred at the Haehl Creek site since 1180 cal B.P. (770 C.E.), consistent with earlier studies suggesting infrequent, large earthquakes on the Maacama fault. The short‐term geodetic slip rate across the Maacama fault zone is approximately twice the slip rate that we have documented at the Haehl Creek site, which is averaged over the last approximately 600 years. If the geodetic rate represents the long‐term slip accumulation across the fault zone, then we infer that, in the last ∼1200 years, additional earthquakes may have occurred either on the Haehl Creek segment of the Maacama fault or on other active faults within the Maacama fault zone at this latitude.

Bioaccumulation of trace metals in farmed pacific oysters Crassostrea gigas from SW Gulf of California coast, Mexico.

PubMed

Jonathan, M P; Muñoz-Sevilla, N P; Góngora-Gómez, Andrés Martin; Luna Varela, Raquel Gabriela; Sujitha, S B; Escobedo-Urías, D C; Rodríguez-Espinosa, P F; Campos Villegas, Lorena Elizabeth

2017-11-01

The aim of the study was to evaluate the bioavailability of trace metals (Chromium, Copper, Nickel, Lead, Zinc, Cadmium, Arsenic, and Mercury) in the commercially consumed Crassostrea gigas oysters collected over a 12-month growth period (2011-12) from an experimental cultivation farm in La Pitahaya, Sinaloa State, Mexico. Sediment and water samples were also collected from four different zones adjacent to the cultivation area to identify the concentration patterns of metals. The results revealed that sewage disposals, fertilizers used for agricultural practices and shrimp culture are the major sources for the enrichment of certain toxic metals. The metal concentrations in oysters presented a decreasing order of abundance (all values in mg Kg -1 ): Zn (278.91 ± 93.03) > Cu (63.13 ± 31.72) > Cr (22.29 ± 30.23) > Cd (14.54 ± 4.28) > Ni (9.41 ± 11.33) > Pb (2.22 ± 1.33) > As (0.58 ± 0.91) > Hg (0.04 ± 0.06). Bioconcentration Factor (BCF) and Biota Sediment Accumulation Factor (BSAF) exhibited that C. gigas in the region are strong accumulators for Zn and Cd respectively. Thus, the present study proves to fulfill the gap in understanding the rate of bioaccumulation of metals in C. gigas which is regarded as the most sought after oyster species globally. Copyright © 2017 Elsevier Ltd. All rights reserved.

Descriptions of the Animas River-Cement Creek confluence and mixing zone near Silverton, Colorado, during the late summers of 1996 and 1997

USGS Publications Warehouse

Schemel, Laurence E.; Cox, Marisa H.

2005-01-01

Acidic waters from Cement Creek discharge into the circum-neutral Animas River in a high-elevation region of the San Juan Mountains near Silverton, Colorado. Cement Creek is acidic and enriched in metals and sulfate because it is fed by discharges from abandoned mines and natural mineral deposits. Mixing with the Animas River raises the pH and produces precipitates of iron and aluminum (oxy)hydroxides, which in turn can adsorb other metals. This confluence was studied in 1996 and 1997 to better understand mixing and sorption processes which are common during the neutralization of acidic streams. The photographs in this report show flow braiding and other features that influenced the way the two streams mixed during the late summers of the two years. They also show 'banding' due to incomplete mixing and 'opalescence' due to chemical reactions and the formation of colloidal-size particles in the mixing zone.

A study of fecal coliform sources at a coastal site using colored dissolved organic matter (CDOM) as a water source tracer.

PubMed

Clark, Catherine D; O'Connor, Adam P; Foley, Denise M; de Bruyn, Warren J

2007-09-01

Optical properties of colored dissolved organic matter (CDOM) were measured as a tracer of polluted waters in a Southern California surf-zone with consistently high levels of fecal indicator bacteria. Salinity, temperature, fecal coliform, absorbance (200-700nm) and fluorescence (lambda(excitation)=350nm; lambda(emission)=360-650nm) were measured in the creek and surf-zone during a dry and rain event. Fluorescence to absorption ratios for CDOM were used to distinguish water masses, with two distinct CDOM end-members identified as creek (flu/abs=8.7+/-0.8x10(4)) and coastal (flu/abs=2.2+/-0.3x10(4)). Waters containing the same CDOM end-member had highly variable bacterial levels during the dry event, suggesting intermittent sources of bacteria added to a uniform water source, consistent with marine birds. During the rain event, increased levels of the creek end-member and bacteria indicated a second bacteria source from runoff.

77 FR 73009 - Reorganization of Foreign-Trade Zone 43 Under Alternative Site Framework, Battle Creek, MI

Federal Register 2010, 2011, 2012, 2013, 2014

2012-12-07

... Protection port of entry, FTZ 43's existing Site 1 would be categorized as a magnet site and existing Site 8... limit for the zone, to a five-year ASF sunset provision for magnet sites that would terminate authority...

Preliminary thermal-maturity map of the Cameo and Fairfield or equivalent coal zone in the Piceance Creek Basin, Colorado

USGS Publications Warehouse

Nuccio, Vito F.; Johnson, Ronald C.

1983-01-01

This map was prepared in cooperation with the U.S. Department of Energy's Western Gas Sands Project and was constructed to show the thermal maturity of the Upper Cretaceous Mesaverde Formation (or Group) in the Piceance Creek Basin. The ability of a source rock to generate oil and gas is directly related to its kerogen content and thermal maturity; hence, thermal maturity is commonly used as an exploration tool. This publication consists of two parts: a coal rank map for the basinwide Cameo and Fairfield or equivalent coal zone and three cross sections showing the variation in a coal rank for the entire Mesaverde. Structure contours on the map show the top of the Rollins Sandstone Member of the Mesaverde Formation and its equivalent the Trout Creek Sandstone Member of the Iles Formation of the Mesaverde Group, which immediately underlie the Cameo and Fairfield zone. The structure contours show the fairly strong correlation between structure and coal rank in the basin, suggesting that maximum overburden was the key factor in determining the coal ranks. Even in the southern part of the basin where extensive plutonism occurred during the Oligocene, coal ranks still generally follow structure; indicating that the plutons had little affect on the coals. On the cross sections both the top of the Rollins and Trout Creek, and the top of the Mesaverde Formation/Group are shown. A complete analysis of the entire Mesaverde in the basin would require more information than is presently available.

Stable isotopic fingerprint of a hyporheic-hypolentic boundary in a reservoir

NASA Astrophysics Data System (ADS)

Aseltyne, Todd A.; Rowe, Harold D.; Fryar, Alan E.

2006-12-01

Stable isotopes of H2O are used to define the hyporheic-hypolentic boundary in Ledbetter Creek as it discharges to Kentucky Lake, a constructed reservoir in western Kentucky, USA. High-resolution (centimeter-scale) sample collection and analysis were utilized to determine one-dimensional variations in δ2H and δ18O of H2O and chloride (Cl-) across the boundary. During reservoir low stand in winter, the hyporheic-hypolentic zone contains water from Ledbetter Creek and groundwater separated by an interface at ~10 cm below the channel bottom. Following reservoir-stage increase in spring and summer, water from Kentucky Lake infiltrates into the hyporheic-hypolentic zone to a depth of at least 18 cm below the channel bottom. Reservoir-stage decline in autumn causes source-water mixing, largely obscuring the hyporheic-hypolentic boundary. Stable isotopes provide an effective complement to conventional tracers for delineation of water masses within the hyporheic-hypolentic zone.

Use of distance measures to assess environmental and genetic variability across sagebrush hybrid zones

Treesearch

D. Carl Freeman; John H. Graham; Terra Jones; Han Wang; Kathleen J. Miglia; E. Durant McArthur

2001-01-01

Reciprocal transplant studies in the big sagebrush hybrid zone at Salt Creek Canyon, Utah, showed that hybrids between basin (Artemisia tridentata ssp. tridentata) and mountain big sagebrush (A. t. ssp. vaseyana) are more fit than either parental taxon, but only when raised in the hybrid zone. Hybrids are less fit than the native parent when raised in the parental...

Estimating the impact of oyster restoration scenarios on transient fish production

USGS Publications Warehouse

McCoy, Elizabeth; Borrett, Stuart R.; LaPeyre, Megan K.; Peterson, Bradley J.

2017-01-01

Oyster reef restoration projects are increasing in number both to enhance oyster density and to retain valuable ecosystem services provided by oyster reefs. Although some oyster restoration projects have demonstrated success by increasing density and biomass of transient fish, it still remains a challenge to quantify the effects of oyster restoration on transient fish communities. We developed a bioenergetics model to assess the impact of selected oyster reef restoration scenarios on associated transient fish species. We used the model to analyze the impact of changes in (1) oyster population carrying capacity; (2) oyster population growth rate; and (3) diet preference of transient fish on oyster reef development and associated transient fish species. Our model results indicate that resident fish biomass is directly affected by oyster restoration and oyster biomass, and oyster restoration can have cascading impacts on transient fish biomass. Furthermore, the results highlight the importance of a favorable oyster population growth rate during early restoration years, as it can lead to rapid increases in mean oyster biomass and biomass of transient fish species. The model also revealed that a transient fish's diet solely dependent on oyster reef-derived prey could limit the biomass of transient fish species, emphasizing the importance of habitat connectivity in estuarine areas to enhance transient fish species biomass. Simple bioenergetics models can be developed to understand the dynamics of a system and make qualitative predictions of management and restoration scenarios.

Prevalence and characterization of Salmonella serovars isolated from oysters served raw in restaurants.

PubMed

Brillhart, Crystal D; Joens, Lynn A

2011-06-01

To determine if Salmonella-contaminated oysters are reaching consumer tables, a survey of raw oysters served in eight Tucson restaurants was performed from October 2007 to September 2008. Salmonella spp. were isolated during 7 of the 8 months surveyed and were present in 1.2% of 2,281 oysters tested. This observed prevalence is lower than that seen in a previous study in which U.S. market oysters were purchased from producers at bays where oysters are harvested. To test whether the process of refrigerating oysters in restaurants for several days reduces Salmonella levels, oysters were artificially infected with Salmonella and kept at 4°C for up to 13 days. Direct plate counts of oyster homogenate showed that Salmonella levels within oysters did not decrease during refrigeration. Six different serovars of Salmonella enterica were found in the restaurant oysters, indicating multiple incidences of Salmonella contamination of U.S. oyster stocks. Of the 28 contaminated oysters, 12 (43%) contained a strain of S. enterica serovar Newport that matched by pulsed-field gel electrophoresis a serovar Newport strain seen predominantly in the study of bay oysters performed in 2002. The repeated occurrence of this strain in oyster surveys is concerning, since the strain was resistant to seven antimicrobials tested and thus presents a possible health risk to consumers of raw oysters.

Early Tertiary transtension-related deformation and magmatism along the Tintina fault system, Alaska

USGS Publications Warehouse

Till, A.B.; Roeske, S.M.; Bradley, D.C.; Friedman, R.; Layer, P.W.

2007-01-01

Transtensional deformation was concentrated in a zone adjacent to the Tintina strike-slip fault system in Alaska during the early Tertiary. The deformation occurred along the Victoria Creek fault, the trace of the Tintina system that connects it with the Kaltag fault; together the Tintina and Kaltag fault systems girdle Alaska from east to west. Over an area of ???25 by 70 km between the Victoria Creek and Tozitna faults, bimodal volcanics erupted; lacustrine and fluvial rocks were deposited; plutons were emplaced and deformed; and metamorphic rocks cooled, all at about the same time. Plutonic and volcanic rocks in this zone yield U-Pb zircon ages of ca. 60 Ma; 40Ar/ 39Ar cooling ages from those plutons and adjacent metamorphic rocks are also ca. 60 Ma. Although early Tertiary magmatism occurred over a broad area in central Alaska, meta- morphism and ductile deformation accompanied that magmatism in this one zone only. Within the zone of deformation, pluton aureoles and metamorphic rocks display consistent NE-SW-stretching lineations parallel to the Victoria Creek fault, suggesting that deformation processes involved subhorizontal elongation of the package. The most deeply buried metamorphic rocks, kyanite-bearing metapelites, occur as lenses adjacent to the fault, which cuts the crust to the Moho (Beaudoin et al., 1997). Geochronologic data and field relationships suggest that the amount of early Tertiary exhumation was greatest adjacent to the Victoria Creek fault. The early Tertiary crustal-scale events that may have operated to produce transtension in this area are (1) increased heat flux and related bimodal within-plate magmatism, (2) movement on a releasing stepover within the Tintina fault system or on a regional scale involving both the Tintina and the Kobuk fault systems, and (3) oroclinal bending of the Tintina-Kaltag fault system with counterclockwise rotation of western Alaska. ?? 2007 The Geological Society of America. All rights reserved.

Composted oyster shell as lime fertilizer is more effective than fresh oyster shell.

PubMed

Lee, Young Han; Islam, Shah Md Asraful; Hong, Sun Joo; Cho, Kye Man; Math, Renukaradhya K; Heo, Jae Young; Kim, Hoon; Yun, Han Dae

2010-01-01

Physio-chemical changes in oyster shell were examined, and fresh and composted oyster shell meals were compared as lime fertilizers in soybean cultivation. Structural changes in oyster shell were observed by AFM and FE-SEM. We found that grains of the oyster shell surface became smoother and smaller over time. FT-IR analysis indicated the degradation of a chitin-like compound of oyster shell. In chemical analysis, pH (12.3+/-0.24), electrical conductivity (4.1+/-0.24 dS m(-1)), and alkaline powder (53.3+/-1.12%) were highest in commercial lime. Besides, pH was higher in composted oyster shell meal (9.9+/-0.53) than in fresh oyster shell meal (8.4+/-0.32). The highest organic matter (1.1+/-0.08%), NaCl (0.54+/-0.03%), and moisture (15.1+/-1.95%) contents were found in fresh oyster shell meal. A significant higher yield of soybean (1.33 t ha(-1)) was obtained by applying composted oyster shell meal (a 21% higher yield than with fresh oyster shell meal). Thus composting of oyster shell increases the utility of oyster shell as a liming material for crop cultivation.

Ecological value of submerged breakwaters for habitat enhancement on a residential scale.

PubMed

Scyphers, Steven B; Powers, Sean P; Heck, Kenneth L

2015-02-01

Estuarine shorelines have been degraded since humans arrived in the coastal zone. In recent history, a major cause of habitat degradation has been the armoring of shorelines with vertical walls to protect property from erosive wave energy; however, a lack of practical alternatives that maintain or enhance ecological function has limited the options of waterfront residents and coastal zone managers. We experimentally investigated the habitat value of two configurations of submerged breakwaters constructed along an eroding shoreline in northwest Mobile Bay, AL (USA). Breakwaters comprised of bagged oyster shell or Reef Ball™ concrete domes were built by a community-based restoration effort. Post-deployment monitoring found that: bagged oyster breakwaters supported much higher densities of live ribbed mussels than Reef Ball breakwaters; both breakwater configurations supported increased species richness of juvenile and smaller fishes compared to controls; and that larger fishes did not appear to be affected by breakwater presence. Our study demonstrates that ecologically degraded shorelines can be augmented with small-scale breakwaters at reasonable cost and that these complex structures can serve as habitat for filter-feeding bivalves, mobile invertebrates, and young fishes. Understanding the degree to which these structures mitigate erosive wave energy and protect uplands will require a longer time frame than our 2-year-long study.

Site evaluation for U.S. Bureau of Mines experimental oil-shale mine, Piceance Creek basin, Rio Blanco County, Colorado

USGS Publications Warehouse

Ege, John R.; Leavesley, G.H.; Steele, G.S.; Weeks, J.B.

1978-01-01

The U.S. Geological Survey is cooperating with the U.S. Bureau of Mines in the selection of a site for a shaft and experimental mine to be constructed in the Piceance Creek basin, Rio Blanco County, Colo. The Piceance Creek basin, an asymmetric, northwest-trending large structural downwarp, is located approximately 40 km (25 mi) west of the town of Meeker in Rio Blanco County, Colo. The oil-shale, dawsonite, nahcolite, and halite deposits of the Piceance Creek basin occur in the lacustrine Green River Formation of Eocene age. In the basin the Green River Formation comprises three members. In ascending order, they are the Douglas Creek, the Garden Gulch, and the Parachute Creek Members, Four sites are presented for consideration and evaluated on geology and hydrology with respect to shale-oil economics. Evaluated criteria include: (1) stratigraphy, (2) size of site, (3) oil-shale yield, (4) representative quantities of the saline minerals dawsonite and nahcolite, which must be present with a minimum amount of halite, (5) thickness of a 'leached' saline zone, (6) geologic structure, (7) engineering characteristics of rock, (8) representative surface and ground-water conditions, with emphasis on waste disposal and dewatering, and (9) environmental considerations. Serious construction and support problems are anticipated in sinking a deep shaft in the Piceance Creek basin. The two major concerns will be dealing with incompetent rock and large inflow of saline ground water, particularly in the leached zone. Engineering support problems will include stabilizing and hardening the rock from which a certain amount of ground water has been removed. The relative suitability of the four potential oil-shale experimental shaft sites in the Piceance Creek basin has been considered on the basis of all available geologic, hydrologic, and engineering data; site 2 is preferred to sites 1, 3, and 4, The units in this report are presented in the form: metric (English). Both units of measurement are necessary as measurements were taken in English units, and most of the contracting agencies involved are using predominantly English units.

Quantifying early 17th century changes in Chesapeake Bay estuarine carbon dynamics from James River, VA oyster geochemistry

NASA Astrophysics Data System (ADS)

Grimm, B. L.; Spero, H. J.; Harding, J. M.

2012-12-01

The first successful European colonization of North America occurred in 1607 following the arrival of English settlers at Jamestown, Virginia. Within a few decades, land use changes and clear-cutting farming practices dramatically altered the terrestrial landscape and removed the overlying canopy and stabilizing root network of the previously-dominant hardwood forests. The Eastern oyster, Crassostrea virginica, has inhabited the Chesapeake Bay since the end of the last deglaciation. During the start of the Jamestown Colony, an extensive drought (1606-1612) shifted James River salinity zones upriver, expanding the available oyster habitat to the vicinity of Jamestown. This allowed the colonists to collect and eat oysters from areas near the colony down to the river's entry into the bay, and later discard the shells in wells and trash pits that have recently been excavated. The oysters' calcium carbonate shells discovered in these deposits act as multi-year stationary recorders preserving the local environmental chemistry throughout their life until collection. Here we present δ13C, δ18O, and radiocarbon data from historical oyster shell hinge transects that encompass the time period between ~1609 and the early 1700s. Samples include shells from the 1609 Jamestown freshwater well and five additional sites, as well as modern shells collected in 2006. Because shell δ13C and radiocarbon (14C) reflect James River δ13CDIC, it is possible to document carbon source changes during this period of land use change. Our preliminary data suggest a decrease in ambient δ13CDIC of approximately 2‰ between just prior to 1609 conditions and the modern estuary. This is most likely due to an increase in isotopically light organic carbon loading into the river as water moves more rapidly through the terrestrial system. Radiocarbon reservoir ages will also be presented to better constrain carbon flow through the system during this period of disturbance. δ18O measurements from the same shells provide seasonal signals and also show an offset from modern that is consistent with drought conditions during the early 17th century. These high fidelity records allow for a direct, high-resolution comparison of the residence time of carbon in the environment immediately prior to European colonization and during the first century of land use change in mid-Atlantic North America.

The effect of snowmelt on the water quality of Filson Creek and Omaday Lake, northeastern Minnesota

USGS Publications Warehouse

Siegel, D.I.

1981-01-01

Sulfate concentration and pH were determined in surface water, groundwater, and precipitation samples collected in the Filson Creek watershed to evaluate the sources of sulfate in Filson Creek. During and immediately after snowmelt, sulfate concentrations in Filson Creek increased from about 2 to 14 mg/l. Concurrently, H+ ion activity increased from an average of 10−6.6 to 10−5.5. These changes suggest that sulfate acidity is concentrated in the snowpack at snowmelt, which is similar to changes reported in Scandinavia in areas subject to acid precipitation. Mass balance calculations indicate that the sulfate contribution from groundwater during snowmelt was minimal in comparison to that from snow. During base flow, sulfate did not appreciably increase from the headwaters of Filson Creek to the mouth, even though sulfate was as high as 58 mg/l in groundwater discharging to the creek from surficial materials overlying a sulfide-bearing mineralized zone in the lower third of the watershed. Approximately 10.6 kg of sulfate per hectare per year was retained in 1977.

Geochemical survey of the Lusk Creek Roadless Area, Pope County, Illinois

USGS Publications Warehouse

Klasner, John S.; Day, Gordon W.

1984-01-01

The Lusk Creek Roadless Area (Index map) lies along the western edge of the Illinois-Kentucky fluorspar district in which flourite deposits occur as lenticular-type veins emplaced along fult zones or as tratiform-shaped bedding-replacement deposits that occur along fault zones (Grogan and Bradbury, 1967; Trace, 1974). Although mineralogy varies between deposits, Trace (1974) points out that the principal minerals are fluorite (CaF) and calcite (CaCO3), and associated with these minerals are lesser amounts of sphalerite (ZnS), galena (PbS), and barite (BaSO4). Minor quantites of iron-rich dolomite (CaMg(CO3)2), pyrite (FeS2),  and alteration products of zinc, lead, and copper minerals also are found. 

Mormon cricket control in Utah's west desert - Evaluation of impacts of the pesticide Diflubenzuron on nontarget arthropod communities

USGS Publications Warehouse

Graham, Tim B.; Brasher, Anne M.D.; Close, Rebecca N.

2008-01-01

Grasshopper and Mormon cricket (Orthoptera) populations periodically build to extremely high numbers and can cause significant economic damage in rangelands and agricultural fields of the Great Plains and Intermountain West. A variety of insecticides have been applied to control population outbreaks, with recent efforts directed at minimizing impacts to nontarget fauna in treated ecosystems. A relatively new insecticide for control of Orthoptera is diflubenzuron, which acts to inhibit chitin production, ultimately causing death during the molt following ingestion of the insecticide. All arthropods, including insects, mites, and crustaceans, use chitin to build their exoskeletons and will die if they are unable to produce it during the next molt. Diflubenzuron is not taxon specific—it affects all arthropods that ingest it, except adult insects, which do not molt. Consequently, application of this pesticide has the potential to significantly reduce not only target populations but all terrestrial and aquatic arthropods within treatment zones.Some research has been done in the Great Plains on the impact of diflubenzuron on nontarget arthropods in the context of grasshopper-control programs, but no work has been done in the Great Basin in Mormon cricket-control areas. This study was instigated in anticipation of the need for extensive control of Orthoptera outbreaks in Utah’s west desert during 2005, and it was designed to sample terrestrial and aquatic arthropod communities in both treated and untreated zones. Three areas were sampled: Grouse Creek, Ibapah, and Vernon. High mortality of Mormon cricket eggs in the wet, cool spring of 2005 restricted the need to control Mormon crickets to Grouse Creek. Diflubenzuron was applied (aerial reduced agent-area treatment) in May 2005. Terrestrial and aquatic arthropod communities were sampled before and after application of diflubenzuron in the Grouse Creek area of northwestern Utah in May and June of 2005. In July 2005, U.S. Geological Survey scientists sampled areas in Ibapah and Vernon that had been treated with diflubenzuron in 2004, along with adjacent untreated areas. Pitfall traps at four treated and four untreated sites were used to collect ground-dwelling terrestrial arthropods. Semiquantitative sweep surveys of aquatic habitats were made before treatment, 2 weeks after treatment, and 4 months after treatment (after leaf fall) at Grouse Creek. One-year post-treatment samples were collected by using the same methods for terrestrial and aquatic arthropods at Ibapah and Vernon in July 2005 (treatments applied in June 2004).More than 124,000 terrestrial arthropods were collected from the three study areas, and more than 200,000 aquatic invertebrates were collected in the aquatic samples. Direct effects of diflubenzuron on aquatic and terrestrial arthropod communities were not apparent in our data from Grouse Creek. The treatment was designed to avoid spraying pesticide on water bodies, and no measurable effects on aquatic communities from either springs or streams were observed, with the exception of the reduction of taxa richness at Vernon (a result confounded by elevational differences in the treatment and nontreatment zones). Some trends indicate diflubenzuron may affect some terrestrial taxa. Ant communities showed some differences, with possible lag effects at Ibapah and Vernon. Forelius was more abundant, while Tapinoma and, perhaps, Formica declined in treated zones in these two study areas. Solenopsis also was more numerous at treated Ibapah sites but varied without pattern at Vernon. Scorpions were abundant at Grouse Creek and Ibapah but rare at Vernon. Numbers did not change during several weeks at Grouse Creek, but at Ibapah, numbers at treated sites were much lower than at untreated sites. The Lygaeidae (in the order Hemiptera) were more abundant in the untreated zones at Ibapah and Vernon, although significantly so only at Ibapah. Lygaeidae were absent from the treated zone at Grouse Creek (before and after treatment) but were present after treatment in the untreated zone. Additional research is recommended to determine more explicitly whether these taxa are sensitive to diflubenzuron applications in the Great Basin.

Paleogeographic implications of an erosional remnant of Paleogene rocks southwest of the Sur-Nacimiento Fault Zone, southern Coast Ranges, California

USGS Publications Warehouse

Vedder, J.G.; McLean, H.; Stanley, R.G.; Wiley, T.J.

1991-01-01

A small tract of heretofore-unrecognized Paleogene rocks lies about 30 km northeast of Santa Maria and 1 km southwest of the Sur-Nacimiento fault zone near upper Pine Creek. This poorly exposed assemblage of rocks is less than 50 m thick, lies unconformably on regionally distributed Upper Cretaceous submarine-fan deposits, and consists of three units: fossiliferous lower Eocene mudstone, Oligocene(?) conglomerate, and basaltic andesite that has a radiometric age of 26.6 ?? 0.5 Ma. Both the sedimentary and igneous constituents in the Paleogene sequence are unlike those of known sequences on either side of the Sur-Nacimiento fault zone. The Paleogene sedimentary rocks near upper Pine Creek presumably are remnants of formerly widespread early Eocene bathyal deposits and locally distributed Oligocene(?) fluvial deposits southwest of the fault zone. The 26.6 Ma basaltic andesite, however, may not have extended much beyond its present outcrops. An episode of Oligocene(?) displacement is required by the contrast in thicknesses, depositional patterns, and paleobathymetry of the juxtaposed rock sequences. -from Authors

Living Shorelines: Assessing Geomorphic Change and Water Quality in an Urban Waterway

NASA Astrophysics Data System (ADS)

Huggins, A.; Schwartz, M. C.; Schmutz, P. P.

2017-12-01

In recent years, alternative strategies for shoreline armoring have become increasingly popular with coastal property owners. In Northwest Florida, local agencies implemented plans to attenuate wave action and reduce landward shore recession in an urban bayou by installing living shorelines. Living shorelines are constructed in the inter-tidal zones and incorporate both hard and soft structured stabilization. Generally, the hard component is fossilized oyster shells and the soft component is planted intertidal vegetation, such as Spartina alterniflora (Smooth cordgrass) and Juncus roemererianus (Black needlerush). Living shorelines were intended to comprise both ecological and societal implications by significantly slowing erosion processes for property owners, by utilizing oyster beds to improve water quality, and by fostering new ecological habitats in the marsh grasses. The issue presented with living shoreline management is long-term studies have not been carried out on these engineered systems. For this study, geospatial technology was utilized to create 3D images of terrain by interpolation of data points using a TotalStation to compute geomorphic change. Additionally, water samples were analyzed using traditional wet chemistry laboratory methods to determine total oxidized nitrogen (TON), ammonium, and orthophosphate content in water. Over a short three-month preliminary study, sediment accretion was observed primarily within the vegetation with the bulk of the erosion occurring around the oyster beds. TON was detected at levels between 10 µM and 30 µM, ammonium up to 5 µM, and orthophosphate was only detected in very low levels, consistently < 2 µM. The project is in its infancy, as the topographic profiles and water quality data will be used to establish baseline data for future research to determine volumetric geomorphic change,and to set a standard for water quality trends, surrounding oyster beds and vegetation in response to climatic events.

Reconnaissance investigation of high-calcium marble in the Beaver Creek area, St. Lawrence County, New York

USGS Publications Warehouse

Brown, C. Ervin

1978-01-01

Three belts of marble of the Grenville Series were mapped in the Beaver Creek drainage basin, St. Lawrence County, N.Y. One of these, on the west side of Beaver Creek, consists of coarsely crystalline pure calcitic marble that occurs in a zone at least 10 by 0.8 km in extent. Samples of marble show CaCO3 content to be greater than 93 percent, and some samples contain greater than 96 percent, and only small amounts of MgO and Fe203 are present. Marble in two other belts to the east of Beaver Creek are variable in composition, but locally have high content of calcium carbonate material. The marble deposit west of Beaver Creek has a chemical composition favorable for specialized chemical, industrial, and metallurgical uses. Another favorable aspect of the deposit is its proximity to inexpensive water transportation on the St. Lawrence Seaway only 27.5 km away by road, at Ogdensburg, N.Y.

Persistence of Caliciviruses in Artificially Contaminated Oysters during Depuration▿

PubMed Central

Ueki, You; Shoji, Mika; Suto, Atsushi; Tanabe, Toru; Okimura, Yoko; Kikuchi, Yoshihiko; Saito, Noriyuki; Sano, Daisuke; Omura, Tatsuo

2007-01-01

The fate of calicivirus in oysters in a 10-day depuration was assessed. The norovirus gene was persistently detected from artificially contaminated oysters during the depuration, whereas feline calicivirus in oysters was promptly eliminated. The prolonged observation of norovirus in oysters implies the existence of a selective retention mechanism for norovirus within oysters. PMID:17630304

The constructed catchment Chicken Creek as Critical Zone Observatory under transition

NASA Astrophysics Data System (ADS)

Gerwin, Werner; Schaaf, Wolfgang; Elmer, Michael; Hinz, Christoph

2014-05-01

The constructed catchment Chicken Creek was established in 2005 as an experimental landscape laboratory for ecosystem research. The 6 ha area with clearly defined horizontal as well as vertical boundary conditions was left for an unrestricted primary succession. All Critical Zone elements are represented at this site, which allows the study of most processes occurring at the interface of bio-, pedo-, geo- and hydrosphere. It provides outstanding opportunities for investigating interactions and feedbacks between different evolving compartments during ecosystem development. The catchment is extensively instrumented since 2005 in order to detect transition stages of the ecosystem. Data recorded with a high spatial and temporal resolution include hydrological, geomorphological, pedological, limnological as well as biological parameters. In contrast to other Critical Zone Observatories, this site offers the unique situation of an early stage ecosystem with highly dynamic system properties. The first years of development were characterized by a fast formation of geomorphological structures due to massive erosion processes at the initially non-vegetated surface. Hydrological processes led to the establishment of a local groundwater body within 5 years. In the following years the influence of biological structures like vegetation patterns gained an increasing importance. Feedbacks between developing vegetation and e.g. hydrological features became more and more dominant. As a result, different phases of ecosystem development could be distinguished until now. This observatory offers manifold possibilities to identify and disentangle complex interactions between Critical Zone processes in situ under natural conditions. The originally low complexity of the system is growing with time facilitating the identification of influences of newly developing structures on system functions. Thus, it is possible to study effects of small-scale processes on the whole system at the landscape scale. In addition, the highly dynamic initial system properties allow the observation of multifaceted changes of Critical Zone properties and functions within short periods of time. Chicken Creek could complement the existing network of Critical Zone Observatories which are usually established at ecosystems in a mature state.

High-pressure treatment for shelf-life extension and quality improvement of oysters cooked in a traditional Taiwanese oyster omelet.

PubMed

Lai, Kung-Ming; Chi, Hsin-Yi; Hsu, Kuo-Chiang

2010-01-01

Whole oysters were processed using high-pressure (HP) treatment at 250 and 300 MPa for 0 to 10 min and stored at 4 degrees Celsius for up to 28 days. HP-treated oysters and untreated oysters were evaluated for lipid oxidation, growth of microorganisms, and sensory characteristics after cooking at 160 degrees Celsius for 90 s. Microbial counts after HP treatment revealed that the bacterial load was initially reduced at all pressures. HP-treated oysters had significantly higher pH and moisture (P < 0.05) relative to control (untreated) oysters during storage. HP treatment increased lipid oxidation with unpleasant odor during storage compared with the control. HP treatment decreased redness but did not significantly affect the brightness and yellowness of cooked oysters. From tests of mechanical properties, 300 MPa-treated oysters after cooking had significantly increased toughness as measured by cutting force. HP-treated oysters after cooking received higher quality scores than did the control during the storage trial. Results indicated that 300 MPa for 2 min is the optimum HP treatment that results in oysters most acceptable for oyster omelets during storage at 4 degrees Celsius, and this treatment may extend the shelf life of these oysters to 21 days.

The hot oyster: levels of virulent Vibrio parahaemolyticus strains in individual oysters.

PubMed

Klein, Savannah L; Lovell, Charles R

2017-02-01

Vibrio parahaemolyticus is the leading cause of seafood-associated gastroenteritis and is most commonly transmitted by raw oysters. Consequently, detection of virulent strains of this organism in oysters is a primary concern for seafood safety. Vibrio parahaemolyticus levels were determined in 110 individual oysters harvested from two sampling sites in SC, USA. The majority of oysters (98%) contained low levels of presumptive V. parahaemolyticus However, two healthy oysters contained presumptive V. parahaemolyticus numbers that were unusually high. These two 'hot' oysters contained levels of presumptive V. parahaemolyticus within the gills that were ∼100-fold higher than the average for other oysters collected at the same date and location. Current V. parahaemolyticus detection practices require homogenizing a dozen oysters pooled together to determine V. parahaemolyticus numbers, a procedure that would dilute out V. parahaemolyticus in these 'hot' oysters. This study demonstrates the variability of V. parahaemolyticus densities taken from healthy, neighboring individual oysters in the environment. Additionally, environmental V parahaemolyticus isolates were screened for the virulence-related genes, tdh and trh, using improved polymerase chain reaction primers and protocols. We detected these genes, previously thought to be rare in environmental isolates, in approximately half of the oyster isolates. © FEMS 2016. All rights reserved. For permissions, please e-mail: journals.permissions@oup.com.

The Quantification and Evolution of Resilience in Integrated Coastal Systems

DTIC Science & Technology

2012-08-01

for natural protection when protective beaches and sand dunes are destroyed or overtopped. Protects a beach or sand dune that fronts backshore from...dredged material on a beach, dune , barrier island, or sand berm located in the near- shore zone. Stabilize the location of an eroding beach, dune ...waves will erode beaches and dunes . Table 5. Components and processes that are part of an ecosystem restoration subsystem defined by an oyster

Transcriptome of American oysters, Crassostrea virginica, in response to bacterial challenge: insights into potential mechanisms of disease resistance.

PubMed

McDowell, Ian C; Nikapitiya, Chamilani; Aguiar, Derek; Lane, Christopher E; Istrail, Sorin; Gomez-Chiarri, Marta

2014-01-01

The American oyster Crassostrea virginica, an ecologically and economically important estuarine organism, can suffer high mortalities in areas in the Northeast United States due to Roseovarius Oyster Disease (ROD), caused by the gram-negative bacterial pathogen Roseovarius crassostreae. The goals of this research were to provide insights into: 1) the responses of American oysters to R. crassostreae, and 2) potential mechanisms of resistance or susceptibility to ROD. The responses of oysters to bacterial challenge were characterized by exposing oysters from ROD-resistant and susceptible families to R. crassostreae, followed by high-throughput sequencing of cDNA samples from various timepoints after disease challenge. Sequence data was assembled into a reference transcriptome and analyzed through differential gene expression and functional enrichment to uncover genes and processes potentially involved in responses to ROD in the American oyster. While susceptible oysters experienced constant levels of mortality when challenged with R. crassostreae, resistant oysters showed levels of mortality similar to non-challenged oysters. Oysters exposed to R. crassostreae showed differential expression of transcripts involved in immune recognition, signaling, protease inhibition, detoxification, and apoptosis. Transcripts involved in metabolism were enriched in susceptible oysters, suggesting that bacterial infection places a large metabolic demand on these oysters. Transcripts differentially expressed in resistant oysters in response to infection included the immune modulators IL-17 and arginase, as well as several genes involved in extracellular matrix remodeling. The identification of potential genes and processes responsible for defense against R. crassostreae in the American oyster provides insights into potential mechanisms of disease resistance.

Transcriptome of American Oysters, Crassostrea virginica, in Response to Bacterial Challenge: Insights into Potential Mechanisms of Disease Resistance

PubMed Central

McDowell, Ian C.; Nikapitiya, Chamilani; Aguiar, Derek; Lane, Christopher E.; Istrail, Sorin; Gomez-Chiarri, Marta

2014-01-01

The American oyster Crassostrea virginica, an ecologically and economically important estuarine organism, can suffer high mortalities in areas in the Northeast United States due to Roseovarius Oyster Disease (ROD), caused by the gram-negative bacterial pathogen Roseovarius crassostreae. The goals of this research were to provide insights into: 1) the responses of American oysters to R. crassostreae, and 2) potential mechanisms of resistance or susceptibility to ROD. The responses of oysters to bacterial challenge were characterized by exposing oysters from ROD-resistant and susceptible families to R. crassostreae, followed by high-throughput sequencing of cDNA samples from various timepoints after disease challenge. Sequence data was assembled into a reference transcriptome and analyzed through differential gene expression and functional enrichment to uncover genes and processes potentially involved in responses to ROD in the American oyster. While susceptible oysters experienced constant levels of mortality when challenged with R. crassostreae, resistant oysters showed levels of mortality similar to non-challenged oysters. Oysters exposed to R. crassostreae showed differential expression of transcripts involved in immune recognition, signaling, protease inhibition, detoxification, and apoptosis. Transcripts involved in metabolism were enriched in susceptible oysters, suggesting that bacterial infection places a large metabolic demand on these oysters. Transcripts differentially expressed in resistant oysters in response to infection included the immune modulators IL-17 and arginase, as well as several genes involved in extracellular matrix remodeling. The identification of potential genes and processes responsible for defense against R. crassostreae in the American oyster provides insights into potential mechanisms of disease resistance. PMID:25122115

Recent (2008-10) concentrations and isotopic compositions of nitrate and concentrations of wastewater compounds in the Barton Springs zone, south-central Texas, and their potential relation to urban development in the contributing zone

USGS Publications Warehouse

Mahler, Barbara J.; Musgrove, MaryLynn; Herrington, Chris; Sample, Thomas L.

2011-01-01

During 2008–10, the U.S. Geological Survey, in cooperation with the City of Austin, the City of Dripping Springs, the Barton Springs/Edwards Aquifer Conservation District, the Lower Colorado River Authority, Hays County, and Travis County, collected and analyzed water samples from five streams (Barton, Williamson, Slaughter, Bear, and Onion Creeks), two groundwater wells (Marbridge well [YD–58–50–704] and Buda well [LR–58–58–403]), and the main orifice of Barton Springs in Austin, Texas, with the objective of characterizing concentrations and isotopic compositions of nitrate and concentrations of wastewater compounds in the Barton Springs zone. The Barton Springs zone is in south-central Texas, an area undergoing rapid growth in population and in land area affected by development, with associated increases in wastewater generation. Over a period of 17 months, during which the hydrologic conditions transitioned from dry to wet, samples were collected routinely from the streams, wells, and spring and, in response to storms, from the streams and spring; some or all samples were analyzed for nitrate, nitrogen and oxygen isotopes of nitrate, and waste­water compounds. The median nitrate concentrations in routine samples from all sites were higher in samples collected during the wet period than in samples collected during the dry period, with the greatest difference for stream samples (0.05 milligram per liter during the dry period to 0.96 milligram per liter for the wet period). Nitrate concentrations in recent (2008–10) samples were elevated relative to concentrations in historical (1990–2008) samples from streams and from Barton Springs under medium- and high-flow conditions. Recent nitrate concentrations were higher than historical concentrations at the Marbridge well but the reverse was true at the Buda well. The elevated concentrations likely are related to the cessation of dry conditions coupled with increased nitrogen loading in the contributing watersheds. An isotopic composition of nitrate (delta nitrogen–15) greater than 8 per mil in many of the samples indicated there was a contribution of nitrate with a biogenic (human and or animal waste, or both) origin. Wastewater compounds measured in routine samples were detected infrequently (3 percent of cases), and concentrations were very low (less than the method reporting level in most cases). There was no correlation between nitrate concentrations and the frequency of detection of wastewater compounds, indicating that wastewater compounds might be undergoing removal during such processes as infiltration through soil. Three potential sources of biogenic nitrate to the contributing zone were considered: septic systems, land application of treated wastewater, and domesticated dogs and cats. During 2001–10, the estimated densities of septic systems and domesticated dogs and cats (number per acre) increased in the watersheds of all five creeks, and the rate of land application of treated wastewater (gallons per day per acre) increased in the watersheds of Barton, Bear, and Onion Creeks. Considering the timing and location of the increases in the three sources, septic systems were considered a likely source of increased nitrate to Bear Creek; land application of treated wastewater a likely source to Barton, Bear, and Onion Creeks; and domestic dogs and cats a potential source principally to Williamson Creek. The results of this investigation indicate that baseline water quality, in terms of nitrate, has shifted upward between 2001 and 2010, even without any direct discharges of treated wastewater to the creeks.

Suspension of oysters reduces the populations of Vibrio parahaemolyticus and Vibrio vulnificus.

PubMed

Cole, K M; Supan, J; Ramirez, A; Johnson, C N

2015-09-01

Vibrio parahaemolyticus (Vp) and Vibrio vulnificus (Vv) are associated with the consumption of raw oysters and cause illnesses ranging from simple gastroenteritis to life-threatening septicaemia. These halophilic bacteria are frequently found in marine and estuarine systems, accumulating within the tissues of a number of aquatic organisms and passing on to humans after consumption, through contaminated water, or via open wounds. As benthic organisms capable of filtering 40 gallons of water per hour, sediment is an important source of potentially pathogenic vibrios in oysters destined for raw consumption. This research used off-bottom oyster culture to reduce vibrio concentrations in oysters. Colony hybridization was used to enumerate Vp and Vv in bottom and suspended oysters. Vv and Vp concentrations were generally lower in oysters suspended off-bottom, and suspension decreased vibrio loads in oysters by an average of 13%. Suspension of oysters reduced vibrio concentrations. This study found that oyster suspension significantly reduced some populations of potentially pathogenic vibrios. These results indicate that oyster suspension could be a viable approach for preharvest treatment to reduce illness in consumers of raw oysters. © 2015 The Society for Applied Microbiology.

Zooming in on aquatic denitrification hot spots

NASA Astrophysics Data System (ADS)

Schultz, Colin

2011-06-01

Inorganic nitrogen is an important resource for marine and aquatic ecosystems, acting as a fertilizer for phytoplankton and aquatic plants. When nitrogen concentrations soar, algae blooms can occur. Subsequently, when the algae blooms die, their decomposition can consume most of the available dissolved oxygen, negatively affecting the ecosystem as a whole. Creeks and streams act as strong controls, regulating downstream nitrogen concentrations, and researchers have been zooming in on hyporheic zones—zones where water flows through the sediment alongside the surface water—as possible hot spots of activity in the nitrogen cycle. Using a stable isotope tracer, Zarnetske et al. tracked the evolution of a nitrogen addition as it flowed through a heavily instrumented gravel bar in Drift Creek, in Oregon. The researchers found that the gravel bar could act as either a source or a sink of inorganic nitrogen, depending on how long it took for the water to make its way through the bar. When the creek water took longer to pass through the hyporheic zone, nitrogen levels were reduced significantly through denitrification, while any water that traveled quickly could have its inorganic nitrogen concentrations increased by nitrification. The authors note that a context-dependent effect of individual hyporheic zones on inorganic nitrogen concentrations could have important implications for attempts to estimate the effects of a watershed on the nitrogen cycle. (Journal of Geophysical Research-Biogeosciences, doi:10.1029/ 2010JG001356, 2011)

Groundwater-surface water interaction in the riparian zone of an incised channel, Walnut Creek, Iowa

USGS Publications Warehouse

Schilling, K.E.; Li, Z.; Zhang, Y.-K.

2006-01-01

Riparian zones of many incised channels in agricultural regions are cropped to the channel edge leaving them unvegetated for large portions of the year. In this study we evaluated surface and groundwater interaction in the riparian zone of an incised stream during a spring high flow period using detailed stream stage and hydraulic head data from six wells, and water quality sampling to determine whether the riparian zone can be a source of nitrate pollution to streams. Study results indicated that bank storage of stream water from Walnut Creek during a large storm water runoff event was limited to a narrow 1.6 m zone immediately adjacent to the channel. Nitrate concentrations in riparian groundwater were highest near the incised stream where the unsaturated zone was thickest. Nitrate and dissolved oxygen concentrations and nitrate-chloride ratios increased during a spring recharge period then decreased in the latter portion of the study. We used MODFLOW and MT3DMS to evaluate dilution and denitrification processes that would contribute to decreasing nitrate concentrations in riparian groundwater over time. MT3DMS model simulations were improved with a denitrification rate of 0.02 1/d assigned to the floodplain sediments implying that denitrification plays an important role in reducing nitrate concentrations in groundwater. We conclude that riparian zones of incised channels can potentially be a source of nitrate to streams during spring recharge periods when the near-stream riparian zone is largely unvegetated. ?? 2005 Elsevier B.V. All rights reserved.

Three-Dimensional Geologic Model of Complex Fault Structures in the Upper Seco Creek Area, Medina and Uvalde Counties, South-Central Texas

USGS Publications Warehouse

Pantea, Michael P.; Cole, James C.; Smith, Bruce D.; Faith, Jason R.; Blome, Charles D.; Smith, David V.

2008-01-01

This multimedia report shows and describes digital three-dimensional faulted geologic surfaces and volumes of the lithologic units of the Edwards aquifer in the upper Seco Creek area of Medina and Uvalde Counties in south-central Texas. This geologic framework model was produced using (1) geologic maps and interpretations of depositional environments and paleogeography; (2) lithologic descriptions, interpretations, and geophysical logs from 31 drill holes; (3) rock core and detailed lithologic descriptions from one drill hole; (4) helicopter electromagnetic geophysical data; and (5) known major and minor faults in the study area. These faults were used because of their individual and collective effects on the continuity of the aquifer-forming units in the Edwards Group. Data and information were compared and validated with each other and reflect the complex relationships of structures in the Seco Creek area of the Balcones fault zone. This geologic framework model can be used as a tool to visually explore and study geologic structures within the Seco Creek area of the Balcones fault zone and to show the connectivity of hydrologic units of high and low permeability between and across faults. The software can be used to display other data and information, such as drill-hole data, on this geologic framework model in three-dimensional space.

33 CFR 334.430 - Neuse River and tributaries at Marine Corps Air Station Cherry Point, North Carolina; restricted...

Code of Federal Regulations, 2010 CFR

2010-07-01

... Marine Corps Air Station Cherry Point, North Carolina; restricted area and danger zone. 334.430 Section... Air Station Cherry Point, North Carolina; restricted area and danger zone. (a) The restricted area... Station, Cherry Point, North Carolina, extending from the mouth of Hancock Creek to a point approximately...

Recovery of the Chaparral Riparian Zone After Wildfire

Treesearch

Frank W. Davis; Edward A. Keller; Anuja Parikh; Joan Florsheim

1989-01-01

After the Wheeler Fire in southern California in July 1985, we monitored sediment deposition and vegetation recovery in a section of the severely burned chaparral riparian zone of the North Fork of Matilija Creek, near Ojai, California. Increased runoff was accompanied by low magnitude debris flows and fluvial transport of gravel, most of which was added to the channel...

Molecular Epidemiology of Oyster-Related Human Noroviruses and Their Global Genetic Diversity and Temporal-Geographical Distribution from 1983 to 2014

PubMed Central

Yu, Yongxin; Cai, Hui; Hu, Linghao; Lei, Rongwei; Pan, Yingjie; Yan, Shuling

2015-01-01

Noroviruses (NoVs) are a leading cause of epidemic and sporadic cases of acute gastroenteritis worldwide. Oysters are well recognized as the main vectors of environmentally transmitted NoVs, and disease outbreaks linked to oyster consumption have been commonly observed. Here, to quantify the genetic diversity, temporal distribution, and circulation of oyster-related NoVs on a global scale, 1,077 oyster-related NoV sequences deposited from 1983 to 2014 were downloaded from both NCBI GenBank and the NoroNet outbreak database and were then screened for quality control. A total of 665 sequences with reliable information were obtained and were subsequently subjected to genotyping and phylogenetic analyses. The results indicated that the majority of oyster-related NoV sequences were obtained from coastal countries and regions and that the numbers of sequences in these regions were unevenly distributed. Moreover, >80% of human NoV genotypes were detected in oyster samples or oyster-related outbreaks. A higher proportion of genogroup I (GI) (34%) was observed for oyster-related sequences than for non-oyster-related outbreaks, where GII strains dominated with an overwhelming majority of >90%, indicating that the prevalences of GI and GII are different in humans and oysters. In addition, a related convergence of the circulation trend was found between oyster-related NoV sequences and human pandemic outbreaks. This suggests that oysters not only act as a vector of NoV through environmental transmission but also serve as an important reservoir of human NoVs. These results highlight the importance of oysters in the persistence and transmission of human NoVs in the environment and have important implications for the surveillance of human NoVs in oyster samples. PMID:26319869

Inhibition of 4NQO-Induced Oral Carcinogenesis by Dietary Oyster Shell Calcium

PubMed Central

Chen, Ying; Jiang, Yi; Liao, Liyan; Zhu, Xiaoxin; Tang, Shengan; Yang, Qing; Sun, Lihua; Li, Yujie; Gao, Shuangrong; Xie, Zhongjian

2015-01-01

Oyster has gained much attention recently for its anticancer activity but it is unclear whether calcium, the major antitumor ingredient in oyster shell, is responsible for the anticarcinogenic role of the oyster. To address this issue, C57BL/6 mice were fed with the carcinogen 4-nitroquinoline-1-oxide (4NQO, 50 µg/mL) and normal diet or a diet containing oyster powder, oyster calcium, or calcium depleted oyster powder. The tongue tissue specimens isolated from these mice were histologically evaluated for hyperplasia, dysplasia, and papillary lesions, and then analyzed for proliferation and differentiation markers by immunohistochemistry. The results showed that mice on the diet containing oyster calcium significantly reduced rates of tumors in the tongue and proliferation and enhanced differentiation in the oral epithelium compared with the diet containing calcium depleted oyster powder. These results suggest that calcium in oyster plays a critical role in suppressing formation of oral squamous cell carcinoma and proliferation and promoting differentiation of the oral epithelium. PMID:26293805

Inducible defenses in Olympia oysters in response to an invasive predator.

PubMed

Bible, Jillian M; Griffith, Kaylee R; Sanford, Eric

2017-03-01

The prey naiveté hypothesis suggests that native prey may be vulnerable to introduced predators because they have not evolved appropriate defenses. However, recent evidence suggests that native prey sometimes exhibit induced defenses to introduced predators, as a result of rapid evolution or other processes. We examined whether Olympia oysters (Ostrea lurida) display inducible defenses in the presence of an invasive predator, the Atlantic oyster drill (Urosalpinx cinerea), and whether these responses vary among oyster populations from estuaries with and without this predator. We spawned oysters from six populations distributed among three estuaries in northern California, USA, and raised their offspring through two generations under common conditions to minimize effects of environmental history. We exposed second-generation oysters to cue treatments: drills eating oysters, drills eating barnacles, or control seawater. Oysters from all populations grew smaller shells when exposed to drill cues, and grew thicker and harder shells when those drills were eating oysters. Oysters exposed to drills eating other oysters were subsequently preyed upon at a slower rate. Although all oyster populations exhibited inducible defenses, oysters from the estuary with the greatest exposure to drills grew the smallest shells suggesting that oyster populations have evolved adaptive differences in the strength of their responses to predators. Our findings add to a growing body of literature that suggests that marine prey may be less likely to exhibit naiveté in the face of invasive predators than prey in communities that are more isolated from native predators, such as many freshwater and terrestrial island ecosystems.

Assessment of soil-gas and soil contamination at the South Prong Creek Disposal Area, Fort Gordon, Georgia, 2009-2010

USGS Publications Warehouse

Caldwell, Andral W.; Falls, W. Fred; Guimaraes, Wladmir B.; Ratliff, W. Hagan; Wellborn, John B.; Landmeyer, James E.

2011-01-01

Soil gas and soil were assessed for contaminants at the South Prong Creek Disposal Area at Fort Gordon, Georgia, from October 2009 to September 2010. The assessment included identifying and delineating organic contaminants present in soil-gas and inorganic contaminants present in soil samples collected from the area estimated to be the South Prong Creek Disposal Area, including two seeps and the hyporheic zone. This assessment was conducted to provide environmental contamination data to Fort Gordon personnel pursuant to requirements for the Resource Conservation and Recovery Act Part B Hazardous Waste Permit process. All soil-gas samplers in the two seeps and the hyporheic zone contained total petroleum hydrocarbons above the method detection level. The highest total petroleum hydrocarbon concentration detected from the two seeps was 54.23 micrograms per liter, and the highest concentration in the hyporheic zone was 344.41 micrograms per liter. The soil-gas samplers within the boundary of the South Prong Creek Disposal Area and along the unnamed road contained total petroleum hydrocarbon mass above the method detection level. The highest total petroleum hydrocarbon mass detected was 147.09 micrograms in a soil-gas sampler near the middle of the unnamed road that traverses the South Prong Creek Disposal Area. The highest undecane mass detected was 4.48 micrograms near the location of the highest total petroleum hydrocarbon mass. Some soil-gas samplers detected undecane mass greater than the method detection level of 0.04 micrograms, with the highest detection of toluene mass of 109.72 micrograms in the same location as the highest total petroleum hydrocarbon mass. Soil-gas samplers installed in areas of high contaminant mass had no detections of explosives and chemical agents above their respective method detection levels. Inorganic concentrations in five soil samples did not exceed regional screening levels established by the U.S. Environmental Protection Agency. Barium concentrations, however, were up to four times higher than the background concentrations reported in similar Coastal Plain sediments of South Carolina.

Millennial-scale sustainability of the Chesapeake Bay Native American oyster fishery

PubMed Central

Rick, Torben C.; Reeder-Myers, Leslie A.; Hofman, Courtney A.; Breitburg, Denise; Lockwood, Rowan; Henkes, Gregory; Kellogg, Lisa; Lowery, Darrin; Luckenbach, Mark W.; Mann, Roger; Ogburn, Matthew B.; Southworth, Melissa; Wah, John; Wesson, James; Hines, Anson H.

2016-01-01

Estuaries around the world are in a state of decline following decades or more of overfishing, pollution, and climate change. Oysters (Ostreidae), ecosystem engineers in many estuaries, influence water quality, construct habitat, and provide food for humans and wildlife. In North America’s Chesapeake Bay, once-thriving eastern oyster (Crassostrea virginica) populations have declined dramatically, making their restoration and conservation extremely challenging. Here we present data on oyster size and human harvest from Chesapeake Bay archaeological sites spanning ∼3,500 y of Native American, colonial, and historical occupation. We compare oysters from archaeological sites with Pleistocene oyster reefs that existed before human harvest, modern oyster reefs, and other records of human oyster harvest from around the world. Native American fisheries were focused on nearshore oysters and were likely harvested at a rate that was sustainable over centuries to millennia, despite changing Holocene climatic conditions and sea-level rise. These data document resilience in oyster populations under long-term Native American harvest, sea-level rise, and climate change; provide context for managing modern oyster fisheries in the Chesapeake Bay and elsewhere around the world; and demonstrate an interdisciplinary approach that can be applied broadly to other fisheries. PMID:27217572

Reductions of Vibrio parahaemolyticus in Pacific oysters (Crassostrea gigas) by depuration at various temperatures.

PubMed

Phuvasate, Sureerat; Chen, Ming-Hui; Su, Yi-Cheng

2012-08-01

Consumption of raw oysters has been linked to several outbreaks of Vibrio parahaemolyticus infection in the United States. This study investigated effects of ice storage and UV-sterilized seawater depuration at various temperatures on reducing V. parahaemolyticus in oysters. Raw Pacific oysters (Crassostrea gigas) were inoculated with a mixed culture of five clinical strains of V. parahaemolyticus (10290, 10292, 10293, BE 98-2029 and 027-1c1) at levels of 10⁴⁻⁶ MPN/g. Inoculated oysters were either stored in ice or depurated in recirculating artificial seawater at 2, 3, 7, 10, 12.5, and 15 °C for 4-6 days. Holding oysters in ice or depuration of oysters in recirculating seawater at 2 or 3 °C for 4 days did not result in significant reductions (P > 0.05) of V. parahaemolyticus in the oysters. However, depuration at temperatures between 7 and 15 °C reduced V. parahaemolyticus populations in oysters by >3.0 log MPN/g after 5 days with no loss of oysters. Depuration at refrigerated temperatures (7-15 °C) can be applied as a post-harvest treatment for reducing V. parahaemolyticus in Pacific oysters. Copyright © 2012 Elsevier Ltd. All rights reserved.

Millennial-scale sustainability of the Chesapeake Bay Native American oyster fishery.

PubMed

Rick, Torben C; Reeder-Myers, Leslie A; Hofman, Courtney A; Breitburg, Denise; Lockwood, Rowan; Henkes, Gregory; Kellogg, Lisa; Lowery, Darrin; Luckenbach, Mark W; Mann, Roger; Ogburn, Matthew B; Southworth, Melissa; Wah, John; Wesson, James; Hines, Anson H

2016-06-07

Estuaries around the world are in a state of decline following decades or more of overfishing, pollution, and climate change. Oysters (Ostreidae), ecosystem engineers in many estuaries, influence water quality, construct habitat, and provide food for humans and wildlife. In North America's Chesapeake Bay, once-thriving eastern oyster (Crassostrea virginica) populations have declined dramatically, making their restoration and conservation extremely challenging. Here we present data on oyster size and human harvest from Chesapeake Bay archaeological sites spanning ∼3,500 y of Native American, colonial, and historical occupation. We compare oysters from archaeological sites with Pleistocene oyster reefs that existed before human harvest, modern oyster reefs, and other records of human oyster harvest from around the world. Native American fisheries were focused on nearshore oysters and were likely harvested at a rate that was sustainable over centuries to millennia, despite changing Holocene climatic conditions and sea-level rise. These data document resilience in oyster populations under long-term Native American harvest, sea-level rise, and climate change; provide context for managing modern oyster fisheries in the Chesapeake Bay and elsewhere around the world; and demonstrate an interdisciplinary approach that can be applied broadly to other fisheries.

Bactericidal effects of wine on Vibrio parahaemolyticus in oysters.

PubMed

Liu, Chengchu; Chen, Ruiying; Su, Yi-Cheng

2006-08-01

The bactericidal effects of wines on Vibrio parahaemolyticus in oysters were studied to evaluate potential inactivation of V. parahaemolyticus in contaminated oysters by wine consumption. Shucked whole oyster and oyster meat homogenate were inoculated with V. parahaemolyticus and mixed with red or white wine. Survivals of V. parahaemolyticus in inoculated oysters were determined at 7 and 25 degrees C. Populations of V. parahaemolyticus in inoculated whole oysters (5.52 log most probable number [MPN] per g) decreased slightly to 4.90 log MPN/g (a 0.62-log reduction) after 24 h at 7 degrees C but increased to 7.37 log MPN/g over the same period at 25 degrees C. However, the populations in wine-treated whole oysters decreased by >1.7 and >1.9 log MPN/g after 24 h at 7 and 25 degrees C, respectively. Both red and white wines were more effective in inactivating V. parahaemolyticus in oyster meat homogenate than in whole oyster. Populations of V. parahaemolyticus in oyster meat homogenate (7.8 x 10(3) MPN/g) decreased rapidly to nondetectable levels (< 3 MPN/g) after 30 min of mixing with wine at 25 degrees C (a 3.89-log MPN/g reduction). These results suggest that chewing oysters before swallowing when eating raw oysters may result in greater inactivation of V. parahaemolyticus if wine is consumed. More studies are needed to determine the bactericidal effects of wine on V. parahaemolyticus in the complicated stomach environment.

Reconstructing early 17th century estuarine drought conditions from Jamestown oysters.

PubMed

Harding, Juliana M; Spero, Howard J; Mann, Roger; Herbert, Gregory S; Sliko, Jennifer L

2010-06-08

Oysters (Crassostrea virginica) were a central component of the Chesapeake Bay ecosystem in 1607 when European settlers established Jamestown, VA, the first permanent English settlement in North America. These estuarine bivalves were an important food resource during the early years of the James Fort (Jamestown) settlement while the colonists were struggling to survive in the face of inadequate supplies and a severe regional drought. Although oyster shells were discarded as trash after the oysters were eaten, the environmental and ecological data recorded in the bivalve geochemistry during shell deposition remain intact over centuries, thereby providing a unique window into conditions during the earliest Jamestown years. We compare oxygen isotope data from these 17th century oyster shells with modern shells to quantify and contrast estuarine salinity, season of oyster collection, and shell provenance during Jamestown colonization (1609-1616) and the 21st century. Data show that oysters were collected during an extended drought between fall 1611 and summer 1612. The drought shifted the 14 psu isohaline above Jamestown Island, facilitating individual oyster growth and extension of oyster habitat upriver toward the colony, thereby enhancing local oyster food resources. Data from distinct well layers suggest that the colonists also obtained oysters from reefs near Chesapeake Bay to augment oyster resources near Jamestown Island. The oyster shell season of harvest reconstructions suggest that these data come from either a 1611 well with a very short useful period or an undocumented older well abandoned by late 1611.

Are oysters being bored to death? Influence of Cliona celata on Crassostrea virginica condition, growth and survival.

PubMed

Carroll, John M; O'Shaughnessy, Kathryn A; Diedrich, Grant A; Finelli, Christopher M

2015-11-17

The boring sponge Cliona celata is a nuisance species that can have deleterious effects on eastern oyster Crassostrea virginica growth, condition, and survival. Surprisingly, however, these effects have not been well documented and when examined, results have been equi-vocal. In this study, we provide a direct comparison of growth, condition, and survival of sponge-colonized and uncolonized oysters in southeast North Carolina in 2 separate experiments. In the first experiment, sponge-colonized oysters exhibited significantly slower growth rates, reduced condition, and lower survival relative to uncolonized oysters, although results may have been confounded by oyster source. In the second experiment, using smaller oysters from the same source population, growth rate was again significantly reduced in colonized oysters relative to uncolonized oysters, however neither condition nor survival differed. In field surveys of the same population, colonized individuals across a range of sizes demonstrated significantly reduced condition. Further, condition index was negatively correlated with sponge biomass, which was positively correlated with oyster size, suggesting that the impact of the sponge changes with ontogeny. By investigating clearance rates, tissue isotopic and nutrient content, as well as caloric value, this study provides further evidence that sponge presence causes the oysters to divert energy into costly shell maintenance and repair at the expense of shell and somatic growth. Thus, although variable, our results demonstrate negative impacts of sponge infestation on oyster demographics, particularly as oysters grow larger.

Using an Integrated Hydrologic Model to Assess the Ecohydrological Impacts of Change on a Mountain Headwaters Critical Zone

NASA Astrophysics Data System (ADS)

Collins, C.; Maxwell, R. M.; Visser, A.

2016-12-01

The critical zone is the region of the Earth's crust where hydrogeology, ecology, and climate interact. As many critical zone processes are fundamental, the significance of studying critical zone processes goes beyond understanding the local ecohydrological setting. Therefore studying critical zone governing processes requires an interdisciplinary approach that integrates simulation and observation. In this study, a high-resolution integrated hydrologic model, ParFlow-CLM, was developed for the Providence Creek watershed. Providence Creek is a highly instrumented critical zone observatory (CZO) located in the southern Sierra Nevada Mountains, a region currently experiencing a range of short-term responses (i.e. tree mortality) to a severe four-year drought. Sources of plant water use, pathways and residence times of water through the subsurface are identified using a suite of isotopic signatures and numerical particle tracking. Implications of using a fully coupled integrated hydrologic model accompanied by tracer analysis include better understanding of water partitioning and water storage in the regolith and vegetation water use during drought time conditions. The importance of subsurface storage, plant available water and lateral flow during the 2012-2015 drought to mitigate vegetation stress are addressed and verified against observed tree mortality. The stream flow response to tree mortality in the aftermath of the drought, analogous to the Colorado Mountain Pine Beetle case, provides insight into the potential effects of proposed forest management practices.

Tracking tracer breakthrough in the hyporheic zone using time‐lapse DC resistivity, Crabby Creek, Pennsylvania

USGS Publications Warehouse

Nyquist, Jonathan E.; Toran, Laura; Fang, Allison C.; Ryan, Robert J.; Rosenberry, Donald O.

2010-01-01

Characterization of the hyporheic zone is of critical importance for understanding stream ecology, contaminant transport, and groundwater‐surface water interaction. A salt water tracer test was used to probe the hyporheic zone of a recently re‐engineered portion of Crabby Creek, a stream located near Philadelphia, PA. The tracer solution was tracked through a 13.5 meter segment of the stream using both a network of 25 wells sampled every 5–15 minutes and time‐lapse electrical resistivity tomographs collected every 11 minutes for six hours, with additional tomographs collected every 100 minutes for an additional 16 hours. The comparison of tracer monitoring methods is of keen interest because tracer tests are one of the few techniques available for characterizing this dynamic zone, and logistically it is far easier to collect resistivity tomographs than to install and monitor a dense network of wells. Our results show that resistivity monitoring captured the essential shape of the breakthrough curve and may indicate portions of the stream where the tracer lingered in the hyporheic zone. Time‐lapse resistivity measurements, however, represent time averages over the period required to collect a tomographic data set, and spatial averages over a volume larger than captured by a well sample. Smoothing by the resistivity data inversion algorithm further blurs the resulting tomograph; consequently resistivity monitoring underestimates the degree of fine‐scale heterogeneity in the hyporheic zone.

The Idaho cobalt belt

USGS Publications Warehouse

Bookstrom, Arthur A.

2013-01-01

The Idaho cobalt belt (ICB) is a northwest-trending belt of cobalt (Co) +/- copper (Cu)-bearing deposits and prospects in the Salmon River Mountains of east-central Idaho, U.S.A. The ICB is about 55 km long and 10 km long in its central part, which contains multiple strata-bound ore zones in the Blackbird mine area. The Black Pine and Iron Creek Co-Cu prospects are southeast of Blackbird, and the Tinkers Pride, Bonanza Copper, Elk Creek, and Salmon Canyon Copper prospects are northwest of Blackbird.

Hyperspectral remote sensing of wild oyster reefs

NASA Astrophysics Data System (ADS)

Le Bris, Anthony; Rosa, Philippe; Lerouxel, Astrid; Cognie, Bruno; Gernez, Pierre; Launeau, Patrick; Robin, Marc; Barillé, Laurent

2016-04-01

The invasion of the wild oyster Crassostrea gigas along the western European Atlantic coast has generated changes in the structure and functioning of intertidal ecosystems. Considered as an invasive species and a trophic competitor of the cultivated conspecific oyster, it is now seen as a resource by oyster farmers following recurrent mass summer mortalities of oyster spat since 2008. Spatial distribution maps of wild oyster reefs are required by local authorities to help define management strategies. In this work, visible-near infrared (VNIR) hyperspectral and multispectral remote sensing was investigated to map two contrasted intertidal reef structures: clusters of vertical oysters building three-dimensional dense reefs in muddy areas and oysters growing horizontally creating large flat reefs in rocky areas. A spectral library, collected in situ for various conditions with an ASD spectroradiometer, was used to run Spectral Angle Mapper classifications on airborne data obtained with an HySpex sensor (160 spectral bands) and SPOT satellite HRG multispectral data (3 spectral bands). With HySpex spectral/spatial resolution, horizontal oysters in the rocky area were correctly classified but the detection was less efficient for vertical oysters in muddy areas. Poor results were obtained with the multispectral image and from spatially or spectrally degraded HySpex data, it was clear that the spectral resolution was more important than the spatial resolution. In fact, there was a systematic mud deposition on shells of vertical oyster reefs explaining the misclassification of 30% of pixels recognized as mud or microphytobenthos. Spatial distribution maps of oyster reefs were coupled with in situ biomass measurements to illustrate the interest of a remote sensing product to provide stock estimations of wild oyster reefs to be exploited by oyster producers. This work highlights the interest of developing remote sensing techniques for aquaculture applications in coastal areas.

Weathering, Fractures and Water in the deep Critical Zone: Geophysical investigations in the U.S. Critical Zone Observatories

NASA Astrophysics Data System (ADS)

Holbrook, W. S.; Carr, B.; Moon, S.; Perron, J. T.; Hayes, J. L.; Flinchum, B. A.; St Clair, J. T.; Riebe, C. S.; Richter, D., Jr.; Leone, J.

2015-12-01

The Critical Zone (CZ) is Earth's breathing skin: the thin layer from treetop to bedrock that supports most terrestrial life. Key hydrological, biogeochemical, and physical processes occur in the CZ, including physical and chemical weathering, soil production, erosion, nutrient cycling, and surface/groundwater exchange. These processes in turn influence subsurface water storage capacity, landscape evolution, ecological stability, aquifer recharge and stream flow. Because the deep CZ is hidden from direct observation, it can only be studied by drilling and/or geophysical measurements. Given the relative scarcity of such data, we lack a complete understanding of the architecture of the CZ, how it varies across landscapes, and what controls that variation. We present geophysical data that address these questions at six Critical Zone Observatories (CZO): Calhoun, Boulder Creek, Eel River, Reynolds Creek, Catalina-Jemez, and Southern Sierra. Conclusions include: (1) Regolith depth is influenced by the opening of fractures due to the release of regional and topographic stress as rocks are exhumed toward the surface. Stress models at Calhoun and Boulder Creek show remarkable agreement with seismic velocities in the shallow subsurface, suggesting that stress release controls the development of fracture porosity in the CZ. (2) Chemical weathering (plagioclase dissolution) begins at depths where fractures open (~40 m at Calhoun), implying that fracturing and chemical weathering are intimately paired in the deep CZ. (3) Volumetric strain is an underappreciated contributor to porosity in the CZ. In the Southern Sierra, strain dominates over chemical weathering in the upper 10 m, consistent with the stress-release model. (4) Geological structure and lithology can trump environmental controls (e.g., aspect and climate) on regolith development. At Catalina, strongly contrasting regolith thickness on north- and south-facing slopes, is not due to "northness", but rather to foliation in the schist bedrock, which dips into the south-facing slope, creating permeable pathways for water infiltration. Lithology, especially differences in initial porosity, strongly influences regolith thickness at Reynolds Creek, where regolith is thicker in basalt flows than in granite.

Hydrographic characterization of two tidal creeks with implications for watershed land use, flushing times, and benthic production

USGS Publications Warehouse

Buzzelli, C.; Holland, Austin F.; Sanger, D.M.; Conrads, P.C.

2007-01-01

Many coastal ecosystems are undergoing anthropogenic stress from large increases in population and urbanization. In many regions changes in freshwater and material inputs to the coastal zone are altering the biogeochemical and biological capacities of ecosystems. Despite increased watershed inputs, large tidal volumes and flushing indicative of macrotidal estuaries can modulate the fate of introduced materials masking some of the symptoms of eutrophication. The Land Use Coastal Ecosystem Study (LU-CES) examined linkages between land use and environmental properties of Malind and Okatee Creeks in South Carolina from 2001 to 2004. The objectives of this particular study were to assess the hydrography of the two macrotidal creek ecosystems, explore differences in dissolved oxygen (DO), and develop a better understanding of the variations in primary and benthic secondary production in southeastern creek ecosystems. Depth, pH, salinity, and DO were reduced and more variable in Malind Creek than in Okatee Creek, although both creeks had strong semidiurnal frequencies in salinity time signatures. While time series analyses of DO saturation in Malind Creek revealed a dominant semidiurnal pattern, Okatee Creek had a distinctly diel DO pattern. The strongly semidiurnal fluctuations in DO and reduced flushing time indicated that biological processes were not fast enough to influence DO in Malind Creek. The Okatee Creek system had a much greater storage volume, a wider marsh, and a dominant 25-h DO frequency. These attributes contributed to an estimated 8-10 times more phytoplankton-based carbon in Okatee Creek and twice the annual benthic production. As expected from their proximity to the upland, low surface area, and high organic content, both ecosystems were net heterotrophic. This fundamental understanding of tidal creek hydrography is being used to help define linkages among differential watershed land uses, flushing characteristics, and levels of biological production in coastal ecosystems of the southeastern United States. ?? 2007 Estuarine Research Federation.

Hydrological and geophysical investigation of streamflow losses and restoration strategies in an abandoned mine lands setting

USGS Publications Warehouse

Cravotta, Charles A.; Sherrod, Laura; Galeone, Daniel G.; Lehman, Wayne G.; Ackman, Terry E.; Kramer, Alexa

2017-01-01

Longitudinal discharge and water-quality campaigns (seepage runs) were combined with surface-geophysical surveys, hyporheic-temperature profiling, and watershed-scale hydrological monitoring to evaluate the locations, magnitude, and impact of streamwater losses from the West Creek subbasin of the West West Branch Schuylkill River into the underground Oak Hill Mine complex that extends beneath the watershed divide. Abandoned mine drainage (AMD), containing iron and other contaminants, from the Oak Hill Boreholes to the West Branch Schuylkill River was sustained during low-flow conditions and correlated to streamflow lost through the West Creek streambed. During high-flow conditions, streamflow was transmitted throughout West Creek; however, during low-flow conditions, all streamflow from the perennial headwaters was lost within the 300-to-600-m "upper reach" where an 1889 mine map indicated steeply dipping coalbeds underlie the channel. During low-flow conditions, the channel within the "intermediate reach" 700-to-1650-m downstream gained groundwater seepage with higher pH and specific conductance than upstream; however, all streamflow 1650-to-2050-m downstream was lost to underlying mines. Electrical resistivity and electromagnetic conductivity surveys indicated conductive zones beneath the upper reach, where flow loss occurred, and through the intermediate reach, where gains and losses occurred. Temperature probes at 0.06-to-0.10-m depth within the hyporheic zone of the intermediate reach indicated potential downward fluxes as high as 2.1x10-5 m/s. Cumulative streamflow lost from West Creek during seepage runs averaged 53.4 L/s, which equates to 19.3 percent of the daily average discharge of AMD from the Oak Hill Boreholes and a downward flux of 1.70x10-5 m/s across the 2.1-km-by-1.5-m West Creek stream-channel area.

SETTLEMENT AND SURVIVAL OF THE OYSTER CRASSOSTREA VIRGINICA ON CREATED OYSTER REEF HABITATS IN CHESAPEAKE BAY

EPA Science Inventory

Efforts to restore the Eastern oyster (Crassostrea virginica) reef habitats in Chesapeake Bay typically begin with the placement of hard substrata to form three-dimensional mounds on the seabed to serve as a base for oyster recruitment and growth. A shortage of oyster shell for ...

High pressure inactivation of HAV within oysters: comparison of shucked oysters with whole in shell meats

USDA-ARS?s Scientific Manuscript database

High pressure inactivation of hepatitis A virus (HAV) within oysters bioaccumulated under simulated natural conditions to levels >106 PFU/oyster has been evaluated. Five min treatments at 20C were administered at 350, 375, and 400 MegaPascals (MPa). Shucked and whole-in-shell oysters were directly...

Circulation, mixing, and transport in nearshore Lake Erie in the vicinity of Villa Angela Beach and Euclid Creek, Cleveland, Ohio, September 11-12, 2012

USGS Publications Warehouse

Jackson, P. Ryan

2013-01-01

Villa Angela Beach, on the Lake Erie lakeshore near Cleveland, Ohio, is adjacent to the mouth of Euclid Creek, a small, flashy stream draining approximately 23 square miles and susceptible to periodic contamination from combined sewer overflows (CSOs) (97 and 163 CSO events in 2010 and 2011, respectively). Concerns over high concentrations of Escherichia coli (E. coli) in water samples taken along this beach and frequent beach closures led to the collection of synoptic data in the nearshore area in an attempt to gain insights into mixing processes, circulation, and the potential for transport of bacteria and other CSO-related pollutants from various sources in Euclid Creek and along the lakefront. An integrated synoptic survey was completed by the U.S. Geological Survey on September 11–12, 2012, during low-flow conditions on Euclid Creek, which followed rain-induced high flows in the creek on September 8–9, 2012. Data-collection methods included deployment of an autonomous underwater vehicle and use of a manned boat equipped with an acoustic Doppler current profiler. Spatial distributions of water-quality measures and nearshore currents indicated that the mixing zone encompassing the mouth of Euclid Creek and Villa Angela Beach is dynamic and highly variable in extent, but can exhibit a large zone of recirculation that can, at times, be decoupled from local wind forcing. Observed circulation patterns during September 2012 indicated that pollutants from CSOs in Euclid Creek and water discharged from three shoreline CSO points within 2,000 feet of the beach could be trapped along Villa Angela Beach by interaction of nearshore currents and shoreline structures. In spite of observed coastal downwelling, denser water from Euclid Creek is shown to mix to the surface via offshore turbulent structures that span the full depth of flow. While the southwesterly longshore currents driving the recirculation pattern along the beach front were observed during the 2011–12 synoptic surveys, longshore currents with a southwesterly component capable of establishing the recirculation only occurred about 30 percent of the time from June 7 to October 6, 2012, based on continuous velocity data collected near Villa Angela Beach.

Molecular epidemiology of oyster-related human noroviruses and their global genetic diversity and temporal-geographical distribution from 1983 to 2014.

PubMed

Yu, Yongxin; Cai, Hui; Hu, Linghao; Lei, Rongwei; Pan, Yingjie; Yan, Shuling; Wang, Yongjie

2015-11-01

Noroviruses (NoVs) are a leading cause of epidemic and sporadic cases of acute gastroenteritis worldwide. Oysters are well recognized as the main vectors of environmentally transmitted NoVs, and disease outbreaks linked to oyster consumption have been commonly observed. Here, to quantify the genetic diversity, temporal distribution, and circulation of oyster-related NoVs on a global scale, 1,077 oyster-related NoV sequences deposited from 1983 to 2014 were downloaded from both NCBI GenBank and the NoroNet outbreak database and were then screened for quality control. A total of 665 sequences with reliable information were obtained and were subsequently subjected to genotyping and phylogenetic analyses. The results indicated that the majority of oyster-related NoV sequences were obtained from coastal countries and regions and that the numbers of sequences in these regions were unevenly distributed. Moreover, >80% of human NoV genotypes were detected in oyster samples or oyster-related outbreaks. A higher proportion of genogroup I (GI) (34%) was observed for oyster-related sequences than for non-oyster-related outbreaks, where GII strains dominated with an overwhelming majority of >90%, indicating that the prevalences of GI and GII are different in humans and oysters. In addition, a related convergence of the circulation trend was found between oyster-related NoV sequences and human pandemic outbreaks. This suggests that oysters not only act as a vector of NoV through environmental transmission but also serve as an important reservoir of human NoVs. These results highlight the importance of oysters in the persistence and transmission of human NoVs in the environment and have important implications for the surveillance of human NoVs in oyster samples. Copyright © 2015, American Society for Microbiology. All Rights Reserved.

Activities and Ecological Role of Adult Aquatic Insects in the Riparian Zone of Streams

Treesearch

John K. Jackson; Vincent H. Resh

1989-01-01

Most adult aquatic insects that emerge from streams live briefly in the nearby riparian zone. Adult activities, such as mating, dispersal, and feeding, influence their distribution in the terrestrial habitat. A study at Big Sulphur Creek, California, has shown that both numbers and biomass of adult aquatic insects are greatest in the near-stream vegetation; however,...

Data set: A modeling dataset that spans the rain - snow transition zone: Johnston Draw catchment, Reynolds Creek Experimental Watershed, Idaho, USA

USDA-ARS?s Scientific Manuscript database

Hydrometeorological data from the rain-to-snow transition zone in mountain basins are limited. As the climate warms, the transition from rain to snow in mountain regions is moving to higher elevations, and these changes are altering the timing of water delivery to the downstream streams, lakes and w...

From artificial structures to self-sustaining oyster reefs

NASA Astrophysics Data System (ADS)

Walles, Brenda; Troost, Karin; van den Ende, Douwe; Nieuwhof, Sil; Smaal, Aad C.; Ysebaert, Tom

2016-02-01

Coastal ecosystems are increasingly recognized as essential elements within coastal defence schemes and coastal adaptation. The capacity of coastal ecosystems, like marshes and oyster reefs, to maintain their own habitat and grow with sea-level rise via biophysical feedbacks is seen as an important advantage of such systems compared to man-made hard engineering structures. Providing a suitable substrate for oysters to settle on offers a kick-start for establishment at places where they were lost or are desirable for coastal protection. Accumulation of shell material, through recruitment and growth, is essential to the maintenance of oyster reefs as it provides substrate for new generations (positive feedback loop), forming a self-sustainable structure. Insight in establishment, survival and growth thresholds and knowledge about the population dynamics are necessary to successfully implement oyster reefs in coastal defence schemes. The aim of this paper is to investigate whether artificial Pacific oyster reefs develop into self-sustaining oyster reefs that contribute to coastal protection. Reef development was investigated by studying recruitment, survival and growth rates of oysters on artificial oyster reefs in comparison with nearby natural Pacific oyster reefs. The artificial reef structure successfully offered substrate for settlement of oysters and therefore stimulated reef formation. Reef development, however, was hampered by local sedimentation and increasing tidal emersion. Tidal emersion is an important factor that can be used to predict where artificial oyster reefs have the potential to develop into self-sustaining reefs that could contribute to coastal protection, but it is also a limiting factor in using oyster reefs for coastal protection.

Hydrogeologic framework of the shallow ground-water system in the Cox Hall Creek basin, Cape May County, New Jersey

USGS Publications Warehouse

Lacombe, Pierre J.; Zapecza, Otto S.

2006-01-01

Cape May County is investigating the feasibility of restoring the lowermost reach of Cox Hall Creek to its former state as a tidal saltwater wetland; however, the potential for contamination of the shallow ground-water system, which provides water to hundreds of nearby privately owned domestic wells, with saltwater from the restored wetland is of particular concern. To evaluate the potential effectiveness and risks of restoring the saltwater wetlands, the County needs information about the hydrogeologic framework in the area, and about the potential vulnerability of the domestic wells to contamination. The shallow ground-water system in the Cox Hall Creek area consists of unconsolidated Holocene and Pleistocene deposits. The Holly Beach water-bearing zone, the unconfined (water-table) aquifer, is about 35 feet thick and contains a 2- to 4-foot-thick clay lens about 10 feet below land surface; a lower, more discontinuous clay lens about 30 to 35 feet below land surface ranges up to 5 feet in thickness. A 75-foot-thick confining unit separates the Holly Beach water-bearing zone from the underlying estuarine sand aquifer. The clay lenses in the Holly Beach water-bearing zone likely retard the movement of contaminants from septic tanks, lawns, and other surficial sources, protecting wells that tap the lower, sandy part of the aquifer. The clay lenses also may protect these wells from salty surface water if withdrawals from the Holly Beach water-bearing zone are not increased substantially. Deeper wells that tap the estuarine sand aquifer are more effectively protected from saltwater from surface sources because of the presence of the overlying confining unit.

National Fire News- Current Wildfires

MedlinePlus

... of Denali Bella Creek Southwest Area Forestry, DOF ST 2,631 0 Bismark Galena Zone BLM 876 ... of Hughes Devil's Elbow Southwest Area Forestry, DOF ST 180 0 Door Mountains Southwest Area Forestry, DOF ...

OYSTER POPULATUION ESTIMATION IN SUPPORT OF THE TEN-YEAR GOAL FOR OYSTER RESOTRATION IN THE CHESAPEAKE BAY: DEVELOPING STRATEGIES FOR RESTORING AND MANAGING THE EASTERN OYSTER

EPA Science Inventory

Mann, Roger, Steve Jordan, Gary Smith, Kennedy Paynter, James Wesson, Mary Christman, Jessica Vanisko, Juliana Harding, Kelly Greenhawk and Melissa Southworth. 2003. Oyster Population Estimation in Support of the Ten-Year Goal for Oyster Restoration in the Chesapeake Bay: Develop...

Shucking the Limitations of Hawai'i's Aquaculture Industry with Oysters

Science.gov Websites

-CASTRO | October 2015 VIDEO | Oyster Farming in a Hawaiian Fishpond, Featuring Ku'uipo McCarty It's a about oyster farming. "Our process started in 2008, beginning with doing some research and comparison, Hawai'i imports an estimated 400,000 oysters a month, she says. Oyster farming could become a

Increased temperatures combined with lowered salinities differentially impact oyster size class growth and mortality

USGS Publications Warehouse

LaPeyre, Megan K.; Rybovich, Molly; Hall, Steven G.; La Peyre, Jerome F.

2016-01-01

Changes in the timing and interaction of seasonal high temperatures and low salinities as predicted by climate change models could dramatically alter oyster population dynamics. Little is known explicitly about how low salinity and high temperature combinations affect spat (<25mm), seed (25–75mm), andmarket (>75mm) oyster growth and mortality. Using field and laboratory studies, this project quantified the combined effects of extremely low salinities (<5) and high temperatures (>30°C) on growth and survival of spat, seed, andmarket-sized oysters. In 2012 and 2013, hatchery-produced oysters were placed in open and closed cages at three sites in Breton Sound, LA, along a salinity gradient that typically ranged from 5 to 20. Growth and mortality were recorded monthly. Regardless of size class, oysters at the lowest salinity site (annualmean = 4.8) experienced significantly highermortality and lower growth than oysters located in higher salinity sites (annual means = 11.1 and 13.0, respectively); furthermore, all oysters in open cages at the two higher salinity sites experienced higher mortality than in closed cages, likely due to predation. To explicitly examine oyster responses to extreme low salinity and high temperature combinations, a series of laboratory studies were conducted. Oysters were placed in 18 tanks in a fully crossed temperature (25°C, 32°C) by salinity (1, 5, and 15) study with three replicates, and repeated at least twice for each oyster size class. Regardless of temperature, seed and market oysters held in low salinity tanks (salinity 1) experienced 100% mortality within 7 days. In contrast, at salinity 5, temperature significantly affected mortality; oysters in all size classes experienced greater than 50%mortality at 32°C and less than 40%mortality at 25°C. At the highest salinity tested (15), only market-sized oysters held at 32°C experienced significant mortality (>60%). These studies demonstrate that high water temperatures (>30°C) and low salinities (<5) negatively impact oyster growth and survival differentially and that high temperatures alone may negatively impact market-sized oysters. It is critical to understand the potential impacts of climate and anthropogenic changes on oyster resources to better adapt and manage for long-term sustainability.

Suitability of oyster restoration sites along the Louisiana coast: Examining site and stock × site interaction

USGS Publications Warehouse

Schwarting Miller, Lindsay; La Peyre, Jerome F.; LaPeyre, Megan K.

2017-01-01

Recognition of the global loss of subtidal oyster reefs has led to a rise in reef restoration efforts, including in the Gulf of Mexico. Created reef success depends entirely on selecting a location that supports long-term oyster growth and survival, including the recruitment and survival of on-reef oysters. Significant changes in estuarine salinity through management of freshwater inflows and through changed precipitation patterns may significantly impact the locations of optimal oyster restoration sites. These rapid shifts in conditions necessitate a need to better understand both impacts to on-reef oyster growth and population development, and variation in oyster stock performance. Oyster growth, mortality, condition, and disease prevalence were examined in three different stocks of oysters located in protected cages, as well as oyster recruitment and mortality on experimental reef units in three different locations representing a salinity gradient, along the Louisiana Gulf coast in 2011 and 2012. Over a 2-y period, the high-salinity site had highest oyster growth rate in protected cages but demonstrated the least likelihood for reef development based on on-reef oyster population failure, likely because of predation-related mortality (high recruitment and 100% mortality). In contrast, the midsalinity site with moderate oyster growth and on-reef recruitment and low mortality demonstrated a higher likelihood for reef development. The lowest salinity site exhibited extreme variability in all oyster responses between years because of extreme variation in environmental conditions during the study, indicating a low likelihood of long-term reef development. Whereas limited differences in stock performance between sites were found, the range of site environmental conditions tested was ultimately much lower than expected and may not have provided a wide enough range of conditions. In areas with limited, low recruitment, or rapidly changing environmental conditions, seeding with stocks selected for best growth and survival under expected future environmental conditions could better ensure reef development by using oyster populations best suited to the predicted conditions. With rapidly changing estuarine conditions from anthropogenic activities and climate change, siting of oyster reef restoration incorporating both oyster population dynamics and in situ biotic and abiotic interactions is critical in better directing site selection for reef restoration efforts.

A microbial spoilage profile of half shell Pacific oysters (Crassostrea gigas) and Sydney rock oysters (Saccostrea glomerata).

PubMed

Madigan, Thomas L; Bott, Nathan J; Torok, Valeria A; Percy, Nigel J; Carragher, John F; de Barros Lopes, Miguel A; Kiermeier, Andreas

2014-04-01

This study aimed to assess bacterial spoilage of half shell Pacific and Sydney rock oysters during storage using microbial culture and 16S rRNA pyrosequencing. Odour and pH of oyster meats were also investigated. Estimation of microbiological counts by microbial culture highlighted growth of psychrotrophic bacteria. During storage, odour scores (a score describing deterioration of fresh odours where a score of 1 is fresh and 4 is completely spoiled) increased from 1.0 to 3.0 for Pacific oysters and from 1.3 to 3.4 for Sydney rock oysters. pH results obtained for both species fluctuated during storage (range 6.28-6.73) with an overall increase at end of storage. Pyrosequencing revealed that the majority of bacteria at Day 0 represented taxa from amongst the Proteobacteria, Tenericutes and Spirochaetes that have not been cultured and systematically described. During storage, Proteobacteria became abundant with Pseudoalteromonas and Vibrio found to be dominant in both oyster species at Day 7. Analysis of the pyrosequencing data showed significant differences in bacterial profiles between oyster species and storage time (both P = 0.001). As oysters spoiled, bacterial profiles between oyster species became more similar indicating a common spoilage profile. Data presented here provides detailed insight into the changing bacterial profile of shucked oysters during storage and has identified two genera, Pseudoalteromonas and Vibrio, as being important in spoilage of shucked oysters. Copyright © 2013 Elsevier Ltd. All rights reserved.

Contribution of in Vivo Experimental Challenges to Understanding Flat Oyster Ostrea edulis Resistance to Bonamia ostreae

PubMed Central

Morga, Benjamin; Renault, Tristan; Faury, Nicole; Lerond, Sophie; Garcia, Céline; Chollet, Bruno; Joly, Jean-Pierre; Lapègue, Sylvie; Harrang, Estelle; Arzul, Isabelle

2017-01-01

Bonamiosis due to the parasite Bonamia ostreae has been associated with massive mortality outbreaks in European flat oyster stocks in Europe. As eradication and treatment are not possible, the control of the disease mainly relies on transfer restriction. Moreover, selection has been applied to produce resistant flat oyster families, which present better survival and lower prevalence than non-selected oysters. In order to better understand the mechanisms involved in resistance to bonamiosis, cellular and molecular responses of 2 oyster groups (selected oysters and wild-type oysters) were analyzed in the context of experimental injection and cohabitation infections. Cellular responses including non-specific esterases detection, ROS production and phagocytosis activity were analyzed by flow cytometry. Four genes homologous to those shown to be involved in immunity were selected (Inhibitor of apotosis OeIAP, Fas ligand OeFas-ligand, Oe-SOD, and OeEc-SOD) and monitored by quantitative reverse-transcription PCR (qRT-PCR). Infected oysters showed higher phagocytosis activity than controls. Infected selected oyster show a lower phagocytosis activity which might be a protection against the parasite infection. The expression of OeIAP and OeFas-ligand gene was significantly increased in selected oysters at 5 days post-injection. OeIAP gene expression appeared to be significantly increased in wild-type oysters at 8 days post-injection. Our results suggest that resistance to bonamiosis partly relies on the ability of the oysters to modulate apoptosis. PMID:29057216

New Hampshire recreational oyster harvesters: profile, perceptions, and attitudes

Treesearch

Alberto B. Manalo; Bruce E. Lindsay; George E. Frick

1992-01-01

A survey of holders of a 1989 New Hampshire oyster-harvesting license revealed that recreational oyster harvesting is pursued mostly by older men. The 1988 closing of some parts of Great Bay to oyster harvesting resulted in license holders' taking one fewer trip and taking about six minutes longer to harvest one bushel of oysters in 1989. The average annual...

Investigations of Salmonella enterica serovar newport infections of oysters by using immunohistochemistry and knockout mutagenesis.

PubMed

Morrison, Christopher M; Dial, Sharon M; Day, William A; Joens, Lynn A

2012-04-01

The consumption of raw oysters is an important risk factor in the acquisition of food-borne disease, with Salmonella being one of a number of pathogens that have been found in market oysters. Previous work by our lab found that Salmonella was capable of surviving in oysters for over 2 months under laboratory conditions, and this study sought to further investigate Salmonella's tissue affinity and mechanism of persistence within the oysters. Immunohistochemistry was used to show that Salmonella was capable of breaching the epithelial barriers, infecting the deeper connective tissues of the oysters, and evading destruction by the oysters' phagocytic hemocytes. To further investigate the mechanism of these infections, genes vital to the function of Salmonella's two main type III secretion systems were disrupted and the survivability of these knockout mutants within oysters was assayed. When the Salmonella pathogenicity island 1 and 2 mutant strains were exposed to oysters, there were no detectable deficiencies in their abilities to survive, suggesting that Salmonella's long-term infection of oysters does not rely upon these two important pathogenicity islands and must be due to some other, currently unknown, mechanism.

Exploring spatial and temporal variations of cadmium concentrations in pacific oysters from british columbia.

PubMed

Feng, Cindy Xin; Cao, Jiguo; Bendell, Leah

2011-09-01

Oysters from the Pacific Northwest coast of British Columbia, Canada, contain high levels of cadmium, in some cases exceeding some international food safety guidelines. A primary goal of this article is the investigation of the spatial and temporal variation in cadmium concentrations for oysters sampled from coastal British Columbia. Such information is important so that recommendations can be made as to where and when oysters can be cultured such that accumulation of cadmium within these oysters is minimized. Some modern statistical methods are applied to achieve this goal, including monotone spline smoothing, functional principal component analysis, and semi-parametric additive modeling. Oyster growth rates are estimated as the first derivatives of the monotone smoothing growth curves. Some important patterns in cadmium accumulation by oysters are observed. For example, most inland regions tend to have a higher level of cadmium concentration than most coastal regions, so more caution needs to be taken for shellfish aquaculture practices occurring in the inland regions. The semi-parametric additive modeling shows that oyster cadmium concentration decreases with oyster length, and oysters sampled at 7 m have higher average cadmium concentration than those sampled at 1 m. © 2010, The International Biometric Society.

Investigations of Salmonella enterica Serovar Newport Infections of Oysters by Using Immunohistochemistry and Knockout Mutagenesis

PubMed Central

Morrison, Christopher M.; Dial, Sharon M.; Day, William A.

2012-01-01

The consumption of raw oysters is an important risk factor in the acquisition of food-borne disease, with Salmonella being one of a number of pathogens that have been found in market oysters. Previous work by our lab found that Salmonella was capable of surviving in oysters for over 2 months under laboratory conditions, and this study sought to further investigate Salmonella's tissue affinity and mechanism of persistence within the oysters. Immunohistochemistry was used to show that Salmonella was capable of breaching the epithelial barriers, infecting the deeper connective tissues of the oysters, and evading destruction by the oysters' phagocytic hemocytes. To further investigate the mechanism of these infections, genes vital to the function of Salmonella's two main type III secretion systems were disrupted and the survivability of these knockout mutants within oysters was assayed. When the Salmonella pathogenicity island 1 and 2 mutant strains were exposed to oysters, there were no detectable deficiencies in their abilities to survive, suggesting that Salmonella's long-term infection of oysters does not rely upon these two important pathogenicity islands and must be due to some other, currently unknown, mechanism. PMID:22307286

Bacterial microbiota profile in gills of modified atmosphere-packaged oysters stored at 4 °C.

PubMed

Chen, Huibin; Wang, Meiying; Lin, Xiangzhi; Shi, Caihua; Liu, Zhiyu

2017-02-01

As filter-feeding bivalves, oysters can accumulate microorganisms into their gills, causing spoilage and potential safety issues. This study aims to investigate the changes in the gill microbiota of oysters packed under air and modified atmospheres (MAs, 50% CO 2 : 50% N 2 , 70% CO 2 : 30% O 2 , and 50% CO 2 : 50% O 2 ) during storage at 4 °C. The diversity of bacterial microbiota in oyster gills was profiled through polymerase chain reaction-denaturing gradient gel electrophoresis (PCR-DGGE) analysis on the 16S rRNA gene V3 region to describe the variation during the entire storage period. The DGGE profile revealed high bacterial diversity in the air- and MA-packaged oyster gills, and the spoilage bacterial microbiota varied in the MA-packaged oyster gills. Results indicated that CO 2 :O 2 (70%:30%) was suitable for oyster MA packaging and that high bacterial loads in oyster gills need to be considered during storage. In addition, Lactobacillus and Lactococcus species were found to grow dominantly in fresh oyster gills under MA packaging, which supports the potential application of MA packaging for oyster storage. Copyright © 2016 Elsevier Ltd. All rights reserved.

Reproductive responses and detoxification of estuarine oyster Crassostrea hongkongensis under metal stress: a seasonal study.

PubMed

Weng, Nanyan; Wang, Wen-Xiong

2015-03-03

Understanding the impacts of metal stress on the reproduction of dominant species, such as oysters, in seriously contaminated estuarine environments has great ecological implications. In the present study, the reproductive conditions were examined monthly for 1 year in oysters Crassostrea hongkongensis from a heavily metal-contaminated site (Baijiao, mainly by Cu and Zn) in the Jiulong River estuary and a relatively clean nearby estuary (Jiuzhen). Oysters sampled in the contaminated site showed a delayed gametogenesis, a relatively shorter spawning period, and a lower gonad condition index in comparison to the oysters sampled in the reference site. In particular, we found that the proportion of females increased significantly in the contaminated oysters, which provided the first evidence that the feminization in wild oyster populations could be related to trace metal pollution. Additionally, the potential detoxification mechanism of trace metals in oysters was also investigated. Compartmentalization of trace metals in membrane-limited vesicles in hemocytes could be an important detoxification mechanism for the contaminated oysters. Our findings indicated that the long-term metal exposure may greatly influence the reproduction of the oysters and finally affect the recruitment and population of this species.

Oysters and Oyster Reef Communities in Florida.

ERIC Educational Resources Information Center

Knight, Jean; Bly, Joe

1989-01-01

The habitat, life history, feeding, classification, anatomy and pearl production of the American oyster (Crassostrea virginica) are presented. A list of other oyster reef inhabitants and predators is provided. Harvest and habitat loss are discussed. (CW)

Ecosystem engineers drive creek formation in salt marshes.

PubMed

Vu, Huy D; Wie Ski, Kazimierz; Pennings, Steven C

2017-01-01

Ecosystem engineers affect different organisms and processes in multiple ways at different spatial scales. Moreover, similar species may differ in their engineering effects for reasons that are not always clear. We examined the role of four species of burrowing crabs (Sesarma reticulatum, Eurytium limosum, Panopeus herbstii, Uca pugnax) in engineering tidal creek networks in salt marshes experiencing sea level rise. In the field, crab burrows were associated with heads of eroding creeks and the loss of plant (Spartina alterniflora) stems. S. reticulatum was closely associated with creek heads, but densities of the other crab species did not vary across marsh zones. In mesocosm experiments, S. reticulatum excavated the most soil and strongly reduced S. alterniflora biomass. The other three species excavated less and did not affect S. alterniflora. Creek heads with vegetation removed to simulate crab herbivory grew significantly faster than controls. Percolation rates of water into marsh sediments were 10 times faster at creek heads than on the marsh platform. Biomass decomposed two times faster at creek heads than on the marsh platform. Our results indicate that S. reticulatum increases creek growth by excavating sediments and by consuming plants, thereby increasing water flow and erosion at creek heads. Moreover, it is possible that S. reticulatum burrows also increase creek growth by increasing surface and subsurface erosion, and by increasing decomposition of organic matter at creek heads. Our results show that the interaction between crab and plant ecosystem engineers can have both positive and negative effects. At a small scale, in contrast to other marsh crabs, S. reticulatum harms rather than benefits plants, and increases erosion rather than marsh growth. At a large scale, however, S. reticulatum facilitates the drainage efficiency of the marsh through the expansion of tidal creek networks, and promotes marsh health. © 2016 by the Ecological Society of America.

Long-term spatiotemporal trends and health risk assessment of oyster arsenic levels in coastal waters of northern South China Sea.

PubMed

Wang, Xuefeng; Wang, Lifei; Jia, Xiaoping; Jackson, Donald A

2017-09-01

Long-term spatiotemporal trends and health risk assessment of oyster arsenic levels in the coastal waters of northern South China Sea were investigated in order to help improve the quality and safety control and sustainable aquaculture for mollusks in China. Cultured oysters (Crassostrea rivularis) collected from the waters of 23 bays, harbors, and estuaries along the coast of northern South China Sea from 1989 to 2012 were examined for spatial patterns and long-term temporal trends of oyster arsenic levels. Single-factor index and health risk assessment were used to quantify arsenic exposure to human health through oyster consumption. Overall, arsenic was detected in 97.4% of the oyster samples, and oyster arsenic levels were non-detectable-2.51 mg/kg with an average of 0.63 ± 0.54 mg/kg. Oyster arsenic levels in the coastal waters of northern South China Sea showed an overall decline from 1989 to 2012, remained relatively low since 2005, and slightly increased after 2007. Oyster arsenic levels in Guangdong coastal waters were much higher with more variation than in Guangxi and Hainan coastal waters, and the long-term trends of oyster arsenic levels in Guangdong coastal waters dominated the overall trends of oyster arsenic levels in the coastal waters of northern South China Sea. Within Guangdong Province, oyster arsenic levels were highest in east Guangdong coastal waters, followed by the Pearl River estuary and west Guangdong coastal waters. Single-factor index ranged between 0.27 and 0.97, and average health risk coefficient was 3.85 × 10 -5 , both suggesting that oyster arsenic levels in northern South China Sea are within the safe range for human consumption. However, long-term attention should be given to seafood market monitoring in China and the risk of arsenic exposure to human health through oyster consumption.

Spatial and temporal variations in cadmium concentrations and burdens in the Pacific oyster (Crassostrea gigas) sampled from the Pacific north-west.

PubMed

Bendell, Leah I; Feng, Cindy

2009-08-01

Oysters from the north-west coast of Canada contain high levels of cadmium, a toxic metal, in amounts that exceed food safety guidelines for international markets. A first required step to determine the sources of cadmium is to identify possible spatial and temporal trends in the accumulation of cadmium by the oyster. To meet this objective, rather than sample wild and cultured oysters of unknown age and origin, an oyster "grow-out" experiment was initiated. Cultured oyster seed was suspended in the water column up to a depth of 7 m and the oyster seed allowed to mature a period of 3 years until market size. Oysters were sampled bimonthly and at time of sampling, temperature, chlorophyll-a, turbidity and salinity were measured. Oyster total shell length, dry tissue weights, cadmium concentrations (microg g(-1)) and burdens (microg of cadmium oyster(-1)) were determined. Oyster cadmium concentrations and burdens were then interpreted with respect to the spatial and temporal sampling design as well as to the measured physio-chemical and biotic variables. When expressed as a concentration, there was a marked seasonality with concentrations being greater in winter as compared in summer; however no spatial trend was evident. When expressed as a burden which corrects for differences in tissue mass, there was no seasonality, however cadmium oyster burdens increased from south to north. Comparison of cadmium accumulation rates oyster(-1) among sites indicated three locations, Webster Island, on the west side of Vancouver Island, and two within Desolation Sound, Teakerne Arm and Redonda Bay, where point sources of cadmium which are not present at all other sampling locations may be contributing to overall oyster cadmium burdens. Of the four physio-chemical factors measured only temperature and turbidity weakly correlated with tissue cadmium concentrations (r(2)=-0.13; p<0.05). By expressing oyster cadmium both as concentration and burden, regional and temporal patterns were demonstrated, which may have been missed if just concentration was determined.

Application of oysters as useful concentration indicators to evaluate the fate of xenoestrogenic alkylphenols along the western coastal areas of Taiwan

NASA Astrophysics Data System (ADS)

Ding, Wanghsien

2016-04-01

The oyster is an important aquacultural species in Taiwan. Since oysters naturally inhabit shelves near the coast, samples from particular "oyster cultural sites" can be applied to evaluate the pollution levels of segments of coastal water. Insufficient wastewater treatment has caused untreated wastewaters to flow into rivers, and hence, into oyster cultural areas in estuaries as well as shallow coastal waters. Therefore, the concentration of pollutants in the oysters can be used as concentration indicators to evaluate the fate of the pollutants on the western coastal areas of Taiwan. In this study, xenoestrogenic alkylphenols were determined in oyster samples by extractive steam distillation prior to their determination by gas chromatography - mass spectrometry. The results show that a group of 4-nonylphenol isomers (4-NPs) were ubiquitous in oysters with concentration levels ranging from 23 to 3370 ng/g (wet weight). The concentrations of 4-NPs varied with different levels of 4-NPs found across unrelated estuaries water samples, and higher level of 4-NPs in water samples caused higher concentration of 4-NPs found in oyster tissue samples. Moreover, at the same oyster sites mentioned previously, the levels of 4-NPs in oysters decreased significantly after the year 2008. This drop in 4-NPs level can be attributed to environmental regulations that banned 4-NPs as additives in household cleaning agents since January 2008 in Taiwan. Due to the mentioned reasons, oysters are concluded to be useful organic pollutant concentration indicators in marine environments.

Effects of augmentation of coarse particulate organic matter on metabolism and nutrient retention in hyporheic sediments

Treesearch

C.L. Crenshaw; H.M. Valett; J.R. Webster

2002-01-01

1. Metabolic and biogeochemical processes in hyporheic zones may depend on inputs of coarse particulate organic matter. Our research focused on how differing quantity and quality of organic matter affects metabolism and nutrient retention in the hyporheic zone of a first-order Appalachian stream. 2. Sixteen plots were established on a tributary of Hugh White Creek, NC...

Ductile shear in granitic gneisses adjacent to the Beaver Creek fault zone, northwest lowlands, New York State

DOE Office of Scientific and Technical Information (OSTI.GOV)

Marcoline, J.

1993-03-01

Greenville-age rocks are exposed in the Beaver Creek area in the Northwest Lowlands of New York State. The prominent structural grain in the area strikes approximately N40E and is defined by a series of metasedimentary and metaigneous rocks elongate parallel to the Beaver Creek Fault Zone. A series of 7 granitic augen gneiss bodies lies to the west of the fault. These bodies are elongate parallel to the Beaver Creek Fault Zone and are bordered by metasedimentary units. Structural analysis of the 7 granitic gneiss bodies shows that the bodies underwent several phases of ductile shear. These shearing events aremore » responsible for both fabric development and the overall shape of the bodies. The granitic gneiss is a well-foliated and lineated augen gneiss. The foliation is defined by biotite alignment, quartz ribbons, and feldspar augen. The foliation has a strike of N42E, with dips ranging from 85SE to vertical. Quartz ribbon lineations plunge 20--25 NE. The gneiss exhibits three distinct ductile shear fabrics showing oblique slip with a large strike-slip component. Fabric asymmetry indicates oblique slip with a large component of sinistral shear. The second shear fabric is somewhat recovered but not annealed. Quartz ribbons are dominantly monogranular and many show pronounced undulose extinction. Feldspar porphyroclasts form well-defined sigma grains showing a component of sinistral shear. The youngest ductile shear fabric is defined by quartz grain shape preferred orientation and mica fish. This third fabric exhibits a component of dextral shear, rather than sinistral shear. A late cataclastic texture crosscuts the earlier ductile fabrics. The elongate character of the 7 bodies and their NE/SE alignment is probably due to the regional shearing processes responsible for forming the fabric in the rocks.« less

Environmental Assessment of the City of El Cerrito, CA: Creek, Trash and Air Quality Analysis

NASA Astrophysics Data System (ADS)

Moore, A.; Ilan, A.

2015-12-01

The City of El Cerrito, CA is located within Western Contra Costa County and adjacent to the San Francisco Bay. Local land-uses that affect its overall public and environmental health include major freeways, railways, and commercial and industrial zones. In an effort to assess the overall health of the local environment, students at Korematsu Middle School conducted a comprehensive analysis that included street litter auditing, water monitoring of Cerritos Creek and air quality measurements made along local streets. In 2014 the City of El Cerrito adopted a long-term trash plan that included strategies for reducing trash loads of local stormwater sewer systems. This plan called for load reduction of 70% by July 1, 2017 and 100% by July 1, 2022. To evaluate the effectiveness of the trash plan, our team quantified and scored trash concentration levels at two locations—one in a residential neighborhood and the other in a commercial zone. We also monitored water quality at nearby Cerritos Creek to investigate the impacts that each area's trash concentrations had on water quality. We also monitored particulate matter (PM) concentration levels in air within these locations to determine whether or not differences exist between residential and commercial areas. Preliminary analysis of litter data suggests that the Long Term Trash Plan has thus far been effective in reducing concentrations of street litter along San Pablo Avenue, which is located within a major commercial zone, but has been inadequate in reducing trash in nearby parks. Water quality results indicate that Cerritos Creek contains waters that are quite healthy with respect to Ammonia and Nitrate concentration levels (i.e., very low values for every sample collected). However, elevated concentration levels of Phosphates were detected in every sample collected. Air quality data surprisingly revealed that extremely high PM concentration levels occur in air surrounding a residential park in El Cerrito.

Change in the magnetic properties of bituminous coal intruded by an igneous dike, Dutch Creek Mine, Pitkin County, Colorado

USGS Publications Warehouse

Thorpe, A.N.; Senftle, F.E.; Finkelman, R.B.; Dulong, F.T.; Bostick, N.H.

1998-01-01

Magnetization measurements have been made on natural coke-coal samples collected at various distances from a felsic porphyry dike in a coal seam in Dutch Creek Mine, Colorado to help characterize the nature and distribution of the iron-bearing phases. The magnetization passes through a maximum at the coke-to-coal transition about 31 cm from the dike contact. The magnetic measurements support the geochemical data indicating that magmatic fluids along with a high-temperature gas pulse moved into the coal bed. Interaction of the magmatic fluids with the coal diminished the reducing power of the thermal gas pulse from the dike to a point about 24 cm into the coal. The hot reducing gas penetrated further and produced a high temperature (~400-525??C) zone (at about 31 cm) just ahead of the magmatic fluids. Metallic iron found in this zone is the principal cause of the observed high magnetization. Beyond this zone, the temperature was too low to alter the coal significantly.Magnetization measurements have been made on natural coke-coal samples collected at various distances from a felsic porphyry dike in a coal seam in Dutch Creek Mine, Colorado to help characterize the nature and distribution of the iron-bearing phases. The magnetization passes through a maximum at the coke-to-coal transition about 31 cm from the dike contact. The magnetic measurements support the geochemical data indicating that magmatic fluids along with a high-temperature gas pulse moved into the coal bed. Interaction of the magmatic fluids with the coal diminished the reducing power of the thermal gas pulse from the dike to a point about 24 cm into the coal. The hot reducing gas penetrated further and produced a high temperature (approximately 400-525 ??C) zone (at about 31 cm) just ahead of the magmatic fluids. Metallic iron found in this zone is the principal cause of the observed high magnetization. Beyond this zone, the temperature was too low to alter the coal significantly.

A norovirus outbreak associated with consumption of NSW oysters: implications for quality assurance systems.

PubMed

Huppatz, Clare; Munnoch, Sally A; Worgan, Tory; Merritt, Tony D; Dalton, Craig; Kelly, Paul M; Durrheim, David N

2008-03-01

Norovirus is a common cause of gastroenteritis outbreaks associated with raw shellfish consumption. In Australia there have been several reports of norovirus outbreaks associated with oysters despite the application of regulatory measures recommended by Food Standards Australia New Zealand. This study describes an outbreak of norovirus gastroenteritis following the consumption of New South Wales oysters. In September 2007, OzFoodNet conducted a cohort study of a gastroenteritis outbreak amongst people that had dined at a Port Macquarie restaurant. Illness was strongly associated with oyster consumption, with all cases having eaten oysters from the same lease (RR undefined, p < 0.0001). Norovirus was detected in a faecal specimen. Although no pathogen was identified during the environmental investigation, the source oyster lease had been closed just prior to harvesting due to sewage contamination. Australian quality assurance programs do not routinely test oysters for viral contamination that pose a risk to human health. It is recommended that the feasibility of testing oysters for norovirus, particularly after known faecal contamination of oyster leases, be assessed.

Does restoring oyster reefs restore oyster health?

USDA-ARS?s Scientific Manuscript database

American colonists found native oyster reefs so plentiful that oysters, with tobacco and spirits, completed the triumvirate of necessities, and their discarded shells paved the earliest colonial streets from New England down to the Gulf Coast. Industrialization and dredging, however, had devastating...

Pyrosequencing Analysis of Norovirus Genogroup II Distribution in Sewage and Oysters: First Detection of GII.17 Kawasaki 2014 in Oysters.

PubMed

Pu, Jian; Kazama, Shinobu; Miura, Takayuki; Azraini, Nabila Dhyan; Konta, Yoshimitsu; Ito, Hiroaki; Ueki, You; Cahyaningrum, Ermaya Eka; Omura, Tatsuo; Watanabe, Toru

2016-12-01

Norovirus GII.3, GII.4, and GII.17 were detected using pyrosequencing in sewage and oysters in January and February 2015, in Japan. The strains in sewage and oyster samples were genetically identical or similar, predominant strains belonging to GII.17 Kawasaki 2014 lineage. This is the first report of GII.17 Kawasaki 2014 in oysters.

A Spirochaete is suggested as the causative agent of Akoya oyster disease by metagenomic analysis

PubMed Central

Yasuike, Motoshige; Fujiwara, Atushi; Nakamura, Yoji; Takano, Tomokazu; Takeuchi, Takeshi; Satoh, Noriyuki; Adachi, Yoshikazu; Tsuchihashi, Yasushi; Aoki, Hideo; Odawara, Kazushi; Iwanaga, Shunsuke; Kurita, Jun; Kamaishi, Takashi; Nakayasu, Chihaya

2017-01-01

Mass mortality that is acompanied by reddish browning of the soft tissues has been occurring in cultured pearl oyster, Pinctada fucata martensii. The disease is called Akoya oyster disease (AOD). Although spreading pattern of the disease and transmission experiments suggest that the disease is infectious, the causative agent has not yet been identified. We used shotgun and 16S rRNA-based metagenomic analysis to identify genes that are present specifically in affected oysters. The genes found only in diseased oysters were mostly bacterial origin, suggesting that the causative agent was a bacterial pathogen. This hypothesis was supported by the inhibition of AOD development in naïve oysters injected with the hemolymph of diseased animals followed immediately with penicillin bath-administration. Further analyses of the hemolymph and mantle specifically and universally detected genes of bacteria that belong to phylum Spirochaetes in diseased pearl oysters but not in healthy oysters. By in situ hybridization or immunostaining, a Brachyspira-like bacterium was observed in the smears of hemolymph from affected oysters, but not from healthy oysters. Phylogenetic analysis using 16S rRNA sequences showed that the presumptive causative bacterium was outside of but most closely related to family Brachyspiraceae. We propose ‘Candidatus Maribrachyspira akoyae’ gen. nov, sp nov., for this bacterium. PMID:28771537

Geochemical and mineralogical controls on metal(loid) mobility in the oxide zone of the Prairie Creek Deposit, NWT

DOE Office of Scientific and Technical Information (OSTI.GOV)

Stavinga, Drew; Jamieson, Heather; Layton-Matthews, Daniel

2017-02-01

Prairie Creek is an unmined high grade Zn-Pb-Ag deposit in the southern Mackenzie Mountains of the Northwest Territories, located in a 320 km2 enclave surrounded by the Nahanni National Park reserve. The upper portion of the quartz-carbonate-sulphide vein mineralization has undergone extensive oxidation, forming high grade zones, rich in smithsonite (ZnCO3) and cerussite (PbCO3). This weathered zone represents a significant resource and a potential component of mine waste material. This study is focused on characterizing the geochemical and mineralogical controls on metal(loid) mobility under mine waste conditions, with particular attention to the metal carbonates as a potential source of tracemore » elements to the environment. Analyses were conducted using a combination of microanalytical techniques (electron microprobe, scanning electron microscopy with automated mineralogy, laser-ablation inductively-coupled mass spectrometry, and synchrotron-based element mapping, micro-X-ray diffraction and micro-X-ray absorbance). The elements of interest included Zn, Pb, Ag, As, Cd, Cu, Hg, Sb and Se.« less

Genotype, soil type, and locale effects on reciprocal transplant vigor, endophyte growth, and microbial functional diversity of a narrow sagebrush hybrid zone in Salt Creek Canyon, Utah

USGS Publications Warehouse

Miglia, K.J.; McArthur, E.D.; Redman, R.S.; Rodriguez, R.J.; Zak, J.C.; Freeman, D.C.

2007-01-01

When addressing the nature of ecological adaptation and environmental factors limiting population ranges and contributing to speciation, it is important to consider not only the plant's genotype and its response to the environment, but also any close interactions that it has with other organisms, specifically, symbiotic microorganisms. To investigate this, soils and seedlings were reciprocally transplanted into common gardens of the big sagebrush hybrid zone in Salt Creek Canyon, Utah, to determine location and edaphic effects on the fitness of parental and hybrid plants. Endophytic symbionts and functional microbial diversity of indigenous and transplanted soils and sagebrush plants were also examined. Strong selection occurred against the parental genotypes in the middle hybrid zone garden in middle hybrid zone soil; F1 hybrids had the highest fitness under these conditions. Neither of the parental genotypes had superior fitness in their indigenous soils and habitats; rather F1 hybrids with the nonindigenous maternal parent were superiorly fit. Significant garden-by-soil type interactions indicate adaptation of both plant and soil microorganisms to their indigenous soils and habitats, most notably in the middle hybrid zone garden in middle hybrid zone soil. Contrasting performances of F1 hybrids suggest asymmetrical gene flow with mountain, rather than basin, big sagebrush acting as the maternal parent. We showed that the microbial community impacted the performance of parental and hybrid plants in different soils, likely limiting the ranges of the different genotypes.

Evidence of exceptional oyster-reef resilience to fluctuations in sea level.

PubMed

Ridge, Justin T; Rodriguez, Antonio B; Fodrie, F Joel

2017-12-01

Ecosystems at the land-sea interface are vulnerable to rising sea level. Intertidal habitats must maintain their surface elevations with respect to sea level to persist via vertical growth or landward retreat, but projected rates of sea-level rise may exceed the accretion rates of many biogenic habitats. While considerable attention is focused on climate change over centennial timescales, relative sea level also fluctuates dramatically (10-30 cm) over month-to-year timescales due to interacting oceanic and atmospheric processes. To assess the response of oyster-reef ( Crassostrea virginica ) growth to interannual variations in mean sea level (MSL) and improve long-term forecasts of reef response to rising seas, we monitored the morphology of constructed and natural intertidal reefs over 5 years using terrestrial lidar. Timing of reef scans created distinct periods of high and low relative water level for decade-old reefs ( n  = 3) constructed in 1997 and 2000, young reefs ( n  = 11) constructed in 2011 and one natural reef (approximately 100 years old). Changes in surface elevation were related to MSL trends. Decade-old reefs achieved 2 cm/year growth, which occurred along higher elevations when MSL increased. Young reefs experienced peak growth (6.7 cm/year) at a lower elevation that coincided with a drop in MSL. The natural reef exhibited considerable loss during the low MSL of the first time step but grew substantially during higher MSL through the second time step, with growth peaking (4.3 cm/year) at MSL, reoccupying the elevations previously lost. Oyster reefs appear to be in dynamic equilibrium with short-term (month-to-year) fluctuations in sea level, evidencing notable resilience to future changes to sea level that surpasses other coastal biogenic habitat types. These growth patterns support the presence of a previously defined optimal growth zone that shifts correspondingly with changes in MSL, which can help guide oyster-reef conservation and restoration.

Non-indigenous predators threaten ecosystem engineers: Interactive effects of green crab and oyster size on American oyster mortality.

PubMed

Pickering, Tyler R; Poirier, Luke A; Barrett, Timothy J; McKenna, Shawn; Davidson, Jeff; Quijón, Pedro A

2017-06-01

Non-indigenous green crabs (Carcinus maenas) are emerging as important predators of autogenic engineers like American oysters (Crassostrea virginica) throughout the eastern seaboard of Canada and the United States. To document the spreading distribution of green crabs, we carried out surveys in seven sites of Prince Edward Island during three fall seasons. To assess the potential impact of green crabs on oyster mortality in relation to predator and prey size, we conducted multiple predator-prey manipulations in the field and laboratory. The surveys confirmed an ongoing green crab spread into new productive oyster habitats while rapidly increasing in numbers in areas where crabs had established already. The experiments measured mortality rates on four sizes of oysters exposed to three sizes of crab, and lasted 3-5 days. The outcomes of experiments conducted in Vexar ® bags, laboratory tanks and field cages were consistent and were heavily dependent on both crab size and oyster size: while little predation occurred on large oysters, large and medium green crabs preyed heavily on small sizes. Oysters reached a refuge within the 35-55 mm shell length range; below that range, oysters suffered high mortality due to green crab predation and thus require management measures to enhance their survival. These results are most directly applicable to aquaculture operations and restoration initiatives but have implications for oyster sustainability. Copyright © 2017 Elsevier Ltd. All rights reserved.

Differential proteomic responses of selectively bred and wild-type Sydney rock oyster populations exposed to elevated CO2.

PubMed

Thompson, E L; O'Connor, W; Parker, L; Ross, P; Raftos, D A

2015-03-01

Previous work suggests that larvae from Sydney rock oysters that have been selectively bred for fast growth and disease resistance are more resilient to the impacts of ocean acidification than nonselected, wild-type oysters. In this study, we used proteomics to investigate the molecular differences between oyster populations in adult Sydney rock oysters and to identify whether these form the basis for observations seen in larvae. Adult oysters from a selective breeding line (B2) and nonselected wild types (WT) were exposed for 4 weeks to elevated pCO2 (856 μatm) before their proteomes were compared to those of oysters held under ambient conditions (375 μatm pCO2 ). Exposure to elevated pCO2 resulted in substantial changes in the proteomes of oysters from both the selectively bred and wild-type populations. When biological functions were assigned, these differential proteins fell into five broad, potentially interrelated categories of subcellular functions, in both oyster populations. These functional categories were energy production, cellular stress responses, the cytoskeleton, protein synthesis and cell signalling. In the wild-type population, proteins were predominantly upregulated. However, unexpectedly, these cellular systems were downregulated in the selectively bred oyster population, indicating cellular dysfunction. We argue that this reflects a trade-off, whereby an adaptive capacity for enhanced mitochondrial energy production in the selectively bred population may help to protect larvae from the effects of elevated CO2 , whilst being deleterious to adult oysters. © 2015 John Wiley & Sons Ltd.

Effect of linear alkylbenzene mixtures and sanitary sewage in biochemical and molecular responses in pacific oyster Crassostrea gigas.

PubMed

Flores-Nunes, Fabrício; Mattos, Jacó J; Zacchi, Flávia L; Serrano, Miguel A S; Piazza, Clei E; Sasaki, Silvio T; Taniguchi, Satie; Bicego, Márcia C; Melo, Cláudio M R; Bainy, Afonso C D

2015-11-01

Urban effluents are rich in nutrients, organic matter, pharmaceuticals and personal care products (PPCPs), pesticides, hydrocarbons, surfactants, and others. Previous studies have shown that oysters Crassostrea gigas accumulate significant levels of linear alkylbenzenes (LABs) in sanitary sewage contaminated sites, but there is little information about its toxicological effects in marine bivalves. The aim of this study was to analyze the transcription of genes in two tissues of C. gigas exposed for 12, 24, and 36 h to LABs or sanitary sewage. Likewise, the activity of antioxidant and biotransformation enzymes was measured in oysters exposed for 36 h in all groups. Oysters exposed to LABs and oysters exposed to sanitary sewage showed different patterns of transcriptional responses. LAB-exposed oysters showed lower level of biological responses than the oysters exposed to sanitary sewage. Despite the ability of the oyster C. gigas to accumulate LABs (28-fold), the data indicate that these contaminants are not the cause for the transcriptional responses observed in oysters exposed to sanitary sewage. Possibly, the biological changes observed in the sanitary sewage-exposed oysters are associated with the presence of other contaminants, which might have caused synergistic, additive, or antagonistic effects. The results show that FABP-like and GST-ω-like messenger RNAs (mRNAs) have a rapid response in tissues of oyster C. gigas exposed to sanitary sewage, suggesting a possible protective response and a role in maintaining homeostasis of these organisms.

Factors affecting the uptake and retention of Vibrio vulnificus in oysters.

PubMed

Froelich, Brett A; Noble, Rachel T

2014-12-01

Vibrio vulnificus, a bacterium ubiquitous in oysters and coastal water, is capable of causing ailments ranging from gastroenteritis to grievous wound infections or septicemia. The uptake of these bacteria into oysters is often examined in vitro by placing oysters in seawater amended with V. vulnificus. Multiple teams have obtained similar results in studies where laboratory-grown bacteria were observed to be rapidly taken up by oysters but quickly eliminated. This technique, along with suggested modifications, is reviewed here. In contrast, the natural microflora within oysters is notoriously difficult to eliminate via depuration. The reason for the transiency of exogenous bacteria is that those bacteria are competitively excluded by the oyster's preexisting microflora. Evidence of this phenomenon is shown using in vitro oyster studies and a multiyear in situ case study. Depuration of the endogenous oyster bacteria occurs naturally and can also be artificially induced, but both of these events require extreme conditions, natural or otherwise, as explained here. Finally, the "viable but nonculturable" (VBNC) state of Vibrio is discussed. This bacterial torpor can easily be confused with a reduction in bacterial abundance, as bacteria in this state fail to grow on culture media. Thus, oysters collected from colder months may appear to be relatively free of Vibrio but in reality harbor VBNC cells that respond to exogenous bacteria and prevent colonization of oyster matrices. Bacterial-uptake experiments combined with studies involving cell-free spent media are detailed that demonstrate this occurrence, which could explain why the microbial community in oysters does not always mirror that of the surrounding water. Copyright © 2014, American Society for Microbiology. All Rights Reserved.

Sedimentary Characteristics Relating To Artificially Intensified Flow Patterns At Dona And Roberts Bay, West-central Florida

NASA Astrophysics Data System (ADS)

Kelso, K. W.; Wang, P.

2006-12-01

The Dona and Roberts Bay connects one of the five major watersheds in Sarasota County Florida to the Gulf of Mexico via the Venice Inlet. Like many watersheds in the area, significant modifications have been made to the drainage basins, principally to the main tributaries. Many of the creeks that comprise the watershed have been dammed in order to inhibit the upstream flow of salt water. They are also deepened or lengthened to allow better drainage. In addition, there are numerous oyster bars, as well as artificial structures that impose obstruction to the tidal and river flows. These have resulted in a complex sedimentation and erosion pattern with substantial anthropogenic influences. The objectives of this study are to quantify the sediment characteristics and deposition-erosion trends and their relationship to the flow patterns. A detailed sedimentary analysis was conducted based on 149 surface sediment samples and 29 drill cores. Spatial distribution of the sediment properties is quite complex, controlled by several interactive factors including local sediment supply, intensity of the hydrodynamic processes, distribution of oyster bars and mangrove islands, and artificial structures. Sedimentation and erosion is significantly influenced by flood events. The core data suggest that rapid sedimentation driven by flood events is responsible for the development of some of the large shoals. A 2- D depth-averaged circulation model was established for the study area on a bathymetry that was surveyed by this study. Many of the artificial modifications to the watershed system are incorporated. A close relationship between the flow intensity and sediment characteristics and sedimentation-erosion tendency is identified.

Base (100-year) flood elevations for selected sites in Livingston County, Missouri

USGS Publications Warehouse

Southard, Rodney E.; Richards, Joseph M.

2002-01-01

The primary criteria for community participation in the National Flood Insurance Program is the adoption and enforcement of floodplain management requirements that minimize the potential for flood damages to existing and proposed development in flood-hazard areas. This report provides base flood elevations (BFE) for a 100-year recurrence-interval flood for use in the management and regulation of 18 flood-hazard areas designated by the Federal Emergency Management Agency as approximate Zone A areas in Livingston County, Missouri. The one-dimensional surface-water flow models HEC-RAS and Water-Surface PROfile (WSPRO) were used to compute base (100-year) flood elevations for 18 Zone A sites. The HEC-RAS model was used at BFE sites 1 to 6, 9, 10, and 15 to 18. The WSPRO model was used at BFE sites 7, 8, and 11 to 14. The 18 sites are all located in Livingston County, Missouri, at U.S., State, or County road crossings, and the base flood elevation was determined at the upstream side of each crossing. The base (100-year) flood elevations for BFE 1, 2, and 3 on Shoal Creek at Dawn and Shoal Creek Drainage Ditch near Dawn are 701.0, 701.0, and 696.5 feet, respectively. The base (100-year) flood elevations for BFE 4 and 5 on Indian Branch near Sampsel and a tributary to Indian Branch near Sampsel are 711.7 and 755.4 feet, respectively. Site BFE 6 is located on Honey Creek near Farmersville and the base (100-year) flood elevation for this site is 730.8 feet. One site (BFE 7) is located on No Creek near Farmersville. The base (100-year) flood elevation for this site is 731.3 feet. Site BFE 8 is located on Crooked Creek near Chillicothe and the base (100-year) elevation is 716.4 feet. One site (BFE 9) is located on a tributary to Coon Creek at Chillicothe. The base (100-year) flood elevation for this site is 734.9 feet. Two sites (BFE 10 and 11) are located on Blackwell Branch at Chillicothe. The base (100-year) flood elevation for BFE 10 is 738.9 feet and for BFE 11 is 701.7 feet. The base (100-year) flood elevation for BFE 12 on Medicine Creek near Chula is 721.7 feet. Sites BFE 13 and 15 are on Muddy Creek and for BFE 14 is on Little Muddy Creek near Chula. The base (100-year) flood elevations for BFE 13 and 15 are 733.0 and 717.9 feet, respectively and for BFE 14 is 734.6 feet. Downstream from BFE 12 is site BFE 16 on Medicine Creek near Wheeling. The base (100-year) flood elevation for site BFE 16 is 686.1 feet. One site (BFE 17) is located on Campbell Creek near Bedford. The base (100-year) flood elevation at this site is 691.8 feet. Site BFE 18 is located on Towstring Creek near Hale. The base (100-year) flood elevation for site BFE 18 is 667.4 feet.

Hemolymph chemistry and histopathological changes in Pacific oysters (Crassostrea gigas) in response to low salinity stress.

PubMed

Knowles, Graeme; Handlinger, Judith; Jones, Brian; Moltschaniwskyj, Natalie

2014-09-01

This study described seasonal differences in the histopathological and hemolymph chemistry changes in different family lines of Pacific oysters, Crassostrea gigas, in response to the stress of an abrupt change to low salinity, and mechanical grading. The most significant changes in pallial cavity salinity, hemolymph chemistry and histopathological findings occurred in summer at low salinity. In summer (water temperature 18°C) at low salinity, 9 (25.7% of full salinity), the mean pallial cavity salinity in oysters at day 3 was 19.8±1.6 (SE) and day 10 was 22.8±1.6 (SE) lower than oysters at salinity 35. Associated with this fall in pallial cavity salinity, mean hemolymph sodium for oysters at salinity 9 on day 3 and 10 were 297.2mmol/L±20(SE) and 350.4mmol/L±21.3(SE) lower than oysters at salinity 35. Similarly mean hemolymph potassium in oysters held at salinity 9 at day 3 and 10 were 5.6mmol/L±0.6(SE) and 7.9mmol/L±0.6 (SE) lower than oysters at salinity 35. These oysters at low salinity had expanded intercellular spaces and significant intracytoplasmic vacuolation distending the cytoplasm of epithelial cells in the alimentary tract and kidney and hemocyte infiltrate (diapedesis) within the alimentary tract wall. In contrast, in winter (water temperature 8°C) oyster mean pallial cavity salinity only fell at day 10 and this was by 6.0±0.6 (SE) compared to that of oysters at salinity 35. There were limited histopathological changes (expanded intercellular spaces and moderate intracytoplasmic vacuolation of renal epithelial cells) in these oysters at day 10 in low salinity. Mechanical grading and family line did not influence the oyster response to sudden low salinity. These findings provide additional information for interpretation of non-lethal, histopathological changes associated with temperature and salinity variation. Copyright © 2014 Elsevier Inc. All rights reserved.

Integrated application of transcriptomics and metabolomics provides insights into glycogen content regulation in the Pacific oyster Crassostrea gigas.

PubMed

Li, Busu; Song, Kai; Meng, Jie; Li, Li; Zhang, Guofan

2017-09-11

The Pacific oyster Crassostrea gigas is an important marine fishery resource, which contains high levels of glycogen that contributes to the flavor and the quality of the oyster. However, little is known about the molecular and chemical mechanisms underlying glycogen content differences in Pacific oysters. Using a homogeneous cultured Pacific oyster family, we explored these regulatory networks at the level of the metabolome and the transcriptome. Oysters with the highest and lowest natural glycogen content were selected for differential transcriptome and metabolome analysis. We identified 1888 differentially-expressed genes, seventy-five differentially-abundant metabolites, which are part of twenty-seven signaling pathways that were enriched using an integrated analysis of the interaction between the differentially-expressed genes and the differentially-abundant metabolites. Based on these results, we found that a high expression of carnitine O-palmitoyltransferase 2 (CPT2), indicative of increased fatty acid degradation, is associated with a lower glycogen content. Together, a high level of expression of phosphoenolpyruvate carboxykinase (PEPCK), and high levels of glucogenic amino acids likely underlie the increased glycogen production in high-glycogen oysters. In addition, the higher levels of the glycolytic enzymes hexokinase (HK) and pyruvate kinase (PK), as well as of the TCA cycle enzymes malate dehydrogenase (MDH) and pyruvate carboxylase (PYC), imply that there is a concomitant up-regulation of energy metabolism in high-glycogen oysters. High-glycogen oysters also appeared to have an increased ability to cope with stress, since the levels of the antioxidant glutathione peroxidase enzyme 5 (GPX5) gene were also increased. Our results suggest that amino acids and free fatty acids are closely related to glycogen content in oysters. In addition, oysters with a high glycogen content have a greater energy production capacity and a greater ability to cope with stress. These findings will not only provide insights into the molecular mechanisms underlying oyster quality, but also promote research into the molecular breeding of oysters.

Real-time PCR quantification of Vibrio parahaemolyticus in oysters using an alternative matrix.

PubMed

Kaufman, G E; Blackstone, G M; Vickery, M C L; Bej, A K; Bowers, J; Bowen, Michael D; Meyer, Richard F; DePaola, A

2004-11-01

This study examined the relationship between levels of total Vibrio parahaemolyticus found in oyster tissues and mantle fluid with the goal of using mantle fluid as a template matrix in a new quantitative real-time PCR assay targeting the thermolabile hemolysin (tlh) gene for the enumeration of total V. parahaemolyticus in oysters. Oysters were collected near Mobile Bay, Ala., in June, July, and September and tested immediately after collection and storage at 26 degrees C for 24 h. Initial experiments using DNA colony hybridization targeting tlh demonstrated that natural V. parahaemolyticus levels in the mantle fluid of individual oysters were strongly correlated (r = 0.85, P < 0.05) with the levels found in their tissues. When known quantities of cultured V. parahaemolyticus cells were added to real-time PCR reactions that contained mantle fluid and oyster tissue matrices separately pooled from multiple oysters, a strong linear correlation was observed between the real-time PCR cycle threshold and the log concentration of cells inoculated into each PCR reaction (mantle fluid: r = 0.98, P < 0.05; and oyster: r = 0.99, P < 0.05). However, the mantle fluid exhibited less inhibition of the PCR amplification than the homogenized oyster tissue. Analysis of natural V. parahaemolyticus populations in mantle fluids using both colony hybridization and real-time PCR demonstrated a significant (P < 0.05) but reduced correlation (r = -0.48) between the two methods. Reductions in the efficiency of the real-time PCR that resulted from low population densities of V. parahaemolyticus and PCR inhibitors present in the mantle fluid of some oysters (with significant oyster-to-oyster variation) contributed to the reduction in correlation between the methods that was observed when testing natural V. parahaemolyticus populations. The V. parahaemolyticus-specific real-time PCR assay used for this study could estimate elevated V. parahaemolyticus levels in oyster mantle fluid within 1 h from sampling time.

Faunal community use of enhanced and natural oyster reefs in Delaware Bay: A field study and classroom inquiry

NASA Astrophysics Data System (ADS)

Paterno, Jenny L.

In addition to its value as a fisheries resource, the eastern oyster Crassostrea virginica, is a reef building, cornerstone species that provides ecosystem services to the environment. Oysters provide habitat for associated resident and transient species. With widespread declines in oyster populations, restoration efforts have focused on improving oyster stocks and enhancing the ecosystem services they provide. Community-based oyster restoration programs engage the public and local community in planning, construction and/or monitoring of restoration projects. Since 2007, a K-12 student centered community-based restoration venture, Project PORTS, Promoting Oyster Restoration Through Schools, has been working to educate students, promote stewardship values, and enhance oyster habitat in the Delaware Bay. The overarching goals of the present study were to (1) assess fish and macroinvertebrate utilization on the Project PORTS community-created, subtidal, low-relief oyster restoration area in the Delaware Bay, and (2) convert the data collected into a STEM (Science, Technology, Engineering and Mathematics) activity that can be implemented in the classroom. I examined six subtidal natural oyster reefs of varying oyster densities and one community-based restoration reef as habitat for fishes and invertebrates. Sampling methods on these low-relief reefs consisted of otter trawl tows and benthic habitat tray collections. Results revealed that the enhancement area supported a diverse faunal community consistent with nearby, natural oyster habitats. Data collected during the field study were then transformed into an educational lesson plan, "One Fish, Two Fish-Assessing Habitat Value of Restored Oyster Reefs", that fulfilled national and state (NJ) curriculum standards. The lesson was piloted in a middle school classroom and student learning was evaluated through summative assessments pre and post-participation in the activity. Results of the assessments indicated that students made strong gains in knowledge of oyster ecology and improved analytical skills by graphing data. This dual interest study demonstrated that a novel education program with a local, real-world connection positively enhanced crucial estuarine habitat while expanding STEM knowledge and skills of participating students.

Hydrothermal and metamorphic berthierine from the Kidd Creek volcanogenic massive sulfide deposit, Timmins, Ontario

USGS Publications Warehouse

Slack, J.F.; Wei-Teh, Jiang; Peacor, D.R.; Okita, P.M.

1992-01-01

Berthierine, a 7 A?? Fe-Al member of the serpentine group, occurs in the footwall stringer zone of the Archean Kidd Creek massive sulfide deposit, associated with quartz, muscovite, chlorite, pyrite, sphalerite, chalcopyrite, and local tourmaline, cassiterite, and halloysite. Petrographic and scanning electron microscopic (SEM) studies reveal different types of berthierine occurrences, including interlayers within the rims on deformed chlorite, intergrowths with muscovite and halloysite, and discrete coarse grains. This is the first reported occurrence of berthierine from volcanogenic massive sulfide deposits. Textural relations suggest that most of the berthierine formed as a primary hydrothermal mineral at relatively high temperatures (~350??C) in the footwall stringer zone, probably by the replacement of a pre-existing aluminous phase such as muscovite or chlorite. However, the intergrowth textures observed by SEM and TEM suggest that some of the berthierine originated by syn- or post-metamorphic replacement of chlorite. -from Authors

Denman Island disease (causative agent Mikrocytos mackini) in a new host, Kumamoto oysters Crassostrea sikamea.

PubMed

Elston, Ralph A; Moore, James; Abbott, Cathryn L

2012-12-03

Mikrocytos mackini, causative agent of Denman Island disease in Pacific oysters Crassostrea gigas and other oyster species, was found in 2011 in a previously unreported host, the Kumamoto oyster C. sikamea, in Humboldt Bay, California, USA. The detection was also the first reported finding of M. mackini in California. Prevalence was estimated as high as approximately 27% from pooled samples analyzed by PCR. Higher prevalence appeared related to longer residence time in the bay and somewhat colder than typical winter seawater temperatures. No M. mackini was detected in Humboldt Bay juvenile Kumamoto oysters or Pacific oyster brood or seed stock in 2011 or 2012.

Soundscapes and Larval Settlement: Larval Bivalve Responses to Habitat-Associated Underwater Sounds.

PubMed

Eggleston, David B; Lillis, Ashlee; Bohnenstiehl, DelWayne R

2016-01-01

We quantified the effects of habitat-associated sounds on the settlement response of two species of bivalves with contrasting habitat preferences: (1) Crassostrea virginicia (oyster), which prefers to settle on other oysters, and (2) Mercenaria mercenaria (clam), which settles on unstructured habitats. Oyster larval settlement in the laboratory was significantly higher when exposed to oyster reef sound compared with either off-reef or no-sound treatments. Clam larval settlement did not vary according to sound treatments. Similar to laboratory results, field experiments showed that oyster larval settlement in "larval housings" suspended above oyster reefs was significantly higher compared with off-reef sites.

Behavior of pathogenic bacteria in the oyster, Crassostrea commercialis, during depuration, re-laying, and storage.

PubMed Central

Son, N T; Fleet, G H

1980-01-01

Oysters (Crassostrea commercials) harvested from major cultivation areas within the state of New South Wales, Australia, were commonly contaminated with low levels of the food-poisoning organisms Bacillus cereus, Clostridium perfringens, and Vibrio parahaemolyticus. Salmonella was found in oysters on only one occasion. These bacteria were cleansed from oysters during oyster purification by re-laying in a non-polluted waterway. Oysters were laboratory contaminated to levels in excess 1,000 cells per g with either B. cereus, C. perfringens, V. parahaemolyticus, Salmonella typhimurium, or S. senftenberg. These species were cleansed from such oysters during purification in a laboratory depuration unit that used ultraviolet light for sterilizing the depuration water. Escherichia coli was also cleansed from oysters under the same re-laying or depuration conditions so that its measurement alone could be used to indicate the cleansing of the above pathogenic species. The levels of these bacteria were also measured during the storage of oysters under conditions that occur during marketing. While B. cereus counts remained relatively stable during storage, the Salmonella spp. gradually decreased in numbers and C. perfringens rapidly died off. V. parahaemolyticus counts increased slightly during the first 4 days of storage, after which decreases occurred. PMID:6257164

Behavior of pathogenic bacteria in the oyster, Crassostrea commercialis, during depuration, re-laying, and storage.

PubMed

Son, N T; Fleet, G H

1980-12-01

Oysters (Crassostrea commercials) harvested from major cultivation areas within the state of New South Wales, Australia, were commonly contaminated with low levels of the food-poisoning organisms Bacillus cereus, Clostridium perfringens, and Vibrio parahaemolyticus. Salmonella was found in oysters on only one occasion. These bacteria were cleansed from oysters during oyster purification by re-laying in a non-polluted waterway. Oysters were laboratory contaminated to levels in excess 1,000 cells per g with either B. cereus, C. perfringens, V. parahaemolyticus, Salmonella typhimurium, or S. senftenberg. These species were cleansed from such oysters during purification in a laboratory depuration unit that used ultraviolet light for sterilizing the depuration water. Escherichia coli was also cleansed from oysters under the same re-laying or depuration conditions so that its measurement alone could be used to indicate the cleansing of the above pathogenic species. The levels of these bacteria were also measured during the storage of oysters under conditions that occur during marketing. While B. cereus counts remained relatively stable during storage, the Salmonella spp. gradually decreased in numbers and C. perfringens rapidly died off. V. parahaemolyticus counts increased slightly during the first 4 days of storage, after which decreases occurred.

Microcontroller based automatic temperature control for oyster mushroom plants

NASA Astrophysics Data System (ADS)

Sihombing, P.; Astuti, T. P.; Herriyance; Sitompul, D.

2018-03-01

In the cultivation of Oyster Mushrooms need special treatment because oyster mushrooms are susceptible to disease. Mushroom growth will be inhibited if the temperature and humidity are not well controlled because temperature and inertia can affect mold growth. Oyster mushroom growth usually will be optimal at temperatures around 22-28°C and humidity around 70-90%. This problem is often encountered in the cultivation of oyster mushrooms. Therefore it is very important to control the temperature and humidity of the room of oyster mushroom cultivation. In this paper, we developed an automatic temperature monitoring tool in the cultivation of oyster mushroom-based Arduino Uno microcontroller. We have designed a tool that will control the temperature and humidity automatically by Android Smartphone. If the temperature increased more than 28°C in the room of mushroom plants, then this tool will turn on the pump automatically to run water in order to lower the room temperature. And if the room temperature of mushroom plants below of 22°C, then the light will be turned on in order to heat the room. Thus the temperature in the room oyster mushrooms will remain stable so that the growth of oyster mushrooms can grow with good quality.

Bioaccumulation and elimination of Cryptosporidium parvum oocysts in experimentally exposed Eastern oysters (Crassostrea virginica) held in static tank aquaria.

PubMed

Willis, Jessica E; McClure, J T; McClure, Carol; Spears, Jonathan; Davidson, Jeff; Greenwood, Spencer J

2014-03-03

A variety of human enteropathogens, including viruses, bacteria, and parasites, have been shown to bioaccumulate in suspension-feeding bivalve shellfish. Cryptosporidium parvum is a zoonotic protozoan parasite that has been detected in many shellfish species within both fecally contaminated and clean oyster growing areas across the globe. For this study, C. parvum oocysts (1000 and 10,000) were spiked into 10 L of water in static tank systems housing Crassostrea virginica. Oysters were either held in the contaminated aquaria for 7 days of exposure or were exposed for 24h and subsequently placed in a clean static tank system for the remainder of the trial. Individual oysters, fecal material, and tank water were analyzed for oocysts up to 7 days post-exposure via direct immunofluorescence. Oysters held under chronic exposure conditions gradually accumulated oocysts (1.5 or 34.4 oocysts/oyster/day for low or high dose exposure groups, respectively) between days 1 and 7, with an exponential uptake in oocysts observed within the first 24h post-exposure (mean uptake of 29.6 or 241.9 oocysts/oyster, respectively). Oysters that were transferred to clean water after 24h were capable of slowly depurating oocysts, following a linear trend. During chronic exposure trials 48-49% of the total spiked inoculum was recovered from oyster tissue, whereas 4.8-5.9% and 38-40% was recovered from tank water and from fecal material at day 7, respectively. In acute exposure trials, 30-31% of the total tank inoculum was found in oysters, suggesting that chronically exposed oysters were likely re-filtering some oocysts. Examinations of oyster fecal material from acute exposures revealed that 72-82% of oocysts recovered were already excreted at the time of oyster transfer (day 1), with only 18-28% being excreted during the static depuration phase. These data support that although most C. parvum oocysts are removed by C. virginica oysters within 24h, elimination after this point occurs slowly. Additionally, chronic exposures demonstrate that wild or cultured oysters in saline environments that are frequently exposed to sources of Cryptosporidium may be unable to eliminate the parasites at a rate that balances initial uptake. Copyright © 2013 Elsevier B.V. All rights reserved.

Plugging the leak: barrier island restoration following Hurricane Katrina enhances larval retention and improves salinity regime for oysters in Mobile Bay, Alabama.

PubMed

Park, Kyeong; Powers, Sean P; Bosarge, George S; Jung, Hoon-Shin

2014-03-01

Changes in geomorphology of estuaries are common following major perpetuations such as hurricanes and may have profound impacts on biological systems. Hurricane Katrina in 2005 created a new pass, called Katrina Cut, halving Dauphin Island in Mobile Bay, Alabama. Significant decline in oyster population at Cedar Point Reef, the primary oyster harvest grounds in Mobile Bay, had persisted since then until the Cut was artificially closed in 2010. A bio-physical model for hydrodynamics and oyster larval transport was used to evaluate two potential mechanisms responsible for oyster population declines: salinity changes in the context of oyster habitat suitability and retention of oyster larvae. The model results revealed that when open Katrina Cut increased salinity at Cedar Point Reef. During high freshwater discharge, in particular, water exchange through Katrina Cut increased the bottom salinity from <5 psu to well over 15 (sometimes >20) psu during the tropic tides. Elevated salinities are associated with greater predation on oysters and higher disease incidence. The presence of the Katrina Cut also reduced larval retention in the spawning area regardless of tidal or river discharge conditions. We conclude that closing the Cut likely improved conditions for oysters within Mobile Bay and eastern Mississippi Sound and that these improved conditions have contributed to increased oyster landings. Copyright © 2013 Elsevier Ltd. All rights reserved.

Dry creek long-term watershed study: assessment of immediate response of aquatic macroinvertebrates to watershed level harvesting and thinning of streamside management zones

Treesearch

M.W. Griswold; R.T. Winn; T.L. Crisman; W.R. White

2006-01-01

Streamside Management Zones (SMZs) are meant to protect riparian habitat and the stream ecosystem. Benthic macroinvertebrates are recognized bioindicators of water quality in streams, typically occupying multiple trophic levels in these systems and providing food for vertebrates. Thus, it is important to understand the effects of harvest within and adjacent to the SMZ...

The mismatch of bioaccumulated trace metals (Cu, Pb and Zn) in field and transplanted oysters (Saccostrea glomerata) to ambient surficial sediments and suspended particulate matter in a highly urbanised estuary (Sydney estuary, Australia).

PubMed

Lee, Jung-Ho; Birch, Gavin F

2016-04-01

A significant correlation between sedimentary metals, particularly the 'bio-available' fraction, and bioaccumulated metal concentrations in the native Sydney rock oyster (Saccostrea glomerata) tissues has been successfully demonstrated previously for Cu and Zn in a number of estuaries in New South Wales, Australia. However, this relationship has been difficult to establish in a highly modified estuary (Sydney estuary, Australia) where metal contamination is of greatest concern and where a significant relationship would be most useful for environmental monitoring. The use of the Sydney rock oyster as a biomonitoring tool for metal contamination was assessed in the present study by investigating relationships between metals attached to sediments and suspended particulate matter (SPM) to bioaccumulated concentrations in oyster tissues. Surficial sediments (both total and fine-fraction), SPM and wild oysters were collected over 3 years from three embayments (Chowder Bay, Mosman Bay and Iron Cove) with each embayment representing a different physiographic region of Sydney estuary. In addition, a transplant experiment of farmed oysters was conducted in the same embayments for 3 months. No relationship was observed between sediments or SPM metals (Cu, Pb and Zn) to tissue of wild oysters; however, significant relationship was observed against transplanted oysters. The mismatch between wild and farmed, transplanted oysters is perplexing and indicates that wild oysters are unsuitable to be used as a biomonitoring tool due to the involvement of unknown complex factors while transplanted oysters hold strong potential.

Impact of Environment and Ontogeny on Relative Fecundity and Egg Quality of Female Oysters (Crassostrea virginica) from Four Sites in Northern Chesapeake Bay.

PubMed

Glandon, Hillary Lane; Michaelis, Adriane K; Politano, Vincent A; Alexander, Stephanie T; Vlahovich, Emily A; Reece, Kimberly S; Koopman, Heather N; Meritt, Donald W; Paynter, Kennedy T

2016-12-01

Resource allocation to reproduction is a primary physiological concern for individuals, and can vary with age, environment, or a combination of both factors. In this study we quantified the impact of environment and individual age on the reproductive output of female oysters Crassostrea virginica. We determined the relative fecundity, egg total lipid content, and overall and omega-3/omega-6 (ω3/ω6) fatty acid signatures (FAS) of eggs spawned by female oysters over a 2-year period (n = 32 and n = 64). Variation was quantified spatially and ontogenetically by sampling young and old oyster populations from two rivers in Chesapeake Bay, totaling four collection sites. During Year 1, when oysters underwent oogenesis in different locations, overall and ω3/ω6 egg FAS varied significantly by river, with no significant differences observed in the FAS of oysters by age in Year 1. In Year 2, when oysters from different sites underwent oogenesis in a single location, no significant differences in the overall egg FAS or ω3/ω6 egg FAS by river or age were observed. These findings suggest that oysters integrate environment into their reproductive output, but that time spent growing at a specific location (in this case, represented by oyster age) plays a relatively minor role in the biochemical composition of oyster eggs. These results have consequences for our understanding of how resources are allocated from the female oyster to eggs and, more generally, the impact of environment and ontogeny on reproductive physiology.

Isotopic Fingerprint of a Hyporheic-Hypolentic Boundary

NASA Astrophysics Data System (ADS)

Aseltyne, T. A.; Fryar, A. E.; Rowe, H. D.

2005-05-01

Kentucky Lake is located in western Kentucky (USA) and is the largest reservoir on the Tennessee River. Current management practices by the Tennessee Valley Authority (TVA) dictate that water level is raised 1.5 m in March and lowered 1.5 m over a three-month period beginning in August. Ledbetter Creek, a third-order tributary to Kentucky Lake, is located on the western side of the reservoir. The mouth of Ledbetter Creek spreads out across a mudflat before discharging to an embayment attached to Kentucky Lake. The mudflat is inundated following reservoir-stage increase in the spring, and is drained in the autumn. Stable isotopes of H2O and conservative solutes, such as chloride (Cl-), were used to define the hyporheic-hypolentic boundary at the mouth of Ledbetter Creek and trace water movement associated with reservoir-stage manipulation. Three water sources were defined in the Ledbetter Creek watershed, based on isotopic composition and Cl- concentration: ground water, stream water from Ledbetter Creek, and embayment water from Kentucky Lake. At winter pool, δ2H and δ18O values decreased across the hyporheic-hypolentic boundary from -36.8 to -42.5 per mil and -6.04 to 7.24 per mil, respectively. Cl- concentrations decreased across the boundary from 3.2 to 1.3 mg/l. The profile indicates that Ledbetter Creek infiltrated into the substrate to a depth of 10 cm near the confluence with the embayment. Below this depth, isotopic values and Cl- concentrations were indicative of ground water within the Ledbetter Creek watershed. Following reservoir-stage increase, δ2H and δ18O values shifted from -24.5 to -42.5 per mil and -4.87 to -7.46 per mil, respectively. Cl- concentrations shifted from 5.7 to 1.6 mg/l across the hyporheic-hypolentic boundary. At this time, surface water from the embayment infiltrated into the hyporheic-hypolentic zone to a depth of at least 16 cm below the channel bottom. Reservoir-stage decline in the autumn caused source-water mixing, largely obscuring the hyporheic-hypolentic boundary. However, based on these findings, stable isotopes provide a suitable alternative to conventional tracers for delineation of water masses within the hyporheic-hypolentic zone.

New slip rate estimates for the Mission Creek strand of the San Andreas fault zone

NASA Astrophysics Data System (ADS)

Blisniuk, K.; Scharer, K. M.; Sharp, W. D.; Burgmann, R.; Rymer, M. J.; Williams, P. L.

2013-12-01

The potential for a large-magnitude earthquake (Mw ≥ 6.7) on the southern San Andreas fault zone (SAFZ) is generally considered high (Working Group on California Earthquake Probabilities, 2007). However, the proportion of slip accommodated by each of its three major fault strands (Mission Creek, Banning, and Garnet Hill, from north to south) in the Indio Hills is poorly constrained. Each of these strands cut through San Gorgonio Pass west to the Los Angeles metropolitan region. To better assess the relative importance of these faults and their potential for a major earthquake, we dated offsets at two sites on the Mission Creek fault in the central Indio Hills, an offset channel at Pushawalla Canyon and an offset debris cone at a small unnamed canyon located ~1.5 km farther southeast. Previous work on this strand at Biskra Palms, in the southern Indio Hills, demonstrated a slip rate between 12 and 22 mm/yr, with a preferred rate of 14-17 mm/yr (Behr et al., GSAB, 2010). It is generally assumed that the slip rate on the Mission Creek fault decreases northwestwards from Biskra Palms (e.g. Fumal et al., BSSA, 2002) towards these two sites in the central Indio Hills. However, our initial results from uranium-series dating of pedogenic carbonate and 10Be cosmogenic exposure dating of surface clasts from deposits offset 1.3-1.6 km since ~70 ka and 44-50 m since ~2.5 ka indicate that during the late Pleistocene and Holocene slip on the Mission Creek fault in the central Indio Hills has occurred at a relatively constant and unexpectedly high rate of ~20 mm/yr. Combined with published paleoseismic studies for the Mission Creek fault, which show an average earthquake recurrence interval of 225 years for the past 5 events since 900 AD (Fumal et al., 2002), these data imply an average slip-per-event of ~4.5 m. The last earthquake to rupture this section of the Mission Creek fault occurred over 300 years ago (ca. 1690), which indicates that ca. 5.0 to 7.5 m of strain may have accumulated since the last surface-rupturing event. While additional work is needed to better understand how slip along the SAFZ is partitioned in the northwestern Indio Hills, the new data underscore the seismic hazard posed by the Mission Creek fault in this region.

Mortalities of eastern and pacific oyster larvae caused by the pathogens Vibrio coralliilyticus and Vibrio tubiashii

USDA-ARS?s Scientific Manuscript database

Vibrio tubiashii is reported to be a bacterial pathogen of larval Eastern oysters (Crassostrea virginica) and Pacific oysters (Crassostrea gigas) and has been associated with major hatchery crashes, causing shortages in seed oysters for commercial shellfish producers. Another bacterium, Vibrio cora...

7 CFR 701.54 - Oysters.

Code of Federal Regulations, 2010 CFR

2010-01-01

... 7 Agriculture 7 2010-01-01 2010-01-01 false Oysters. 701.54 Section 701.54 Agriculture Regulations... ADMINISTERED UNDER THIS PART § 701.54 Oysters. (a) Notwithstanding § 701.5(b), but otherwise subject to the... be made available under this section for the eligible cost of refurbishing public or private oyster...

40 CFR 408.250 - Applicability; description of the Pacific Coast hand-shucked oyster processing subcategory.

Code of Federal Regulations, 2010 CFR

2010-07-01

... Pacific Coast hand-shucked oyster processing subcategory. 408.250 Section 408.250 Protection of... SEAFOOD PROCESSING POINT SOURCE CATEGORY Pacific Coast Hand-Shucked Oyster Processing Subcategory § 408.250 Applicability; description of the Pacific Coast hand-shucked oyster processing subcategory. The...

40 CFR 408.270 - Applicability; description of the steamed and canned oyster processing subcategory.

Code of Federal Regulations, 2010 CFR

2010-07-01

... steamed and canned oyster processing subcategory. 408.270 Section 408.270 Protection of Environment... PROCESSING POINT SOURCE CATEGORY Steamed and Canned Oyster Processing Subcategory § 408.270 Applicability; description of the steamed and canned oyster processing subcategory. The provisions of this subpart are...

PARASITIC AND SYMBIOTIC FAUNA INHABITING OYSTERS (CRASSOSTREA VIRGINICA) SAMPLED FROM THE CALOOSAHATCHEE ESTUARY, FL

EPA Science Inventory

Oysters, Crassostrea virginica, inhabiting 5 sites in the Caloosahatchee River estuary were studied over a 13 month period to determine the suitability of oyster habitat in relation to their health and condition. Histological examination of 650 oysters (10 animals per station per...

Study on elemental fingerprint of traditional marine Chinese medicine oysters from Jiaozhou Bay, China

NASA Astrophysics Data System (ADS)

Zheng, Yongjun; Zheng, Kang; Li, Yantuan

2012-09-01

In order to investigate the relationship between the trace elements and the characteristics of the oysters, we analyzed the trace elements present in the germplasm of oysters from different producing areas in the Jiaozhou Bay. The element fingerprints were established to reflect the elemental characteristics of the oysters. Concentration patterns of the elements were deciphered by principle component analysis (PCA) and hierarchical cluster analysis (HCA). The six regions were discriminated with accuracy using HCA and PCA based on the concentration of 16 trace elements. The elements were viewed as characteristic elements of the oysters and the fingerprints of these elements could be used to distinguish the quality of the oysters.

Processes of zinc attenuation by biogenic manganese oxides forming in the hyporheic zone of Pinal Creek, Arizona

USGS Publications Warehouse

Fuller, Christopher C.; Bargar, John R.

2014-01-01

The distribution and speciation of Zn sorbed to biogenic Mn oxides forming in the hyporheic zone of Pinal Creek, AZ, was investigated using extended X-ray absorption fine structure (EXAFS) and microfocused synchrotron X-ray fluorescence (μSXRF) mapping, and chemical extraction. μSXRF and chemical extractions show that contaminant Zn co-varied with Mn in streambed sediment grain coatings. Bulk and microfocused EXAFS spectra of Zn in the biogenic Mn oxide coating are indicative of Zn forming triple-corner-sharing inner-sphere complexes over octahedral vacancies in the Mn oxide sheet structure. Zn desorbed in response to the decrease in pH in batch experiments and resulted in near-equal dissolved Zn at each pH over a 10-fold range in the solid/solution ratio. The geometry of sorbed Zn was unchanged after 50% desorption at pH 5, indicating that desorption is not controlled by dissolution of secondary Zn phases. In summary, these findings support the idea that Zn attenuation in Pinal Creek is largely controlled by sorption to microbial Mn oxides forming in the streambed during hyporheic exchange. Sorption to biogenic Mn oxides is likely an important process of Zn attenuation in circum-neutral pH reaches of many acid-mine drainage contaminated streams when dissolved Mn is present.

Influence of eutrophication on metal bioaccumulation and oral bioavailability in oysters, Crassostrea angulata.

PubMed

Li, Shun-Xing; Chen, Li-Hui; Zheng, Feng-Ying; Huang, Xu-Guang

2014-07-23

Oysters (Crassostrea angulata) are often exposed to eutrophication. However, how these exposures influence metal bioaccumulation and oral bioavailability (OBA) in oysters is unknown. After a four month field experimental cultivation, bioaccumulation factors (BAF) of metals (Fe, Cu, As, Cd, and Pb) from seawater to oysters and metal oral bioavailability in oysters by bionic gastrointestinal tract were determined. A positive effect of macronutrient (nitrate N and total P) concentration in seawater on BAF of Cd in oysters was observed, but such an effect was not significant for Fe, Cu, Pb, and As. Only OBA of As was significantly positively correlated to N and P contents. For Fe, OBA was negatively correlated with N. The regular variation of the OBA of Fe and As may be due to the effect of eutrophication on the synthesis of metal granules and heat-stable protein in oysters, respectively.

Nutrient Enrichment in Estuaries from Discharge of Shallow Ground Water, Mt. Desert Island, Maine

USGS Publications Warehouse

Culbertson, Charles W.; Huntington, Thomas G.; Caldwell, James M.

2007-01-01

Nutrient enrichment from atmospheric deposition, agricultural activities, wildlife, and domestic sources is a concern at Acadia National Park because of the potential problem of water-quality degradation and eutrophication in its estuaries. Water-quality degradation has been observed at the Park?s Bass Harbor Marsh estuary but not in Northeast Creek estuary. Previous studies at Acadia National Park have estimated nutrient inputs to estuaries from atmospheric deposition and surface-water runoff, but the importance of shallow ground water that may contain nutrients derived from domestic or other sources is unknown. Northeast Creek and Bass Harbor Marsh estuaries were studied to (1) identify shallow ground-water seeps, (2) assess the chemistry of the water discharged from selected seeps, and (3) assess the chemistry of ground water in shallow ground-water hyporheic zones. The hyporheic zone is defined here as the region beneath and lateral to a stream bed, where there is mixing of shallow ground water and surface water. This study also provides baseline chemical data for ground water in selected bedrock monitoring wells and domestic wells on Mt. Desert Island. Water samples were analyzed for concentrations of nutrients, wastewater compounds, dissolved organic carbon, pH, dissolved oxygen, temperature and specific conductance. Samples from bedrock monitoring wells also were analyzed for alkalinity, major cations and anions, and trace metals. Shallow ground-water seeps to Northeast Creek and Bass Harbor Marsh estuaries at Acadia National Park were identified and georeferenced using aerial infrared digital imagery. Monitoring included the deployment of continuously recording temperature and specific conductance sensors in the seep discharge zone to access marine or freshwater signatures related to tidal flooding, gradient-driven shallow ground-water flow, or shallow subsurface flow related to precipitation events. Many potential shallow ground-water discharge zones were identified from aerial thermal imagery during flights in May and December 2003 in both estuaries. The occurrence of ground-water seeps was confirmed using continuous and discrete measurements of temperature and specific conductance in selected seeps and in the adjacent estuaries that showed salinity anomalies reflecting the input of freshwater in these complex tidal systems. Analysis of water samples from shallow ground water in the hyporheic zone and from ground-water seeps indicated the presence of elevated concentrations of dissolved nitrogen, compared to concentrations in the adjacent estuaries and surface-water tributaries draining into the estuaries. These findings indicate that shallow ground water is a source of dissolved nitrogen to the estuaries. Orthophosphate levels were low in ground water in the hyporheic zone in Bass Harbor Marsh, but somewhat higher in one hyporheic-zone well in Northeast Creek compared with the concentrations in both estuaries that were at or below detection limits. Household wastewater-related compounds were not detected in ground water in the hyporheic zone. Analysis of water samples from domestic and bedrock monitoring wells developed in fractured bedrock indicated that concentrations of dissolved nitrogen, phosphorus, and household wastewater-related compounds were typically at or below detection, suggesting that the aquifers sampled had not been contaminated from septic sources.

76 FR 59423 - Drakes Bay Oyster Company Special-Use Permit, Draft Environmental Impact Statement, Point Reyes...

Federal Register 2010, 2011, 2012, 2013, 2014

2011-09-26

... Bay Oyster Company Special-Use Permit, Draft Environmental Impact Statement, Point Reyes National... Drakes Bay Oyster Company Special-use permit in Drakes Estero, Point Reyes National Seashore, California... site, at http://parkplanning.nps.gov/pore (click on the Drakes Bay Oyster Company Special-use permit...

40 CFR 408.260 - Applicability; description of the Atlantic and Gulf Coast hand-shucked oyster processing...

Code of Federal Regulations, 2010 CFR

2010-07-01

... Atlantic and Gulf Coast hand-shucked oyster processing subcategory. 408.260 Section 408.260 Protection of... SEAFOOD PROCESSING POINT SOURCE CATEGORY Atlantic and Gulf Coast Hand-Shucked Oyster Processing Subcategory § 408.260 Applicability; description of the Atlantic and Gulf Coast hand-shucked oyster processing...

Histological Alterations in Pacific Oysters Crassostrea gigas that Survived a Summer Mortality Event in Baja California, Mexico.

PubMed

Cáceres-Martínez, Jorge; Vásquez-Yeomans, Rebeca; Danigo, Philippe; Reyes-Roel, Carlos

2018-03-01

A mortality episode (>90%) of triploid and diploid Pacific oysters Crassostrea gigas cultured in Baja California Sur occurred during summer 2012, coinciding with a thermal anomaly, an algal bloom, and low oxygen values. To help explain the cause of the mortalities, histological analyses and molecular tests for specific pathogens (ostreid herpesvirus 1 [OsHV-1] and Perkinsus marinus) were performed on oysters surviving at the end of the episode. Triploid oysters showed a high percentage of males (43%) and hermaphrodites (30%); 93% of these oysters were in the gonadic reabsorption stage, and in some cases, hemocytes completely filled the lumen of the gonadic follicles. Oysters presented large areas with severe hemocyte infiltration that extended toward the digestive gland. Diploid oysters showed similar gonad alterations. None of samples showed histological or molecular evidence of OsHV-1 or P. marinus. Histological alterations can be related to physiological disorders caused by the mechanism driving summer mortality. This is the first case history of a summer mortality episode among Pacific oysters in Mexico. © 2017 American Fisheries Society.

Increases in the amounts of Vibrio spp. in oysters upon addition of exogenous bacteria.

PubMed

Froelich, Brett; Oliver, James

2013-09-01

The bacterial pathogen Vibrio vulnificus is found naturally in brackish coastal waters but can be greatly concentrated by filter-feeding organisms such as shellfish. Numerous experiments in which exogenous V. vulnificus cells are added to oysters in an attempt to measure uptake and depuration have been performed. In nearly all cases, results have shown that laboratory-grown bacteria are rapidly taken up by the oysters but ultimately eliminated, while naturally present Vibrio populations in oysters are resistant to depuration. In this study, oysters harvested during winter months, with low culturable Vibrio concentrations, were incubated in aquaria supplemented with strains of V. vulnificus that were either genotypically or phenotypically distinct from the background bacteria. These exogenous cells were eliminated from the oysters, as previously seen, but other vibrios already inhabiting the oysters responded to the V. vulnificus inoculum by rapidly increasing in number and maintaining a large stable population. The presence of such an oyster-adapted Vibrio population would be expected to prevent colonization by exogenous V. vulnificus cells, thus explaining the rapid depuration of these added bacteria.

Evaluation of the proximate quality of the combination of Tuna (Thunnus albacares) and white oyster mushroom (Pleurotus ostreatus) nuggets

NASA Astrophysics Data System (ADS)

Yufidasari, H. S.; Prihanto, A. A.; Nurdiani, R.; Jaziri, A. A.

2018-04-01

Nugget is a processed meat product which has great market demand but need variations to increase its nutritional content. Tuna is rich in omega-3 protein, vitamins, and minerals. White oyster mushrooms have high nutritional content which are about 23-33% protein, 36-68 % carbohydrates and 12-22 % amino acids. The purpose of this research is to evaluate the chemical quality of Tuna nugget (Thunnus albacores) with combination of white oyster mushroom (Pleurotus ostreatus). Complete Randomized Design (RAL) with parameters of Tuna and white oyster mushroom formulation, TJ1 (70 % Tuna: 30 % white oyster mushroom), TJ2 (50 % Tuna: 50 % white oyster mushroom), TJ3 (30 % Tuna: 70 % white oyster mushroom), and Control or K Treatment (100 % Tuna) is used. Results of Tuna nuggets with white oyster mushroom combination showed the highest value of water content in TJ3 50.14 %, protein K 19.6 %, fat TJ3 22.98 %, ash K 3.99 % and 2.47 % crude fiber. From these results, there is a need for further research on fat, ash and coarse fiber content that is used in the manufacture of fish nuggets combined with oyster mushrooms because it failed to meet Indonesian National Standard (SNI).

Seasonal dynamics and diversity of bacteria in retail oyster tissues.

PubMed

Wang, Dapeng; Zhang, Qian; Cui, Yan; Shi, Xianming

2014-03-03

Oysters are one of the important vehicles for the transfer of foodborne pathogens. It was reported that bacteria could be bio-accumulated mainly in the gills and digestive glands. In artificially treated oysters, bacterial communities have been investigated by culture-independent methods after harvest. However, little information is available on the seasonal dynamics of bacterial accumulation in retail oyster tissues. In this study, retail oysters were collected from local market in different seasons. The seasonal dynamics and diversity of bacteria in oyster tissues, including the gills, digestive glands and residual tissues, were analyzed by denaturing gradient gel electrophoresis (DGGE). It was interesting that the highest bacterial diversity appeared in the Fall season, not in summer. Our results indicated that Proteobacteria was the predominant member (23/46) in oyster tissues. Our results also suggested that bacterial diversity in gills was higher than that in digestive glands and other tissues. In addition, not all the bacteria collected from surrounding water by gills were transferred to digestive glands. On the other hand, few bacteria were found in oyster tissues except in the gills. Therefore, the gills could be the best candidate target tissue for monitoring of pathogenic bacteria either to human or to oyster. Copyright © 2013 Elsevier B.V. All rights reserved.

Perception of oyster-based products by French consumers. The effect of processing and role of social representations.

PubMed

Debucquet, Gervaise; Cornet, Josiane; Adam, Isabelle; Cardinal, Mireille

2012-12-01

The search for new markets in the seafood sector, associated with the question of the continuity of raw oyster consumption over generations can be an opportunity for processors to extend their ranges with oyster-based products. The twofold aim of this study was to evaluate the impact of processing and social representation on perception of oyster-based products by French consumers and to identify the best means of development in order to avoid possible failure in the market. Five products with different degrees of processing (cooked oysters in a half-shell, hot preparation for toast, potted oyster, oyster butter and oyster-based soup) were presented within focus groups and consumer tests, at home and in canteens with the staff of several companies in order to reach consumers with different ages and professional activities. The results showed that social representation had a strong impact and that behaviours were contrasted according to the initial profile of the consumer (traditional raw oyster consumers or non-consumers) and their age distribution (younger and older people). The degree of processing has to be adapted to each segment. It is suggested to develop early exposure to influence the food choices and preferences of the youngest consumers on a long-term basis. Copyright © 2012 Elsevier Ltd. All rights reserved.

Sensitivity to ocean acidification differs between populations of the Sydney rock oyster: Role of filtration and ion-regulatory capacities.

PubMed

Stapp, Laura S; Parker, Laura M; O'Connor, Wayne A; Bock, Christian; Ross, Pauline M; Pörtner, Hans O; Lannig, G

2018-04-01

Understanding mechanisms of intraspecific variation in resilience to environmental drivers is key to predict species' adaptive potential. Recent studies show a higher CO 2 resilience of Sydney rock oysters selectively bred for increased growth and disease resistance ('selected oysters') compared to the wild population. We tested whether the higher resilience of selected oysters correlates with an increased ability to compensate for CO 2 -induced acid-base disturbances. After 7 weeks of exposure to elevated seawater PCO 2 (1100 μatm), wild oysters had a lower extracellular pH (pH e = 7.54 ± 0.02 (control) vs. 7.40 ± 0.03 (elevated PCO 2 )) and increased hemolymph PCO 2 whereas extracellular acid-base status of selected oysters remained unaffected. However, differing pH e values between oyster types were not linked to altered metabolic costs of major ion regulators (Na + /K + -ATPase, H + -ATPase and Na + /H + -exchanger) in gill and mantle tissues. Our findings suggest that selected oysters possess an increased systemic capacity to eliminate metabolic CO 2 , possibly through higher and energetically more efficient filtration rates and associated gas exchange. Thus, effective filtration and CO 2 resilience might be positively correlated traits in oysters. Copyright © 2017 Elsevier Ltd. All rights reserved.

Bioaccumulation and metabolomics responses in oysters Crassostrea hongkongensis impacted by different levels of metal pollution.

PubMed

Cao, Chen; Wang, Wen-Xiong

2016-09-01

Jiulong River Estuary, located in southern China, was heavily contaminated by metal pollution. In this study, the estuarine oysters Crassostrea hongkongensis were transplanted to two sites with similar hydrological conditions but different levels of metal pollution in Jiulong River Estuary over a six-month period. We characterized the time-series change of metal bioaccumulation and final metabolomics responses of oysters. Following transplantation, all metals (Cd, Cu, Cr, Ni, Pb, and Zn) in the oyster digestive glands had elevated concentrations over time. By the end of six-month exposure, Cu, Zn and Cd were the main metals significantly differentiating the two sites. Using (1)H NMR metabolite approach, we further demonstrated the disturbance in osmotic regulation, energy metabolism, and glycerophospholipid metabolism induced by metal contaminations. Six months later, the oysters transplanted in the two sites showed a similar metabolite variation pattern when compared with the initial oysters regardless of different metal levels in the tissues. Interestingly, by comparing the oysters from two sites, the more severely polluted oysters accumulated significantly higher amounts of osmolytes (betaine and homarine) and lower energy storage compounds (glycogen) than the less polluted oysters; these changes could be the potential biomarkers for different levels of metal pollution. Our study demonstrated the complexity of biological effects under field conditions, and NMR metabolomics provides an important approach to detect sensitive variation of oyster inner status. Copyright © 2016 Elsevier Ltd. All rights reserved.

APPLICATION OF RADIOISOTOPE-LABELED BACTERIA IN FOOD SANITATION STUDIES. IV. ON THE BACTERIAL CONTAMINATION AND DECONTAMINATION OF LIVING OYSTER (in Japanese)

DOE Office of Scientific and Technical Information (OSTI.GOV)

Bito, T.; Takase, A.

Decontamination of the living oyster was studied by Y/sup 90/or Y/sup 91/ -labeled coliform bacteria. At low temperature, precultural temperature affected the contamination of the oyster but the uptake of bacteria by the oyster was distinctly observed below 5 deg C. In a study on elapsing change of contamination, it was determined that the whole bacterial load of the oyster depended mainly on the gill, but was not negligible on the digestive tract. The contaminating rate of the oyster was successfully measured by automatic recording of the shift of radioactivity in the contaminated cultural water with a dip-type G-M countermore » ratemeter and chart recorder, because the bacterial concentration of the closed cultural water decrease according to the bacterial uptake of the oyster. On decontamination of the oyster, it was observed that the most effective temperature existed in the region of 15 to 25 deg C, and at the upper or lower of this region the decontaminating efficiency decreased. As for the exchange rate of the culture water, the decontaminating effect on the oyster was proportional to an increase of the rate to 7.5 times per hour. However, more was of no effect. An increase in the cultured water volume was harmful for the decontamination of the oyster because of the exchanging efficiency of the water. (P.C.H.)« less

Cadmium Bioaccumulation in European Flat Oysters (Ostrea Edulis) from Middle Adriatic Sea (San Benedetto Del Tronto District, Italy)

PubMed Central

Semeraro, Angela Marisa; Aliventi, Alessandra; Di Trani, Vittoria; Capocasa, Piero

2014-01-01

Bivalve molluscs represent an important source of cadmium exposure in humans, in particular oysters, because of their high filter feeding capability and high concentration of metal-binding metallothionein in tissues. In this study the authors investigated the difference in cadmium bioaccumulation in European flat oysters harvested from production areas in the district of San Benedetto del Tronto (Ascoli Piceno province, Italy), as a function of their origin (farming or natural beds) and the time of gathering. The beds lie 3 nm off-shore at a depth of 20-40 m and are collected by dredging. In the farms, baskets are suspended in the water column 2.5-3 nm offshore at a depth of 4 m. The authors analysed the results of cadmium monitoring plan carried out in oyster natural beds for a total of 15 samples collected from 2004 to 2012 and in two oyster farms for a total of 11 samples from 2009 to 2012. Although the few data did not allow to find a significant statistical association, they suggested two findings: i) cadmium concentration in oysters from natural beds seemed to be lower than in farmed oysters; and ii) in farmed oysters cadmium concentration even exceeded allowed maximum level for human consumption, in particular in autumn. The vertical stratification in the water column of phytoplankton and a cadmium dilution at oyster gonadal maturation might cause changes in oyster cadmium accumulation. PMID:27800338

A Restoration Suitability Index Model for the Eastern Oyster (Crassostrea virginica) in the Mission-Aransas Estuary, TX, USA

PubMed Central

Beseres Pollack, Jennifer; Cleveland, Andrew; Palmer, Terence A.; Reisinger, Anthony S.; Montagna, Paul A.

2012-01-01

Oyster reefs are one of the most threatened marine habitats on earth, with habitat loss resulting from water quality degradation, coastal development, destructive fishing practices, overfishing, and storm impacts. For successful and sustainable oyster reef restoration efforts, it is necessary to choose sites that support long-term growth and survival of oysters. Selection of suitable sites is critically important as it can greatly influence mortality factors and may largely determine the ultimate success of the restoration project. The application of Geographic Information Systems (GIS) provides an effective methodology for identifying suitable sites for oyster reef restoration and removes much of the uncertainty involved in the sometimes trial and error selection process. This approach also provides an objective and quantitative tool for planning future oyster reef restoration efforts. The aim of this study was to develop a restoration suitability index model and reef quality index model to characterize locations based on their potential for successful reef restoration within the Mission-Aransas Estuary, Texas, USA. The restoration suitability index model focuses on salinity, temperature, turbidity, dissolved oxygen, and depth, while the reef quality index model focuses on abundance of live oysters, dead shell, and spat. Size-specific Perkinsus marinus infection levels were mapped to illustrate general disease trends. This application was effective in identifying suitable sites for oyster reef restoration, is flexible in its use, and provides a mechanism for considering alternative approaches. The end product is a practical decision-support tool that can be used by coastal resource managers to improve oyster restoration efforts. As oyster reef restoration activities continue at small and large-scales, site selection criteria are critical for assisting stakeholders and managers and for maximizing long-term sustainability of oyster resources. PMID:22792410

Developing tools for the study of molluscan immunity: The sequencing of the genome of the eastern oyster, Crassostrea virginica.

PubMed

Gómez-Chiarri, Marta; Warren, Wesley C; Guo, Ximing; Proestou, Dina

2015-09-01

The eastern oyster, Crassostrea virginica, provides important ecological and economical services, making it the target of restoration projects and supporting a significant fishery/aquaculture industry with landings valued at more than $100 million in 2012 in the United States of America. Due to the impact of infectious diseases on wild, restored, and cultured populations, the eastern oyster has been the focus of studies on host-pathogen interactions and immunity, as well as the target of selective breeding efforts for disease resistant oyster lines. Despite these efforts, relatively little is known about the genetic basis of resistance to diseases or environmental stress, not only in eastern oyster, but also in other molluscan species of commercial interest worldwide. In order to develop tools and resources to assist in the elucidation of the genomic basis of traits of commercial, biological, and ecological interest in oysters, a team of genome and bioinformatics experts, in collaboration with the oyster research community, is sequencing, assembling, and annotating the first reference genome for the eastern oyster and producing an exhaustive transcriptome from a variety of oyster developmental stages and tissues in response to a diverse set of environmentally-relevant stimuli. These transcriptomes and reference genome for the eastern oyster, added to the already available genome and transcriptomes for the Pacific oyster (Crassostrea gigas) and other bivalve species, will be an essential resource for the discovery of candidate genes and markers associated with traits of commercial, biological, and ecologic importance in bivalve molluscs, including those related to host-pathogen interactions and immunity. Copyright © 2015 Elsevier Ltd. All rights reserved.

Does reef structure affect oyster food resources? A stable isotope assessment.

PubMed

Blomberg, Brittany N; Lebreton, Benoit; Palmer, Terence A; Guillou, Gaël; Beseres Pollack, Jennifer; Montagna, Paul A

2017-06-01

As ecosystem engineers, oysters create and maintain structured habitat and can influence trophodynamics and benthic-pelagic coupling in the surrounding landscape. The physical reef structure and associated biotic parameters can affect the availability of food resources for oysters. Oysters and potential composite food sources - suspended particulate organic matter (SPOM) and surface sediment organic matter (SSOM) - were assessed using a dual stable isotope (δ 13 C, δ 15 N) approach at three reef types (natural, restored, and unconsolidated) seasonally for two years to determine if changes in physical and/or biotic parameters affected the relative availability and/or use of food resources by oysters. SPOM was more depleted in 13 C (-24.2 ± 0.6‰, mean ± SD) than SSOM (-21.2 ± 0.8‰). SPOM composition is likely dominated by autochthonous phytoplankton production, while SSOM includes trapped phytoplankton and benthic microalgae. SSOM was used by oysters in increasing proportions relative to SPOM over time at all reef types. This temporal trend is likely due to increased oyster biomass over time, promoting enhanced microphytobenthos growth through feedback effects related to oyster biodeposits. Structural differences between reef types observed in this study had no effect on food resource availability and use by oysters, indicating strong bentho-pelagic coupling likely due to shallow depths as well as strong and consistent winds. This study provides insights for restoration of oyster reefs as it highlights that food resources used by oysters remain similar among reef types despite changes in abiotic and biotic parameters among habitats and over time. Copyright © 2017 Elsevier Ltd. All rights reserved.

The effect of a novel photodynamic activation method mediated by curcumin on oyster shelf life and quality.

PubMed

Liu, Fang; Li, Zhaojie; Cao, Binbin; Wu, Juan; Wang, Yuming; Xue, Yong; Xu, Jie; Xue, Changhu; Tang, Qing Juan

2016-09-01

In this paper, the effect of photodynamic method mediated by curcumin (PDT) on the shelf life and quality of pacific oysters during storage at 5±1°C were analyzed. In our previous study we investigated the optimal treatment conditions of photodynamic method mediated by curcumin to sterilization were 10uM photosensitizer concentration and 5.4J/cm 2 light energy density. Under these conditions, the effect of a novel photodynamic activation method mediated by curcumin on oyster shelf life and quality was researched. The total bacterial counts, TVB-N content and sensory analysis were used to evaluate the effects on oyster shelf life. The oyster shelf life was prolonged from 8days to 12days after photodynamic treatment and the oysters in the treatment group displayed notable odor retention, produced fewer odor corrupting substances when the control group oysters reached the end of their shelf life (day 8). Texture, free amino acid contents and fatty acid levels were applied to estimate the quality of the treated oysters. The texture had no significant change after treated with PDT. At the end of oyster shelf life, compared PDT group (PDT) with control group (control), total free amino acid contents (control: 234.30mg/100g, PDT: 813.02mg/100g) was higher and free fatty acid levels (control: 0.071mEq/L, PDT: 0.0455mEq/L) displayed lower in PDT group. This indicated that the treated oysters oxidized minimally, decayed slowly, decomposed fewer nutrients and had lower metabolic levels of spoilage microorganisms. PDT has a positive effect on prolonging oyster shelf life and its quality. Copyright © 2016 Elsevier Ltd. All rights reserved.

Microbial quality of oysters sold in Western Trinidad and potential health risk to consumers.

PubMed Central

Rampersad, F. S.; Laloo, S.; La Borde, A.; Maharaj, K.; Sookhai, L.; Teelucksingh, J.; Reid, S.; McDougall, L.; Adesiyun, A. A.

1999-01-01

The prevalence and characteristics of Escherichia coli and Salmonella spp. as well as counts of E. coli in raw oysters, condiments/spices, and raw oyster cocktails sampled from 72 vendors across Western Trinidad were determined. The microbial quality of the water used in the preparation of raw oysters was also investigated. Of 200 samples each of raw oysters, condiments/spices and oyster cocktails tested, 154 (77.0%), 89 (44.5%) and 154 (77.0%) respectively yielded E. coli. The differences were statistically significant (P = < 0.001; chi square = 62.91). The mean E. coli count per g in the ready-to-eat oyster cocktail ranged from 1.5 x 10(3) +/- 2.7 x 10(3) in Couva to 8.7x10(6) +/- 4.9x10(7) in San Fernando. One hundred and forty-six (73.0%) oyster cocktails contaminated with E. coli had counts that exceeded the recommended standard of 16 per g. Of a total of 590 E. coli isolates from various sources tested, 24 (4.1%), 20 (3.4%) and 69 (11.7%) were mucoid, haemolytic and non-sorbitol fermenters respectively. Twelve (2.0%) isolates of E. coli were O157 strains, while 92 (46.0%) of 200 E. coli isolates tested belonged to enteropathogenic serogroups. Ninety (45.0%) and 73 (36.5%) of 200 water samples contained total coliforms and faecal coliforms respectively, with counts that exceeded 2.2 coliforms per 100 ml. Salmonella spp. were isolated from 7 (3.5%), 1 (0.5%) and 2 (1.0%) of 200 samples each, of raw oysters, condiments/spices and oyster cocktails respectively. Oysters pose a health risk to consumers in Trinidad, particularly from colibacillosis and salmonellosis, and the need for increased public awareness of this hazard cannot be over-emphasized. PMID:10579443

Biotransformation and detoxification of inorganic arsenic in Bombay oyster Saccostrea cucullata.

PubMed

Zhang, Wei; Guo, Zhiqiang; Zhou, Yanyan; Liu, Huaxue; Zhang, Li

2015-01-01

Arsenic (As) exists as the toxic inorganic forms in marine water and sediment, while marine oysters usually accumulate high As contents mostly as the less toxic organic forms. It has not yet been clear that how As is biotransformed in marine oysters. This study therefore investigated the biotransformation and detoxification of two inorganic As forms (As(III) and As(V)) in Bombay oyster Saccostrea cucullata after waterborne exposures for 30 days. Seven treatments of dissolved As exposure (clean seawater, 1, 5, 20 mg/L As(III), and 1, 5, 20 mg/L As(V)) were performed. Body As concentration increased significantly after all As exposure treatments except 1mg/L As(V). Total As, As(III), and As(V) concentration were positive correlated with glutathione-S-transferases (GST) activities, suggesting GST might play an important role in the As biotransformation and detoxification process. Organic As species were predominant in control and the low As exposed oysters, whereas a large fraction of As was remained as the inorganic forms in the high As exposed oysters, suggesting As could be biotransformed efficiently in the oysters in clean or light contaminated environment. The results of As speciation demonstrated the As biotransformation in the oysters included As(V) reduction, methylation to monomethylarsonic acid (MMA) and dimethylarsinic acid (DMA), and subsequent conversion to arsenobetaine (AsB). More As was distributed in the subcellular metallothionein-like proteins fraction (MTLP) functioning sequestration and detoxification in the inorganic As exposed oysters, suggesting it was also a strategy for oysters against As stress. In summary, this study elucidated that marine oysters had high ability to accumulate, biotransform, and detoxify inorganic As. Copyright © 2014 Elsevier B.V. All rights reserved.

Effects of electrolyzed oxidizing water treatment on reducing Vibrio parahaemolyticus and Vibrio vulnificus in raw oysters.

PubMed

Ren, Tingting; Su, Yi-Cheng

2006-08-01

Contamination of Vibrio parahaemolyticus and Vibrio vulnificus in oysters is a food safety concern. This study investigated effects of electrolyzed oxidizing (EO) water treatment on reducing V. parahaemolyticus and V. vulnificus in laboratory-contaminated oysters. EO water exhibited strong antibacterial activity against V. parahaemolyticus and V. vulnificus in pure cultures. Populations of V. parahaemolyticus (8.74 x 10(7) CFU/ml) and V. vulnificus (8.69 x 10(7) CFU/ml) decreased quickly in EO water containing 0.5% NaCl to nondetectable levels (> 6.6 log reductions) within 15 s. Freshly harvested Pacific oysters were inoculated with a five-strain cocktail of V. parahaemolyticus or V. vulnificus at levels of 10(4) and 10(6) most probable number (MPN)/g and treated with EO water (chlorine, 30 ppm; pH 2.82; oxidation-reduction potential, 1131 mV) containing 1% NaCl at room temperature. Reductions of V. parahaemolyticus and V. vulnificus in oysters were determined at 0 (before treatment), 2, 4, 6, and 8 h of treatment. Holding oysters inoculated with V. parahaemolyticus or V. vulnificus in the EO water containing 1% NaCl for 4 to 6 h resulted in significant (P < 0.05) reductions of V. parahaemolyticus and V. vulnificus by 1.13 and 1.05 log MPN/g, respectively. Extended exposure (> 12 h) of oysters in EO water containing high levels of chlorine (> 30 ppm) was found to be detrimental to oysters. EO water could be used as a postharvest treatment to reduce Vibrio contamination in oysters. However, treatment should be limited to 4 to 6 h to avoid death of oysters. Further studies are needed to determine effects of EO water treatment on sensory characteristics of oysters.

High Salinity Relaying to Reduce Vibrio parahaemolyticus and Vibrio vulnificus in Chesapeake Bay Oysters (Crassostrea virginica).

PubMed

Parveen, Salina; Jahncke, Michael; Elmahdi, Sara; Crocker, Helen; Bowers, John; White, Chanelle; Gray, Stephanie; Morris, Amanda C; Brohawn, Kathy

2017-02-01

Cases of Vibrio infections in the United States have tripled from 1996 to 2009 and these infections are most often associated with the consumption of seafood, particularly oysters (Crassostrea virginica). Information is needed on how to reduce numbers of Vibrio parahaemolyticus and Vibrio vulnificus in bi-valve molluscan shellfish (for example, oysters). The purpose of this study was to evaluate the effectiveness of high salinity relaying or treatment in recirculating aquaculture systems (RASs) as methods to reduce the abundance of V. parahaemolyticus and V. vulnificus in oysters. For relaying field trials, oysters were collected from approved harvest waters, temperature abused outside under a tarp for 4 h, and then transferred to high (29 to 33 ppt.) and moderate (12 to 19 ppt.) salinities. For RAS treatment trial, oysters were transferred to 32 to 34 ppt. salinity at 15 °C. After 7, 14, 21, and in some instances 28 d, oysters were collected and analyzed for V. parahaemolyticus and V. vulnificus levels using multiplex real-time PCR. Initial levels of V. parahaemolyticus and V. vulnificus ranged from 3.70 to 5.64 log 10 MPN/g, and were reduced by 2 to 5 logs after 21 to 28 d in high salinity water (29 to 34 ppt.). Oyster mortalities averaged 4% or less, and did not exceed 7%. Relaying of oysters to high salinity field sites or transfer to high salinity RAS tanks was more effective in reducing V. vulnificus compared with V. parahaemolyticus. These results suggest that high salinity relaying of oysters is more effective in reducing V. vulnificus than V. parahaemolyticus in the oyster species used in this study. © 2016 Institute of Food Technologists®.

The biofilteration ability of oysters (Crassostrea gigas) to reduce Aeromonas salmonicida in salmon culture.

PubMed

Ma, Xiaona; Li, Xian; Sun, Guoxiang; Sharawy, Zaki Zaki; Qiu, Tianlong; Du, Yishuai; Liu, Ying

2017-07-01

Pathogen contamination in the environment is inevitable with the rapid development of intensive aquaculture. Therefore, alternative ecofriendly biological strategies to control pathogenic bacteria are required. However, our aim was to investigate the ability of oysters (Crassostrea gigas) to filter the important opportunistic pathogen, Aeromonas salmonicida (strain C4), using a green fluorescent protein tag (GFP) in the Atlantic salmon (Salmo salar) farming wastewater. Hence, A. salmonicida removal efficiency and ingestion rate were detected in two different oyster stages (larvae and adults). To evaluate the practical performance of oysters as A. salmonicida biofilter, adult oysters were applied to an integrated constructed wetlands system (ICWS) and their long-term C4-GFP removal efficiency was recorded for 60 days. Overall, our results clearly indicated that oysters had substantial A. salmonicida removal ability via their ingestion process when observed under a fluorescent microscope. Approximately 88-95% of C4-GFP was removed by oyster larvae at an ingestion rate of 6.4 × 10 3 -6.2 × 10 5  CFU/h·ind, while 79-92% of C4-GFP was removed by adult oysters at an ingestion rate of 2.1 × 10 4 -3.1 × 10 6  CFU/h·ind. Furthermore, 57.9 ± 17.2% of C4-GFP removal efficiency was achieved when oysters were applied to ICWS. We, therefore, concluded that using oysters as a biofilter represents an effective alternative for removing A. salmonicida from aquaculture wastewater. However, the fate of oysters after ingesting the pathogenic bacteria, acting as a potential reservoir or vector for pathogens, is still debatable. This research provides the basis for the application of oysters as a biofilter to remove pathogens from aquaculture wastewater in industrialized production.

Mapping Oyster Reef Habitats in Mobile Bay

NASA Technical Reports Server (NTRS)

Bolte, Danielle

2011-01-01

Oyster reefs around the world are declining rapidly, and although they haven t received as much attention as coral reefs, they are just as important to their local ecosystems and economies. Oyster reefs provide habitats for many species of fish, invertebrates, and crustaceans, as well as the next generations of oysters. Oysters are also harvested from many of these reefs and are an important segment of many local economies, including that of Mobile Bay, where oysters rank in the top five commercial marine species both by landed weight and by dollar value. Although the remaining Mobile Bay oyster reefs are some of the least degraded in the world, projected climate change could have dramatic effects on the health of these important ecosystems. The viability of oyster reefs depends on water depth and temperature, appropriate pH and salinity levels, and the amount of dissolved oxygen in the water. Projected increases in sea level, changes in precipitation and runoff patterns, and changes in pH resulting from increases in the amount of carbon dioxide dissolved in the oceans could all affect the viability of oyster reefs in the future. Human activities such as dredging and unsustainable harvesting practices are also adversely impacting the oyster reefs. Fortunately, several projects are already under way to help rebuild or support existing or previously existing oyster reefs. The success of these projects will depend on the local effects of climate change on the current and potential habitats and man s ability to recognize and halt unsustainable harvesting practices. As the extent and health of the reefs changes, it will have impacts on the Mobile Bay ecosystem and economy, changing the resources available to the people who live there and to the rest of the country, since Mobile Bay is an important national source of seafood. This project identified potential climate change impacts on the oyster reefs of Mobile Bay, including the possible addition of newly viable habitats in the southeastern regions of the Bay.

Effects of Dry Storage and Resubmersion of Oysters on Total Vibrio vulnificus and Total and Pathogenic (tdh+/trh+) Vibrio parahaemolyticus Levels.

PubMed

Kinsey, Thomas P; Lydon, Keri A; Bowers, John C; Jones, Jessica L

2015-08-01

Vibrio vulnificus (Vv) and Vibrio parahaemolyticus (Vp) are the two leading causes of bacterial illnesses associated with raw shellfish consumption. Levels of these pathogens in oysters can increase during routine antifouling aquaculture practices involving dry storage in ambient air conditions. After storage, common practice is to resubmerge these stored oysters to reduce elevated Vv and Vp levels, but evidence proving the effectiveness of this practice is lacking. This study examined the changes in Vv and in total and pathogenic (thermostable direct hemolysin gene and the tdh-related hemolysin gene, tdh+ and trh+) Vp levels in oysters after 5 or 24 h of dry storage (28 to 32°C), followed by resubmersion (27 to 32°C) for 14 days. For each trial, replicate oyster samples were collected at initial harvest, after dry storage, after 7 days, and after 14 days of resubmersion. Oysters not subjected to dry storage were collected and analyzed to determine natural undisturbed vibrio levels (background control). Vibrio levels were measured using a most-probable-number enrichment followed by real-time PCR. After storage, vibrio levels (excluding tdh+ and trh+ Vp during 5-h storage) increased significantly (P < 0.001) from initial levels. After 7 days of resubmersion, Vv and total Vp levels (excluding total Vp in oysters stored for 5 h) were not significantly different (P < 0.1) from levels in background oysters. Vv and total and pathogenic Vp levels were not significantly different (P > 0.1) from levels in background oysters after 14 days of resubmersion, regardless of dry storage time. These data demonstrate that oyster resubmersion after dry storage at elevated ambient temperatures allows vibrio levels to return to those of background control samples. These results can be used to help minimize the risk of Vv and Vp illnesses and to inform the oyster industry on the effectiveness of routine storing and resubmerging of aquaculture oysters.

Organic Stable Isotopes in Ancient Oyster Shell Trace Pre-colonial Nitrogen Sources

NASA Astrophysics Data System (ADS)

Darrow, E. S.; Carmichael, R. H.; Andrus, C. F. T.; Jackson, H. E.

2016-02-01

Oysters (Crassostrea virginica) were an important food resource for native peoples of the northern Gulf of Mexico, who harvested oysters and deposited waste shell and other artifacts in middens. Shell δ15N is a proxy for oyster tissue δ15N that reflects nitrogen (N) in food sources of bivalves. We tested the use of shell δ15N as a paleo proxy of ancient N sources, which to our knowledge has not been previously done for archeological bivalve specimens. To determine δ15N of the very low-N and high-carbonate ancient specimens, we tested established and modified acidification techniques developed for modern clams and oysters to decalcify organic shell matrix and extract sufficient N for analyses. Centrifugation following acidification better concentrated N from ancient shells for stable isotope analysis. Careful screening was required to detect effects of diagenesis, incomplete acidification, and sample contamination. Modern oyster shells did not require acidification and bulk shell material was directly analyzed for δ15N using an EA-IRMS coupled to a CO2 trap. δ15N values in ancient oyster shells did not differ from modern oyster shells from the same sites, but %N and % organic carbon (C) were lower in ancient than in modern shells. Organic δ13C in ancient shells had a significant negative relationship with shell age, possibly due to an effect of sea level rise increasing marine suspended particulate matter (SPM) sources to oysters. In modern oysters, δ15N had a significant relationship with soft tissue δ15N, and predicted by SPM δ15N, water column nitrate, and water column dissolved organic nitrogen (DON) concentrations, demonstrating the effectiveness of oyster shell δ15N to identify N sources to bivalves such as oysters. Our study has demonstrated the usefulness of δ15N from midden oyster shells as a proxy for N sources in an estuary that has undergone relatively light impacts from human land-use change through the past 2000 years.

Preliminary study of transplanting as a process for reducing levels of Vibrio vulnificus and Vibrio parahaemolyticus in shellstock oysters.

PubMed

Walton, William C; Nelson, Chris; Hochman, Mona; Schwarz, John

2013-01-01

Increasingly strict standards for harvest of oysters for the raw, half-shell market (designated as "white tag") should increase the proportion of oysters not meeting these standards (designated as "green tag"). Transplanting of green tag oysters into highsalinity waters (>20 practical salinity units) was explored as a means of returning Vibrio vulnificus and Vibrio parahaemolyticus levels to levels present on initial harvest. In summer 2011, oysters originally harvested in Louisiana were transplanted on two separate occasions (n = 2) to two sites in Mississippi Sound, AL: Sandy Bay and Dauphin Island. Oysters were tested for V. vulnificus and V. parahaemolyticus densities (by using the U.S. Food and Drug Administration enrichment method) after 2, 7, and 14 days deployed, with baseline samples taken (i) at the time of original harvest and iced, (ii) from oysters refrigerated within 1 h of harvest at <45°F ([7.2°C] white tag) and, (iii) from oysters not refrigerated during the harvest trip (green tag) but refrigerated after an 8-h trip. White and green tag oysters were sampled ∼24 h on arrival in Bon Secour, AL, put on ice, and shipped for analysis. Among baseline samples, there were no significant differences in V. vulnificus and V. parahaemolyticus densities, although the densities in the green tag oysters tended to be highest. After transplanting, V. vulnificus densities were significantly highest on day 2, with no significant differences among any of the other days within a site. On day 2, Sandy Bay had significantly greater densities of V. vulnificus than the Dauphin Island site, but no other days differed from time zero. For Vibrio parahaemolyticus, densities were greatest on day 2 and lowest at time zero, but this did not differ significantly from abundance on day 14. Average survival was 83.4% (± 3.13 SD), with no differences between sites. These preliminary results indicate that high-salinity transplanting could be an effective method of converting green tag oysters to oysters suitable for "reharvest" as white tag oysters.

Effects of pre- or post-processing storage conditions on high-hydrostatic pressure inactivation of Vibrio parahaemolyticus and V. vulnificus in oysters.

PubMed

Ye, Mu; Huang, Yaoxin; Gurtler, Joshua B; Niemira, Brendan A; Sites, Joseph E; Chen, Haiqiang

2013-05-15

The effects of storage conditions on subsequent high-hydrostatic pressure (HHP) inactivation of Vibrio parahaemolyticus and Vibrio vulnificus in oysters were investigated. Live oysters were inoculated with V. parahaemolyticus or V. vulnificus to ca. 7-8 log MPN/g by feeding and stored at varying conditions (i.e., 21 or 35 °C for 5h, 4 or 10 °C for 1 and 2 days and -18 °C for 2 weeks). Oyster meats were then treated at 225-300 MPa for 2 min at 4, 21 or 35 °C. HHP at 300 MPa for 2 min achieved a >5-log MPN/g reduction of V. parahaemolyticus, completely inactivating V. vulnificus (negative by enrichment) in oysters. Treatment temperatures of 4, 21 and 35 °C did not significantly affect pressure inactivation of V. parahaemolyticus or V. vulnificus (P>0.05). Cold storage at -18, 4 and 10 °C, prior to HHP, decreased V. parahaemolyticus or V. vulnificus populations by 1.5-3.0 log MPN/g, but did not increase their sensitivity to subsequent HHP treatments. The effects of cold storage after HHP on inactivation of V. parahaemolyticus in oysters were also determined. Oysters were inoculated with V. parahaemolyticus and stored at 21 °C for 5h or 4 °C for 1 day. Oyster meats were then treated at 250-300 MPa for 2 min at 21 or 35 °C and stored for 15 days in ice or in a freezer. V. parahaemolyticus populations in HHP-treated oysters gradually decreased during post-HHP ice or frozen storage. A validation study using whole-shell oysters was conducted to determine whether the presence of oyster shells influenced HHP inactivation of V. parahaemolyticus. No appreciable differences in inactivation between shucked oyster meat and whole-shell oysters were observed. HPP at 300 MPa for 2 min at 21 °C, followed by 5-day ice storage or 7-day frozen storage, and HPP at 250 MPa for 2 min at 21 °C, followed by 10-day ice or 7-day frozen storage, completely inactivated V. parahaemolyticus in whole-shell oysters (>7 log reductions). The combination of HHP at a relatively low pressure (e.g., 250 MPa) followed by short-term frozen storage (7 days) could potentially be applied by the shellfish industry as a post-harvest process to eliminate V. parahaemolyticus in oysters. Copyright © 2013 Elsevier B.V. All rights reserved.

Non-native plant invasions in managed and protected ponderosa pine/douglas-fir forests of the Colorado Front Range

USGS Publications Warehouse

Fornwalt, P.J.; Kaufmann, M.R.; Huckaby, L.S.; Stoker, J.M.; Stohlgren, T.J.

2003-01-01

We examined patterns of non-native plant diversity in protected and managed ponderosa pine/Douglas-fir forests of the Colorado Front Range. Cheesman Lake, a protected landscape, and Turkey Creek, a managed landscape, appear to have had similar natural disturbance histories prior to European settlement and fire protection during the last century. However, Turkey Creek has experienced logging, grazing, prescribed burning, and recreation since the late 1800s, while Cheesman Lake has not.Using the modified-Whittaker plot design to sample understory species richness and cover, we collected data for 30 0.1 ha plots in each landscape. Topographic position greatly influenced results, while management history did not. At both Cheesman Lake and Turkey Creek, low/riparian plots had highest native and non-native species richness and cover; upland plots (especially east/west-facing, south-facing and flat, high plots) had the lowest. However, there were no significant differences between Cheesman Lake and Turkey Creek for native species richness, native species cover, non-native species richness, or non-native species cover for any topographic category. In general, non-native species richness and cover were highly positively correlated with native species richness and/or cover (among other variables). In total, 16 non-native species were recorded at Cheesman Lake and Turkey Creek; none of the 16 non-native species were more common at one site than another.These findings suggest that: (1) areas that are high in native species diversity also contain more non-native species; (2) both protected and managed areas can be invaded by non-native plant species, and at similar intensities; and (3) logging, grazing, and other similar disturbances may have less of an impact on non-native species establishment and growth than topographic position (i.e., in lowland and riparian zones versus upland zones).

Non-native plant invasions in managed and protected ponderosa pine/Douglas-fir forests of the Colorado Front Range

USGS Publications Warehouse

Fornwalt, P.J.; Kaufmann, M.R.; Huckaby, L.S.; Stoker, J.M.; Stohlgren, T.J.

2003-01-01

We examined patterns of non-native plant diversity in protected and managed ponderosa pine/Douglas-fir forests of the Colorado Front Range. Cheesman Lake, a protected landscape, and Turkey Creek, a managed landscape, appear to have had similar natural disturbance histories prior to European settlement and fire protection during the last century. However, Turkey Creek has experienced logging, grazing, prescribed burning, and recreation since the late 1800s, while Cheesman Lake has not. Using the modified-Whittaker plot design to sample understory species richness and cover, we collected data for 30 0.1 ha plots in each landscape. Topographic position greatly influenced results, while management history did not. At both Cheesman Lake and Turkey Creek, low/riparian plots had highest native and non-native species richness and cover; upland plots (especially east/west-facing, south-facing and flat, high plots) had the lowest. However, there were no significant differences between Cheesman Lake and Turkey Creek for native species richness, native species cover, non-native species richness, or non-native species cover for any topographic category. In general, non-native species richness and cover were highly positively correlated with native species richness and/or cover (among other variables). In total, 16 non-native species were recorded at Cheesman Lake and Turkey Creek; none of the 16 non-native species were more common at one site than another. These findings suggest that: (1) areas that are high in native species diversity also contain more non-native species; (2) both protected and managed areas can be invaded by non-native plant species, and at similar intensities; and (3) logging, grazing, and other similar disturbances may have less of an impact on non-native species establishment and growth than topographic position (i.e., in lowland and riparian zones versus upland zones).

Physical Volcanology and Geochemistry of the Brown's Creek Rhyolite Lava in the Western Snake River Plain, Idaho.

NASA Astrophysics Data System (ADS)

Steenberg, L.; Gruber, B.; Boroughs, S.; Wolff, J.

2015-12-01

The Brown's Creek rhyolite (BCR), ~70 km south of Boise, Idaho, erupted during a period of widespread rhyolitic volcanism in southwestern Idaho during the middle Miocene. However, the Brown's Creek unit has several characteristics that are unusual relative to near contemporaneous units in the Central Snake Rive Plain (CSRP) and units in the Western Snake River Plain (WSRP). The BCR can contain up to 40% phenocrysts, with some feldspar and quartz crystals in excess of 2 cm in diameter. A proximal vent location is particularly well exposed in the BCR, and appears as an elongated topographic "dome" with pervasive, chaotic and steep flow banding, ramp structures, and breccias. Evidence of dome building activity is also represented by a matrix supported deposit of ash and poorly sorted, angular, rhyolite clasts up to boulder size; which crops out in a small area near the vent. The BCR is among numerous units in the CSRP and WSRP that show evidence of interaction with ancient Lake Idaho (e.g. silicification, opalized zones, pepperites, etc), but the unconformity with the sedimentary rocks of the lake and its feeder streams, is extremely well preserved in the Brown's Creek rhyolite. Geochemically, the Brown's Creek rhyolite shows greater compositional variation in comparison to other individual units in the region. This variation (e.g. Ba/Sr and Zr/Nb) may be a result of variable crystal cargo in hand samples, but could potentially represent a zoned magma body, which is also extremely rare in the CSRP or WSRP. A limited number of samples have trace element concentrations/ratios (e.g. Rb, U, and Th) that may indicate the presence of a second unit underlying the dominant outcrops of BCR, but Nb/Ta ratios are relatively invariant across the entire BCR suite; if there are two units in the BCR, their sources are the same or very similar.

The Role of Alpine Wetlands as Hot Spots of Dissolved Organic Carbon Fluxes in the East River, Colorado

NASA Astrophysics Data System (ADS)

Winnick, M.; Rainaldi, G. R.; Lawrence, C. R.; McCormick, M. E.; Hsu, H. T.; Druhan, J. L.; Williams, K. H.; Maher, K.

2016-12-01

Dissolved organic carbon (DOC) is a critical chemical attribute of freshwater systems, affecting nutrient availability, toxicity and solubility of metals, and biological activity via the absorption of light and microbial consumption of O2 during DOC mineralization. Although DOC contributions to streams are distributed across the landscape in the shallow subsurface, many studies have demonstrated area-outsized contributions from riparian zones with high biological productivity and low subsurface O2 concentrations. In the East River, CO, a high-elevation watershed located in the central Rocky Mountains, initial observations show that DOC concentrations of two tributaries, Rock Creek and Gothic Creek, are elevated by 3-10 times compared to concentrations in the main East River and its other tributaries. These elevated concentrations are qualitatively linked to the unique presence of large wetlands in the headwaters of Rock and Gothic creeks, which due to potential anoxic conditions, experience reduced rates of organic matter decomposition and serve as an elevated source of DOC. In this study we quantify the cycling of organic matter in these alpine wetlands and their area-outsized contributions to East River DOC fluxes. We present concentration profiles of DOC along stream reaches and along subsurface flowpaths that span the transition from hillslope to wetland coupled with high-resolution mapping of chronically-saturated zones and calculate area-weighted fluxes of DOC from wetlands to Rock and Gothic creeks at multiple times through the 2016 growing season. Additionally, soil and groundwater DOC fluxes are compared with depth-resolved organic carbon content from soil cores, substrate quality (C:N), and soil surface CO2 fluxes to evaluate organic carbon budgets in the hillslope and wetland areas feeding Rock Creek. The characterization of these hotspots of DOC generation and transport in the East River is vital to the ability to predict nutrient cycling changes into the future.

Dry creek long-term watershed study: the effects of harvesting in streamside management zones and adjacent uplands of riparian corridors on avian communities in the Coastal Plain of Georgia

Treesearch

Merideth P. Grooms; J. Drew Lanham; T. Bently Wigley

2006-01-01

We evaluated the effects of Best Management Practices (BMPs) harvesting on avian communities associated with headwater streams in the Georgia Coastal Plain. Two watersheds served as references, with no timber harvesting, and two treatment watersheds were clearcut with retention of Streamside Management Zones (SMZs) according to Georgia BMPs for forestry. Bird...

Oyster Reef Communities in the Chesapeake Bay: A Brief Primer. VORTEX: Virginia's Oyster Reef Teaching EXperience.

ERIC Educational Resources Information Center

Harding, Juliana M.; Mann, Roger; Clark, Vicki P.

This document introduces Virginia's Oyster Reef Teaching EXperience (VORTEX), which is an interdisciplinary program focusing on the importance of oyster reef communities in the Chesapeake Bay ecosystem. The VORTEX program uses field and laboratory experience supported by multimedia instruction. This document presents an overview on the biology of…

Water quality parameters and total aerobic bacterial and vibrionaceae loads in eastern oysters (Crassostrea virginica) from oyster gardening sites

USDA-ARS?s Scientific Manuscript database

Oyster gardening is a practice designed to restore habitat for marine life and to improve water quality. This study determined physical and chemical water quality parameters at two oyster gardening sites in the Delaware Inland Bays and compared them with total aerobic bacteria and Vibrionaceae conc...

The risk of Vibrio parahaemolyticus infections associated with consumption of raw oysters as affected by processing and distribution conditions in Taiwan

USDA-ARS?s Scientific Manuscript database

The steadily increased consumption of raw oysters in Taiwan warrants an assessment of the risk (probability of illness) of raw oyster consumption attributed by Vibrio parahaemolyticus. The aim of this study was to estimate the risk of V. parahaemolyticus infection associated with raw oyster consumpt...

Ordovician and Silurian Phi Kappa and Trail Creek formations, Pioneer Mountains, central Idaho; stratigraphic and structural revisions, and new data on graptolite faunas

USGS Publications Warehouse

Dover, James H.; Berry, William B.N.; Ross, Reuben James

1980-01-01

Recent geologic mapping in the northern Pioneer Mountains combined with the identification of graptolites from 116 new collections indicate that the Ordovician and Silurian Phi Kappa and Trail Creek Formations occur in a series of thrust-bounded slices within a broad zone of imbricate thrust faulting. Though confirming a deformational style first reported in a 1963 study by Michael Churkin, our data suggest that the complexity and regional extent of the thrust zone were not previously recognized. Most previously published sections of the Phi Kappa and Trail Creek Formations were measured across unrecognized thrust faults and therefore include not only structural repetitions of graptolitic Ordovician and Silurian rocks but also other tectonically juxtaposed lithostratigraphic units of diverse ages as well. Because of this discovery, the need to reconsider the stratigraphic validity of these formations and their lithology, nomenclature, structural distribution, facies relations, and graptolite faunas has arisen. The Phi Kappa Formation in most thrust slices has internal stratigraphic continuity despite the intensity of deformation to which it was subjected. As revised herein, the Phi Kappa Formation is restricted to a structurally repeated succession of predominantly black, carbonaceous, graptolitic argillite and shale. Some limy, light-gray-weathering shale occurs in the middle part of the section, and fine-grained locally pebbly quartzite is present at the base. The basal quartzite is here named the Basin Gulch Quartzite Member of the Phi Kappa. The Phi Kappa redefined on a lithologic basis represents the span of Ordovician time from W. B. N. Berry's graptolite zones 2-4 through 15 and also includes approximately 17 m of lithologically identical shale of Early and Middle Silurian age at the top. The lower contact of the formation as revised is tectonic. The Phi Kappa is gradationally overlain by the Trail Creek Formation as restricted herein. Most of the coarser clastic rocks reported in previously measured sections of the Phi Kappa, as well as the sequence along Phi Kappa Creek from which the name originates, are excluded from the Phi Kappa as revised and are reassigned to two structural plates of Mississippian Copper Basin Formation; other strata now excluded from the formation are reassigned to the Trail Creek Formation and to an unnamed Silurian and Devonian unit. As redefined, the Phi Kappa Formation is only about 240 m thick, compared with the 3,860 m originally estimated, and it occupies only about 25 percent of the outcrop area previously mapped in 1930 by H. G. Westgate and C. P. Ross. Despite this drastic reduction in thickness and the exclusion of the rocks along Phi Kappa Creek, the name Phi Kappa is retained because of widely accepted prior usage to denote the Ordovician graptolitic shale facies of central Idaho, and because the Phi Kappa Formation as revised is present in thrust slices on Phi Kappa Mountain, at the head of Phi Kappa Creek. The lithic and faunal consistency of this unit throughout the area precludes the necessity for major facies telescoping along individual faults within the outcrop belt. However, tens of kilometers of tectonic shortening seems required to juxtapose the imbricated Phi Kappa shale facies with the Middle Ordovician part of the carbonate and quartzite shale sequence of east central Idaho. The shelf rocks are exposed in the Wildhorse structural window of the northeastern Pioneer Mountains, and attain a thickness of at least 1,500 m throughout the region north and east of the Pioneer Mountains. The Phi Kappa is in direct thrust contact on intensely deformed medium- to high-grade metamorphic equivalents of the same shelf sequence in the Pioneer window at the south end of the Phi Kappa-Trail Creek outcrop belt. Along East Pass, Big Lake, and Pine Creeks, north of the Pioneer Mountains, some rocks previously mapped as Ramshorn Slate are lithologically and faunally equivalent to the P

Hydrogeology and simulation of ground-water flow in the thick regolith-fractured crystalline rock aquifer system of Indian Creek basin, North Carolina

USGS Publications Warehouse

Daniel, Charles C.; Smith, Douglas G.; Eimers, Jo Leslie

1997-01-01

The Indian Creek Basin in the southwestern Piedmont of North Carolina is one of five type areas studied as part of the Appalachian Valleys-Piedmont Regional Aquifer-System analysis. Detailed studies of selected type areas were used to quantify ground-water flow characteristics in various conceptual hydrogeologic terranes. The conceptual hydrogeologic terranes are considered representative of ground-water conditions beneath large areas of the three physiographic provinces--Valley and Ridge, Blue Ridge, and Piedmont--that compose the Appalachian Valleys-Piedmont Regional Aquifer-System Analysis area. The Appalachian Valleys-Piedmont Regional Aquifer-System Analysis study area extends over approximately 142,000 square miles in 11 states and the District of Columbia in the Appalachian highlands of the Eastern United States. The Indian Creek type area is typical of ground-water conditions in a single hydrogeologic terrane that underlies perhaps as much as 40 percent of the Piedmont physiographic province. The hydrogeologic terrane of the Indian Creek model area is one of massive and foliated crystalline rocks mantled by thick regolith. The area lies almost entirely within the Inner Piedmont geologic belt. Five hydrogeologic units occupy major portions of the model area, but statistical tests on well yields, specific capacities, and other hydrologic characteristics show that the five hydrogeologic units can be treated as one unit for purposes of modeling ground-water flow. The 146-square-mile Indian Creek model area includes the Indian Creek Basin, which has a surface drainage area of about 69 square miles. The Indian Creek Basin lies in parts of Catawba, Lincoln, and Gaston Counties, North Carolina. The larger model area is based on boundary conditions established for digital simulation of ground-water flow within the smaller Indian Creek Basin. The ground-water flow model of the Indian Creek Basin is based on the U.S. Geological Survey?s modular finite-difference ground-water flow model. The model area is divided into a uniformly spaced grid having 196 rows and 140 columns. The grid spacing is 500 feet. The model grid is oriented to coincide with fabric elements such that rows are oriented parallel to fractures (N. 72? E.) and columns are oriented parallel to foliation (N. 18? W.). The model is discretized vertically into 11 layers; the top layer represents the soil and saprolite of the regolith, and the lower 10 layers represent bedrock. The base of the model is 850 feet below land surface. The top bedrock layer, which is only 25 feet thick, represents the transition zone between saprolite and unweathered bedrock. The assignment of different values of transmissivity to the bedrock according to the topographic setting of model cells and depth results in inherent lateral and vertical anisotropy in the model with zones of high transmissivity in bedrock coinciding with valleys and draws, and zones of low transmissivity in bedrock coinciding with hills and ridges. Lateral anisotropy tends to be most pronounced in the north-northwest to south-southeast direction. Transmissivities decrease nonlineraly with depth. At 850 feet, depending on topographic setting, transmissivities have decreased to about 1 to 4 percent of the value of transmissivity immediately below the regolith-bedrock interface. The model boundaries are, for the most part, specified-flux boundaries that coincide with streams that surround the Indian Creek Basin. The area of active model nodes within the boundaries is about 146 square miles and has about 17,400 active cells. The numerical model is designed not as a predictive tool, but as an interpretive one. The model is designed to help gain insight into flow-system dynamics. Predictive capabilities of the numerical model are limited by the constraints placed on the flow system by specified fluxes and recharge distribution. Results of steady-state analyses that simulate long-term, average annual conditi

Flood of October 8, 1962, on Bachman Branch and Joes Creek at Dallas, Texas

USGS Publications Warehouse

Ruggles, Frederick H.

1966-01-01

This report presents hydrologic data that enable the user to define areas susceptible to flooding and to evaluate the flood hazard along Bachman Branch and Joes Creek. The data provide a technical basis for making sound decisions concerning the use of flood-plain lands. The report will be useful for preparing building and zoning regulations, locating waste disposal facilities, purchasing unoccupied land, developing recreational areas, and managing surface water in relation to ground-water resources. This is one of the series of reports delineating the flood hazard on streams in the Dallas area.

Quantification of mass loading to Strawberry Creek near the Gilt Edge mine, Lawrence County, South Dakota, June 2003

USGS Publications Warehouse

Kimball, Briant A.; Runkel, Robert L.; Walton-Day, Katherine; Williamson, Joyce E.

2006-01-01

Although remedial actions have taken place at the Gilt Edge mine in the Black Hills of South Dakota, questions remain about a possible hydrologic connection along shear zones between some of the pit lakes at the mine site and Strawberry Creek. Spatially detailed chemical sampling of stream and inflow sites occurred during low-flow conditions in June 2003 as part of a mass-loading study by the U.S. Geological Survey to investigate the possible connection of shear zones to the stream. Stream discharge was calculated by tracer dilution; discharge increased by 25.3 liters per second along the study reach, with 9.73 liters per second coming from three tributaries and the remaining increase coming from small springs and dispersed, subsurface inflow. Chemical differences among inflow samples were distinguished by cluster analysis and indicated that inflows ranged from those unaffected by interaction with mine wastes to those that could have been affected by drainage from pit lakes. Mass loading to the stream from several inflows resulted in distinct chemical changes in stream water along the study reach. Mass loading of the mine-related metals, including cadmium, copper, nickel, and zinc, principally occurred from the discharge from the Gilt Edge mine, and those metals were substantially attenuated downstream. Secondary loadings of metals occurred in the vicinity of the Oro Fino shaft and from two more inflows about 200 m downstream from there. These are both locations where shear zones intersect the stream and may indicate loading associatedwith these zones. Loading downstream from the Oro Fino shaft had a unique chemical character, high in base-metal concentrations, that could indicate an association with water in the pit lakes. The loading from these downstream sources, however, is small in comparison to that from the initial mine discharge and does not appear to have a substantial impact on Strawberry Creek.

Comparing Models and Methods for the Delineation of Stream Baseflow Contribution Areas

NASA Astrophysics Data System (ADS)

Chow, R.; Frind, M.; Frind, E. O.; Jones, J. P.; Sousa, M.; Rudolph, D. L.; Nowak, W.

2016-12-01

This study addresses the delineation of areas that contribute baseflow to a stream reach, also known as stream capture zones. Such areas can be delineated using standard well capture zone delineation methods, with three important differences: (1) natural gradients are smaller compared to those produced by supply wells and are therefore subject to greater numerical errors, (2) stream discharge varies seasonally, and (3) stream discharge varies spatially. This study focuses on model-related uncertainties due to parameter non-uniqueness, discretization schemes, and particle tracking algorithms. The methodology is applied to the Alder Creek watershed in southwestern Ontario. Four different model codes are compared: HydroGeoSphere, WATFLOW, MODFLOW, and FEFLOW. In addition, two delineation methods are compared: reverse particle tracking and reverse transport, where the latter considers local-scale parameter uncertainty by using a macrodispersion term to produce a capture probability plume. The results from this study indicate that different models can calibrate acceptably well to the same data and produce very similar distributions of hydraulic head, but can produce different capture zones. The stream capture zone is found to be highly sensitive to the particle tracking algorithm. It was also found that particle tracking by itself, if applied to complex systems such as the Alder Creek watershed, would require considerable subjective judgement in the delineation of stream capture zones. Reverse transport is an alternate approach that provides probability intervals for the baseflow contribution areas. In situations where the two approaches agree, the confidence in the delineation is reinforced.

Small-scale structural heterogeneity and well-communication problems in the Granny Creek oil field of West Virginia

DOE Office of Scientific and Technical Information (OSTI.GOV)

Zheng, L.; Wilson, T.H.; Shumaker, R.C.

1993-08-01

Seismic interpretations of the Granny Creek oil field in West Virginia suggest the presence of numerous small-scale fracture zones and faults. Seismic disruptions interpreted as faults and/or fracture zones are represented by abrupt reflection offsets, local amplitude reductions, and waveform changes. These features are enhanced through reprocessing, and the majority of the improvements to the data result from the surface consistent application of zero-phase deconvolution. Reprocessing yields a 20% improvement of resolution. Seismic interpretations of these features as small faults and fracture zones are supported by nearby offset vertical seismic profiles and by their proximity to wells between which directmore » communication occurs during waterflooding. Four sets of faults are interpreted based on subsurface and seismic data. Direct interwell communication is interpreted to be associated only with a northeast-trending set of faults, which are believed to have detached structural origins. Subsequent reactivation of deeper basement faults may have opened fractures along this trend. These faults have a limited effect on primary production, but cause many well-communication problems and reduce secondary production. Seismic detection of these zones is important to the economic and effective design of secondary recovery operations, because direct well communication often results in significant reduction of sweep efficiency during waterflooding. Prior information about the location of these zones would allow secondary recovery operations to avoid potential problem areas and increase oil recovery.« less

Deformation across the Pacific-North America plate boundary near San Francisco, California

USGS Publications Warehouse

Prescott, W.H.; Savage, J.C.; Svarc, J.L.; Manaker, D.

2001-01-01

We have detected a narrow zone of compression between the Coast Ranges and the Great Valley, and we have estimated slip rates for the San Andreas, Rodgers Creek, and Green Valley faults just north of San Francisco. These results are based on an analysis of campaign and continuous Global Positioning System (GPS) data collected between 1992 and 2000 in central California. The zone of compression between the Coast Ranges and the Great Valley is 25 km wide. The observations clearly show 3.8??1.5 mm yr-1 of shortening over this narrow zone. The strike slip components are best fit by a model with 20.8??1.9 mm yr-1 slip on the San Andreas fault, 10.3??2.6 mm yr-1 on the Rodgers Creek fault, and 8.1??2.1 mm yr-1 on the Green Valley fault. The Pacific-Sierra Nevada-Great Valley motion totals 39.2??3.8 mm yr-1 across a zone that is 120 km wide (at the latitude of San Francisco). Standard deviations are one ??. The geodetic results suggest a higher than geologic rate for the Green Valley fault. The geodetic results also suggest an inconsistency between geologic estimates of the San Andreas rate and seismologic estimates of the depth of locking on the San Andreas fault. The only convergence observed is in the narrow zone along the border between the Great Valley and the Coast Ranges.

Hemocytes Are Sites of Enteric Virus Persistence within Oysters ▿

PubMed Central

Provost, Keleigh; Dancho, Brooke A.; Ozbay, Gulnihal; Anderson, Robert S.; Richards, Gary P.; Kingsley, David H.

2011-01-01

The goal of this study was to determine how enteric viruses persist within shellfish tissues. Several lines of novel evidence show that phagocytic blood cells (hemocytes) of Eastern oysters (Crassostrea virginica) play an important role in the retention of virus particles. Our results demonstrated an association of virus contamination with hemocytes but not with hemolymph. Live oysters contaminated overnight with hepatitis A virus (HAV) and murine norovirus (MNV) had 56% and 80% of extractable virus associated with hemocytes, respectively. Transfer of HAV-contaminated hemocytes to naïve (virus-free) oysters resulted in naïve oyster meat testing HAV positive for up to 3 weeks. Acid tolerance of HAV, MNV, poliovirus (PV), and feline calicivirus (FCV) correlated with the ability of each virus to persist within oysters. Using reverse transcription-PCR (RT-PCR) to evaluate persistence of these viruses in oysters, we showed that HAV persisted the longest (>21 days) and was most acid resistant, MNV and PV were less tolerant of acidic pH, persisting for up to 12 days and 1 day, respectively, and FCV did not persist (<1 day) within oysters and was not acid tolerant. This suggests that the ability of a virus to tolerate the acidic conditions typical of phagolysosomal vesicles within hemocytes plays a role in determining virus persistence in shellfish. Evaluating oyster and hemocyte homogenates and live contaminated oysters as a prelude to developing improved viral RNA extraction methods, we found that viruses were extracted more expediently from hemocytes than from whole shellfish tissues and gave similar RT-PCR detection sensitivities. PMID:21948840

Human enteroviruses in oysters and their overlying waters.

PubMed Central

Goyal, S M; Gerba, C P; Melnick, J L

1979-01-01

The presence of enteroviruses in oysters and oyster-harvesting waters of the Texas Gulf coast was monitored over a period of 10 months. Viruses were detected in water and oyster samples obtained from areas both open and closed to shellfish harvesting. Viruses were detected periodically in waters that met current bacteriological standards for shellfish harvesting. No significant statistical relationship was demonstrated between virus concentration in oysters and the bacteriological and physiochemical quality of water and shellfish. Viruses in water were, however, moderately correlated with total coliforms in water and oysters and with fecal coliforms in oysters. Total coliforms in water were realted to total coliforms in sediment were related only to total coliforms in sediment. Among the physiochemical characteristics of water, turbidity was related statistically to the organic matter content of water and to fecal coliforms in water. There was a marked effect of rainfall on the bacteriological quality of water. Of a total of 44 water samples, 26 yielded virus in concentrations from 4 to 167 plaque-forming units per 100-gallon (ca. 378.5-liter) sample. Of a total of 40 pools of 10 to 12 oysters each, virus was found in 14 pools at a concentration of 6 to 224 plaque-forming units per 100 g of oyster meat. On five occasions, virus was found in water samples when no virus could be detected in oysters harvested from the same sites. This study indicates that current bacteriological standards for determining the safety of shellfish and shellfish-growing waters do no reflect the occurrence of enteroviruses. PMID:222210

Influence of Salmonella enterica Serovar Typhimurium ssrB on Colonization of Eastern Oysters (Crassostrea virginica) as Revealed by a Promoter Probe Screen

PubMed Central

Cox, Clayton E.; Wright, Anita C.; McClelland, Michael

2015-01-01

Although Salmonella has been isolated from 7.4 to 8.6% of domestic raw oysters, representing a significant risk for food-borne illness, little is known about the factors that influence their initial colonization by Salmonella. This study tested the hypothesis that specific regulatory changes enable a portion of the invading Salmonella population to colonize oysters. An in vivo promoter probe library screen identified 19 unique regions as regulated during colonization. The mutants in the nearest corresponding downstream genes were tested for colonization defects in oysters. Only one mutation, in ssrB, resulted in a significantly reduced ability to colonize oysters compared to that of wild-type Salmonella. Because ssrB regulates Salmonella pathogenicity island 2 (SPI-2)-dependent infections in vertebrate macrophages, the possibility that ssrB mediated colonization of oyster hemocytes in a similar manner was examined. However, no difference in hemocyte colonization was observed. The complementary hypothesis that signal exchange between Salmonella and the oyster's native microbial community aids colonization was also tested. Signals that triggered responses in quorum sensing (QS) reporters were shown to be produced by oyster-associated bacteria and present in oyster tissue. However, no evidence for signal exchange was observed in vivo. The sdiA reporter responded to salinity, suggesting that SdiA may also have a role in environmental sensing. Overall, this study suggests the initial colonization of live oysters by Salmonella is controlled by a limited number of regulators, including ssrB. PMID:26497459

Microbiological quality and bacterial diversity of the tropical oyster Crassostrea rhizophorae in a monitored farming system and from natural stocks.

PubMed

Silva Neta, M T; Maciel, B M; Lopes, A T S; Marques, E L S; Rezende, R P; Boehs, G

2015-12-02

Microbiological evaluation is one of the most important parameters for analyzing the viability of an oyster farming system, which addresses public health and ecological concerns. Here, the microbiological quality of the oyster Crassostrea rhizophorae cultivated in a monitored environment and from natural beds in Bahia, northeastern Brazil, was determined. Bacterial diversity in oysters was measured by polymerase chain reaction-denaturing gradient gel electrophoresis. Sequence analysis revealed that most bacterial species showed similarity with uncultured or unidentified bacteria from environmental samples, and were clustered into the phylum Proteobacteria. Diverse bacteria from cultivated (monitored) oyster samples were grouped in the same cluster with a high similarity index (above 79%). Microbiological analyses revealed that these oysters did not contain pathogens. These results reflect the natural balance of the microbial communities essential to the maintenance of health and in inhibiting pathogen colonization in the oyster. On the other hand, bacterial diversity of samples from native stocks in extractive areas displayed a similarity index varying between 55 and 77%, and all samples were clustered separately from each other and from the cluster of samples derived from the cultivation area. Microbiological analyses showed that oysters from the extractive area were not fit for human consumption. This reflected a different composition of the microbial community in this area, probably resulting from anthropic impact. Our study also demonstrated that low temperatures and high rainfall limits the bacterial concentration in tropical oysters. This is the first study analyzing the total bacterial community profiles of the oyster C. rhizophorae.

Human enteroviruses in oysters and their overlying waters.

PubMed

Goyal, S M; Gerba, C P; Melnick, J L

1979-03-01

The presence of enteroviruses in oysters and oyster-harvesting waters of the Texas Gulf coast was monitored over a period of 10 months. Viruses were detected in water and oyster samples obtained from areas both open and closed to shellfish harvesting. Viruses were detected periodically in waters that met current bacteriological standards for shellfish harvesting. No significant statistical relationship was demonstrated between virus concentration in oysters and the bacteriological and physiochemical quality of water and shellfish. Viruses in water were, however, moderately correlated with total coliforms in water and oysters and with fecal coliforms in oysters. Total coliforms in water were realted to total coliforms in sediment were related only to total coliforms in sediment. Among the physiochemical characteristics of water, turbidity was related statistically to the organic matter content of water and to fecal coliforms in water. There was a marked effect of rainfall on the bacteriological quality of water. Of a total of 44 water samples, 26 yielded virus in concentrations from 4 to 167 plaque-forming units per 100-gallon (ca. 378.5-liter) sample. Of a total of 40 pools of 10 to 12 oysters each, virus was found in 14 pools at a concentration of 6 to 224 plaque-forming units per 100 g of oyster meat. On five occasions, virus was found in water samples when no virus could be detected in oysters harvested from the same sites. This study indicates that current bacteriological standards for determining the safety of shellfish and shellfish-growing waters do no reflect the occurrence of enteroviruses.

High pressure treatment changes spoilage characteristics and shelf life of Pacific oysters ( Crassostrea gigas) during refrigerated storage

NASA Astrophysics Data System (ADS)

Cao, Rong; Zhao, Ling; Liu, Qi

2017-04-01

The effects of high pressure (HP) treatment on spoilage characteristic and shelf life extension of Pacific oysters ( Crassostrea gigas) during refrigerated storage were studied. Results showed that HP treatment of 275 MPa for 3 min or 300 MPa for 2 min could achieve 100% full release of oyster adductor muscle, pressures higher than 350 MPa caused excessive release as the shells of oysters were broken, thus use of higher pressures should be cautious in oyster processing industry because of its adverse impact on the appearance of shells. HP treatment (300 MPa, 2 min) was proper for the shucking of Pacific oyster ( Crassostrea gigas) in China. This treatment caused no organoleptic disadvantage. Moreover, HP treatment resulted in obvious differences in biochemical spoilage indicators (pH, TVB-N and TBARS) changes and volatile compounds profile determined by electronic nose during storage. HP treatment (300 MPa, 2 min) also led to a reduction of aerobic bacterial count (APC) by 1.27 log cycles. Furthermore, the APC values of oysters treated by HP were always lower than those of the control samples during storage. Based on the organoleptic, biochemical and microbiological indicators, shelf life of 6-8 d for control and 12 d for HP-treated oysters could be expected. HP treatment showed great potential in oyster processing and preservation.

Prevalence of Perkinsus marinus (dermo), Haplosporidium nelsoni (MSX), and QPX in bivalves of Delaware's inland bays and quantitative, high-throughput diagnosis of dermo by QPCR.

PubMed

Ulrich, Paul N; Ewart, John W; Marsh, Adam G

2007-01-01

Restoration of oyster reef habitat in the Inland Bays of Delaware was accompanied by an effort to detect and determine relative abundance of the bivalve pathogens Perkinsus marinus, Haplosporidium nelsoni, and QPX. Both the oyster Crassostrea virginica and the clam Mercenaria mercenaria were sampled from the bays. In addition, oysters were deployed at eight sites around the bays as sentinels for the three parasites. Perkinsus marinus prevalence was measured with a real-time, quantitative polymerase chain reaction (PCR) methodology that enabled high-throughput detection of as few as 31 copies of the ribosomal non-transcribed spacer region in 500 ng oyster DNA. The other pathogens were assayed using PCR with species-specific primers. Perkinsus marinus was identified in Indian River Bay at moderate prevalence ( approximately 40%) in both an artificial reef and a wild oyster population whereas sentinel oysters were PCR-negative after 3-months exposure during summer and early fall. Haplosporidium nelsoni was restricted to one oyster deployed in Little Assawoman Bay. QPX and P. marinus were not detected among wild clams. While oysters in these bays have historically been under the greatest threat by MSX, it is apparent that P. marinus currently poses a greater threat to recovery of oyster aquaculture in Delaware's Inland Bays.

Oyster Reef Communities in the Chesapeake Bay. Virginia Institute of Marine Science Educational Series. [CD-ROM].

ERIC Educational Resources Information Center

Harding, Juliana M.; Mann, Roger; Clark, Vicki P.

This CD-ROM, Oyster Reef Communities in the Chesapeake Bay, describes oyster reefs, reef communities, and their roles in the Chesapeake Bay ecosystem. Detailed descriptions of scientific research methods and techniques used to monitor and describe oyster reef communities as well as applications of the resulting data are provided. The CD-ROM was…

46 CFR 2.01-50 - Persons other than crew on towing, oyster, or fishing steam vessels.

Code of Federal Regulations, 2011 CFR

2011-10-01

... 46 Shipping 1 2011-10-01 2011-10-01 false Persons other than crew on towing, oyster, or fishing... than crew on towing, oyster, or fishing steam vessels. (a) A steam vessel engaged in towing, oyster dredging and planting, and fishing may be permitted to carry persons in addition to its crew. (b) The...

46 CFR 2.01-50 - Persons other than crew on towing, oyster, or fishing steam vessels.

Code of Federal Regulations, 2012 CFR

2012-10-01

... 46 Shipping 1 2012-10-01 2012-10-01 false Persons other than crew on towing, oyster, or fishing... than crew on towing, oyster, or fishing steam vessels. (a) A steam vessel engaged in towing, oyster dredging and planting, and fishing may be permitted to carry persons in addition to its crew. (b) The...

46 CFR 2.01-50 - Persons other than crew on towing, oyster, or fishing steam vessels.

Code of Federal Regulations, 2010 CFR

2010-10-01

... 46 Shipping 1 2010-10-01 2010-10-01 false Persons other than crew on towing, oyster, or fishing steam vessels. 2.01-50 Section 2.01-50 Shipping COAST GUARD, DEPARTMENT OF HOMELAND SECURITY PROCEDURES... than crew on towing, oyster, or fishing steam vessels. (a) A steam vessel engaged in towing, oyster...

Effects of oyster harvest activities on Louisiana reef habitat and resident nekton communities

USGS Publications Warehouse

Beck, Steve; LaPeyre, Megan K.

2015-01-01

Oysters are often cited as “ecosystem engineers” because they modify their environment. Coastal Louisiana contains extensive oyster reef areas that have been harvested for decades, and whether differences in habitat functions exist between those areas and nonharvested reefs is unclear. We compared reef physical structure and resident community metrics between these 2 subtidal reef types. Harvested reefs were more fragmented and had lower densities of live eastern oysters (Crassostrea virginica) and hooked mussels (Ischadium recurvum) than the nonharvested reefs. Stable isotope values (13C and 15N) of dominant nekton species and basal food sources were used to compare food web characteristics. Nonpelagic source contributions and trophic positions of dominant species were slightly elevated at harvested sites. Oyster harvesting appeared to have decreased the number of large oysters and to have increased the percentage of reefs that were nonliving by decreasing water column filtration and benthopelagic coupling. The differences in reef matrix composition, however, had little effect on resident nekton communities. Understanding the thresholds of reef habitat areas, the oyster density or oyster size distribution below which ecosystem services may be compromised, remains key to sustainable management.

Inducible variation in anaerobic energy metabolism reflects hypoxia tolerance across the intertidal and subtidal distribution of the Pacific oyster (Crassostrea gigas).

PubMed

Meng, Jie; Wang, Ting; Li, Li; Zhang, Guofan

2018-07-01

Pacific oyster (Crassostrea gigas) distribute a steep gradient of environmental stress between intertidal and subtidal habits and provide insight into population-scale patterns and underlying processes of variation in physiological tolerance. In this study, 1-year-old-F 1 oysters, collected from subtidal and intertidal habitats, were obtained after common garden experiment. Genetic differentiation and physiological responses under air exposure were examined to determine whether they had evolved into local adapted subpopulations. Mortality rate, anaerobic glycolysis metabolism, and energy status indicated that oyster had initiated metabolism depression and anaerobic glycolysis metabolism in both intertidal and subtidal oysters under air exposure. However, the subtidal oysters displayed the larger energy metabolism depressions and the earlier anaerobic glycolysis responses. This may indicate that subtidal oysters were more sensitives to hypoxia stress, which may lead the higher mortality rate under long term of air exposure. Based on a common garden experimental design, we propose that this diversification may have a genetic background. Overall, the clear differences between intertidal and subtidal oysters under air exposure have provided an important reference for their aquaculture and transportation used in commercial production. Copyright © 2018. Published by Elsevier Ltd.

Analysis of environmental factors influencing salinity patterns, oyster growth, and mortality in lower Breton Sound Estuary, Louisiana using 20 years of data

USGS Publications Warehouse

LaPeyre, Megan K.; Geaghan, James; Decossas, Gary A.; La Peyre, Jerome F.

2016-01-01

Freshwater inflow characteristics define estuarine functioning by delivering nutrients, sediments, and freshwater, which affect biological resources and ultimately system production. Using 20 years of water quality, weather, and oyster growth and mortality data from Breton Sound Estuary (BSE), Louisiana, we examined the relationship of riverine, weather, and tidal influence on estuarine salinity, and the relationship of salinity to oyster growth and mortality. Mississippi River discharge was found to be the most important factor determining salinity patterns over oyster grounds within lower portions of BSE, with increased river flow associated with lowered salinities, while easterly winds associated with increased salinity were less influential. These patterns were consistent throughout the year. Salinity and temperature (season) were found to critically control oyster growth and mortality, suggesting that seasonal changes to river discharge affecting water quality over the oyster grounds have profound impacts on oyster populations. The management of oyster reefs in estuaries (such as BSE) requires an understanding of how estuarine hydrodynamics and salinity are influenced by forcing factors such as winds, river flow, and by the volume, timing, and location of controlled releases of riverine water.

Inactivation and elimination of human enteric viruses by Pacific oysters.

PubMed

McLeod, C; Hay, B; Grant, C; Greening, G; Day, D

2009-12-01

To investigate the comparative elimination of three different human enterically transmitted viruses [i.e. hepatitis A virus (HAV), norovirus (NoV) and poliovirus (PV)] and inactivation of HAV and PV by Pacific oysters. New Zealand grown Pacific oysters (Crassostrea gigas) were allowed to bioaccumulate HAV, NoV and PV. Samples of oyster gut, faeces and pseudofaeces were then analysed by using real-time RT-PCR to determine the amount of viral RNA and cell culture methods to identify changes in the number of plaque forming units. The results suggest that the majority of the PV present in the oyster gut and oyster faeces is noninfectious, while in contrast, most of the HAV detected in the oyster gut are infectious. Depuration experiments identified a large drop in the count of PV in the gut over a 23-h cleansing period, whereas the levels of HAV and NoV did not significantly decrease. Human enterically transmitted viruses are eliminated and inactivated at different rates by Pacific oysters. The research presented in this article has implications for risk management techniques that are used to improve the removal of infectious human enteric viruses from bivalve molluscs.

Annual dose of Taiwanese from the ingestion of 210Po in oysters.

PubMed

Lee, Hsiu-wei; Wang, Jeng-Jong

2013-03-01

Oysters around the coast of Taiwan were collected, dried, spiked with a (209)Po tracer for yield, digested with concentrated HNO(3) and H(2)O(2), and finally dissolved in 0.5 N HCl. The polonium was then spontaneously deposited onto a silver disc, and the activity of (210)Po was measured using an alpha spectrum analyzer equipped with a silicon barrier detector. Meanwhile, the internal effective dose of (210)Po coming from the intake of oysters by Taiwanese was evaluated. The results of the present study indicate that (210)Po average activity concentrations ranged from 23.4 ± 0.4 to 126 ± 94 Bq kg(-1) of fresh oysters. The oysters coming from Penghu island and Kinmen island regions contain higher concentrations of (210)Po in comparison with oysters from other regions of Taiwan. The value of (210)Po weighted average activity concentrations for all oyster samples studied is 25.9 Bq kg(-1). The annual effective dose of Taiwanese due to the ingestion of (210)Po in oysters was estimated to be 4.1 × 10(-2) mSv y(-1). Copyright © 2013. Published by Elsevier Ltd.

Incorporation of metabolites into glycogen and lipids of the oyster, crassostrea virginica

DOE Office of Scientific and Technical Information (OSTI.GOV)

Swift, M.L.; Humphrey, C.L.

1987-05-01

Groups of oysters, either fed or unfed, were exposed to U-{sup 14}C labelled D-glucose, L-asp, L-leu, L-ala or acetate for 6 hrs. Except for the glucose trials, the disappearance of radioactivity from the saline of the unfed oysters was greater (83%) than for the fed animals (65%). With glucose, 88% of the radioactivity disappeared in each trial. The specific radioactivity of glycogen isolated from oysters exposed to labelled glucose, asp and ala was 1283, 468 and 8.22 dpm/mg glycogen respectively. Radioactivity was found primarily in the triacylglycerols and phospholipids (PL) in fed oysters and in PL only in unfed oysters.more » Phosphatidyl choline, phosphatidyl ethanolamine, and a fraction containing phosphatidyl serine and phosphatidyl inositol, had 32%, 25% and 35-40% of the radioactivity respectively. Incorporation of total radioactivity into PL was 70% lower in unfed vs. fed trials, but the distribution of counts among the phospholipids classes was unchanged. Glycogenesis does not appear to be a significant pathway in the oyster. Apparently well-fed oysters are able to store excess dietary calories as lipid. During periods of starvation exogenous small metabolites along with glucose from glycogen are catabolized.« less

Is there a direct relationship between stress biomarkers in oysters and the amount of metals in the sediments where they inhabit?

PubMed

Rodriguez-Iruretagoiena, A; Rementeria, A; Zaldibar, B; de Vallejuelo, S Fdez-Ortiz; Gredilla, A; Arana, G; de Diego, A

2016-10-15

The effects exerted by metals in oysters are still a matter of debate and require more detailed studies. In this work we have investigated whether the health status of oysters are affected by the amount of metals present in the sediments of their habitat. Sediments and oysters were collected in the tidal part of the estuary of the Oka River (Basque Country), representative of other mesotidal, well mixed and short estuaries of the European Atlantic coast. The concentrations of 14 elements were determined in all the samples. Several biomarkers were also measured in the soft tissues of oysters. According to the concentrations found, the sediments were classified as non-toxic or slightly toxic. In good agreement, the histological alterations observed in oysters were not severe. Interestingly, in those sampling sites where the sediments showed relatively high metal concentrations, the metallic content in oysters was lower, and vice versa. Copyright © 2016 Elsevier Ltd. All rights reserved.

Ocean acidification increases the vulnerability of native oysters to predation by invasive snails

PubMed Central

Sanford, Eric; Gaylord, Brian; Hettinger, Annaliese; Lenz, Elizabeth A.; Meyer, Kirstin; Hill, Tessa M.

2014-01-01

There is growing concern that global environmental change might exacerbate the ecological impacts of invasive species by increasing their per capita effects on native species. However, the mechanisms underlying such shifts in interaction strength are poorly understood. Here, we test whether ocean acidification, driven by elevated seawater pCO2, increases the susceptibility of native Olympia oysters to predation by invasive snails. Oysters raised under elevated pCO2 experienced a 20% increase in drilling predation. When presented alongside control oysters in a choice experiment, 48% more high-CO2 oysters were consumed. The invasive snails were tolerant of elevated CO2 with no change in feeding behaviour. Oysters raised under acidified conditions did not have thinner shells, but were 29–40% smaller than control oysters, and these smaller individuals were consumed at disproportionately greater rates. Reduction in prey size is a common response to environmental stress that may drive increasing per capita effects of stress-tolerant invasive predators. PMID:24430847

Ocean acidification increases the vulnerability of native oysters to predation by invasive snails.

PubMed

Sanford, Eric; Gaylord, Brian; Hettinger, Annaliese; Lenz, Elizabeth A; Meyer, Kirstin; Hill, Tessa M

2014-03-07

There is growing concern that global environmental change might exacerbate the ecological impacts of invasive species by increasing their per capita effects on native species. However, the mechanisms underlying such shifts in interaction strength are poorly understood. Here, we test whether ocean acidification, driven by elevated seawater pCO₂, increases the susceptibility of native Olympia oysters to predation by invasive snails. Oysters raised under elevated pCO₂ experienced a 20% increase in drilling predation. When presented alongside control oysters in a choice experiment, 48% more high-CO₂ oysters were consumed. The invasive snails were tolerant of elevated CO₂ with no change in feeding behaviour. Oysters raised under acidified conditions did not have thinner shells, but were 29-40% smaller than control oysters, and these smaller individuals were consumed at disproportionately greater rates. Reduction in prey size is a common response to environmental stress that may drive increasing per capita effects of stress-tolerant invasive predators.

Benthic surveys of the historic pearl oyster beds of Qatar reveal a dramatic ecological change.

PubMed

Smyth, D; Al-Maslamani, I; Chatting, M; Giraldes, B

2016-12-15

The study aimed to confirm the presence of historic oyster banks of Qatar and code the biotopes present. The research also collated historical records and scientific publications to create a timeline of fishery activity. The oyster banks where once an extremely productive economic resource however, intense overfishing, extreme environmental conditions and anthropogenic impacts caused a fishery collapse. The timeline highlighted the vulnerability of ecosystem engineering bivalves if overexploited. The current status of the oyster banks meant only one site could be described as oyster dominant. This was unexpected as the sites were located in areas which once supported a highly productive oyster fishery. The research revealed the devastating effect that anthropogenic impacts can have on a relatively robust marine habitat like an oyster bed and it is hoped these findings will act as a driver to investigate and map other vulnerable habitats within the region before they too become compromised. Copyright © 2016 Elsevier Ltd. All rights reserved.

Defining optimal freshwater flow for oyster production: effects of freshet rate and magnitude of change and duration on eastern oysters and Perkinsus marinus infection

USGS Publications Warehouse

LaPeyre, Megan K.; Gossman, B.; La Peyre, Jerome F.

2009-01-01

In coastal Louisiana, the development of large-scale freshwater diversion projects has led to controversy over their effects on oyster resources. Using controlled laboratory experiments in combination with a field study, we examined the effects of pulsed freshwater events (freshet) of different magnitude, duration, and rate of change on oyster resources. Laboratory and field evidence indicate that low salinity events (<5 psu) decreased Perkinsus marinus infection intensities. Furthermore, when salinity was low (<5 psu), parasite infection intensities continued to decrease even as temperatures exceeded 20°C. At the same time, oyster growth was positively correlated with salinity. To maximize oyster production, data indicate that both low and high salinity events will be necessary.

Adult Pacific Oyster (Crassostrea gigas) May Have Light Sensitivity

PubMed Central

Yang, Yanjian; Li, Zhuang; Guo, Ting; Li, Yongchuan; Wang, Xiaotong

2015-01-01

Light-sensitivity is an important aspect of mollusk survival as it plays a vital role in reproduction and predator avoidance. In the Pacific oyster Crassostrea gigas light sensitivity has been demonstrated in the larval stage but has not yet been conclusively demonstrated in adult oysters. In this paper we describe an experiment which was undertaken to determine if adult Pacific oysters were sensitive to light. One LED flashlight was used to shine light onto adult oysters while they were filtering seawater through their shell openings. We found that the degree of opening increased gradually during the light period but rapidly decreased when the flashlight was turned off in the treated group but not in the control group. These results suggest that adult Pacific oyster may be sensitive to light. PMID:26474058

Streamflow losses in the Black Hills of western South Dakota

USGS Publications Warehouse

Hortness, Jon E.; Driscoll, Daniel G.

1998-01-01

Losses occur in numerous streams that cross outcrops of various sedimentary rocks that are exposed around the periphery of the Black Hills of South Dakota. These streamflow losses are recognized as an important source of local recharge to regional bedrock aquifers. Most streams lose all of their flow up to some threshold rate. Streamflow is maintained through a loss zone when the threshold is exceeded. Streamflow records for 86 measurement sites are used to determine bedrock loss thresholds for 24 area streams, which have individual loss thresholds that range from negligible (no loss) to as much as 50 cubic feet per second. In addition, insights are provided regarding springflow that occurs in the immediate vicinity of selected loss zones. Most losses occur to outcrops of the Madison Limestone and Minnelusa Formation. Losses to the Deadwood Formation probably are minimal. Losses to the Minnekahta Limestone generally are small; however, they are difficult to quantify because of potential losses to extensive alluvial deposits that commonly are located near Minnekahta outcrops. Loss thresholds for each stream are shown to be relatively constant, without measurable effects from streamflow rates or duration of flow through the loss zones. Calculated losses for measurements made during high-flow conditions generally have larger variability than calculated losses for low-flow conditions; however, consistent relations between losses and streamflow have not been identified. Some of this variability results from the inability to account for tributary inflows and changes in storage. Calculated losses are shown to decrease, in some cases, during periods of extended flow through loss zones. Decreased 'net' losses, however, generally can be attributed to springflow (ground-water discharge) within a loss zone, which may occur during prolonged periods of wet climatic conditions. Losses to unsaturated alluvial deposits located adjacent to the stream channels are found to have significant effects on determination of bedrock losses. Large losses occur in filling initial storage in unsaturated alluvial deposits downstream from loss zones, when bedrock loss thresholds are first exceeded. Losses to alluvial deposits in the range of tens of cubic feet per second and alluvial storage capacities in the range of hundreds of acre-feet are documented. Significant changes in loss thresholds for Grace Coolidge Creek, Spring Creek, and Whitewood Creek are documented. Introduction of large quantities of fine-grained sediments into these stream channels may have affected loss thresholds for various periods of time.

Rapid methods for extraction and concentration of poliovirus from oyster tissues.

PubMed

Richards, G P; Goldmintz, D; Green, D L; Babinchak, J A

1982-12-01

A procedure is discussed for the extraction of poliovirus from oyster meats by modification of several enterovirus extraction techniques. The modified method uses meat extract and Cat-Floc, a polycationic electrolyte, for virus extraction and concentration. Virus recovery from inoculated oyster homogenates is 93-120%. Adsorption of viruses to oyster proteins by acidification of homogenates does not affect virus recovery. Elution of viruses from oyster proteins appears more efficient at pH 9.5 than at pH 8.0. This technique is relatively simple, economical and requires only 2.5 h to complete the combined extraction and concentration procedure.

A Nonautochthonous U.S. Strain of Vibrio parahaemolyticus Isolated from Chesapeake Bay Oysters Caused the Outbreak in Maryland in 2010

PubMed Central

Haendiges, Julie; Jones, Jessica; Myers, Robert A.; Mitchell, Clifford S.; Butler, Erin

2016-01-01

ABSTRACT In the summer of 2010, Vibrio parahaemolyticus caused an outbreak in Maryland linked to the consumption of oysters. Strains isolated from both stool and oyster samples were indistinguishable by pulsed-field gel electrophoresis (PFGE). However, the oysters contained other potentially pathogenic V. parahaemolyticus strains exhibiting different PFGE patterns. In order to assess the identity, genetic makeup, relatedness, and potential pathogenicity of the V. parahaemolyticus strains, we sequenced 11 such strains (2 clinical strains and 9 oyster strains). We analyzed these genomes by in silico multilocus sequence typing (MLST) and determined their phylogeny using a whole-genome MLST (wgMLST) analysis. Our in silico MLST analysis identified six different sequence types (STs) (ST8, ST676, ST810, ST811, ST34, and ST768), with both of the clinical and four of the oyster strains being identified as belonging to ST8. Using wgMLST, we showed that the ST8 strains from clinical and oyster samples were nearly indistinguishable and belonged to the same outbreak, confirming that local oysters were the source of the infections. The remaining oyster strains were genetically diverse, differing in >3,000 loci from the Maryland ST8 strains. eBURST analysis comparing these strains with strains of other STs available at the V. parahaemolyticus MLST website showed that the Maryland ST8 strains belonged to a clonal complex endemic to Asia. This indicates that the ST8 isolates from clinical and oyster sources were likely not endemic to Maryland. Finally, this study demonstrates the utility of whole-genome sequencing (WGS) and associated analyses for source-tracking investigations. IMPORTANCE Vibrio parahaemolyticus is an important foodborne pathogen and the leading cause of bacterial infections in the United States associated with the consumption of seafood. In the summer of 2010, Vibrio parahaemolyticus caused an outbreak in Maryland linked to oyster consumption. Strains isolated from stool and oyster samples were indistinguishable by pulsed-field gel electrophoresis (PFGE). The oysters also contained other potentially pathogenic V. parahaemolyticus strains with different PFGE patterns. Since their identity, genetic makeup, relatedness, and potential pathogenicity were unknown, their genomes were determined by using next-generation sequencing. Whole-genome sequencing (WGS) analysis by whole-genome multilocus sequence typing (wgMLST) allowed (i) identification of clinical and oyster strains with matching PFGE profiles as belonging to ST8, (ii) determination of oyster strain diversity, and (iii) identification of the clinical strains as belonging to a clonal complex (CC) described only in Asia. Finally, WGS and associated analyses demonstrated their utility for trace-back investigations. PMID:26994080

A Nonautochthonous U.S. Strain of Vibrio parahaemolyticus Isolated from Chesapeake Bay Oysters Caused the Outbreak in Maryland in 2010.

PubMed

Haendiges, Julie; Jones, Jessica; Myers, Robert A; Mitchell, Clifford S; Butler, Erin; Toro, Magaly; Gonzalez-Escalona, Narjol

2016-06-01

In the summer of 2010, Vibrio parahaemolyticus caused an outbreak in Maryland linked to the consumption of oysters. Strains isolated from both stool and oyster samples were indistinguishable by pulsed-field gel electrophoresis (PFGE). However, the oysters contained other potentially pathogenic V. parahaemolyticus strains exhibiting different PFGE patterns. In order to assess the identity, genetic makeup, relatedness, and potential pathogenicity of the V. parahaemolyticus strains, we sequenced 11 such strains (2 clinical strains and 9 oyster strains). We analyzed these genomes by in silico multilocus sequence typing (MLST) and determined their phylogeny using a whole-genome MLST (wgMLST) analysis. Our in silico MLST analysis identified six different sequence types (STs) (ST8, ST676, ST810, ST811, ST34, and ST768), with both of the clinical and four of the oyster strains being identified as belonging to ST8. Using wgMLST, we showed that the ST8 strains from clinical and oyster samples were nearly indistinguishable and belonged to the same outbreak, confirming that local oysters were the source of the infections. The remaining oyster strains were genetically diverse, differing in >3,000 loci from the Maryland ST8 strains. eBURST analysis comparing these strains with strains of other STs available at the V. parahaemolyticus MLST website showed that the Maryland ST8 strains belonged to a clonal complex endemic to Asia. This indicates that the ST8 isolates from clinical and oyster sources were likely not endemic to Maryland. Finally, this study demonstrates the utility of whole-genome sequencing (WGS) and associated analyses for source-tracking investigations. Vibrio parahaemolyticus is an important foodborne pathogen and the leading cause of bacterial infections in the United States associated with the consumption of seafood. In the summer of 2010, Vibrio parahaemolyticus caused an outbreak in Maryland linked to oyster consumption. Strains isolated from stool and oyster samples were indistinguishable by pulsed-field gel electrophoresis (PFGE). The oysters also contained other potentially pathogenic V. parahaemolyticus strains with different PFGE patterns. Since their identity, genetic makeup, relatedness, and potential pathogenicity were unknown, their genomes were determined by using next-generation sequencing. Whole-genome sequencing (WGS) analysis by whole-genome multilocus sequence typing (wgMLST) allowed (i) identification of clinical and oyster strains with matching PFGE profiles as belonging to ST8, (ii) determination of oyster strain diversity, and (iii) identification of the clinical strains as belonging to a clonal complex (CC) described only in Asia. Finally, WGS and associated analyses demonstrated their utility for trace-back investigations. Copyright © 2016, American Society for Microbiology. All Rights Reserved.

Denitrification potential of the eastern oyster microbiome using a 16S rRNA gene based metabolic inference approach

PubMed Central

Bowman, Jeff S.; Piehler, Michael

2017-01-01

The eastern oyster (Crassostrea virginica) is a foundation species providing significant ecosystem services. However, the roles of oyster microbiomes have not been integrated into any of the services, particularly nitrogen removal through denitrification. We investigated the composition and denitrification potential of oyster microbiomes with an approach that combined 16S rRNA gene analysis, metabolic inference, qPCR of the nitrous oxide reductase gene (nosZ), and N2 flux measurements. Microbiomes of the oyster digestive gland, the oyster shell, and sediments adjacent to the oyster reef were examined based on next generation sequencing (NGS) of 16S rRNA gene amplicons. Denitrification potentials of the microbiomes were determined by metabolic inferences using a customized denitrification gene and genome database with the paprica (PAthway PRediction by phylogenetIC plAcement) bioinformatics pipeline. Denitrification genes examined included nitrite reductase (nirS and nirK) and nitrous oxide reductase (nosZ), which was further subdivided by genotype into clade I (nosZI) or clade II (nosZII). Continuous flow through experiments measuring N2 fluxes were conducted with the oysters, shells, and sediments to compare denitrification activities. Paprica properly classified the composition of microbiomes, showing similar classification results from Silva, Greengenes and RDP databases. Microbiomes of the oyster digestive glands and shells were quite different from each other and from the sediments. The relative abundance of denitrifying bacteria inferred by paprica was higher in oysters and shells than in sediments suggesting that oysters act as hotspots for denitrification in the marine environment. Similarly, the inferred nosZI gene abundances were also higher in the oyster and shell microbiomes than in the sediment microbiome. Gene abundances for nosZI were verified with qPCR of nosZI genes, which showed a significant positive correlation (F1,7 = 14.7, p = 6.0x10-3, R2 = 0.68). N2 flux rates were significantly higher in the oyster (364.4 ± 23.5 μmol N-N2 m-2 h-1) and oyster shell (355.3 ± 6.4 μmol N-N2 m-2 h-1) compared to the sediment (270.5 ± 20.1 μmol N-N2 m-2 h-1). Thus, bacteria carrying nosZI genes were found to be an important denitrifier, facilitating nitrogen removal in oyster reefs. In addition, this is the first study to validate the use of 16S gene based metabolic inference as a method for determining microbiome function, such as denitrification, by comparing inference results with qPCR gene quantification and rate measurements. PMID:28934286

Denitrification potential of the eastern oyster microbiome using a 16S rRNA gene based metabolic inference approach.

PubMed

Arfken, Ann; Song, Bongkeun; Bowman, Jeff S; Piehler, Michael

2017-01-01

The eastern oyster (Crassostrea virginica) is a foundation species providing significant ecosystem services. However, the roles of oyster microbiomes have not been integrated into any of the services, particularly nitrogen removal through denitrification. We investigated the composition and denitrification potential of oyster microbiomes with an approach that combined 16S rRNA gene analysis, metabolic inference, qPCR of the nitrous oxide reductase gene (nosZ), and N2 flux measurements. Microbiomes of the oyster digestive gland, the oyster shell, and sediments adjacent to the oyster reef were examined based on next generation sequencing (NGS) of 16S rRNA gene amplicons. Denitrification potentials of the microbiomes were determined by metabolic inferences using a customized denitrification gene and genome database with the paprica (PAthway PRediction by phylogenetIC plAcement) bioinformatics pipeline. Denitrification genes examined included nitrite reductase (nirS and nirK) and nitrous oxide reductase (nosZ), which was further subdivided by genotype into clade I (nosZI) or clade II (nosZII). Continuous flow through experiments measuring N2 fluxes were conducted with the oysters, shells, and sediments to compare denitrification activities. Paprica properly classified the composition of microbiomes, showing similar classification results from Silva, Greengenes and RDP databases. Microbiomes of the oyster digestive glands and shells were quite different from each other and from the sediments. The relative abundance of denitrifying bacteria inferred by paprica was higher in oysters and shells than in sediments suggesting that oysters act as hotspots for denitrification in the marine environment. Similarly, the inferred nosZI gene abundances were also higher in the oyster and shell microbiomes than in the sediment microbiome. Gene abundances for nosZI were verified with qPCR of nosZI genes, which showed a significant positive correlation (F1,7 = 14.7, p = 6.0x10-3, R2 = 0.68). N2 flux rates were significantly higher in the oyster (364.4 ± 23.5 μmol N-N2 m-2 h-1) and oyster shell (355.3 ± 6.4 μmol N-N2 m-2 h-1) compared to the sediment (270.5 ± 20.1 μmol N-N2 m-2 h-1). Thus, bacteria carrying nosZI genes were found to be an important denitrifier, facilitating nitrogen removal in oyster reefs. In addition, this is the first study to validate the use of 16S gene based metabolic inference as a method for determining microbiome function, such as denitrification, by comparing inference results with qPCR gene quantification and rate measurements.

Water quality simulation of sewage impacts on the west coast of Mumbai, India.

PubMed

Vijay, R; Khobragade, P J; Sohony, R A

2010-01-01

Most coastal cities use the ocean as a site of waste disposal where pollutant loading degrades the quality of coastal waters. Presently, the west coast of Mumbai receives partially treated effluent from wastewater treatment facilities through ocean outfalls and discharges into creeks as well as wastewater/sewage from various open drains and nallahs which affect the water quality of creek and coastal water. Therefore, the objective of this paper is to simulate and assess the hydrodynamic behaviour and water quality due to impact of sewage and wastewater discharges from the west coast of Mumbai. Hydrodynamics and water quality were simulated based on present conditions and validated by using measured tide, current data and observed DO, BOD and FC. Observed and simulated results indicated non compliance to standards in Malad, Mahim creeks and the impact zones of ocean outfalls. The developed model could be used for generating various conditions of hydrodynamics and water quality considering the improvement in wastewater collection systems, treatment levels and proper disposal for proper planning and management of creeks and coastal environment.

APORT: a program for the area-based apportionment of county variables to cells of a polar grid. [Airborne pollutant transport models

DOE Office of Scientific and Technical Information (OSTI.GOV)

Fields, D.E.; Little, C.A.

1978-11-01

The APORT computer code was developed to apportion variables tabulated for polygon-structured civil districts onto cells of a polar grid. The apportionment is based on fractional overlap between the polygon and the grid cells. Centering the origin of the polar system at a pollutant source site yields results that are very useful for assessing and interpreting the effects of airborne pollutant dissemination. The APOPLT graphics code, which uses the same data set as APORT, provides a convenient visual display of the polygon structure and the extent of the polar grid. The APORT/APOPLT methodology was verified by application to county summariesmore » of cattle population for counties surrounding the Oyster Creek, New Jersey, nuclear power plant. These numerical results, which were obtained using approximately 2-min computer time on an IBM System 360/91 computer, compare favorably to results of manual computations in both speed and accuracy.« less

Predicting the impacts of Mississippi River diversions and sea-level rise on spatial patterns of eastern oyster growth rate and production

USGS Publications Warehouse

Wang, Hongqing; Chen, Qin; La Peyre, Megan K.; Hu, Kelin; La Peyre, Jerome F.

2017-01-01

There remains much debate regarding the perceived tradeoffs of using freshwater and sediment diversions for coastal restoration in terms of balancing the need for wetland restoration versus preserving eastern oyster (Crassostrea virginica) production. Further complicating the issue, climate change-induced sea-level rise (SLR) and land subsidence are also expected to affect estuarine water quality. In this study, we developed a process-based numerical modeling system that couples hydrodynamic, water quality, and oyster population dynamics. We selected Breton Sound Estuary (BSE) (∼2740 km2) in the eastern Mississippi River Deltaic Plain since it is home to several of the largest public oyster seed grounds and private leases for the Gulf coast. The coupled oyster population model was calibrated and validated against field observed oyster growth data. We predicted the responses of oyster population in BSE to small- (142 m3 s−1) and large-scale (7080 m3 s−1) river diversions at the Caernarvon Freshwater Diversion structure planned in the 2012 Coastal Master Plan (Louisiana) under low (0.38 m) and high (1.44 m) relative sea-level rise (RSLR = eustatic SLR + subsidence) compared to a baseline condition (Year 2009). Model results showed that the large-scale diversion had a stronger negative impact on oyster population dynamics via freshening of the entire estuary, resulting in reduced oyster growth rate and production than RSLR. Under the large-scale diversion, areas with optimal oyster growth rates (>15 mg ash-free dry weight (AFDW) oyster−1 wk−1) and production (>500 g AFDW m−2 yr−1) would shift seaward to the southeastern edge of the estuary, turning the estuary into a very low oyster production system. RSLR however played a greater role than the small-scale diversion on the magnitude and spatial pattern of oyster growth rate and production. RSLR would result in an overall estuary-wide decrease in oyster growth rate and production as a consequence of decreased salinities in the middle and lower estuary because rising sea level likely causes increased stage and overbank flow downstream along the lower Mississippi River.

Survival of Salmonella Newport in oysters.

PubMed

Morrison, Christopher M; Armstrong, Alexandra E; Evans, Sanford; Mild, Rita M; Langdon, Christopher J; Joens, Lynn A

2011-08-02

Salmonella enterica is the leading cause of laboratory-confirmed foodborne illness in the United States and raw shellfish consumption is a commonly implicated source of gastrointestinal pathogens. A 2005 epidemiological study done in our laboratory by Brands et al., showed that oysters in the United States are contaminated with Salmonella, and in particular, a specific strain of the Newport serovar. This work sought to further investigate the host-microbe interactions between Salmonella Newport and oysters. A procedure was developed to reliably and repeatedly expose oysters to enteric bacteria and quantify the subsequent levels of bacterial survival. The results show that 10 days after an exposure to Salmonella Newport, an average concentration of 3.7 × 10(3)CFU/g remains within the oyster meat, and even after 60 days there still can be more than 10(2)CFU/g remaining. However, the strain of Newport that predominated in the market survey done by Brands et al. does not survive within oysters or the estuarine environment better than any other strains of Salmonella we tested. Using this same methodology, we compared Salmonella Newport's ability to survive within oysters to a non-pathogenic strain of E. coli and found that after 10 days the concentration of Salmonella was 200-times greater than that of E. coli. We also compared those same strains of Salmonella and E. coli in a depuration process to determine if a constant 120 L/h flux of clean seawater could significantly reduce the concentration of bacteria within oysters and found that after 3 days the oysters retained over 10(4)CFU/g of Salmonella while the oysters exposed to the non-pathogenic strain of E. coli contained 100-times less bacteria. Overall, the results of this study demonstrate that any of the clinically relevant serovars of Salmonella can survive within oysters for significant periods of time after just one exposure event. Based on the drastic differences in survivability between Salmonella and a non-pathogenic relative, the results of this study also suggest that unidentified virulence factors may play a role in Salmonella's interactions with oysters. Published by Elsevier B.V.

The density and spatial arrangement of the invasive oyster Crassostrea gigas determines its impact on settlement of native oyster larvae

PubMed Central

Wilkie, Emma M; Bishop, Melanie J; O'Connor, Wayne A

2013-01-01

Understanding how the density and spatial arrangement of invaders is critical to developing management strategies of pest species. The Pacific oyster, Crassostrea gigas, has been translocated around the world for aquaculture and in many instances has established wild populations. Relative to other species of bivalve, it displays rapid suspension feeding, which may cause mortality of pelagic invertebrate larvae. We compared the effect on settlement of Sydney rock oyster, Saccostrea glomerata, larvae of manipulating the spatial arrangement and density of native S. glomerata, and non-native C. gigas. We hypothesized that while manipulations of dead oysters would reveal the same positive relationship between attachment surface area and S. glomerata settlement between the two species, manipulations of live oysters would reveal differing density-dependent effects between the native and non-native oyster. In the field, whether oysters were live or dead, more larvae settled on C. gigas than S. glomerata when substrate was arranged in monospecific clumps. When, however, the two species were interspersed, there were no differences in larval settlement between them. By contrast, in aquaria simulating a higher effective oyster density, more larvae settled on live S. glomerata than C. gigas. When C. gigas was prevented from suspension feeding, settlement of larvae on C. gigas was enhanced. By contrast, settlement was similar between the two species when dead. While the presently low densities of the invasive oyster C. gigas may enhance S. glomerata larval settlement in east Australian estuaries, future increases in densities could produce negative impacts on native oyster settlement. Synthesis and applications: Our study has shown that both the spatial arrangement and density of invaders can influence their impact. Hence, management strategies aimed at preventing invasive populations reaching damaging sizes should not only consider the threshold density at which impacts exceed some acceptable limit, but also how patch formation modifies this. PMID:24455120

Enhanced Detection of Vibrio Cholerae in Oyster Homogenate Based on Centrifugal Removal of Inhibitory Agents

NASA Technical Reports Server (NTRS)

Alexander, Donita; DePaola, Angelo; Young, Ronald B.

1998-01-01

The disease cholera, caused by Vibrio cholerae, has been associated with consumption of contaminated seafood, including raw oysters. Detection of V. cholerae in foods typically involves blending the oysters, diluting the homogenate in alkaline peptone water (APW), overnight enrichment, and isolation on selective agar. Unfortunately, the oyster homogenate must be diluted to large volumes because lower dilutions inhibit the growth of V. cholerae. The goals of this study were to develop an alternative to large dilutions and to evaluate the basis for the inhibition observed in lower dilutions of oyster homogenates. Centrifugation of oyster homogenates at 10,000 x g for 15 min, followed by enrichment of the resulting pellet in APW, was found to eliminate the inhibition of V. cholerae growth. Inhibition appears not to be due to competing microflora but to a component(s) released when V. cholerae grows in the presence of oyster homogenate. The inhibitory component(s) kills the V. cholerae after the cell concentration reaches > 10(exp 8) cells/mL, rather than initially preventing their growth. The pH also declines from 8.0 to 5.5 during this period; however, the pH decline by itself appears not to cause V. cholerae death. Seven strains of V. cholerae (01 and non-01) and two strains of V. vulnificus were susceptible to the inhibitory agent(s). However, other Vibrio and non-Vibrio species tested were not inhibited by the oyster homogenates. Based on digestion of oyster homogenates with pronase, trypsin and lipase, the inhibitory reaction involves a protein(s). In a preliminary trial with oyster homogenate seeded with 1 cfu/g of V. cholerae, the modified centrifugation technique detected a slightly higher percentage of samples at a 1:10 dilution than the standard FDA Bacteriological Analytical Method (BAM) detected in uncentrifuged oyster homogenate at a 1:100 dilution. V. cholerae in seeded samples could also be detected more frequently by the modified centrifugation method than by PCR at a 1:10 dilution.

Satellite remote sensing reveals a positive impact of living oyster reefs on microalgal biofilm development

NASA Astrophysics Data System (ADS)

Echappé, Caroline; Gernez, Pierre; Méléder, Vona; Jesus, Bruno; Cognie, Bruno; Decottignies, Priscilla; Sabbe, Koen; Barillé, Laurent

2018-02-01

Satellite remote sensing (RS) is routinely used for the large-scale monitoring of microphytobenthos (MPB) biomass in intertidal mudflats and has greatly improved our knowledge of MPB spatio-temporal variability and its potential drivers. Processes operating on smaller scales however, such as the impact of benthic macrofauna on MPB development, to date remain underinvestigated. In this study, we analysed the influence of wild Crassostrea gigas oyster reefs on MPB biofilm development using multispectral RS. A 30-year time series (1985-2015) combining high-resolution (30 m) Landsat and SPOT data was built in order to explore the relationship between C. gigas reefs and MPB spatial distribution and seasonal dynamics, using the normalized difference vegetation index (NDVI). Emphasis was placed on the analysis of a before-after control-impact (BACI) experiment designed to assess the effect of oyster killing on the surrounding MPB biofilms. Our RS data reveal that the presence of oyster reefs positively affects MPB biofilm development. Analysis of the historical time series first showed the presence of persistent, highly concentrated MPB patches around oyster reefs. This observation was supported by the BACI experiment which showed that killing the oysters (while leaving the physical reef structure, i.e. oyster shells, intact) negatively affected both MPB biofilm biomass and spatial stability around the reef. As such, our results are consistent with the hypothesis of nutrient input as an explanation for the MPB growth-promoting effect of oysters, whereby organic and inorganic matter released through oyster excretion and biodeposition stimulates MPB biomass accumulation. MPB also showed marked seasonal variations in biomass and patch shape, size and degree of aggregation around the oyster reefs. Seasonal variations in biomass, with higher NDVI during spring and autumn, were consistent with those observed on broader scales in other European mudflats. Our study provides the first multi-sensor RS satellite evidence of the promoting and structuring effect of oyster reefs on MPB biofilms.

Environmental geochemistry at Red Mountain, an unmined volcanogenic massive sulphide deposit in the Bonnifield district, Alaska Range, east-central Alaska

USGS Publications Warehouse

Eppinger, R.G.; Briggs, P.H.; Dusel-Bacon, C.; Giles, S.A.; Gough, L.P.; Hammarstrom, J.M.; Hubbard, B.E.

2007-01-01

The unmined, pyrite-rich Red Mountain (Dry Creek) deposit displays a remarkable environmental footprint of natural acid generation, high metal and exceedingly high rate earth element (REE) concentrations in surface waters. The volcanogenic massive sulphide deposit exhibits well-constrained examples of acid-generating, metal-leaching, metal-precipitation and self-mitigation (via co-precipitation, dilution and neutralization) processes that occur in an undisturbed natural setting, a rare occurrence in North America. Oxidative dissolution of pyrite and associated secondary reactions under near-surface oxidizing conditions are the primary causes for the acid generation and metal leaching. The deposit is hosted in Devonian to Mississippian felsic metavolcanic rocks of the Mystic Creek Member of the Totatlanika Schist. Water samples with the lowest pH (many below 3.5), highest specific conductance (commonly >2500 ??S/cm) and highest major- and trace-element concentrations are from springs and streams within the quartz-sericite-pyrite alteration zone. Aluminum, Cd, Co, Cu, Fe, Mn, Ni, Pb, Y, Zn and, particularly, the REEs are found in high concentrations, ranging across four orders of magnitude. Waters collected upstream from the alteration zone have near-neutral pH, lower specific conductance (370 to 830 ??S/cm), lower metal concentrations and measurable alkalinities. Water samples collected downstream of the alteration zone have pH and metal concentrations intermediate between these two extremes. Stream sediments are anomalous in Zn, Pb, S, Fe, Cu, As, Co, Sb and Cd relative to local and regional background abundances. Red Mountain Creek and its tributaries do not, and probably never have, supported significant aquatic life. ?? 2007 AAG/ Geological Society of London.

Gravity and Aeromagnetic Gradients within the Yukon-Tanana Upland, Black Mountain Tectonic Zone, Big Delta Quadrangle, east-central Alaska

USGS Publications Warehouse

Saltus, R.W.; Day, W.C.

2006-01-01

The Yukon-Tanana Upland is a complex composite assemblage of variably metamorphosed crystalline rocks with strong North American affinities. At the broadest scale, the Upland has a relatively neutral magnetic character. More detailed examination, however, reveals a fundamental northeast-southwest-trending magnetic gradient, representing a 20-nT step (as measured at a flight height of 300 m) with higher values to the northwest, that extends from the Denali fault to the Tintina fault and bisects the Upland. This newly recognized geophysical gradient is parallel to, but about 100 km east of, the Shaw Creek fault. The Shaw Creek fault is mapped as a major left-lateral, strike-slip fault, but does not coincide with a geophysical boundary. A gravity gradient coincides loosely with the southwestern half of the magnetic gradient. This gravity gradient is the eastern boundary of a 30-mGal residual gravity high that occupies much of the western and central portions of the Big Delta quadrangle. The adjacent lower gravity values to the east correlate, at least in part, with mapped post-metamorphic granitic rocks. Ground-based gravity and physical property measurements were made in the southeastern- most section of the Big Delta quadrangle in 2004 to investigate these geophysical features. Preliminary geophysical models suggest that the magnetic boundary is deeper and more fundamental than the gravity boundary. The two geophysical boundaries coincide in and around the Tibbs Creek region, an area of interest to mineral exploration. A newly mapped tectonic zone (the Black Mountain tectonic zone of O'Neill and others, 2005) correlates with the coincident geophysical boundaries.

Geologic map of the Sauk River 30- by 60-minute quadrangle, Washington

USGS Publications Warehouse

Tabor, R.W.; Booth, D.B.; Vance, J.A.; Ford, A.B.

2002-01-01

Summary -- The north-south-trending regionally significant Straight Creek Fault roughly bisects the Sauk River quadrangle and defines the fundamental geologic framework of it. Within the quadrangle, the Fault mostly separates low-grade metamorphic rocks on the west from medium- to high-grade metamorphic rocks of the Cascade metamorphic core. On the west, the Helena-Haystack melange and roughly coincident Darrington-Devils Mountain Fault Zone separate the western and eastern melange belts to the southwest from the Easton Metamorphic Suite, the Bell Pass melange, and rocks of the Chilliwack Group, to the northeast. The tectonic melanges have mostly Mesozoic marine components whereas the Chilliwack is mostly composed of Late Paleozoic arc rocks. Unconformably overlying the melanges and associated rocks are Eocene volcanic and sedimentary rocks, mostly infaulted along the Darrington-Devils Mountain Fault Zone. These younger rocks and a few small Eocene granitic plutons represent an extensional tectonic episode. East of the Straight Creek Fault, medium to high-grade regional metamorphic rocks of the Nason, Chelan Mountains, and Swakane terranes have been intruded by deep seated, Late Cretaceous granodioritic to tonalitic plutons, mostly now orthogneisses. Unmetamorphosed mostly tonalitic intrusions on both sides of the Straight Creek fault range from 35 to 4 million years old and represent the roots of volcanoes of the Cascade Magmatic Arc. Arc volcanic rocks are sparsely preserved east of the Straight Creek fault, but dormant Glacier Peak volcano on the eastern margin of the quadrangle is the youngest member of the Arc. Deposits of the Canadian Ice Sheet are well represented on the west side of the quadrangle, whereas alpine glacial deposits are common to the east. Roughly 5000 years ago lahars from Glacier Peak flowed westward filling major valleys across the quadrangle.

Culture site dependence on pearl size realization in Pinctada margaritifera in relation to recipient oyster growth and mantle graft biomineralization gene expression using the same donor phenotype

NASA Astrophysics Data System (ADS)

Le Pabic, Lore; Parrad, Sophie; Sham Koua, Manaarii; Nakasai, Seiji; Saulnier, Denis; Devaux, Dominique; Ky, Chin-Long

2016-12-01

Size is the most important and valuable quality of the cultured black-lip pearl, Pinctada margaritifera. As this pearl aquaculture is carried out at numerous grow-out sites, this study analyzes the environmental influence on pearl size parameters (nacre weight and thickness) in relation to the recipient oyster biometric parameters (shell thickness, height, width, and oyster weight) at harvest time. Toward this end, an experimental graft was designed by using a homogeneous donor oyster phenotype. The recipient oysters were randomly and equally transferred and reared in five commercial and contrasting grow-out locations. Overall inter-site comparisons revealed that the cultured pearl size (N = 2168) and the biometric parameters of the recipient oysters were highest for sites with warmer temperatures with low seasonal variation in comparison to the southern latitude sites. These results were supported by positive correlations between pearl nacre thickness and recipient oyster shell thickness, height, and width. In parallel, the biomineralization potential of the mantle graft was screened through four genes encoding aragonite (Pif 177, MSI60) and calcite (shematrin 9, aspein). As the gene expression levels were the same among all the donor oysters, this finding demonstrates that: 1) the pearl sac that originated from the mantle graft was not isolated from environmental variations during the culture period and 2) the phenotypic expressions of the two biomineralizing tissues in the recipient oyster were consistent (shell and pearl). In the near future, this knowledge will be helpful at the production sites of genetically selected donor oyster lines for growth produced in hatchery systems.

Mortalities of Eastern and Pacific oyster Larvae caused by the pathogens Vibrio coralliilyticus and Vibrio tubiashii.

PubMed

Richards, Gary P; Watson, Michael A; Needleman, David S; Church, Karlee M; Häse, Claudia C

2015-01-01

Vibrio tubiashii is reported to be a bacterial pathogen of larval Eastern oysters (Crassostrea virginica) and Pacific oysters (Crassostrea gigas) and has been associated with major hatchery crashes, causing shortages in seed oysters for commercial shellfish producers. Another bacterium, Vibrio coralliilyticus, a well-known coral pathogen, has recently been shown to elicit mortality in fish and shellfish. Several strains of V. coralliilyticus, such as ATCC 19105 and Pacific isolates RE22 and RE98, were misidentified as V. tubiashii until recently. We compared the mortalities caused by two V. tubiashii and four V. coralliilyticus strains in Eastern and Pacific oyster larvae. The 50% lethal dose (LD50) of V. coralliilyticus in Eastern oysters (defined here as the dose required to kill 50% of the population in 6 days) ranged from 1.1 × 10(4) to 3.0 × 10(4) CFU/ml seawater; strains RE98 and RE22 were the most virulent. This study shows that V. coralliilyticus causes mortality in Eastern oyster larvae. Results for Pacific oysters were similar, with LD50s between 1.2 × 10(4) and 4.0 × 10(4) CFU/ml. Vibrio tubiashii ATCC 19106 and ATCC 19109 were highly infectious toward Eastern oyster larvae but were essentially nonpathogenic toward healthy Pacific oyster larvae at dosages of ≥1.1 × 10(4) CFU/ml. These data, coupled with the fact that several isolates originally thought to be V. tubiashii are actually V. coralliilyticus, suggest that V. coralliilyticus has been a more significant pathogen for larval bivalve shellfish than V. tubiashii, particularly on the U.S. West Coast, contributing to substantial hatchery-associated morbidity and mortality in recent years. Copyright © 2015, American Society for Microbiology. All Rights Reserved.

The impact of suspended oyster farming on nitrogen cycling and nitrous oxide production in a sub-tropical Australian estuary

NASA Astrophysics Data System (ADS)

Erler, Dirk V.; Welsh, David T.; Bennet, William W.; Meziane, Tarik; Hubas, Cédric; Nizzoli, Daniele; Ferguson, Angus J. P.

2017-06-01

In this study we quantified nitrate (NO3-) reduction (denitrification, anammox and DNRA) and N2O production in sediments and epibiont communities associated with Sydney Rock Oyster (Saccostrea glomerata) farming. In sediments beneath an active suspended oyster farm, DNRA accounted for 98% of NO3- reduction with rates of up to 169 ± 45 μmol N m-2 h-1. Much of this DNRA was fuelled by NO3- derived from nitrification. Reference sediments had significantly lower DNRA rates of 83.8 ± 28.2 μmol N m-2 h-1, however this constituted 96% of the sites total NO3- reduction. Fatty acid analysis showed that sediment organic matter was more labile in the oyster impacted sediments, facilitating subtle shifts in sediment oxygen demand which increased the Fe2+ availability with respect to the reference sediments. The difference in DNRA rate between the sites was attributed to autotrophic oxidation of soluble Fe2+ in sediments underlying the oyster cultures. DNRA was absent in the oyster shell epibiont communities and rates of anammox and denitrification were lower than in the sediments. Production of NH4+ from the oysters and their associated epibionts was larger than DNRA and reached a rate of 206.2 μmol N m-2 h-1. Nitrous oxide production rates were generally low compared to other aquaculture systems and the net flux of N2O for the combined oyster cultivation system (i.e. sediments plus epibionts) was negative, i.e. there was N2O consumption in the sediments beneath the oysters. Overall, subtropical suspended oyster farming systems favour inorganic N retention over N loss.

Drought Increases Consumer Pressure on Oyster Reefs in Florida, USA

PubMed Central

Garland, Hanna G.; Kimbro, David L.

2015-01-01

Coastal economies and ecosystems have historically depended on oyster reefs, but this habitat has declined globally by 85% because of anthropogenic activities. In a Florida estuary, we investigated the cause of newly reported losses of oysters. We found that the oyster reefs have deteriorated from north to south and that this deterioration was positively correlated with the abundance of carnivorous conchs and water salinity. In experiments across these gradients, oysters survived regardless of salinity if conchs were excluded. After determining that conchs were the proximal cause of oyster loss, we tested whether elevated water salinity was linked to conch abundance either by increasing conch growth and survivorship or by decreasing the abundance of a predator of conchs. In field experiments across a salinity gradient, we failed to detect spatial variation in predation on conchs or in conch growth and survivorship. A laboratory experiment, however, demonstrated the role of salinity by showing that conch larvae failed to survive at low salinities. Because this estuary’s salinity increased in 2006 in response to reduced inputs of freshwater, we concluded that the ultimate cause of oyster decline was an increase in salinity. According to records from 2002 to 2012, oyster harvests have remained steady in the northernmost estuaries of this ecoregion (characterized by high reef biomass, low salinity, and low conch abundance) but have declined in the southernmost estuaries (characterized by lower reef biomass, increases in salinity, and increases in conch abundance). Oyster conservation in this ecoregion, which is probably one of the few that still support viable oyster populations, may be undermined by drought-induced increases in salinity causing an increased abundance of carnivorous conchs. PMID:26275296

Limited impact of an invasive oyster on intertidal assemblage structure and biodiversity: the importance of environmental context and functional equivalency with native species.

PubMed

Zwerschke, Nadescha; Hollyman, Philip R; Wild, Romy; Strigner, Robin; Turner, John R; King, Jonathan W

2018-01-01

Impacts of invasive species are context dependent and linked to the ecosystem they occur within. To broaden the understanding of the impact of a globally widespread invasive oyster, Crassostrea ( Magallana ) gigas, intertidal surveys were carried out at 15 different sites in Europe. The impact of C. gigas on macro- (taxa surrounding oyster > 1 cm) and epifaunal (taxa on oyster < 1 cm) benthic communities and α and β-diversity was assessed and compared to those associated with native ecosystem engineers, including the flat oyster Ostrea edulis . Whilst the effect of C. gigas on benthic community structures was dependent on habitat type, epifaunal communities associated with low densities of O. edulis and C. gigas did not differ and changes in benthic assemblage structure owing to the abundance of C. gigas were therefore attributed to the presence of oyster shells. Macrofaunal α-diversity increased with C. gigas cover in muddy habitats, while epifaunal α-diversity decreased at greater oyster densities. Macrofaunal β-diversity was greatest at low densities of C. gigas ; however, it did not differ between samples without and increased densities of oysters. In contrast, epifaunal β-diversity decreased with increasing oyster cover. Different environmental contexts enabled more independent predictions of the effect of C. gigas on native communities. These were found to be low and more importantly not differing from O. edulis . This indicates that, at low densities, C. gigas may be functionally equivalent to the declining native oyster in terms of biodiversity facilitation and aid in re-establishing benthic communities on shores where O. edulis has become extinct.

Contrasting impacts of ocean acidification and warming on the molecular responses of CO2-resilient oysters.

PubMed

Goncalves, Priscila; Thompson, Emma L; Raftos, David A

2017-06-02

This study characterises the molecular processes altered by both elevated CO 2 and increasing temperature in oysters. Differences in resilience of marine organisms against the environmental stressors associated with climate change will have significant implications for the sustainability of coastal ecosystems worldwide. Some evidence suggests that climate change resilience can differ between populations within a species. B2 oysters represent a unique genetic resource because of their capacity to better withstand the impacts of elevated CO 2 at the physiological level, compared to non-selected oysters from the same species (Saccostrea glomerata). Here, we used proteomic and transcriptomic analysis of gill tissue to evaluate whether the differential response of B2 oysters to elevated CO 2 also extends to increased temperature. Substantial and distinctive effects on protein concentrations and gene expression were evident among B2 oysters responding to elevated CO 2 or elevated temperature. The combination of both stressors also altered oyster gill proteomes and gene expression. However, the impacts of elevated CO 2 and temperature were not additive or synergistic, and may be antagonistic. The data suggest that the simultaneous exposure of CO 2 -resilient oysters to near-future projected ocean pH and temperature results in complex changes in molecular processes in order to prevent stress-induced cellular damage. The differential response of B2 oysters to the combined stressors also indicates that the addition of thermal stress may impair the resilience of these oysters to decreased pH. Overall, this study reveals the intracellular mechanisms that might enable marine calcifiers to endure the emergent, adverse seawater conditions resulting from climate change.

The Antimicrobial Defense of the Pacific Oyster, Crassostrea gigas. How Diversity may Compensate for Scarcity in the Regulation of Resident/Pathogenic Microflora

PubMed Central

Schmitt, Paulina; Rosa, Rafael Diego; Duperthuy, Marylise; de Lorgeril, Julien; Bachère, Evelyne; Destoumieux-Garzón, Delphine

2012-01-01

Healthy oysters are inhabited by abundant microbial communities that vary with environmental conditions and coexist with immunocompetent cells in the circulatory system. In Crassostrea gigas oysters, the antimicrobial response, which is believed to control pathogens and commensals, relies on potent oxygen-dependent reactions and on antimicrobial peptides/proteins (AMPs) produced at low concentrations by epithelial cells and/or circulating hemocytes. In non-diseased oysters, hemocytes express basal levels of defensins (Cg-Defs) and proline-rich peptides (Cg-Prps). When the bacterial load dramatically increases in oyster tissues, both AMP families are driven to sites of infection by major hemocyte movements, together with bactericidal permeability/increasing proteins (Cg-BPIs) and given forms of big defensins (Cg-BigDef), whose expression in hemocytes is induced by infection. Co-localization of AMPs at sites of infection could be determinant in limiting invasion as synergies take place between peptide families, a phenomenon which is potentiated by the considerable diversity of AMP sequences. Besides, diversity occurs at the level of oyster AMP mechanisms of action, which range from membrane lysis for Cg-BPI to inhibition of metabolic pathways for Cg-Defs. The combination of such different mechanisms of action may account for the synergistic activities observed and compensate for the low peptide concentrations in C. gigas cells and tissues. To overcome the oyster antimicrobial response, oyster pathogens have developed subtle mechanisms of resistance and evasion. Thus, some Vibrio strains pathogenic for oysters are equipped with AMP-sensing systems that trigger resistance. More generally, the known oyster pathogenic vibrios have evolved strategies to evade intracellular killing through phagocytosis and the associated oxidative burst. PMID:22783227

Molecular analysis of an oyster-related norovirus outbreak.

PubMed

Nenonen, Nancy P; Hannoun, Charles; Olsson, Margareta B; Bergström, Tomas

2009-06-01

Contaminated raw oysters were implicated in a severe outbreak of norovirus (NoV) gastroenteritis affecting 30 restaurant guests. To define the outbreak source by using molecular methods to characterize NoV strains detected in patient and oyster samples. Molecular epidemiological studies based on nucleotide sequencing and phylogenetic analyses of patient and oyster NoV strains, and comparison to background dataset. NoV genotype (G) I.1 was detected in the one patient stool analyzed by in-house TaqMan real time RT-PCR and classical nested RT-PCR targeting NoV RNA-dependent polymerase (RdRp, 285 nt), and by nested RT-PCR targeting RdRp-capsid-poly(A)-3' (3085 nt). Patient strain showed >or=99% similarity (285 nt) with three NoV strains detected in two of five oysters examined by classical nested RT-PCR (RdRp). A third oyster tested positive for NoV GII.3. Phylogenetic analysis showed clustering of patient and oyster strains related to this outbreak with GI.1 strains from previous local outbreaks, and mussel studies. Sequence data revealed >or=99% similarity (285 nt) between NoV GI.1 strains detected in patient stool and suspect oysters, linking the contaminated oysters to the outbreak. Identification of human NoV GI and GII strains in oysters indicated contamination of human fecal origin, presumably from inappropriate storage in the harbor. Comparative long-fragment analysis of the patient strain revealed 99% similarity (3085 nt) with NoV GI.1 strains detected in previous outbreaks and environmental mussel studies from West Sweden, 87% with M87661 (Norwalk68) and 96% with L23828 (SRSV-KY-89/89/J). These results indicated considerable genomic stability of NoV GI.1 strains over time.

Development and validation of a predictive model for the growth of Vibrio parahaemolyticus in post-harvest shellstock oysters.

PubMed

Parveen, Salina; DaSilva, Ligia; DePaola, Angelo; Bowers, John; White, Chanelle; Munasinghe, Kumudini Apsara; Brohawn, Kathy; Mudoh, Meshack; Tamplin, Mark

2013-01-15

Information is limited about the growth and survival of naturally-occurring Vibrio parahaemolyticus in live oysters under commercially relevant storage conditions harvested from different regions and in different oyster species. This study produced a predictive model for the growth of naturally-occurring V. parahaemolyticus in live Eastern oysters (Crassostrea virginica) harvested from the Chesapeake Bay, MD, USA and stored at 5-30 °C until oysters gapped. The model was validated with model-independent data collected from Eastern oysters harvested from the Chesapeake Bay and Mobile Bay, AL, USA and Asian (C. ariakensis) oysters from the Chesapeake Bay, VA, USA. The effect of harvest season, region and water condition on growth rate (GR) was also tested. At each time interval, two samples consisting of six oysters each were analyzed by a direct-plating method for total V. parahaemolyticus. The Baranyi D-model was fitted to the total V. parahaemolyticus growth and survival data. A secondary model was produced using the square root model. V. parahaemolyticus slowly inactivated at 5 and 10 °C with average rates of -0.002 and -0.001 log cfu/h, respectively. The average GRs at 15, 20, 25, and 30 °C were 0.038, 0.082, 0.228, and 0.219 log cfu/h, respectively. The bias and accuracy factors of the secondary model for model-independent data were 1.36 and 1.46 for Eastern oysters from Mobile Bay and the Chesapeake Bay, respectively. V. parahaemolyticus GRs were markedly lower in Asian oysters. Harvest temperature, salinity, region and season had no effect on GRs. The observed GRs were less than those predicted by the U.S. Food and Drug Administration's V. parahaemolyticus quantitative risk assessment. Copyright © 2012 Elsevier B.V. All rights reserved.

Development and validation of a predictive model for the growth of Vibrio vulnificus in postharvest shellstock oysters.

PubMed

DaSilva, Ligia; Parveen, Salina; DePaola, Angelo; Bowers, John; Brohawn, Kathy; Tamplin, Mark L

2012-03-01

Postharvest growth of Vibrio vulnificus in oysters can increase risk of human infection. Unfortunately, limited information is available regarding V. vulnificus growth and survival patterns over a wide range of storage temperatures in oysters harvested from different estuaries and in different oyster species. In this study, we developed a predictive model for V. vulnificus growth in Eastern oysters (Crassostrea virginica) harvested from Chesapeake Bay, MD, over a temperature range of 5 to 30°C and then validated the model against V. vulnificus growth rates (GRs) in Eastern and Asian oysters (Crassostrea ariakensis) harvested from Mobile Bay, AL, and Chesapeake Bay, VA, respectively. In the model development studies, V. vulnificus was slowly inactivated at 5 and 10°C with average GRs of -0.0045 and -0.0043 log most probable number (MPN)/h, respectively. Estimated average growth rates at 15, 20, 25, and 30°C were 0.022, 0.042, 0.087, and 0.093 log MPN/h, respectively. With respect to Eastern oysters, bias (B(f)) and accuracy (A(f)) factors for model-dependent and -independent data were 1.02 and 1.25 and 1.67 and 1.98, respectively. For Asian oysters, B(f) and A(f) were 0.29 and 3.40. Residual variations in growth rate about the fitted model were not explained by season, region, water temperature, or salinity at harvest. Growth rate estimates for Chesapeake Bay and Mobile Bay oysters stored at 25 and 30°C showed relatively high variability and were lower than Food and Agricultural Organization (FAO)/WHO V. vulnificus quantitative risk assessment model predictions. The model provides an improved tool for designing and implementing food safety plans that minimize the risk associated with V. vulnificus in oysters.

Groundwater and surface-water interaction, water quality, and processes affecting loads of dissolved solids, selenium, and uranium in Fountain Creek near Pueblo, Colorado, 2012–2014

USGS Publications Warehouse

Arnold, L. Rick; Ortiz, Roderick F.; Brown, Christopher R.; Watts, Kenneth R.

2016-11-28

In 2012, the U.S. Geological Survey, in cooperation with the Arkansas River Basin Regional Resource Planning Group, initiated a study of groundwater and surface-water interaction, water quality, and loading of dissolved solids, selenium, and uranium to Fountain Creek near Pueblo, Colorado, to improve understanding of sources and processes affecting loading of these constituents to streams in the Arkansas River Basin. Fourteen monitoring wells were installed in a series of three transects across Fountain Creek near Pueblo, and temporary streamgages were established at each transect to facilitate data collection for the study. Groundwater and surface-water interaction was characterized by using hydrogeologic mapping, groundwater and stream-surface levels, groundwater and stream temperatures, vertical hydraulic-head gradients and ratios of oxygen and hydrogen isotopes in the hyporheic zone, and streamflow mass-balance measurements. Water quality was characterized by collecting periodic samples from groundwater, surface water, and the hyporheic zone for analysis of dissolved solids, selenium, uranium, and other selected constituents and by evaluating the oxidation-reduction condition for each groundwater sample under different hydrologic conditions throughout the study period. Groundwater loads to Fountain Creek and in-stream loads were computed for the study area, and processes affecting loads of dissolved solids, selenium, and uranium were evaluated on the basis of geology, geochemical conditions, land and water use, and evapoconcentration.During the study period, the groundwater-flow system generally contributed flow to Fountain Creek and its hyporheic zone (as a single system) except for the reach between the north and middle transects. However, the direction of flow between the stream, the hyporheic zone, and the near-stream aquifer was variable in response to streamflow and stage. During periods of low streamflow, Fountain Creek generally gained flow from groundwater. However, during periods of high streamflow, the hydraulic gradient between groundwater and the stream temporarily reversed, causing the stream to lose flow to groundwater.Concentrations of dissolved solids, selenium, and uranium in groundwater generally had greater spatial variability than surface water or hyporheic-zone samples, and constituent concentrations in groundwater generally were greater than in surface water. Constituent concentrations in the hyporheic zone typically were similar to or intermediate between concentrations in groundwater and surface water. Concentrations of dissolved solids, selenium, uranium, and other constituents in groundwater samples collected from wells located on the east side of the north monitoring well transect were substantially greater than for other groundwater, surface-water, and hyporheic-zone samples. With one exception, groundwater samples collected from wells on the east side of the north transect exhibited oxic to mixed (oxic-anoxic) conditions, whereas most other groundwater samples exhibited anoxic to suboxic conditions. Concentrations of dissolved solids, selenium, and uranium in surface water generally increased in a downstream direction along Fountain Creek from the north transect to the south transect and exhibited an inverse relation to streamflow with highest concentration occurring during periods of low streamflow and lowest concentrations occurring during periods of high streamflow.Groundwater loads of dissolved solids, selenium, and uranium to Fountain Creek were small because of the small amount of groundwater flowing to the stream under typical low-streamflow conditions. In-stream loads of dissolved solids, selenium, and uranium in Fountain Creek varied by date, primarily in relation to streamflow at each transect and were much larger than computed constituent loads from groundwater. In-stream loads generally decreased with decreases in streamflow and increased as streamflow increased. In-stream loads of dissolved solids and selenium increased between the north and middle transects but generally decreased between the middle and south transects. By contrast, uranium loads generally decreased between the north and middle transects but increased between the middle and south transects. In-stream load differences between transects appear primarily to be related to differences in streamflow. However, because groundwater typically flows to Fountain Creek under low-flow conditions, and groundwater has greater concentrations of dissolved solids, selenium, and uranium than surface water in Fountain Creek, increases in loads between transects likely are affected by inflow of groundwater to the stream, which can account for a substantial proportion of the in-stream load difference between transects. When loads decreased between transects, the primary cause likely was decreased streamflow as a result of losses to groundwater and flow through the hyporheic zone. However, localized groundwater inflow likely attenuated the magnitude by which the in-stream loads decreased.The combination of localized soluble geologic sources and oxic conditions likely is the primary reason for the occurrence of high concentrations of dissolved solids, selenium, and uranium in groundwater on the east side of the north monitoring well transect. To evaluate conditions potentially responsible for differences in water quality and redox conditions, physical characteristics such as depth to water, saturated thickness, screen depth below the water table, screen height above bedrock, and aquifer hydraulic conductivity were compared by using Wilcoxon rank-sum tests. Results indicated no significant difference between depth to water, screen height above bedrock, and hydraulic conductivity for groundwater samples collected from wells on the east side of the north transect and groundwater samples from all other wells. However, saturated thickness and screen depth below the water table both were significantly smaller for groundwater samples collected from wells on the east side of the north transect than for groundwater samples from other wells, indicating that these characteristics might be related to the elevated constituent concentrations found at that location. Similarly, saturated thickness and screen depth below the water table were significantly smaller for groundwater samples under oxic or mixed (oxic-anoxic) conditions than for those under anoxic to suboxic conditions.The greater constituent concentrations at wells on the east side of the north transect also could, in part, be related to groundwater discharge from an unnamed alluvial drainage located directly upgradient from that location. Although the quantity and quality of water discharging from the drainage is not known, the drainage appears to collect water from a residential area located upgradient to the east of the wells, and groundwater could become concentrated in nitrate and other dissolved constituents before flowing through the drainage. High levels of nitrate, whether from anthropogenic or natural geologic sources, could promote more soluble forms of selenium and other constituents by affecting the redox condition of groundwater. Whether oxic conditions at wells on the east side of the north transect are the result of physical characteristics or of groundwater inflow from the alluvial drainage, the oxic conditions appear to cause increased dissolution of minerals from the shallow shale bedrock at that location. Because ratios of hydrogen and oxygen isotopes indicate evaporation likely has not had a substantial effect on groundwater, constituent concentrations at that location likely are not the result of evapoconcentration. 

Water resources and potential effects of ground-water development in Maggie, Marys, and Susie Creek basins, Elko and Eureka counties, Nevada

USGS Publications Warehouse

Plume, R.W.

1995-01-01

The basins of Maggie, Marys, and Susie Creeks in northeastern Nevada are along the Carline trend, an area of large, low-grade gold deposits. Pumping of ground water, mostly for pit dewatering at one of the mines, will reach maximum rates of about 70,000 acre-ft/yr (acre-feet per year) around the year 2000. This pumping is expected to affect ground-water levels, streamflow, and possibly the flow of Carlin spring, which is the water supply for the town of Carlin, Nev. Ground water in the upper Maggie Creek Basin moves from recharge areas in mountain ranges toward the basin axis and discharges as evapotranspiration and as inflow to the stream channel. Ground water in the lower Maggie, Marys, and Susie Creek Basins moves southward from recharge areas in mountain ranges and along the channel of lower Maggie Creek to the discharge area along the Humboldt River. Ground-water underflow between basins is through permeable bedrock of Schroeder Mountain from the upper Maggie Creek Basin to the lower Maggie Creek Basin and through permeable volcanic rocks from lower Maggie Creek to Carlin spring in the Marys Creek Basin. The only source of water to the combined area of the three basins is an estimated 420,000 acre-ft/yr of precipitation. Water leaves as runoff (38,000 acre-ft/yr) and evapotranspiration of soil moisture and ground water (380,000 acre-ft/yr). A small part of annual precipitation (about 25,000 acre-ft/yr) infiltrates the soil zone and becomes ground-water recharge. This ground water eventually is discharged as evapotranspiration (11,000 acre-ft/yr) and as inflow to the Humboldt River channel and nearby springflow (7,000 acre-ft/yr). Total discharge is estimated to be 18,000 acre-ft/yr.

[Comparison of two nucleic acid extraction methods for norovirus in oysters].

PubMed

Yuan, Qiao; Li, Hui; Deng, Xiaoling; Mo, Yanling; Fang, Ling; Ke, Changwen

2013-04-01

To explore a convenient and effective method for norovirus nucleic acid extraction from oysters suitable for long-term viral surveillance. Two methods, namely method A (glycine washing and polyethylene glycol precipitation of the virus followed by silica gel centrifugal column) and method B (protease K digestion followed by application of paramagnetic silicon) were compared for their performance in norovirus nucleic acid extraction from oysters. Real-time RT-PCR was used to detect norovirus in naturally infected oysters and in oysters with induced infection. The two methods yielded comparable positive detection rates for the samples, but the recovery rate of the virus was higher with method B than with method A. Method B is a more convenient and rapid method for norovirus nucleic acid extraction from oysters and suitable for long-term surveillance of norovirus.

Growth and survival of host pearl oyster Pinctada fucata martensii (Dunker, 1880) treated by different biofouling-clean methods in China

NASA Astrophysics Data System (ADS)

Li, Junhui; Yang, Chuangye; Wang, Qingheng; Du, Xiaodong; Deng, Yuewen

2018-07-01

Pearl oyster Pinctada fucata martensii is an economically important species farmed to produce round nucleated pearl in China. However, pearl oyster shells are commonly exposed to biofouling, which is manually cleaned. This study experimentally evaluates the effects of biofouling cleaning by Siganus fuscescens (Houttuyn, 1782) foraging on growth performance and pearl traits of host pearl oyster P. fucata martensii. Three groups designated as EG1, EG2 and EG3 were set in the experiment. In EG1, biofouling was manually cleaned every 2 weeks and oysters were cultured in natural sea conditions. In EG2, biofouling was cleaned by foraging behavior of S. fuscescens every 2 weeks and oysters were cultured in natural sea conditions. In EG3, oysters were farmed in the net cage where S. fuscescens were stored. The survival rate of EG2 was higher than those of EG1 and EG3 and the daily growth rates of length and weight of shell and the thickness and weight of pearl of EG3 were significantly larger than those of EG1 and EG2. The survival rate, daily growth rates of the length and weight of shell, and thickness and weight of pearl were not significantly different between EG1 and EG2. This study suggested S. fuscescens foraging could evidently improve survival of host pearl oyster, which is promising to improve pearl yield in pearl oyster farms in China.

Radiation resistances and decontamination of common pathogenic bacteria contaminated in white scar oyster ( Crassostrea belcheri) in Thailand

NASA Astrophysics Data System (ADS)

Thupila, Nunticha; Ratana-arporn, Pattama; Wilaipun, Pongtep

2011-07-01

In Thailand, white scar oyster ( Crassostrea belcheri) was ranked for premium quality, being most expensive and of high demand. This oyster is often eaten raw, hence it may pose health hazards to consumers when contaminated with food-borne pathogens. As limited alternative methods are available to sterilize the oyster while preserving the raw characteristic, irradiation may be considered as an effective method for decontamination. In this study, the radiation resistance of pathogenic bacteria commonly contaminating the oyster and the optimum irradiation doses for sterilization of the most radiation resistant bacteria were investigated. The radiation decimal reduction doses ( D10) of Salmonella Weltevreden DMST 33380, Vibrio parahaemolyticus ATCC 17802 and Vibrio vulnificus DMST 5852 were determined in broth culture and inoculated oyster homogenate. The D10 values of S. Weltevreden, V. parahaemolyticus and V. vulnificus in broth culture were 0.154, 0.132 and 0.059 kGy, while those of inoculated oyster homogenate were 0.330, 0.159 and 0.140 kGy, respectively. It was found that among the pathogens tested, S. Weltevreden was proved to be the most resistant species. An irradiation dose of 1.5 kGy reduced the counts of 10 5 CFU/g S. Weltevreden inoculated in oyster meat to an undetectable level. The present study indicated that a low-dose irradiation can improve the microbial quality of oyster and further reduce the risks from the food-borne pathogens without adversely affecting the sensory attributes.

Combined effects of temperature acclimation and cadmium exposure on mitochondrial function in eastern oysters Crassostrea virginica gmelin (Bivalvia: Ostreidae).

PubMed

Cherkasov, Anton S; Ringwood, Amy H; Sokolova, Inna M

2006-09-01

Cadmium and temperature have strong impacts on the metabolic physiology of aquatic organisms. To analyze the combined impact of these two stressors on aerobic capacity, effects of Cd exposure (50 microg/L) on mitochondrial function were studied in oysters (Crassostrea virginica) acclimated to 12 and 20 degrees C in winter and to 20 and 28 degrees C in fall. Cadmium exposure had different effects on mitochondrial bioenergetics of oysters depending on the acclimation temperature. In oysters acclimated to 12 degrees C, Cd exposure resulted in elevated intrinsic rates of mitochondrial oxidation, whereas at 28 degrees C, a rapid and pronounced decrease of mitochondrial oxidative capacity was found in Cd-exposed oysters. At the intermediate acclimation temperature (20 degrees C), effects of Cd exposure on intrinsic rates of mitochondrial oxidation were negligible. Degree of coupling significantly decreased in mitochondria from 28 degrees C-acclimated oysters but not in that from 12 degrees C- or 20 degrees C-acclimated oysters. Acclimation at elevated temperatures also increased sensitivity of oyster mitochondria to extramitochondrial Cd. Variation in mitochondrial membrane potential explained 41% of the observed variation in mitochondrial adenosine triphosphate synthesis and proton leak between different acclimation groups of oysters. Temperature-dependent sensitivity of metabolic physiology to Cd has significant implications for toxicity testing and for extrapolation of laboratory studies to field populations of aquatic poikilotherms, indicating the importance of taking into account the thermal regime of the environment.

Growth and yield performance of Pleurotus ostreatus (Jacq. Fr.) Kumm (oyster mushroom) on different substrates.

PubMed

Girmay, Zenebe; Gorems, Weldesemayat; Birhanu, Getachew; Zewdie, Solomon

2016-12-01

Mushroom cultivation is reported as an economically viable bio-technology process for conversion of various lignocellulosic wastes. Given the lack of technology know-how on the cultivation of mushroom, this study was conducted in Wondo Genet College of Forestry and Natural Resource, with the aim to assess the suitability of selected substrates (agricultural and/or forest wastes) for oyster mushroom cultivation. Accordingly, four substrates (cotton seed, paper waste, wheat straw, and sawdust) were tested for their efficacy in oyster mushroom production. Pure culture of oyster mushroom was obtained from Mycology laboratory, Department of Plant Biology and Biodiversity Management, Addis Ababa University. The pure culture was inoculated on potato dextrose agar for spawn preparation. Then, the spawn containing sorghum was inoculated with the fungal culture for the formation of fruiting bodies on the agricultural wastes. The oyster mushroom cultivation was undertaken under aseptic conditions, and the growth and development of mushroom were monitored daily. Results of the study revealed that oyster mushroom can grow on cotton seed, paper waste, sawdust and wheat straw, with varying growth performances. The highest biological and economic yield, as well as the highest percentage of biological efficiency of oyster mushroom was obtained from cotton seed, while the least was from sawdust. The study recommends cotton seed, followed by paper waste as suitable substrates for the cultivation of oyster mushroom. It also suggests that there is a need for further investigation on various aspects of oyster mushroom cultivation in Ethiopia to promote the industry.

Judy Creek: Successful use of offset VSP to find porosity

DOE Office of Scientific and Technical Information (OSTI.GOV)

Campbell, A.; Pearcy, R.; Lee, H.

1994-12-31

In March of 1993, Imperial Oil Resources Ltd. drilled the Judy Creek 14-7-64-10w5 well. The target was porosity on the front of the Judy Creek ``A`` reef. The well encountered poor porosity development. Available surface seismic was of low resolution, so an alternative method was sought to locate better porosity. An offset VSP was acquired, and an anomaly was observed on the P-wave data at a distance of 125 meters form the well. A short radius horizontal radial was drilled from the existing wellbore and encountered porosity development at 125 meters from the well bore. Subsequently, S-wave processing was carriedmore » out. Once again, an anomaly was observed at 125 meters form the well bore. The S-waves had the additional advantage of providing better resolution of the porous zone than the P-wave image.« less

Compositional gradients in large reservoirs of silicic magma as evidenced by ignimbrites versus Taylor Creek Rhyolite lava domes

NASA Astrophysics Data System (ADS)

Duffield, Wendell A.; Ruiz, Joaquin

1992-04-01

The Taylor Creek Rhyolite of southwest New Mexico consists of 20 lava domes and flows that were emplaced during a period of a few thousand years or less in late Oligocene time. Including genetically associated pyroclastic deposits, which are about as voluminous as the lava domes and flows, the Taylor Creek Rhyolite represents roughly 100 km3 of magma erupted from vents distributed throughout an area of several hundred square kilometers. Major-element composition is metaluminous to weakly peraluminous high-silica rhyolite and is nearly constant throughout the lava field. The magma reservoir for the Taylor Creek Rhyolite was vertically zoned in trace elements, 87Sr/86Sr, and phenocryst abundance and size. Mean trace-element concentrations, ranges in concentrations, and element-pair correlations are similar to many subalkaline silicic ignimbrites. However, the polarity of the zonation was opposite that in reservoirs for ignimbrites, for most constituents. For example, compared to the Bishop Tuff, only 87Sr/86Sr and Sc increased upward in both reservoirs. Quite likely, a dominant but nonerupted volume of the magma reservoir for the Taylor Creek Rhyolite was zoned like that for the Bishop Tuff, whereas an erupted, few-hundred-meter-thick cap on the magma body was variably contaminated by roof rocks whose contribution to this part of the magma system moderated relatively extreme trace-element concentrations of uncontaminated Taylor Creek Rhyolite but did not change the sense of correlation for most element pairs. The contaminant probably was a Precambrian rock of broadly granitic composition and with very high 87Sr/86Sr. Although examples apparently are not yet reported in the literature, evidence for a similar thin contaminated cap on reservoirs for large-volume silicic ignimbrites may exist in the bottom few meters of ignimbrites or perhaps only in the pumice fallout that normally immediately precedes ignimbrite emplacement. 87Sr/86Sr in sanidine phenocrysts of the Taylor Creek Rhyolite is higher than that of their host whole rocks. Covariation of this isotope ratio with sanidine abundance and size indicates positive correlations for all three features with decreasing distance to the roof of the magma reservoir. The sanidine probably is more radiogenic than host whole rock because growing phenocrysts partly incorporated Sr from the first partial melt of roof rocks, which contained the highly radiogenic Sr of Precambrian biotite ± hornblende, whereas diffusion was too slow for sanidine to incorporate much of the Sr from subsequently produced less radiogenic partial melt of roof rocks, before eruption quenched the magma system. Disequilibrium between feldspar phenocrysts and host groundmass is fairly common for ignimbrites, and a process of contamination similar to that for the Taylor Creek Rhyolite may help explain some of these situations.

Compositional gradients in large reservoirs of silicic magma as evidenced by ignimbrites versus Taylor Creek Rhyolite lava domes

USGS Publications Warehouse

Duffield, W.A.; Ruiz, J.

1992-01-01

The Taylor Creek Rhyolite of southwest New Mexico consists of 20 lava domes and flows that were emplaced during a period of a few thousand years or less in late Oligocene time. Including genetically associated pyroclastic deposits, which are about as voluminous as the lava domes and flows, the Taylor Creek Rhyolite represents roughly 100 km3 of magma erupted from vents distributed throughout an area of several hundred square kilometers. Major-element composition is metaluminous to weakly peraluminous high-silica rhyolite and is nearly constant throughout the lava field. The magma reservoir for the Taylor Creek Rhyolite was vertically zoned in trace elements, 87Sr/86Sr, and phenocryst abundance and size. Mean trace-element concentrations, ranges in concentrations, and element-pair correlations are similar to many subalkaline silicic ignimbrites. However, the polarity of the zonation was opposite that in reservoirs for ignimbrites, for most constituents. For example, compared to the Bishop Tuff, only 87Sr/86Sr and Sc increased upward in both reservoirs. Quite likely, a dominant but nonerupted volume of the magma reservoir for the Taylor Creek Rhyolite was zoned like that for the Bishop Tuff, whereas an erupted, few-hundred-meter-thick cap on the magma body was variably contaminated by roof rocks whose contribution to this part of the magma system moderated relatively extreme trace-element concentrations of uncontaminated Taylor Creek Rhyolite but did not change the sense of correlation for most element pairs. The contaminant probably was a Precambrian rock of broadly granitic composition and with very high 87Sr/86Sr. Although examples apparently are not yet reported in the literature, evidence for a similar thin contaminated cap on reservoirs for large-volume silicic ignimbrites may exist in the bottom few meters of ignimbrites or perhaps only in the pumice fallout that normally immediately precedes ignimbrite emplacement. 87Sr/86Sr in sanidine phenocrysts of the Taylor Creek Rhyolite is higher than that of their host whole rocks. Covariation of this isotope ratio with sanidine abundance and size indicates positive correlations for all three features with decreasing distance to the roof of the magma reservoir. The sanidine probably is more radiogenic than host whole rock because growing phenocrysts partly incorporated Sr from the first partial melt of roof rocks, which contained the highly radiogenic Sr of Precambrian biotite ?? hornblende, whereas diffusion was too slow for sanidine to incorporate much of the Sr from subsequently produced less radiogenic partial melt of roof rocks, before eruption quenched the magma system. Disequilibrium between feldspar phenocrysts and host groundmass is fairly common for ignimbrites, and a process of contamination similar to that for the Taylor Creek Rhyolite may help explain some of these situations. ?? 1992 Springer-Verlag.

Impacts of upstream drought and water withdrawals on the health and survival of downstream estuarine oyster populations

PubMed Central

Petes, Laura E; Brown, Alicia J; Knight, Carley R

2012-01-01

Increases in the frequency, duration, and severity of regional drought pose major threats to the health and integrity of downstream ecosystems. During 2007–2008, the U.S. southeast experienced one of the most severe droughts on record. Drought and water withdrawals in the upstream watershed led to decreased freshwater input to Apalachicola Bay, Florida, an estuary that is home to a diversity of commercially and ecologically important organisms. This study applied a combination of laboratory experiments and field observations to investigate the effects of reduced freshwater input on Apalachicola oysters. Oysters suffered significant disease-related mortality under high-salinity, drought conditions, particularly during the warm summer months. Mortality was size-specific, with large oysters of commercially harvestable size being more susceptible than small oysters. A potential salinity threshold was revealed between 17 and 25 ppt, where small oysters began to suffer mortality, and large oysters exhibited an increase in mortality. These findings have important implications for watershed management, because upstream freshwater releases could be carefully timed and allocated during stressful periods of the summer to reduce disease-related oyster mortality. Integrated, forward-looking water management is needed, particularly under future scenarios of climate change and human population growth, to sustain the valuable ecosystem services on which humans depend. PMID:22957175

Angiotensin I-Converting Enzyme Inhibitor Derived from Cross-Linked Oyster Protein

PubMed Central

Xie, Cheng-Liang; Kim, Jin-Soo; Ha, Jong-Myung; Choung, Se-Young

2014-01-01

Following cross-linking by microbial transglutaminase, modified oyster proteins were hydrolyzed to improve inhibitory activity against angiotensin-converting enzyme (ACE) inhibitory activity with the use of a single protease, or a combination of six proteases. The oyster hydrolysate with the lowest 50% ACE inhibitory concentration (IC50) of 0.40 mg/mL was obtained by two-step hydrolysis of the cross-linked oyster protein using Protamex and Neutrase. Five ACE inhibitory peptides were purified from the oyster hydrolysate using a multistep chromatographic procedure comprised of ion-exchange, size exclusion, and reversed-phase liquid chromatography. Their sequences were identified as TAY, VK, KY, FYN, and YA, using automated Edman degradation and mass spectrometry. These peptides were synthesized, and their IC50 values were measured to be 16.7, 29.0, 51.5, 68.2, and 93.9 μM, respectively. Toxicity of the peptides on the HepG2 cell line was not detected. The oyster hydrolysate also significantly decreased the systolic blood pressure of spontaneously hypertensive rats (SHR). The antihypertensive effect of the oyster hydrolysate on SHR was rapid and long-lasting, compared to commercially obtained sardine hydrolysate. These results suggest that the oyster hydrolysate could be a source of effective nutraceuticals against hypertension. PMID:25140307

A PCR-based diagnostic assay for the detection of Roseovarius crassostreae in Crassostrea virginica affected by juvenile oyster disease (JOD)

USGS Publications Warehouse

Maloy, A.P.; Barber, B.J.; Boettcher, K.J.

2005-01-01

We have developed a PCR-assay for the diagnosis of juvenile oyster disease (JOD) based on the detection of Roseovarius crassostreae directly from affected oysters. Species-specific primers are used to amplify the 16S-23S rDNA internal transcribed spacer (ITS) of R. crassostreae, and confirmation of product identity is accomplished by restriction enzyme analysis. No false positives were obtained with either closely related bacterial species or from other DNAs present in oyster samples. The assay has the potential to detect as few as 10 cells of R. crassostreae per oyster when samples are taken from the inner valve surfaces of the animal. Inclusion of material from soft body surfaces is not necessary, and may reduce sensitivity approximately 10-fold. In a JOD-affected population, a positive PCR result was obtained from all oysters from which these bacteria were subsequently cultured. The assay also detected the presence of R. crassostreae in 2 oysters from which no R. crassostreae isolates were recovered. No R. crassostreae was detected by either PCR or bacteriology in oysters from a population that was not exhibiting JOD-signs. This assay is expected to advance regional disease management efforts and provide valuable insights into the disease process and epizootiology of JOD. ?? Inter-Research 2005.

The role of tissue-specific microbiota in initial establishment success of Pacific oysters.

PubMed

Lokmer, Ana; Kuenzel, Sven; Baines, John F; Wegner, Karl Mathias

2016-03-01

Microbiota can have positive and negative effects on hosts depending on the environmental conditions. Therefore, it is important to decipher host-microbiota-environment interactions, especially under natural conditions exerting (a)biotic stress. Here, we assess the relative importance of microbiota in different tissues of Pacific oyster for its successful establishment in a new environment. We transplanted oysters from the Southern to the Northern Wadden Sea and controlled for the effects of resident microbiota by administering antibiotics to half of the oysters. We then followed survival and composition of haemolymph, mantle, gill and gut microbiota in local and translocated oysters over 5 days. High mortality was recorded only in non-antibiotic-treated translocated oysters, where high titres of active Vibrio sp. in solid tissues indicated systemic infections. Network analyses revealed the highest connectivity and a link to seawater communities in the haemolymph microbiota. Since antibiotics decreased modularity and increased connectivity of the haemolymph-based networks, we propose that community destabilization in non-treated translocated oysters could be attributed to interactions between resident and external microbiota, which in turn facilitated passage of vibrios into solid tissues and invoked disease. These interactions of haemolymph microbiota with the external and internal environment may thus represent an important component of oyster fitness. © 2015 Society for Applied Microbiology and John Wiley & Sons Ltd.

Absence of surface-associated microorganisms in adult oysters (Crassostrea gigas).

PubMed Central

Garland, C D; Nash, G V; McMeekin, T A

1982-01-01

Healthy, actively feeding intertidal oysters were removed from an estuarine environment (Pipeclay Lagoon, Tasmania). The epithelial surfaces of various organs of the mantle cavity and alimentary tract were explored by scanning and transmission electron microscopy. All epithelial tissues examined were ciliated, and nearly all were partly covered with secreted mucus. However, microorganisms were seen rarely in the adhesive mucus and never attached to the epithelium. Electron microscopy also failed to demonstrate a surface microflora in emersed oysters which had been incubated at 5 to 25 degrees C for 6 or 24 h. The absence of an internal surface microflora did not vary on a seasonal basis. In laboratory experiments, oysters were allowed to filter feed from seawater containing diverse types of marine bacteria at concentrations of 10(3) to 10(7)/mL. However, no surface microflora could be found within actively feeding oysters or in emersed animals incubated at 20 degrees C for 6 or 24 h. In contrast, surface-associated microorganisms were detected readily by scanning electron microscopy on the external shell of healthy oysters and on various internal tissues in spoiled oysters. It is suggested that the major mechanisms restricting microbial growth within oysters are ciliary movement and mucus secretion. Images PMID:7181503

Salinity Tolerance of Early-Stage Oyster Larvae in the Choptank River, Chesapeake Bay, USA

NASA Astrophysics Data System (ADS)

Scharping, R. J.; North, E. W.; Plough, L. V.

2016-02-01

The eastern oyster (Crassostrea virginica) is ecologically and economically important to the Chesapeake Bay, Maryland, USA. Its population, however, is currently estimated to be less than one percent of what it was historically. To restore oyster populations, techniques such as larval transport modeling are being implemented to aid the selection of sanctuary locations. These models can incorporate biological factors such as salinity-induced mortality, but no data from low-salinity areas such as the oligohaline Choptank River, a major focus of oyster restoration in the Chesapeake, exist. The purpose of our study was to generate salinity-induced mortality data for oyster larvae from the Choptank River and compare their tolerances to those of oysters from different salinity regimes. We performed three experiments looking at the effect of salinities from 3 to 26 on the survival of larvae from 4 to 48 hrs post-fertilization. While overall survival differed across experiments, we found a consistent minimum survival threshold between 5-7 and peak survival window between 9-16. These salinity values were about 7 lower than those of oysters from the polyhaline Long Island Sound (threshold: 12.5-15; peak: 17.5-27). This research has direct application to oyster restoration in the Choptank River and similar low-salinity areas by improving larval transport model predictions.

Disturbance influences oyster community richness and evenness, but not diversity.

PubMed

Kimbro, David L; Grosholz, Edwin D

2006-09-01

Foundation species in space-limited systems can increase diversity by creating habitat, but they may also reduce diversity by excluding primary space competitors. These contrasting forces of increasing associate diversity and suppressing competitor diversity have rarely been examined experimentally with respect to disturbance. In a benthic marine community in central California, where native oysters are a foundation species, we tested how disturbance influenced overall species richness, evenness, and diversity. Surprisingly, overall diversity did not peak across a disturbance gradient because, as disturbance decreased, decreases in overall species evenness opposed increases in overall species richness. Decreasing disturbance intensity (high oyster abundance) led to increasing species richness of sessile and mobile species combined. This increase was due to the facilitation of secondary sessile and mobile species in the presence of oysters. In contrast, decreasing disturbance intensity and high oyster abundance decreased the evenness of sessile and mobile species. Three factors likely contributed to this decreased evenness: oysters reduced abundances of primary sessile species due to space competition; oysters supported more rare mobile species; and oysters disproportionately increased the relative abundance of a few common mobile species. Our results highlight the need for further studies on how disturbance can differentially affect the evenness and richness of different functional groups, and ultimately how these differences affect the relationship between overall diversity and ecosystem function.

Persistence, Seasonal Dynamics and Pathogenic Potential of Vibrio Communities from Pacific Oyster Hemolymph

PubMed Central

Wendling, Carolin C.; Batista, Frederico M.; Wegner, K. Mathias

2014-01-01

Bacteria of the genus Vibrio occur at a continuum from free-living to symbiotic life forms, including opportunists and pathogens, that can contribute to severe diseases, for instance summer mortality events of Pacific oysters Crassostrea gigas. While most studies focused on Vibrio isolated from moribund oysters during mortality outbreaks, investigations of the Vibrio community in healthy oysters are rare. Therefore, we characterized the persistence, diversity, seasonal dynamics, and pathogenicity of the Vibrio community isolated from healthy Pacific oysters. In a reciprocal transplant experiment we repeatedly sampled hemolymph from adult Pacific oysters to differentiate population from site-specific effects during six months of in situ incubation in the field. We characterized virulence phenotypes and genomic diversity based on multilocus sequence typing in a total of 70 Vibrio strains. Based on controlled infection experiments we could show that strains with the ability to colonize healthy adult oysters can also have the potential to induce high mortality rates on larvae. Diversity and abundance of Vibrio varied significantly over time with highest values during and after spawning season. Vibrio communities from transplanted and stationary oysters converged over time, indicating that communities were not population specific, but rather assemble from the surrounding environment forming communities, some of which can persist over longer periods. PMID:24728233

Parasites infecting the cultured oyster Crassostrea gasar (Adanson, 1757) in Northeast Brazil.

PubMed

Queiroga, Fernando Ramos; Vianna, Rogério Tubino; Vieira, Cairé Barreto; Farias, Natanael Dantas; Da Silva, Patricia Mirella

2015-05-01

The oyster Crassostrea gasar is a species widely used as food and a source of income for the local population of the estuaries of Northeast Brazil. Perkinsus marinus and Perkinsus olseni are deleterious parasites for oyster farming and were recently detected in Brazil. In this study, a histopathologic survey of the oyster C. gasar cultured in the estuary of the River Mamanguape (Paraíba State) was performed. Adult oysters were collected in December 2011 and March, May, August and October 2012 and processed for histology and Perkinsus sp. identification by molecular analyses. Histopathological analysis revealed the presence of parasitic organisms including viral gametocytic hypertrophy, prokaryote-like colonies, protozoans (Perkinsus sp. and Nematopsis sp.) and metazoans (Tylocephalum sp. and cestodes). Other commensal organisms were also detected (the protozoan Ancistrocoma sp. and the turbellarian Urastoma sp.). The protozoan parasite Perkinsus sp. had the highest overall prevalence among the symbiotic organisms studied (48.9%), followed by Nematopsis sp. (36.3%). The other organisms were only sporadically observed. Only the protozoan Perkinsus sp. caused alterations in the oysters' infected organs. Molecular analyses confirmed the presence of P. marinus, P. olseni and Perkinsus beihaiensis infecting the oyster C. gasar. This is the first report of P. beihaiensis in this oyster species.

[Shellfish monitoring system for paralytic shellfish toxins using enzyme-linked immunosorbent assay].

PubMed

Shinozaki, Takashi; Watanabe, Ryuichi; Kawatsu, Kentaro; Sakurada, Kiyonari; Takahi, Shinya; Ueno, Ken-ichi; Matsushima, Ryoji; Suzuki, Toshiyuki

2013-01-01

We investigated the applicability of enzyme-linked immunosorbent assay (PSP-ELISA) using a monoclonal antibody against paralytic shellfish toxins (PST) for screening oysters collected at several coastal areas in Kumamoto prefecture, Japan. Oysters collected between 2007 and 2010 were analyzed by PSP-ELISA. As an alternative calibrant, a naturally contaminated oyster extract was used to quantify toxins in the oyster samples. The toxicity of the calibrant oyster extract determined by the official testing method, mouse bioassay (MBA), was 4 MU/g. Oyster samples collected over 3 years showed a similar toxin profile to the alternative standard, resulting in good agreement between the PSP-ELISA and the MBA. The PSP-ELISA method was better than the MBA in terms of sensitivity, indicating that it may be useful for earlier warning of contamination of oysters by PST in the distinct coastal areas. To use the PSP-ELISA as a screening method prior to MBA, we finally set a screening level at 2 MU/g PSP-ELISA for oyster monitoring in Kumamoto prefecture. We confirmed that there were on samples exceeding the quarantine level (4 MU/g) in MBA among samples quantified as below the screening level by the PSP-ELISA. It was concluded that the use of PSP-ELISA could reduce the numbers of animals needed for MBA testing.

76 FR 75543 - Environmental Impacts Statements; Notice of Availability

Federal Register 2010, 2011, 2012, 2013, 2014

2011-12-02

... Profile Zones (DFPZs), Lassen National Forest, Almanor Ranger District, Plumas County, CA, Comment Period... Treatment Activities, Updated and New Information, Idaho Panhandle National Forests, Priest Lake Ranger... (937) 257-5899. EIS No. 20110403, Draft EIS, USFS, CA, Creeks II Forest Restoration Project, Proposal...

In situ bioremediation of an underground diesel fuel spill: A case history

NASA Astrophysics Data System (ADS)

Frankenberger, W. T.; Emerson, K. D.; Turner, D. W.

1989-05-01

In the winter months of 1983, approximately 1000 gallons of diesel fuel had flowed along an asphalt parking lot of a commercial establishment towards a surface drain near an open creek. Investigations led to the discovery of an underground storage tank leaking diesel fuel. Exploratory borings showed that contamination was near the surface horizon and the capillary zone of the water table. Hydrocarbon quantities ranged up to 1500 mg/kg of soil. The plume continued to move in an eastward direction toward the surface water of the creek. A laboratory study indicated relatively high numbers of hydrocarbon-oxidizing organisms relative to glucose-utilizing microorganisms in the unsaturated vadose zone. Bioreclamation was initiated in April 1984 by injecting nutrients (nitrogen and phosphorus) and hydrogen peroxide and terminated in October 1984 upon no detection (<1 mg/kg) of hydrocarbons. A verification boring within the vicinity of the contaminated plume confirmed that residual contamination had attained background levels. The monitoring program was terminated in January 1987.

Simulation of the Shallow Ground-Water-Flow System near Grindstone Creek and the Community of New Post, Sawyer County, Wisconsin

USGS Publications Warehouse

Juckem, Paul F.; Hunt, Randall J.

2007-01-01

A two-dimensional, steady-state ground-water-flow model of Grindstone Creek, the New Post community, and the surrounding areas was developed using the analytic element computer code GFLOW. The parameter estimation code UCODE was used to obtain a best fit of the model to measured water levels and streamflows. The calibrated model was then used to simulate the effect of ground-water pumping on base flow in Grindstone Creek. Local refinements to the regional model were subsequently added in the New Post area, and local water-level data were used to evaluate the regional model calibration. The locally refined New Post model was also used to simulate the areal extent of capture for two existing water-supply wells and two possible replacement wells. Calibration of the regional Grindstone Creek simulation resulted in horizontal hydraulic conductivity values of 58.2 feet per day (ft/d) for the regional glacial and sandstone aquifer and 7.9 ft/d for glacial thrust-mass areas. Ground-water recharge in the calibrated regional model was 10.1 inches per year. Simulation of a golf-course irrigation well, located roughly 4,000 feet away from the creek, and pumping at 46 gallons per minute (0.10 cubic feet per second, ft3/s), reduced base flow in Grindstone Creek by 0.05 ft3/s, or 0.6 percent of the median base flow during water year 2003, compared to the calibrated model simulation without pumping. A simulation of peak pumping periods (347 gallons per minute or 0.77 ft3/s) reduced base flow in Grindstone Creek by 0.4 ft3/s (4.9 percent of the median base flow). Capture zones for existing and possible replacement wells delineated by the local New Post simulation extend from the well locations to an area south of the pumping well locations. Shallow crystalline bedrock, generally located south of the community, limits the extent of the aquifer and thus the southerly extent of the capture zones. Simulated steady-state pumping at a rate of 9,600 gallons per day (gal/d) from a possible replacement well near the Chippewa Flowage induced 70 gal/d of water from the flowage to enter the aquifer. Although no water-quality samples were collected from the Chippewa Flowage or the ground-water system, surface-water leakage into the ground-water system could potentially change the local water quality in the aquifer.

Spatial and Temporal Dynamics of Mass Mortalities in Oysters Is Influenced by Energetic Reserves and Food Quality

PubMed Central

Pernet, Fabrice; Lagarde, Franck; Jeannée, Nicolas; Daigle, Gaetan; Barret, Jean; Le Gall, Patrik; Quere, Claudie; D’orbcastel, Emmanuelle Roque

2014-01-01

Although spatial studies of diseases on land have a long history, far fewer have been made on aquatic diseases. Here, we present the first large-scale, high-resolution spatial and temporal representation of a mass mortality phenomenon cause by the Ostreid herpesvirus (OsHV-1) that has affected oysters (Crassostrea gigas) every year since 2008, in relation to their energetic reserves and the quality of their food. Disease mortality was investigated in healthy oysters deployed at 106 locations in the Thau Mediterranean lagoon before the start of the epizootic in spring 2011. We found that disease mortality of oysters showed strong spatial dependence clearly reflecting the epizootic process of local transmission. Disease initiated inside oyster farms spread rapidly beyond these areas. Local differences in energetic condition of oysters, partly driven by variation in food quality, played a significant role in the spatial and temporal dynamics of disease mortality. In particular, the relative contribution of diatoms to the diet of oysters was positively correlated with their energetic reserves, which in turn decreased the risk of disease mortality. PMID:24551106

Spatial and temporal dynamics of mass mortalities in oysters is influenced by energetic reserves and food quality.

PubMed

Pernet, Fabrice; Lagarde, Franck; Jeannée, Nicolas; Daigle, Gaetan; Barret, Jean; Le Gall, Patrik; Quere, Claudie; D'orbcastel, Emmanuelle Roque

2014-01-01

Although spatial studies of diseases on land have a long history, far fewer have been made on aquatic diseases. Here, we present the first large-scale, high-resolution spatial and temporal representation of a mass mortality phenomenon cause by the Ostreid herpesvirus (OsHV-1) that has affected oysters (Crassostrea gigas) every year since 2008, in relation to their energetic reserves and the quality of their food. Disease mortality was investigated in healthy oysters deployed at 106 locations in the Thau Mediterranean lagoon before the start of the epizootic in spring 2011. We found that disease mortality of oysters showed strong spatial dependence clearly reflecting the epizootic process of local transmission. Disease initiated inside oyster farms spread rapidly beyond these areas. Local differences in energetic condition of oysters, partly driven by variation in food quality, played a significant role in the spatial and temporal dynamics of disease mortality. In particular, the relative contribution of diatoms to the diet of oysters was positively correlated with their energetic reserves, which in turn decreased the risk of disease mortality.

Pesticides and Ostreid Herpesvirus 1 Infection in the Pacific Oyster, Crassostrea gigas.

PubMed

Moreau, Pierrick; Faury, Nicole; Burgeot, Thierry; Renault, Tristan

2015-01-01

Since 2008, mass mortality outbreaks have been reported in all French regions producing Pacific oysters, and in several Member States of the European Union. These mass mortality events of Pacific oysters are related to OsHV-1 infection. They occur during spring and summer periods leaving suspect the quality of the marine environment and the role of seasonal use of pesticides associated with the arrival of freshwater in oyster rearing areas. Pesticides have been also detected in French coastal waters, especially in areas of oyster production. Using PMA real-time PCR we showed that a mixture of 14 pesticides has no effect on the integrity of virus capsids from viral suspension in the conditions tested. A contact of oysters with this pesticide mixture was related to higher mortality rates among experimentally infected animals in comparison with control ones (no previous pesticide exposure before experimental infection). We therefore suggest that pesticides at realistic concentration can exert adverse effects on Pacific oysters and causes an increased susceptibility to the viral infection in experimental conditions.

Pesticides and Ostreid Herpesvirus 1 Infection in the Pacific Oyster, Crassostrea gigas

PubMed Central

Moreau, Pierrick; Faury, Nicole; Burgeot, Thierry; Renault, Tristan

2015-01-01

Since 2008, mass mortality outbreaks have been reported in all French regions producing Pacific oysters, and in several Member States of the European Union. These mass mortality events of Pacific oysters are related to OsHV-1 infection. They occur during spring and summer periods leaving suspect the quality of the marine environment and the role of seasonal use of pesticides associated with the arrival of freshwater in oyster rearing areas. Pesticides have been also detected in French coastal waters, especially in areas of oyster production. Using PMA real-time PCR we showed that a mixture of 14 pesticides has no effect on the integrity of virus capsids from viral suspension in the conditions tested. A contact of oysters with this pesticide mixture was related to higher mortality rates among experimentally infected animals in comparison with control ones (no previous pesticide exposure before experimental infection). We therefore suggest that pesticides at realistic concentration can exert adverse effects on Pacific oysters and causes an increased susceptibility to the viral infection in experimental conditions. PMID:26107171

Processes of zinc attenuation by biogenic manganese oxides forming in the hyporheic zone of Pinal Creek, Arizona

PubMed Central

Fuller, Christopher C.; Bargar, John R.

2014-01-01

The distribution and speciation of Zn sorbed to biogenic Mn oxides forming in the hyporheic zone of Pinal Creek, AZ, was investigated using micro-focused Extended X-ray Absorption Fine Structure (EXAFS) and X-ray fluorescence (μSXRF) mapping , bulk EXAFS, and chemical extraction. μSXRF and chemical extractions show that contaminant Zn co-varied with Mn in streambed sediment grain coatings. Bulk and micro-focused EXAFS spectra of Zn in the biogenic Mn oxides coating are indicative of Zn forming triple corner sharing inner-sphere complexes over octahedral vacancies in the Mn oxide sheet structure. Zn desorbed in response to decreasing in pH in batch experiments and resulted in near-equal dissolved Zn at each pH over a 10-fold range in solid to solution ratio. The geometry of sorbed Zn was unchanged after 50% desorption at pH 5, indicating desorption is not controlled by dissolution of secondary Zn phases. In sum, these findings support the idea that Zn attenuation in Pinal Creek is largely controlled by sorption to microbial Mn oxides forming in the streambed during hyporheic exchange. Sorption to biogenic Mn oxides is likely an important process in Zn attenuation in circum-neutral pH reaches of many acid-mine drainage contaminated streams when dissolved Mn is present. PMID:24460038

Tectonic evolution of the central Brooks Range mountain front: Evidence from the Atigun Gorge region

USGS Publications Warehouse

Mull, C.G.; Glenn, R.K.; Adams, K.E.

1997-01-01

Atigun Gorge, at the northern front of the eastern Endicott Mountains, contains well-exposed rocks of the upper part of the Endicott Mountains allochthon and rocks of the structurally higher Picnic Creek or Ipnavik River allochthon. These allochthons contain rocks as young as Early Cretaceous (Valanginian) and are separated by a nearly vertical fault zone that contains exotic blocks of Triassic and Jurassic chert and silicified mudstone. Siliceous rocks of this type are not present in the Endicott Mountains allochthon but are characteristic of the Picnic Creek, Ipnavik River, and some of the other allochthons that structurally overlie the Endicott Mountains allochthon in the central and western Brooks Range. These exotic blocks, therefore indicate that structurally higher rocks of either the Picnic Creek or Ipnavik River allochthon were emplaced during the Early Cretaceous and are preserved along the northern flank of the eastern Endicott Mountains. The deformed thickness of this higher allochthon in the subsurface north of the mountains is unknown but probably exceeds 2 kilometers. Similar relations are mapped east of Atigun Gorge in an area of structural transition from the eastern Endicott Mountains into the northern Philip Smith Mountains, which are formed by the parautochthonous North Slope stratigraphic assemblage. The allochthonous rocks at the mountain front are regionally unconformably overlain by proximal Lower Cretaceous (Albian) foredeep conglomerate at the southern flank of the Colville basin, but at Atigun Gorge, the base of these deposits is interpreted as a possible back thrust at a triangle zone. Conglomerate clasts in the foredeep deposits are dominantly chert, mafic igneous rock, and other lithologies characteristic of the Picnic Creek and Ipnavik River allochthons and scattered clasts from the Endicott Mountains allochthon. The conglomerates show that the chert-rich allochthonous rocks and the Endicott Mountains allochthon were emplaced in the north-central Brooks Range by large-scale crustal shortening (>300 km) between the Valanginian and Albian (??135 to ??112 Ma). This orogenic event significantly postdates early stages of Brooks Range orogeny but predates later stages of orogeny documented by stratigraphic and apatite fission-track data. These relations reduce the magnitude of shortening inferred at the triangle zone at the Brooks Range mountain front. The outcrop data suggest that some of the strata preserved at a structurally low level north of the mountain front and visible in the seismic data of the Trans-Alaska Crustal Transect (TACT) may consist of clastic sedimentary rocks of the structurally higher Picnic Creek or Ipnavik River allochthon. Copyright 1997 by the American Geophysical Union.

Recent Monitoring of Suspended Sediment Patterns along Louisiana's Coastal Zone using ER-2 based MAS Data and Terra Based MODIS Data

NASA Technical Reports Server (NTRS)

Moeller, Christopher C.; Gunshor, M. M.; Menzel, W. P.; Huh, O. K.; Walker, N. D.; Rouse, L. J.

2001-01-01

The University nf Wisconsin and Louisiana State University have teamed to study the forcing of winter season cold frontal wind systems on sediment distribution patterns and geomorphology in the Louisiana coastal zone. Wind systems associated with cold fronts have been shown to model coastal circulation and resuspend sediments along the micro tidal Louisiana coast (Roberts et at. 1987, Moeller et al. 1993). Remote sensing data is being used to map and track sediment distribution patterns for various wind conditions. Suspended sediment is a building material for coastal progradation and wetlands renewal, but also restricts access to marine nursery environments and impacts oyster bed health. Transferring a suspended sediment concentration (SSC) algorithm to EOS MODerate resolution Imaging Spectroradiometer (MODIS; Barnes et al. 1998) observations may enable estimates of SSC globally.

INFLUENCE OF ALTERED FRESHWATER FLOWS ON EASTERN OYSTERS

EPA Science Inventory

Abstract for National Shellfisheries Association

Eastern oysters Crassostrea virginica are prominent in Gulf of Mexico estuaries. Valued both commercially and ecologically, oyster populations are threatened by human activity, including dredging, harvesting, and upstream al...

Oyster shell conveyor used to lift shells from the dock ...

Library of Congress Historic Buildings Survey, Historic Engineering Record, Historic Landscapes Survey

Oyster shell conveyor used to lift shells from the dock into the receiving room housed in the 1965 concrete block addition. - J.C. Lore Oyster House, 14430 Solomons Island Road, Solomons, Calvert County, MD

Calculation of Oyster Benefits with a Bioenergetics Model of the Virginia Oyster

DTIC Science & Technology

2014-11-01

White, M., Powell. E., and Ray, S. (1988). “Effects of parasitism by the pyramidellid gastropod Boonea impressa on the net productivity of oysters...Effects of parasitism by the pyramidellid gastropod Boonea impressa on the net productivity of oysters (Crassostrea viginica),” Estuarine Coastal...Wisconsin Fish Model (Hanson et al. 1997) and was adapted for a model of Atlantic menhaden in Chesapeake Bay (Dalyander and Cerco 2010). Subsequent

Bioaccumulation of heavy metals in oysters from the southern coast of Korea: assessment of potential risk to human health.

PubMed

Mok, Jong Soo; Yoo, Hyun Duk; Kim, Poong Ho; Yoon, Ho Dong; Park, Young Cheol; Lee, Tae Seek; Kwon, Ji Young; Son, Kwang Tae; Lee, Hee Jung; Ha, Kwang Soo; Shim, Kil Bo; Kim, Ji Hoe

2015-06-01

From 2009 to 2013, 80 oyster and 16 seawater samples were collected from the southern coast of Korea, including designated shellfish growing areas for export. The concentrations and bioaccumulation of heavy metals were determined, and a potential risk assessment was conducted to evaluate their hazards towards human consumption. The cadmium (Cd) concentration in oysters was the highest of three hazardous metals, including Cd, lead (Pb), and mercury (Hg), however, below the standards set by various countries. The metal bioaccumulation ratio in oysters was relatively high for zinc and Cd but low for Hg, Pb, arsenic, and chromium. The estimated dietary intakes of all heavy metals for oysters accounted for 0.02%-17.75% of provisional tolerable daily intake. The hazard index for all samples was far <1.0, which indicates that the oysters do not pose an appreciable hazard to humans for the metal pollutants of study.

Development of a Simple Method for Concentrating Enteroviruses from Oysters

PubMed Central

Sobsey, Mark D.; Wallis, Craig; Melnick, Joseph L.

1975-01-01

The development of a simple method for concentrating enteroviruses from oysters is described. In this method viruses in homogenized oyster tissues are efficiently adsorbed to oyster solids at pH 5.5 and low salt concentration. After low-speed centrifugation, the supernatant is discarded and viruses are eluted from the sedimented oyster solids by resuspending them in pH 3.5 glycine-buffered saline. The solids are then removed by low-speed centrifugation, and the virus-containing supernatant is filtered through a 0.2-μm porosity filter to remove bacteria and other small particulates without removing viruses. The virus-containing filtrate is then concentrated to a volume of a few milliliters by ultrafiltration, and the concentrate obtained is inoculated directly into cell cultures for virus assay. When tested with pools of oysters experimentally contaminated with small amounts of different enteroviruses, virus recovery efficiency averaged 63%. PMID:234154

Development of a simple method for concentrating enteroviruses from oysters.

PubMed

Sobsey, M D; Wallis, C; Melnick, J L

1975-01-01

The development of a simple method for concentrating enteroviruses from oysters is described. In this method viruses in homogenized oyster tissues are efficiently absorbed to oyster solids at pH 5.5 and low salt concentration. After low-speed centrifugation, the supernatant is discarded and viruses are eluted from the sedimented oyster solids by resuspending them in pH 3.5 glycine-buffered saline. The solids are then removed by low-speed centrifugation, and the virus-containing supernatant is filtered through a 0.2-micronm porosity filter to remove bacteria and other small particulates without removing viruses. The virus-containing filtrate is then concentrated to a volume of a few milliliters by ultrafiltration, and the concentrate obtained is inoculated directly into cell cultures for virus assay. When tested with pools of oysters experimentally contaminated with small amounts of different enteroviruses, virus recovery efficiency averaged 63%.

An outbreak of norovirus infection associated with fermented oyster consumption in South Korea, 2013.

PubMed

Cho, H G; Lee, S G; Lee, M Y; Hur, E S; Lee, J S; Park, P H; Park, Y B; Yoon, M H; Paik, S Y

2016-10-01

An acute gastroenteritis (AGE) outbreak was reported in May 2013 in Gyeonggi Province, South Korea. Eight students who had eaten breakfast on 21 May 2013 at a high-school restaurant exhibited AGE symptoms. Our case-control study showed that a strong association was observed between AGE symptoms and fermented oyster consumption. Virological studies also indicated that noroviruses (NoVs) were detected from both clinical samples and fermented oyster samples, and multiple different genotypes (genogroups GII.4, GII.11 and GII.14) of NoVs were present in both samples. The nucleotide sequence similarity between the strains found in the clinical samples and those in the fermented oysters was more than 99·5%. Therefore, to prevent further outbreaks, proper management of raw oysters is necessary and the food industry should be aware of the risk of viral gastroenteritis posed by fermented oysters contaminated with NoVs.

Offshore suspension relaying to reduce levels of Vibrio vulnificus in oysters (Crassostrea virginica).

PubMed

Motes, M L; DePaola, A

1996-10-01

Oysters naturally contaminated with 10(3) to 10(4) most probable numbers (MPN) of Vibrio vulnificus per g were relayed to offshore waters (salinity, 30 to 34 ppt), where they were suspended in racks at a depth of 7.6 m. V. vulnificus counts in oysters were reduced to < 10 MPN/g within 7 to 17 days in five of the six studies. At the end of the studies (17 to 49 days), V. vulnificus levels were reduced further and ranged from a mean of 0.23 to 2.6 MPN/g. Oyster mortalities during relaying were < 6%. The reduction of V. vulnificus in relayed oysters is associated with exposure to high-salinity environments essentially devoid of V. vulnificus. Offshore suspension relaying may be a method that industry can employ to reduce V. vulnificus levels in raw Gulf Coast oysters.

The estuarine geochemical reactivity of Zn isotopes and its relevance for the biomonitoring of anthropogenic Zn and Cd contaminations from metallurgical activities: Example of the Gironde fluvial-estuarine system, France

NASA Astrophysics Data System (ADS)

Petit, Jérôme C. J.; Schäfer, Jörg; Coynel, Alexandra; Blanc, Gérard; Chiffoleau, Jean-François; Auger, Dominique; Bossy, Cécile; Derriennic, Hervé; Mikolaczyk, Mathilde; Dutruch, Lionel; Mattielli, Nadine

2015-12-01

Zinc stable isotopes measurements by MC-ICP-MS, validated by laboratory intercalibrations, were performed on wild oysters, suspended particles and filtered river/estuarine water samples to provide new constraints for the use of Zn isotopes as environmental tracers. The samples selected were representative of the long range (400 km) transport of metal (Zn, Cd, etc.) contamination from former Zn-refining activities at Decazeville (i.e. δ66Zn > 1‰) and its phasing out, recorded during 30 years in wild oysters from the Gironde Estuary mouth (RNO/ROCCH sample bank). The study also addresses additional anthropogenic sources (urban and viticulture) and focuses on geochemical reactivity of Zn in the turbidity gradient and the maximum turbidity zone (MTZ) of the fluvial Gironde Estuary. In this area, dissolved Zn showed a strong removal onto suspended particulate matter (SPM) and progressive enrichment in heavy isotopes with increasing SPM concentrations varying from δ66Zn = -0.02‰ at 2 mg/L to +0.90‰ at 1310 mg/L. These signatures were attributed to kinetically driven adsorption due to strongly increasing sorption sites in the turbidity gradient and MTZ of the estuary. Oysters from the estuary mouth, contaminated sediments from the Lot River and SPM entering the estuary showed parallel historical evolutions (1979-2010) for Zn/Cd ratios but not for δ66Zn values. Oysters had signatures varying from δ66Zn = 1.43‰ in 1983 to 1.18‰ in 2010 and were offset by δ66Zn = 0.6-0.7‰ compared to past (1988) and present SPM from the salinity gradient. Isotopic signatures in river-borne particles entering the Gironde Estuary under contrasting freshwater discharge regimes during 2003-2011 showed similar values (δ66Zn ≈ 0.35 ± 0.03‰; 1SD, n = 15), i.e. they were neither related to former metal refining activities at least for the past decade nor clearly affected by other anthropogenic sources. Therefore, the Zn isotopic signatures in Gironde oysters reflect the geochemical reactivity of Zn in the estuary rather than signatures of past metallurgical contaminations in the watershed as recorded in contaminated river sediments. The study also shows that the isotopic composition of Zn is strongly fractionated by its geochemical reactivity in the Gironde Estuary, representative of meso-macrotidal estuarine systems.

Cattaraugus Creek Harbor, New York General Design Memorandum. Phase II. (Detailed Design). Volume II. Appendix E. Littoral Processes and Sedimentation in the Cattaraugus Embayment, New York. Appendix F. Sediment Transport in Cattaraugus Creek.

DTIC Science & Technology

1976-03-01

beaches than any other part of the southeastern shoreline of Lake Erie . It is the only major sand accumulation zone with the exception of Presque Isle , in...52 20. Photographs of zonal site #10. 54 21. Photograph and map of zonal site #11, Presque Isle , Pa. 57 F22. Photographs and beach profiles at zonal...site #11. 59 23. Photograph of zonal site #12, the recurved spit area on Presque Isle , Pa. 62 24. Block diagram of recurved spit area of Presque Isle

BUFFALO PEAKS WILDERNESS STUDY AREA, COLORADO.

USGS Publications Warehouse

Hedlund, D.C.; Wood, R.H.

1984-01-01

Field investigations were conducted to evaluate the mineral-resource potential of the Buffalo Peaks Wilderness Study Area, Colorado. On the basis of this study there is a probable mineral-resource potential for silver vein and bedding replacement deposits along the Weston Pass fault zone, for hydrothermal vein-type uranium deposits in the vicinity of the Parkdale iron pit, and for gold vein deposits in the parts of the Granite and Four Mile districts that are within the wilderness study area. A probable barite resource potential occurs at Rough and Tumbling Creek and near Spring Creek on the east side of the study area. There is little promise for the occurrence of energy resources.

Geologic Map of the Upper Wolf Island Creek Watershed, Reidsville Area, Rockingham County, North Carolina

USGS Publications Warehouse

Horton, J. Wright; Geddes, Donald J.

2006-01-01

This geologic map provides a foundation for hydrogeologic investigations in the Reidsville area of Rockingham County, north-central North Carolina. The 16-mi2 area within the Southeast Eden and Reidsville 7.5-min quadrangles includes the watershed of Wolf Island Creek and its tributary, Carroll Creek, upstream of their confluence. Layered metamorphic rocks in this area of the Milton terrane, here informally named the Chinqua-Penn metamorphic suite, include a heterogeneous mica gneiss and schist unit that contains interlayers and lenses of white-mica schist, felsic gneiss, amphibolite, and ultramafic rock; a felsic gneiss that contains interlayers of amphibolite, white-mica schist, and minor ultramafic lenses; and a migmatitic biotite gneiss. Crushed stone is produced from an active quarry in the felsic gneiss. Igneous intrusive rocks include a mafic-ultramafic assemblage that may have originated as mafic intrusive bodies containing ultramafic cumulates, a foliated two-mica granite informally named the granite of Reidsville, and unmetamorphosed Jurassic diabase dikes. The newly recognized Carroll Creek shear zone strikes roughly east-west and separates heterogeneous mica gneiss and schist to the north from structurally overlying felsic gneiss to the south. Regional amphibolite-facies metamorphism accompanied polyphase ductile deformation in the metamorphic rocks. Two phases of isoclinal to tight folding and related penetrative deformation, described as D1 and D2, were followed by phases of high-strain mylonitic deformation in shear zones and late gentle to open folding. Later brittle deformation produced minor faults, steep joints, foliation-parallel parting, and sheeting joints. The metamorphic and igneous rocks are mantled by saprolite and residual soil derived from weathering of the underlying bedrock, and unconsolidated Quaternary alluvium occupies the flood plains of Wolf Island Creek and its tributaries. The geologic map delineates lithologic and structural features that may act as barriers or conduits for ground-water flow. It provides a hydrogeologic framework for the upper Wolf Island Creek drainage basin, including coreholes and ground-water monitoring wells along two transects. Collaborative hydrogeologic investigations by the North Carolina Department of Environment and Natural Resources and the U.S. Geological Survey are in progress to increase understanding of the influence of geological features on ground-water quality, availability, and transport in an area representative of large areas in the west-central Piedmont.

Apparent Loss of Vibrio vulnificus from North Carolina Oysters Coincides with a Drought-Induced Increase in Salinity

PubMed Central

Froelich, Brett A.; Williams, Tiffany C.; Noble, Rachel T.

2012-01-01

Despite years of successful isolation of Vibrio vulnificus from estuarine waters, beginning in 2007, it was extremely difficult to culture V. vulnificus from either North Carolina estuarine water or oyster samples. After employing culture-based methods as well as PCR and quantitative PCR for the detection of V. vulnificus, always with negative results, we concluded that this pathogen had become nearly undetectable in the North Carolina estuarine ecosystem. We ensured that the techniques were sound by seeding North Carolina oysters with V. vulnificus and performing the same tests as those previously conducted on unadulterated oysters. V. vulnificus was readily detected in the seeded oysters using both classes of methods. Furthermore, oysters were obtained from the Gulf of Mexico, and V. vulnificus was easily isolated, confirming that the methodology was sound but that the oysters and waters of North Carolina were lacking the V. vulnificus population studied for decades. Strikingly, the apparent loss of detectable V. vulnificus coincided with the most severe drought in the history of North Carolina. The drought continued until the end of 2009, with an elevated water column salinity being observed throughout this period and with V. vulnificus being nearly nonexistent. When salinities returned to normal after the drought abated in 2010, we were again able to routinely isolate V. vulnificus from the water column, although we were still unable to culture it from oysters. We suggest that the oysters were colonized with a more salt-tolerant bacterium during the drought, which displaced V. vulnificus and may be preventing recolonization. PMID:22447591

Apparent loss of Vibrio vulnificus from North Carolina oysters coincides with a drought-induced increase in salinity.

PubMed

Froelich, Brett A; Williams, Tiffany C; Noble, Rachel T; Oliver, James D

2012-06-01

Despite years of successful isolation of Vibrio vulnificus from estuarine waters, beginning in 2007, it was extremely difficult to culture V. vulnificus from either North Carolina estuarine water or oyster samples. After employing culture-based methods as well as PCR and quantitative PCR for the detection of V. vulnificus, always with negative results, we concluded that this pathogen had become nearly undetectable in the North Carolina estuarine ecosystem. We ensured that the techniques were sound by seeding North Carolina oysters with V. vulnificus and performing the same tests as those previously conducted on unadulterated oysters. V. vulnificus was readily detected in the seeded oysters using both classes of methods. Furthermore, oysters were obtained from the Gulf of Mexico, and V. vulnificus was easily isolated, confirming that the methodology was sound but that the oysters and waters of North Carolina were lacking the V. vulnificus population studied for decades. Strikingly, the apparent loss of detectable V. vulnificus coincided with the most severe drought in the history of North Carolina. The drought continued until the end of 2009, with an elevated water column salinity being observed throughout this period and with V. vulnificus being nearly nonexistent. When salinities returned to normal after the drought abated in 2010, we were again able to routinely isolate V. vulnificus from the water column, although we were still unable to culture it from oysters. We suggest that the oysters were colonized with a more salt-tolerant bacterium during the drought, which displaced V. vulnificus and may be preventing recolonization.

Neuropeptides encoded by the genomes of the Akoya pearl oyster Pinctata fucata and Pacific oyster Crassostrea gigas: a bioinformatic and peptidomic survey.

PubMed

Stewart, Michael J; Favrel, Pascal; Rotgans, Bronwyn A; Wang, Tianfang; Zhao, Min; Sohail, Manzar; O'Connor, Wayne A; Elizur, Abigail; Henry, Joel; Cummins, Scott F

2014-10-02

Oysters impart significant socio-ecological benefits from primary production of food supply, to estuarine ecosystems via reduction of water column nutrients, plankton and seston biomass. Little though is known at the molecular level of what genes are responsible for how oysters reproduce, filter nutrients, survive stressful physiological events and form reef communities. Neuropeptides represent a diverse class of chemical messengers, instrumental in orchestrating these complex physiological events in other species. By a combination of in silico data mining and peptide analysis of ganglia, 74 putative neuropeptide genes were identified from genome and transcriptome databases of the Akoya pearl oyster, Pinctata fucata and the Pacific oyster, Crassostrea gigas, encoding precursors for over 300 predicted bioactive peptide products, including three newly identified neuropeptide precursors PFGx8amide, RxIamide and Wx3Yamide. Our findings also include a gene for the gonadotropin-releasing hormone (GnRH) and two egg-laying hormones (ELH) which were identified from both oysters. Multiple sequence alignments and phylogenetic analysis supports similar global organization of these mature peptides. Computer-based peptide modeling of the molecular tertiary structures of ELH highlights the structural homologies within ELH family, which may facilitate ELH activity leading to the release of gametes. Our analysis demonstrates that oysters possess conserved molluscan neuropeptide domains and overall precursor organization whilst highlighting many previously unrecognized bivalve idiosyncrasies. This genomic analysis provides a solid foundation from which further studies aimed at the functional characterization of these molluscan neuropeptides can be conducted to further stimulate advances in understanding the ecology and cultivation of oysters.

Assessing shoreline exposure and oyster habitat suitability maximizes potential success for sustainable shoreline protection using restored oyster reefs

USGS Publications Warehouse

LaPeyre, Megan K.; Serra, Kayla; Joyner, T. Andrew; Humphries, Austin T.

2015-01-01

Oyster reefs provide valuable ecosystem services that contribute to coastal resilience. Unfortunately, many reefs have been degraded or removed completely, and there are increased efforts to restore oysters in many coastal areas. In particular, much attention has recently been given to the restoration of shellfish reefs along eroding shorelines to reduce erosion. Such fringing reef approaches, however, often lack empirical data to identify locations where reefs are most effective in reducing marsh erosion, or fully take into account habitat suitability. Using monitoring data from 5 separate fringing reef projects across coastal Louisiana, we quantify shoreline exposure (fetch + wind direction + wind speed) and reef impacts on shoreline retreat. Our results indicate that fringing oyster reefs have a higher impact on shoreline retreat at higher exposure shorelines. At higher exposures, fringing reefs reduced marsh edge erosion an average of 1.0 m y−1. Using these data, we identify ranges of shoreline exposure values where oyster reefs are most effective at reducing marsh edge erosion and apply this knowledge to a case study within one Louisiana estuary. In Breton Sound estuary, we calculate shoreline exposure at 500 random points and then overlay a habitat suitability index for oysters. This method and the resulting visualization show areas most likely to support sustainable oyster populations as well as significantly reduce shoreline erosion. Our results demonstrate how site selection criteria, which include shoreline exposure and habitat suitability, are critical to ensuring greater positive impacts and longevity of oyster reef restoration projects.

Overview and comparison of lipid-containing semipermeable membrane devices and oysters (Crassostrea gigas) for assessing organic chemical exposure

USGS Publications Warehouse

Huckins, J.N.; Prest, H.F.; Petty, J.D.; Lebo, J.A.; Hodgins, M.M.; Clark, R.C.; Alvarez, D.A.; Gala, W.R.; Steen, A.; Gale, R.; Ingersoll, C.G.

2004-01-01

We performed 20-d, flow-through exposures of lipid-containing semipermeable membrane devices (SPMDs) and Pacific oysters (Crassostrea gigas) to three concentrations (nominally 10, 100, and 250 ng/L) of a diverse mixture of polycyclic aromatic hydrocarbons (PAHs). Exposure water was seawater free of particulates larger than 0.1 μm. The results of these controlled laboratory studies demonstrated that SPMDs and oysters concentrate the same chemicals but that the relative amounts accumulated are different. For oysters, the 20-d mean (across treatments) concentration factors (CFs) of test compounds with log Kow ≤ 4.8 were much lower (4.0- to 20-fold lower) than those of the same compounds in SPMDs. In contrast, the 20-d CFs of PAHs with log Kow ≥ 5.6 in oysters from the low-level treatment were higher than the corresponding CFs for SPMDs. The CFs of these compounds in oysters from the low-level treatment ranged from approximately 3.0- to 13-fold higher than those in oysters from the high-level treatment. This physiologically mediated difference in oyster CFs appears to be linked to active feeding in the low-level treatment and to apparent toxicity-induced cessation of feeding (i.e., valve closure) in the high-level treatment. Because CFs for these compounds in oysters were not independent of exposure concentrations, it follows that tissue levels were not proportional to exposure concentration. However, both sampling approaches have advantages and disadvantages, and the appropriateness of their use depends on the goals of a given study.

Delineating baseflow contribution areas for streams - A model and methods comparison

NASA Astrophysics Data System (ADS)

Chow, Reynold; Frind, Michael E.; Frind, Emil O.; Jones, Jon P.; Sousa, Marcelo R.; Rudolph, David L.; Molson, John W.; Nowak, Wolfgang

2016-12-01

This study addresses the delineation of areas that contribute baseflow to a stream reach, also known as stream capture zones. Such areas can be delineated using standard well capture zone delineation methods, with three important differences: (1) natural gradients are smaller compared to those produced by supply wells and are therefore subject to greater numerical errors, (2) stream discharge varies seasonally, and (3) stream discharge varies spatially. This study focuses on model-related uncertainties due to model characteristics, discretization schemes, delineation methods, and particle tracking algorithms. The methodology is applied to the Alder Creek watershed in southwestern Ontario. Four different model codes are compared: HydroGeoSphere, WATFLOW, MODFLOW, and FEFLOW. In addition, two delineation methods are compared: reverse particle tracking and reverse transport, where the latter considers local-scale parameter uncertainty by using a macrodispersion term to produce a capture probability plume. The results from this study indicate that different models can calibrate acceptably well to the same data and produce very similar distributions of hydraulic head, but can produce different capture zones. The stream capture zone is found to be highly sensitive to the particle tracking algorithm. It was also found that particle tracking by itself, if applied to complex systems such as the Alder Creek watershed, would require considerable subjective judgement in the delineation of stream capture zones. Reverse transport is an alternative and more reliable approach that provides probability intervals for the baseflow contribution areas, taking uncertainty into account. The two approaches can be used together to enhance the confidence in the final outcome.

Transmission of the haplosporidian parasite MSX Haplosporidium nelsoni to the eastern oyster Crassostrea virginica in an upweller system.

PubMed

Sunila, I; Karolus, J; Lang, E P; Mroczka, M E; Volk, J

2000-08-31

The haplosporidian oyster parasite MSX (Multinucleated Sphere X) Haplosporidium nelsoni was transmitted to eastern oysters Crassostrea virginica. Hatchery-raised, MSX-free juvenile oysters were placed in upweller tanks. Water to the tanks was filtered through a screen with 1 mm2 openings and originated from the water column overlaying naturally infected oysters beds (MSX prevalence 17 to 57%). MSX was diagnosed by histopathological analysis. MSX-disease (57% prevalence) with increased mortality (19%) was observed 11 wk after the beginning of the exposure and mortality of 80% after 16 wk. The study demonstrates transmission of MSX via water-borne infectious agents capable of passing through a 1 mm filter.

[Monitoring of trace elements in oysters marketed in Recife, Pernambuco, Brazil].

PubMed

Cavalcanti, André Dias

2003-01-01

Samples of oysters marketed in Recife, Pernambuco, Brazil, were monitored for the concentration of trace elements (Hg, Zn, Fe, Cu, and Mn) for one year (from March 2001 to February 2002). Mercury was the principal contaminant found in oysters and the element posing the greatest public health risk. Mercury levels in oysters reached 551.12 g/kg (wet weight). These values suggest that oyster consumption should be restricted, especially among communities that gather them as a subsistence activity, as well as by children and pregnant women. Evaluation of mercury concentration in seafood is an important factor for assessing the risk of contamination among individuals who are not occupationally exposed.

Spatial partitioning and asymmetric hybridization among sympatric coastal steelhead trout (Oncorhynchus mykiss irideus), coastal cutthroat trout (O. clarki clarki) and interspecific hybrids

USGS Publications Warehouse

Ostberg, C.O.; Slatton, S.L.; Rodriguez, R.J.

2004-01-01

Hybridization between sympatric species provides unique opportunities to examine the contrast between mechanisms that promote hybridization and maintain species integrity. We surveyed hybridization between sympatric coastal steelhead (Oncorhynchus mykiss irideus) and coastal cutthroat trout (O. clarki clarki) from two streams in Washington State, Olsen Creek (256 individuals sampled) and Jansen Creek (431 individuals sampled), over a 3-year period. We applied 11 O. mykiss-specific nuclear markers, 11 O. c. clarki-specific nuclear markers and a mitochondrial DNA marker to assess spatial partitioning among species and hybrids and determine the directionality of hybridization. F1 and post-F1 hybrids, respectively, composed an average of 1.2% and 33.6% of the population sampled in Jansen Creek, and 5.9% and 30.4% of the population sampled in Olsen Creek. A modest level of habitat partitioning among species and hybrids was detected. Mitochondrial DNA analysis indicated that all F 1 hybrids (15 from Olsen Creek and five from Jansen Creek) arose from matings between steelhead females and cutthroat males implicating a sneak spawning behaviour by cutthroat males. First-generation cutthroat backcrosses contained O. c. clarki mtDNA more often than expected suggesting natural selection against F1 hybrids. More hybrids were backcrossed toward cutthroat than steelhead and our results indicate recurrent hybridization within these creeks. Age analysis demonstrated that hybrids were between 1 and 4 years old. These results suggest that within sympatric salmonid hybrid zones, exogenous processes (environmentally dependent factors) help to maintain the distinction between parental types through reduced fitness of hybrids within parental environments while divergent natural selection promotes parental types through distinct adaptive advantages of parental phenotypes.

Age of the Lava Creek supereruption and magma chamber assembly at Yellowstone based on 40Ar/39Ar and U-Pb dating of sanidine and zircon crystals

USGS Publications Warehouse

Matthews, Naomi E.; Vazquez, Jorge A.; Calvert, Andrew T.

2015-01-01

The last supereruption from the Yellowstone Plateau formed Yellowstone caldera and ejected the >1000 km3 of rhyolite that composes the Lava Creek Tuff. Tephra from the Lava Creek eruption is a key Quaternary chronostratigraphic marker, in particular for dating the deposition of mid Pleistocene glacial and pluvial deposits in western North America. To resolve the timing of eruption and crystallization history for the Lava Creek magma, we performed (1) 40Ar/39Ar dating of single sanidine crystals to delimit eruption age and (2) ion microprobe U-Pb and trace-element analyses of the crystal faces and interiors of single zircons to date the interval of zircon crystallization and characterize magmatic evolution. Sanidines from the two informal members composing Lava Creek Tuff yield a preferred 40Ar/39Ar isochron date of 631.3 ± 4.3 ka. Crystal faces on zircons from both members yield a weighted mean 206Pb/238U date of 626.5 ± 5.8 ka, and have trace element concentrations that vary with the eruptive stratigraphy. Zircon interiors yield a mean 206Pb/238U date of 659.8 ± 5.5 ka, and reveal reverse and/or oscillatory zoning of trace element concentrations, with many crystals containing high U concentration cores that likely grew from highly evolved melt. The occurrence of distal Lava Creek tephra in stratigraphic sequences marking the Marine Isotope Stage 16–15 transition supports the apparent eruption age of ∼631 ka. The combined results reveal that Lava Creek zircons record episodic heating, renewed crystallization, and an overall up-temperature evolution for Yellowstone's subvolcanic reservoir in the 103−104 year interval before eruption.

Species Profiles. Life Histories and Environmental Requirements of Coastal Fishes and Invertebrates (Mid-Atlantic). American Oyster.

DTIC Science & Technology

1986-07-01

umbones are usually straight. extends to the Yucatan Peninsula Single oysters from hard substrates of Mexico and the West Indies to are rounded and...season (Merrill and Boss postulated that phytoplankton blooms 1966). Kennedy and Krantz (1982) and nutrition may be responsible for documented the... nutritional factors which affect tidal American oyster Crassostrea the growth and setting of the virygnica (Gmelin). Ph.D. Thesis. larvae of the oyster

Analysis of Stomach and Gut Microbiomes of the Eastern Oyster (Crassostrea virginica) from Coastal Louisiana, USA

PubMed Central

King, Gary M.; Judd, Craig; Kuske, Cheryl R.; Smith, Conor

2012-01-01

We used high throughput pyrosequencing to characterize stomach and gut content microbiomes of Crassostrea virginica, the Easter oyster, obtained from two sites, one in Barataria Bay (Hackberry Bay) and the other in Terrebonne Bay (Lake Caillou), Louisiana, USA. Stomach microbiomes in oysters from Hackberry Bay were overwhelmingly dominated by Mollicutes most closely related to Mycoplasma; a more rich community dominated by Planctomyctes occurred in Lake Caillou oyster stomachs. Gut communities for oysters from both sites differed from stomach communities, and harbored a relatively diverse assemblage of phylotypes. Phylotypes most closely related to Shewanella and a Chloroflexi strain dominated the Lake Caillou and Hackberry Bay gut microbiota, respectively. While many members of the stomach and gut microbiomes appeared to be transients or opportunists, a putative core microbiome was identified based on phylotypes that occurred in all stomach or gut samples only. The putative core stomach microbiome comprised 5 OTUs in 3 phyla, while the putative core gut microbiome contained 44 OTUs in 12 phyla. These results collectively revealed novel microbial communities within the oyster digestive system, the functions of the oyster microbiome are largely unknown. A comparison of microbiomes from Louisiana oysters with bacterial communities reported for other marine invertebrates and fish indicated that molluscan microbiomes were more similar to each other than to microbiomes of polychaetes, decapods and fish. PMID:23251548

Role and Value of Nitrogen Regulation Provided by Oysters (Crassostrea virginica) in the Mission-Aransas Estuary, Texas, USA

PubMed Central

Beseres Pollack, Jennifer; Yoskowitz, David; Kim, Hae-Cheol; Montagna, Paul A.

2013-01-01

Suspension-feeding activities of oysters impart a potentially significant benefit to estuarine ecosystems via reduction of water column nutrients, plankton and seston biomass, and primary productivity which can have a significant impact on human well-being. This study considered nitrogen regulation by eastern oysters Crassostrea virginica in the Mission-Aransas Estuary, Texas, USA, as a function of denitrification, burial, and physical transport from the system via harvest. Oyster reefs were estimated to remove 502.5 kg N km−2 through denitrification of biodeposits and 251.3 kg N km−2 in burial of biodeposits to sediments. Nitrogen is also physically transported out of the estuary via harvest of oysters. Commercial harvest of oysters in the Mission-Aransas Estuary can remove approximately 21,665 kg N per year via physical transport from the system. We developed a transferable method to value the service of nitrogen regulation by oysters, where the potential cost equivalent value of nitrogen regulation is quantified via cost estimates for a constructed biological nutrient removal (BNR) supplement to a wastewater treatment plant. The potential annual engineered cost equivalent of the service of nitrogen regulation and removal provided by reefs in the Mission-Aransas Estuary is $293,993 yr−1. Monetizing ecosystem services can help increase awareness at the stakeholder level of the importance of oysters beyond commercial fishery values alone. PMID:23762341

Predicting the effects of proposed Mississippi River diversions on oyster habitat quality; application of an oyster habitat suitability index model

USGS Publications Warehouse

Soniat, Thomas M.; Conzelmann, Craig P.; Byrd, Jason D.; Roszell, Dustin P.; Bridevaux, Joshua L.; Suir, Kevin J.; Colley, Susan B.

2013-01-01

In an attempt to decelerate the rate of coastal erosion and wetland loss, and protect human communities, the state of Louisiana developed its Comprehensive Master Plan for a Sustainable Coast. The master plan proposes a combination of restoration efforts including shoreline protection, marsh creation, sediment diversions, and ridge, barrier island, and hydrological restoration. Coastal restoration projects, particularly the large-scale diversions of fresh water from the Mississippi River, needed to supply sediment to an eroding coast potentially impact oyster populations and oyster habitat. An oyster habitat suitability index model is presented that evaluates the effects of a proposed sediment and freshwater diversion into Lower Breton Sound. Voluminous freshwater, needed to suspend and broadly distribute river sediment, will push optimal salinities for oysters seaward and beyond many of the existing reefs. Implementation and operation of the Lower Breton Sound diversion structure as proposed would render about 6,173 ha of hard bottom immediately east of the Mississippi River unsuitable for the sustained cultivation of oysters. If historical harvests are to be maintained in this region, a massive and unprecedented effort to relocate private leases and restore oyster bottoms would be required. Habitat suitability index model results indicate that the appropriate location for such efforts are to the east and north of the Mississippi River Gulf Outlet.

Analysis of Stomach and Gut Microbiomes of the Eastern Oyster (Crassostrea virginica) from Coastal Louisiana, USA

DOE PAGES

King, Gary M.; Judd, Craig; Kuske, Cheryl R.; ...

2012-12-12

In this paper, we used high throughput pyrosequencing to characterize stomach and gut content microbiomes of Crassostrea virginica, the Easter oyster, obtained from two sites, one in Barataria Bay (Hackberry Bay) and the other in Terrebonne Bay (Lake Caillou), Louisiana, USA. Stomach microbiomes in oysters from Hackberry Bay were overwhelmingly dominated by Mollicutes most closely related to Mycoplasma; a more rich community dominated by Planctomyctes occurred in Lake Caillou oyster stomachs. Gut communities for oysters from both sites differed from stomach communities, and harbored a relatively diverse assemblage of phylotypes. Phylotypes most closely related to Shewanella and a Chloroflexi strainmore » dominated the Lake Caillou and Hackberry Bay gut microbiota, respectively. While many members of the stomach and gut microbiomes appeared to be transients or opportunists, a putative core microbiome was identified based on phylotypes that occurred in all stomach or gut samples only. The putative core stomach microbiome comprised 5 OTUs in 3 phyla, while the putative core gut microbiome contained 44 OTUs in 12 phyla. These results collectively revealed novel microbial communities within the oyster digestive system, the functions of the oyster microbiome are largely unknown. Finally, a comparison of microbiomes from Louisiana oysters with bacterial communities reported for other marine invertebrates and fish indicated that molluscan microbiomes were more similar to each other than to microbiomes of polychaetes, decapods and fish.« less

Interactive effects of water temperature and salinity on growth and mortality of eastern oysters, Crassostrea virginica: A meta-analysis using 40 years of monitoring data

USGS Publications Warehouse

Lowe, Michael R.; Sehlinger, Troy; Soniat, Thomas M.; LaPeyre, Megan K.

2017-01-01

Despite nearly a century of exploitation and scientific study, predicting growth and mortality rates of the eastern oyster (Crassostrea virginica) as a means to inform local harvest and management activities remains difficult. Ensuring that models reflect local population responses to varying salinity and temperature combinations requires locally appropriate models. Using long-term (1988 to 2015) monitoring data from Louisiana's public oyster reefs, we develop regionally specific models of temperature- and salinity-driven mortality (sack oysters only) and growth for spat (<25 mm), seed (25–75 mm), and sack (>75 mm) oyster size classes. The results demonstrate that the optimal combination of temperature and salinity where Louisiana oysters experience reduced mortality and fast growth rates is skewed toward lower salinities and higher water temperatures than previous models have suggested. Outside of that optimal range, oysters are commonly exposed to combinations of temperature and salinity that are correlated with high mortality and reduced growth. How these combinations affect growth, and to a lesser degree mortality, appears to be size class dependent. Given current climate predictions for the region and ongoing large-scale restoration activities in coastal Louisiana, the growth and mortality models are a critical step toward ensuring sustainable oyster reefs for long-term harvest and continued delivery of the ecological services in a changing environment.

[Phylogenetic analysis of tyrosinase gene family in the Pacific oyster (Crassostrea gigas Thunberg)].

PubMed

Yu, Xue; Yu, Hong; Kong, Lingfeng; Li, Qi

2014-02-01

The deduced amino acid sequence characteristics, classification and phylogeny of tyrosinase gene family in the Pacific oyster (Crassostrea gigas Thunberg) were analyzed using bioinformatics methods. The results showed that gene duplication was the major cause of tyrosinase gene expansion in the Pacific oyster. The tyrosinase gene family in the Pacific oyster can be further classified into three types: secreted form (Type A), cytosolic form (Type B) and membrane-bound form (Type C). Based on the topology of the phylogenetic tree of the Pacific oyster tyrosinases, among Type A isoforms, tyr18 seemed divergent from other Type A tyrosinases early, while tyr2 and tyr9 appeared divergent early in Type B. In Type C tyrosinses, tyr8 was divergent early. The cluster of the Pacific oyster tyrosinasesis determined by their classifications and positions in the scaffolds. Further analysis suggested that Type A tyrosinases of C. gigas clustered with those from cephalopods and then with nematodes and cnidarians. Type B tyrosinases were generally clustered with the same type of tyrosinases from molluscas and nematodes, and then with those from platyhelminths, cnidarians and chordates. Type A tyrosinases in the Pacific oyster and the Pearl oyster expanded independently and were divergent from membrane-bound form of tyrosinases in chordata, platyhelminthes and annelida. These observations suggested that Type C tyrosinases in the bivalve had a distinct evolution direction.

Perkinsus beihaiensis (Perkinsozoa) in oysters of Bahia State, Brazil.

PubMed

Luz, M S A; Carvalho, F S; Oliveira, H C; Boehs, G

2018-05-01

This study reports the pathogen Perkinsus beihaiensis in oysters of the genus Crassostrea on the coast of the State of Bahia (Brazil), its prevalence, infection intensity and correlation with salinity. Oysters (n = 240) were collected between October and December 2014 at eight sampling stations between latitudes 13°55'S and 15°42'S. The laboratory procedures included macroscopic analysis, histology, culture in Ray's fluid thioglycollate medium (RFTM), Polymerase Chain Reaction (PCR) and DNA sequencing. PCR and sequencing have been used for the genetic identification of oysters as well. Two species of oysters have been identified: Crassostrea rhizophorae and C. brasiliana. In both oyster species P. beihaiensis was the only Perkinsus species detected. In C. rhizophorae, the average prevalence was 82.8% by histology and 65.2% by RFTM. In C. brasiliana, the prevalences were 70.5% and 35.7%, respectively. The higher prevalence of P. beihaiensis in C. rhizophorae was probably influenced by salinity, with which was positively correlated (r> 0.8). In both oysters, P. beihaiensis was located mainly in the gastric epithelium. The infection was generally mild or moderate, without apparent harm to the hosts, but in cases of severe infection, there was hemocytical reaction and tissue disorganization. The generally high prevalence in the region suggests that oysters should be monitored with respect to this pathogen, especially in growing areas.

Ostreid herpesvirus OsHV-1 μVar in Pacific oysters Crassostrea gigas (Thunberg 1793) of the Wadden Sea, a UNESCO world heritage site.

PubMed

Gittenberger, A; Voorbergen-Laarman, M A; Engelsma, M Y

2016-01-01

The Wadden Sea is an extensive wetland area, recognized as UNESCO world heritage site of international importance. Since the mid-1990s, the invasive Pacific oyster Crassostrea gigas (Thunberg 1793) population in the area has grown exponentially, having a distinct impact on the ecosystem. The recent spread of the emerging oyster pathogen Ostreid herpesvirus OsHV-1 μVar worldwide and specifically in the oyster culture areas in the south of the Netherlands raised the question whether the virus may also be present in the Wadden Sea. In the summer of 2012 juvenile Pacific oysters were collected from five locations in the Dutch Wadden Sea. The virus was shown to be present in three of the five locations by real-time PCR and sequencing. It was concluded that OsHV-1 μVar has settled itself in Pacific oyster reefs in the Wadden Sea. These results and the recent discoveries of OsHV-1 microvariants in Australia and Korea indicate that OsHV-1 μVar and related variants might be more widespread than can be deduced from current literature. In particular in regions with no commercial oyster culture, similar to the Wadden Sea, the virus may go undetected as wild beds with mixed age classes hamper the detection of mortality among juvenile oysters. © 2015 John Wiley & Sons Ltd.

Unusually abundant and large ciliate xenomas in oysters, Crassostrea virginica, from Great Bay, New Hampshire, USA.

PubMed

McGurk, Emily Scarpa; Ford, Susan; Bushek, David

2016-06-01

During routine histological examination of oysters (Crassostrea virginica) from Great Bay, New Hampshire, USA, a high prevalence and intensity of ciliate xenomas has been noted since sampling began in 1997. Xenomas are hypertrophic lesions on the gills of bivalve molluscs caused by intracellular ciliates, likely Sphenophrya sp. Although not known to cause mortality in oysters, xenomas have not previously been reported at this high abundance. The objectives of this study were to characterize the xenomas, describe the ciliates, and gather baseline epizootiological data with correlations to environmental and biological parameters. Upon gross examination, xenomas appeared as white nodules, up to 3mm in diameter, located in the gill tissue and occasionally fusing into large masses along the gill filaments. Light microscopy of histological sections revealed xenomas located in the gill water tubes, which they often completely blocked. Higher magnification revealed dual nuclei, eight kineties, and conjugation of the ciliates. Transmission electron microscopy revealed dual nuclei that varied in density, a maximum of twenty cilia in each kinety radiating from the oral apparatus to the posterior, and a 9+2 axoneme structure within the cilia. These traits place the ciliates into the Order Rhynchodida, but insufficient molecular data exist to confirm classification of this ciliate to the Genus Sphenophrya. Since 1997, xenoma prevalence has fluctuated with peaks in 2000, 2004, and 2011. Infected oysters generally contained <30 xenomas, but 2.1% contained >100, sharply contrasting the rare prevalence and low intensity reported elsewhere. Prevalence increased with oyster size, leveling off near 50% in oysters >60mm. Infection intensity peaked in 70-90mm oysters and declined in larger oysters. Individual oyster condition was not associated with xenoma intensity, but sites with oysters in higher condition generally had a greater prevalence and intensity of xenoma infections. Seasonal data indicated an infection cycle increasing from summer to fall, peaking at 55-65% in November and dropping to <10% by spring. The oyster population in Great Bay, NH warrants further examination to understand the mechanisms and conditions controlling xenoma formation. Copyright © 2016 Elsevier Inc. All rights reserved.

Influence of water temperature and salinity on Vibrio vulnificus in Northern Gulf and Atlantic Coast oysters (Crassostrea virginica).

PubMed

Motes, M L; DePaola, A; Cook, D W; Veazey, J E; Hunsucker, J C; Garthright, W E; Blodgett, R J; Chirtel, S J

1998-04-01

This study investigated the temperature and salinity parameters associated with waters and oysters linked to food-borne Vibrio vulnificus infections. V. vulnificus was enumerated in oysters collected at three northern Gulf Coast sites and two Atlantic Coast sites from July 1994 through September 1995. Two of these sites, Black Bay, La., and Apalachicola Bay, Fla., are the source of the majority of the oysters implicated in V. vulnificus cases. Oysters in all Gulf Coast sites exhibited a similar seasonal distribution of V. vulnificus: a consistently large number (median concentration, 2,300 organisms [most probable number] per g of oyster meat) from May through October followed by a gradual reduction during November and December to < or = 10 per g, where it remained from January through mid-March, and a sharp increase in late March and April to summer levels. V. vulnificus was undetectable (< 3 per g) in oysters from the North and South Carolina sites for most of the year. An exception occurred when a late-summer flood caused a drop in salinity in the North Carolina estuary, apparently causing V. vulnificus numbers to increase briefly to Gulf Coast levels. At Gulf Coast sites, V. vulnificus numbers increased with water temperatures up to 26 degrees C and were constant at higher temperatures. High V. vulnificus levels (> 10(3) per g) were typically found in oysters from intermediate salinities (5 to 25 ppt). Smaller V. vulnificus numbers (< 10(2) per g) were found at salinities above 28 ppt, typical of Atlantic Coast sites. On 11 occasions oysters were sampled at times and locations near the source of oysters implicated in 13 V. vulnificus cases; the V. vulnificus levels and environmental parameters associated with these samples were consistent with those of other study samples collected from the Gulf Coast from April through November. These findings suggest that the hazard of V. vulnificus infection is not limited to brief periods of unusual abundance of V. vulnificus in Gulf Coast oysters or to environmental conditions that are unusual to Gulf Coast estuaries.

Influence of Water Temperature and Salinity on Vibrio vulnificus in Northern Gulf and Atlantic Coast Oysters (Crassostrea virginica)

PubMed Central

Motes, M. L.; DePaola, A.; Cook, D. W.; Veazey, J. E.; Hunsucker, J. C.; Garthright, W. E.; Blodgett, R. J.; Chirtel, S. J.

1998-01-01

This study investigated the temperature and salinity parameters associated with waters and oysters linked to food-borne Vibrio vulnificus infections. V. vulnificus was enumerated in oysters collected at three northern Gulf Coast sites and two Atlantic Coast sites from July 1994 through September 1995. Two of these sites, Black Bay, La., and Apalachicola Bay, Fla., are the source of the majority of the oysters implicated in V. vulnificus cases. Oysters in all Gulf Coast sites exhibited a similar seasonal distribution of V. vulnificus: a consistently large number (median concentration, 2,300 organisms [most probable number] per g of oyster meat) from May through October followed by a gradual reduction during November and December to ≤10 per g, where it remained from January through mid-March, and a sharp increase in late March and April to summer levels. V. vulnificus was undetectable (<3 per g) in oysters from the North and South Carolina sites for most of the year. An exception occurred when a late-summer flood caused a drop in salinity in the North Carolina estuary, apparently causing V. vulnificus numbers to increase briefly to Gulf Coast levels. At Gulf Coast sites, V. vulnificus numbers increased with water temperatures up to 26°C and were constant at higher temperatures. High V. vulnificus levels (>103 per g) were typically found in oysters from intermediate salinities (5 to 25 ppt). Smaller V. vulnificus numbers (<102 per g) were found at salinities above 28 ppt, typical of Atlantic Coast sites. On 11 occasions oysters were sampled at times and locations near the source of oysters implicated in 13 V. vulnificus cases; the V. vulnificus levels and environmental parameters associated with these samples were consistent with those of other study samples collected from the Gulf Coast from April through November. These findings suggest that the hazard of V. vulnificus infection is not limited to brief periods of unusual abundance of V. vulnificus in Gulf Coast oysters or to environmental conditions that are unusual to Gulf Coast estuaries. PMID:9546182

RESPONSES OF OYSTER (CRASSOSTREA VIRGINICA) HEMOCYTES TO NONPATHOGENIC AND CLINICAL ISOLATES OF VIBRIO PARAHAEMOLYTICUS

EPA Science Inventory

Bacterial uptake by oysters (Crassostrea virginica) and bactericidal activity of oyster hemocytes were studied using four environmental isolates and three clinical isolates of Vibrio parahaemolyticus. Clinical isolates (2030, 2062, 2107) were obtained from gastroenteritis patien...

CAN OYSTERS PLAY A ROLE IN ENVIRONMENTAL MANAGEMENT?

EPA Science Inventory

The culinary and commercial value of oysters is widely recognized but, until recently, their ecological importance has been largely overlooked. Field and laboratory studies have begun to explore how filter-feeding and reef building by oysters can influence nutrient cycling, biodi...

Climate Change, Precipitation and Impacts on an Estuarine Refuge from Disease

PubMed Central

Levinton, Jeffrey; Doall, Michael; Ralston, David; Starke, Adam; Allam, Bassem

2011-01-01

Background Oysters play important roles in estuarine ecosystems but have suffered recently due to overfishing, pollution, and habitat loss. A tradeoff between growth rate and disease prevalence as a function of salinity makes the estuarine salinity transition of special concern for oyster survival and restoration. Estuarine salinity varies with discharge, so increases or decreases in precipitation with climate change may shift regions of low salinity and disease refuge away from optimal oyster bottom habitat, negatively impacting reproduction and survival. Temperature is an additional factor for oyster survival, and recent temperature increases have increased vulnerability to disease in higher salinity regions. Methodology/Principal Findings We examined growth, reproduction, and survival of oysters in the New York Harbor-Hudson River region, focusing on a low-salinity refuge in the estuary. Observations were during two years when rainfall was above average and comparable to projected future increases in precipitation in the region and a past period of about 15 years with high precipitation. We found a clear tradeoff between oyster growth and vulnerability to disease. Oysters survived well when exposed to intermediate salinities during two summers (2008, 2010) with moderate discharge conditions. However, increased precipitation and discharge in 2009 reduced salinities in the region with suitable benthic habitat, greatly increasing oyster mortality. To evaluate the estuarine conditions over longer periods, we applied a numerical model of the Hudson to simulate salinities over the past century. Model results suggest that much of the region with suitable benthic habitat that historically had been a low salinity refuge region may be vulnerable to higher mortality under projected increases in precipitation and discharge. Conclusions/Significance Predicted increases in precipitation in the northeastern United States due to climate change may lower salinities past important thresholds for oyster survival in estuarine regions with appropriate substrate, potentially disrupting metapopulation dynamics and impeding oyster restoration efforts, especially in the Hudson estuary where a large basin constitutes an excellent refuge from disease. PMID:21552552

Controlling Vibrio vulnificus and spoilage bacteria in fresh shucked oysters using natural antimicrobials.

PubMed

Mahmoud, B S M

2014-01-01

This study evaluated the efficacy of grape seed extract (GE), citric acid (CA) and lactic acid (LA) on the inactivation of Vibrio vulnificus and inherent microflora in fresh shucked oysters. The minimum inhibitory concentration (MIC) of GE, CA or LA against V. vulnificus was determined. Furthermore, the shucked oysters were artificially inoculated with V. vulnificus. The inoculated shucked oysters (25 g) were then dipped in 250 ml GE, CA or LA solutions for 10 min. The population of V. vulnificus in shucked oysters was determined. The effects of the treatments with GE, CA or LA solutions on the inherent microbiota in fresh shucked oysters during storage at 5°C for 20 days were also studied. The MICs of GE, CA or LA against V. vulnificus were 10.0, 5.0 or 1.0 mg ml(-1), respectively. The concentrations of 500, 300 or 150 mg ml(-1) GE, CA or LA solutions were needed to reduce the population of V. vulnificus to below the detection level (1.0 log g(-1)). Treatment with 500, 300, 150 mg ml(-1) GE, CA or LA significantly reduced the initial inherent microbiota in fresh shucked oysters, and inherent levels were significantly (P < 0.05) lower than the control sample throughout refrigerated storage for 20 days. Oysters filter large volume of seawater during their feeding activities that concentrate bacteria such as Vibrio vulnificus in their body. The presence of V. vulnificus in oysters has a serious impact on public health and international trade. There is increasing concern over the use of chemical preservatives. Furthermore, the food industry is looking for new natural preservation methods. This study indicated that lactic acid and citric acid wash solutions could offer an inexpensive, natural and strong approach to control V. vulnificus and spoilage bacteria in fresh shucked for the oyster industry. © 2013 The Society for Applied Microbiology.

High salinity relay as a post-harvest processing method for reducing Vibrio vulnificus levels in oysters (Crassostrea virginica).

PubMed

Audemard, Corinne; Kator, Howard I; Reece, Kimberly S

2018-08-20

High salinity relay of Eastern oysters (Crassostrea virginica) was evaluated as a post-harvest processing (PHP) method for reducing Vibrio vulnificus. This approach relies on the exposure of oysters to natural high salinity waters and preserves a live product compared to previously approved PHPs. Although results of prior studies evaluating high salinity relay as a means to decrease V. vulnificus levels were promising, validation of this method as a PHP following approved guidelines is required. This study was designed to provide data for validation of this method following Food and Drug Administration (FDA) PHP validation guidelines. During each of 3 relay experiments, oysters cultured from 3 different Chesapeake Bay sites of contrasting salinities (10-21 psu) were relayed without acclimation to high salinity waters (31-33 psu) for up to 28 days. Densities of V. vulnificus and densities of total and pathogenic Vibrio parahaemolyticus (as tdh positive strains) were measured using an MPN-quantitative PCR approach. Overall, 9 lots of oysters were relayed with 6 exhibiting initial V. vulnificus >10,000/g. As recommended by the FDA PHP validation guidelines, these lots reached both the 3.52 log reduction and the <30 MPN/g densities requirements for V. vulnificus after 14 to 28 days of relay. Densities of total and pathogenic V. parahaemolyticus in relayed oysters were significantly lower than densities at the sites of origin suggesting an additional benefit associated with high salinity relay. While relay did not have a detrimental effect on oyster condition, oyster mortality levels ranged from 2 to 61% after 28 days of relay. Although the identification of the factors implicated in oyster mortality will require further examination, this study strongly supports the validation of high salinity relay as an effective PHP method to reduce levels of V. vulnificus in oysters to endpoint levels approved for human consumption. Copyright © 2018 Elsevier B.V. All rights reserved.

The Effects of Storage Temperature on the Growth of Vibrio parahaemolyticus and Organoleptic Properties in Oysters.

PubMed

Mudoh, Meshack Fon; Parveen, Salina; Schwarz, Jurgen; Rippen, Tom; Chaudhuri, Anish

2014-01-01

During harvesting and storage, microbial pathogens and natural spoilage flora may grow, negatively affecting the composition and texture of oysters and posing a potential health threat to susceptible consumers. A solution to these problems would mitigate associated damaging effects on the seafood industry. The purpose of this study was to investigate the effects of storage temperature on growth of vibrios as well as other microbial, sensory, and textural characteristics of post-harvest shellstock Eastern oysters (Crassostrea virginica). Oysters harvested from the Chesapeake Bay, Maryland, during summer months (June, July, and August, 2010) were subjected to three storage temperatures (5, 10, and 20°C) over a 10-day period. At selected time intervals (0, 1, 3, 7, and 10 days), two separate samples of six oysters each were homogenated and analyzed for pH, halophilic plate counts (HPC), total vibrios, and Vibrio parahaemolyticus (Vp). Oyster meats shucked after storage were also organoleptically evaluated (acceptability, appearance, and odor). Texture analysis was performed using a texture analyzer on meats shucked from oysters held under the same conditions. The pH of the oyster homogenates showed no consistent pattern with storage time and temperature. The HPC (4.5-9.4 log CFU/g) were highest on day 7 at 20°C while olfactory acceptance reduced with time and increasing storage temperatures. The Vp counts increased over time from 3.5 to 7.5 log MPN/g by day 10. Loss of freshness as judged by appearance and odor was significant over time (p < 0.05). Toughness of oysters increased with storage time at 5 and 10°C from days 1 to 3 but was inconsistent after day 7. The results indicate that the length of storage and temperature had a significant effect on bacterial counts and olfactory acceptance of oysters but had an inconsistent effect on texture.

Preliminary report on the geology, geophysics and hydrology of USBM/AEC Colorado core hole No. 2, Piceance Creek Basin, Rio Blanco County, Colorado

USGS Publications Warehouse

Ege, J.R.; Carroll, R.D.; Welder, F.A.

1967-01-01

Approximately 1,400 feet of continuous core was taken .between 800-2,214 feet in depth from USBM/AEC Colorado core hole No. 2. The drill, site is located in the Piceance Creek basin, Rio Blanco County, Colorado. From ground surface the drill hole penetrated 1,120 feet of the Evacuation Creek Member and 1,094 feet of oil shale in the Parachute Creek Member of the Green River Formation. Oil shale yielding more than 20 gallons per ton occurs between 1,260-2,214 feet in depth. A gas explosion near the bottom of the hole resulted in abandonment of the exploratory hole which was still in oil shale. The top of the nahcolite zone is at 1,693 feet. Below this depth the core contains common to abundant amounts of sodium bicarbonate salt intermixed with oil shale. The core is divided into seven structural zones that reflect changes in joint intensity, core loss and broken core due to natural causes. The zone of poor core recovery is in the Interval between 1,300-1,450 feet. Results of preliminary geophysical log analyses indicate that oil yields determined by Fischer assay compare favorably with yields determined by geophysical log analyses. There is strong evidence that analyses of complete core data from Colorado core holes No. 1 and No. 2 reveal a reliable relationship between geophysical log response and oil yield. The quality of the logs is poor in the rich shale section and the possibility of repeating the logging program should be considered. Observations during drilling, coring, and hydrologic testing of USBM/AEC Colorado core hole No. 2 reveal that the Parachute Creek Member of the Green River Formation is the principal aquifer water in the Parachute Creek Member is under artesian pressure. The upper part of the aquifer has a higher hydrostatic head than, and is hydrologically separated from the lower part of the aquifer. The transmissibility of the aquifer is about 3500 gpd per foot. The maximum water yield of the core hole during testing was about 500 gpm. Chemical analyses of water samples indicate that the content of dissolved solids is low, the principal ions being sodium and bicarbonate. Although the hole was originally cored, to a depth of 2,214 feet, ,the present depth is about 2,100 feet. This report presents a preliminary evaluation of core examination, geophysical log interpretation and hydrological tests from the USBM/AEC Colorado core hole No. 2. The cooperation of the U.S. Bureau of Mines is gratefully acknowledged. The reader is referred to Carroll and others (1967) for comparison of USBM/AEC Col0rado core hole No. 1 with USBM/AEC Colorado core hole No. 2.

The modulation role of serotonin in Pacific oyster Crassostrea gigas in response to air exposure.

PubMed

Dong, Wenjing; Liu, Zhaoqun; Qiu, Limei; Wang, Weilin; Song, Xiaorui; Wang, Xiudan; Li, Yiqun; Xin, Lusheng; Wang, Lingling; Song, Linsheng

2017-03-01

Serotonin, also known as 5-hydroxytryptamine (5-HT), is a critical neurotransmitter in the neuroendocrine-immune regulatory network and involved in regulation of the stress response in vertebrates and invertebrates. In the present study, serotonin was found to be widely distributed in the tissues of Pacific oyster Crassostrea gigas, including haemolymph, gonad, visceral ganglion, mantle, gill, labial palps and hepatopancreas, and its concentration increased significantly in haemolymph and mantle after the oysters were exposed to air for 1 d. The apoptosis rate of haemocytes was significantly declined after the oysters received an injection of extra serotonin, while the activity of superoxide dismutase (SOD) in haemolymph increased significantly. After the stimulation of serotonin during air exposure, the apoptosis rate of oyster haemocytes and the concentration of H 2 O 2 in haemolymph were significantly decreased, while the SOD activity was significantly elevated. Furthermore, the survival rate of oysters from 4 th to 6 th d after injection of serotonin was higher than that of FSSW group and air exposure group. The results clearly indicated that serotonin could modulate apoptotic effect and redox during air exposure to protect oysters from stress. Copyright © 2017 Elsevier Ltd. All rights reserved.

Copper and zinc contamination in oysters: subcellular distribution and detoxification.

PubMed

Wang, Wen-Xiong; Yang, Yubo; Guo, Xiaoyu; He, Mei; Guo, Feng; Ke, Caihuan

2011-08-01

Metal pollution levels in estuarine and coastal environments have been widely reported, but few documented reports exist of severe contamination in specific environments. Here, we report on a metal-contaminated estuary in Fujian Province, China, in which blue oysters (Crassostrea hongkongensis) and green oysters (Crassostrea angulata) were discovered to be contaminated with Cu and other metals. Extraordinarily high metal concentrations were found in the oysters collected from the estuary. Comparison with historical data suggests that the estuary has recently been contaminated with Cr, Cu, Ni, and Zn. Metal concentrations in blue oysters were as high as 1.4 and 2.4% of whole-body tissue dry wt for Cu and Zn, respectively. Cellular debris was the main subcellular fraction binding the metals, but metal-rich granules were important for Cr, Ni, and Pb. With increasing Cu accumulation, its partitioning into the cytosolic proteins decreased. In contrast, metallothionein-like proteins increased their importance in binding with Zn as tissue concentrations of Zn increased. In the most severely contaminated oysters, only a negligible fraction of their Cu and Zn was bound with the metal-sensitive fraction, which may explain the survival of oysters in such contaminated environments. Copyright © 2011 SETAC.

Preliminary stochastic model for managing Vibrio parahaemolyticus and total viable bacterial counts in a Pacific oyster (Crassostrea gigas) supply chain.

PubMed

Fernandez-Piquer, Judith; Bowman, John P; Ross, Tom; Estrada-Flores, Silvia; Tamplin, Mark L

2013-07-01

Vibrio parahaemolyticus can accumulate and grow in oysters stored without refrigeration, representing a potential food safety risk. High temperatures during oyster storage can lead to an increase in total viable bacteria counts, decreasing product shelf life. Therefore, a predictive tool that allows the estimation of both V. parahaemolyticus populations and total viable bacteria counts in parallel is needed. A stochastic model was developed to quantitatively assess the populations of V. parahaemolyticus and total viable bacteria in Pacific oysters for six different supply chain scenarios. The stochastic model encompassed operations from oyster farms through consumers and was built using risk analysis software. Probabilistic distributions and predictions for the percentage of Pacific oysters containing V. parahaemolyticus and high levels of viable bacteria at the point of consumption were generated for each simulated scenario. This tool can provide valuable information about V. parahaemolyticus exposure and potential control measures and can help oyster companies and regulatory agencies evaluate the impact of product quality and safety during cold chain management. If coupled with suitable monitoring systems, such models could enable preemptive action to be taken to counteract unfavorable supply chain conditions.

The simple neuroendocrine-immune regulatory network in oyster Crassostrea gigas mediates complex functions.

PubMed

Liu, Zhaoqun; Wang, Lingling; Zhou, Zhi; Sun, Ying; Wang, Mengqiang; Wang, Hao; Hou, Zhanhui; Gao, Dahai; Gao, Qiang; Song, Linsheng

2016-05-19

The neuroendocrine-immune (NEI) regulatory network is a complex system, which plays an indispensable role in the immunity of the host. In the present study, the bioinformatical analysis of the transcriptomic data from oyster Crassostrea gigas and further biological validation revealed that oyster TNF (CgTNF-1 CGI_10018786) could activate the transcription factors NF-κB and HSF (heat shock transcription factor) through MAPK signaling pathway, and then regulate apoptosis, redox reaction, neuro-regulation and protein folding in oyster haemocytes. The activated immune cells then released neurotransmitters including acetylcholine, norepinephrine and [Met(5)]-enkephalin to regulate the immune response by arising the expression of three TNF (CGI_10005109, CGI_10005110 and CGI_10006440) and translocating two NF-κB (Cgp65, CGI_10018142 and CgRel, CGI_10021567) between the cytoplasm and nuclei of haemocytes. Neurotransmitters exhibited the immunomodulation effects by influencing apoptosis and phagocytosis of oyster haemocytes. Acetylcholine and norepinephrine could down-regulate the immune response, while [Met(5)]-enkephalin up-regulate the immune response. These results suggested that the simple neuroendocrine-immune regulatory network in oyster might be activated by oyster TNF and then regulate the immune response by virtue of neurotransmitters, cytokines and transcription factors.

Detection and distribution of ostreid herpesvirus 1 in experimentally infected Pacific oyster spat.

PubMed

Segarra, Amélie; Baillon, Laury; Faury, Nicole; Tourbiez, Delphine; Renault, Tristan

2016-01-01

High mortality rates are reported in spat and larvae of Pacific oyster Crassostrea gigas and associated with ostreid herpesvirus 1 (OsHV-1) detection in France. Although the viral infection has been experimentally reproduced in oyster larvae and spat, little knowledge is currently available concerning the viral entry and its distribution in organs and tissues. This study compares OsHV-1 DNA and RNA detection and localization in experimentally infected oysters using two virus doses: a low dose that did not induce any mortality and a high dose inducing high mortality. Real time PCR demonstrated significant differences in terms of viral DNA amounts between the two virus doses. RNA transcripts were detected in oysters receiving the highest dose of viral suspension whereas no transcript was observed in oysters injected with the low dose. This study also allowed observing kinetics of viral DNA and RNA detection in different tissues of oyster spat. Finally, viral detection was significantly different in function of tissues (p<0.005), time (p<0.005) with an interaction between tissues and time (p<0.005) for each probe. Copyright © 2015 Elsevier Inc. All rights reserved.

A Rhodopsin-Like Gene May Be Associated With the Light-Sensitivity of Adult Pacific Oyster Crassostrea gigas

PubMed Central

Wu, Changlu; Jiang, Qiuyun; Wei, Lei; Cai, Zhongqiang; Chen, Jun; Yu, Wenchao; He, Cheng; Wang, Jiao; Guo, Wen; Wang, Xiaotong

2018-01-01

Light-sensitivity is important for mollusc survival, as it plays a vital role in reproduction and predator avoidance. Light-sensitivity has been demonstrated in the adult Pacific oyster Crassostrea gigas, but the genes associated with light-sensitivity remain unclear. In the present study, we designed experiments to identify the genes associated with light-sensitivity in adult oysters. First, we assessed the Pacific oyster genome and identified 368 genes annotated with the terms associated with light-sensitivity. Second, the function of the four rhodopsin-like superfamily member genes was tested by using RNAi. The results showed that the highest level of mRNA expression of the vision-related genes was in the mantle; however, this finding is not true for all oyster genes. Interestingly, we also found four rhodopsin-like superfamily member genes expressed at an very high level in the mantle tissue. In the RNAi experiment, when one of rhodopsin-like superfamily member genes (CGI_1001253) was inhibited, the light-sensitivity capacity of the injected oysters was significantly reduced, suggesting that CGI_10012534 may be associated with light-sensitivity in the adult Pacific oyster. PMID:29615921

The simple neuroendocrine-immune regulatory network in oyster Crassostrea gigas mediates complex functions

NASA Astrophysics Data System (ADS)

Liu, Zhaoqun; Wang, Lingling; Zhou, Zhi; Sun, Ying; Wang, Mengqiang; Wang, Hao; Hou, Zhanhui; Gao, Dahai; Gao, Qiang; Song, Linsheng

2016-05-01

The neuroendocrine-immune (NEI) regulatory network is a complex system, which plays an indispensable role in the immunity of the host. In the present study, the bioinformatical analysis of the transcriptomic data from oyster Crassostrea gigas and further biological validation revealed that oyster TNF (CgTNF-1 CGI_10018786) could activate the transcription factors NF-κB and HSF (heat shock transcription factor) through MAPK signaling pathway, and then regulate apoptosis, redox reaction, neuro-regulation and protein folding in oyster haemocytes. The activated immune cells then released neurotransmitters including acetylcholine, norepinephrine and [Met5]-enkephalin to regulate the immune response by arising the expression of three TNF (CGI_10005109, CGI_10005110 and CGI_10006440) and translocating two NF-κB (Cgp65, CGI_10018142 and CgRel, CGI_10021567) between the cytoplasm and nuclei of haemocytes. Neurotransmitters exhibited the immunomodulation effects by influencing apoptosis and phagocytosis of oyster haemocytes. Acetylcholine and norepinephrine could down-regulate the immune response, while [Met5]-enkephalin up-regulate the immune response. These results suggested that the simple neuroendocrine-immune regulatory network in oyster might be activated by oyster TNF and then regulate the immune response by virtue of neurotransmitters, cytokines and transcription factors.

Keeping Pace with Climate Change: Habitat Protection in the Face of Uncertainty

NASA Astrophysics Data System (ADS)

Flitcroft, R. L.; Burnett, K.; Giannico, G.

2014-12-01

Estuaries provide critical habitat for many economically and culturally important species. In the Pacific Northwest, intertidal and subtidal areas provide critical habitat for production of native and commercial oysters (Olympia oyster Ostrea lurida and Pacific oyster Crassostrea gigas, respectively) that in turn provide refuge and rearing habitat for Dungeness Crab, Metacarcinus magister. Environments ranging from subtidal through freshwater zones provide nursery areas for juvenile salmonids at different development stages in their life history. Most Oregon estuaries have been significantly altered by humans over the past century, reducing the quantity and diversity of available habitats. Management agencies have responded with projects to restore and enhance estuarine habitats. Unfortunately, future climate change and sea-level rise could render many current restoration projects ineffective over time. Planning for habitat restoration that keeps pace with climate change will be critical to the sustainable production of seafood and maintenance of ecosystem function. However, land managers and citizens lack the spatially-explicit data needed to incorporate the potential effects of climate change and sea-level rise into planning for habitat improvement projects in estuarine areas. To meet this need, we developed simple models using LiDAR to characterize the geomorphologies of multiple Oregon estuaries. We were able to map the margin of current mean high tide, and contour intervals associated with different potential increases in mean high tide. Because our analysis relied on digital data, we compared three types of digital data in one estuary to assess the utility of different data sets in predicting changes in estuary shape. For each estuary, we assessed changes in the amount and complexity of edge habitats. The simple modeling approach we applied can also be used to identify areas that may be most amenable to pre-emptive restoration actions to mitigate or enhance habitats under future climatic conditions.

Lahar hazard zones for eruption-generated lahars in the Lassen Volcanic Center, California

USGS Publications Warehouse

Robinson, Joel E.; Clynne, Michael A.

2012-01-01

Lahar deposits are found in drainages that head on or near Lassen Peak in northern California, demonstrating that these valleys are susceptible to future lahars. In general, lahars are uncommon in the Lassen region. Lassen Peak's lack of large perennial snowfields and glaciers limits its potential for lahar development, with the winter snowpack being the largest source of water for lahar generation. The most extensive lahar deposits are related to the May 1915 eruption of Lassen Peak, and evidence for pre-1915 lahars is sparse and spatially limited. The May 1915 eruption of Lassen Peak was a small-volume eruption that generated a snow and hot-rock avalanche, a pyroclastic flow, and two large and four smaller lahars. The two large lahars were generated on May 19 and 22 and inundated sections of Lost and Hat Creeks. We use 80 years of snow depth measurements from Lassen Peak to calculate average and maximum liquid water depths, 2.02 meters (m) and 3.90 m respectively, for the month of May as estimates of the 1915 lahars. These depths are multiplied by the areal extents of the eruptive deposits to calculate a water volume range, 7.05-13.6x106 cubic meters (m3). We assume the lahars were a 50/50 mix of water and sediment and double the water volumes to provide an estimate of the 1915 lahars, 13.2-19.8x106 m3. We use a representative volume of 15x106 m3 in the software program LAHARZ to calculate cross-sectional and planimetric areas for the 1915 lahars. The resultant lahar inundation zone reasonably portrays both of the May 1915 lahars. We use this same technique to calculate the potential for future lahars in basins that head on or near Lassen Peak. LAHARZ assumes that the total lahar volume does not change after leaving the potential energy, H/L, cone (the height of the edifice, H, down to the approximate break in slope at its base, L); therefore, all water available to initiate a lahar is contained inside this cone. Because snow is the primary source of water for lahar generation, we assume that the maximum historical water equivalent, 3.90 m, covers the entire basin area inside the H/L cone. The product of planimetric area of each basin inside the H/L and the maximum historical water equivalent yields the maximum water volume available to generate a lahar. We then double the water volumes to approximate maximum lahar volumes. The maximum lahar volumes and an understanding of the statistical uncertainties inherent to the LAHARZ calculations guided our selection of six hypothetical volumes, 1, 3, 10, 30, 60, and 90x106 m3, to delineate concentric lahar inundation zones. The lahar inundation zones extend, in general, tens of kilometers away from Lassen Peak. The small, more-frequent lahar inundation zones (1 and 3x106 m3) are, on average, 10 km long. The exceptions are the zones in Warner Creek and Mill Creek, which extend much further. All but one of the small, more-frequent lahar inundation zones reach outside of the Lassen Volcanic National Park boundary, and the zone in Mill Creek extends well past the park boundary. All of the medium, moderately frequent lahar inundation zones (10 and 30x106 m3) extend past the park boundary and could potentially impact the communities of Viola and Old Station and State Highways 36 and 44, both north and west of Lassen Peak. The approximately 27-km-long on average, large, less-frequent lahar inundation zones (60 and 90x106 m3) represent worst-case lahar scenarios that are unlikely to occur. Flood hazards continue downstream from the toes of the lahars, potentially affecting communities in the Sacramento River Valley.

21 CFR 161.130 - Oysters.

Code of Federal Regulations, 2010 CFR

2010-04-01

... water. Before packing into the containers for shipment or other delivery for consumption the oysters are... FOOD AND DRUG ADMINISTRATION, DEPARTMENT OF HEALTH AND HUMAN SERVICES (CONTINUED) FOOD FOR HUMAN CONSUMPTION FISH AND SHELLFISH Requirements for Specific Standardized Fish and Shellfish § 161.130 Oysters. (a...

76 FR 37267 - Safety Zone, Pantego Creek; Belhaven, NC

Federal Register 2010, 2011, 2012, 2013, 2014

2011-06-27

... obstructions to the waterway that may cause death, serious bodily harm, or property damage. Establishing a... notice and opportunity to comment when the agency for good cause finds that those procedures are... finds that good cause exists for not publishing a notice of proposed rulemaking (NPRM) with respect to...

NITRATE REMOVAL EFFECTIVENESS OF A RIPARIAN BUFFER ALONG A SMALL AGRICULTURAL STREAM IN WESTERN OREGON

EPA Science Inventory

We established two study sites with similar soils and hydrology but contrasting riparian vegetation along Lake Creek, an intermittent stream that drains perennial ryegrass fields in the Willamette Valley of western Oregon. One site had a non-cultivated riparian zone with a plant...

Reducing oyster-associated bacteria levels using supercritical fluid CO2 as an agent of warm pasteurization.

PubMed

Meujo, Damaris A F; Kevin, Dion A; Peng, Jiangnan; Bowling, John J; Liu, Jianping; Hamann, Mark T

2010-03-31

An innovative approach to Post-Harvest Processing (PHP) of oysters is introduced focusing on the effects of supercritical carbon dioxide (scCO(2)) on bacterial contaminants trapped in the digestive system of oysters. Oysters were exposed to scCO(2) under two conditions: (1) 100 bar and 37 degrees C for 30 min and (2) 172 bar and 60 degrees C for 60 min. Using FDA standard guidelines for food analysis, variations in the Aerobic Plate Count (APC) were assessed. It was established that exposing oysters to CO(2) at 100 bar and 37 degrees C for 30 min and at 172 bar and 60 degrees C for 60 min induced 2-log and 3-log reductions in the APC respectively. The decrease in the microbial load as a result of treatment with scCO(2) was found to be significant (P=0.002). A release of adductor muscles from the shell was noted in oysters treated at 172 bar and 60 degrees C for 60 min; this was not the case for oysters treated at 100 bar and 37 degrees C for 30 min. A blind study allowing sensory analysis of treated vs. untreated oysters was also completed and no significant change in the physical appearance, smell, or texture was recorded. In this paper, we also report the effect of scCO(2) on several bacterial isolates, including a referenced ATCC strain of a non-pathogenic Vibrio (Vibrio fischeri) as well as several other bacterial isolates cultured from oyster' tissues and found to share biochemical features common to pathogenic Vibrio strains. A complete inactivation (minimum 7-log reduction) was achieved with these latter bacterial isolates. A 6-log reduction was observed with V. fischeri. Copyright 2009 Elsevier B.V. All rights reserved.

High pressure-induced inactivation of Qbeta coliphage and c2 phage in oysters and in culture media.

PubMed

Smiddy, Mary; Kelly, Alan L; Patterson, Margaret F; Hill, Colin

2006-02-01

High pressure (HP) treatment inactivates bacteria in shellfish, but its effects on viruses in shellfish have not yet been determined, although viral illness is frequently associated with shellfish consumption. The aim of this study was to investigate the baroresistance of two bacteriophage viruses, Qbeta coliphage and c2 phage, in oysters and in culture media. High numbers (>or=10(7) ml(-1) or g(-1)) of both phages were obtained in culture media and in oysters. Samples were HP treated at 200-800 MPa at 20 degrees C for up to 30 min. Little or no inactivation of either phage was observed in oysters or in culture media after treatment at

Effects of High-Hydrostatic Pressure on Inactivation of Human Norovirus and Physical and Sensory Characteristics of Oysters.

PubMed

Ye, Mu; Lingham, Talaysha; Huang, Yaoxin; Ozbay, Gulnihal; Ji, Lin; Karwe, Mukund; Chen, Haiqiang

2015-06-01

The purpose of the study was to determine the effect of high-hydrostatic pressure (HHP) on inactivation of human norovirus (HuNoV) in oysters and to evaluate organoleptic characteristics of oysters treated at pressure levels required for HuNoV inactivation. Genogroup I.1 (GI.1) or Genogroup II.4 (GII.4) HuNoV was inoculated into oysters and treated at 300 to 600 MPa at 25 and 0 °C for 2 min. After HHP, viral particles were extracted by porcine gastric mucin-conjugated magnetic beads (PGM-MBs) and viral RNA was quantified by real-time RT-PCR. Lower initial temperature (0 °C) significantly enhanced HHP inactivation of HuNoV compared to ambient temperature (25 °C; P < 0.05). HHP at 350 and 500 MPa at 0 °C could achieve more than 4 log10 reduction of GII.4 and GI.1 HuNoV in oysters, respectively. HHP treatments did not significantly change color or texture of oyster tissue. A 1- to 5-scale hedonic sensory evaluation on appearance, aroma, color, and overall acceptability showed that pressure-treated oysters received significantly higher quality scores than the untreated control (P < 0.05). Elevated pressure levels at 450 and 500 MPa did not significantly affect scores compared to 300 MPa at 0 °C, indicating increasing pressure level did not affect sensory acceptability of oysters. Oysters treated at 0 °C had slightly lower acceptability than the group treated at room temperature on day 1 (P < 0.05), but after 1 wk storage, no significant difference in sensory attributes and consumer desirability was observed (P > 0.05). © 2015 Institute of Food Technologists®

Optimal Site Characterization and Selection Criteria for Oyster Restoration using Multicolinear Factorial Water Quality Approach

NASA Astrophysics Data System (ADS)

Yoon, J.

2015-12-01

Elevated levels of nutrient loadings have enriched the Chesapeake Bay estuaries and coastal waters via point and nonpoint sources and the atmosphere. Restoring oyster beds is considered a Best Management Practice (BMP) to improve the water quality as well as provide physical aquatic habitat and a healthier estuarine system. Efforts include declaring sanctuaries for brood-stocks, supplementing hard substrate on the bottom and aiding natural populations with the addition of hatchery-reared and disease-resistant stocks. An economic assessment suggests that restoring the ecological functions will improve water quality, stabilize shorelines, and establish a habitat for breeding grounds that outweighs the value of harvestable oyster production. Parametric factorial models were developed to investigate multicolinearities among in situ water quality and oyster restoration activities to evaluate posterior success rates upon multiple substrates, and physical, chemical, hydrological and biological site characteristics to systematically identify significant factors. Findings were then further utilized to identify the optimal sites for successful oyster restoration augmentable with Total Maximum Daily Loads (TMDLs) and BMPs. Factorial models evaluate the relationship among the dependent variable, oyster biomass, and treatments of temperature, salinity, total suspended solids, E. coli/Enterococci counts, depth, dissolved oxygen, chlorophyll a, nitrogen and phosphorus, and blocks consist of alternative substrates (oyster shells versus riprap, granite, cement, cinder blocks, limestone marl or combinations). Factorial model results were then compared to identify which combination of variables produces the highest posterior biomass of oysters. Developed Factorial model can facilitate maximizing the likelihood of successful oyster reef restoration in an effort to establish a healthier ecosystem and to improve overall estuarine water quality in the Chesapeake Bay estuaries.

Temporal variation in development of ecosystem services from oyster reef restoration

USGS Publications Warehouse

LaPeyre, Megan K.; Humphries, Austin T.; Casas, Sandra M.; La Peyre, Jerome F.

2014-01-01

Restoration ecology relies heavily on ecosystem development theories that generally assume development of fully functioning natural systems over time, but often fail to identify the time-frame required for provision of desired functions, or acknowledge different pathways of functional development. In estuaries, a decline of overall habitat quality and functioning has led to significant efforts to restore critical ecosystem services, recently through the creation and restoration of oyster reefs. Oyster reef restoration generally occurs with goals of (1) increasing water quality via filtration through sustainable oyster recruitment, (2) stabilizing shorelines, and (3) creating and enhancing critical estuarine habitat for fish and invertebrates. We restored over 260 m2 of oyster reef habitat in coastal Louisiana and followed the development and provision of these ecosystem services from 2009 through 2012. Oysters recruited to reefs immediately, with densities of oysters greater than 75 mm exceeding 80 ind m−2 after 3 years, and provision of filtration rates of 1002 ± 187 L h−1 m−2; shoreline stabilization effects of the created reefs were minimal over the three years of monitoring, with some evidence of positive shoreline stabilization during higher wind/energy events only; increased nekton abundance of resident, but not larger transient fish was immediately measurable at the reefs, however, this failed to increase through time. Our results provide critical insights into the development trajectories of ecosystem services provided by restored oyster reefs, as well as the mechanisms mediating these changes. This is critical both ecologically to understand how and where a reef thrives, and for policy and management to guide decision-making related to oyster reef restoration and the crediting and accounting of ecosystem services.

In-place oil shale resources in the saline-mineral and saline-leached intervals, Parachute Creek Member of the Green River Formation, Piceance Basin, Colorado

USGS Publications Warehouse

Birdwell, Justin E.; Mercier, Tracey J.; Johnson, Ronald C.; Brownfield, Michael E.; Dietrich, John D.

2014-01-01

A recent U.S. Geological Survey analysis of the Green River Formation of the Piceance Basin in western Colorado shows that about 920 and 352 billion barrels of oil are potentially recoverable from oil shale resources using oil-yield cutoffs of 15 and 25 gallons per ton (GPT), respectively. This represents most of the high-grade oil shale in the United States. Much of this rich oil shale is found in the dolomitic Parachute Creek Member of the Green River Formation and is associated with the saline minerals nahcolite and halite, or in the interval where these minerals have been leached by groundwater. The remaining high-grade resource is located primarily in the underlying illitic Garden Gulch Member of the Green River Formation. Of the 352 billion barrels of potentially recoverable oil resources in high-grade (≥25 GPT) oil shale, the relative proportions present in the illitic interval, non-saline R-2 zone, saline-mineral interval, leached interval (excluding leached Mahogany zone), and Mahogany zone were 3.1, 4.5, 36.6, 23.9, and 29.9 percent of the total, respectively. Only 2 percent of high-grade oil shale is present in marginal areas where saline minerals were never deposited.

Resazurin as a Proxy for Estimating Stream Respiration

NASA Astrophysics Data System (ADS)

Gonzalez Pinzon, R. A.; Haggerty, R.; Argerich, A.; Briggs, M.; Lautz, L. K.; Lemke, D.; Hare, D. K.

2010-12-01

Hydrologic retention in stream ecosystems favors the reactions of solutes and nutrients in metabolically active transient storage (MATS) zones. These zones are hot spots where metabolic activity is expected to contribute significantly to ecosystem respiration. We compare the results of a series of coinjections of resazurin (Raz) as a redox sensitive tracer, and NaCl as a conservative tracer to investigate the function of MATS zones. Raz is a dye that undergoes an irreversible reduction to resorufin (Rru) when exposed to aerobic respiration. To characterize the transformation of Raz we measured the BTC of the tracers at the boundary conditions, and during plateau concentrations we sampled the longitudinal profile of surface water. We also used the two-station diel technique to quantify gross primary production (GPP) and community respiration (CR) within the reaches. Injections have been performed in streams with different morphology, streambed composition, and riparian vegetation in Oregon-USA (WS 1 and WS 3 in the HJ Andrews Forest LTER, and Drift Creek), Spain (Riera de Santa Fe del Montseny, Catalonia) and Wyoming-USA (Cherry Creek). The results support the idea that under different ranges of community respiration, the transformation of Raz to Rru is a proxy for quantifying MATS, characterizing spatial heterogeneity in respiration rates, and ultimately, could be used to estimate ecosystem respiration in environments where direct measurement is challenging.

Particulate Organic Carbon (POC) and Particulate N (PN) behaviors in Response to Storm Events in the Clear Creek, IA Site of the Intensively Managed Landscape - Critical Zone Observatory (IML-CZO)

NASA Astrophysics Data System (ADS)

Blair, N. E.; Ward, A. S.; Bettis, E. A., III; Zhou, N.; Kazmierczak, B. M.

2017-12-01

A goal of the NSF-sponsored IML-CZO (EAR-1331906) is to understand how the Critical Zone of the agricultural Midwest of North America will respond to the pressures of increased land use and climate change. As a step towards that goal, the landscape response to storm events of one of the IML-CZO field sites, the Clear Creek watershed in Iowa, was studied to determine the sources and quantities of suspended load POC and PN to the creek. The Clear Creek watershed is 270 km2 and is dominated by corn-soybean agriculture. Water samples were collected prior to, during and after 6 storm events during the 2014-2016 period at up to three stations on the creek. The suspended particulate load was isolated via filtration and characterized by C, N elemental and stable isotope analyses. Sediment concentration - discharge relationships vary considerably between storm events. POC δ13C values exhibit pronounced yet consistent changes within events as a function of discharge. In general, δ13C values are reflective of C3 plant sources ( -30‰) at base flow and trend towards an asymptotic value of -22‰ with increasing discharge. The most positive δ13C values also correlate with higher C/N ratios. The 13C-enrichment of the suspended load thus seems to be the result of the inclusion of C4 plant debris, principally corn, from surface soils. Bank erosion with mobilization of in-channel production likely dominate the POC sources at base flow. Top soil erosion incorporating corn (and C3 plant) residue dominate stream inputs at Q >3000 l/s. The C4 plant signal is more prevalent at upstream stations, which is consistent with land use patterns. The presence of corn in the system provides an in situ particle tracer for POC and PN that can be followed downstream and used to investigate exchanges of material between the landscape and stream.

Species profiles: Life histories and environmental requirements of coastal fishes and invertebrates (Pacific Northwest): Olympia oyster

DOE Office of Scientific and Technical Information (OSTI.GOV)

Couch, D.; Hassler, T.J.

Species profiles are literature summaries of the taxonomy, morphology, range, life history, and environmental requirements of coastal aquatic species. They are designed to assist in environmental impact assessments. Olympia oysters initially spawn as males then alternate their functional genders. Spawning begins at 13-16 {degree}C and occurs from spring to fall. After a short planktonic stage, larvae attach to the substrate. Olympia oysters thrive at salinities of 25 ppt or above; they are killed by freezing temperatures. Olympia oysters once supported large sustenance and commercial fisheries. Olympia oysters have not returned to pre-exploitation population levels which declined because of pollution andmore » loss of habitat. 32 refs., 2 figs.« less

Evidence for the importance of ductile shear in regional fabric development in Grenville-age gneisses of the Beaver Creek region, Northwest Lowlands, New York State

DOE Office of Scientific and Technical Information (OSTI.GOV)

Tewksbury, B.; Culbertson, H.; Marcoline, J.

1993-03-01

In the Beaver Creek region of the Northwest Lowlands, Brown (1989) has described Grenville-age metasedimentary and metaigneous rocks as showing a prominent regional foliation, early southeastward emplacement of a nappe complex (the North Gouverneur Nappe), 2 subsequent generations of folds, and late regional faulting along the Beaver Creek, Pleasant Lake, and Hickory-Mud Lakes faults. The authors examined a variety of units across the Beaver Creek region, including a granitic augen gneiss immediately west of the Beaver Creek Fault Zone, an alaskitic gneiss immediately below Brown's (1989) North Gouverneur Nappe Sole Fault, a biotitic granitic gneiss within the body of Brown'smore » North Gouverneur Nappe, and hornblende augen gneisses and metasediments adjacent to the granitic gneisses. Each of the granitic units has moderately well-developed to extremely well-developed quartz ribbon lineations, and all show at least 2 ductile shear fabrics. Shear fabrics are present as well in the hornblende augen gneisses but are essentially absent in most of the metasedimentary lithologies, even those immediately adjacent to well-lineated, sheared granitic gneiss. The earliest shear fabrics exhibit spectacular quartz ribbon lineations, sigma grains, and, in the hornblende augen gneiss, shear bands. Granitic gneisses in the Beaver Creek Region show shear fabrics in addition to the main fabric in the rock. A second, variably-recovered shear fabric with quartz ribbons and well-developed sigma grains with core and mantle structure overprints the main shear fabric and shows largely the same sense of shear. The authors suggest further that a regional kinematic model for the Beaver Creek region must take into account significant, protracted regional shear, perhaps including formation of sheath folds, as in the Hyde School Gneiss at Payne Lake and Dobbs Creek.« less

Hybridization and cytonuclear associations among native westslope cutthroat trout, introduced rainbow trout, and their hybrids within the Stehekin River drainage, North Cascades National Park

USGS Publications Warehouse

Ostberg, C.O.; Rodriguez, R.J.

2006-01-01

Historic introductions of nonnative rainbow trout Oncorhynchus mykiss into the native habitats of cutthroat trout O. clarkii have impacted cutthroat trout populations through introgressive hybridization, creating challenges and concerns for cutthroat trout conservation. We examined the effects of rainbow trout introductions on the native westslope cutthroat trout O. c. lewisii within the Stehekin River drainage, North Cascades National Park, Washington, by analyzing 1,763 salmonid DNA samples from 18 locations with nine diagnostic nuclear DNA markers and one diagnostic mitochondrial DNA (mtDNA) marker. Pure westslope cutthroat trout populations only occurred above upstream migration barriers in the Stehekin River and Park Creek. Two categories of rainbow trout admixture were observed: (1) less than 10% within the Stehekin River drainage above the Bridge Creek confluence and the middle and upper Bridge Creek drainage and (2) greater than 30% within the Stehekin River below the Bridge Creek confluence and in lower Bridge Creek. Hybrid indices and multilocus genotypes revealed an absence of rainbow trout and reduced hybrid diversity within the Stehekin River above the Bridge Creek confluence relative to hybrid diversity in the Stehekin River below the confluence and within lower Bridge Creek. Cytonuclear disequilibrium statistics revealed assortative mating between westslope cutthroat and rainbow trout but not among hybrids within the same locations. This suggests that a randomly mating hybrid swarm does not currently exist. However, continual migration of parental genotypes into the study location could also create significant cytonuclear disequilibria. The Stehekin River represents a novel and unique example of a dynamic hybridization zone where the invasion of rainbow trout alleles into the Stehekin River westslope cutthroat trout population above the Bridge Creek confluence appears to be impeded, suggesting that divergent ecological or evolutionary mechanisms promote the population structure within the Stehekin River drainage, depending upon location.

Variability of CO2 emissions during the rearing cycle of a semi-intensive shrimp farm in a mangrove coastal zone (New Caledonia).

PubMed

Aimé, Joanne; Allenbach, Michel; Bourgeois, Carine; Léopold, Audrey; Jacotot, Adrien; Vinh, Truong Van; Nho, Nguyen Thanh; Patrona, Luc Della; Marchand, Cyril

2018-04-01

In New Caledonia, shrimp ponds are built not on cleared mangroves but on salt flats behind the mangroves. The objectives of this study were to determine the variability of CO 2 fluxes from a semi-intensive shrimp pond during active and non-active periods of the farm and to determine the carbon dynamics from the upstream tidal creek to the downstream creek, which receives the farm's effluents. CO 2 emissions from the active pond were estimated at 11.1 ± 5.26 mmol CO 2  m -2  d -1 . By modifying the hydrodynamics of the creeks, farm practices also influenced CO 2 emissions from both the upstream and downstream creeks. After tillage, all the organic carbon deposited at the pond bottom during the active period was mineralized, resulting in CO 2 emissions to the atmosphere estimated at 7.9 TCO 2  ha -1 . Therefore, shrimp farming is an anthropogenic source of CO 2 to the atmosphere, but suitable and optimized rearing practices limit these emissions. Copyright © 2018 Elsevier Ltd. All rights reserved.

DIFFERENTIAL EFFECTS OF OYSTER (CRASSOSTREA VIRGINICA) DEFENSES ON CLINICAL AND ENVIRONMENTAL ISOLATES OF VIBRIO PARAHEMOLYTICUS

EPA Science Inventory

Three clinical (2030, 2062, and 2107) and three environmental (1094, 1163, and ATCC 17802) isolates of Vibrio parahaemolyticus were exposed to hemocytes and plasma collected from oysters (Crassostrea virginica) to determine their susceptibility to putative oyster defenses. Clinic...

PERKINSUS-"CIDAL" ACTIVITY OF OYSTER HEMOCYTES USING A TETRAZOLIUM DYE REDUCTION ASSAY: OPTIMIZATION AND APPLICATIONS

EPA Science Inventory

A bactericidal assay developed to assess the ability of oyster (Crassostrea virginica) hemocytes to kill the human pathogen Vibrio parahaemolyticus was optimized to estimate killing of the oyster parasite Perkinsus marinus. Assay variables, temperature, hemocyte:parasite ratio, i...

ANTIMICROBIAL ACTIVITY OF COPPER AND ZINC ACCUMULATED BY EASTERN OYSTER AMEBOCYTES

EPA Science Inventory

Fisher, William S. Submitted. Antimicrobial Activity of Copper and Zinc Accumulated by Eastern Oyster Amebocytes. J. Shellfish Res. 54 p. (ERL,GB 1196).

The distribution of eastern oysters Crassostrea virginica near terrestrial watersheds has led to a general impression t...

Directly measured denitrification reveals oyster aquaculture and restored oyster reefs remove nitrogen at comparable high rates

EPA Science Inventory

Coastal systems are increasingly impacted by over-enrichment of nutrients, which has cascading effects for ecosystem functioning. Oyster restoration and aquaculture are both hypothesized to mitigate excessive nitrogen (N) loads via benthic denitrification (DNF). However, this has...

Antiviral Defense and Innate Immune Memory in the Oyster.

PubMed

Green, Timothy J; Speck, Peter

2018-03-16

The Pacific oyster, Crassostrea gigas , is becoming a valuable model for investigating antiviral defense in the Lophotrochozoa superphylum. In the past five years, improvements to laboratory-based experimental infection protocols using Ostreid herpesvirus I (OsHV-1) from naturally infected C. gigas combined with next-generation sequencing techniques has revealed that oysters have a complex antiviral response involving the activation of all major innate immune pathways. Experimental evidence indicates C. gigas utilizes an interferon-like response to limit OsHV-1 replication and spread. Oysters injected with a viral mimic (polyI:C) develop resistance to OsHV-1. Improved survival following polyI:C injection was found later in life (within-generational immune priming) and in the next generation (multi-generational immune priming). These studies indicate that the oyster's antiviral defense system exhibits a form of innate immune-memory. An important priority is to identify the molecular mechanisms responsible for this phenomenon. This knowledge will motivate the development of practical and cost-effective treatments for improving oyster health in aquaculture.

Thiabendazole uptake in shimeji, king oyster, and oyster mushrooms and its persistence in sterile and nonsterile substrates.

PubMed

Zhang, Zhiyong; Jiang, Wayne; Jian, Qiu; Song, Wencheng; Zheng, Zuntao; Ke, Changjie; Liu, Xianjin

2014-02-12

Thiabendazole in the substrates incurred from spraying and premixing was translocated to the pileus, stipe, and volva of selected mushrooms. The spraying on the substrates resulted in higher residues of thiabendazole in all three mushrooms than the premixing treatment. For premixing, in the five substrates, half-lives of thiabendazole were found to be 13.6 days for shimeji, 10.0 days for king oyster, 13.7 days for oyster, 19.1 days for sterilized substrate, and 8.4 days for nonsterilized substrate, respectively. For spraying, the longest and shortest half-lives were found to be 19.5 and 8.1 days for the nonsterilized and sterilized substrates, respectively. The residues of thiabendazole in three edible fungi were increased with the incubation days from 3 to 5 to 7. The residues of thiabendazole in king oyster were the highest among the three fungi while those in shimeji and oyster showed similar patterns.

Occurrence of Vibrio parahaemolyticus and Vibrio vulnificus in retail raw oysters from the eastern coast of Thailand.

PubMed

Changchai, Nuttawee; Saunjit, Sudarat

2014-05-01

Occurrence, population density and virulence of Vibrio parahaemolyticus and V. vulnificus in 240 retail raw oysters collected monthly between March 2010 and February 2011 from Ang Sila coast, Chon Buri Province, Thailand were determined using most probable number (MPN) multiplex PCR. Multiplex PCR detected V. parahaemolyticus in 219 raw oyster samples, of which 29 samples contained the virulence tdh. MPN values for V. parahaemolyticus and pathogenic strains in most samples ranged from 10 to 10(2) and from 3 to 10 MPN/g, respectively. The presence of V. vulnificus was found in 53 oyster samples in amounts between 10 and 10(2) MPN/g. Of 1,087 V. parahaemolyticus isolates, 14 and 2 isolates carried tdh and virulence trh, respectively but none with both genes. However, none of the presumptive isolates was shown to be V. vulnificus. The detection of pathogenic V. parahaemolyticus and V. vulnificus in raw oysters has rendered high awareness of risk in consumption of raw or undercooked oysters.

Testing the effect of habitat structure and complexity on nekton assemblages using experimental oyster reefs

USGS Publications Warehouse

Humphries, Austin T.; LaPeyre, Megan K.; Kimball, Matthew E.; Rozas, Lawrence P.

2011-01-01

Structurally complex habitats are often associated with more diverse and abundant species assemblages in both aquatic and terrestrial ecosystems. Biogenic reefs formed by the eastern oyster (Crassostrea virginica) are complex in nature and are recognized for their potential habitat value in estuarine systems along the US Atlantic and Gulf of Mexico coasts. Few studies, however, have examined the response of nekton to structural complexity within oyster reefs. We used a quantitative sampling technique to examine how the presence and complexity of experimental oyster reefs influence the abundance, biomass, and distribution of nekton by sampling reefs 4 months and 16 months post-construction. Experimental oyster reefs were colonized immediately by resident fishes and decapod crustaceans, and reefs supported a distinct nekton assemblage compared to mud-bottom habitat. Neither increased reef complexity, nor age of the experimental reef resulted in further changes in nekton assemblages or increases in nekton abundance or diversity. The presence of oyster reefs per se was the most important factor determining nekton usage.

Oyster reproduction is compromised by acidification experienced seasonally in coastal regions.

PubMed

Boulais, Myrina; Chenevert, Kyle John; Demey, Ashley Taylor; Darrow, Elizabeth S; Robison, Madison Raine; Roberts, John Park; Volety, Aswani

2017-10-16

Atmospheric carbon dioxide concentrations have been rising during the past century, leading to ocean acidification (OA). Coastal and estuarine habitats experience annual pH variability that vastly exceeds the magnitude of long-term projections in open ocean regions. Eastern oyster (Crassostrea virginica) reproduction season coincides with periods of low pH occurrence in estuaries, thus we investigated effects of moderate (pH 7.5, pCO 2 2260 µatm) and severe OA (pH 7.1, pCO 2 5584 µatm; and 6.7, pCO 2 18480 µatm) on oyster gametogenesis, fertilization, and early larval development successes. Exposure at severe OA during gametogenesis caused disruption in oyster reproduction. Oogenesis appeared to be more sensitive compared to spermatogenesis. However, Eastern oyster reproduction was resilient to moderate OA projected for the near-future. In the context of projected climate change exacerbating seasonal acidification, OA of coastal habitats could represent a significant bottleneck for oyster reproduction which may have profound negative implications for coastal ecosystems reliant on this keystone species.

A 1-year investigation of the parasite Haplosporidium nelsoni (MSX) in the Pacific oyster Crassostrea gigas from Dayaowan Bay, China.

PubMed

Wang, Zhongwei; Lu, Xin; Liang, Yubo

2010-06-01

The infection prevalence of the protozoan parasite Haplosporidium nelsoni (MSX) in Pacific oysters (Crassostrea gigas), collected from Dayaowan Bay on the north coast of the Yellow Sea, China, was investigated in 2007. The traditional histological method of diagnosing H. nelsoni infection in oysters was compared to that of polymerase chain reaction (PCR). Histology and the first PCR analysis detected infection in 21 (a total of 240 oysters) (8.75%) oysters, and the second PCR revealed infection in 26 oysters (10.83%). Only local or epithelial infections were found; no systemic infections were detected. Infection by H. nelsoni mostly occurred from April through October, and the monthly prevalence ranged from 5% to 25%, with a peak in August. These results suggest that the prevalence of the parasite is low in Dayaowan Bay. The prevalence of H. nelsoni is thought to be controlled in some way by temperature and salinity.

Tidal controls on riverbed denitrification along a tidal freshwater zone

NASA Astrophysics Data System (ADS)

Knights, Deon; Sawyer, Audrey H.; Barnes, Rebecca T.; Musial, Cole T.; Bray, Samuel

2017-01-01

In coastal rivers, tidal pumping enhances the exchange of oxygen-rich river water across the sediment-water interface, controlling nitrogen cycling in riverbed sediment. We developed a one-dimensional, fluid flow and solute transport model that quantifies the influence of tidal pumping on nitrate removal and applied it to the tidal freshwater zone (TFZ) of White Clay Creek (Delaware, USA). In field observations and models, both oxygenated river water and anoxic groundwater deliver nitrate to carbon-rich riverbed sediment. A zone of nitrate removal forms beneath the aerobic interval, which expands and contracts over daily timescales due to tidal pumping. At high tide when oxygen-rich river water infiltrates into the bed, denitrification rates decrease by 25% relative to low tide. In the absence of tidal pumping, our model predicts that the aerobic zone would be thinner, and denitrification rates would increase by 10%. As tidal amplitude increases toward the coast, nitrate removal rates should decrease due to enhanced oxygen exchange across the sediment-water interface, based on sensitivity analysis. Denitrification hot spots in TFZs are more likely to occur in less permeable sediment under lower tidal ranges and higher rates of ambient groundwater discharge. Our models suggest that tidal pumping is not efficient at removing surface water nitrate but can remove up to 81% of nitrate from discharging groundwater in the TFZ of White Clay Creek. Given the high population densities of coastal watersheds, the reactive riverbeds of TFZs play a critical role in mitigating new nitrogen loads to coasts.

Investigation of the potential for concealed base-metal mineralization at the Drenchwater Creek Zn-Pb-Ag occurrence, northern Alaska, using geology, reconnaissance geochemistry, and airborne electromagnetic geophysics

USGS Publications Warehouse

Graham, Garth E.; Deszcz-Pan, Maria; Abraham, Jared E.; Kelley, Karen D.

2011-01-01

No drilling has taken place at the Drenchwater occurrence, so alternative data sources (for example, geophysics) are especially important in assessing possible indicators of mineralization. Data from the 2005 electromagnetic survey define the geophysical character of the rocks at Drenchwater and, in combination with geological and surface-geochemical data, can aid in assessing the possible shallow (up to about 50 m), subsurface lateral extent of base-metal sulfide accumulations at Drenchwater. A distinct >3-km-long electromagnetic conductive zone (observed in apparent resistivity maps) coincides with, and extends further westward than, mineralized shale outcrops and soils anomalously high in Pb concentrations within the Kuna Formation; this conductive zone may indicate sulfide-rich rock. Models of electrical resistivity with depth, generated from inversion of electromagnetic data, which provide alongflight-line conductivity-depth profiles to between 25 and 50 m below ground surface, show that the shallow subsurface conductive zone occurs in areas of known mineralized outcrops and thins to the east. Broader, more conductive rock along the western ~1 km of the geophysical anomaly does not reach ground surface. These data suggest that the Drenchwater deposit is more extensive than previously thought. The application of inversion modeling also was applied to another smaller geochemical anomaly in the Twistem Creek area. The results are inconclusive, but they suggest that there may be a local conductive zone, possibly due to sulfides.

Gauging state-level and user group views of oyster reef restoration activities in the northern Gulf of Mexico

USGS Publications Warehouse

LaPeyre, Megan K.; Nix, Ashby; Laborde, Luke; Piazza, Bryan P.

2012-01-01

Successful oyster reef restoration, like many conservation challenges, requires not only biological understanding of the resource, but also stakeholder cooperation and political support. To measure perceptions of oyster reef restoration activities and priorities for future restoration along the northern Gulf of Mexico coast, a survey of 1500 individuals representing 4 user groups (oyster harvesters, shrimpers, environmental organization members, professionals), across 5 states (Texas, Louisiana, Mississippi, Alabama, Florida) was conducted in 2011. All respondents highly supported reef restoration efforts, but there was a dichotomy in preferred restoration goals with commercial fishermen more likely to support oyster reef restoration for stock enhancement, while professionals and environmental organization members were more likely to support oyster reef restoration to enhance ecosystem services. All user groups identified enforcement, funding, and appropriate site selection as basic requirements for successful reef restoration. For management of restored oyster reefs, oyster harvesters and shrimpers were less likely to support options that restricted the use of reefs, including gear restrictions and permanent closures, but did support rotating annual reef closures, while other stakeholders were willing to consider all options, including annual reef closures and sanctuary reefs. Overall, there were clear differences in management and communication preferences across user groups, but few differences across states. Understanding these key differences in stakeholder support for, and willingness to accept specific management actions is critical in moving management and restoration forward while minimizing conflict.

Antioxidant and detoxification responses of oysters Crassostrea hongkongensis in a multimetal-contaminated estuary.

PubMed

Liu, Xuan; Wang, Wen-Xiong

2016-11-01

The contaminated oysters discovered in the Pearl River Estuary (Guangdong province, China) contained high levels of metals in their tissues, especially Cu and Zn, indicating that this large and densely urbanized estuary in Southern China suffers from serious metal pollution. The present study aimed to investigate the impacts of multimetal pollution in the Pearl River Estuary on oyster antioxidant and detoxification systems. The responses of various biochemical biomarkers in the ecologically important oyster Crassostrea hongkongensis collected from 7 sites in the Pearl River Estuary were quantified. Significant correlations were demonstrated between the accumulation of Cu and Zn and oxidative stress (lipid peroxidation) and oxidative stress defenses (catalase, glutathione peroxidase) in the oyster gills. Significant correlations between the accumulation of Cd and Cu and detoxification (glutathione and glutathione transferase) in the gills were also documented. Interestingly, metallothionein concentrations were positively correlated with Cd, but negatively correlated with Cu, Ni, and Zn concentrations in the gills. These measurements indicated that Cu in the Pearl River Estuary induced various biochemical responses in the oysters and influenced the susceptibility of oysters to environmental stress. The present study has provided the first evidence of antioxidant and detoxification responses in native contaminated oysters from a field environment seriously contaminated by metals. Coupling biomarkers with tissue metal concentration measurements was a promising approach to identify the metals causing biological impacts in a multimetal-contaminated estuary. Environ Toxicol Chem 2016;35:2798-2805. © 2016 SETAC. © 2016 SETAC.

Some selected heavy metal concentrations in water, sediment, and oysters in the Er-Ren estuary, Taiwan: chemical fractions and the implications for biomonitoring.

PubMed

Chen, Yueh-Min; Li, Hong-Chun; Tsao, Tsung-Ming; Wang, Liaug-Chi; Chang, Yin

2014-11-01

Studies of heavy metal contamination and ecological risk in estuaries are an important emerging area of environmental science. However, there have been few detailed studies of heavy metal contamination that concern the spatial variation of heavy metal levels in water, sediment, and oyster tissue. Because of the effective uptake of heavy metals, cultured oysters are a cheap and effective subject for study. This study, conducts an experiment in the Er-Ren river to examine the biological uptake of heavy metals in farmed, cultured oysters. The distribution of copper, zinc, lead, cadmium, and arsenic concentrations in water, sediment, and oysters from the Er-Ren river is also evaluated. By sequential extraction of the sediments, the following order of mobilities is found for heavy metals Pb > Cd > As > Zn > Cu. The highest percentages of heavy metals are found in the residual phase. The mean uptake rates for young oysters are 7.24 mg kg(-1) day(-1) for Cu and 94.52 mg kg(-1) day(-1) for Zn, but that for adult oyster is 10.79 mg kg(-1) day(-1) for Cu and 137.24 mg kg(-1) day(-1) for Zn. With good policies and management, the establishment of cultured oyster frames in these contaminated tributaries and near shore environments is a potential method for removing Cu and Zn and protecting the coast.

Eating oysters without risk of vibriosis: application of a bacteriophage against Vibrio parahaemolyticus in oysters.

PubMed

Jun, Jin Woo; Kim, Hyoun Joong; Yun, Sae Kil; Chai, Ji Young; Park, Se Chang

2014-10-01

Vibrio parahaemolyticus is a major cause of foodborne illness and related with the consumption of raw contaminated seafood, especially oysters. To evaluate the effectiveness of various applications of a bacteriophage (phage), pVp-1, against a multiple-antibiotic-resistant V. parahaemolyticus pandemic strain (CRS 09-17), we designed artificial contamination models that are most likely to be encountered during oyster processing. When live oysters were treated with bath immersion with pVp-1 after CRS 09-17 challenge, the growth of bacterial strain was significantly reduced. After 72h of phage application with bath immersion, bacterial growth reduction was observed to be 8.9×10(6)CFU/ml (control group) to 1.4×10CFU/ml (treatment group). When pVp-1 was surface-applied on the flesh of oysters after CRS 09-17 inoculation, bacterial growth was properly inhibited. After 12h of phage application on the surface of oysters, bacterial growth inhibition was revealed to be 1.44×10(6)CFU/ml (control group) to 1.94CFU/ml (treatment group). This is the first report, to the best of our knowledge, of oyster surface-application of a phage against a multiple-antibiotic-resistant V. parahaemolyticus pandemic strain, and our successful phage application to various situations emphasizes the potential use of the phage to avoid V. parahaemolyticus infection from aquaculture to consumption. Copyright © 2014 Elsevier B.V. All rights reserved.

Assessment of pollution of the Boca de Camichin Estuary in Nayarit (Mexico) and its influence on oxidative stress in Crassostrea corteziensis oysters.

PubMed

Toledo-Ibarra, G A; Díaz Resendiz, K J G; Ventura-Ramón, G H; Romero-Bañuelos, C A; Medina-Díaz, I M; Rojas-García, A E; Vega-López, A; Girón-Pérez, M I

2016-10-01

Boca de Camichin Estuary is one of the main producers of Crassostrea corteziensis oysters in Mexico, but the presence of pollutants can affect oyster production. Molluscs produce reactive oxygen species (ROS) in response to changes in the environment and pollution. These ROS induce oxidative damage in biomolecules. The main objective of this study was to evaluate pollution in the estuary and the subsequent oxidative stress in C. corteziensis oysters during the 2010 production cycle. For this aim, we performed monthly samplings in the oyster farms from January to May. We took water samples to quantify polycyclic aromatic hydrocarbon (PAH) and metal content; also, we evaluated oxidative damage (lipoperoxidation, lipidic hydroperoxides, protein oxidation) and enzyme activity (CAT, SOD, GPx, GST and AChE) in oyster gills. The results show the presence of Cu, Fe, Mn, naphthalene, benz[a]anthracene, pyrene, benz[a]pyrene and benzo[k]fluoranthene. On the other hand, AChE activity was not inhibited, which suggests that organophosphorus pollutants or carbamates were absent. Regarding oxidative stress, oysters from the estuary had oxidative damage in lipids, not proteins, and altered antioxidant enzyme activity, when compared to control organisms. Interestingly, we did not observe any correlation between the pollutants and the oxidative stress parameters evaluated in this study. Thus, we cannot rule out that a synergistic effect between the environmental variables and the pollutants is causing the oxidative stress in these oysters. Copyright © 2016 Elsevier Inc. All rights reserved.

Influence of oyster culture on biogeochemistry and bacterial community structure at the sediment-water interface.

PubMed

Azandégbé, Afi; Poly, Franck; Andrieux-Loyer, Françoise; Kérouel, Roger; Philippon, Xavier; Nicolas, Jean-Louis

2012-10-01

Bacterial community structure and some biogeochemical parameters were studied in the sediment of two Pacific oyster farming sites, Aber Benoît (AB) and Rivière d'Auray (RA) in Brittany (France), to examine the ecological impact of oysters and to evaluate the emission of sulfide and ammonia from sediment. At AB, the organic matter accumulated in the sediment beneath the oyster tables was rapidly mineralized, with strong fluxes of ammonia and sulfide that reached 1014 and 215 μmol m(-2) h(-1), respectively, in June 2007. At RA, the fluxes were about half as strong on average and better distributed through the year. The ammonia and sulfide concentrations in the overlying water never reached levels that would be toxic to oysters in either site, nor did hypoxia occur. Total culturable bacteria (TCB) varied greatly according to the temperature: from 1.6 × 10(4) to 9.4 × 10(7) cell g(-1) sediment. Inversely, the bacterial community structure remained surprising stable through the seasons, marginally influenced by the presence of oysters and by temperature. Bacterial communities appeared to be characteristic of the sites, with only one common phylotype, Vibrio aestuarianus, a potential oyster pathogen. These data refine the hypothesis of seawater toxicity to oysters because of ammonia and sulfide fluxes and show that the measured environmental factors had only a weak influence on bacterial community structure. © 2012 Federation of European Microbiological Societies. Published by Blackwell Publishing Ltd. All rights reserved.

Temperature-dependent persistence of human norovirus within oysters (Crassotrea virginica)

USDA-ARS?s Scientific Manuscript database

This study characterizes the persistence of human norovirus in Eastern oysters (Crassostrea virginica) held at different seawater temperatures. Oysters were contaminated with human norovirus GI.1 (Norwalk strain 8fIIa) by exposing them to virus contaminated water at 15 degrees C, and subsequently ho...

Elevation of south facade. The twostory structure to the right ...

Library of Congress Historic Buildings Survey, Historic Engineering Record, Historic Landscapes Survey

Elevation of south facade. The two-story structure to the right of the J.C. Lore Oyster House houses the F. & H. Benning Company Oyster Mill, see HAER No. MD-135. - J.C. Lore Oyster House, 14430 Solomons Island Road, Solomons, Calvert County, MD

Markers associated with disease resistance in Eastern oysters, Crassostrea virginica

USDA-ARS?s Scientific Manuscript database

Eastern oyster, Crassostrea viginica, is an economically important aquaculture species in the USA, but production has been impacted by diseases such as dermo and MSX. Efforts have been put into the development of disease-resistant oyster lines using selective breeding techniques. However, these met...

RESPONSES OF OYSTERS AND THEIR HEMOCYTES TO CLINICAL AND ENVIRONMENTAL ISOLATES OF VIBRIO PARAHAEMOLYTICUS

EPA Science Inventory

Interactions of Vibrio parahaemolyticus with oysters and oyster hemocytes were studied using three environmental isolates (1094, 1163 and ATCC 17802) and three clinical isolates (2030, 2062, 2107). Clinical isolates were from patients who became ill during the June 1998 food pois...

Virus, protozoa and organic compounds decay in depurated oysters.

PubMed

Souza, Doris Sobral Marques; Piazza, Rômi Sharon; Pilotto, Mariana Rangel; do Nascimento, Mariana de Almeida; Moresco, Vanessa; Taniguchi, Satie; Leal, Diego Averaldo Guiguet; Schmidt, Éder der Carlos; Cargin-Ferreira, Eduardo; Bícego, Márcia Caruso; Sasaki, Silvio Tarou; Montone, Rosalinda Carmela; de Araujo, Rafael Alves; Franco, Regina Maura Bueno; Bouzon, Zenilda Laurita; Bainy, Afonso Celso Dias; Barardi, Célia Regina Monte

2013-11-01

(1) Evaluate the dynamic of the depuration process of Crassostrea gigas oysters using different ultraviolet doses with different amounts of contaminants (virus, protozoa and organic contaminants) and (2) investigate the morphological changes in the oysters' tissues produced by the depuration procedures. The oysters were allocated in sites with different degrees of contamination and analyzed after 14 days. Some animals were used as positive controls by artificial bioaccumulation with HAdV2 and MNV1 and subjected to depuration assays using UV lamps (18 or 36 W) for 168 h. The following pollutants were researched in the naturally contaminated oysters, oysters after 14 days in sites and oysters during the depuration processes: virus (HAdV, HAV, HuNoV GI/GII and JCPyV), by (RT) qPCR; protozoa (Cryptosporidium and Giardia species), by immunomagnetic separation and immunofluorescence; and organic compounds (AHs, PAHs, LABs, PCBs and organochlorine pesticides-OCs), by chromatography. Changes in the oysters' tissues produced by the depuration processes were also evaluated using histochemical analysis by light microscopy. In the artificially bioaccumulated oysters, only HAdV2 and MNV1 were investigated by (RT) qPCR before the depuration procedures and after 96 and 168 h of these procedures. At 14 days post-allocation, HAdV was found in all the sites (6.2 × 105 to 4.4 × 107 GC g(-1)), and Giardia species in only one site. Levels of PCBs and OCs in the oyster's tissues were below the detection limit for all samples. AHs (3.5 to 4.4 μg g(-1)), PAHs (11 to 191 ng g(-1)) and LABs (57 to 751 ng g(-1)) were detected in the samples from 3 sites. During the depuration assays, we found HAdV, Giardia and Cryptosporidium species until 168 h, independent of UV treatment. AHs, PAHs and LABs were found also after 168 h of depuration (36 W and without UV lamp). The depuration procedures did not produce changes in the oysters' tissues. In the artificially contaminated and depurated oysters, we detected HAdV until 168 h and MNV1 until 96 h of depuration. The applied depuration treatments were unable to eliminate the protozoa or to degrade the HAdV genomes but were able to degrade the MNV1 genomes. Similarly, the UV water treatment was not efficient for aliphatic hydrocarbons, PAHs and LABs, as their concentrations were equivalent or higher to the concentrations of the control samples and samples from depuration tanks without UV treatment. © 2013.

Evidence for large earthquakes on the San Andreas fault at the Wrightwood, California paleoseismic site: A.D. 500 to present

USGS Publications Warehouse

Fumal, T.E.; Weldon, R.J.; Biasi, G.P.; Dawson, T.E.; Seitz, G.G.; Frost, W.T.; Schwartz, D.P.

2002-01-01

We present structural and stratigraphic evidence from a paleoseismic site near Wrightwood, California, for 14 large earthquakes that occurred on the southern San Andreas fault during the past 1500 years. In a network of 38 trenches and creek-bank exposures, we have exposed a composite section of interbedded debris flow deposits and thin peat layers more than 24 m thick; fluvial deposits occur along the northern margin of the site. The site is a 150-m-wide zone of deformation bounded on the surface by a main fault zone along the northwest margin and a secondary fault zone to the southwest. Evidence for most of the 14 earthquakes occurs along structures within both zones. We identify paleoearthquake horizons using infilled fissures, scarps, multiple rupture terminations, and widespread folding and tilting of beds. Ages of stratigraphic units and earthquakes are constrained by historic data and 72 14C ages, mostly from samples of peat and some from plant fibers, wood, pine cones, and charcoal. Comparison of the long, well-resolved paleoseimic record at Wrightwood with records at other sites along the fault indicates that rupture lengths of past earthquakes were at least 100 km long. Paleoseismic records at sites in the Coachella Valley suggest that each of the past five large earthquakes recorded there ruptured the fault at least as far northwest as Wrightwood. Comparisons with event chronologies at Pallett Creek and sites to the northwest suggests that approximately the same part of the fault that ruptured in 1857 may also have failed in the early to mid-sixteenth century and several other times during the past 1200 years. Records at Pallett Creek and Pitman Canyon suggest that, in addition to the 14 earthquakes we document, one and possibly two other large earthquakes ruptured the part of the fault including Wrightwood since about A.D. 500. These observations and elapsed times that are significantly longer than mean recurrence intervals at Wrightwood and sites to the southeast suggest that at least the southermost 200 km of the San Andreas fault is near failure.

Evolution of Late Miocene to Contemporary Displacement Transfer Between the Northern Furnace Creek and Southern Fish Lake Valley Fault Zones and the Central Walker Lane, Western Great Basin, Nevada

NASA Astrophysics Data System (ADS)

Oldow, J. S.; Geissman, J. W.

2013-12-01

Late Miocene to contemporary displacement transfer from the north Furnace Creek (FCF) and southern Fish Lake Valley (FLVF) faults to structures in the central Walker Lane was and continues to be accommodated by a belt of WNW-striking left-oblique fault zones in the northern part of the southern Walker Lane. The WNW fault zones are 2-9 km wide belts of anastomosing fault strands that intersect the NNW-striking FCF and southern FLVF in northern Death Valley and southern Fish Lake Valley, respectively. The WNW fault zones extend east for over 60 km where they merge with a 5-10 km wide belt of N10W striking faults that marks the eastern boundary of the southern Walker Lane. Left-oblique displacement on WNW faults progressively decreases to the east, as motion is successively transferred northeast on NNE-striking faults. NNE faults localize and internally deform extensional basins that each record cumulative net vertical displacements of between 3.0 and 5.2 km. The transcurrent faults and associated basins decrease in age from south to north. In the south, the WNW Sylvania Mountain fault system initiated left-oblique motion after 7 Ma but does not have evidence of contemporary displacement. Farther north, the left-oblique motion on the Palmetto Mountain fault system initiated after 6.0 to 4.0 Ma and has well-developed scarps in Quaternary deposits. Cumulative left-lateral displacement for the Sylvania Mountain fault system is 10-15 km, and is 8-12 km for the Palmetto fault system. The NNE-striking faults that emanate from the left-oblique faults merge with NNW transcurrent faults farther north in the eastern part of the Mina deflection, which links the Owens Valley fault of eastern California to the central Walker Lane. Left-oblique displacement on the Sylvania Mountain and Palmetto Mountain fault zones deformed the Furnace Creek and Fish Lake Valley faults. Left-oblique motion on Sylvania Mountain fault deflected the FCF into the 15 km wide Cucomungo Canyon restraining bend, segmented the >3.0 km deep basin underlying southern Fish Lake Valley, and formed a 2 km wide restraining bend in the FLVF. Part of the left-oblique motion on the Palmetto Mountain fault zone crosses Fish Lake Valley and offsets the FLVF in a 3 km wide restraining bend with the remainder being taken-up by NNW structures along the eastern side of southern Fish Lake Valley.

Timing of large earthquakes since A.D. 800 on the Mission Creek strand of the San Andreas fault zone at Thousand Palms Oasis, near Palm Springs, California

USGS Publications Warehouse

Fumal, T.E.; Rymer, M.J.; Seitz, G.G.

2002-01-01

Paleoseismic investigations across the Mission Creek strand of the San Andreas fault at Thousand Palms Oasis indicate that four and probably five surface-rupturing earthquakes occurred during the past 1200 years. Calendar age estimates for these earthquakes are based on a chronological model that incorporates radio-carbon dates from 18 in situ burn layers and stratigraphic ordering constraints. These five earthquakes occurred in about A.D. 825 (770-890) (mean, 95% range), A.D. 982 (840-1150), A.D. 1231 (1170-1290), A.D. 1502 (1450-1555), and after a date in the range of A.D. 1520-1680. The most recent surface-rupturing earthquake at Thousand Palms is likely the same as the A.D. 1676 ?? 35 event at Indio reported by Sieh and Williams (1990). Each of the past five earthquakes recorded on the San Andreas fault in the Coachella Valley strongly overlaps in time with an event at the Wrightwood paleoseismic site, about 120 km northwest of Thousand Palms Oasis. Correlation of events between these two sites suggests that at least the southernmost 200 km of the San Andreas fault zone may have ruptured in each earthquake. The average repeat time for surface-rupturing earthquakes on the San Andreas fault in the Coachella Valley is 215 ?? 25 years, whereas the elapsed time since the most recent event is 326 ?? 35 years. This suggests the southernmost San Andreas fault zone likely is very near failure. The Thousand Palms Oasis site is underlain by a series of six channels cut and filled since about A.D. 800 that cross the fault at high angles. A channel margin about 900 years old is offset right laterally 2.0 ?? 0.5 m, indicating a slip rate of 4 ?? 2 mm/yr. This slip rate is low relative to geodetic and other geologic slip rate estimates (26 ?? 2 mm/yr and about 23-35 mm/yr, respectively) on the southernmost San Andreas fault zone, possibly because (1) the site is located in a small step-over in the fault trace and so the rate is not be representative of the Mission Creek fault, (2) slip is partitioned northward from the San Andreas fault and into the eastern California shear zone, and/or (3) slip is partitioned onto the Banning strand of the San Andreas fault zone.

Environmental assessment of water, sediment, and biota collected from the Bear Creek watershed, Colusa County, California

USGS Publications Warehouse

Rytuba, James J.; Hothem, Roger L.; Brussee, Brianne E.; Goldstein, Daniel; May, Jason T.

2015-01-01

The Cache Creek watershed lies within California's North Coast Range, an area with abundant geologic sources of mercury (Hg) and a long history of Hg contamination (Rytuba, 2000). Bear Creek, Cache Creek, and the North Fork of Cache Creek are the major streams of the Cache Creek watershed, encompassing 2978 km2. The Cache Creek watershed contains soils naturally enriched in Hg as well as natural springs (both hot and cold) with varying levels of aqueous Hg (Domagalski and others, 2004, Suchanek and others, 2004, Holloway and others 2009). All three tributaries are known to be significant sources of anthropogenically derived Hg from historic mines, both Hg and gold (Au), and associated ore storage/processing sites and facilities (Slotton and others, 1995, 2004; CVRWQCB, 2003; Schwarzbach and others, 2001; Gassel and others, 2005; Suchanek and others., 2004, 2008a, 2009). Historically, two of the primary sources of mercury contamination in the upper part of Bear Creek have been the Rathburn and Petray Hg Mines. The Rathburn Hg mine was discovered and initially mined in the early 1890s. The Rathburn and the more recently developed Petray open pit mines are localized along fault zones in serpentinite that has been altered and cut by quartz and chalcedony veins. Cold saline-carbonate springs are located perepheral to the Hg deposits and effluent from the springs locally has high concentrations of Hg (Slowey and Rytuba, 2008). Several ephemeral tributaries to Bear Creek drain the mine area which is located on federal land managed by the U.S. Bureau of Land Management (USBLM). The USBLM requested that the U.S. Geological Survey (USGS) measure and characterize Hg and other geochemical constituents in sediment, water, and biota to establish baseline information prior to remediation of the Rathburn and Petray mines. Samples sites were established in Bear Creek upstream and downstream from the mine area. This report is made in response to the USBLM request, the lead agency mandated to conduct a Comprehensive Environmental Response, Compensation, and Liability Act (CERCLA) - Removal Site Investigation (RSI). The RSI applies to the possible removal of Hg-contaminated mine waste from Bear Creek. This report summarizes data obtained from field sampling of water, sediment, and biota in Bear Creek, above input from the mine area and downstream from the Rathburn-Petray mine area to the confluence with Cache Creek. Our results permit a preliminary assessment of the chemical constituents that could elevate levels of monomethyl Hg (MMeHg) in Bear Creek and its uptake by biota and provide baseline information for comparison to conditions after mine remediation is completed.

ANTIOXIDANT ENZYMES, POTENTIAL VIRULENT FACTORS, IN DIFFERENT STRAINS OF THE OYSTER PROTOZOAN PARASITE, PERKINSUS MARINUS

EPA Science Inventory

The oyster protozoan parasite, Perkinsus marinus, is one of the two important parasites causing severe mortality in the eastern oysters (Crassostrea virginica) on the US east coast. Our recent study suggests that P. marinus cells and its extracellular products (ECP) could scaveng...

Comparison of different methods for isolation of bacterial DNA from retail oyster tissues

USDA-ARS?s Scientific Manuscript database

Oysters are filter-feeders that bio-accumulate bacteria in water while feeding. To evaluate the bacterial genomic DNA extracted from retail oyster tissues, including the gills and digestive glands, four isolation methods were used. Genomic DNA extraction was performed using the Allmag™ Blood Genomic...

The eastern oyster genome: A resource for comparative genomics in shellfish aquaculture species

USDA-ARS?s Scientific Manuscript database

Oyster aquaculture is an important sector of world food production. As such, it is imperative to develop a high quality reference genome for the eastern oyster, Crassostrea virginica, to assist in the elucidation of the genomic basis of commercially important traits. All genetic, gene expression and...

AN OVACYSTIS-LIKE CONDITION IN THE AMERICAN OYSTER CRASSOSTREA VIRGINICA GMELIN FROM THE NORTHEASTERN GULF OF MEXICO

EPA Science Inventory

Histological examination of the eastern oyster, Crassostrea virginica, from a study in Pensacola Bay, Florida, revealed two cases of abnormally large, basophilic ova that resemble ovacystis disease previously reported in oysters from Maine and Long Island. The hypertrophied gamet...

Growth, morphometrics and nutrient content of farmed eastern oysters, Crassostrea virginica (Gmelin), in New Hampshire, USA

EPA Science Inventory

When harvested, oysters represent a removal from the ecosystem of nutrients such as nitrogen (N)and carbon (C). A number of factors potentially affect nutrient content, but a quantitative understanding across the geographical range of the eastern oysters is lacking. This study wa...

COMPARISON OF IN VITRO-CULTURED AND WILD-TYPE PERKINSUS MARINUS III. FECAL ELIMINATION AND ITS ROLE IN TRANSMISSION

EPA Science Inventory

Perkinsus marinus, a pathogen of the eastern oyster Crassostrea virginica, is transmitted directly among oysters. Previous studies found viable P. marinus parasites in the feces and
pseudofeces of oysters within hours of injection with parasites, suggesting that the parasite ...

FACTORS INFLUENCING IN VITRO KILLING OF BACTERIA BY HEMOCYTES OF THE EASTERN OYSTER (CRASSOSTREA VIRGINICA)

EPA Science Inventory

A tetrazolium dye reduction assay was used to study factors governing killing of bacteria by oyster hemocytes. In vitro tests were performed on bacterial strains by using hemocytes from oysters collected from the same location in winter and summer. Vibrio parahaemolyticus strains...

Top-down control of phytoplankton by oysters in Chesapeake Bay, USA: Comment on Pomeroy et al. (2006)

EPA Science Inventory

Pomeroy et al. (2006) proposed that temporal and spatial mismatches between eastern oyster filtration and phytoplankton abundance will preclude restored stocks of eastern oysters from reducing the severity of hypoxia in the deep channel of central Chesapeake Bay. We refute this c...

PROGRESSION OF DISEASES CAUSED BY THE OYSTER PARASITES, PERKINSUS MARINUS AND HAPLOSPORIDIUM NELSONI IN CRASSOSTREA VIRGINICA ON CONSTRUCTED INTERTIDAL REEFS

EPA Science Inventory

The progression of diseases caused by the oyster parasites, Perkinsus marinus and Haplosporidium nelsoni, were evaluated by periodic sampling (May 1994 - December 1995) of oysters, Crassostrea virginica, on an artificial reef located in the Piankatank River, Virginia. The infecti...

Digital PCR for Quantifying Norovirus in Oysters Implicated in Outbreaks, France.

PubMed

Polo, David; Schaeffer, Julien; Fournet, Nelly; Le Saux, Jean-Claude; Parnaudeau, Sylvain; McLeod, Catherine; Le Guyader, Françoise S

2016-12-01

Using samples from oysters clearly implicated in human disease, we quantified norovirus levels by using digital PCR. Concentrations varied from 43 to 1,170 RNA copies/oyster. The analysis of frozen samples from the production area showed the presence of norovirus 2 weeks before consumption.

SURVEY OF OYSTERS CRASSOSTREA VIRGINICA FROM TAMPA BAY, FLORIDA: ASSOCIATIONS OF INTERNAL DEFENSE MEASUREMENTS WITH CONTAMINANT BURDENS

EPA Science Inventory

Oysters from 16 sites in Tampa Bay, Florida, were collected during a 6-week period in winter 1993 and analyzed for both biological characteristics and tissue chemical concentrations. Using previous sediment contamination and toxicity data, oyster tissues from the selected sites w...

Shell Games. VORTEX: Virginia's Oyster Reef Teaching EXperience.

ERIC Educational Resources Information Center

Harding, Juliana M.; Mann, Roger; Clark, Vicki P.

This document introduces Virginia's Oyster Reef Teaching EXperience (VORTEX), which is an interdisciplinary program focusing on the importance of oyster reef communities in the Chesapeake Bay ecosystem. The VORTEX program uses field and laboratory experiences supported by multimedia instruction. This document presents an overview on the biology of…

21 CFR 161.136 - Olympia oysters.

Code of Federal Regulations, 2011 CFR

2011-04-01

... 21 Food and Drugs 2 2011-04-01 2011-04-01 false Olympia oysters. 161.136 Section 161.136 Food and Drugs FOOD AND DRUG ADMINISTRATION, DEPARTMENT OF HEALTH AND HUMAN SERVICES (CONTINUED) FOOD FOR HUMAN... and conform to the definition and standard of identity prescribed for oysters in § 161.130. ...