Sample records for zooplankton community composition

  1. FORAGE FISH AND ZOOPLANKTON COMMUNITY COMPOSITION IN WESTERN LAKE SUPERIOR

    EPA Science Inventory

    We assessed the abundance, size, and species composition of the fish and zooplankton communities of western Lake Superior during 1996 and 1997. Data were analyzed for 3 ecoregions (Duluth-Superior (1), Apostle Islands (2), Minnesota coast (3) differing in lake bathymetry, phsiodo...

  2. Seasonal variation in the biochemical compositions of phytoplankton and zooplankton communities in the southwestern East/Japan Sea

    NASA Astrophysics Data System (ADS)

    Jo, Naeun; Kang, Jae Joong; Park, Won Gyu; Lee, Bo Ram; Yun, Mi Sun; Lee, Jang Han; Kim, Su Min; Lee, Dasom; Joo, HuiTae; Lee, Jae Hyung; Ahn, So Hyun; Lee, Sang Heon

    2017-09-01

    The macromolecular composition of phytoplankton communities and the proximate composition of zooplankton communities were measured monthly in the southwestern East/Japan Sea from April to November 2014 in order to identify seasonal changes in, and relationships among, the biochemical compositions in both phytoplankton and zooplankton. The carbohydrate content of phytoplankton was highest in June, whereas the protein content was highest in August and lipids were highest in April. Overall, carbohydrates were dominant (53.2 ± 12.5%) in the macromolecular composition of phytoplankton during the study period. This composition is believed to result from the dominance of diatoms and/or nutrient-depleted conditions. In comparison, the protein level of zooplankton was highest in November, whereas lipids were slightly higher in May than other months. Overall, proteins were the dominant organic compounds (47.9±8.6% DW) in zooplankton communities, whereas lipids were minor components (5.5±0.6% DW). The high protein content of zooplankton might be related to the abundance of copepods, whereas the low lipid content might be due to a relatively high primary production that could provide a sufficient food supply for zooplankton so that they do not require high lipid storage. A significant positive correlation (r=0.971, n=7, p<0.01) was found between the lipid compositions of phytoplankton and zooplankton during our study period with a time lag, which is consistent with the findings from previous studies. More detailed studies on the biochemical composition of phytoplankton and zooplankton are needed to better understand the East/Japan Sea ecosystem's response to the many environmental changes associated with global warming.

  3. Seasonal Phenology of Zooplankton Composition in the Southeastern Bering Sea, 2008-2010

    NASA Astrophysics Data System (ADS)

    Eisner, L. B.; Pinchuk, A. I.; Harpold, C.; Siddon, E. C.; Mier, K.

    2016-02-01

    The availability of large crustacean zooplankton prey is critical to the condition and survival of forage fish (e.g., age-0 Walleye Pollock), sea birds, and marine mammals in the eastern Bering Sea. Zooplankton community composition and abundances of large lipid-rich copepods (e.g., Calanus spp.) have been evaluated for single seasons, but few studies have investigated seasonal variations in this region. Here, we investigate seasonal changes in taxa (community structure), stage composition (where appropriate), and diversity from spring through late summer/early fall over three consecutive colder than average years. Zooplankton taxonomic samples were collected with oblique bongo tows over the water column during spring (April-May), mid-summer (June-July) and late summer/early fall (August-September) across the southeastern Bering Sea shelf in 2008-2010. Zooplankton abundances were evaluated by oceanographic region, season and year, and related to water mass characteristics (temperature and salinity) and other environmental drivers. Finally, zooplankton phenology was compared to changes in forage fish composition to determine potential overlap of fish predators and zooplankton prey.

  4. Changes in zooplankton community, and seston and zooplankton fatty acid profiles at the freshwater/saltwater interface of the Chowan River, North Carolina

    PubMed Central

    Rinchard, Jacques; Kimmel, David G.

    2017-01-01

    The variability in zooplankton fatty acid composition may be an indicator of larval fish habitat quality as fatty acids are linked to fish larval growth and survival. We sampled an anadromous fish nursery, the Chowan River, during spring of 2013 in order to determine how the seston fatty acid composition varied in comparison with the zooplankton community composition and fatty acid composition during the period of anadromous larval fish residency. The seston fatty acid profiles showed no distinct pattern in relation to sampling time or location. The mesozooplankton community composition varied spatially and the fatty acid profiles were typical of freshwater species in April. The Chowan River experienced a saltwater intrusion event during May, which resulted in brackish water species dominating the zooplankton community and the fatty acid profile showed an increase in polyunsaturated fatty acids (PUFA), in particular eicosapentaenoic acid (EPA) and docosahexaenoic acid (DHA). The saltwater intrusion event was followed by an influx of freshwater due to high precipitation levels in June. The zooplankton community composition once again became dominated by freshwater species and the fatty acid profiles shifted to reflect this change; however, EPA levels remained high, particularly in the lower river. We found correlations between the seston, microzooplankton and mesozooplankton fatty acid compositions. Salinity was the main factor correlated to the observed pattern in species composition, and fatty acid changes in the mesozooplankton. These data suggest that anadromous fish nursery habitat likely experiences considerable spatial variability in fatty acid profiles of zooplankton prey and that are correlated to seston community composition and hydrodynamic changes. Our results also suggest that sufficient prey density as well as a diverse fatty acid composition is present in the Chowan River to support larval fish production. PMID:28828262

  5. Examining shifts in zooplankton community as a response of environmental change in Lakes

    NASA Astrophysics Data System (ADS)

    Ghadouani, Anas; Mines, Conor; Legendre, Pierre; Yan, Norman

    2014-05-01

    We examined 20 years of zooplankton samples from Harp Lake for shifts in zooplankton variability following invasion by zooplankton predator Bythotrephes longimanus, using organism body size—as measured at high resolution by Laser Optical Plankton Counter (LOPC)—as the primary metric of investigation. A period of transitory high variability in the 2yr post-invasion was observed for both body size compositional variability and aggregate variability metrics, with both measures of variability shifting from low or intermediate to high variability immediately following invasion, before shifting again to intermediate variability, 2 yr post-invasion. Aggregate and compositional variability dynamics were also considered in combination over the study period, revealing that the period of transitory high variability coincided with a shift from a community-wide stasis variability pattern to one of asynchrony, before a shift back to stasis 2 yr post-invasion. These dynamics were related to changes in the significant zooplankton species within the Harp Lake community over the pre- and post- invasion periods, and are likely to be indicative of changes in the stability in the zooplankton community following invasion by Bythotrephes. The dual consideration of aggregate and compositional variability as measured by LOPC was found to provide a valuable means to assess the ecological effects of biological invasion on zooplankton communities as a whole, extending our knowledge of the effects of invasion beyond that already revealed through more traditional taxonomic investigation.

  6. Zooplankton species composition, abundance and biomass on the eastern Bering Sea shelf during summer: The potential role of water-column stability and nutrients in structuring the zooplankton community

    NASA Astrophysics Data System (ADS)

    Coyle, Kenneth O.; Pinchuk, Alexei I.; Eisner, Lisa B.; Napp, Jeffrey M.

    2008-08-01

    The southeastern Bering Sea sustains one of the largest fisheries in the United States, as well as wildlife resources that support valuable tourist and subsistence economies. The fish and wildlife populations in turn are sustained by a food web linking primary producers to apex predators through the zooplankton community. Recent shifts in climate toward warmer conditions may threaten these resources by altering productivity and trophic relationships in the ecosystem on the southeastern Bering Sea shelf. We examined the zooplankton community near the Pribilof Islands and on the middle shelf of the southeastern Bering Sea in summer of 1999 and 2004 to document differences and similarities in species composition, abundance and biomass by region and year. Between August 1999 and August 2004, the summer zooplankton community of the middle shelf shifted from large to small species. Significant declines were observed in the biomass of large scyphozoans ( Chrysaora melanaster), large copepods ( Calanus marshallae), arrow worms ( Sagitta elegans) and euphausiids ( Thysanoessa raschii, T. inermis) between 1999 and 2004. In contrast, significantly higher densities of the small copepods ( Pseudocalanus spp., Oithona similis) and small hydromedusae ( Euphysa flammea) were observed in 2004 relative to 1999. Stomach analyses of young-of-the-year (age 0) pollock ( Theragra chalcogramma) from the middle shelf indicated a dietary shift from large to small copepods in 2004 relative to 1999. The shift in the zooplankton community was accompanied by a 3-fold increase in water-column stability in 2004 relative to 1999, primarily due to warmer water above the thermocline, with a mean temperature of 7.3 °C in 1999 and 12.6 °C in 2004. The elevated water-column stability and warmer conditions may have influenced the zooplankton composition by lowering summer primary production and selecting for species more tolerant of a warm, oligotrophic environment. A time series of temperature from

  7. Metagenetic Sequencing of Zooplankton Communities in the High-Diversity Central North Pacific

    NASA Astrophysics Data System (ADS)

    Matthews, S. A.; van Woudenberg, L.; Iacchei, M.; Lenz, P. H.; Goetze, E.

    2016-02-01

    Marine zooplankton are important intermediate trophic level consumers in the ocean, and the subtropical North Pacific holds global maxima in species diversity for these communities. Zooplankton assemblages in this region include several species complexes, with many understudied and morphologically cryptic species. We used metagenetic sequencing to characterize zooplankton community composition across depth (0-1500m) at an open ocean time series site in the central North Pacific (Station ALOHA), using depth-stratified 1m2 MOCNESS samples that were size fractionated into 5 size classes (0.2-0.5 mm, 0.5-1 mm, 1-2 mm, 2-5 mm, >5 mm). Our goals were to quantify the fraction of the community that is currently undescribed, identify taxonomic groups that contain large numbers of undescribed species and may be important to biogeochemical cycling in the ocean, and establish a metagenetic method that can be used to effectively characterize the species richness of epipelagic and mesopelagic communities in this region. Amplicons from several DNA loci, including mitochondrial cytochrome c oxidase subunit I and 12S rRNA, and nuclear 18S and 28S rRNA genes were sequenced on the MiSeq Illumina platform to characterize community composition. We evaluate species composition across metagenetic marker regions, pelagic depth zones, day and night-time MOCNESS tows, and compare our findings with prior species lists from the region. Our results are an important contribution to establishing standardized metagenetic methods for marine zooplankton communities.

  8. Zooplankton communities in Cenderawasih Bay National Park, West Papua: can their composition be used to predict whale shark Rhincodon typus Smith, 1828 appearance frequencies?

    NASA Astrophysics Data System (ADS)

    Marliana, S. N.; Bataona, M.; Ihsan, E. N.

    2018-03-01

    The use of lift net fishing vessels in Cenderawasih Bay National Park (CBNP) along with the increased popularity of CBNP as an ecotourism area is suspected to have an impact on the behavior and population of its whale sharks Rhincodon typus Smith, 1828. The differing frequency of whale shark appearances along the waters of CBNP has been alleged to be related to the distribution of the whale sharks’ food sources, one of which is zooplankton. This preliminary research aimed to investigate the composition of the zooplankton community in CBNP based on distance from the coast and difference in locations, and to use the pattern of zooplankton compositional variation as a basis for indication of the frequency of whale shark appearances. There were clear differences in the composition and diversity of zooplankton communities among sampling stations, but these differences were not strong enough to infer the cause of the different whale shark appearance frequencies in different locations. Nevertheless, the waters of CBNP had an equal availability of zooplankton for whale sharks. With the increasing popularity of whale shark tourism, understanding the species’ feeding habits is critical to the sustainability of both the industry and the enigmatic species on which it depends.

  9. Variability of zooplankton communities at Condor seamount and surrounding areas, Azores (NE Atlantic)

    NASA Astrophysics Data System (ADS)

    Carmo, Vanda; Santos, Mariana; Menezes, Gui M.; Loureiro, Clara M.; Lambardi, Paolo; Martins, Ana

    2013-12-01

    Seamounts are common topographic features around the Azores archipelago (NE Atlantic). Recently there has been increasing research effort devoted to the ecology of these ecosystems. In the Azores, the mesozooplankon is poorly studied, particularly in relation to these seafloor elevations. In this study, zooplankton communities in the Condor seamount area (Azores) were investigated during March, July and September 2010. Samples were taken during both day and night with a Bongo net of 200 µm mesh that towed obliquely within the first 100 m of the water column. Total abundance, biomass and chlorophyll a concentrations did not vary with sampling site or within the diel cycle but significant seasonal variation was observed. Moreover, zooplankton community composition showed the same strong seasonal pattern regardless of spatial or daily variability. Despite seasonal differences, the zooplankton community structure remained similar for the duration of this study. Seasonal variability better explained our results than mesoscale spatial variability. Spatial homogeneity is probably related with island proximity and local dynamics over Condor seamount. Zooplankton literature for the region is sparse, therefore a short review of the most important zooplankton studies from the Azores is also presented.

  10. A decade of predatory control of zooplankton species composition of Lake Michigan

    USGS Publications Warehouse

    Makarewicz, Joseph C.; Bertram, Paul; Lewis, Theodore; Brown, Edward H.

    1995-01-01

    From 1983 to 1992, 71 species representing 38 genera from the Calanoida, Cladocera, Cyclopoida, Mysidacea, Rotifera, Mollusca and Harpacticoida comprised the offshore zooplankton community of Lake Michigan. Our data demonstrate that the composition and abundance of the calanoid community after 1983 is not unlike that of 1960s and that species diversity of the calanoid community is more diverse than the cladoceran community in the 1990s as compared to the early 1980s. Even though the relative biomass of the cladocerans has remained similar over the 1983-1993 period, the species diversity and evenness of the Cladocera community in the early 1990s is unlike anything that has been previously reported for Lake Michigan. Cladocera dominance is centered in one species, Daphnia galeata mendotae, and only three species of Cladocera were observed in the pelagic region of the lake in 1991 and 1992. Nutrient levels, phytoplankton biomass, and the abundance of planktivorous alewife and bloater chub and Bythotrephes are examined as possible causes of these changes in zooplankton species composition. The increase in Rotifera biomass, but not Crustacea, was correlated with an increase in relative biomass of unicellular algae. Food web models suggest Bythotrephes will cause Lake Michigan's plankton to return to a community similar to that of the 1970s; that is Diaptomus dominated. Such a change has occurred. However, correlational analysis suggest that alewife and bloater chubs (especially juveniles) are affecting size and biomass of larger species of zooplankton as well as Bythotrephes.

  11. Lake Ontario zooplankton in 2003 and 2008: Community changes and vertical redistribution

    USGS Publications Warehouse

    Rudstam, Lars G.; Holeck, Kristen T.; Bowen, Kelly L.; Watkins, James M.; Weidel, Brian C.; Luckey, Frederick J.

    2014-01-01

    Lake-wide zooplankton surveys are critical for documenting and understanding food web responses to ecosystem change. Surveys in 2003 and 2008 during the binational intensive field year in Lake Ontario found that offshore epilimnetic crustacean zooplankton declined by a factor of 12 (density) and factor of 5 (biomass) in the summer with smaller declines in the fall. These declines coincided with an increase in abundance of Bythotrephes and are likely the result of direct predation by, or behavioral responses to this invasive invertebrate predator. Whole water column zooplankton density also declined from 2003 to 2008 in the summer and fall (factor of 4), but biomass only declined in the fall (factor of 2). The decline in biomass was less than the decline in density because the average size of individual zooplankton increased. This was due to changes in the zooplankton community composition from a cyclopoid/bosminid dominated community in 2003 to a calanoid dominated community in 2008. The increase in calanoid copepods was primarily due to the larger species Limnocalanus macrurus and Leptodiaptomus sicilis. These cold water species were found in and below the thermocline associated with a deep chlorophyll layer. In 2008, most of the zooplankton biomass resided in or below the thermocline during the day. Increased importance of copepods in deeper, colder water may favor Cisco and Rainbow Smelt over Alewife because these species are better adapted to cold temperatures than Alewife.

  12. Trophic accumulation of PSP toxins in zooplankton during Alexandrium fundyense blooms in Casco Bay, Gulf of Maine, April-June 1998. II. . Zooplankton abundance and size-fractionated community composition

    NASA Astrophysics Data System (ADS)

    Turner, Jefferson T.; Doucette, Gregory J.; Keafer, Bruce A.; Anderson, Donald M.

    2005-09-01

    During spring blooms of the toxic dinoflagellate Alexandrium fundyense in Casco Bay, Maine in 1998, we investigated vectorial intoxication of various zooplankton size fractions with PSP toxins, including zooplankton community composition from quantitative zooplankton samples (>102 μm), as well as zooplankton composition in relation to toxin levels in various size fractions (20-64, 64-100, 100-200, 200-500, >500 μm). Zooplankton abundance in 102 μm mesh samples was low (most values<10,000 animals m -3) from early April through early May, but increased to maxima in mid-June (cruise mean=121,500 animals m -3). Quantitative zooplankton samples (>102 μm) were dominated by copepod nauplii, and Oithona similis copepodites and adults at most locations except for those furthest inshore. At these inshore locations, Acartia hudsonica copepodites and adults were usually dominant. Larger copepods such as Calanus finmarchicus, Centropages typicus, and Pseudocalanus spp. were found primarily offshore, and at much lower abundances than O. similis. Rotifers, mainly present from late April to late May, were most abundant inshore. The marine cladoceran Evadne nordmani was sporadically abundant, particularly in mid-June. Microplankton in 20-64 μm size fractions was generally dominated by A. fundyense, non-toxic dinoflagellates, and tintinnids. Microplankton in 64-100 μm size fractions was generally dominated by larger non-toxic dinoflagellates, tintinnids, aloricate ciliates, and copepod nauplii, and in early May, rotifers. Some samples (23%) in the 64-100 μm size fractions contained abundant cells of A. fundyense, presumably due to sieve clogging, but most did not contain A. fundyense cells. This suggests that PSP toxin levels in those samples were due to vectorial intoxication of microzooplankters such as heterotrophic dinoflagellates, tintinnids, aloricate ciliates, rotifers, and copepod nauplii via feeding on A. fundyense cells. Dominant taxa in zooplankton fractions varied

  13. Seasonal variation of zooplankton abundance and community structure in Prince William Sound, Alaska, 2009-2016

    NASA Astrophysics Data System (ADS)

    McKinstry, Caitlin A. E.; Campbell, Robert W.

    2018-01-01

    Large calanoid copepods and other zooplankters comprise the prey field for ecologically and economically important predators such as juvenile pink salmon, herring, and seabirds in Prince William Sound (PWS).​ From 2009-2016, the Gulf Watch Alaska program collected zooplankton 5-10 times each year at 12 stations in PWS to establish annual patterns. Surveys collected 188 species of zooplankton with Oithona similis, Limacina helicina, Pseudocalanus spp., and Acartia longiremis as the most common species present in 519 samples. Generalized additive models assessed seasonal abundance and showed peak abundance in July (mean: 9826 no. m-3 [95% CI: 7990-12,084]) and lowest abundance in January (503 no. m-3 [373 to 678]). Significantly higher zooplankton abundance occurred in 2010 (542 no. m-3 ± 55 SE) and lowest in 2013 (149 no. m-3 ± 13). The species composition of communities, determined via hierarchical cluster analysis and indicator species analysis, produced six distinct communities based on season and location. The winter community, characterized by warm-water indicator species including Mesocalanus tenuicornis, Calanus pacificus, and Corycaeus anglicus, diverged into four communities throughout the spring and summer. The first spring community, characterized by copepods with affinities for lower salinities, occurred sound-wide. The second spring community, comprised of planktonic larvae, appeared sporadically in PWS bays in 2011-2013. Spring and summer open water stations were defined by the presence of large calanoid copepods. A summer community including the most abundant taxa was common in 2010 and 2011, absent in 2013, then sporadically appeared in 2014 and 2015 suggesting interannual variability of zooplankton assemblages. The zooplankton community shifted to a uniform assemblage characterized by cnidarians in the early autumn. Community assemblages showed significant correlations to a set of environmental variables including SST, mixed layer depth

  14. Community response of zooplankton to oceanographic changes (2002-2012) in the central/southern upwelling system of Chile

    NASA Astrophysics Data System (ADS)

    Medellín-Mora, Johanna; Escribano, Ruben; Schneider, Wolfgang

    2016-03-01

    A 10-year time series (2002-2012) at Station 18 off central/southern Chile allowed us to study variations in zooplankton along with interannual variability and trends in oceanographic conditions. We used an automated analysis program (ZooImage) to assess changes in the mesozooplankton size structure and the composition of the taxa throughout the entire community. Oceanographic conditions changed over the decade: the water column became less stratified, more saline, and colder; the mixed layer deepened; and the oxygen minimum zone became shallower during the second half of the time series (2008-2012) in comparison with the first period (2002-2007). Both the size structure and composition of the zooplankton were significantly associated with oceanographic changes. Taxonomic and size diversity of the zooplankton community increased to the more recent period. For the second period, small sized copepods (<1 mm) decreased in abundance, being replaced by larger sized (>1.5 mm) and medium size copepods (1-1.5 mm), whereas euphausiids, decapod larvae, appendicularian and ostracods increased their abundance during the second period. These findings indicated that the zooplankton community structure in this eastern boundary ecosystem was strongly influenced by variability of the upwelling process. Thus, climate-induced forcing of upwelling trends can alter the zooplankton community in this highly productive region with potential consequences for the ecosystem food web.

  15. Effects of pond management on biodiversity patterns and community structure of zooplankton in urban environments.

    PubMed

    Suski, Jamie G; Swan, Christopher M; Salice, Christopher J; Wahl, Charles F

    2018-04-01

    As urban areas continue expanding, major cities become connected forming megacities. Urban encroachment into natural areas transforms the landscape into a built environment with heterogeneously distributed patches of novel habitat. Community structure within novel habitats is influenced by anthropogenic factors including fragmentation and species interactions. Alterations in complex biodiversity patterns may be used to assess how urban stressors impact community assemblages which, ultimately, may inform sustainable management decisions. To manage algal blooms, Aquashade® is applied directly to ponds. We investigated the effects of Aquashade®, nutrient loading and dispersal on local species diversity and compositional turnover of zooplankton communities from suburban ponds in Columbia, MD, USA using a mesocosm approach. We found that Aquashade® acted as an environmental filter by increasing local species diversity and decreasing compositional turnover. This ultimately could have an overall homogenizing effect on the regional species pool (or γ-diversity). The same pattern was observed in mesocosms that received simulated dispersal events of zooplankton. Nutrients, overall, increased autotrophic biomass and while Aquashade® had no effect on autotrophic biomass, the interaction of nutrients and Aquashade® similarly caused a homogenization of the zooplankton community. Additionally, there was an overall increase in cladoceran ephippia in mesocosms receiving Aquashade® compared to those not, suggesting there is a 'trigger' switching cladocerans from parthenogenic to sexual reproduction. Taken together, our results show the application of Aquashade®, nutrient loading and dispersal shift biodiversity patterns in urban zooplankton communities. We hypothesize these shifts originate at the resource level through alterations in the phytoplankton community either through composition or nutritive value in ponds receiving Aquashade®. Our study illustrates the importance

  16. SPATIAL AND TEMPORAL VARIABILITY IN ZOOPLANKTON COMMUNITY DYNAMICS IN THREE URBANIZED BAYOUS OF THE PENSACOLA BAY SYSTEM, FLORIDA, USA

    EPA Science Inventory

    Spatial and temporal patterns in zooplankton community composition and abundance in near-coastal areas of the Gulf of Mexico are not well understood. This survey provides information on spatial and temporal differences in zoolplankton community composition and abundance for a coa...

  17. Annual cycle of zooplankton abundance and species composition in Izmit Bay (the northeastern Marmara Sea)

    NASA Astrophysics Data System (ADS)

    Isinibilir, Melek; Kideys, Ahmet E.; Tarkan, Ahmet N.; Yilmaz, I. Noyan

    2008-07-01

    The monthly abundance, biomass and taxonomic composition of zooplankton of Izmit Bay (the northeastern Marmara Sea) were studied from October 2001 to September 2002. Most species within the zooplankton community displayed a clear pattern of succession throughout the year. Generally copepods and cladocerans were the most abundant groups, while the contribution of meroplankton increased at inner-most stations and dominated the zooplankton. Both species number ( S) and diversity ( H') were positively influenced by the increase in salinity of upper layers ( r = 0.30 and r = 0.31, p < 0.001, respectively), while chlorophyll a was negatively affected ( r = -0.36, p < 0.001). Even though Noctiluca scintillans had a significant seasonality ( F11,120 = 8.45, p < 0.001, ANOVA), abundance was not related to fluctuations in temperature and only chlorophyll a was adversely correlated ( r = -0.35, p < 0.001). In general, there are some minor differences in zooplankton assemblages of upper and lower layers. A comparison of the species composition and abundance of Izmit Bay with other Black Sea bays reveals a high similarity between them.

  18. The Interactive Effect of Multiple Stressors on Crustacean Zooplankton Communities in Montane Lakes

    NASA Astrophysics Data System (ADS)

    Brittain, Jeffrey T.; Strecker, Angela L.

    2018-02-01

    Nonnative fish introductions have altered thousands of naturally fishless montane lakes, resulting in cascading food web repercussions. Nitrogen deposition has been recognized as an anthropogenic contributor to acidification and eutrophication of freshwater ecosystems, which may affect the abundance and composition of planktonic communities. This study identified responses of zooplankton communities from two lakes (fish present versus absent) in Mount Rainier National Park to manipulations simulating an episodic disturbance of acidification and eutrophication via nitrogen addition in mesocosms. Zooplankton communities from lakes with different food web structure (i.e., fish present or absent) responded differently to the singular effects of acid and nitrogen addition. For instance, zooplankton biomass decreased in the acid treatment of the fishless lake experiment, but increased in response to acid in the fish-present experiment. In contrast, the combination of acid and nitrogen often resulted in weak responses for both lake types, resulting in nonadditive effects, i.e., the net effect of the stressors was in the opposite direction than predicted, which is known as a reversal or "ecological surprise." This experiment demonstrates the difficulty in predicting the interactive effects of multiple stressors on aquatic communities, which may pose significant challenges for habitat restoration through fish removal.

  19. Ocean acidification reduces demersal zooplankton that reside in tropical coral reefs

    NASA Astrophysics Data System (ADS)

    Smith, Joy N.; de'Ath, Glenn; Richter, Claudio; Cornils, Astrid; Hall-Spencer, Jason M.; Fabricius, Katharina E.

    2016-12-01

    The in situ effects of ocean acidification on zooplankton communities remain largely unexplored. Using natural volcanic CO2 seep sites around tropical coral communities, we show a threefold reduction in the biomass of demersal zooplankton in high-CO2 sites compared with sites with ambient CO2. Differences were consistent across two reefs and three expeditions. Abundances were reduced in most taxonomic groups. There were no regime shifts in zooplankton community composition and no differences in fatty acid composition between CO2 levels, suggesting that ocean acidification affects the food quantity but not the quality for nocturnal plankton feeders. Emergence trap data show that the observed reduction in demersal plankton may be partly attributable to altered habitat. Ocean acidification changes coral community composition from branching to massive bouldering coral species, and our data suggest that bouldering corals represent inferior daytime shelter for demersal zooplankton. Since zooplankton represent a major source of nutrients for corals, fish and other planktivores, this ecological feedback may represent an additional mechanism of how coral reefs will be affected by ocean acidification.

  20. The Lake Ontario zooplankton community before (1987-1991) and after (2001-2005) invasion-induced ecosystem change

    USGS Publications Warehouse

    Stewart, T.J.; Johannsson, O.E.; Holeck, K.; Sprules, W.G.; O'Gorman, R.

    2010-01-01

    We assessed changes in Lake Ontario zooplankton biomass, production, and community composition before (1987–1991) and after (2001–2005) invasion-induced ecosystem changes. The ecosystem changes were associated with establishment of invasive dreissenid mussels and invasive predatory cladocerans (Bythotrephes and Cercopagis). Whole-lake total epilimnetic plus metalimnetic zooplankton production declined by approximately half from 42.45 (g dry wt∙m−2∙ year−1) during 1987–1991 to 21.91 (g dry wt∙m−2∙ year−1) in 2003 and averaged 21.01 (g dry wt∙m−2∙ year−1) during 2001–2005. Analysis of two independent data sets indicates that the mean biomass and biomass proportion of cyclopoid copepods declined while the same measures increased for the invasive predatory cladocerans. Changes in means and proportions of all other zooplankton groups were not consistent between the data sets. Cyclopoid copepod biomass and production declined by factors ranging from 3.6 to 5.7. Invasive predatory cladoceran biomass averaged from 5.0% to 8.0% of the total zooplankton biomass. The zooplankton community was otherwise resilient to the invasion-induced disruption as zooplankton species richness and diversity were unaffected. Zooplankton production was likely reduced by declines in primary productivity but may have declined further due to increased predation by alewives and invasive predatory cladocerans. Shifts in zooplankton community structure were consistent with increased predation pressure on cyclopoid copepods by alewives and invasive predatory cladocerans. Predicted declines in the proportion of small cladocerans were not evident. This study represents the first direct comparison of changes in Lake Ontario zooplankton production before and after the invasion-induced disruption and will be important to food web-scale investigations of invasion effects.

  1. Zooplankton research off Peru: A review

    NASA Astrophysics Data System (ADS)

    Ayón, Patricia; Criales-Hernandez, Maria I.; Schwamborn, Ralf; Hirche, Hans-Jürgen

    2008-10-01

    A review of zooplankton studies conducted in Peruvian marine waters is given. After a short history of the development of zooplankton research off Peru, we review zooplankton methodology, taxonomy, biodiversity, spatial distribution, seasonal and interannual variability, trophodynamics, secondary production, and modelling. We review studies on several micro-, meso-, macro-, and meroplankton groups, and give a species list from both published and unpublished reports. Three regional zooplankton groups have been identified: (1) a continental shelf group dominated by Acartia tonsa and Centropages brachiatus; (2) a continental slope group characterized by siphonophores, bivalves, foraminifera and radiolaria; (3) and a species-rich oceanic group. The highest zooplankton abundances and biomasses were often found between 4-6°S and 14-16°S, where continental shelves are narrow. Species composition changes with distance from the shore. Species composition and biomass also vary strongly on short time scales due to advection, peaks of larval production, trophic interactions, and community succession. The relation of zooplankton to climatic variability (ENSO and multi-decadal) and fish stocks is discussed in the context of ecological regime shifts. An intermediate upwelling hypothesis is proposed, based on the negative effects of low upwelling intensity in summer or extremely strong and enduring winter upwelling on zooplankton abundance off Peru. According to this hypothesis, intermediate upwelling creates an optimal environmental window for zooplankton communities. Finally, we highlight important knowledge gaps that warrant attention in future.

  2. Cyanobacteria dominance influences resource use efficiency and community turnover in phytoplankton and zooplankton communities.

    PubMed

    Filstrup, Christopher T; Hillebrand, Helmut; Heathcote, Adam J; Harpole, W Stanley; Downing, John A

    2014-04-01

    Freshwater biodiversity loss potentially disrupts ecosystem services related to water quality and may negatively impact ecosystem functioning and temporal community turnover. We analysed a data set containing phytoplankton and zooplankton community data from 131 lakes through 9 years in an agricultural region to test predictions that plankton communities with low biodiversity are less efficient in their use of limiting resources and display greater community turnover (measured as community dissimilarity). Phytoplankton resource use efficiency (RUE = biomass per unit resource) was negatively related to phytoplankton evenness (measured as Pielou's evenness), whereas zooplankton RUE was positively related to phytoplankton evenness. Phytoplankton and zooplankton RUE were high and low, respectively, when Cyanobacteria, especially Microcystis sp., dominated. Phytoplankton communities displayed slower community turnover rates when dominated by few genera. Our findings, which counter findings of many terrestrial studies, suggest that Cyanobacteria dominance may play important roles in ecosystem functioning and community turnover in nutrient-enriched lakes. © 2014 John Wiley & Sons Ltd/CNRS.

  3. Changes in fatty acid and hydrocarbon composition of zooplankton assemblages related to environmental conditions

    DOE Office of Scientific and Technical Information (OSTI.GOV)

    Lambert, R.M.

    1989-01-01

    Changes in zooplankton fatty acid and hydrocarbon patterns are described in relation to changes in environmental conditions and species composition. The regulation of zooplankton abundance by sea nettle-ctenophore interaction was examined in a small Rhode Island coastal pond. Sea nettles were nettles were able to eliminate ctenophores from the pond and subsequently zooplankton abundance increased. During one increase in zooplankton abundance, it was found that polyunsaturated fatty acids decreased while monounsaturated fatty acids increased. It was concluded that this shift in biochemical pattern was due to food limitation. In addition, zooplankton fatty acids were used in multivariate discriminant analysis tomore » classify whether zooplankton were from coastal or estuarine environments. Zooplankton from coastal environments were characterized by higher monounsaturate fatty acids. Zooplankton hydrocarbon composition was affected by species composition and by pollution inputs. The presence of Calanus finmarchicus was detected by increased levels of pristane.« less

  4. The response of zooplankton communities to the 2016 extreme hydrological cycle in floodplain lakes connected to the Yangtze River in China.

    PubMed

    Zhang, Kun; Xu, Mei; Wu, Qili; Lin, Zhi; Jiang, Fangyuan; Chen, Huan; Zhou, Zhongze

    2018-06-04

    The Huayanghe Lakes play an important role in the Yangtze floodplain in China and had extremely high water levels during the summer of 2016. Monitoring data was collected in an effort to understand the impact of this change on the crustacean zooplankton composition and abundance and the biomass variation in the Huayanghe Lakes between a regular hydrological cycle (RHC) and an extreme hydrological cycle (EHC). The crustacean zooplankton community composition, abundance, and biomass in the floodplain lakes were markedly affected by the water-level disturbance. The number of species was lower in the RHC, but the mean density and biomass decreased from 93.84 ± 13.29 ind./L and 6.11 ± 0.89 mg/L, respectively, in the RHC to 66.62 ± 10.88 ind./L and 1.22 ± 0.26 mg/L, respectively, in the EHC. Pearson correlations and redundancy analyses revealed the environmental factors with the most significant impact on the crustacean zooplankton community differed between the RHC and EHC cycles. Little previous information exists on the zooplankton in these lakes, and the present study provides data on the zooplankton composition, abundance, and biomass, both at baseline and in response to hydrological changes.

  5. Zooplankton in the Arctic outflow

    NASA Astrophysics Data System (ADS)

    Soloviev, K. A.; Dritz, A. V.; Nikishina, A. B.

    2009-04-01

    Climate changes in the Arctic cause the changes in the current system that may have cascading effect on the structure of plankton community and consequently on the interlinked and delicately balanced food web. Zooplankton species are by definition incapable to perform horizontal moving. Their transport is connected with flowing water. There are zooplankton species specific for the definite water masses and they can be used as markers for the different currents. That allows us to consider zooplankton community composition as a result of water mixing in the studied area. Little is known however about the mechanisms by which spatial and temporal variability in advection affect dynamics of local populations. Ice conditions are also very important in the function of pelagic communities. Melting time is the trigger to all "plankton blooming" processes, and the duration of ice-free conditions determines the food web development in the future. Fram Strait is one of the key regions for the Arctic: the cold water outflow comes through it with the East Greenland Current and meets warm Atlantic water, the West Spitsbergen Current, producing complicated hydrological situation. During 2007 and 2008 we investigated the structure functional characteristics of zooplankton community in the Fram Strait region onboard KV "Svalbard" (April 2007, April and May 2008) and RV "Jan Mayen" (May 2007, August 2008). This study was conducted in frame of iAOOS Norway project "Closing the loop", which, in turn, was a part of IPY. During this cruises multidisciplinary investigations were performed, including sea-ice observations, CTD and ADCP profiling, carbon flux, nutrients and primary production measurements, phytoplankton sampling. Zooplankton was collected with the Hydro-Bios WP2 net and MultiNet Zooplankton Sampler, (mouth area 0.25 m2, mesh size 180 um).Samples were taken from the depth strata of 2000-1500, 1500-1000, 1000-500,500-200, 200-100, 100-60, 60-30, 30-0 m. Gut fluorescence

  6. Zooplankton community analysis in the Changjiang River estuary by single-gene-targeted metagenomics

    NASA Astrophysics Data System (ADS)

    Cheng, Fangping; Wang, Minxiao; Li, Chaolun; Sun, Song

    2014-07-01

    DNA barcoding provides accurate identification of zooplankton species through all life stages. Single-gene-targeted metagenomic analysis based on DNA barcode databases can facilitate longterm monitoring of zooplankton communities. With the help of the available zooplankton databases, the zooplankton community of the Changjiang (Yangtze) River estuary was studied using a single-gene-targeted metagenomic method to estimate the species richness of this community. A total of 856 mitochondrial cytochrome oxidase subunit 1 (cox1) gene sequences were determined. The environmental barcodes were clustered into 70 molecular operational taxonomic units (MOTUs). Forty-two MOTUs matched barcoded marine organisms with more than 90% similarity and were assigned to either the species (similarity>96%) or genus level (similarity<96%). Sibling species could also be distinguished. Many species that were overlooked by morphological methods were identified by molecular methods, especially gelatinous zooplankton and merozooplankton that were likely sampled at different life history phases. Zooplankton community structures differed significantly among all of the samples. The MOTU spatial distributions were influenced by the ecological habits of the corresponding species. In conclusion, single-gene-targeted metagenomic analysis is a useful tool for zooplankton studies, with which specimens from all life history stages can be identified quickly and effectively with a comprehensive database.

  7. Zooplankton Distribution and Species Composition Along an Oxygen Gradient in Puget Sound, WA

    NASA Astrophysics Data System (ADS)

    Keister, J. E.; Essington, T.; Li, L.; Horne, J. K.; Sato, M.; Parker-Stetter, S. L.; Moriarty, P.

    2016-02-01

    Low dissolved oxygen (hypoxia) is one of the most pronounced, pervasive, and significant disturbances in marine ecosystems, yet our understanding of its effects is incomplete, particularly with respect to impacts on lower trophic levels. As part of a study of how hypoxia affects predator-prey relationships and energy flow through marine food webs, we are studying relationships between ocean chemistry and zooplankton in Puget Sound, Washington—a deep, seasonally hypoxic fjord in the Pacific Northwest that supports a productive and diverse pelagic community. From summer through fall in two years that differed in the timing and intensity of hypoxia, we conducted multi-frequency bioacoustic surveys, CTD casts, and depth-stratified zooplankton sampling to examine changes in distribution and species composition of animals in relation to oxygen concentrations. We exploited a natural gradient in oxygen along the axis of the fjord by sampling at moderately hypoxic and normoxic sites with otherwise similar hydrography and species composition to disentangle the effects of oxygen from changes in other environmental factors. Our results support the hypothesis that zooplankton species composition and vertical distributions are altered by hypoxia, but only when examined at the species and life-stage level. Relatively few taxa showed clear responses to hypoxia, and bioacoustic backscatter data (which was dominated by adult euphausiids and amphipods) indicated that those taxa were not affected by the levels of hypoxia we observed. Examination of net tow data revealed more subtle changes, including behavioral avoidance of low oxygen by some copepods and young euphausiid life stages. Overall, the high species diversity and relatively low susceptibility of many zooplankton to hypoxia in Puget Sound may confer ecosystem resilience to near-future projected changes in this region.

  8. Community composition, abundance and biomass of zooplankton in Zhangzi Island waters, Northern Yellow Sea

    NASA Astrophysics Data System (ADS)

    Yin, Jiehui; Zhang, Guangtao; Li, Chaolun; Wang, Shiwei; Zhao, Zengxia; Wan, Aiyong

    2017-09-01

    Samples were collected monthly from the sea area around Zhangzi Island, northern Yellow Sea, from July 2009 to June 2010. Vertical net towing was used to examine spatial and temporal variability in zooplankton abundance and biomass. Overall, Calanus sinicus and Saggita crassa were the dominant species found during the study period, while the amphipod Themisto gracilipes was dominant in winter and spring. Vast numbers of the ctenophore species of the genus Beroe were found in October and November. It was not possible to count them, but they constituted a large portion of the total zooplankton biomass. Zooplankton species diversity was highest in October, and species evenness was highest in April. Zooplankton abundance (non-jellyfish) and biomass were highest in June and lowest in August, with annual averages of 131.3 ind./m³ and 217.5 mg/m³, respectively. Water temperature may be responsible for the variations in zooplankton abundance and biomass. Beroe biomass was negatively correlated with other zooplankton abundance. Longterm investigations will be carried out to learn more about the influence of the environment on zooplankton assemblages.

  9. Amino acid composition reveals functional diversity of zooplankton in tropical lakes related to geography, taxonomy and productivity.

    PubMed

    Aranguren-Riaño, Nelson J; Guisande, Cástor; Shurin, Jonathan B; Jones, Natalie T; Barreiro, Aldo; Duque, Santiago R

    2018-07-01

    Variation in resource use among species determines their potential for competition and co-existence, as well as their impact on ecosystem processes. Planktonic crustaceans consume a range of micro-organisms that vary among habitats and species, but these differences in resource consumption are difficult to characterize due to the small size of the organisms. Consumers acquire amino acids from their diet, and the composition of tissues reflects both the use of different resources and their assimilation in proteins. We examined the amino acid composition of common crustacean zooplankton from 14 tropical lakes in Colombia in three regions (the Amazon floodplain, the eastern range of the Andes, and the Caribbean coast). Amino acid composition varied significantly among taxonomic groups and the three regions. Functional richness in amino acid space was greatest in the Amazon, the most productive region, and tended to be positively related to lake trophic status, suggesting the niche breadth of the community could increase with ecosystem productivity. Functional evenness increased with lake trophic status, indicating that species were more regularly distributed within community-wide niche space in more productive lakes. These results show that zooplankton resource use in tropical lakes varies with both habitat and taxonomy, and that lake productivity may affect community functional diversity and the distribution of species within niche space.

  10. Late-summer zooplankton community structure, abundance, and distribution in the Hudson Bay system (Canada) and their relationships with environmental conditions, 2003-2006

    NASA Astrophysics Data System (ADS)

    Estrada, Rafael; Harvey, Michel; Gosselin, Michel; Starr, Michel; Galbraith, Peter S.; Straneo, Fiammetta

    2012-08-01

    Zooplankton communities were examined for the first time in three different hydrographic regions of the Hudson Bay system (HBS) in early August to early September from 2003 to 2006. Sampling was conducted at 50 stations distributed along different transects located in Hudson Bay (HB), Hudson Strait (HS), and Foxe Basin (FB). Variations in zooplankton biomass, abundance, taxonomic composition, and diversity in relation to environmental variables were studied using multivariate techniques. During all sampling years, the total zooplankton biomass was on average four times lower in HB than in HS and FB. Clustering samples by their relative species compositions revealed no interannual variation in zooplankton community but showed a marked interregional variability between the three regions. Water column stratification explained the greatest proportion (25%) of this spatial variability. According to redundancy analysis (RDA), the zooplankton taxa that contribute most to the separation of the three regions are Microcalanus spp., Oithona similis, Oncaea borealis, Aeginopsis laurentii, Sagitta elegans, Fritillaria sp., and larvae of cnidaria, chaetognatha, and pteropoda in HB; hyperiid amphipods in FB; and Pseudocalanus spp. CI-CV, Calanus glacialis CI-CVI, Calanus finmarchicus CI-CVI, Calanus hyperboreus CV-CVI, Acartia longiremis CI-CV, Metridia longa N3-N6 CI-CIII CVIf, Eukrohnia hamata, larvae of echinodermata, mollusca, cirripedia, appendicularia, and polychaeta in the northwestern and southeastern HS transects. For the HB transect, the RDA analyzed allowed us to distinguish three regions (HB west, central, and east) with different environmental gradients and zooplankton assemblages, in particular higher concentration of Pseudocalanus spp. nauplii and CI-CVI, as well as benthic macrozooplankton and meroplankton larvae in western HB. In HS, Calanoid species (mainly C. finmarchicus and C. glacialis) were mostly observed at the north shore stations associated with the

  11. A Functional Approach to Zooplankton Communities in Mountain Lakes Stocked With Non-Native Sportfish Under a Changing Climate

    NASA Astrophysics Data System (ADS)

    Redmond, Laura E.; Loewen, Charlie J. G.; Vinebrooke, Rolf D.

    2018-03-01

    Cumulative impacts of multiple stressors on freshwater biodiversity and ecosystem function likely increase with elevation, thereby possibly placing alpine communities at greatest risk. Here, consideration of species traits enables stressor effects on taxonomic composition to be translated into potential functional impacts. We analyzed data for 47 taxa across 137 mountain lakes and ponds spanning large latitudinal (491 km) and elevational (1,399 m) gradients in western Canada, to assess regional and local factors of the taxonomic composition and functional structure of zooplankton communities. Multivariate community analyses revealed that small body size, clonal reproduction via parthenogenesis, and lack of pigmentation were species traits associated with both introduced non-native sportfish and also environmental conditions reflecting a warmer and drier climate—namely higher water temperatures, shallower water depths, and more chemically concentrated water. Thus, historical introductions of sportfish appear to have potentially induced greater tolerance in zooplankton communities of future climatic warming, especially in previously fishless alpine lakes. Although alpine lake communities occupied a relatively small functional space (i.e., low functional diversity), they were contained within the broader regional functional structure. Therefore, our findings point to the importance of dispersal by lower montane species to the future functional stability of alpine communities.

  12. Determinants of community structure of zooplankton in heavily polluted river ecosystems

    NASA Astrophysics Data System (ADS)

    Xiong, Wei; Li, Jie; Chen, Yiyong; Shan, Baoqing; Wang, Weimin; Zhan, Aibin

    2016-02-01

    River ecosystems are among the most affected habitats globally by human activities, such as the release of chemical pollutants. However, it remains largely unknown how and to what extent many communities such as zooplankton are affected by these environmental stressors in river ecosystems. Here, we aim to determine major factors responsible for shaping community structure of zooplankton in heavily polluted river ecosystems. Specially, we use rotifers in the Haihe River Basin (HRB) in North China as a case study to test the hypothesis that species sorting (i.e. species are “filtered” by environmental factors and occur at environmental suitable sites) plays a key role in determining community structure at the basin level. Based on an analysis of 94 sites across the plain region of HRB, we found evidence that both local and regional factors could affect rotifer community structure. Interestingly, further analyses indicated that local factors played a more important role in determining community structure. Thus, our results support the species sorting hypothesis in highly polluted rivers, suggesting that local environmental constraints, such as environmental pollution caused by human activities, can be stronger than dispersal limitation caused by regional factors to shape local community structure of zooplankton at the basin level.

  13. Indicators: Zooplankton

    EPA Pesticide Factsheets

    Zooplankton are small, free-floating aquatic microorganisms including crustaceans, rotifers, open water insect larvae, and aquatic mites. The zooplankton community is composed of both primary consumers and secondary consumers.

  14. Responses of trophic structure and zooplankton community to salinity and temperature in Tibetan lakes: Implication for the effect of climate warming.

    PubMed

    Lin, Qiuqi; Xu, Lei; Hou, Juzhi; Liu, Zhengwen; Jeppesen, Erik; Han, Bo-Ping

    2017-11-01

    Warming has pronounced effects on lake ecosystems, either directly by increased temperatures or indirectly by a change in salinity. We investigated the current status of zooplankton communities and trophic structure in 45 Tibetan lakes along a 2300 m altitude and a 76 g/l salinity gradient. Freshwater to hyposaline lakes mainly had three trophic levels: phytoplankton, small zooplankton and fish/Gammarus, while mesosaline to hypersaline lakes only had two: phytoplankton and large zooplankton. Zooplankton species richness declined significantly with salinity, but did not relate with temperature. Furthermore, the decline in species richness with salinity in lakes with two trophic levels was much less abrupt than in lakes with three trophic levels. The structural variation of the zooplankton community depended on the length of the food chain, and was significantly explained by salinity as the critical environmental variable. The zooplankton community shifted from dominance of copepods and small cladoceran species in the lakes with low salinity and three trophic levels to large saline filter-feeding phyllopod species in those lakes with high salinity and two trophic levels. The zooplankton to phytoplankton biomass ratio was positively related with temperature in two-trophic-level systems and vice versa in three-trophic-level systems. As the Tibetan Plateau is warming about three times faster than the global average, our results imply that warming could have a considerable impact on the structure and function of Tibetan lake ecosystems, either via indirect effects of salinization/desalinization on species richness, composition and trophic structure or through direct effects of water temperature on trophic interactions. Copyright © 2017 Elsevier Ltd. All rights reserved.

  15. Ocean acidification alters zooplankton communities and increases top-down pressure of a cubozoan predator.

    PubMed

    Hammill, Edd; Johnson, Ellery; Atwood, Trisha B; Harianto, Januar; Hinchliffe, Charles; Calosi, Piero; Byrne, Maria

    2018-01-01

    The composition of local ecological communities is determined by the members of the regional community that are able to survive the abiotic and biotic conditions of a local ecosystem. Anthropogenic activities since the industrial revolution have increased atmospheric CO 2 concentrations, which have in turn decreased ocean pH and altered carbonate ion concentrations: so called ocean acidification (OA). Single-species experiments have shown how OA can dramatically affect zooplankton development, physiology and skeletal mineralization status, potentially reducing their defensive function and altering their predatory and antipredatory behaviors. This means that increased OA may indirectly alter the biotic conditions by modifying trophic interactions. We investigated how OA affects the impact of a cubozoan predator on their zooplankton prey, predominantly Copepoda, Pleocyemata, Dendrobranchiata, and Amphipoda. Experimental conditions were set at either current (pCO 2 370 μatm) or end-of-the-century OA (pCO 2 1,100 μatm) scenarios, crossed in an orthogonal experimental design with the presence/absence of the cubozoan predator Carybdea rastoni. The combined effects of exposure to OA and predation by C. rastoni caused greater shifts in community structure, and greater reductions in the abundance of key taxa than would be predicted from combining the effect of each stressor in isolation. Specifically, we show that in the combined presence of OA and a cubozoan predator, populations of the most abundant member of the zooplankton community (calanoid copepods) were reduced 27% more than it would be predicted based on the effects of these stressors in isolation, suggesting that OA increases the susceptibility of plankton to predation. Our results indicate that the ecological consequences of OA may be greater than predicted from single-species experiments, and highlight the need to understand future marine global change from a community perspective. © 2017 John Wiley & Sons

  16. Zooplankton community response to the winter 2013 deep convection process in the NW Mediterranean Sea

    NASA Astrophysics Data System (ADS)

    Donoso, Katty; Carlotti, François; Pagano, Marc; Hunt, Brian P. V.; Escribano, Rubén.; Berline, Léo.

    2017-03-01

    The Gulf of Lion is an important area of deep convection, where intense winter vertical mixing brings nutrients up from deeper layers, promoting the largest bloom in the Mediterranean at the end of winter/early spring. The DEWEX program conducted cruises in February and April 2013 to investigate the ecosystem level impacts of deep water convection. Zooplankton data were collected through net sampling and imaging with an Underwater Vision Profiler. In winter, low zooplankton abundance and biomass were observed in the Deep Convection Zone (DCZ) and higher values on its periphery. In spring, this pattern reversed with high biomass in the DCZ and lower values on the periphery. On average for the whole area, the potential grazing impact was estimated to increase by one order of magnitude from winter to spring. In April, all areas except the DCZ incurred top-down control by zooplankton on the phytoplankton stock. In the DCZ, the chlorophyll-a values remained high despite the high zooplankton biomass and carbon demand, indicating a sustained bottom-up control. The zooplankton community composition was comparable for both periods, typified by high copepod dominance, but with some differences between the DCZ and peripheral regions. In spring the DCZ was characterized by a strong increase in herbivorous species such as Centropages typicus and Calanus helgolandicus, and an increase in the number of large zooplankton individuals. Our study indicates that the DCZ is likely an area of both enhanced energy transfer to higher trophic levels and organic matter export in the North Western Mediterranean Sea.

  17. Size and species diversity of zooplankton communities in fluctuating Mediterranean salt marshes

    NASA Astrophysics Data System (ADS)

    Brucet, Sandra; Boix, Dani; López-Flores, Rocío; Badosa, Anna; Quintana, Xavier D.

    2006-04-01

    Differences in size and species diversity were analysed in a zooplankton community of a Mediterranean salt marsh (Empordà wetlands, NE Iberian Peninsula), where the dominance of a single species was frequent. In the permanent salt marsh, species diversity and size diversity had similar patterns along zooplankton succession. In the temporary salt marsh species diversity was high after flooding and diminished once water inputs ceased. As species diversity declined size diversity increased. Eventually, one species of calanoid dominated the zooplankton community. The high size diversity in situations of calanoid dominance was possibly due to the co-occurrence of different developmental stages, each of which have different diets. Size diversity would thus indicate trophic niche segregation among different sizes. The combined use of species and size diversity values allows the identification of the successional phases.

  18. Fate of thiamethoxam in mesocosms and response of the zooplankton community.

    PubMed

    Lobson, C; Luong, K; Seburn, D; White, M; Hann, B; Prosser, R S; Wong, C S; Hanson, M L

    2018-05-14

    Thiamethoxam is a neonicotinoid insecticide that can reach wetlands in agro-ecosystems through runoff. The fate and effects of thiamethoxam on non-target organisms in shallow wetland ecosystems have not been well characterized. To this end, a mesocosm study was conducted with a focus on characterizing zooplankton community responses. A single pulse application of thiamethoxam (0, 25, 50, 100, 250, and 500 μg/L; n = 3) was applied to experimental systems and monitored for 8 weeks. The mean half-life of thiamethoxam among the different treatments was 3.7 days in the water column with concentrations of <0.8 μg/L in the majority of mesocosms by 56 days. Principal response curve analysis did not show any significant concentration-dependent differences in the zooplankton community among treatments over the course of the study. The minimum detectable difference (MDD%) values for abundance of potentially sensitive arthropod taxa (nauplius larvae, cyclopoid copepods) allowed the detections from controls as low as 42 and 59% effect, respectively. The MDD% values for total abundance of zooplankton (including the potentially less sensitive taxonomic group of Rotifera) allowed the detection from controls as low as 41% effect. There were no statistically significant differences in zooplankton abundance or diversity between control and treated mesocosms at the end of the study. There were also no statistically significant differences for individual taxa that were sustained between sampling points, or manifested as a concentration-response. We conclude that acute exposure to thiamethoxam at environmentally relevant concentrations (typically ng/L) likely does not represent a significant adverse ecological risk to wetland zooplankton community abundance and structure. Copyright © 2018 Elsevier B.V. All rights reserved.

  19. Planktivory in the changing Lake Huron zooplankton community: Bythotrephes consumption exceeds that of Mysis and fish

    USGS Publications Warehouse

    Bunnell, D.B.; Hunter, R. Douglas; Warner, D.M.; Chriscinske, M.A.; Roseman, E.F.

    2011-01-01

    Oligotrophic lakes are generally dominated by calanoid copepods because of their competitive advantage over cladocerans at low prey densities. Planktivory also can alter zooplankton community structure. We sought to understand the role of planktivory in driving recent changes to the zooplankton community of Lake Huron, a large oligotrophic lake on the border of Canada and the United States. We tested the hypothesis that excessive predation by fish (rainbow smelt Osmerus mordax, bloater Coregonus hoyi) and invertebrates (Mysis relicta, Bythotrephes longimanus) had driven observed declines in cladoceran and cyclopoid copepod biomass between 2002 and 2007. We used a field sampling and bioenergetics modelling approach to generate estimates of daily consumption by planktivores at two 91-m depth sites in northern Lake Huron, U.S.A., for each month, May-October 2007. Daily consumption was compared to daily zooplankton production. Bythotrephes was the dominant planktivore and estimated to have eaten 78% of all zooplankton consumed. Bythotrephes consumption exceeded total zooplankton production between July and October. Mysis consumed 19% of all the zooplankton consumed and exceeded zooplankton production in October. Consumption by fish was relatively unimportant - eating only 3% of all zooplankton consumed. Because Bythotrephes was so important, we explored other consumption estimation methods that predict lower Bythotrephes consumption. Under this scenario, Mysis was the most important planktivore, and Bythotrephes consumption exceeded zooplankton production only in August. Our results provide no support for the hypothesis that excessive fish consumption directly contributed to the decline of cladocerans and cyclopoid copepods in Lake Huron. Rather, they highlight the importance of invertebrate planktivores in structuring zooplankton communities, especially for those foods webs that have both Bythotrephes and Mysis. Together, these species occupy the epi-, meta- and

  20. Zooplankton taxonomic and size diversity in Mediterranean coastal lagoons (NE Iberian Peninsula): Influence of hydrology, nutrient composition, food resource availability and predation

    NASA Astrophysics Data System (ADS)

    Badosa, Anna; Boix, Dani; Brucet, Sandra; López-Flores, Rocío; Gascón, Stéphanie; Quintana, Xavier D.

    2007-01-01

    The influence of hydrology, nutrient composition, food resource availability and predation on zooplankton taxonomic and size diversity was analyzed in several shallow lagoons of a Mediterranean salt marsh (Baix Ter Wetlands, NE Iberian Peninsula). Taxonomic diversity correlated better with variables related to the trophic state, such as nutrient concentrations, whereas size diversity was more sensitive to fish predation. However, the fish predation influence on the size diversity was only significant when fishes reached high densities. Under low fish densities no predation effects were observed and the food resource availability (FR a) appeared to be more important in structuring the zooplankton community. Nevertheless, the two diversity indexes showed opposite responses to this factor. With increasing FR a the taxonomic diversity increased and the size diversity decreased. Neither taxonomic nor size diversity of the zooplankton community correlated with other physical or biotic factors such as hydrological variability or macroinvertebrate predation. The relationships found suggest that the size diversity is mainly related to biotic interactions, such as fish predation or inter/intraspecific competition, while the taxonomic diversity appears to be more sensitive to abiotic factors such as the nutrient composition.

  1. Comparing seasonal dynamics of the Lake Huron zooplankton community between 1983-1984 and 2007 and revisiting the impact of Bythotrephes planktivory

    USGS Publications Warehouse

    Bunnell, David B.; Keeler, Kevin M.; Puchala, Elizabeth A.; Davis, Bruce M.; Pothoven, Steven A.

    2012-01-01

    Zooplankton community composition can be influenced by lake productivity as well as planktivory by fish or invertebrates. Previous analyses based on long-term Lake Huron zooplankton data from August reported a shift in community composition between the 1980s and 2000s: proportional biomass of calanoid copepods increased while that of cyclopoid copepods and herbivorous cladocerans decreased. Herein, we used seasonally collected data from Lake Huron in 1983–1984 and 2007 and reported similar shifts in proportional biomass. We also used a series of generalized additive models to explore differences in seasonal abundance by species and found that all three cyclopoid copepod species (Diacyclops thomasi, Mesocylops edax, Tropocyclops prasinus mexicanus) exhibited higher abundance in 1983–1984 than in 2007. Surprisingly, only one (Epischura lacustris) of seven calanoid species exhibited higher abundance in 2007. The results for cladocerans were also mixed with Bosmina spp. exhibiting higher abundance in 1983–1984, while Daphnia galeata mendotae reached a higher level of abundance in 2007. We used a subset of the 2007 data to estimate not only the vertical distribution of Bythotrephes longimanus and their prey, but also the consumption by Bythotrephes in the top 20 m of water. This epilimnetic layer was dominated by copepod copepodites and nauplii, and consumption either exceeded (Hammond Bay site) or equaled 65% (Detour site) of epilimnetic zooplankton production. The lack of spatial overlap between Bythotrephes and herbivorous cladocerans and cyclopoid copepod prey casts doubt on the hypothesis that Bythotrephes planktivory was the primary driver underlying the community composition changes in the 2000s.

  2. Identifying zooplankton community changes between shallow and upper-mesophotic reefs on the Mesoamerican Barrier Reef, Caribbean.

    PubMed

    Andradi-Brown, Dominic A; Head, Catherine E I; Exton, Dan A; Hunt, Christina L; Hendrix, Alicia; Gress, Erika; Rogers, Alex D

    2017-01-01

    Mesophotic coral ecosystems (MCEs, reefs 30-150 m) are understudied, yet the limited research conducted has been biased towards large sessile taxa, such as scleractinian corals and sponges, or mobile taxa such as fishes. Here we investigate zooplankton communities on shallow reefs and MCEs around Utila on the southern Mesoamerican Barrier Reef using planktonic light traps. Zooplankton samples were sorted into broad taxonomic groups. Our results indicate similar taxonomic zooplankton richness and overall biomass between shallow reefs and MCEs. However, the abundance of larger bodied (>2 mm) zooplanktonic groups, including decapod crab zoea, mysid shrimps and peracarid crustaceans, was higher on MCEs than shallow reefs. Our findings highlight the importance of considering zooplankton when identifying broader reef community shifts across the shallow reef to MCE depth gradient.

  3. Community structure of zooplankton in the main entrance of Bahía Magdalena, México during 1996.

    PubMed

    Gómez-Gutiérrez, J; Palomares-García, R; Hernández-Trujillo, S; Carballido-Carranza, A

    2001-06-01

    The zooplankton community structure, including copepods, euphausiids, chaetognaths, and decapod larvae, was monitored during six circadian cycles using Bongo net (500 microns mesh net) samples from Bahía Magdalena, on the southwest coast of Baja California, México. Samples were obtained during three oceanographic surveys (March, July, and December 1996) to describe the changes in the zooplankton community structure throughout the main mouth of Bahía Magdalena. The zooplankton community structure showed strong changes with a close relation to environmental conditions. During March, a well-mixed water column with low temperature and salinity indicated an influence of the California Current water and local upwelling processes. During July, temperature increased and a wide salinity range was recorded. The stratification of the water column was intense during summer, enhancing the thermocline. The highest temperatures and salinity were recorded in December, related to the presence of the Costa Rica Coastal Current (CRCC). The thermocline deepened as water temperature increased. A typical temperate community structure with low specific richness dominated by Calanus pacificus, Nyctiphanes simplex, and Acartia clausi and high zooplankton biomass (average 9.3 and 5.5 ml 1000 m-3 respectively) during March and July shifted to a more complex tropical community structure with a low zooplankton biomass in December (average 0.37 ml 1000 m-3). The mouth of Bahía Magdalena has a vigorous exchange of water caused by tidal currents. The zooplankton community structure was not significantly different between the central part of Bahía Magdalena and the continental shelf outside the bay for all months. The results suggest a more dynamic inside-outside interaction of zooplankton assemblages than first thought.

  4. Seasonal and interannual changes in zooplankton community in the coastal zone of the North-Eastern Black Sea.

    NASA Astrophysics Data System (ADS)

    Nikishina, A. B.; Arashkevich, E. G.; Louppova, N. E.; Soloviev, K. A.

    2009-04-01

    The phenological response of zooplankton community is a result of simultaneous effect of several factors: feeding conditions, predation abundance, periods of reproduction of common species and hydrodynamic regime. The Black sea ecosystem is one of the best studied in the world, otherwise there is still some illegibility about ecosystem functioning and especially about environmental factors influence on zooplankton dynamics. For the last twenty years pelagic system of the Black Sea has changed dramatically. The invasion of ctenophore Mnemiopsis leidyi in the middle of eighties caused significant decrease in zooplankton biomass. It also altered plankton structure and shifted periods of mass reproduction of the abundant species and biomass maximums. For instance, before the invasion of Mnemiopsis the maximum of zooplankton biomass was observed in autumn (data by A. Pasternak, 1983), and after that the maximum moved to the spring (data by V.S. Khoroshilov, 1999). The incursion of ctenophore Beroe ovata feeding on Mnemiopsis in the nineties has led to the enhancement of zooplankton community. Although the detailed analysis of seasonal zooplankton dynamics wasn't performed in the recent years. The object of our research was to study seasonal and interannual changes in zooplankton community in the coastal area of the North-Eastern Black Sea. Analysis of interannual, seasonal and spatial changes in zooplankton distribution, abundance and species composition along with age structure of dominant populations were performed based on investigations during 2005-2008 years in the North-Eastern Black Sea. Plankton samples were obtained monthly since June 2005 till December 2008. Plankton was collected at three stations at depths 25m, 50m and 500-1000m along the transect from the Blue Bay to the open sea. Sampling of gelatinous animals was conducted in parallel to the zooplankton sampling. Simultaneously with plankton sampling CTD data were obtained. The feeding conditions were

  5. Estimating Diversity of Florida Keys Zooplankton Using New Environmental DNA Methods

    NASA Astrophysics Data System (ADS)

    Djurhuus, A.; Goldsmith, D. B.; Sawaya, N. A.; Breitbart, M.

    2016-02-01

    Zooplankton are of great importance in marine food webs, where they serve to link the phytoplankton and bacteria with higher trophic levels. Zooplankton are a diverse group containing molluscs, crustaceans, fish larvae and many other taxa. The sheer number of species and often minor morphological distinctions between species makes it challenging and exceptionally time consuming to identify the species composition of marine zooplankton samples. As a part of the Marine Biodiversity Observation Network (MBON) project, we have developed and groundtruthed an alternative, relatively time-efficient method for zooplankton identification using environmental DNA (eDNA). Samples were collected from Molasses reef, Looe Key, and Western Sambo along the Florida Keys from five bi-monthly cruises on board the RV Walton Smith. Samples were collected for environmental DNA (eDNA) by filtering 1 L of water on to a 0.22 µm filter and zooplankton samples were collected using nets with three mesh sizes (64μm, 200μm, and 500μm) to catch different size fractions. Half of zooplankton samples were fixed in 70% ethanol and half in 10% formalin, for DNA extraction and morphological identification, respectively. Individuals representing visually abundant taxa were picked into individual wells for PCR with universal 18S rRNA gene primers and subsequent sequencing to build a reference barcode database for zooplankton species commonly found in the study region. PCR and Illumina MiSeq next generation sequencing was applied to the eDNA extracted from the 0.22 μm filters and sequences were be compared to our local custom database as well as publicly available databases to determine zooplankton community composition. Finally, composition and diversity analyses were performed to compare results obtained with the new eDNA approach to standard morphological classification of zooplankton communities. Results show that the eDNA approach can enable the determination of zooplankton diversity through

  6. An evaluation of the zooplankton community at the Sheboygan River Area of Concern and non-Area of Concern comparison sites in western Lake Michigan rivers and harbors in 2016

    USGS Publications Warehouse

    Olds, Hayley T.; Scudder Eikenberry, Barbara C.; Burns, Daniel J.; Bell, Amanda H.

    2017-12-22

    The Great Lakes Areas of Concern (AOCs) are considered to be the most severely degraded areas within the Great Lakes basin, as defined in the Great Lakes Water Quality Agreement and amendments. Among the 43 designated AOCs are four Lake Michigan AOCs in the State of Wisconsin. The smallest of these AOCs is the Sheboygan River AOC, which was designated as an AOC because of sediment contamination from polychlorinated biphenyl compounds (PCBs), polycyclic aromatic hydrocarbons (PAHs), volatile organic compounds (VOCs), and heavy metals. The Sheboygan River AOC has 9 of 14 possible Beneficial Use Impairments (BUIs), which must be addressed to improve overall water-quality, and to ultimately delist the AOC. One of the BUIs associated with this AOC is the “degradation of phytoplankton and zooplankton populations,” which can be removed from the list of impairments when it has been determined that zooplankton community composition and structure at the AOC do not differ significantly from communities at non-AOC comparison sites. In 2012 and 2014, the U.S. Geological Survey collected plankton (phytoplankton and zooplankton) community samples at the Sheboygan River AOC and selected non-AOC sites as part of a larger Great Lakes Restoration Initiative study evaluating both the benthos and plankton communities in all four of Wisconsin’s Lake Michigan AOCs. Although neither richness nor diversity of phytoplankton or zooplankton in the Sheboygan River AOC were found to differ significantly from the non-AOC sites in 2012, results from the 2014 data indicated that zooplankton diversity was significantly lower, and so rated as degraded, when compared to the Manitowoc and Kewaunee Rivers, two non-AOC sites of similar size, land use, and close geographic proximity.As a follow-up to the 2014 results, zooplankton samples were collected at the same locations in the AOC and non-AOC sites during three sampling trips in spring, summer, and fall 2016. An analysis of similarity indicated

  7. Evaluation of the Zooplankton Community of Livingston Reservoir, Texas, as Related to Paddlefish Food Resources

    DTIC Science & Technology

    1993-12-01

    EVALUATION OF THE ZOOPLANKTON COMMUNITY OF LIVINGSTON RESERVOIR. TEXAS, AS RELATED TO PADDLEFISH FOOD RESOURCES A Thesis by CASEY KENNETH MOORE...OF LIVINGSTON RESERVOIR, TEXAS. AS RELATED TO PADDLEFISH FOOD RESOURCES A Thesis by CASEY KENNETH MOORE Submitted to Texas A&M University in partial...Fisheries Sciences iii ABSTRACT Evaluation of the Zooplankton Community of Livingston Reservoir, Texas, as Related to Paddlefish Food Resources

  8. Investigating long-term interactions between phytoplankton and zooplankton in the NE Atlantic and North Sea

    NASA Astrophysics Data System (ADS)

    Khouri, R.; Beaulieu, C.; Henson, S.; Martin, A. P.; Edwards, M.

    2016-02-01

    It is believed that changes in phytoplankton community have happened in the North Sea and NE Atlantic in the past decades. Since phytoplankton are the base of the marine food web, it is essential to understand the causes of such behaviour due its potential to induce change in the wider ecosystem. Whilst the impact of environmental controls, such as climate, have received considerable attention, phytoplankton can also be affected by zooplankton grazing. We investigate how changes in zooplankton impact phytoplankton populations and community composition, and vice-versa. We use data from the Continuous Plankton Recorder survey, an unique dataset that uses the same sampling methodology since 1958 and thus provides long and comparable plankton time-series. We apply statistical modelling to describe the interaction between phytoplankton and zooplankton. The analysis is inspired from techniques available in econometrics literature, which do not require assumptions of normality, independence or stationarity of the time-series. In particular, we discuss wether climatic factors or zooplankton grazing are more relevant to the variability in phytoplankton abundance and community composition.

  9. [Effects of large bio-manipulation fish pen on community structure of crustacean zooplankton in Meiliang Bay of Taihu Lake].

    PubMed

    Ke, Zhi-Xin; Xie, Ping; Guo, Long-Gen; Xu, Jun; Zhou, Qiong

    2012-08-01

    In 2005, a large bio-manipulation pen with the stock of silver carp and bighead carp was built to control the cyanobacterial bloom in Meiliang Bay of Taihu Lake. This paper investigated the seasonal variation of the community structure of crustacean zooplankton and the water quality within and outside the pen. There were no significant differences in the environmental parameters and phytoplankton biomass within and outside the pen. The species composition and seasonal dynamics of crustacean zooplankton within and outside the pen were similar, but the biomass of crustacean zooplankton was greatly suppressed by silver carp and bighead carp. The total crustacean zooplankton biomass and cladocerans biomass were significantly lower in the pen (P < 0.05). In general, silver carp and bighead carp exerted more pressure on cladoceran species than on copepod species. A distinct seasonal succession of crustacean zooplankton was observed in the Bay. Many crustacean species were only dominated in given seasons. Large-sized crustacean (mainly Daphnia sp. and Cyclops vicnus) dominated in winter and spring, while small-sized species (mainly Bosmina sp., Ceriodaphnia cornuta, and Limnoithona sinensis) dominated in summer and autumn. Canonical correspondence analysis showed that water transparency, temperature, and phytoplankton biomass were the most important factors affecting the seasonal succession of the crustacean.

  10. Climate-mediated changes in zooplankton community structure for the eastern Bering Sea

    NASA Astrophysics Data System (ADS)

    Eisner, Lisa B.; Napp, Jeffrey M.; Mier, Kathryn L.; Pinchuk, Alexei I.; Andrews, Alexander G.

    2014-11-01

    Zooplankton are critical to energy transfer between higher and lower trophic levels in the eastern Bering Sea ecosystem. Previous studies from the southeastern Bering Sea shelf documented substantial differences in zooplankton taxa in the Middle and Inner Shelf Domains between warm and cold years. Our investigation expands this analysis into the northern Bering Sea and the south Outer Domain, looking at zooplankton community structure during a period of climate-mediated, large-scale change. Elevated air temperatures in the early 2000s resulted in regional warming and low sea-ice extent in the southern shelf whereas the late 2000s were characterized by cold winters, extensive spring sea ice, and a well-developed pool of cold water over the entire Middle Domain. The abundance of large zooplankton taxa such as Calanus spp. (C. marshallae and C. glacialis), and Parasagitta elegans, increased from warm to cold periods, while the abundance of gelatinous zooplankton (Cnidaria) and small taxa decreased. Biomass followed the same trends as abundance, except that the biomass of small taxa in the southeastern Bering Sea remained constant due to changes in abundance of small copepod taxa (increases in Acartia spp. and Pseudocalanus spp. and decreases in Oithona spp.). Statistically significant changes in zooplankton community structure and individual species were greatest in the Middle Domain, but were evident in all shelf domains, and in both the northern and southern portions of the eastern shelf. Changes in community structure did not occur abruptly during the transition from warm to cold, but seemed to begin gradually and build as the influence of the sea ice and cold water temperatures persisted. The change occurred one year earlier in the northern than the southern Middle Shelf. These and previous observations demonstrate that lower trophic levels within the eastern Bering Sea respond to climate-mediated changes on a variety of time scales, including those shorter than

  11. Metabarcoding Baseline for the Sargasso Sea Zooplankton Community

    NASA Astrophysics Data System (ADS)

    Blanco-Bercial, L.; Alam, S.

    2016-02-01

    Understanding the responses and evolution of any community over space and time requires a deep knowledge of the species present at each location and their interactions. Where taxonomy turns out to be challenging, as it is in the case of zooplankton, supra-species grouping is a common resort in community characterization. Although this makes morphological identification manageable, there is the associated price of a limited depth of study and the risk of mixing different species' organismal responses. As global change begins to influence species distributions and physiologies, it becomes ever more important to discriminate at a species specific level. The development of DNA-based identification protocols during the last decades are rapidly driving these limitations away, increasing our understanding of the existing complexity of even very close taxa to different stressors or environmental conditions. Beyond the mere taxonomic discrimination of the analyzed community, the use of DNA sequences allows for the rapid integration of phylogenetic measurements and related indexes. In this presentation, we show our first results tackling one of the regions with the highest zooplankton diversity, the Subtropical North Atlantic at the Bermuda Atlantic Time-Series Study (BATS) site. The chosen metabarcoding region was the hypervariable V9 region of the 18S rRNA gene. In this first investigation, we establish the baseline information needed for further and more comprehensive analyses on the time series: minimum coverage depth per sample, taxonomic and phylogenetic diversity of the community and effect of the Diel Vertical Migration in the epipelagic community. We also analyze the limitations of the species identification in relation to the variability of the V9 region within and between species.

  12. Spatial variations in zooplankton community structure along the Japanese coastline in the Japan Sea: influence of the coastal current

    NASA Astrophysics Data System (ADS)

    Kodama, Taketoshi; Wagawa, Taku; Iguchi, Naoki; Takada, Yoshitake; Takahashi, Takashi; Fukudome, Ken-Ichi; Morimoto, Haruyuki; Goto, Tsuneo

    2018-06-01

    This study evaluates spatial variations in zooplankton community structure and potential controlling factors along the Japanese coast under the influence of the coastal branch of the Tsushima Warm Current (CBTWC). Variations in the density of morphologically identified zooplankton in the surface layer in May were investigated for a 15-year period. The density of zooplankton (individuals per cubic meter) varied between sampling stations, but there was no consistent west-east trend. Instead, there were different zooplankton community structures in the west and east, with that in Toyama Bay particularly distinct: Corycaeus affinis and Calanus sinicus were dominant in the west and Oithona atlantica was dominant in Toyama Bay. Distance-based redundancy analysis (db-RDA) was used to characterize the variation in zooplankton community structure, and four axes (RD1-4) provided significant explanation. RD2-4 only explained < 4.8 % of variation in the zooplankton community and did not show significant spatial difference; however, RD1, which explained 89.9 % of variation, did vary spatially. Positive and negative species scores on RD1 represent warm- and cold-water species, respectively, and their variation was mainly explained by water column mean temperature, and it is considered to vary spatially with the CBTWC. The CBTWC intrusion to the cold Toyama Bay is weak and occasional due to the submarine canyon structure of the bay. Therefore, the varying bathymetric characteristics along the Japanese coast of the Japan Sea generate the spatial variation in zooplankton community structure, and dominance of warm-water species can be considered an indicator of the CBTWC.

  13. Some ecological implications of a neem (azadirachtin) insecticide disturbance to zooplankton communities in forest pond enclosures.

    PubMed

    Kreutzweiser, David P; Sutton, Trent M; Back, Richard C; Pangle, Kevin L; Thompson, Dean G

    2004-04-28

    A neem-based insecticide, Neemix 4.5, was applied to forest pond enclosures at concentrations of 10, 17, and 28 microg l(-1) azadirachtin (the active ingredient). At these test concentrations, significant, concentration-dependent reductions in numbers of adult copepods were observed, but immature copepod and cladoceran populations were unaffected. There was no evidence of recovery of adult copepods within the sampling season (May to October). The ecological significance of this disturbance to the zooplankton community was examined by determining biomass as a measure of food availability for higher predators, plankton community respiration, dissolved oxygen (DO) concentrations, and conductivity as functional indicators of ecosystem stress, and zooplankton food web stability as a measure of effects on trophic structure. The selective removal or reduction of adult copepods was sufficient to measurably reduce total zooplankton biomass for several weeks mid-season. During the period of maximal impact (about 4-9 weeks after the applications), total plankton community respiration was significantly reduced, and this appeared to contribute to significant, concentration-dependent increases in dissolved oxygen and decreases in conductivity among treated enclosures. The reductions in adult copepods resulted in negative effects on zooplankton food web stability through eliminations of a trophic link and reduced interactions and connectance. Comparing the results here to those from a previous study with tebufenozide, which was selectively toxic to cladocerans and had little effect on food web stability, indicates that differential sensitivity among taxa can influence the ecological significance of pesticide effects on zooplankton communities.

  14. First results on zooplankton community composition and contamination by some persistent organic pollutants in the Gulf of Tadjoura (Djibouti).

    PubMed

    Boldrocchi, G; Moussa Omar, Y; Rowat, D; Bettinetti, R

    2018-06-15

    The Gulf of Tadjoura is located in the Horn of Africa and is widely recognized as an important site where the zooplanktivorous whale sharks seasonally aggregate from October to February. The surface zooplankton community (0-3m) was weekly sampled from November 2016 to February 2017 in two sites during the whale shark aggregation period. A total of 12 phyla were identified. Copepoda represented the most abundant and diverse group with 29 different genera, and contributed with an average of 82% of the mean zooplankton density of approximately 6600indm -3 . During the sampling period, copepods were dominated numerically by Calanoida (3600indm -3 ), followed by Poicilostomatatoida (1300indm -3 ). Within the copepods, Paracalanidae, Calanidae, Oncaeidae and Miraciidae were the most common families. The temporal trend in zooplankton biomass at both stations revealed the highest peak in December (41.3±36.4mgm -3 ), and the lowest in February (6.6±3.3mgm -3 ). As no information is available on the occurrence of legacy contaminants use and release in this area, analysis revealed the consistent presence of both DDT and PCB residues in zooplankton samples in the Gulf of Tadjoura. Total PCB ranged from approximately 110 to 637ngg -1 d.w., while total DDT from 21 to 80ngg -1 d.w. The proportion of primary DDT in the total residue was higher than DDE and DDD, which strongly suggests that the area might actually be subjected to DDT inputs of the parent compound. Copyright © 2018 Elsevier B.V. All rights reserved.

  15. Different mixing techniques in experimental mesocosms—does mixing affect plankton biomass and community composition?

    PubMed Central

    Striebel, Maren; Kirchmaier, Leo; Hingsamer, Peter

    2014-01-01

    Over the past four decades, mesocosm studies have been successfully used for a wide range of applications and have provided a lot of information on trophic interactions and biogeochemical cycling of aquatic ecosystem. However, the setup of such mesocosms (e.g., dimensions and duration of experiments) needs to be adapted to the relevant biological processes being investigated. Mixing of the water column is an important factor to be considered in mesocosm experiments because enclosing water in an artificial chamber always alters the mixing regime. Various approaches have been applied to generate mixing in experimental ecosystems, including pure mechanical mixing (e.g., using a disc), airlifts, bubbling with compressed air, and pumping. In this study, we tested different mixing techniques for outdoor mesocosms and their impact on plankton biomass and community composition. We compared mesocosms mixed with a disc, an airlift-system, and bubbling, and used a nonactively mixed mesocosm as a control. We investigated phytoplankton, ciliate, and zooplankton communities during a 19-d mesocosm experiment. Based on our results, we concluded that mechanical mixing with a disc was the most effective technique due to the undertow produced by lowering and lifting the disc. While no mixing technique affected seston biomass, zooplankton biomass was highest in the treatments mixed with the disc. The airlift treatments had the lowest relative share of small flagellates. However, no further differences in phytoplankton community composition occurred and no differences in zooplankton community composition existed between all actively mixed treatments. PMID:25729335

  16. Biotic and abiotic factors influencing zooplankton vertical distribution in Lake Huron

    USGS Publications Warehouse

    Nowicki, Carly J.; Bunnell, David B.; Armenio, Patricia M.; Warner, David M.; Vanderploeg, Henry A.; Cavaletto, Joann F.; Mayer, Christine M.; Adams, Jean V.

    2017-01-01

    The vertical distribution of zooplankton can have substantial influence on trophic structure in freshwater systems, particularly by determining spatial overlap for predator/prey dynamics and influencing energy transfer. The zooplankton community in some of the Laurentian Great Lakes has undergone changes in composition and declines in total biomass, especially after 2003. Mechanisms underlying these zooplankton changes remain poorly understood, in part, because few studies have described their vertical distributions during daytime and nighttime conditions or evaluated the extent to which predation, resources, or environmental conditions could explain their distribution patterns. Within multiple 24-h periods during July through October 2012 in Lake Huron, we conducted daytime and nighttime sampling of zooplankton, and measured food (chlorophyll-a), temperature, light (Secchi disk depth), and planktivory (biomass of Bythotrephes longimanus and Mysis diluviana). We used linear mixed models to determine whether the densities for 22 zooplankton taxa varied between day and night in the epi-, meta-, and hypolimnion. For eight taxa, higher epilimnetic densities were observed at night than during the day; general linear models revealed these patterns were best explained by Mysis diluviana (four taxa), Secchi disk depth (three taxa), epilimnetic water temperature (three taxa), chlorophyll (one taxon), and biomass of Bythotrephes longimanus (one taxon). By investigating the potential effects of both biotic and abiotic variables on the vertical distribution of crustacean zooplankton and rotifers, we provide descriptions of the Lake Huron zooplankton community and discuss how future changes in food web dynamics or climate change may alter zooplankton distribution in freshwater environments.

  17. High frequency mesozooplankton monitoring: Can imaging systems and automated sample analysis help us describe and interpret changes in zooplankton community composition and size structure — An example from a coastal site

    NASA Astrophysics Data System (ADS)

    Romagnan, Jean Baptiste; Aldamman, Lama; Gasparini, Stéphane; Nival, Paul; Aubert, Anaïs; Jamet, Jean Louis; Stemmann, Lars

    2016-10-01

    The present work aims to show that high throughput imaging systems can be useful to estimate mesozooplankton community size and taxonomic descriptors that can be the base for consistent large scale monitoring of plankton communities. Such monitoring is required by the European Marine Strategy Framework Directive (MSFD) in order to ensure the Good Environmental Status (GES) of European coastal and offshore marine ecosystems. Time and cost-effective, automatic, techniques are of high interest in this context. An imaging-based protocol has been applied to a high frequency time series (every second day between April 2003 to April 2004 on average) of zooplankton obtained in a coastal site of the NW Mediterranean Sea, Villefranche Bay. One hundred eighty four mesozooplankton net collected samples were analysed with a Zooscan and an associated semi-automatic classification technique. The constitution of a learning set designed to maximize copepod identification with more than 10,000 objects enabled the automatic sorting of copepods with an accuracy of 91% (true positives) and a contamination of 14% (false positives). Twenty seven samples were then chosen from the total copepod time series for detailed visual sorting of copepods after automatic identification. This method enabled the description of the dynamics of two well-known copepod species, Centropages typicus and Temora stylifera, and 7 other taxonomically broader copepod groups, in terms of size, biovolume and abundance-size distributions (size spectra). Also, total copepod size spectra underwent significant changes during the sampling period. These changes could be partially related to changes in the copepod assemblage taxonomic composition and size distributions. This study shows that the use of high throughput imaging systems is of great interest to extract relevant coarse (i.e. total abundance, size structure) and detailed (i.e. selected species dynamics) descriptors of zooplankton dynamics. Innovative

  18. Zooplankton community resilience and aquatic environmental stability on aquaculture practices: a study using net cages.

    PubMed

    Dias, J D; Simões, N R; Bonecker, C C

    2012-02-01

    Fish farming in net cages causes changes in environmental conditions. We evaluated the resilience of zooplankton concerning this activity in Rosana Reservoir (Paranapanema River, PR-SP). Samples were taken near the net cages installed at distances upstream and downstream, before and after net cage installation. The resilience was estimated by the decrease in the groups' abundance after installing the net cages. The zooplankton community was represented by 106 species. The most abundant species were Synchaeta pectinata, S. oblonga, Conochilus coenobasis, Polyarthra dolichoptera and C. unicornis (Rotifera), Ceriodaphnia cornuta, Moina minuta, Bosmina hagmanni and C. silvestrii (Cladocera) and Notodiaptomus amazonicus (Copepoda). The resilience of microcrustaceans was affected in the growing points as this activity left the production environment for longer, delaying the natural ability of community responses. Microcrustaceans groups, mainly calanoid and cyclopoid copepods, had a different return rate. The net cage installation acted as a stress factor on the zooplankton community. Management strategies that cause fewer risks to the organisms and maximize energy flow may help in maintaining system stability.

  19. Feeding ecology of pelagic fish species in the Gulf of Riga (Baltic Sea): the importance of changes in the zooplankton community.

    PubMed

    Lankov, A; Ojaveer, H; Simm, M; Põllupüü, M; Möllmann, C

    2010-12-01

    The feeding ecology of four pelagic fish species was studied in relation to their prey availability in the Gulf of Riga (Baltic Sea) during the summer 1999-2006. The zooplankton community was dominated by the cladoceran Bosmina longispina, rotifers Keratella cochlearis and K. quadrata and the copepod Eurytemora affinis, with the highest interannual variability in abundance recorded for B. longispina. The last influenced the diet of adult sprat Sprattus sprattus, juvenile smelt Osmerus eperlanus and three-spined stickleback Gasterosteus aculeatus as these were strongly selecting for B. longispina. The fish feeding activity did not match the abundance dynamics of their preferred prey, suggesting that fishes may switch to consume other prey in case the preferred diet was limited. A considerable dietary overlap indicated high potential competition between pelagic fish species. While herring Clupea harengus membras and G. aculeatus were relying on very different food, the diets of young O. eperlanus and G. aculeatus were very similar. Interannual variability in zooplankton composition and abundance significantly affected the diet composition of fishes, but those changes were insufficient to exert a consistent influence upon fish feeding activity and total amounts of zooplankton consumed. © 2010 The Authors. Journal of Fish Biology © 2010 The Fisheries Society of the British Isles.

  20. Zooplankton responses to increasing sea surface temperatures in the southeastern Australia global marine hotspot

    NASA Astrophysics Data System (ADS)

    Kelly, Paige; Clementson, Lesley; Davies, Claire; Corney, Stuart; Swadling, Kerrie

    2016-10-01

    Southeastern Australia is a 'hotspot' for oceanographic change. Here, rapidly increasing sea surface temperatures, rising at more than double the global trend, are largely associated with a southerly extension of the East Australian Current (EAC) and its eddy field. Maria Island, situated at the southern end of the EAC extension at 42°S, 148°E, has been used as a site to study temperature-driven biological trends in this region of accelerated change. Zooplankton have short life cycles (usually < 1 year) and are highly sensitive to environmental change, making them an ideal indicator of the biological effects of an increased southward flow of the EAC. Data from in-situ net drops and the Continuous Plankton Recorder (CPR), collected since 2009, together with historical zooplankton abundance data, have been analysed in this study. Like the North Atlantic, zooplankton communities of southeastern Australia are responding to increased temperatures through relocation, long-term increases in warm-water species and a shift towards a zooplankton community dominated by small copepods. The biological trends present evidence of extended EAC influence at Maria Island into autumn and winter months, which has allowed for the rapid establishment of warm-water species during these seasons, and has increased the similarity between Maria Island and the more northerly Port Hacking zooplankton community. Generalised Linear Models (GLM) suggest the high salinity and low nutrient properties of EAC-water to be the primary drivers of increasing abundances of warm-water species off southeastern Australia. Changes in both the species composition and size distribution of the Maria Island zooplankton community will have effects for pelagic fisheries. This study provides an indication of how zooplankton communities influenced by intensifying Western Boundary currents may respond to rapid environmental change.

  1. The synergetic effects of turbulence and turbidity on the zooplankton community structure in large, shallow Lake Taihu.

    PubMed

    Zhou, Jian; Qin, Boqiang; Han, Xiaoxia

    2018-01-01

    Climate change is predicted to influence the heat budget of aquatic ecosystems and, in turn, affect the stability of the water column leading to increased turbulence coupled with enhanced turbidity. However, the synergetic effects of turbulence and turbidity on zooplankton community structure remain to be understood in large, shallow lakes. To determine the possible synergetic effects of these factors on zooplankton communities, a 15-day mesocosm experiment was carried out and tested under four turbulence and turbidity regimes namely control (ɛ = 0, 7.6 ± 4.2 NTU), low (ɛ = 6.01 × 10 -8  m 2  s -3 , 19.4 ± 8.6 NTU), medium (ɛ = 2.95 × 10 -5  m 2  s -3 , 55.2 ± 14.4 NTU), and high (ɛ = 2.39 × 10 -4  m 2  s -3 , 741.6 ± 105.2 NTU) conditions, which were comparable to the natural conditions in Lake Taihu. Results clearly showed the negative effects of turbulence and turbidity on zooplankton survival, which also differed among taxa. Specifically, increased turbulence and turbidity levels influenced the competition among zooplankton species, which resulted to the shift from being large body crustacean-dominated (copepods and cladocerans) to rotifer-dominated community after 3 days. The shift could be associated with the decrease in vulnerability of crustaceans in such environments. Our findings suggested that changes in the level of both turbidity and turbulence in natural aquatic systems would have significant repercussions on the zooplankton communities, which could contribute to the better understanding of community and food web dynamics in lake ecosystems exposed to natural mixing/disturbances.

  2. Abundance, composition, and distribution of crustacean zooplankton in relation to hypolimnetic oxygen depletion in west-central Lake Erie

    USGS Publications Warehouse

    Heberger, Roy F.; Reynolds, James B.

    1977-01-01

    Samples of crustacean zooplankton were collected monthly in west-central Lake Erie in April and June to October 1968, and in July and August 1970, before and during periods of hypolimnetic dissolved oxygen (DO) depletion. The water column at offshore stations was thermally stratified from June through September 1968, and the hypolimnion contained no DO in mid-August of 1968 or 1970. Composition, abundance, and vertical distribution of crustacean zooplankton changed coincidentally with oxygen depletion. From July to early August, zooplankton abundance dropped 79% in 1968 and 50% in 1970. The declines were attributed largely to a sharp decrease in abundance of planktonic Cyclops bicuspidatus thomasi. Zooplankton composition shifted from mainly cyclopoid copepods in July to mainly cladocerans and copepod nauplii in middle to late August. We believe that mortality of adults and dormancy of copepodites in response to anoxia was the probable reason for the late summer decline in planktonic C. b. thomasi.

  3. Species Composition and Distribution of Zooplankton from Northeastern Sakhalin Shelf (Sea of Okhotsk)

    NASA Astrophysics Data System (ADS)

    Kasyan, V. V.

    2018-03-01

    The species composition, density, biomass, and distribution of zooplankton of the northeastern Sakhalin shelf, Sea of Okhotsk (Chaivo, Pil'tunskii, and Morskoi regions) were studied in October 2014. Zooplankton was represented by 15 taxonomic groups, which were dominated by Copepoda (13 species). The average density and biomass was highest in the Chaivo region (14112 ± 4322 ind./m3, 395 ± 107 mg/m3) and in the Pil'tunskii region (16692 ± 10707 ind./m3, 346 ± 233 mg/m3); the abundance of detected taxonomic groups was minimal (8-12). The average density and biomass of zooplankton was up to 4304 ± 2441 ind./m3, 133 ± 77 mg/m3 in the Morskoi region and increased with depth; the abundance of taxa was maximum (15). Four species of copepods made up the majority of the density and biomass of zooplankton: Acartia hudsonica, Eurytemora herdmani, Pseudocalanus newmani, and Oithona similis. In the Chaivo region, species of the genera Acartia, Eurytemora, and Oithona dominated and subdominated; in Pil'tunskii region, species of the genera Acartia and Oithona dominated and subdominated; and in the Morskoi region, species of the genera Oithona, Pseudocalanus, and Acartia dominated and subdominated.

  4. Distinct zooplankton regime shift patterns across ecoregions of the U.S. Northeast continental shelf Large Marine Ecosystem

    NASA Astrophysics Data System (ADS)

    Morse, R. E.; Friedland, K. D.; Tommasi, D.; Stock, C.; Nye, J.

    2017-01-01

    We investigated regime shifts in seasonal zooplankton communities of the Northeast continental shelf Large Marine Ecosystem (NES) and its subcomponent ecoregions over a multi-decadal period (1977-2013). Our cross ecoregion analysis shows that regime shifts in different ecoregions often exhibited very distinct characteristics, emphasizing more granular fluctuations in NES plankton communities relative to previous work. Shifts early in the time series generally reflected an increase in abundance levels. The response of zooplankton abundance within fall communities was more similar among ecoregions than for spring communities. The Gulf of Maine exhibited highly distinct patterns from other ecoregions, with regime shifts identified in the early 1980s, early 2000s, and mid-2000s for spring communities. Regime shifts were identified in the early to mid-1990s for the NES, Georges Bank, and the Mid-Atlantic Bight ecoregions, while the fall communities experienced shifts in the early 1990s and late 1980s for the NES and Georges Bank, but in the late 1990s in the Mid-Atlantic Bight. A constrained correspondence analysis of zooplankton community against local and basin-scale climatological indices suggests that water temperature, stratification, and the Atlantic multidecadal oscillation (AMO) were the predominant factors in driving the zooplankton community composition.

  5. Bottom-up linkages between primary production, zooplankton, and fish in a shallow, hypereutrophic lake.

    PubMed

    Matsuzaki, Shin-Ichiro S; Suzuki, Kenta; Kadoya, Taku; Nakagawa, Megumi; Takamura, Noriko

    2018-06-09

    Nutrient supply is a key bottom-up control of phytoplankton primary production in lake ecosystems. Top-down control via grazing pressure by zooplankton also constrains primary production, and primary production may simultaneously affect zooplankton. Few studies have addressed these bidirectional interactions. We used convergent cross-mapping (CCM), a numerical test of causal associations, to quantify the presence and direction of the causal relationships among environmental variables (light availability, surface water temperature, NO 3 -N, and PO 4 -P), phytoplankton community composition, primary production, and the abundances of five functional zooplankton groups (large-cladocerans, small-cladocerans, rotifers, calanoids, and cyclopoids) in Lake Kasumigaura, a shallow, hypereutrophic lake in Japan. CCM suggested that primary production was causally influenced by NO 3 -N and phytoplankton community composition; there was no detectable evidence of a causal effect of zooplankton on primary production. Our results also suggest that rotifers and cyclopoids were forced by primary production, and cyclopoids were further influenced by rotifers. However, our CCM suggested that primary production was weakly influenced by rotifers (i.e., bidirectional interaction). These findings may suggest complex linkages between nutrients, primary production, and rotifers and cyclopoids, a pattern that has not been previously detected or has been neglected. We used linear regression analysis to examine the relationships between the zooplankton community and pond smelt (Hypomesus nipponensis), the most abundant planktivore and the most important commercial fish species in Lake Kasumigaura. The relative abundance of pond smelt was significantly and positively correlated with the abundances of rotifers and cyclopoids, which were causally influenced by primary production. This finding suggests that bottom-up linkages between nutrient, primary production, and zooplankton abundance might be a

  6. Effects of a new molt-inducing insecticide, tebufenozide, on zooplankton communities in lake enclosures.

    PubMed

    Kreutzweiser, D P; Thomas, D R

    1995-10-01

    : A potent ecdysone agonist, tebufenozide, has recently been developed as a molt-inducing insecticide to control defoliating lepidopterans. As part of continuing research efforts to assess the effectiveness and environmental safety of this material for insect pest management in Canadian forests, tebufenozide (RH-5992-2F) was applied to large lake enclosures and the effects on zooplankton communities were evaluated. There were significant treatment effects at all test concentrations (0.07-0.66 mg L(-1) tebufenozide). Concentration-dependent reductions in the abundance of cladocerans indicated that there were direct toxic effects of tebufenozide on this group of macrozooplankton. There were no indications of direct toxic effects on copepods. Significant increases in abundance of rotifers in treated enclosures at the three higher test concentrations were coincident with reductions in cladocerans and indicated secondary effects of the insecticide on the abundance of microzooplankton. There were no significant differences among treated and control enclosures in chlorophyll a concentrations, indicating that tebufenozide did not have direct effects on phytoplankton biomass, nor did the alterations in the zooplankton communities of treated enclosures have measurable secondary effects on phytoplankton biomass. Daytime dissolved oxygen concentrations were significantly higher in treated enclosures than in controls, indicating that the perturbation to biotic communities of some treated enclosures was sufficient to induce measurable changes in system-level functional attributes. Recovery of zooplankton communities in the enclosures occurred within 1-2 months at 0.07 and 0.13 mg l(-1) and by the following summer (12-13 months) at 0.33 and 0.66 mg l(-1).

  7. Zooplankton responses to sandbar opening in a tropical eutrophic coastal lagoon

    NASA Astrophysics Data System (ADS)

    Santangelo, Jayme M.; de M. Rocha, Adriana; Bozelli, Reinaldo L.; Carneiro, Luciana S.; de A. Esteves, Francisco

    2007-02-01

    The effects of a disturbance by sandbar opening on the zooplankton community were evaluated through a long-term study in an eutrophic and oligohaline system, Imboassica Lagoon, Rio de Janeiro, Brazil. Zooplankton samples and limnological data were collected monthly from March 2000 to February 2003. Before the sandbar was opened in February 2001, the lagoon showed eutrophic conditions, with high mean nutrient concentrations and low salinity (total nitrogen - TN = 190.28 μM, chlorophyll a content - Chl. a = 104.60 μg/L and salinity = 0.87'). During this period, the zooplankton species present, such as the rotifers Brachionus calyciflorus and Brachionus havanaensis, were typical of freshwater to oligohaline and eutrophic environments. After the sandbar opening, the lagoon changed to a lower trophic status and increased salinity (TN = 55.11 μM, Chl. a = 27.56 μg/L and salinity = 19.64'). As a result, the zooplankton community came to consist largely of the rotifer Brachionus plicatilis, marine copepods and meroplanktonic larvae, mainly Gastropoda. Salinity was the main force structuring the zooplankton community after the sandbar opening. Two years after this episode, the prior zooplankton community had not reestablished itself, indicating a low resilience to this disturbance. The conditions developed prior to a sandbar opening can be crucial to the community responses in the face of this disturbance and for the capacity of the original zooplankton community to re-establish itself.

  8. Zooplankton community structure during a transition from dry to wet state in a shallow, subtropical estuarine lake

    NASA Astrophysics Data System (ADS)

    Carrasco, Nicola K.; Perissinotto, Renzo

    2015-12-01

    Lake St Lucia is among the most important shallow ecosystems globally and Africa's largest estuarine lake. It has long been regarded as a resilient system, oscillating through periods of hypersalinity and freshwater conditions, depending on the prevailing climate. The alteration of the system's catchment involving the diversion of the Mfolozi River away from Lake St Lucia, however, challenged the resilience of the system, particularly during the most recent drought (2002-2011), sacrificing much of its biodiversity. This study reports on the transition of the St Lucia zooplankton community from a dry hypersaline state to a new wet phase. Sampling was undertaken during routine quarterly surveys at five representative stations along the lake system from February 2011 to November 2013. A total of 54 taxa were recorded during the study period. The zooplankton community was numerically dominated by the calanoid copepods Acartiella natalensis and Pseudodiaptomus stuhlmanni and the cyclopoid copepod Oithona brevicornis. While the mysid Mesopodopsis africana was still present in the system during the wet phase, it was not found in the swarming densities that were recorded during the previous dry phase, possibly due to increased predation pressure, competition with other taxa and or the reconnection with the Mfolozi River via a beach spillway. The increase in zooplankton species richness recorded during the present study shows that the system has undergone a transition to wet state, with the zooplankton community structure reflecting that recorded during the past. It is likely, though, that only a full restoration of natural mouth functioning will result in further diversity increases.

  9. Zooplankton trophic niches respond to different water types of the western Tasman Sea: A stable isotope analysis

    NASA Astrophysics Data System (ADS)

    Henschke, Natasha; Everett, Jason D.; Suthers, Iain M.; Smith, James A.; Hunt, Brian P. V.; Doblin, Martina A.; Taylor, Matthew D.

    2015-10-01

    The trophic relationships of 21 species from an oceanic zooplankton community were studied using stable isotopes of carbon and nitrogen. Zooplankton and suspended particulate organic matter (POM) were sampled in three different water types in the western Tasman Sea: inner shelf (IS), a cold core eddy (CCE) and a warm core eddy (WCE). δ15N values ranged from 3.9‰ for the parasitic copepod Sapphirina augusta to 10.2‰ for the euphausiid, Euphausia spinifera. δ13C varied from -22.6 to -19.4‰ as a result of the copepod Euchirella curticauda and E. spinifera. The isotopic composition of POM varied significantly among water types; as did the trophic enrichment of zooplankton over POM, with the lowest enrichment in the recently upwelled IS water type (0.5‰) compared to the warm core eddy (1.6‰) and cold core eddy (2.7‰). The WCE was an oligotrophic environment and was associated with an increased trophic level for omnivorous zooplankton (copepods and euphausiids) to a similar level as carnivorous zooplankton (chaetognaths). Therefore carnivory in zooplankton can increase in response to lower abundance and reduced diversity in their phytoplankton and protozoan prey. Trophic niche width comparisons across three zooplankton species: the salp Thalia democratica, the copepod Eucalanus elongatus and the euphausiid Thysanoessa gregaria, indicated that both niche partitioning and competition can occur within the zooplankton community. We have shown that trophic relationships among the zooplankton are dynamic and respond to different water types. The changes to the zooplankton isotopic niche, however, were still highly variable as result of oceanographic variation within water types.

  10. Effects of nutrients and zooplankton on the phytoplankton community structure in Marudu Bay

    NASA Astrophysics Data System (ADS)

    Tan, Kar Soon; Ransangan, Julian

    2017-07-01

    Current study was carried out to provide a better understanding on spatial and temporal variations in the phytoplankton community structure in Marudu Bay, an important nursery ground for fishery resources within the Tun Mustapha Marine Park and Coral Triangle Initiative, and their relationship with environmental variables. Samplings were conducted monthly from April 2014 to April 2015 in Marudu Bay, Malaysia. Water samples were collected for nutrients analysis, zooplankton and phytoplankton counting. Moreover, the in situ environmental parameters were also examined. The field study showed a total of forty seven phytoplankton genera, representative of 33 families were identified. The nutrient concentrations in Marudu Bay was low (mesotrophic) throughout the year, where the phytoplankton community was often dominated by Chaetoceros spp. and Bacteriastrum spp. In general, increase in nitrate concentration triggered the bloom of centric diatom, Chaetoceros spp. and Bacteriastrum spp. in Marudu Bay. However, the bloom of these phytoplankton taxa did not occur in the presence of high ammonia concentration. In addition, high abundance of zooplankton also a limiting factor of the phytoplankton blooms particularly at end of southwest monsoon. High silica concentration promoted the growth of pennate diatoms, Proboscia spp. and Thallassionema spp., but the depletion of silica quickly terminated the bloom. Interestingly, our study showed that Chaetoceros spp., tolerated silica depletion condition, but the average cell size of this taxon reduced significantly. In summary, the phytoplankton community structure in mesotrophic environment is more sensitive to the changes in zooplankton abundance, nutrient concentration and its ratio than that in nutrient rich environments. This study also recommends that bivalve farming at industrial scale is not recommended in Marudu Bay because it potentially depletes the primary productivity hence jeopardizing the availability of live food for

  11. Latitudinal distribution of zooplankton communities in the Western Pacific along 160°E during summer 2014

    NASA Astrophysics Data System (ADS)

    Sun, Dong; Wang, Chunsheng

    2017-05-01

    A total of 51 mesozooplankton samples collected with a WP2 net from 0 to 200 m depth along 160°E (4°S-46°N) in the Western Pacific from June to July 2014 were analyzed. The latitudinal distribution of mesozooplankton community structure was analyzed. The average biomass and abundance in different provinces generally increased with latitude: the biomass of zooplankton ranged from 1.18 mg DW m- 3 (11°N) to 97.81 mg DW m- 3 (45°N), and the abundance of zooplankton ranged from 45.11 ind. m- 3 (3°S) to 439.84 ind. m- 3 (41°N). The community structure of zooplankton also showed a significant latitudinal variation. At lower latitudes, calanoid copepods were the most abundant group, while cyclopoid copepods were the most abundant group at higher latitudes. Multidimensional scaling analysis of community structure and other physical/chemical/biological characteristics supported five ecological provinces in the northwestern Pacific: the Western Pacific Warm Pool Province (WARM), the North Pacific Tropical Gyre (NPTG), the North Pacific Subtropical Gyre (NPST), the Kuroshio Current Province (KURO) and the Pacific Subarctic Gyres Province (PSAG). The Kuroshio Current Province can be regarded as a transitional zone between the subarctic and northern subtropical area, and this transitional zone corresponds much more closely to the ecocline concept, rather than the ecotone concept.

  12. Changes in the pelagic crustacean zooplankton of high-boreal Island Lake, Saskatchewan, associated with uranium mining.

    PubMed

    Melville, G E

    1995-01-01

    Island Lake, Saskatchewan, has become eutrophic, subsaline (salinity between 0.5 and 3.0 g I(-1)) and contaminated with several metals over the last decade. In this study, the crustacean zooplankton community in the lake in early summer 1989 is compared to the community during the early summers of the baseline years 1978 and 1979, based on archived environmental impact assessment samples. Community composition has changed, probably because of salinization and perhaps, to a lesser extent, eutrophication. Calanoid copepods have disappeared, while the numbers of species of cyclopoid copepods and cladocerans have increased. Ceriodaphnia reticulata, present in 1988 only, was more numerous than any other species during all three years. Densities of all other species were very low in 1989, which has led to lower diversity (Simpsons Index). Predation by Chaoborus probably contributed to the low abundances in 1989. The characteristics of the zooplankton community in 1989 were very similar to those of zooplankton in culturally acidified lakes, and indicate that Island Lake is in poor health. The success of Ceriodaphnia, a standard toxicity bioassay genus, is noteworthy under such contaminated conditions. While the taxonomic changes are obvious, the zooplankton data are limited; therefore causes can only be inferred. The study demonstrates the need for more and better ecosystem-specific biological information in order to do environmental impact assessments, in this case for mining in the north.

  13. Community Structure and Standing Stock of Epibenthic Zooplankton at Five Sites in Grays Harbor, Washington

    DTIC Science & Technology

    1981-09-01

    4 GRAYS HARBOR AND CHEHALIS RIVER IMPROVEMENTS TO NAVIGATION ENVIRONMENTAL STUDIES COMMUNITY STRUCTURE AND STANDING © STOCK OF EPIBENTHIC... FISHERIES RESEARCH INSTITUTE %r UNIVERSITY OF WASHINGTON B of Engineers SEPTEMBER 1981 Seattle District(DISTRIBUTION STATEM EN T. -A-8-1 2 7 Approved...PERIOD COVERED Community Structure and Standing Stock of Final May 7. 1981 Epibenthic Zooplankton at Five Sites in 6. PERFORMING ORG. REPORT NUMBER

  14. Trophic ecology and vertical patterns of carbon and nitrogen stable isotopes in zooplankton from oxygen minimum zone regions

    NASA Astrophysics Data System (ADS)

    Williams, Rebecca L.; Wakeham, Stuart; McKinney, Rick; Wishner, Karen F.

    2014-08-01

    The unique physical and biogeochemical characteristics of oxygen minimum zones (OMZs) influence plankton ecology, including zooplankton trophic webs. Using carbon and nitrogen stable isotopes, this study examined zooplankton trophic webs in the Eastern Tropical North Pacific (ETNP) OMZ. δ13C values were used to indicate zooplankton food sources, and δ15N values were used to indicate zooplankton trophic position and nitrogen cycle pathways. Vertically stratified MOCNESS net tows collected zooplankton from 0 to 1000 m at two stations along a north-south transect in the ETNP during 2007 and 2008, the Tehuantepec Bowl and the Costa Rica Dome. Zooplankton samples were separated into four size fractions for stable isotope analyses. Particulate organic matter (POM), assumed to represent a primary food source for zooplankton, was collected with McLane large volume in situ pumps. The isotopic composition and trophic ecology of the ETNP zooplankton community had distinct spatial and vertical patterns influenced by OMZ structure. The most pronounced vertical isotope gradients occurred near the upper and lower OMZ oxyclines. Material with lower δ13C values was apparently produced in the upper oxycline, possibly by chemoautotrophic microbes, and was subsequently consumed by zooplankton. Between-station differences in δ15N values suggested that different nitrogen cycle processes were dominant at the two locations, which influenced the isotopic characteristics of the zooplankton community. A strong depth gradient in zooplankton δ15N values in the lower oxycline suggested an increase in trophic cycling just below the core of the OMZ. Shallow POM (0-110 m) was likely the most important food source for mixed layer, upper oxycline, and OMZ core zooplankton, while deep POM was an important food source for most lower oxycline zooplankton (except for samples dominated by the seasonally migrating copepod Eucalanus inermis). There was no consistent isotopic progression among the four

  15. Metagenomic insights into zooplankton‐associated bacterial communities

    PubMed Central

    Srivastava, Abhishek; Koski, Marja; Garcia, Juan Antonio L.; Takaki, Yoshihiro; Yokokawa, Taichi; Nunoura, Takuro; Elisabeth, Nathalie H.; Sintes, Eva; Herndl, Gerhard J.

    2017-01-01

    Summary Zooplankton and microbes play a key role in the ocean's biological cycles by releasing and consuming copious amounts of particulate and dissolved organic matter. Additionally, zooplankton provide a complex microhabitat rich in organic and inorganic nutrients in which bacteria thrive. In this study, we assessed the phylogenetic composition and metabolic potential of microbial communities associated with crustacean zooplankton species collected in the North Atlantic. Using Illumina sequencing of the 16S rRNA gene, we found significant differences between the microbial communities associated with zooplankton and those inhabiting the surrounding seawater. Metagenomic analysis of the zooplankton‐associated microbial community revealed a highly specialized bacterial community able to exploit zooplankton as microhabitat and thus, mediating biogeochemical processes generally underrepresented in the open ocean. The zooplankton‐associated bacterial community is able to colonize the zooplankton's internal and external surfaces using a large set of adhesion mechanisms and to metabolize complex organic compounds released or exuded by the zooplankton such as chitin, taurine and other complex molecules. Moreover, the high number of genes involved in iron and phosphorus metabolisms in the zooplankton‐associated microbiome suggests that this zooplankton‐associated bacterial community mediates specific biogeochemical processes (through the proliferation of specific taxa) that are generally underrepresented in the ambient waters. PMID:28967193

  16. COMPARISONS OF ZOOPLANKTON COMMUNITY SIZE STRUCTURE IN THE GREAT LAKES

    EPA Science Inventory

    Zooplankton mean-size and size-spectra distribution potentially reflect the condition of trophic interactions and ecosystem health because they are affected by both resource availability and planktivore pressure. We assessed zooplankton mean-size and size-spectra using an optical...

  17. Phytoplankton Composition and Abundance in Restored Maltański Reservoir under the Influence of Physico-Chemical Variables and Zooplankton Grazing Pressure

    PubMed Central

    Kozak, Anna; Gołdyn, Ryszard; Dondajewska, Renata

    2015-01-01

    In this paper we present the effects of environmental factors and zooplankton food pressure on phytoplankton in the restored man-made Maltański Reservoir (MR). Two methods of restoration: biomanipulation and phosphorus inactivation have been applied in the reservoir. Nine taxonomical groups of phytoplankton represented in total by 183 taxa were stated there. The richest groups in respect of taxa number were green algae, cyanobacteria and diatoms. The diatoms, cryptophytes, chrysophytes, cyanobacteria, green algae and euglenophytes dominated in terms of abundance and/or biomass. There were significant changes among environmental parameters resulting from restoration measures which influenced the phytoplankton populations in the reservoir. These measures led to a decrease of phosphorus concentration due to its chemical inactivation and enhanced zooplankton grazing as a result of planktivorous fish stocking. The aim of the study is to analyse the reaction of phytoplankton to the restoration measures and, most importantly, to determine the extent to which the qualitative and quantitative composition of phytoplankton depends on variables changing under the influence of restoration in comparison with other environmental variables. We stated that application of restoration methods did cause significant changes in phytoplankton community structure. The abundance of most phytoplankton taxa was negatively correlated with large zooplankton filter feeders, and positively with zooplankton predators and concentrations of ammonium nitrogen and partly of phosphates. However, restoration was insufficient in the case of decreasing phytoplankton abundance. The effects of restoration treatments were of less importance for the abundance of phytoplankton than parameters that were independent of the restoration. This was due to the continuous inflow of large loads of nutrients from the area of the river catchment. PMID:25906352

  18. Phytoplankton Composition and Abundance in Restored Maltański Reservoir under the Influence of Physico-Chemical Variables and Zooplankton Grazing Pressure.

    PubMed

    Kozak, Anna; Gołdyn, Ryszard; Dondajewska, Renata

    2015-01-01

    In this paper we present the effects of environmental factors and zooplankton food pressure on phytoplankton in the restored man-made Maltański Reservoir (MR). Two methods of restoration: biomanipulation and phosphorus inactivation have been applied in the reservoir. Nine taxonomical groups of phytoplankton represented in total by 183 taxa were stated there. The richest groups in respect of taxa number were green algae, cyanobacteria and diatoms. The diatoms, cryptophytes, chrysophytes, cyanobacteria, green algae and euglenophytes dominated in terms of abundance and/or biomass. There were significant changes among environmental parameters resulting from restoration measures which influenced the phytoplankton populations in the reservoir. These measures led to a decrease of phosphorus concentration due to its chemical inactivation and enhanced zooplankton grazing as a result of planktivorous fish stocking. The aim of the study is to analyse the reaction of phytoplankton to the restoration measures and, most importantly, to determine the extent to which the qualitative and quantitative composition of phytoplankton depends on variables changing under the influence of restoration in comparison with other environmental variables. We stated that application of restoration methods did cause significant changes in phytoplankton community structure. The abundance of most phytoplankton taxa was negatively correlated with large zooplankton filter feeders, and positively with zooplankton predators and concentrations of ammonium nitrogen and partly of phosphates. However, restoration was insufficient in the case of decreasing phytoplankton abundance. The effects of restoration treatments were of less importance for the abundance of phytoplankton than parameters that were independent of the restoration. This was due to the continuous inflow of large loads of nutrients from the area of the river catchment.

  19. The ICES Working Group on Zooplankton Ecology: Accomplishments of the first 25 years

    NASA Astrophysics Data System (ADS)

    Wiebe, Peter H.; Harris, Roger; Gislason, Astthor; Margonski, Piotr; Skjoldal, Hein Rune; Benfield, Mark; Hay, Steve; O'Brien, Todd; Valdés, Luis

    2016-02-01

    The ICES Study Group on Zooplankton Ecology was created in 1991 to address issues of current and future concern within the field of zooplankton ecology. Within three years it became the ICES Working Group on Zooplankton Ecology (ICES WGZE) and this unique group in the world's oceanographic community has now been active for 25 years. This article reviews and synthesizes the products, and major accomplishments of the group. Achievements of the group, including the Zooplankton Methodology Manual, the Zooplankton Status Reports, and the International Zooplankton Symposia, have had an important impact on the wider field. Among the future issues that remain to be addressed by the group are the assessment of exploratory fisheries on zooplankton and micronekton species; further development of the zooplankton time-series; compilation and integration of allometric relationships for zooplankton species, and evaluation of new methodologies for the study of zooplankton distribution, abundance, physiology, and genetics. Marine science is an increasingly global undertaking and groups such as the ICES WGZE will continue to be essential to the advancement of understanding of zooplankton community structure and population dynamics in the world's oceans.

  20. Impact of moderate silver carp biomass gradient on zooplankton communities in a eutrophic reservoir. Consequences for the use of silver carp in biomanipulation.

    PubMed

    Domaizon, I; Dévaux, J

    1999-07-01

    We examined the impacts of moderate gradient silver carp biomass (five levels from 0 to 36 g.m-3, i.e. about 0-792 kg.ha-1) on zooplankton communities of the eutrophic Villerest reservoir (France). During our mesocosm experiment changes in zooplankton assemblages were dependent on silver carp biomass. In the fishless and low fish biomass treatments, zooplankton abundance increased through time, owing to a peak in cladoceran density, but decreased (mainly cladocerans) at highest fish biomass. Copepods and rotifers were less affected at the highest fish biomass and dominated zooplankton communities. We highlighted that the presence of high silver carp biomass could lead to changes in phytoplankton assemblage via the impact on herbivorous zooplankton. Since silver carp efficiently graze on particles > 20 microns, the suppression of herbivorous cladocerans could result in an increase in small size algae (< 20 microns) abundance since these species would be released from grazers as well as competitors (large algae grazed by silver carp) and nutrients levels would be enhanced by fish internal loading. Our results showed that the use of low silver carp biomass (< 200 kg.ha-1) would allow us to minimize these negative effects.

  1. Feeding on dispersed vs. aggregated particles: The effect of zooplankton feeding behavior on vertical flux.

    PubMed

    Koski, Marja; Boutorh, Julia; de la Rocha, Christina

    2017-01-01

    Zooplankton feeding activity is hypothesized to attenuate the downward flux of elements in the ocean. We investigated whether the zooplankton community composition could influence the flux attenuation, due to the differences of feeding modes (feeding on dispersed vs. aggregated particles) and of metabolic rates. We fed 5 copepod species-three calanoid, one harpacticoid and one poecilamastoid-microplankton food, in either dispersed or aggregated form and measured rates of respiration, fecal pellet production and egg production. Calanoid copepods were able to feed only on dispersed food; when their food was introduced as aggregates, their pellet production and respiration rates decreased to rates observed for starved individuals. In contrast, harpacticoids and the poecilamastoid copepod Oncaea spp. were able to feed only when the food was in the form of aggregates. The sum of copepod respiration, pellet production and egg production rates was equivalent to a daily minimum carbon demand of ca. 10% body weight-1 for all non-feeding copepods; the carbon demand of calanoids feeding on dispersed food was 2-3 times greater, and the carbon demand of harpacticoids and Oncaea spp. feeding on aggregates was >7 times greater, than the resting rates. The zooplankton species composition combined with the type of available food strongly influences the calculated carbon demand of a copepod community, and thus also the attenuation of vertical carbon flux.

  2. Feeding on dispersed vs. aggregated particles: The effect of zooplankton feeding behavior on vertical flux

    PubMed Central

    Boutorh, Julia; de la Rocha, Christina

    2017-01-01

    Zooplankton feeding activity is hypothesized to attenuate the downward flux of elements in the ocean. We investigated whether the zooplankton community composition could influence the flux attenuation, due to the differences of feeding modes (feeding on dispersed vs. aggregated particles) and of metabolic rates. We fed 5 copepod species—three calanoid, one harpacticoid and one poecilamastoid–microplankton food, in either dispersed or aggregated form and measured rates of respiration, fecal pellet production and egg production. Calanoid copepods were able to feed only on dispersed food; when their food was introduced as aggregates, their pellet production and respiration rates decreased to rates observed for starved individuals. In contrast, harpacticoids and the poecilamastoid copepod Oncaea spp. were able to feed only when the food was in the form of aggregates. The sum of copepod respiration, pellet production and egg production rates was equivalent to a daily minimum carbon demand of ca. 10% body weight-1 for all non-feeding copepods; the carbon demand of calanoids feeding on dispersed food was 2–3 times greater, and the carbon demand of harpacticoids and Oncaea spp. feeding on aggregates was >7 times greater, than the resting rates. The zooplankton species composition combined with the type of available food strongly influences the calculated carbon demand of a copepod community, and thus also the attenuation of vertical carbon flux. PMID:28545095

  3. UV radiation and freshwater zooplankton: damage, protection and recovery

    PubMed Central

    Rautio, Milla; Tartarotti, Barbara

    2011-01-01

    While many laboratory and field studies show that zooplankton are negatively affected when exposed to high intensities of ultraviolet radiation (UVR), most studies also indicate that zooplankton are well adapted to cope with large variations in their UVR exposure in the pelagic zone of lakes. The response mechanisms of zooplankton are diverse and efficient and may explain the success and richness of freshwater zooplankton in optically variable waters. While no single behavioural or physiological protection mechanism seems to be superior, and while several unexplained and contradictory patterns exist in zooplankton UVR ecology, recent increases in our understanding are consistent with UVR playing an important role for zooplankton. This review examines the variability in freshwater zooplankton responses to UVR, with a focus on crustacean zooplankton (Cladocera and Copepoda). We present an overview of UVR-induced damages, and the protection and recovery mechanisms freshwater zooplankton use when exposed to UVR. We review the current knowledge of UVR impact on freshwater zooplankton at species and community levels, and discuss briefly how global change over the last three decades has influenced the UVR milieu in lakes. PMID:21516254

  4. Zooplankton and the Ocean Carbon Cycle.

    PubMed

    Steinberg, Deborah K; Landry, Michael R

    2017-01-03

    Marine zooplankton comprise a phylogenetically and functionally diverse assemblage of protistan and metazoan consumers that occupy multiple trophic levels in pelagic food webs. Within this complex network, carbon flows via alternative zooplankton pathways drive temporal and spatial variability in production-grazing coupling, nutrient cycling, export, and transfer efficiency to higher trophic levels. We explore current knowledge of the processing of zooplankton food ingestion by absorption, egestion, respiration, excretion, and growth (production) processes. On a global scale, carbon fluxes are reasonably constrained by the grazing impact of microzooplankton and the respiratory requirements of mesozooplankton but are sensitive to uncertainties in trophic structure. The relative importance, combined magnitude, and efficiency of export mechanisms (mucous feeding webs, fecal pellets, molts, carcasses, and vertical migrations) likewise reflect regional variability in community structure. Climate change is expected to broadly alter carbon cycling by zooplankton and to have direct impacts on key species.

  5. Fine-scale distribution of zooplankton is linked to phytoplankton species composition and abundance in a North Norwegian fjord system

    NASA Astrophysics Data System (ADS)

    Norrbin, F.; Priou, P. D.; Varela, A. P.

    2016-02-01

    We studied the influence of dense layers of phytoplankton and aggregates on shaping the vertical distribution of zooplankton in a North Norwegian fjord using a Video Plankton Recorder (VPR). This instrument provided fine-scale vertical distribution (cm-m scale) of planktonic organisms as well as aggregates of marine snow in relation to environmental conditions. At the height - later stage of the spring phytoplankton bloom in May, the outer part of the fjord was dominated by Phaeocystis pouchetii, while diatoms (Chaetoceros spp.) were dominating in the innermost basin. Small copepods species like Pseudocalanus spp., Microsetella norvegica, and Oithona spp. prevailed over larger copepod species in the inner part of the fjord whereas the outer part was dominated by large copepods like Calanus finmarchicus. While the zooplankton where spread out over the water column during the early stage of the bloom, in May they were linked to the phytoplankton vertical distribution and in the winter situation they were found in deeper waters. Herbivorous zooplankton species were affected by phytoplankton species composition; C. finmarchicus and Pseudocalanus spp. avoided the dense layer of P. pouchetii while herbivorous zooplankton matched the distribution of the diatom-dominated bloom. Small, omnivorous copepod species like Microsetella sp., Oithona sp. and Pseudocalanus sp. were often associated with dense layers of snow aggregates. This distribution may provide a shelter from predators as well as a food source. Natural or anthropogenic-induced changes in phytoplankton composition and aggregate distribution may thus influence food-web interactions.

  6. A meta-analysis of zooplankton functional traits influencing ecosystem function.

    PubMed

    Hébert, Marie-Pier; Beisner, Beatrix E; Maranger, Roxane

    2016-04-01

    The use of functional traits to characterize community composition has been proposed as a more effective way to link community structure to ecosystem functioning. Organismal morphology, body stoichiometry, and physiology can be readily linked to large-scale ecosystem processes through functional traits that inform on interspecific and species-environment interactions; yet such effect traits are still poorly included in trait-based approaches. Given their key trophic position in aquatic ecosystems, individual zooplankton affect energy fluxes and elemental processing. We compiled a large database of zooplankton traits contributing to carbon, nitrogen, and phosphorus cycling and examined the effect of classification and habitat (marine vs. freshwater) on trait relationships. Respiration and nutrient excretion rates followed mass-dependent scaling in both habitats, with exponents ranging from 0.70 to 0.90. Our analyses revealed surprising differences in allometry and respiration between habitats, with freshwater species having lower length-specific mass and three times higher mass-specific respiration rates. These differences in traits point to implications for ecological strategies as well as overall carbon storage and fluxes based on habitat type. Our synthesis quantifies multiple trait relationships and links organisms to ecosystem processes they influence, enabling a more complete integration of aquatic community ecology and biogeochemistry through the promising use of effect traits.

  7. Impact of climate change on zooplankton communities, seabird populations and arctic terrestrial ecosystem—A scenario

    NASA Astrophysics Data System (ADS)

    Stempniewicz, Lech; Błachowiak-Samołyk, Katarzyna; Węsławski, Jan M.

    2007-11-01

    Many arctic terrestrial ecosystems suffer from a permanent deficiency of nutrients. Marine birds that forage at sea and breed on land can transport organic matter from the sea to land, and thus help to initiate and sustain terrestrial ecosystems. This organic matter initiates the emergence of local tundra communities, increasing primary and secondary production and species diversity. Climate change will influence ocean circulation and the hydrologic regime, which will consequently lead to a restructuring of zooplankton communities between cold arctic waters, with a dominance of large zooplankton species, and Atlantic waters in which small species predominate. The dominance of large zooplankton favours plankton-eating seabirds, such as the little auk ( Alle alle), while the presence of small zooplankton redirects the food chain to plankton-eating fish, up through to fish-eating birds (e.g., guillemots Uria sp.). Thus, in regions where the two water masses compete for dominance, such as in the Barents Sea, plankton-eating birds should dominate the avifauna in cold periods and recess in warmer periods, when fish-eaters should prevail. Therefore under future anthropogenic climate scenarios, there could be serious consequences for the structure and functioning of the terrestrial part of arctic ecosystems, due in part to changes in the arctic marine avifauna. Large colonies of plankton-eating little auks are located on mild mountain slopes, usually a few kilometres from the shore, whereas colonies of fish-eating guillemots are situated on rocky cliffs at the coast. The impact of guillemots on the terrestrial ecosystems is therefore much smaller than for little auks because of the rapid washing-out to sea of the guano deposited on the seabird cliffs. These characteristics of seabird nesting sites dramatically limit the range of occurrence of ornithogenic soils, and the accompanying flora and fauna, to locations where talus-breeding species occur. As a result of climate

  8. Effects of drought and pluvial periods on fish and zooplankton communities in prairie lakes: systematic and asystematic responses.

    PubMed

    Starks, Elizabeth; Cooper, Ryan; Leavitt, Peter R; Wissel, Björn

    2014-04-01

    The anticipated impacts of climate change on aquatic biota are difficult to evaluate because of potentially contrasting effects of temperature and hydrology on lake ecosystems, particularly those closed-basin lakes within semiarid regions. To address this shortfall, we quantified decade-scale changes in chemical and biological properties of 20 endorheic lakes in central North America in response to a pronounced transition from a drought to a pluvial period during the early 21st century. Lakes exhibited marked temporal changes in chemical characteristics and formed two discrete clusters corresponding to periods of substantially different effective moisture (as Palmer Drought Severity Index, PDSI). Discriminant function analysis (DFA) explained 90% of variability in fish assemblage composition and showed that fish communities were predicted best by environmental conditions during the arid interval (PDSI <-2). DFA also predicted that lakes could support more fish species during pluvial periods, but their occurrences may be limited by periodic stress due to recurrent droughts and physical barriers to colonization. Zooplankton taxonomic assemblages in fishless lakes were resilient to short-term changes in meteorological conditions, and did not vary between drought and deluge periods. Conversely, zooplankton taxa in fish-populated lakes decreased substantially in biomass during the wet interval, likely due to increased zooplanktivory by fish. The powerful effects of such climatic variability on hydrology and the strong subsequent links to water chemistry and biota indicate that future changes in global climate could result in significant restructuring of aquatic communities. Together these findings suggest that semiarid lakes undergoing temporary climate shifts provide a useful model system for anticipating the effects of global climate change on lake food webs. © 2013 John Wiley & Sons Ltd.

  9. Seasonal dynamics of zooplankton in Columbia–Snake River reservoirs,with special emphasis on the invasive copepod Pseudodiaptomus forbesi

    USGS Publications Warehouse

    Emerson, Joshua E.; Bollens, Stephen M.; Counihan, Timothy D.

    2015-01-01

    The Asian copepod Pseudodiaptomus forbesi has recently become established in the Columbia River. However, little is known about its ecology and effects on invaded ecosystems. We undertook a 2-year (July 2009 to June 2011) field study of the mesozooplankton in four reservoirs in the Columbia and Snake Rivers, with emphasis on the relation of the seasonal variation in distribution and abundance of P. forbesi to environmental variables. Pseudodiaptomus forbesi was abundant in three reservoirs; the zooplankton community of the fourth reservoir contained no known non-indigenous taxa. The composition and seasonal succession of zooplankton were similar in the three invaded reservoirs: a bloom of rotifers occurred in spring, native cyclopoid and cladoceran species peaked in abundance in summer, and P. forbesi was most abundant in late summer and autumn. In the uninvaded reservoir, total zooplankton abundance was very low year-round. Multivariate ordination indicated that temperature and dissolved oxygen were strongly associated with zooplankton community structure, with P. forbesi appearing to exhibit a single generation per year . The broad distribution and high abundance of P. forbesi in the Columbia–Snake River System could result in ecosystem level effects in areas intensively managed to improve conditions for salmon and other commercially and culturally important fish species. 

  10. Using occupancy modeling to compare traditional versus DNA metabarcoding methods for characterizing zooplankton biodiversity

    EPA Science Inventory

    DNA metabarcoding tools could increase our ability to detect changes in zooplankton communities and to detect invasive zooplankton taxa while they are still rare. Nonetheless, the use of DNA-metabarcoding for characterizing zooplankton biodiversity in the Great Lakes has not bee...

  11. Spatial patterns in assemblage structures of pelagic forage fish and zooplankton in western Lake Superior

    USGS Publications Warehouse

    Johnson, Timothy B.; Hoff, Michael H.; Trebitz, Anett S.; Bronte, Charles R.; Corry, Timothy D.; Kitchell, James F.; Lozano, Stephen J.; Mason, Doran M.; Scharold, Jill V.; Schram, Stephen T.; Schreiner, Donald R.

    2004-01-01

    We assessed abundance, size, and species composition of forage fish and zooplankton communities of western Lake Superior during August 1996 and July 1997. Data were analyzed for three ecoregions (Duluth-Superior, Apostle Islands, and the open lake) differing in bathymetry and limnological and biological patterns. Zooplankton abundance was three times higher in the Duluth-Superior and Apostle Islands regions than in the open lake due to the large numbers of rotifers. Copepods were far more abundant than Cladocera in all ecoregions. Mean zooplankton size was larger in the open lake due to dominance by large calanoid copepods although size of individual taxa was similar among ecoregions. Forage fish abundance and biomass was highest in the Apostle Islands region and lowest in the open lake ecoregion. Lake herring (Coregonus artedi), rainbow smelt (Osmerus mordax) and deepwater ciscoes (Coregonus spp.) comprised over 90% of the abundance and biomass of fishes caught in midwater trawls and recorded with hydroacoustics. Growth and condition of fish was good, suggesting they were not resource limited. Fish and zooplankton assemblages differed among the three ecoregions of western Lake Superior, due to a combination of physical and limnological factors related to bathymetry and landscape position.

  12. Temporal and spatial variability of zooplankton on the Faroe shelf in spring 1997-2016

    NASA Astrophysics Data System (ADS)

    Jacobsen, Sólvá; Gaard, Eilif; Larsen, Karin Margretha Húsgarð; Eliasen, Sólvá Káradóttir; Hátún, Hjálmar

    2018-01-01

    Zooplankton availability during spring and summer determines the growth and survival of first-feeding fish larvae, and thus impacts the recruitment to both fish prey species and commercial fish stocks. On the Faroe shelf, however, the relative importance of oceanic versus neritic zooplankton species has hitherto not been well understood. In this study, spatio-temporal variability in zooplankton community structure and size spectra on the Faroe shelf is investigated using observations from late April during the period 1997-2016. The main objective was to explore which environmental variables influence the zooplankton community structure in early spring. The zooplankton community in the permanently well mixed central shelf inside the tidal front consists of a mixture of neritic, cosmopolitan and oceanic species. In this region, redundancy analyses showed that chlorophyll concentration had a positive effect on abundance of neritic copepods and meroplankton as well as all zooplankton < 1.2 mm. The abundance variability of these species shows increased production around 2000 and 2008-2009. The highest zooplankton abundance, mainly consisting of Calanus finmarchicus, is however observed off-shore from the tidal front, especially on the western side of the Faroe Plateau. A shift in C. finmarchicus phenology occurred around 2007, resulting in earlier reproduction of this species, and this variability could not be explained by the employed regional environmental parameters. Our results indicate that the Faroe shelf biological production is more dependent on the local primary production and neritic zooplankton species than on the large oceanic C. finmarchicus stock.

  13. Indicator Properties of Baltic Zooplankton for Classification of Environmental Status within Marine Strategy Framework Directive.

    PubMed

    Gorokhova, Elena; Lehtiniemi, Maiju; Postel, Lutz; Rubene, Gunta; Amid, Callis; Lesutiene, Jurate; Uusitalo, Laura; Strake, Solvita; Demereckiene, Natalja

    2016-01-01

    The European Marine Strategy Framework Directive requires the EU Member States to estimate the level of anthropogenic impacts on their marine systems using 11 Descriptors. Assessing food web response to altered habitats is addressed by Descriptor 4 and its indicators, which are being developed for regional seas. However, the development of simple foodweb indicators able to assess the health of ecologically diverse, spatially variable and complex interactions is challenging. Zooplankton is a key element in marine foodwebs and thus comprise an important part of overall ecosystem health. Here, we review work on zooplankton indicator development using long-term data sets across the Baltic Sea and report the main findings. A suite of zooplankton community metrics were evaluated as putative ecological indicators that track community state in relation to Good Environmental Status (GES) criteria with regard to eutrophication and fish feeding conditions in the Baltic Sea. On the basis of an operational definition of GES, we propose mean body mass of zooplankton in the community in combination with zooplankton stock measured as either abundance or biomass to be applicable as an integrated indicator that could be used within the Descriptor 4 in the Baltic Sea. These metrics performed best in predicting zooplankton being in-GES when considering all datasets evaluated. However, some other metrics, such as copepod biomass, the contribution of copepods to the total zooplankton biomass or biomass-based Cladocera: Copepoda ratio, were equally reliable or even superior in certain basin-specific assessments. Our evaluation suggests that in several basins of the Baltic Sea, zooplankton communities currently appear to be out-of-GES, being comprised by smaller zooplankters and having lower total abundance or biomass compared to the communities during the reference conditions; however, the changes in the taxonomic structure underlying these trends vary widely across the sea basins due to

  14. River discharge as a major driving force on spatial and temporal variations in zooplankton biomass and community structure in the Godavari estuary India.

    PubMed

    Venkataramana, V; Sarma, V V S S; Matta Reddy, Alavala

    2017-08-28

    Variability in horizontal zooplankton biomass distribution was investigated over 13 months in the Godavari estuary, along with physical (river discharge, temperature, salinity), chemical (nutrients, particulate organic matter), biological (phytoplankton biomass), and geological (suspended matter) properties to examine the influencing factors on their spatial and temporal variabilities. The entire estuary was filled with freshwater during peak discharge period and salinity near zero, increased to ~ 34 psu during dry period with relatively high nutrient levels during former than the latter period. Due to low flushing time (< 1 day) and high suspended load (> 500 mg L -1 ) during peak discharge period, picoplankton (cyanophyceae) contributed significantly to the phytoplankton biomass (Chl-a) whereas microplankton and nanoplankton (bacillariophyceae, and chlorophyceae) during moderate and mostly microplankton during dry period. Zooplankton biomass was the lowest during peak discharge period and increased during moderate followed by dry period. The zooplankton abundance was controlled by dead organic matter during peak discharge period, while both phytoplankton biomass and dead organic matter during moderate discharge and mostly phytoplankton biomass during dry period. This study suggests that significant modification of physico-chemical properties by river discharge led to changes in phytoplankton composition and dead organic matter concentrations that alters biomass, abundance, and composition of zooplankton in the Godavari estuary.

  15. Zooplankton communities and Bythotrephes longimanus in lakes of the montane region of the northern Alps

    PubMed Central

    Horváth, Zsófia; Vad, Csaba F.; Preiler, Christian; Birtel, Julia; Matthews, Blake; Ptáčníková, Radka; Ptáčník, Robert

    2017-01-01

    Abstract Lakes in the Alps represent a considerable fraction of nutrient-poor lakes in Central Europe, with unique biodiversity and ecosystem properties. Although some individual lakes are well studied, less knowledge is available on large-scale patterns essential to general understanding of their functioning. Here, we aimed to describe crustacean zooplankton communities (Cladocera, Copepoda) and identify their environmental drivers in the pelagic zone of 54 oligotrophic lakes in the montane region of the Alps (400–1200 m) in Austria, Germany, and Switzerland, covering a spatial scale of 650 km. Moreover, we aimed to provide data on the distribution and ecological requirements of the North American invader Bythotrephes longimanus in its Central European native range. Communities were mainly dominated by widespread species typical of lowland habitats, and only a few true specialists of oligotrophic alpine lakes were present. The most frequent taxa were the Daphnia longispina complex and Eudiaptomus gracilis, with 48 and 45 occurrences, respectively. Species richness decreased with altitude and increased with lake area. The main structuring factors of community composition were chlorophyll a concentration and depth, which drove an apparent separation of mesotrophic and oligotrophic communities. Bythotrephes had 13 occurrences, showing a preference for deep oligotrophic lakes. Its presence was not coupled with lower crustacean species richness, as was repeatedly observed in North America. Additionally, it frequently co-occurred with the other large predatory cladoceran, Leptodora kindtii. B. longimanus might be considered a truly montane species in Central Europe, given its absence in lowland and alpine lakes. PMID:28824797

  16. Zooplankton communities and Bythotrephes longimanus in lakes of the montane region of the northern Alps

    PubMed Central

    Horváth, Zsófia; Vad, Csaba F.; Preiler, Christian; Birtel, Julia; Matthews, Blake; Ptáčníková, Radka; Ptacnik, Robert

    2017-01-01

    Lakes in the Alps represent a considerable fraction of nutrient-poor lakes in Central Europe, with unique biodiversity and ecosystem properties. Although some individual lakes are well-studied, less knowledge is available on large-scale patterns essential to generalise the understanding of their functioning. Here, we aimed to describe crustacean zooplankton communities (Cladocera, Copepoda) and identify their environmental drivers in the pelagic zone of 54 oligotrophic lakes in the montane region of the Alps (400–1200 m) in Austria, Germany, and Switzerland, covering a spatial scale of 650 km. Moreover, we aimed to provide data on the distribution and ecological requirements of the North American invader Bytotrephes longimanus in its Central European native range. Communities were mainly dominated by widespread species typical of lowland habitats, and only a few true specialists of oligotrophic alpine lakes were present. The most frequent taxa were the Daphnia longispina complex and Eudiaptomus gracilis, with 48 and 45 occurrences, respectively. Species richness decreased with altitude and increased with lake area. The main structuring factors of community composition were chlorophyll a concentration and depth, which drove an apparent separation of mesotrophic and oligotrophic communities. Bytotrephes had 13 occurrences, showing a preference for deep oligotrophic lakes. Its presence was not coupled with lower crustacean species richness as it was repeatedly observed in North America. Additionally, it frequently co-occurred with the other large predatory cladoceran, Leptodora kindtii. B. longimanus might be considered a truly montane species in Central Europe, given its absence in lowland and alpine lakes. PMID:28649318

  17. Effects of hydrology on zooplankton communities in high-mountain ponds, Mount Rainier National Park, USA

    USGS Publications Warehouse

    Girdner, Scott; Larson, Gary L.

    1995-01-01

    Ten high-mountain ponds in Mount Rainier National Park, Washington State, were studied from ice-out in June through September1992 to investigate the influences of fluctuating pond volumes on zooplankton communities. All of the ponds were at maximum volume immediately after ice-out. The temporary pond with the shortest wet phase was inhabited by rotifer taxa with short generation times and a crustacean taxon with the ability to encyst as drought-resistant resting bodies at immature stages of development. Dominant zooplankton taxa in three other temporary ponds and six permanent ponds were similar. Rotifer densities typically were lower in temporary ponds relative to those in permanent ponds, although Brachionus urceolaris was abundant shortly before the temporary ponds dried. Large volume loss was associated with large declines in total abundances of crustacean populations. Daphnia rosea was not present in temporary ponds following fall recharge. In deep-permanent ponds, copepods had slower developmental rates, smaller temporal changes in total abundances of crustacean populations and two additional large-bodied crustacean taxa were present relative to the characteristics of crustacean communities in shallow-permanent ponds. Owing to their small sizes and sensitivity to environmental change, collectively ponds such as these may provide an early signal of long-term climate change in aquatic systems.

  18. Characterization of Lake Michigan coastal lakes using zooplankton assemblages

    USGS Publications Warehouse

    Whitman, Richard L.; Nevers, Meredith B.; Goodrich, Maria L.; Murphy, Paul C.; Davis, Bruce M.

    2004-01-01

    Zooplankton assemblages and water quality were examined bi-weekly from 17 April to 19 October 1998 in 11 northeastern Lake Michigan coastal lakes of similar origin but varied in trophic status and limnological condition. All lakes were within or adjacent to Sleeping Bear Dunes National Lakeshore, Michigan. Zooplankton (principally microcrustaceans and rotifers) from triplicate Wisconsin net (80 I?m) vertical tows taken at each lake's deepest location were analyzed. Oxygen-temperature-pH-specific conductivity profiles and surface water quality were concurrently measured. Bray-Curtis similarity analysis showed small variations among sample replicates but large temporal differences. The potential use of zooplankton communities for environmental lake comparisons was evaluated by means of BIOENV (Primer 5.1) and principal component analyses. Zooplankton analyzed at the lowest identified taxonomic level yielded greatest sensitivity to limnological variation. Taxonomic and ecological aggregations of zooplankton data performed comparably, but less well than the finest taxonomic analysis. Secchi depth, chlorophyll a, and sulfate concentrations combined to give the best correlation with patterns of variation in the zooplankton data set. Principal component analysis of these variables revealed trophic status as the most influential major limnological gradient among the study lakes. Overall, zooplankton abundance was an excellent indicator of variation in trophic status.

  19. Zooplankton and Micronekton Distribution and Interaction with Predators at the Northwest Atlantic Shelf Break and its Canyons

    DTIC Science & Technology

    2014-09-30

    with marine mammals and other predators . APPROACH The datasets being examined in this project include: 1. Depth-stratified net samples from 1...with Predators at the Northwest Atlantic Shelf Break and its Canyons Gareth L. Lawson, Andone C. Lavery, & Peter H. Wiebe Woods Hole...determining the distribution, abundance, and community composition of zooplankton and micronekton and their association with predators (including marine

  20. Ecology of selected marine communities in Glacier Bay: Zooplankton, forage fish, seabirds and marine mammals

    USGS Publications Warehouse

    Robards, Martin D.; Drew, Gary S.; Piatt, John F.; Anson, Jennifer Marie; Abookire, Alisa A.; Bodkin, James L.; Hooge, Philip N.; Speckman, Suzann G.

    2003-01-01

    We studied oceanography (including primary production), secondary production, small schooling fish (SSF), and marine bird and mammal predators in Glacier Bay during 1999 and 2000. Results from these field efforts were combined with a review of current literature relating to the Glacier Bay environment. Since the conceptual model developed by Hale and Wright (1979) ‘changes and cycles’ continue to be the underlying theme of the Glacier Bay ecosystem. We found marked seasonality in many of the parameters that we investigated over the two years of research, and here we provide a comprehensive description of the distribution and relative abundance of a wide array of marine biota. Glacier Bay is a tidally mixed estuary that leads into basins, which stratify in summer, with the upper arms behaving as traditional estuaries. The Bay is characterized by renewal and mixing events throughout the year, and markedly higher primary production than in many neighboring southeast Alaska fjords (Hooge and Hooge, 2002). Zooplankton diversity and abundance within the upper 50 meters of the water column in Glacier Bay is similar to communities seen throughout the Gulf of Alaska. Zooplankton in the lower regions of Glacier Bay peak in abundance in late May or early June, as observed at Auke Bay and in the Gulf of Alaska. The key distinction between the lower Bay and other estuaries in the Gulf of Alaska is that a second smaller peak in densities occurs in August. The upper Bay behaved uniformly in temporal trends, peaking in July. Densities had begun to decline in August, but were still more than twice those observed in that region in May. The highest density of zooplankton observed was 17,870 organisms/m3 in Tarr Inlet during July. Trends in zooplankton community abundance and diversity within the lower Bay were distinct from upper-Glacier Bay trends. Whereas the lower Bay is strongly influenced by Gulf of Alaska processes, local processes are the strongest influence in the upper

  1. Spatial patterns of littoral zooplankton assemblages along a salinity gradient in a brackish sea: A functional diversity perspective

    NASA Astrophysics Data System (ADS)

    Helenius, Laura K.; Leskinen, Elina; Lehtonen, Hannu; Nurminen, Leena

    2017-11-01

    The distribution patterns and diversity of littoral zooplankton are both key baseline information for understanding the functioning of coastal ecosystems, and for identifying the mechanisms by which the impacts of recently increased eutrophication are transferred through littoral food webs. In this study, zooplankton community structure and diversity along a shallow coastal area of the northern Baltic Sea were determined in terms of horizontal environmental gradients. Spatial heterogeneity of the zooplankton community was examined along the gradient. Altogether 31 sites in shallow sandy bays on the coast of southwest Finland were sampled in the summer periods of 2009 and 2010 for zooplankton and environmental variables (surface water temperature, salinity, turbidity, wave exposure, macrophyte coverage, chlorophyll a and nutrients). Zooplankton diversity was measured as both taxonomic as well as functional diversity, using trait-based classification of planktonic crustaceans. Salinity, and to a lesser extent turbidity and temperature, were found to be the main predictors of the spatial patterns and functional diversity of the zooplankton community. Occurrence of cyclopoid copepods, as well as abundances of the calanoid copepod genus Acartia and the rotifer genus Keratella were found to be key factors in differentiating sites along the gradient. As far as we know, this is the first extensive study of functional diversity in Baltic Sea coastal zooplankton communities.

  2. Astaxanthin dynamics in Baltic Sea mesozooplankton communities

    NASA Astrophysics Data System (ADS)

    Snoeijs, Pauline; Häubner, Norbert

    2014-01-01

    The red pigment astaxanthin is a powerful antioxidant, which occurs in eggs and body tissues of crustaceans and fish. It is produced by crustaceans from algal carotenoids. In a two-year field study we assessed natural concentrations and dynamics of astaxanthin in mesozooplankton communities in the brackish Baltic Sea area. Astaxanthin levels varied between 0.37 and 36 ng L- 1. They increased with salinity along the Baltic Sea gradient and were linked to zooplankton biomass and phytoplankton community composition. Astaxanthin concentrations showed typical seasonal patterns and varied from 0.2 to 5.1 ng ind- 1, 0.2 to 3.4 ng (μg C)- 1 and 6 to 100 ng mm- 3. These concentrations were inversely related to water temperature and strongly linked to zooplankton community composition. Communities dominated by the calanoid copepods Temora longicornis, Pseudocalanus acuspes and Eurytemora spp. generally held the highest concentrations. With increasing cladocerans:copepods biomass ratios community astaxanthin concentrations decreased and with higher relative biomass of Acartia spp. the proportion of astaxanthin diesters decreased. Diesters prevailed in the cold season and they are thought to improve the antioxidant protection of storage lipids during winter. Climate change causes higher temperature and lower salinity in the Baltic Sea proper. This modifies zooplankton community composition, but not necessarily into a community with lower concentrations of astaxanthin since T. longicornis (high concentrations) has been reported to increase with higher temperature. However, decreased astaxanthin production in the ecosystem is expected if a basin-wide increase in the cladocerans:copepods biomass ratios would occur with further climate change.

  3. [Phytoplankton and zooplankton of the industrial reservoir R-9 (Lake Karachay)].

    PubMed

    Priakhin, E A; Triapitsina, G A; Atamaniuk, N I; Osipov, D I; Stukalov, P M; Ivanov, I A; Popova, I Ia; Akleev, A V

    2012-01-01

    Planktonic communities of the Reservoir-9 (Lake Karachay, storage reservoir of liquid medium-level radioactive waste of the Mayak Production Association) are exposed to the severe radioactive forcing (in 2010 the total beta-activity of the water was 1.8 x 10(7) Bq/L, total alpha-activity was 1.1 x 10(4) Bq/L), aswell as to the chemical contamination (level of nitrates in water 4.1 g/L). The calculated values of the absorbed dose rate were 130 Gy/day for phytoplankton and 4.0 Gy/day for zooplankton. Extremely low species diversity, the overwhelming dominance of one species (phytoplankton is close to a monoculture of ubiquitous cyanobacteria Geitlerinema amphibium, zooplankton--to a monoculture of rotifers Hexarthrafennica), wide fluctuations in numbers of algae, a low number of zooplankton were the most substantial characteristics of the plankton communities in Lake Karachay. So, plankton communities status is a sign of environmental retrogress in this ecosystem.

  4. Seasonal cycles of zooplankton from San Francisco Bay

    USGS Publications Warehouse

    Ambler, Julie W.; Cloern, James E.; Hutchinson, Anne

    1985-01-01

    Seasonal cycles of zooplankton abundance appear to be constant among years (1978–1981) and are similar in the deep (>10 m) channels and lateral shoals (<3 m). The seasonal zooplankton community dynamics are discussed in relation to: (1) river discharge which alters salinity distribution and residence time of plankton; (2) temperature which induces production and hatching of dormant copepod eggs; (3) coastal hydrography which brings neritic copepods of different zoogeographic affinities into the bay; and (4) seasonal cycles of phytoplankton.

  5. Effect of Main-stem Dams on Zooplankton Communities of the Missouri River (USA)

    EPA Science Inventory

    We examined the distribution and abundance of zooplankton from 146 sites on the Missouri River and found large shifts in the dominance of major taxa between management zones of this regulated river. Crustacean zooplankton were dominant in the inter-reservoir zone of the river, an...

  6. A compilation of quantitative functional traits for marine and freshwater crustacean zooplankton.

    PubMed

    Hébert, Marie-Pier; Beisner, Beatrix E; Maranger, Roxane

    2016-04-01

    This data compilation synthesizes 8609 individual observations and ranges of 13 traits from 201 freshwater and 191 marine crustacean taxa belonging to either Copepoda or Cladocera, two important zooplankton groups across all major aquatic habitats. Most data were gathered from the literature, with the balance being provided by zooplankton ecologists. With the aim of more fully assessing zooplankton effects on elemental processes such as nitrogen (N), phosphorus (P) and carbon (C) stocks and fluxes in aquatic ecosystems, this data set provides information on the following traits: body size (length and mass), trophic group, elemental and biochemical corporal composition (N, P, C, lipid and protein content), respiration rates, N- and P-excretion rates, as well as stoichiometric ratios. Although relationships for zooplankton metabolism as a function of body mass or requirements have been explored in the past three decades, data have not been systematically compiled nor examined from an integrative and large-scale perspective across crustacean taxa and habitat types. While this contribution likely represents the most comprehensive assembly of traits for both marine and freshwater species, this data set is not exhaustive either. As a result, this compilation also identifies knowledge gaps: a fact that should encourage researchers to disclose information they may have to help complete such databases. This trait matrix is made available for the first time in this data paper; prior to its release, the data set has been analyzed in a meta-analysis published as a companion paper. This data set should prove extremely valuable for aquatic ecologists for trait-based characterization of plankton community structure as well as biogeochemical modeling. These data are also well-suited for deriving shortcut relationships that predict more difficult to measure trait values, most of which can be directly related to ecosystem properties (i.e., effect traits), from simpler traits (e

  7. Nutrient supply, surface currents, and plankton dynamics predict zooplankton hotspots in coastal upwelling systems

    NASA Astrophysics Data System (ADS)

    Messié, Monique; Chavez, Francisco P.

    2017-09-01

    A simple combination of wind-driven nutrient upwelling, surface currents, and plankton growth/grazing equations generates zooplankton patchiness and hotspots in coastal upwelling regions. Starting with an initial input of nitrate from coastal upwelling, growth and grazing equations evolve phytoplankton and zooplankton over time and space following surface currents. The model simulates the transition from coastal (large phytoplankton, e.g., diatoms) to offshore (picophytoplankton and microzooplankton) communities, and in between generates a large zooplankton maximum. The method was applied to four major upwelling systems (California, Peru, Northwest Africa, and Benguela) using latitudinal estimates of wind-driven nitrate supply and satellite-based surface currents. The resulting zooplankton simulations are patchy in nature; areas of high concentrations coincide with previously documented copepod and krill hotspots. The exercise highlights the importance of the upwelling process and surface currents in shaping plankton communities.

  8. Strategies of zooplanktivory shape the dynamics and diversity of littoral plankton communities: a mesocosm approach

    PubMed Central

    Helenius, Laura K; Aymà Padrós, Anna; Leskinen, Elina; Lehtonen, Hannu; Nurminen, Leena

    2015-01-01

    Planktivorous fish can exert strong top-down control on zooplankton communities. By incorporating different feeding strategies, from selective particulate feeding to cruising filter feeding, fish species target distinct prey. In this study, we investigated the effects of two species with different feeding strategies, the three-spined stickleback (Gasterosteus aculeatus (L.)) and roach (Rutilus rutilus (L.)), on a low-diversity brackish water zooplankton community using a 16-day mesocosm experiment. The experiment was conducted on a small-bodied spring zooplankton community in high-nutrient conditions, as well as a large-bodied summer community in low-nutrient conditions. Effects were highly dependent on the initial zooplankton community structure and hence seasonal variation. In a small-bodied community with high predation pressure and no dispersal or migration, the selective particulate-feeding stickleback depleted the zooplankton community and decreased its diversity more radically than the cruising filter-feeding roach. Cladocerans rather than copepods were efficiently removed by predation, and their removal caused altered patterns in rotifer abundance. In a large-bodied summer community with initial high taxonomic and functional diversity, predation pressure was lower and resource availability was high for omnivorous crustaceans preying on other zooplankton. In this community, predation maintained diversity, regardless of predator species. During both experimental periods, predation influenced the competitive relationship between the dominant calanoid copepods, and altered species composition and size structure of the zooplankton community. Changes also occurred to an extent at the level of nontarget prey, such as microzooplankton and rotifers, emphasizing the importance of subtle predation effects. We discuss our results in the context of the adaptive foraging mechanism and relate them to the natural littoral community. PMID:26045953

  9. Ecological and Evolutionary Effects of Stickleback on Community Structure

    PubMed Central

    Des Roches, Simone; Shurin, Jonathan B.; Schluter, Dolph; Harmon, Luke J.

    2013-01-01

    Species’ ecology and evolution can have strong effects on communities. Both may change concurrently when species colonize a new ecosystem. We know little, however, about the combined effects of ecological and evolutionary change on community structure. We simultaneously examined the effects of top-predator ecology and evolution on freshwater community parameters using recently evolved generalist and specialist ecotypes of three-spine stickleback (Gasterosteus aculeatus). We used a mesocosm experiment to directly examine the effects of ecological (fish presence and density) and evolutionary (phenotypic diversity and specialization) factors on community structure at lower trophic levels. We evaluated zooplankton biomass and composition, periphyton and phytoplankton chlorophyll-a concentration, and net primary production among treatments containing different densities and diversities of stickleback. Our results showed that both ecological and evolutionary differences in the top-predator affect different aspects of community structure and composition. Community structure, specifically the abundance of organisms at each trophic level, was affected by stickleback presence and density, whereas composition of zooplankton was influenced by stickleback diversity and specialization. Primary productivity, in terms of chlorophyll-a concentration and net primary production was affected by ecological but not evolutionary factors. Our results stress the importance of concurrently evaluating both changes in density and phenotypic diversity on the structure and composition of communities. PMID:23573203

  10. Zooplankton diel vertical migration and contribution to deep active carbon flux in the NW Mediterranean

    NASA Astrophysics Data System (ADS)

    Isla, Alejandro; Scharek, Renate; Latasa, Mikel

    2015-03-01

    The diel vertical migration (DVM) of zooplankton contributes to the biological pump transporting material from surface to deep waters. We examined the DVM of the zooplankton community in different size fractions (53-200 μm, 200-500 μm, 500-1000 μm, 1000-2000 μm and > 2000 μm) during three cruises carried out in the open NW Mediterranean Sea. We assessed their metabolic rates from empirical published relationships and estimated the active fluxes of dissolved carbon to the mesopelagic zone driven by migrant zooplankton. Within the predominantly oligotrophic Mediterranean Sea, the NW region is one of the most productive ones, with a seasonal cycle characterized by a prominent spring bloom. The study area was visited at three different phases of the seasonal cycle: during the spring bloom, the post-bloom, and strongly stratified oligotrophic conditions. We found seasonal differences in DVM, less evident during the bloom. Changes in DVM intensity were related to the composition of the zooplanktonic assemblage, which also varied between cruises. Euphausiids appeared as the most active migrants in all seasons, and their life cycle conditioned the observed pattern. Immature stages, which are unable to perform large diel vertical movements, dominated during the bloom, in contrast to the higher relative importance of migrating adults in the other two sampling periods. The amount of dissolved carbon exported was determined by the migrant zooplankton biomass, being highest during the post-bloom (2.2 mmol C respired m- 2 d- 1, and up to 3.1 mmol C exported m- 2 d- 1 when DOC release estimations are added). The active transport by diel migrants represented a substantial contribution to total carbon export to deep waters, especially under stratified oligotrophic conditions, revealing the importance of zooplankton in the biological pump operating in the study area.

  11. Zooplankton seasonality across a latitudinal gradient in the Northeast Atlantic Shelves Province

    NASA Astrophysics Data System (ADS)

    Fanjul, Alvaro; Iriarte, Arantza; Villate, Fernando; Uriarte, Ibon; Atkinson, Angus; Cook, Kathryn

    2018-05-01

    Zooplankton seasonality and its environmental drivers were studied at four coastal sites within the Northeast Atlantic Shelves Province (Bilbao35 (B35) and Urdaibai35 (U35) in the Bay of Biscay, Plymouth L4 (L4) in the English Channel and Stonehaven (SH) in the North Sea) using time series spanning 1999-2013. Seasonal community patterns were extracted at the level of broad zooplankton groups and copepod and cladoceran genera using redundancy analysis. Temperature was generally the environmental factor that explained most of the taxa seasonal variations at the four sites. However, between-site differences related to latitude and trophic status (i.e. from oligotrophic to mesotrophic) were observed in the seasonality of zooplankton community, mainly in the pattern of taxa that peaked in spring-summer as opposed to late autumn-winter zooplankton, which were linked primarily to differences in the seasonal pattern of phytoplankton. The percentage of taxa variations explained by environmental factors increased with latitude and trophic status likely related to the increase in the co-variation of temperature and chlorophyll a, as well as in the increase in regularity of the seasonal patterns of both temperature and chlorophyll a from south to north, and of chlorophyll a with trophic status. Cladocerans and cirripede larvae at B35 and U35, echinoderm larvae at L4 and decapod larvae at SH made the highest contribution to shape the main mode of seasonal pattern of zooplankton community, which showed a seasonal delay with latitude, as well as with the increase in trophic status.

  12. Effects of repeated exposure to 4-nonylphenol on the zooplankton community in littoral enclosures

    DOE Office of Scientific and Technical Information (OSTI.GOV)

    O`Halloran, S.L.; Liber, K.; Gangl, J.A.

    1999-03-01

    The effects of 4-nonylphenol (NP) on freshwater zooplankton were evaluated in 18 littoral enclosure mesocosms in northeastern Minnesota. The 18 enclosures were allocated to three blocks of six units with each block including two untreated control enclosures and one enclosure for each of four NP treatments. Treated enclosures received 11 applications of NP over a 20-d period between July 8 and 28, 1993. Maximum NP concentrations measured in the water column 2 h after each application averaged ({+-} SD) 5 {+-} 4, 23 {+-} 11, 76 {+-} 21, and 243 {+-} 41 {micro}g/L over the 11 applications. Nonylphenol dissipated rapidlymore » from the water column but was more persistent in sediments and in/on macrophytes. All cladoceran and copepod taxa were significantly reduced in abundance at 243 {+-} 41 {micro}g/L; some sensitive taxa were also affected by 76 {+-} 21 and 23 {+-} 11 {micro}g/L. While many rotifer taxa were unaffected at any of the test concentrations, several were affected at {ge} 76 {+-} 21 {micro}g/L. Ostracods were only affected at 2,243 {+-} 41 {micro}g/L. No zooplankton taxon was affected at 5 {+-} 4 {micro}g/L. The period of maximum impact usually occurred within 1 to 7 d of the last NP application, and recovery to control abundance levels generally occurred within 7 to 28 d of the last NP application. Two sensitive taxa, Acroperus and Calanoida, did not recover at {ge} 76 {+-} 21 {micro}g/L by the end of the study. The maximum acceptable toxicant concentration for protection of all zooplankton taxa was estimated at {approximately} 10 {micro}g/L, although overall community diversity was unaffected at 23 {+-} 11. The water was the most probable route of NP exposure, but the greater persistence of NP residues in/on macrophytes may have contributed to the lack of recovery of some macrophyte-associated taxa.« less

  13. Bridging the gap between marine biogeochemical and fisheries sciences; configuring the zooplankton link

    NASA Astrophysics Data System (ADS)

    Mitra, Aditee; Castellani, Claudia; Gentleman, Wendy C.; Jónasdóttir, Sigrún H.; Flynn, Kevin J.; Bode, Antonio; Halsband, Claudia; Kuhn, Penelope; Licandro, Priscilla; Agersted, Mette D.; Calbet, Albert; Lindeque, Penelope K.; Koppelmann, Rolf; Møller, Eva F.; Gislason, Astthor; Nielsen, Torkel Gissel; St. John, Michael

    2014-12-01

    Exploring climate and anthropogenic impacts on marine ecosystems requires an understanding of how trophic components interact. However, integrative end-to-end ecosystem studies (experimental and/or modelling) are rare. Experimental investigations often concentrate on a particular group or individual species within a trophic level, while tropho-dynamic field studies typically employ either a bottom-up approach concentrating on the phytoplankton community or a top-down approach concentrating on the fish community. Likewise the emphasis within modelling studies is usually placed upon phytoplankton-dominated biogeochemistry or on aspects of fisheries regulation. In consequence the roles of zooplankton communities (protists and metazoans) linking phytoplankton and fish communities are typically under-represented if not (especially in fisheries models) ignored. Where represented in ecosystem models, zooplankton are usually incorporated in an extremely simplistic fashion, using empirical descriptions merging various interacting physiological functions governing zooplankton growth and development, and thence ignoring physiological feedback mechanisms. Here we demonstrate, within a modelled plankton food-web system, how trophic dynamics are sensitive to small changes in parameter values describing zooplankton vital rates and thus the importance of using appropriate zooplankton descriptors. Through a comprehensive review, we reveal the mismatch between empirical understanding and modelling activities identifying important issues that warrant further experimental and modelling investigation. These include: food selectivity, kinetics of prey consumption and interactions with assimilation and growth, form of voided material, mortality rates at different age-stages relative to prior nutrient history. In particular there is a need for dynamic data series in which predator and prey of known nutrient history are studied interacting under varied pH and temperature regimes.

  14. Roles of predation, food, and temperature in structuring the epilimnetic zooplankton populations in Lake Ontario, 1981-1986

    USGS Publications Warehouse

    Johannsson, Ora E.; O'Gorman, Robert

    1991-01-01

    We sampled phytoplankton, zooplankton, and alewives Alosa pseudoharengus and measured water temperature in Lake Ontario during 1981–1986. Through the use of general linear regression models we then sought evidence of control of the eplimnetic zooplankton community (mid-July to mid-October) by producers, consumers, and temperature. Our measures of the zooplankton community were total biomass, cladoceran biomass, and the ratio of large to small Daphnia spp. (D. galeata mendotae andD. retrocurva). Zooplankton population variables assessed were abundance, egg ratio, and productivity. Through factor analysis, factors were created from the standardized, transformed independent variables for use in the regression analyses. Regression models showed significant inverse relationships (P < 0.05) between alewives and Bosmina longirostris (abundance, production, and egg ratio), Ceriodaphnia lacustris (egg ratio), andDaphnia retrocurva (egg ratio). Bosmina longirostris and D. retrocurva egg ratios were inversely related to algae biomass (<20 μm), thus the smaller algae might be controlled in part by the zooplankton community. Production of C. lacustris was directly related to temperature, as was the production and abundance of Tropocyclops prasinus. The annual size-frequency distributions of B. longirostris and D. retrocurva were inversely related to yearling alewife abundance and directly related to adult alewife abundance, which suggested that yearlings use a particulate-feeding mode on these zooplankton species more frequently than adults. We found no significant negative correlations among the zooplankton species, which suggested that interzooplankton predation and competition were not as important in structuring the community as were planktivory and temperature.

  15. Deep-water zooplankton of the Guaymas basin hydrothermal vent field

    NASA Astrophysics Data System (ADS)

    Wiebe, Peter H.; Copley, Nancy; Van Dover, Cindy; Tamse, Armando; Manrique, Fernando

    1988-06-01

    Zooplankton from the Guaymas Basin deep-sea vent field were collected with a 1 m 2 MOCNESS to examine the distribution of total standing stock, taxonomic composition, size-frequency distribution of zooplankton, and the species composition of calanoid copepods. Low altitude (˜ 100 m above the bottom) horizontal tows along and across the axis of the basin's southern trough, and oblique tows from the bottom of the basin (˜ 2000 m) to the surface were made. Total biomass in near-bottom samples (range: 13-46 cc/1000 m 3) was only about a factor of 10 lower than in the upper 100 m. However, there was little or no evidence for enrichment of biomass in the ˜ 100 m zone above the vent site relative to biomass at the same depth horizon over non-vent areas. Total numbers of individuals ranged between 2600 and 4800/1000 m 3. Calanoid copepods consistently ranked first in abundance of counts of the taxa, followed by cyclopoid copepods, ostracods, chaetognaths, and amphipods. Other less abundant taxa, but in some cases important contributors to total biomass, were coelenterates (siphonophores, medusae), decapod shrimp, and polychaetes. Size-frequency analysis of individuals from each taxon indicated that the biomass and abundance spectra do not fit the theoretically expected spectra based on weight-dependent metabolism and growth. The pyramid of biomass was substantially different from the pyramid of numbers in this deep-sea community. Of the 67 species of copepods identified in two samples taken on low altitude tows, only 15 co-occurred in both samples. Many of the species in this relatively diverse community remain to be described. Larval and post-larval forms of benthic clams, gastropods, polychaetes, and crustaceans associated with the vents were collected 100-200 m above the southern trough, indicating the post-larvae may play an active role in dispersal of hydrothermal vent species.

  16. Eco-evolutionary dynamics in urbanized landscapes: evolution, species sorting and the change in zooplankton body size along urbanization gradients.

    PubMed

    Brans, Kristien I; Govaert, Lynn; Engelen, Jessie M T; Gianuca, Andros T; Souffreau, Caroline; De Meester, Luc

    2017-01-19

    Urbanization causes both changes in community composition and evolutionary responses, but most studies focus on these responses in isolation. We performed an integrated analysis assessing the relative contribution of intra- and interspecific trait turnover to the observed change in zooplankton community body size in 83 cladoceran communities along urbanization gradients quantified at seven spatial scales (50-3200 m radii). We also performed a quantitative genetic analysis on 12 Daphnia magna populations along the same urbanization gradient. Body size in zooplankton communities generally declined with increasing urbanization, but the opposite was observed for communities dominated by large species. The contribution of intraspecific trait variation to community body size turnover with urbanization strongly varied with the spatial scale considered, and was highest for communities dominated by large cladoceran species and at intermediate spatial scales. Genotypic size at maturity was smaller for urban than for rural D. magna populations and for animals cultured at 24°C compared with 20°C. While local genetic adaptation likely contributed to the persistence of D. magna in the urban heat islands, buffering for the phenotypic shift to larger body sizes with increasing urbanization, community body size turnover was mainly driven by non-genetic intraspecific trait change.This article is part of the themed issue 'Human influences on evolution, and the ecological and societal consequences'. © 2016 The Author(s).

  17. Eco-evolutionary dynamics in urbanized landscapes: evolution, species sorting and the change in zooplankton body size along urbanization gradients

    PubMed Central

    Souffreau, Caroline

    2017-01-01

    Urbanization causes both changes in community composition and evolutionary responses, but most studies focus on these responses in isolation. We performed an integrated analysis assessing the relative contribution of intra- and interspecific trait turnover to the observed change in zooplankton community body size in 83 cladoceran communities along urbanization gradients quantified at seven spatial scales (50–3200 m radii). We also performed a quantitative genetic analysis on 12 Daphnia magna populations along the same urbanization gradient. Body size in zooplankton communities generally declined with increasing urbanization, but the opposite was observed for communities dominated by large species. The contribution of intraspecific trait variation to community body size turnover with urbanization strongly varied with the spatial scale considered, and was highest for communities dominated by large cladoceran species and at intermediate spatial scales. Genotypic size at maturity was smaller for urban than for rural D. magna populations and for animals cultured at 24°C compared with 20°C. While local genetic adaptation likely contributed to the persistence of D. magna in the urban heat islands, buffering for the phenotypic shift to larger body sizes with increasing urbanization, community body size turnover was mainly driven by non-genetic intraspecific trait change. This article is part of the themed issue ‘Human influences on evolution, and the ecological and societal consequences’. PMID:27920375

  18. Factors driving the seasonal distribution of zooplankton in a eutrophicated Mediterranean Lagoon.

    PubMed

    Ziadi, Boutheina; Dhib, Amel; Turki, Souad; Aleya, Lotfi

    2015-08-15

    The distribution of the zooplankton community was studied along with environmental factors at five sampling stations in Ghar El Melh Lagoon (GML) (Mediterranean Sea, northern Tunisia). GML is characterized by specific following properties: broad and shallow, freshwater supply (Station 1); connection to the sea (S2); stagnation (S3 especially), and eutrophic conditions with enhanced nutrient concentrations (S4 and S5). Samples were taken twice monthly from February 2011 to January 2012. Twenty-three zooplankton groups comprising 10 larval stages were identified. Zooplankton assemblages were largely dominated by copepods (37.25%), followed respectively by ciliates (21.09%), bivalve larvae (14.88%) and gastropod veligers (12.53%). Redundancy analysis indicated that while no significant difference was found in the distribution of zooplankton at any station, a strong difference was observed according to season. Both temporal and physicochemical fluctuations explain more than 50% of changes in zooplankton abundances. Copyright © 2015 Elsevier Ltd. All rights reserved.

  19. Modeling the effects of free-living marine bacterial community composition on heterotrophic remineralization rates and biogeochemical carbon cycling

    NASA Astrophysics Data System (ADS)

    Teel, E.; Liu, X.; Cram, J. A.; Sachdeva, R.; Fuhrman, J. A.; Levine, N. M.

    2016-12-01

    Global oceanic ecosystem models either disregard fluctuations in heterotrophic bacterial remineralization or vary remineralization as a simple function of temperature, available carbon, and nutrient limitation. Most of these models were developed before molecular techniques allowed for the description of microbial community composition and functional diversity. Here we investigate the impact of a dynamic heterotrophic community and variable remineralization rates on biogeochemical cycling. Specifically, we integrated variable microbial remineralization into an ecosystem model by utilizing molecular community composition data, association network analysis, and biogeochemical rate data from the San Pedro Ocean Time-series (SPOT) station. Fluctuations in free-living bacterial community function and composition were examined using monthly environmental and biological data collected at SPOT between 2000 and 2011. On average, the bacterial community showed predictable seasonal changes in community composition and peaked in abundance in the spring with a one-month lag from peak chlorophyll concentrations. Bacterial growth efficiency (BGE), estimated from bacterial production, was found to vary widely at the site (5% to 40%). In a multivariate analysis, 47.6% of BGE variability was predicted using primary production, bacterial community composition, and temperature. A classic Nutrient-Phytoplankton-Zooplankton-Detritus model was expanded to include a heterotroph module that captured the observed relationships at the SPOT site. Results show that the inclusion of dynamic bacterial remineralization into larger oceanic ecosystem models can significantly impact microzooplankton grazing, the duration of surface phytoplankton blooms, and picophytoplankton primary production rates.

  20. The impact of different hydrographic conditions and zooplankton communities on provisioning Little Auks along the West coast of Spitsbergen

    NASA Astrophysics Data System (ADS)

    Kwasniewski, Slawomir; Gluchowska, Marta; Jakubas, Dariusz; Wojczulanis-Jakubas, Katarzyna; Walkusz, Wojciech; Karnovsky, Nina; Blachowiak-Samolyk, Katarzyna; Cisek, Malgorzata; Stempniewicz, Lech

    2010-10-01

    Composition and abundance of zooplankton were studied simultaneously with feeding ecology of planktivorous Little Auks ( Alle alle) in two different sea shelf areas of West Spitsbergen, Norway, in summer 2007. Zooplankton was collected adjacent to bird colonies in Magdalenefjorden (influenced by Atlantic West Spitsbergen Current) and Hornsund (dominated by the Arctic Sørkapp Current). In spite of different hydrological situations, the abundance of prey preferred by Little Auks, Arctic Calanus glacialis copepodids stage V, among zooplankton was similar in both localities. However, there was much more of Atlantic Calanus finmarchicus on the shelf outside Magdalenefjorden compared to Hornsund, resulting in different abundance ratios of Arctic to Atlantic copepods in the two areas (1:14 and 1:1, respectively). Even greater differences between the two areas occurred in the ratio of C. glacialis CV to other zooplankters, amounting to 1:40 in Magdalenefjorden and 1:6 in Hornsund. In both Little Auk colonies food brought by parents to their chicks contained mainly C. glacialis CV, albeit the proportion of this copepod in meals was significantly higher in Hornsund. Meals delivered to Little Auk chicks in Hornsund had also higher zooplankton numbers, biomass and energy content. In Magdalenefjorden, on the other hand, a higher number of feedings and longer duration of foraging trips were recorded. These differences became more apparent with increasing energy requirements of the fast growing nestlings. This was probably a consequence of lower relative abundance of the Little Auks’ preferred prey in the sea adjacent to Magdalenefjorden colony. It seems that searching for the preferred food items, such as C. glacialis, among abundant but less favored C. finmarchicus, may require more time and energy demanding foraging behavior. As a consequence, foraging effort of the Little Auk parents from Magdalenefjorden was higher, and feeding efficiency lower, than those of birds from

  1. Bioavailability and uptake of smelter emissions in freshwater zooplankton in northeastern Washington, USA lakes using Pb isotope analysis and trace metal concentrations.

    PubMed

    Child, A W; Moore, B C; Vervoort, J D; Beutel, M W

    2018-07-01

    The upper Columbia River and associated valley systems are highly contaminated with metal wastes from nearby smelting operations in Trail, British Columbia, Canada (Teck smelter), and to a lesser extent, Northport, Washington, USA (Le Roi smelter). Previous studies have investigated depositional patterns of airborne emissions from these smelters, and documented the Teck smelter as the primary metal contamination source. However, there is limited research directed at whether these contaminants are bioavailable to aquatic organisms. This study investigates whether smelter derived contaminants are bioavailable to freshwater zooplankton. Trace metal (Zn, Cd, As, Sb, Pb and Hg) concentrations and Pb isotope compositions of zooplankton and sediment were measured in lakes ranging from 17 to 144 km downwind of the Teck smelter. Pb isotopic compositions of historic ores used by both smelters are uniquely less radiogenic than local geologic formations, so when zooplankton assimilate substantial amounts of smelter derived metals their compositions deviate from local baseline compositions toward ore compositions. Sediment metal concentrations and Pb isotope compositions in sediment follow significant (p < 0.001) negative exponential and sigmoidal patterns, respectively, as distance from the Teck smelting operation increases. Zooplankton As, Cd, and Sb contents were related to distance from the Teck smelter (p < 0.05), and zooplankton Pb isotope compositions suggest As, Cd, Sb and Pb from historic and current smelter emissions are biologically available to zooplankton. Zooplankton from lakes within 86 km of the Teck facility display isotopic evidence that legacy ore pollution is biologically available for assimilation. However, without water column data our study is unable to determine if legacy contaminants are remobilized from lake sediments, or erosional pathways from the watershed. Copyright © 2018 Elsevier Ltd. All rights reserved.

  2. Does salinity change determine zooplankton variability in the saline Qarun Lake (Egypt)?

    NASA Astrophysics Data System (ADS)

    El-Shabrawy, Gamal M.; Anufriieva, Elena V.; Germoush, Mousa O.; Goher, Mohamed E.; Shadrin, Nickolai V.

    2015-11-01

    Zooplankton and 14 abiotic variables were studied during August 2011 at 10 stations in Lake Qarun, Egypt. Stations with the lowest salinity and highest nutrient concentrations and turbidity were close to the discharge of waters from the El-Bats and El-Wadi drainage systems. A total of 15 holozooplankton species were identified. The salinity in Lake Qarun increased and fluctuated since 1901: 12 g/L in 1901; 8.5 g/L in 1905; 12.0 g/L in 1922; 30.0 g/L in 1985; 38.7 g/L in 1994; 35.3 g/L in 2006, and 33.4 g/L in 2011. The mean concentration of nutrients (nitrate, nitrite and orthophosphate) gradually increased from 35, 0.16 and 0.38 µg/L, respectively, in 1953-1955 to 113, 16.4, and 30.26 µg/L in 2011. From 1999-2003 some decrease of species diversity occurred. Average total zooplankton density was 30 000 ind./m3 in 1974-1977; 356 125 ind./m3 in 1989; 534 000 ind./m3 in 1994-1995; from 965 000 to 1 452 000 ind./m3 in 2006, and 595 000 ind./m3 in 2011. A range of long-term summer salinity variability during the last decades was very similar to a range of salinity spatial variability in summer 2011. There is no significant correlation between zooplankton abundance and salinity in spatial and long-term changes. We conclude that salinity fluctuations since at least 1955 did not directly drive the changes of composition and abundance of zooplankton in the lake. A marine community had formed in the lake, and it continues to change. One of the main drivers of this change is a regular introduction and a pressure of alien species on the existent community. Eutrophication also plays an important role. The introduction of Mnemiopsis leidyi, first reported in 2014, may lead to a start of a new stage of the biotic changes in Lake Qarun, when eutrophication and the population dynamics of this ctenophore will be main drivers of the ecosystem change.

  3. Changes of concentrations and possibility of accumulation of bisphenol A and alkylphenols, depending on biomass and composition, in zooplankton of the Southern Baltic (Gulf of Gdansk).

    PubMed

    Staniszewska, Marta; Nehring, Iga; Mudrak-Cegiołka, Stella

    2016-06-01

    The focus of the present study was to find the relationship between concentrations of bisphenol A (BPA), 4-tert-octylphenol (OP) and 4-nonylphenol (NP) in zooplankton and seasonal changes in the composition and biomass of particular zooplankton taxa in the Gulf of Gdansk (Southern Baltic) in the years 2011-2012. Assays of BPA, OP and NP in water and zooplankton samples were performed using the HPLC/FL system. High mean concentrations of the studied compounds, determined in spring (405.9 (BPA); 25.7 (OP); 111.2 (NP) ng g(-1) dw), can be linked to the high proportion of meroplankton in that season. Rotifera also had an influence on the rise in concentrations of the studied compounds but to a lesser degree, while the lowest concentrations (determined in summer) can be associated with the high participation of Copepoda and Cladocera in zooplankton biomass. It was also observed that juvenile forms can be more susceptible to accumulating endocrine disrupting compounds (EDCs). This is indicated by the positive correlation between BPA concentration in zooplankton and the proportion of Copepoda nauplii biomass in spring (r = 0.90; p < 0.05). In most cases, greater zooplankton biomass accumulated higher concentrations and loads of the studied compounds. With biomass growth (to 123.32 μg m(-3)), the bioconcentration factor also rose (to max 46.1·10(3)), demonstrating that unlike typical hydrophobic compounds the studied EDCs do not become "diluted" in zooplankton biomass. The highest BPA concentrations from all compounds may be connected with anthropogenic sources located in the coastal zone. Copyright © 2016 Elsevier Ltd. All rights reserved.

  4. Stable carbon isotopes of zooplankton lipid components as a tool to differentiate between pelagic and ice algae as a food source for zooplankton in the Arctic Ocean

    NASA Astrophysics Data System (ADS)

    Bendle, J. A.; Moossen, H.; Jamieson, R.; Wold, A.; Falk-Peterson, S.

    2009-12-01

    Every summer in the Arctic, the ice cover melts and releases sea-ice algae into the surrounding waters. How important are these algae, consisting mostly of diatoms, as a major food source for zooplankton and higher trophic levels? The answer to this question is timely, given predictions for the loss of summer sea ice cover this century. We are investigating the use of compound specific carbon isotopes as a tool to differentiate between lipids found in zooplankton which feed on diatoms living in the open ocean and zooplankton which feed on diatoms derived from the ice. To this effect we analyse the carbon isotopic signature of the major fatty acids and alcohols and that of the major sterols collected during the Arctic ICE CHASER expedition aboard the RRV James Clark Ross in 2008. Twenty three zooplankton samples comprised of 11 different species were collected in four different depth intervals at three different sites around Svalbard. The sites had variable ice cover, from open water to solid ice. We analysed the lipid composition of the zooplankton samples with special emphasis on the fatty acids and fatty alcohols bound as esters. Esters are produced by zooplankton to function as an energy reservoir. Initial results such as the occurrence of Brassicasterol, 24 methylencholest 5 en-3β-ol and Desmosterol, high amounts of the C20:5ω3 fatty acid and high C16:1ω7/C16:0-fatty acid ratios suggest that diatoms are an important part of the zooplankton diet.

  5. Selenium in San Francisco Bay zooplankton: Potential effects of hydrodynamics and food web interactions

    USGS Publications Warehouse

    Purkerson, D.G.; Doblin, M.A.; Bollens, S.M.; Luoma, S.N.; Cutter, G.A.

    2003-01-01

    The potential toxicity of elevated selenium (Se) concentrations in aquatic ecosystems has stimulated efforts to measure Se concentrations in benthos, nekton, and waterfowl in San Francisco Bay (SF Bay). In September 1998, we initiated a 14 mo field study to determine the concentration of Se in SF Bay zooplankton, which play a major role in the Bay food web, but which have not previously been studied with respect to Se. Monthly vertical plankton tows were collected at several stations throughout SF Bay, and zooplankton were separated into two operationally defined size classes for Se analyses: 73-2,000 ??m, and ???2,000 ??m. Selenium values ranged 1.02-6.07 ??g Se g-1 dry weight. No spatial differences in zooplankton Se concentrations were found. However, there were inter- and intra-annual differences. Zooplankton Se concentrations were enriched in the North Bay in Fall 1999 when compared to other seasons and locations within and outside SF Bay. The abundance and biovolume of the zooplankton community varied spatially between stations, but not seasonally within each station. Smaller herbivorous-omnivorous zooplankton had higher Se concentrations than larger omnivorous-carnivorous zooplankton. Selenium concentrations in zooplankton were negatively correlated with the proportion of total copepod biovolume comprising the large carnivorous copepod Tortanus dextrilobatus, but positively correlated with the proportion of copepod biovolume comprising smaller copepods of the family Oithonidae, suggesting an important role of trophic level and size in regulating zooplankton Se concentrations.

  6. PSP toxin levels and plankton community composition and abundance in size-fractionated vertical profiles during spring/summer blooms of the toxic dinoflagellate Alexandrium fundyense in the Gulf of Maine and on Georges Bank, 2007, 2008, and 2010: 2. Plankton community composition and abundance.

    PubMed

    Petitpas, Christian M; Turner, Jefferson T; Deeds, Jonathan R; Keafer, Bruce A; McGillicuddy, Dennis J; Milligan, Peter J; Shue, Vangie; White, Kevin D; Anderson, Donald M

    2014-05-01

    As part of the Gulf of Maine Toxicity (GOMTOX) project, we determined Alexandrium fundyense abundance, paralytic shellfish poisoning (PSP) toxin levels in various plankton size fractions, and the community composition of potential grazers of A. fundyense in plankton size fractions during blooms of this toxic dinoflagellate in the coastal Gulf of Maine and on Georges Bank in spring and summer of 2007, 2008, and 2010. PSP toxins and A. fundyense cells were found throughout the sampled water column (down to 50 m) in the 20-64 μm size fractions. While PSP toxins were widespread throughout all size classes of the zooplankton grazing community, the majority of the toxin was measured in the 20-64 μm size fraction. A. fundyense cellular toxin content estimated from field samples was significantly higher in the coastal Gulf of Maine than on Georges Bank. Most samples containing PSP toxins in the present study had diverse assemblages of grazers. However, some samples clearly suggested PSP toxin accumulation in several different grazer taxa including tintinnids, heterotrophic dinoflagellates of the genus Protoperidinium , barnacle nauplii, the harpacticoid copepod Microsetella norvegica , the calanoid copepods Calanus finmarchicus and Pseudocalanus spp., the marine cladoceran Evadne nordmanni , and hydroids of the genus Clytia . Thus, a diverse assemblage of zooplankton grazers accumulated PSP toxins through food-web interactions. This raises the question of whether PSP toxins pose a potential human health risk not only from nearshore bivalve shellfish, but also potentially from fish and other upper-level consumers in zooplankton-based pelagic food webs.

  7. Effects of increased zooplankton biomass on phytoplankton and cyanotoxins: A tropical mesocosm study.

    PubMed

    Dos Santos Severiano, Juliana; Dos Santos Almeida-Melo, Viviane Lúcia; Bittencourt-Oliveira, Maria do Carmo; Chia, Mathias Ahii; do Nascimento Moura, Ariadne

    2018-01-01

    Zooplankton are important biocontrol agents for algal blooms in temperate lakes, while their potential in tropical and subtropical environments is not well understood. The aim of the present study was to evaluate the influence of increased zooplankton biomass on phytoplankton community and cyanotoxins (microcystins and saxitoxin) content of a tropical reservoir (Ipojuca reservoir, Brazil) using in situ mesocosms. Mesocosms consisted of 50L transparent polyethylene bags suspended in the reservoir for twelve days. Phytoplankton populations were exposed to treatments having 1 (control), 2, 3 and 4 times the biomass of zooplankton found in the reservoir at the beginning of the experiment. Filamentous cyanobacteria such as Planktothrix agardhii and Cylindrospermopsis raciborskii were not negatively influenced by increasing zooplankton biomass. In contrast, the treatments with 3 and 4 times zooplankton biomass negatively affected the cyanobacteria Aphanocapsa sp., Chroococcus sp., Dolichospermum sp., Merismopedia tenuissima, Microcystis aeruginosa and Pseudanabaena sp.; the diatom Cyclotella meneghiniana; and the cryptophyte Cryptomonas sp. Total microcystin concentration both increased and decreased at different times depending on zooplankton treatment, while saxitoxin level was not significantly different between the treatments and control. The results of the present study suggest that zooplankton biomass can be manipulated to control the excessive proliferation of non-filamentous bloom forming cyanobacteria (e.g. M. aeruginosa) and their associated cyanotoxins. Copyright © 2017 Elsevier B.V. All rights reserved.

  8. The Impact of Fish Predation and Cyanobacteria on Zooplankton Size Structure in 96 Subtropical Lakes

    PubMed Central

    Zhang, Jing; Xie, Ping; Tao, Min; Guo, Longgen; Chen, Jun; Li, Li; XueZhen Zhang; Zhang, Lu

    2013-01-01

    Zooplankton are relatively small in size in the subtropical regions. This characteristic has been attributed to intense predation pressure, high nutrient loading and cyanobacterial biomass. To provide further information on the effect of predation and cyanobacteria on zooplankton size structure, we analyzed data from 96 shallow aquaculture lakes along the Yangtze River. Contrary to former studies, both principal components analysis and multiple regression analysis showed that the mean zooplankton size was positively related to fish yield. The studied lakes were grouped into three types, namely, natural fishing lakes with low nutrient loading (Type1), planktivorous fish-dominated lakes (Type 2), and eutrophic lakes with high cyanobacterial biomass (Type 3). A marked difference in zooplankton size structure was found among these groups. The greatest mean zooplankton size was observed in Type 2 lakes, but zooplankton density was the lowest. Zooplankton abundance was highest in Type 3 lakes and increased with increasing cyanobacterial biomass. Zooplankton mean size was negatively correlated with cyanobacterial biomass. No obvious trends were found in Type 1 lakes. These results were reflected by the normalized biomass size spectrum, which showed a unimodal shape with a peak at medium sizes in Type 2 lakes and a peak at small sizes in Type 3 lakes. These results indicated a relative increase in medium-sized and small-sized species in Types 2 and 3 lakes, respectively. Our results suggested that fish predation might have a negative effect on zooplankton abundance but a positive effect on zooplankton size structure. High cyanobacterial biomass most likely caused a decline in the zooplankton size and encouraged the proliferation of small zooplankton. We suggest that both planktivorous fish and cyanobacteria have substantial effects on the shaping of zooplankton community, particularly in the lakes in the eastern plain along the Yangtze River where aquaculture is widespread

  9. The impact of fish predation and cyanobacteria on zooplankton size structure in 96 subtropical lakes.

    PubMed

    Zhang, Jing; Xie, Ping; Tao, Min; Guo, Longgen; Chen, Jun; Li, Li; Xuezhen Zhang; Zhang, Lu

    2013-01-01

    Zooplankton are relatively small in size in the subtropical regions. This characteristic has been attributed to intense predation pressure, high nutrient loading and cyanobacterial biomass. To provide further information on the effect of predation and cyanobacteria on zooplankton size structure, we analyzed data from 96 shallow aquaculture lakes along the Yangtze River. Contrary to former studies, both principal components analysis and multiple regression analysis showed that the mean zooplankton size was positively related to fish yield. The studied lakes were grouped into three types, namely, natural fishing lakes with low nutrient loading (Type1), planktivorous fish-dominated lakes (Type 2), and eutrophic lakes with high cyanobacterial biomass (Type 3). A marked difference in zooplankton size structure was found among these groups. The greatest mean zooplankton size was observed in Type 2 lakes, but zooplankton density was the lowest. Zooplankton abundance was highest in Type 3 lakes and increased with increasing cyanobacterial biomass. Zooplankton mean size was negatively correlated with cyanobacterial biomass. No obvious trends were found in Type 1 lakes. These results were reflected by the normalized biomass size spectrum, which showed a unimodal shape with a peak at medium sizes in Type 2 lakes and a peak at small sizes in Type 3 lakes. These results indicated a relative increase in medium-sized and small-sized species in Types 2 and 3 lakes, respectively. Our results suggested that fish predation might have a negative effect on zooplankton abundance but a positive effect on zooplankton size structure. High cyanobacterial biomass most likely caused a decline in the zooplankton size and encouraged the proliferation of small zooplankton. We suggest that both planktivorous fish and cyanobacteria have substantial effects on the shaping of zooplankton community, particularly in the lakes in the eastern plain along the Yangtze River where aquaculture is widespread

  10. Retention and characteristics of microplastics in natural zooplankton taxa from the East China Sea.

    PubMed

    Sun, Xiaoxia; Liu, Tao; Zhu, Mingliang; Liang, Junhua; Zhao, Yongfang; Zhang, Bo

    2018-05-30

    The ubiquitous presence and persistence of microplastics (MPs) in aquatic environments have become of particular concern in recent years. Biological interactions are among the key processes that affect the impact and fate of MPs in the oceans. Zooplankton is one of the most sensitive taxa because their prey is approximately the same size as MPs. However, the status of MPs in zooplankton within natural marine environments remains largely unknown. By focusing on zooplankton in the East China Sea, the characteristics, bioaccumulated concentration, and retention of MPs for 10 zooplankton groups were systematically studied. Three types of MPs were found in zooplankton: fibres, pellets, and fragments. The fibres (54.6%) were more common than the other two types. The average lengths of the fibres, pellets, and fragments were 295.2 ± 348.6 μm, 20.3 ± 11.0 μm, and 82.4 ± 80.5 μm, respectively. Nineteen polymers were detected in the zooplankton via the Thermo Scientific Nicolet iN10 Infrared Microscope. Polymerized oxidized organic material and polyester were dominant, accounting for 35.9% and 25.6% of the polymers, respectively. The bioaccumulated concentration of MPs in the 10 zooplankton taxa varied from 0.13 pieces/zooplankton for Copepoda to 0.35 pieces/zooplankton for Pteropoda. The bioaccumulated concentration was negatively correlated with the abundance of zooplankton, showing a significant biological dilution effect. The bioaccumulated concentration was also influenced by the feeding mode of zooplankton, showing a trend of omnivorous > carnivorous > herbivorous. High retention of MPs was found in the zooplankton community of the East China Sea, achieving 19.7 ± 22.4 pieces/m 3 . This is much higher than the MP retention in zooplankton from other reported sea areas. By revealing the characteristics and retention of MPs in the natural zooplankton taxa from the East China Sea, this research identified the influence that MPs have

  11. Emergent Macrophytes Support Zooplankton in a Shallow Tropical Lake: A Basis for Wetland Conservation

    NASA Astrophysics Data System (ADS)

    Gebrehiwot, Mesfin; Kifle, Demeke; Triest, Ludwig

    2017-12-01

    Understanding the biodiversity value of littoral zones of lakes is a priority for aquatic biodiversity conservation. However, less emphasis has been given to the littoral part of tropical African lakes, with many of the previous researches focusing only on the open water side. The aim of the present study was, therefore, to investigate the impact of the littoral zone of a shallow freshwater tropical lake (Ziway, Ethiopia), dominated by two emergent macrophytes, on zooplankton community structure. We hypothesized that the wetland vegetation serves as a preferred microhabitat for zooplankton communities. A lake with substantial coverage of emergent macrophytes was monitored monthly from January to August, 2016. The monitoring included the measurements of physical, chemical, and biological parameters. Sampling sites were selected to represent areas of the macrophyte vegetation ( Typha latifolia and Phragmites australis) and the open water part of the lake. Sites with macrophyte vegetation were found to be the home of more dense and diverse zooplankton community. However, during the period of high vegetation loss, the density of crustacean zooplankton showed significant reduction within the patches of macrophytes. From biodiversity conservation perspective, it was concluded that the preservation of such small areas of macrophytes covering the littoral zone of lakes could be as important as protecting the whole lake. However, the rapid degradation of wetland vegetation by human activities is a real threat to the lake ecosystem. In the not-too-far future, it could displace and evict riparian vegetation and the biota it supports.

  12. The effects of juvenile American shad planktivory on zooplankton production in Columbia River food webs

    USGS Publications Warehouse

    Haskell, Craig A.; Tiffan, Kenneth F.; Rondorf, Dennis W.

    2013-01-01

    Columbia River reservoirs support a large population of nonnative American Shad Alosa sapidissima that consume the zooplankton that native fishes also rely on. We hypothesized that the unprecedented biomass of juvenile American Shad in John Day Reservoir is capable of altering the zooplankton community if these fish consume a large portion of the zooplankton production. We derived taxon-specific estimates of zooplankton production using field data and a production model from the literature. Empirical daily ration was estimated for American Shad and expanded to population-level consumption using abundance and biomass data from hydroacoustic surveys. Daphnia spp. production was high in early summer but declined to near zero by September as shad abundance increased. American Shad sequentially consumed Daphnia spp., copepods, and Bosmina spp., which tracked the production trends of these taxa. American Shad evacuation rates ranged from 0.09 to 0.24/h, and daily rations ranged from 0.008 to 0.045 g·g−1·d−1 (dry weight) over all years. We observed peak American Shad biomass (45.2 kg/ha) in 1994, and daily consumption (1.6 kg/ha) approached 30% (5.3 kg/ha) of zooplankton production. On average, American Shad consumed 23.6% of the available zooplankton production (range, <1–83%). The changes in the zooplankton community are consistent with a top-down effect of planktivory by American Shad associated with their unprecedented biomass and consumption, but the effects are likely constrained by temperature, nutrient flux, and the seasonal production patterns of zooplankton in John Day Reservoir. American Shad add to the planktivory exerted by other species like Neomysis mercedis to reduce the capacity of the reservoir to support other planktivorous fishes. The introduction of American Shad and other nonnative species will continue to alter the food web in John Day Reservoir, potentially affecting native fishes, including Pacific salmon Oncorhynchus spp.

  13. [Effects of environmental factors on β diversity of zooplankton community in thermal discharge seawaters near Guohua Power Plant in Xiangshan Bay, Zhejiang, China].

    PubMed

    Zhu, Yi-feng; Dai, Mei-xia; Zhou, Xiao-hong; Lin, Xia; Mao, Shuo-qian; Yan, Xiao-jun

    2015-08-01

    Zooplankton samples were seasonally collected at 10 stations in thermal discharge seawaters near Guohua Power Plant in Xiangshan Bay. The abundance data from these samples were pooled and further combined with field environmental factors, then generalised dissimilarity modelling (GDM) was used to explore the effects of environmental factors on β diversity of zooplankton community. The results showed that altogether 95 species of zooplankton belonging to 14 taxa were found. In these taxa, small zooplankton with 62.6% of abundance was the main taxa, while copepods dominated in adult groups, which abundance accounted for 35.3%. According to Whittaker's definition and additive partition, a diversity accounted for 36.3% and β diversity 63.7%. Environmental factors explained 43.8% of β diversity, and geographical distance between sampling sites had no effect on β diversity. However, there were still 19.9% of β diversity remained to be explained. After GDM fitting, there were nine environmental variables affecting zooplankton β diversity and explaining 68.8% of β diversity. The variables contributing to β diversity from high to low were seasonal water temperature, dissolved oxygen, seawater temperature increment, conductivity, suspended particulate matter, salinity, transparency, water depth and redox potential, respectively. Seasonal water temperature, dissolved oxygen and seawater temperature increment were the most important factors for driving β diversity changes, and accounted for 23.9%, 13.7% and 9.7% of absolute contribution to the interpretable portion of the β diversity, respectively. When seasonal water temperature, dissolved oxygen and seawater temperature increment were below 25 °C, greater than 5 mg · L(-1) and over 1 °C, respectively, β diversity rapidly increased with the increasing variable gradients. Furthermore, other predictors had little effect on β diversity.

  14. Regional zooplankton dispersal provides spatial insurance for ecosystem function.

    PubMed

    Symons, Celia C; Arnott, Shelley E

    2013-05-01

    Changing environmental conditions are affecting diversity and ecosystem function globally. Theory suggests that dispersal from a regional species pool may buffer against changes in local community diversity and ecosystem function after a disturbance through the establishment of functionally redundant tolerant species. The spatial insurance provided by dispersal may decrease through time after environmental change as the local community monopolizes resources and reduces community invasibility. To test for evidence of the spatial insurance hypothesis and to determine the role dispersal timing plays in this response we conducted a field experiment using crustacean zooplankton communities in a subarctic region that is expected to be highly impacted by climate change - Churchill, Canada. Three experiments were conducted where nutrients, salt, and dispersal were manipulated. The three experiments differed in time-since-disturbance that the dispersers were added. We found that coarse measures of diversity (i.e. species richness, evenness, and Shannon-Weiner diversity) were generally resistant to large magnitude disturbances, and that dispersal had the most impact on diversity when dispersers were added shortly after disturbance. Ecosystem functioning (chl-a) was degraded in disturbed communities, but dispersal recovered ecosystem function to undisturbed levels. This spatial insurance for ecosystem function was mediated through changes in community composition and the relative abundance of functional groups. Results suggest that regional diversity and habitat connectivity will be important in the future to maintain ecosystem function by introducing functionally redundant species to promote compensatory dynamics. © 2012 Blackwell Publishing Ltd.

  15. Persistence of an unusual pelagic zooplankton assemblage in a clear, mountain lake

    USGS Publications Warehouse

    Larson, G.L.; Hoffman, R.L.; C. David, McIntire

    2002-01-01

    The planktonic zooplankton assemblage in Mowich Lake, Mount Rainier National Park (MORA), was composed almost entirely of rotifers in 1966 and 1967. Adult pelagic crustacean taxa were rare. Their paucity was attributed to predation by kokanee salmon (Oncorhynchus nerka), which had been stocked in 1961. During a park-wide survey of 24 lakes in 1988, Mowich Lake was the only one that did not contain at least one planktonic crustacean species. Given the apparent persistence of the unusual pelagic zooplankton assemblage in Mowich Lake, the first objective of this study was to document the interannual variation in the taxonomic structure of the zooplankton assemblages in the lake from 1988 through 1999. A second objective was to determine if it was possible to predict the taxonomic composition of the pelagic crustacean zooplankton assemblage in Mowich Lake prior to the stocking of kokanee salmon. The Mowich Lake zooplankton assemblages in 1988-1999 were consistent with those in 1966 and 1967. Crustacean taxa were extremely rare, but they included most of the primary taxa collected from 23 MORA lakes surveyed in 1988. Nonetheless, the 1988 collections showed that the September rotifer assemblage in Mowich Lake was similar to 10 of the 24 lakes sampled. Seven of the 10 lakes were dominated by cladocerans, primarily Daphnia rosea and Holopedium gibberum. Therefore, it appeared that either one or both of these species may have numerically dominated the crustacean zooplankton assemblage in the lake prior to 1961.

  16. Persistence of an unusual pelagic zooplankton assemblage in a clear mountain lake

    USGS Publications Warehouse

    Larson, Gary L.; Hoffman, Robert L.; McIntire, C.D.

    2002-01-01

    The planktonic zooplankton assemblage in Mowich Lake, Mount Rainier National Park (MORA), was composed almost entirely of rotifers in 1966 and 1967. Adult pelagic crustacean taxa were rare. Their paucity was attributed to predation by kokanee salmon (Oncorhynchus nerka), which had been stocked in 1961. During a park-wide survey of 24 lakes in 1988, Mowich Lake was the only one that did not contain at least one planktonic crustacean species. Given the apparent persistence of the unusual pelagic zooplankton assemblage in Mowich Lake, the first objective of this study was to document the interannual variation in the taxonomic structure of the zooplankton assemblages in the lake from 1988 through 1999. A second objective was to determine if it was possible to predict the taxonomic composition of the pelagic crustacean zooplankton assemblage in Mowich Lake prior to the stocking of kokanee salmon. The Mowich Lake zooplankton assemblages in 1988a??1999 were consistent with those in 1966 and 1967. Crustacean taxa were extremely rare, but they included most of the primary taxa collected from 23 MORA lakes surveyed in 1988. Nonetheless, the 1988 collections showed that the September rotifer assemblage in Mowich Lake was similar to 10 of the 24 lakes sampled. Seven of the 10 lakes were dominated by cladocerans, primarily Daphnia rosea and Holopedium gibberum. Therefore, it appeared that either one or both of these species may have numerically dominated the crustacean zooplankton assemblage in the lake prior to 1961.

  17. DNA Barcoding of Zooplankton in the Hampton Roads Area: A Biodiversity Assessment

    NASA Astrophysics Data System (ADS)

    Salcedo, A.; Rodríguez, Á. E.; Gibson, D. M.

    2016-02-01

    The study of zooplankton biodiversity and distribution is crucial to understand oceanic ecosystems and anticipate the effects of climate change. Previously, identification of zooplankton relied in morphological identification employed by expert taxonomists. DNA barcoding, a technique that uses the mitochondrial DNA (mtDNA) Cytochrome Oxidase 1 (CO1) gene is widely used for taxonomic identification. Thus, this molecular technique will be used to begin a detailed characterization of zooplankton diversity, abundance and community structure in the Hampton Roads Area (HRA). Stations 1 (Jones Creek) and 3 (lower Chesapeake Bay) were sampled in June 19, 2015. Stations 1, 2 (James River), and 3 were sampled in September 2015. Zooplankton samples were collected in triplicates with a 0.5m, 200 µm mesh net. Physical parameters (dissolved oxygen, salinity, temperature and, water transparency) were measured. Species identified as Opistonema oglinum (Atlantic Thread Herring) and Paracalanus parvus copepods were found at station 3; Anchoa mitchilli and Acartia tonsa copepods were found at stations 1 and 3. This study indicates that mtDNA-CO1 barcoding is suitable to identify zooplankton to the species level and helps validate DNA barcoding as a faster, more accurate taxonomic approach. The long term objective of this project is to provide a comprehensive assessment of zooplankton in the HRA and to generate a reference record for broad monitoring programs; vital for a better understanding and management of ecologically and commercially important species.

  18. Temporal variation of cesium isotope concentrations and atom ratios in zooplankton in the Pacific off the east coast of Japan

    PubMed Central

    Ikenoue, Takahito; Takata, Hyoe; Kusakabe, Masashi; Kudo, Natsumi; Hasegawa, Kazuyuki; Ishimaru, Takashi

    2017-01-01

    After the Fukushima Daiichi Nuclear Power Plant accident in March 2011, concentrations of cesium isotopes (133Cs, 134Cs, and 137Cs) were measured in zooplankton collected in the Pacific off the east coast of Japan from May 2012 to February 2015. The time series of the data exhibited sporadic 137Cs concentration peaks in zooplankton. In addition, the atom ratio of 137Cs/133Cs in zooplankton was consistently high compared to that in ambient seawater throughout the sampling period. These phenomena cannot be explained fully by the bioaccumulation of 137Cs in zooplankton via ambient seawater intake, the inclusion of resuspended sediment in the plankton sample, or the taxonomic composition of the plankton. Autoradiography revealed highly radioactive particles within zooplankton samples, which could be the main factor underlying the sporadic appearance of high 137Cs concentrations in zooplankton as well as the higher ratio of 137Cs/133Cs in zooplankton than in seawater. PMID:28051136

  19. Temporal variation of cesium isotope concentrations and atom ratios in zooplankton in the Pacific off the east coast of Japan.

    PubMed

    Ikenoue, Takahito; Takata, Hyoe; Kusakabe, Masashi; Kudo, Natsumi; Hasegawa, Kazuyuki; Ishimaru, Takashi

    2017-01-04

    After the Fukushima Daiichi Nuclear Power Plant accident in March 2011, concentrations of cesium isotopes ( 133 Cs, 134 Cs, and 137 Cs) were measured in zooplankton collected in the Pacific off the east coast of Japan from May 2012 to February 2015. The time series of the data exhibited sporadic 137 Cs concentration peaks in zooplankton. In addition, the atom ratio of 137 Cs/ 133 Cs in zooplankton was consistently high compared to that in ambient seawater throughout the sampling period. These phenomena cannot be explained fully by the bioaccumulation of 137 Cs in zooplankton via ambient seawater intake, the inclusion of resuspended sediment in the plankton sample, or the taxonomic composition of the plankton. Autoradiography revealed highly radioactive particles within zooplankton samples, which could be the main factor underlying the sporadic appearance of high 137 Cs concentrations in zooplankton as well as the higher ratio of 137 Cs/ 133 Cs in zooplankton than in seawater.

  20. Avoidance of strobe lights by zooplankton

    USGS Publications Warehouse

    Hamel, Martin J.; Richards, Nathan S.; Brown, Michael L.; Chipps, Steven R.

    2010-01-01

    Underwater strobe lights can influence the behavior and distribution of fishes and are increasingly used as a technique to divert fish away from water intake structures on dams. However, few studies examine how strobe lights may affect organisms other than targeted species. To gain insight on strobe lighting effects on nontarget invertebrates, we investigated whether underwater strobe lights influence zooplankton distributions and abundance in Lake Oahe, South Dakota. Zooplankton were collected using vertical tows at 3 discrete distances from an underwater strobe light to quantify the influence of light intensity on zooplankton density. Samples were collected from 3 different depth ranges (0–10 m, 10–20 m and 20–30 m) at <1 m, 15 m and ⩾100 m distance intervals away from the strobe light. Copepods represented 67.2% and Daphnia spp. represented 23.3% of all zooplankton sampled from 17 August to 15 September 2004. Night time zooplankton densities significantly decreased in surface waters when strobe lights were activated. Copepods exhibited the greatest avoidance patterns, while Daphnia avoidance varied throughout sampling depths. These results indicate that zooplankton display negative phototaxic behavior to strobe lights and that researchers must be cognizant of potential effects to the ecosystem such as altering predator–prey interactions or affecting zooplankton distribution and growth.

  1. Zooplankton assemblages in montane lakes and ponds of Mount Rainier National Park, Washington State, USA

    USGS Publications Warehouse

    Larson, G.L.; Hoffman, R.; McIntire, C.D.; Lienkaemper, G.; Samora, B.

    2009-01-01

    Water quality and zooplankton samples were collected during the ice-free periods between 1988 and 2005 from 103 oligotrophic montane lakes and ponds located in low forest to alpine vegetation zones in Mount Rainier National Park, Washington State, USA. Collectively, 45 rotifer and 44 crustacean taxa were identified. Most of the numerically dominant taxa appeared to have wide niche breadths. The average number of taxa per lake decreased with elevation and generally increased as maximum lake depths increased (especially for rotifers). With one exception, fish presence/absence did not explain the taxonomic compositions of crustacean zooplankton assemblages. Many rotifer species were common members of zooplankton assemblages in montane lakes and ponds in western North America, whereas the crustacean taxa were common to some areas of the west, but not others. Constraints of the environmental variables did not appear to provide strong gradients to separate the distributions of most zooplankton species. This suggests that interspecific competitive interactions and stochastic processes regulate the taxonomic structures of the zooplankton assemblages at the landscape level. Crustacean species that had broad niche breadths were associated with different rotifer taxa across the environmental gradients. Studies of zooplankton assemblages need to address both crustacean and rotifer taxa, not one or the other.

  2. Mercury concentration variability in the zooplankton of the southern Baltic coastal zone

    NASA Astrophysics Data System (ADS)

    Bełdowska, Magdalena; Mudrak-Cegiołka, Stella

    2017-12-01

    Being a toxic element, mercury is introduced to the human organism through the consumption of fish and seafood, which in turn often feed on zooplankton. The bioaccumulation of Hg by zooplankton is an important factor influencing the magnitude of the mercury load introduced with food into the predator organism. Therefore the present article attempts to identify the processes and factors influencing Hg concentration in the zooplankton of the coastal zone, an area where marine organisms - an attractive food source for humans - thrive. This is particularly important in areas where climate changes influence the species composition and quantity of plankton. The studies were carried out on three test sites in the coastal zone of the southern Baltic Sea in the period from December 2011 to May 2013. The obtained results show that the shorting of the winter season is conducive to Hg increase in zooplankton and, consequently, in the trophic chain. High mercury concentrations were measured in genus Synchaeta and Keratella when Mesodinium rubrum were predominant in phytoplankton, while other sources of this metal in the plankton fauna were epilithon, epiphton and microbenthos. This is of particular importance when it comes to sheltered bays and estuaries with low water dynamics.

  3. Effects of Climate on the Zooplankton of the California Current

    NASA Astrophysics Data System (ADS)

    Lavaniegos, B. E.

    2007-05-01

    Almost six decades of sampling of the California Current system, carried out by the CalCOFI program (California Cooperative Fisheries Investigation) complemented by a decade of observations from the IMECOCAL program (Investigaciones Mexicanas de la Corriente de California), have revealed changing patterns in zooplankton abundances, species composition, and distributions over interannual through multidecadal time scales. Interannual changes associated with ENSO variability are manifested as strong but transitory perturbations in the mean annual cycle in seasonal abundances (and distributions) of particular species. An investigation of longer- term change, limited to the region off southern California, shows a persistent decline in zooplankton volumes (a proxy for overall biomass of macrozooplankton) between 1977 and 1998 that is considered to be a response to the well documented shift in basin-scale climate forcing that occurred in 1976-77. Further examination of this decline in zooplankton volumes indicates that it was due principally to the disappearance of several salp species after 1977. Other species and functional groups did not decline after the change in climate regime, while some species have followed persistent secular trends that appear to be associated more with the phenomenon of long-term global warming. Differences in the regional responses to climate change throughout the California Current system have also been observed recently in the spatial distribution of zooplankton biomass and changes in latitudinal ranges of certain species. For example, zooplankton biomass in the Baja California region show typical values for the 1997-98 El Niño that were followed by a decrease during the sharp transition to the cool La Niña conditions in 1999. This contrasts with the nearby region off southern California that was characterized by reduced biomass during the El Niño period and the subsequent recovery during the La Niña. Another regional contrast in

  4. Intra-annual seasonal variability of surface zooplankton distribution patterns along a 110°E transect of the Southern Ocean in the austral summer of 2011/12

    NASA Astrophysics Data System (ADS)

    Takahashi, Kunio T.; Hosie, Graham W.; Odate, Tsuneo

    2017-06-01

    Seasonal cycles can provide insight into the interactions between zooplankton and the environment. However, few intra-annual seasonal studies have been undertaken in the Southern Ocean. We investigated the composition, distribution, and abundance of micro- and meso-zooplankton along the 110°E meridian with three transects in December 2011, January and March 2012 using a Continuous Plankton Recorder. High zooplankton abundance was recorded in the Polar Frontal Zone (PFZ) and the Antarctic Zone (AZ) in both day and night at all transects with 179.0-300.9 ind. m-3. The small copepods Oithona similis, Ctenocalanus citer, and copepodites indet (copepod indeterminable) were dominant in the PFZ and AZ communities. Total zooplankton abundance was comparatively consistent among transects. Nighttime abundance levels remained high in the AZ in March with high abundance of copepodites indet. This seasonal fluctuation appeared to be influenced by recruitment of new populations. Most core species/taxa, except for O. similis, C. citer, and foraminiferans in the AZ area in early January, exhibited a diel decrease in abundance. A multi-ship intra-annual seasonal survey will help detect their various regional and/or seasonal distribution patterns, and the impacts of environmental change on Southern Ocean pelagic ecosystems.

  5. High evolutionary potential of marine zooplankton

    PubMed Central

    Peijnenburg, Katja T C A; Goetze, Erica

    2013-01-01

    Abstract Open ocean zooplankton often have been viewed as slowly evolving species that have limited capacity to respond adaptively to changing ocean conditions. Hence, attention has focused on the ecological responses of zooplankton to current global change, including range shifts and changing phenology. Here, we argue that zooplankton also are well poised for evolutionary responses to global change. We present theoretical arguments that suggest plankton species may respond rapidly to selection on mildly beneficial mutations due to exceptionally large population size, and consider the circumstantial evidence that supports our inference that selection may be particularly important for these species. We also review all primary population genetic studies of open ocean zooplankton and show that genetic isolation can be achieved at the scale of gyre systems in open ocean habitats (100s to 1000s of km). Furthermore, population genetic structure often varies across planktonic taxa, and appears to be linked to the particular ecological requirements of the organism. In combination, these characteristics should facilitate adaptive evolution to distinct oceanographic habitats in the plankton. We conclude that marine zooplankton may be capable of rapid evolutionary as well as ecological responses to changing ocean conditions, and discuss the implications of this view. We further suggest two priority areas for future research to test our hypothesis of high evolutionary potential in open ocean zooplankton, which will require (1) assessing how pervasive selection is in driving population divergence and (2) rigorously quantifying the spatial and temporal scales of population differentiation in the open ocean. Recent attention has focused on the ecological responses of open ocean zooplankton to current global change, including range shifts and changing phenology. Here, we argue that marine zooplankton also are well poised for evolutionary responses to global change. PMID:24567838

  6. High mortality of Red Sea zooplankton under ambient solar radiation.

    PubMed

    Al-Aidaroos, Ali M; El-Sherbiny, Mohsen M O; Satheesh, Sathianeson; Mantha, Gopikrishna; Agustī, Susana; Carreja, Beatriz; Duarte, Carlos M

    2014-01-01

    High solar radiation along with extreme transparency leads to high penetration of solar radiation in the Red Sea, potentially harmful to biota inhabiting the upper water column, including zooplankton. Here we show, based on experimental assessments of solar radiation dose-mortality curves on eight common taxa, the mortality of zooplankton in the oligotrophic waters of the Red Sea to increase steeply with ambient levels of solar radiation in the Red Sea. Responses curves linking solar radiation doses with zooplankton mortality were evaluated by exposing organisms, enclosed in quartz bottles, allowing all the wavelengths of solar radiation to penetrate, to five different levels of ambient solar radiation (100%, 21.6%, 7.2%, 3.2% and 0% of solar radiation). The maximum mortality rates under ambient solar radiation levels averaged (±standard error of the mean, SEM) 18.4±5.8% h(-1), five-fold greater than the average mortality in the dark for the eight taxa tested. The UV-B radiation required for mortality rates to reach ½ of maximum values averaged (±SEM) 12±5.6 h(-1)% of incident UVB radiation, equivalent to the UV-B dose at 19.2±2.7 m depth in open coastal Red Sea waters. These results confirm that Red Sea zooplankton are highly vulnerable to ambient solar radiation, as a consequence of the combination of high incident radiation and high water transparency allowing deep penetration of damaging UV-B radiation. These results provide evidence of the significance of ambient solar radiation levels as a stressor of marine zooplankton communities in tropical, oligotrophic waters. Because the oligotrophic ocean extends across 70% of the ocean surface, solar radiation can be a globally-significant stressor for the ocean ecosystem, by constraining zooplankton use of the upper levels of the water column and, therefore, the efficiency of food transfer up the food web in the oligotrophic ocean.

  7. Zooplankton Responses to Low-Oxygen Condition upon a Shallow Oxygen Minimum Zone in the Upwelling Region off Chile

    NASA Astrophysics Data System (ADS)

    Hidalgo, P.; Escribano, R.

    2015-12-01

    A shallow oxygen minimum zone (OMZ) is a critical component in the coastal upwelling ecosystem off Chile. This OMZ causes oxygen-deficient water entering the photic layer and affecting plankton communities having low tolerance to hypoxia. Variable, and usually species-dependent, responses of zooplankton to hypoxia condition can be found. Most dominant species avoid hypoxia by restricting their vertical distribution, while others can temporarily enter and even spent part of their life cycle within the OMZ. Whatever the case, low-oxygen conditions appear to affect virtually all vital rates of zooplankton, such as mortality, fecundity, development and growth and metabolism, and early developmental stages seem more sensitive, with significant consequences for population and community dynamics. For most study cases, these effects are negative at individual and population levels. Observations and predictions upon increasing upwelling intensity over the last 20-30 years indicate a gradual shoaling of the OMZ, and so that an expected enhancement of these negative effects of hypoxia on the zooplankton community. Unknown processes of adaptation and community-structure adjustments are expected to take place with uncertain consequences for the food web of this highly productive eastern boundary current ecosystem.

  8. Seasonal variations of zooplankton biomass and size-fractionated abundance in relation to environmental changes in a tropical mangrove estuary in the Straits of Malacca.

    PubMed

    Balqis, A R S; Yusoff, F M; Arshad, A; Nishikawa, J

    2016-07-01

    Seasonal variations of zooplankton community in terms of biomass and size-fractionated densities were studied in a tropical Sangga Kechil river, Matang, Perak from June 2010 to April 2011. Zooplankton and jellyfish (hydromedusae, siphonophores and ctenophores) samples were collected bimonthly from four sampling stations by horizontal towing of a 140-?m plankton net and 500 ?m bongo net, respectively. A total of 12 zooplankton groups consisting of six groups each of mesozooplankon (0.2 mm-2.0 mm) and macrozooplankton (2.0 mm-20.0 cm) were recorded. The total zooplankton density (12375?3339 ind m(-3)) and biomass (35.32?14.56 mg m(-3)) were highest during the northeast (NE) monsoon and southwest (SW) monsoon, respectively, indicating the presence of bigger individuals in the latter season. Mesozooplankton predominated (94%) over the macrozooplankton (6%) during all the seasons, and copepods contributed 84% of the total mesozooplankton abundance. Macrozooplankton was dominated by appendicularians during most of the seasons (43%-97%), except during the NE monsoon (December) when chaetognaths became the most abundant (89% of the total macrozooplankton). BIO-ENV analysis showed that total zooplankton density was correlated with turbidity, total nitrogen and total phosphorus, which in turn was positively correlated to chlorophyll a. Cluster analysis of the zooplankton community showed no significant temporal difference between the SW and NE monsoon season during the study period (> 90% similarity). The present study revealed that the zooplankton community in the tropical mangrove estuary in the Straits of Malacca was dominated by mesoplankton, especially copepods.

  9. Fish-mediated changes in bacterioplankton community composition: an in situ mesocosm experiment

    NASA Astrophysics Data System (ADS)

    Luo, Congqiang; Yi, Chunlong; Ni, Leyi; Guo, Longgen

    2017-06-01

    We characterized variations in bacterioplankton community composition (BCC) in mesocosms subject to three different treatments. Two groups contained fish (group one: Cyprinus carpio; group two: Hypophthalmichthys molitrix); and group three, the untreated mesocosm, was the control. Samples were taken seven times over a 49-day period, and BCC was analyzed by PCR-denaturing gradient gel electrophoresis (DGGE) and real-time quantitative PCR (qPCR). Results revealed that introduction of C. carpio and H. molitrix had a remarkable impact on the composition of bacterioplankton communities, and the BCC was significantly different between each treatment. Sequencing of DGGE bands revealed that the bacterioplankton community in the different treatment groups was consistent at a taxonomic level, but differed in its abundance. H. molitrix promoted the richness of Alphaproteobacteria and Actinobacteria, while more bands affiliated to Cyanobacteria were detected inC. carpio mesocosms. The redundancy analysis (RDA) result demonstrated that the BCC was closely related to the bottom-up (total phosphorus, chlorophyll a, phytoplankton biomass) and top-down forces (biomass of copepods and cladocera) in C. carpio and control mesocosms, respectively. We found no evidence for top-down regulation of BCC by zooplankton in H. molitrix mesocosms, while grazing by protozoa (heterotrophic nanoflagellates, ciliates) became the major way to regulate BCC. Total bacterioplankton abundances were significantly higher in C. carpio mesocosms because of high nutrient concentration and suspended solids. Our study provided insights into the relationship between fish and bacterioplankton at species level, leading to a deep understanding of the function of the microbial loop and the aquatic ecosystem.

  10. Fish-mediated changes in bacterioplankton community composition: an in situ mesocosm experiment

    NASA Astrophysics Data System (ADS)

    Luo, Congqiang; Yi, Chunlong; Ni, Leyi; Guo, Longgen

    2018-03-01

    We characterized variations in bacterioplankton community composition (BCC) in mesocosms subject to three different treatments. Two groups contained fish (group one: Cyprinus carpio; group two: Hypophthalmichthys molitrix); and group three, the untreated mesocosm, was the control. Samples were taken seven times over a 49-d period, and BCC was analyzed by PCR-denaturing gradient gel electrophoresis (DGGE) and real-time quantitative PCR (qPCR). Results revealed that introduction of C. carpio and H. molitrix had a remarkable impact on the composition of bacterioplankton communities, and the BCC was significantly different between each treatment. Sequencing of DGGE bands revealed that the bacterioplankton community in the different treatment groups was consistent at a taxonomic level, but differed in its abundance. H. molitrix promoted the richness of Alphaproteobacteria and Actinobacteria, while more bands affiliated to Cyanobacteria were detected in C. carpio mesocosms. The redundancy analysis (RDA) result demonstrated that the BCC was closely related to the bottom-up (total phosphorus, chlorophyll a, phytoplankton biomass) and top-down forces (biomass of copepods and cladocera) in C. carpio and control mesocosms, respectively. We found no evidence for top-down regulation of BCC by zooplankton in H. molitrix mesocosms, while grazing by protozoa (heterotrophic nanoflagellates, ciliates) became the major way to regulate BCC. Total bacterioplankton abundances were significantly higher in C. carpio mesocosms because of high nutrient concentration and suspended solids. Our study provided insights into the relationship between fish and bacterioplankton at species level, leading to a deep understanding of the function of the microbial loop and the aquatic ecosystem.

  11. Moonlight Drives Ocean-Scale Mass Vertical Migration of Zooplankton during the Arctic Winter.

    PubMed

    Last, Kim S; Hobbs, Laura; Berge, Jørgen; Brierley, Andrew S; Cottier, Finlo

    2016-01-25

    In extreme high-latitude marine environments that are without solar illumination in winter, light-mediated patterns of biological migration have historically been considered non-existent [1]. However, diel vertical migration (DVM) of zooplankton has been shown to occur even during the darkest part of the polar night, when illumination levels are exceptionally low [2, 3]. This paradox is, as yet, unexplained. Here, we present evidence of an unexpected uniform behavior across the entire Arctic, in fjord, shelf, slope and open sea, where vertical migrations of zooplankton are driven by lunar illumination. A shift from solar-day (24-hr period) to lunar-day (24.8-hr period) vertical migration takes place in winter when the moon rises above the horizon. Further, mass sinking of zooplankton from the surface waters and accumulation at a depth of ∼50 m occurs every 29.5 days in winter, coincident with the periods of full moon. Moonlight may enable predation of zooplankton by carnivorous zooplankters, fish, and birds now known to feed during the polar night [4]. Although primary production is almost nil at this time, lunar vertical migration (LVM) may facilitate monthly pulses of carbon remineralization, as they occur continuously in illuminated mesopelagic systems [5], due to community respiration of carnivorous and detritivorous zooplankton. The extent of LVM during the winter suggests that the behavior is highly conserved and adaptive and therefore needs to be considered as "baseline" zooplankton activity in a changing Arctic ocean [6-9]. VIDEO ABSTRACT. Copyright © 2016 The Authors. Published by Elsevier Ltd.. All rights reserved.

  12. Changes in seasonal nearshore zooplankton abundance patterns in Lake Ontario following establishment of the exotic predator Cercopagis pengoi

    USGS Publications Warehouse

    Warner, David M.; Rudstam, Lars G.; Benoit, Hugues; Mills, Edward L.; Johannsson, Ora E.

    2006-01-01

    Cercopagis pengoi, a zooplanktivore first discovered in Lake Ontario in 1998, may reduce availability of prey for planktivorous fish. Cercoapgis pengoi is most abundant in late summer and fall. Therefore, we hypothesized that abundance of small zooplankton (bosminids and cyclopoids) species would decrease at that time. To determine if the establishment of C. pengoi was followed by changes in the zooplankton community, seasonal patterns in nearshore zooplankton collected from May to October 1995–2000 were examined. Early summer density of small zooplankton was similar in all years while late summer and fall densities were significantly lower in 1998–2000 than in 1995–1997. The declines of small zooplankton coincided seasonally with the peak in C. pengoidensity. Other possible causes for the observed changes in small zooplankton are less likely. High levels of fish predation should have resulted in smaller zooplankton in 1998–2000 than in 1995–1997 and larger declines in Daphnia than other groups. This was not observed. There was no significant decline in chlorophyll-a concentrations or changes in temperature between 1995–1997 and 1998–2000. Therefore, the declines in density of small zooplankton were most likely the result of C. pengoi predation. The effect of C. pengoi establishment on alewives is increased competition for zooplankton prey but C. pengoi has replaced a portion of the zooplankton biomass and adult alewife diet formerly dominated by Diacyclops thomasi and Bosmina longirostris.

  13. Distribution and abundance of zooplankton populations in Crater Lake, Oregon

    USGS Publications Warehouse

    Larson, G.L.; McIntire, C.D.; Buktenica, M.W.; Girdner, S.F.; Truitt, R.E.

    2007-01-01

    The zooplankton assemblages in Crater Lake exhibited consistency in species richness and general taxonomic composition, but varied in density and biomass during the period between 1988 and 2000. Collectively, the assemblages included 2 cladoceran taxa and 10 rotifer taxa (excluding rare taxa). Vertical habitat partitioning of the water column to a depth of 200 m was observed for most species with similar food habits and/or feeding mechanisms. No congeneric replacement was observed. The dominant species in the assemblages were variable, switching primarily between periods of dominance of Polyarthra-Keratella cochlearis and Daphnia. The unexpected occurrence and dominance of Asplanchna in 1991 and 1992 resulted in a major change in this typical temporal shift between Polyarthra-K. cochlearis and Daphnia. Following a collapse of the zooplankton biomass in 1993 that was probably caused by predation from Asplanchna, Kellicottia dominated the zooplankton assemblage biomass between 1994 and 1997. The decline in biomass of Kellicottia by 1998 coincided with a dramatic increase in Daphnia biomass. When Daphnia biomass declined by 2000, Keratella biomass increased again. Thus, by 1998 the assemblage returned to the typical shift between Keratella-Polyarthra and Daphnia. Although these observations provided considerable insight about the interannual variability of the zooplankton assemblages in Crater Lake, little was discovered about mechanisms behind the variability. When abundant, kokanee salmon may have played an important role in the disappearance of Daphnia in 1990 and 2000 either through predation, inducing diapause, or both. ?? 2007 Springer Science+Business Media B.V.

  14. Synchronous dynamics of zooplankton competitors prevail in temperate lake ecosystems.

    PubMed

    Vasseur, David A; Fox, Jeremy W; Gonzalez, Andrew; Adrian, Rita; Beisner, Beatrix E; Helmus, Matthew R; Johnson, Catherine; Kratina, Pavel; Kremer, Colin; de Mazancourt, Claire; Miller, Elizabeth; Nelson, William A; Paterson, Michael; Rusak, James A; Shurin, Jonathan B; Steiner, Christopher F

    2014-08-07

    Although competing species are expected to exhibit compensatory dynamics (negative temporal covariation), empirical work has demonstrated that competitive communities often exhibit synchronous dynamics (positive temporal covariation). This has led to the suggestion that environmental forcing dominates species dynamics; however, synchronous and compensatory dynamics may appear at different length scales and/or at different times, making it challenging to identify their relative importance. We compiled 58 long-term datasets of zooplankton abundance in north-temperate and sub-tropical lakes and used wavelet analysis to quantify general patterns in the times and scales at which synchronous/compensatory dynamics dominated zooplankton communities in different regions and across the entire dataset. Synchronous dynamics were far more prevalent at all scales and times and were ubiquitous at the annual scale. Although we found compensatory dynamics in approximately 14% of all combinations of time period/scale/lake, there were no consistent scales or time periods during which compensatory dynamics were apparent across different regions. Our results suggest that the processes driving compensatory dynamics may be local in their extent, while those generating synchronous dynamics operate at much larger scales. This highlights an important gap in our understanding of the interaction between environmental and biotic forces that structure communities. © 2014 The Author(s) Published by the Royal Society. All rights reserved.

  15. Zooplankton fecal pellets, marine snow, phytodetritus and the ocean's biological pump

    NASA Astrophysics Data System (ADS)

    Turner, Jefferson T.

    2015-01-01

    The 'biological pump' is the process by which photosynthetically-produced organic matter in the ocean descends from the surface layer to depth by a combination of sinking particles, advection or vertical mixing of dissolved organic matter, and transport by animals. Particulate organic matter that is exported downward from the euphotic zone is composed of combinations of fecal pellets from zooplankton and fish, organic aggregates known as 'marine snow' and phytodetritus from sinking phytoplankton. Previous reviews by Turner and Ferrante (1979) and Turner (2002) focused on publications that appeared through late 2001. Since that time, studies of the biological pump have continued, and there have been >300 papers on vertical export flux using sediment traps, large-volume filtration systems and other techniques from throughout the global ocean. This review will focus primarily on recent studies that have appeared since 2001. Major topics covered in this review are (1) an overview of the biological pump, and its efficiency and variability, and the role of dissolved organic carbon in the biological pump; (2) zooplankton fecal pellets, including the contribution of zooplankton fecal pellets to export flux, epipelagic retention of zooplankton fecal pellets due to zooplankton activities, zooplankton vertical migration and fecal pellet repackaging, microbial ecology of fecal pellets, sinking velocities of fecal pellets and aggregates, ballasting of sinking particles by mineral contents, phytoplankton cysts, intact cells and harmful algae toxins in fecal pellets, importance of fecal pellets from various types of zooplankton, and the role of zooplankton fecal pellets in picoplankton export; (3) marine snow, including the origins, abundance, and distributions of marine snow, particles and organisms associated with marine snow, consumption and fragmentation of marine snow by animals, pathogens associated with marine snow; (4) phytodetritus, including pulsed export of

  16. Indigenous species barcode database improves the identification of zooplankton

    PubMed Central

    Yang, Jianghua; Zhang, Wanwan; Sun, Jingying; Xie, Yuwei; Zhang, Yimin; Burton, G. Allen; Yu, Hongxia

    2017-01-01

    Incompleteness and inaccuracy of DNA barcode databases is considered an important hindrance to the use of metabarcoding in biodiversity analysis of zooplankton at the species-level. Species barcoding by Sanger sequencing is inefficient for organisms with small body sizes, such as zooplankton. Here mitochondrial cytochrome c oxidase I (COI) fragment barcodes from 910 freshwater zooplankton specimens (87 morphospecies) were recovered by a high-throughput sequencing platform, Ion Torrent PGM. Intraspecific divergence of most zooplanktons was < 5%, except Branchionus leydign (Rotifer, 14.3%), Trichocerca elongate (Rotifer, 11.5%), Lecane bulla (Rotifer, 15.9%), Synchaeta oblonga (Rotifer, 5.95%) and Schmackeria forbesi (Copepod, 6.5%). Metabarcoding data of 28 environmental samples from Lake Tai were annotated by both an indigenous database and NCBI Genbank database. The indigenous database improved the taxonomic assignment of metabarcoding of zooplankton. Most zooplankton (81%) with barcode sequences in the indigenous database were identified by metabarcoding monitoring. Furthermore, the frequency and distribution of zooplankton were also consistent between metabarcoding and morphology identification. Overall, the indigenous database improved the taxonomic assignment of zooplankton. PMID:28977035

  17. Acoustic classification of zooplankton

    NASA Astrophysics Data System (ADS)

    Martin Traykovski, Linda V.

    1998-11-01

    Work on the forward problem in zooplankton bioacoustics has resulted in the identification of three categories of acoustic scatterers: elastic-shelled (e.g. pteropods), fluid-like (e.g. euphausiids), and gas-bearing (e.g. siphonophores). The relationship between backscattered energy and animal biomass has been shown to vary by a factor of ~19,000 across these categories, so that to make accurate estimates of zooplankton biomass from acoustic backscatter measurements of the ocean, the acoustic characteristics of the species of interest must be well-understood. This thesis describes the development of both feature based and model based classification techniques to invert broadband acoustic echoes from individual zooplankton for scatterer type, as well as for particular parameters such as animal orientation. The feature based Empirical Orthogonal Function Classifier (EOFC) discriminates scatterer types by identifying characteristic modes of variability in the echo spectra, exploiting only the inherent characteristic structure of the acoustic signatures. The model based Model Parameterisation Classifier (MPC) classifies based on correlation of observed echo spectra with simplified parameterisations of theoretical scattering models for the three classes. The Covariance Mean Variance Classifiers (CMVC) are a set of advanced model based techniques which exploit the full complexity of the theoretical models by searching the entire physical model parameter space without employing simplifying parameterisations. Three different CMVC algorithms were developed: the Integrated Score Classifier (ISC), the Pairwise Score Classifier (PSC) and the Bayesian Probability Classifier (BPC); these classifiers assign observations to a class based on similarities in covariance, mean, and variance, while accounting for model ambiguity and validity. These feature based and model based inversion techniques were successfully applied to several thousand echoes acquired from broadband (~350 k

  18. Prey-driven control of predator assemblages: zooplankton abundance drives aquatic beetle colonization.

    PubMed

    Pintar, Matthew R; Resetarits, William J

    2017-08-01

    Trophic interactions are critical determinants of community structure and ecosystem function. In freshwater habitats, top predators are traditionally viewed as drivers of ecosystem structure, shaping populations of consumers and primary producers. The temporary nature of small water bodies makes them dependent on colonization by many organisms, particularly insects that form highly diverse predator assemblages. We conducted mesocosm experiments with naturally colonizing populations of aquatic beetles to assess how prey (zooplankton) abundances influenced colonization and assemblages of natural populations of aquatic beetles. We experimentally demonstrate that zooplankton populations can be proximate regulators of predator populations and assemblages via prey-density-dependent predator recruitment. Our results provide support for the importance of prey populations in structuring predator populations and the role of habitat selection in structuring communities. We indicate that traditional views of predators as drivers of ecosystem structure in many systems may not provide a comprehensive picture, particularly in the context of highly disturbed or ephemeral habitats. © 2017 by the Ecological Society of America.

  19. Diet compositions and trophic guild structure of the eastern Chukchi Sea demersal fish community

    NASA Astrophysics Data System (ADS)

    Whitehouse, George A.; Buckley, Troy W.; Danielson, Seth L.

    2017-01-01

    Fishes are an important link in Arctic marine food webs, connecting production of lower trophic levels to apex predators. We analyzed 1773 stomach samples from 39 fish species collected during a bottom trawl survey of the eastern Chukchi Sea in the summer of 2012. We used hierarchical cluster analysis of diet dissimilarities on 21 of the most well sampled species to identify four distinct trophic guilds: gammarid amphipod consumers, benthic invertebrate generalists, fish and shrimp consumers, and zooplankton consumers. The trophic guilds reflect dominant prey types in predator diets. We used constrained analysis of principal coordinates (CAP) to determine if variation within the composite guild diets could be explained by a suite of non-diet variables. All CAP models explained a significant proportion of the variance in the diet matrices, ranging from 7% to 25% of the total variation. Explanatory variables tested included latitude, longitude, predator length, depth, and water mass. These results indicate a trophic guild structure is present amongst the demersal fish community during summer in the eastern Chukchi Sea. Regular monitoring of the food habits of the demersal fish community will be required to improve our understanding of the spatial, temporal, and interannual variation in diet composition, and to improve our ability to identify and predict the impacts of climate change and commercial development on the structure and functioning of the Chukchi Sea ecosystem.

  20. Interannual abundance changes of gelatinous carnivore zooplankton unveil climate-driven hydrographic variations in the Iberian Peninsula, Portugal.

    PubMed

    D'Ambrosio, Mariaelena; Molinero, Juan C; Azeiteiro, Ulisses M; Pardal, Miguel A; Primo, Ana L; Nyitrai, Daniel; Marques, Sónia C

    2016-09-01

    The persistent massive blooms of gelatinous zooplankton recorded during recent decades may be indicative of marine ecosystem changes. In this study, we investigated the potential influence of the North Atlantic climate (NAO) variability on decadal abundance changes of gelatinous carnivore zooplankton in the Mondego estuary, Portugal, over the period 2003-2013. During the 11-year study, the community of gelatinous carnivores encompassed a larger diversity of hydromedusae than siphonophores; the former dominated by Obelia spp., Lizzia blondina, Clythia hemisphaerica, Liriope tetraphylla and Solmaris corona, while the latter dominated by Muggiaea atlantica. Gelatinous carnivore zooplankton displayed marked interannual variability and mounting species richness over the period examined. Their pattern of abundance shifted towards larger abundances ca. 2007 and significant phenological changes. The latter included a shift in the mean annual pattern (from unimodal to bimodal peak, prior and after 2007 respectively) and an earlier timing of the first annual peak concurrent with enhanced temperatures. These changes were concurrent with the climate-driven environmental variability mainly controlled by the NAO, which displayed larger variance after 2007 along with an enhanced upwelling activity. Structural equation modelling allowed depicting cascading effects derived from the NAO influence on regional climate and upwelling variability further shaping water temperature. Such cascading effect percolated the structure and dynamics of the community of gelatinous carnivore zooplankton in the Mondego estuary. Copyright © 2016 Elsevier Ltd. All rights reserved.

  1. Variations in the structural and functional diversity of zooplankton over vertical and horizontal environmental gradients en route to the Arctic Ocean through the Fram Strait.

    PubMed

    Gluchowska, Marta; Trudnowska, Emilia; Goszczko, Ilona; Kubiszyn, Anna Maria; Blachowiak-Samolyk, Katarzyna; Walczowski, Waldemar; Kwasniewski, Slawomir

    2017-01-01

    A multi-scale approach was used to evaluate which spatial gradient of environmental variability is the most important in structuring zooplankton diversity in the West Spitsbergen Current (WSC). The WSC is the main conveyor of warm and biologically rich Atlantic water to the Arctic Ocean through the Fram Strait. The data set included 85 stratified vertical zooplankton samples (obtained from depths up to 1000 metres) covering two latitudinal sections (76°30'N and 79°N) located across the multi-path WSC system. The results indicate that the most important environmental variables shaping the zooplankton structural and functional diversity and standing stock variability are those associated with depth, whereas variables acting in the horizontal dimension are of lesser importance. Multivariate analysis of the zooplankton assemblages, together with different univariate descriptors of zooplankton diversity, clearly illustrated the segregation of zooplankton taxa in the vertical plane. The epipelagic zone (upper 200 m) hosted plentiful, Oithona similis-dominated assemblages with a high proportion of filter-feeding zooplankton. Although total zooplankton abundance declined in the mesopelagic zone (200-1000 m), zooplankton assemblages in that zone were more diverse and more evenly distributed, with high contributions from both herbivorous and carnivorous taxa. The vertical distribution of integrated biomass (mg DW m-2) indicated that the total zooplankton biomass in the epipelagic and mesopelagic zones was comparable. Environmental gradients acting in the horizontal plane, such as the ones associated with different ice cover and timing of the spring bloom, were reflected in the latitudinal variability in protist community structure and probably caused differences in succession in the zooplankton community. High abundances of Calanus finmarchicus in the WSC core branch suggest the existence of mechanisms advantageous for higher productivity or/and responsible for physical

  2. Vertical gradients in species richness and community composition across the twilight zone in the North Pacific Subtropical Gyre.

    PubMed

    Sommer, Stephanie A; Van Woudenberg, Lauren; Lenz, Petra H; Cepeda, Georgina; Goetze, Erica

    2017-11-01

    Although metazoan animals in the mesopelagic zone play critical roles in deep pelagic food webs and in the attenuation of carbon in midwaters, the diversity of these assemblages is not fully known. A metabarcoding survey of mesozooplankton diversity across the epipelagic, mesopelagic and upper bathypelagic zones (0-1500 m) in the North Pacific Subtropical Gyre revealed far higher estimates of species richness than expected given prior morphology-based studies in the region (4,024 OTUs, 10-fold increase), despite conservative bioinformatic processing. Operational taxonomic unit (OTU) richness of the full assemblage peaked at lower epipelagic-upper mesopelagic depths (100-300 m), with slight shoaling of maximal richness at night due to diel vertical migration, in contrast to expectations of a deep mesopelagic diversity maximum as reported for several plankton groups in early systematic and zoogeographic studies. Four distinct depth-stratified species assemblages were identified, with faunal transitions occurring at 100 m, 300 m and 500 m. Highest diversity occurred in the smallest zooplankton size fractions (0.2-0.5 mm), which had significantly lower % OTUs classified due to poor representation in reference databases, suggesting a deep reservoir of poorly understood diversity in the smallest metazoan animals. A diverse meroplankton assemblage also was detected (350 OTUs), including larvae of both shallow and deep living benthic species. Our results provide some of the first insights into the hidden diversity present in zooplankton assemblages in midwaters, and a molecular reappraisal of vertical gradients in species richness, depth distributions and community composition for the full zooplankton assemblage across the epipelagic, mesopelagic and upper bathypelagic zones. © 2017 The Authors. Molecular Ecology Published by John Wiley & Sons Ltd.

  3. Fall Composition of Storage Lipids is Associated with the Overwintering Strategy of Daphnia.

    PubMed

    Mariash, Heather L; Cusson, Mathieu; Rautio, Milla

    2017-01-01

    Diapause, which occurs through the production of dormant eggs, is a strategy used by some zooplankton to avoid winter months of persistent low temperatures and low food availability. However, reports of active zooplankton under the ice indicate that other strategies also exist. This study was aimed at evaluating whether the composition of storage lipids in the fall differs between diapausing and active overwintering Daphnia. We assessed the quantity of storage lipids and fatty acid (FA) composition of Daphnia species, along with FA content of seston, in six boreal, alpine and subarctic lakes at the onset of winter, and evaluated the association between storage lipids and Daphnia overwintering strategy. We found that active overwintering Daphnia had >55% body fat and the highest FA concentrations. Polyunsaturated FA, especially stearidonic acid (18:4n-3; SDA) and high ratios of n-3:n-6, were preferentially retained to a greater extent in active overwintering Daphnia than in those that entered diapause. Daphnia FA composition was independent of that of the seston diet, indicating that Daphnia adjusted their storage lipids according to the physiological requirements of a given overwintering strategy. The occurrence of an active overwintering strategy has consequences for zooplankton community structure, and can have important implications for the transfer of high-quality energy at higher trophic levels.

  4. Lessons learned from multifrequency acoustic studies of zooplankton and micronekton in the western Antarctic Peninsula and the Gulf of Maine

    NASA Astrophysics Data System (ADS)

    Lavery, Andone C.; Lawson, Gareth L.; Wiebe, Peter H.

    2005-09-01

    A series of acoustic surveys of zooplankton and micronekton have been performed in the Gulf of Maine (GOM), off the northeast United States, and along the western Antarctic Peninsula (WAP). Similar techniques were used to survey these regions, including multifrequency acoustic backscatter (43, 120, 200, 420, 1000 kHz), MOCNESS, CTD, VPR, and in some instances physical microstructure measurements. The GOM is characterized by heterogeneous zooplankton communities in which biomass is dominated by abundant millimeter sized copepods, but the scattering is frequently dominated by a smaller number of strong scatterers, such as shelled pteropods and gas-bearing siphonophores. Heterogeneous zooplankton communities are also observed in the WAP, but patches of comparatively large (40 mm) Antarctic krill are present and often dominate the scattering. In both regions, striking patterns are evident in the backscatter that can be related to the biological community structure and physical processes. Differences in community structure, however, strongly affect the quantitative inferences that can be made based on the acoustic data. Combining direct biological and environmental information with recently developed scattering models has allowed dominant scatterers to be identified and inferences to be made regarding the physical factors influencing backscatter variability, though only under limited conditions. Highlights from these studies and lessons learned regarding our ability to interpret multifrequency acoustics are presented.

  5. Acoustic Scattering Models of Zooplankton and Microstructure

    DTIC Science & Technology

    1997-09-30

    shelled (gastropods), and gas-bearing ( siphonophores )). 5) LABORATORY EXPERIMENTATION: ZOOPLANKTON. An extensive set of laboratory measurements on the...zooplankton ( siphonophores and pteropods) that have high enough target strengths and occur in sufficiently high numbers that they could interfere with

  6. Microscale nutrient patches produced by zooplankton

    PubMed Central

    Lehman, John T.; Scavia, Donald

    1982-01-01

    Both track autoradiography and grain-density autoradiography show that individual zooplankton create miniature patches of dissolved nutrients and that algae exploit those regions to absorb phosphate. The patches are short lived and can be dispersed artificially by small-scale turbulence. Our data support a simple model of encounters between algae and nutrient plumes produced by swimming zooplankton. PMID:16593218

  7. Mesozooplankton respiration and community structure in a seamount region of the eastern South Pacific

    NASA Astrophysics Data System (ADS)

    Frederick, Leissing; Escribano, Ruben; Morales, Carmen E.; Hormazabal, Samuel; Medellín-Mora, Johanna

    2018-05-01

    Seamounts in the Juan Fernandez Ridge, as well as in other seamount regions in the eastern South Pacific and in the world oceans, remain poorly studied ecosystems in terms of structure and functioning. Here, community respiration by epipelagic mesozooplankton in three seamounts of the Juan Fernandez Ridge, including the O`Higgins Seamount close to the coastal upwelling zone and two oceanic seamounts near the Juan Fernandez Archipelago ( 33°S-78°W), was assessed. Oxygen consumption by mixed assemblages was estimated using continuous measurements of dissolved oxygen concentration under controlled temperature during onboard, short-term incubations (2-4 h). Mesozooplankton composition was analyzed with a ZooScan device and expressed in terms of community normalized size spectra, and taxa and size diversity (Shannon-Wiener index). Carbon-specific community respiration rates in the upper 100 m layer were in the range of 0.3-1.9 mg O2 m-2 d-1, indicating that up to 3.1% of the mesozooplankton biomass can be respired on a daily basis. The mesozooplankton community was dominated by small-size copepods but the proportions of small copepods, large copepods, and gelatinous zooplankton (mostly salps) changed between the seamounts, in association with modifications in taxa composition, size diversity, and the slope of the size spectrum. Community respiration was significantly correlated to these community descriptors, suggesting the composition of the pelagic community has a direct impact on the total amount of respired-C. Connectivity between the coastal upwelling zone and the Juan Fernandez Ridge region mediated by mesoscale activity, interacting with the seamounts, is suggested as a most important process in controlling zooplankton community structure and in turn community metabolism.

  8. Acoustic Scattering Models of Zooplankton and Microstructures

    DTIC Science & Technology

    1998-09-30

    scattering by the seafloor. SCATTERING BY GAS-BEARING ZOOPLANKTON. In earlier work we showed that the scattering by gas-bearing zooplankton ( siphonophores ... siphonophores and pteropods) that have high enough target strengths and occur in sufficiently high numbers that they could interfere with the performance of

  9. Temporal Variability of Zooplankton (2000-2013) in the Levantine Sea: Significant Changes Associated to the 2005-2010 EMT-like Event?

    PubMed Central

    Ouba, Anthony; Abboud-Abi Saab, Marie; Stemmann, Lars

    2016-01-01

    In this study, we investigated, for the first time, the potential impact of environmental changes on zooplankton abundance over a fourteen year period (2000–2013) at an offshore station in the Eastern Mediterranean Sea (the Levantine basin, offshore Lebanon). Samples were collected monthly and analyzed using the semi-automated system ZooScan. Salinity, temperature and phytoplankton abundance (nano and microphytoplankton) were also measured. Results show no significant temporal trend in sea surface temperature over the years. Between 2005–2010, salinity in the upper layer (0–80 m) of the Levantine basin increased (~0.3°C). During this 5 year period, total zooplankton abundance significantly increased. These modifications were concomitant to the activation of Aegean Sea as a source of dense water formation as part of the “Eastern Mediterranean Transient-like” event. The results of the present study suggested that zooplankton benefited from enhanced phytoplankton production during the mixing years of the event. Changes in the phenology of some taxa were observed accordingly with a predominantly advanced peak of zooplankton abundance. In conclusion, long-term changes in zooplankton abundance were related to the Levantine thermohaline circulation rather than sea surface warming. Sampling must be maintained to assess the impact of long-term climate change on zooplankton communities. PMID:27459093

  10. Feeding ecology of mesopelagic zooplankton of the subtropical and subarctic North Pacific Ocean determined with fatty acid biomarkers

    NASA Astrophysics Data System (ADS)

    Wilson, S. E.; Steinberg, D. K.; Chu, F.-L. E.; Bishop, J. K. B.

    2010-10-01

    Mesopelagic zooplankton may meet their nutritional and metabolic requirements in a number of ways including consumption of sinking particles, carnivory, and vertical migration. How these feeding modes change with depth or location, however, is poorly known. We analyzed fatty acid (FA) profiles to characterize zooplankton diet and large particle (>51 μm) composition in the mesopelagic zone (base of euphotic zone -1000 m) at two contrasting time-series sites in the subarctic (station K2) and subtropical (station ALOHA) Pacific Ocean. Total FA concentration was 15.5 times higher in zooplankton tissue at K2, largely due to FA storage by seasonal vertical migrators such as Neocalanus and Eucalanus. FA biomarkers specific to herbivory implied a higher plant-derived food source at mesotrophic K2 than at oligotrophic ALOHA. Zooplankton FA biomarkers specific to dinoflagellates and diatoms indicated that diatoms, and to a lesser extent, dinoflagellates were important food sources at K2. At ALOHA, dinoflagellate FAs were more prominent. Bacteria-specific FA biomarkers in zooplankton tissue were used as an indicator of particle feeding, and peaks were recorded at depths where known particle feeders were present at ALOHA (e.g., ostracods at 100-300 m). In contrast, depth profiles of bacterial FA were relatively constant with depth at K2. Diatom, dinoflagellate, and bacterial biomarkers were found in similar proportions in both zooplankton and particles with depth at both locations, providing additional evidence that mesopelagic zooplankton consume sinking particles. Carnivory indices were higher and increased significantly with depth at ALOHA, and exhibited distinct peaks at K2, representing an increase in dependence on other zooplankton for food in deep waters. Our results indicate that feeding ecology changes with depth as well as by location. These changes in zooplankton feeding ecology from the surface through the mesopelagic zone, and between contrasting environments

  11. A review of zooplankton investigations of the Black Sea over the last decade

    NASA Astrophysics Data System (ADS)

    Kideys, Ahmet E.; Kovalev, Alexander V.; Shulman, Gregory; Gordina, Anna; Bingel, Ferit

    2000-03-01

    Investigations performed in the last decade indicate that there have been important changes in the zooplankton composition and structure in the Black Sea. However, contrasting events taking place in different regions of the Black Sea indicate a non-uniform structure of its ecosystem. Several fodder zooplankton species have either disappeared from or substantially decreased in number at different sampling sites of the Black Sea over the last one or two decades. Some other species adapted to thrive in eutrophic conditions have either appeared or increased in quantity. Meanwhile the biomass of the fodder zooplankton has also fluctuated considerably through the years. However, there seems to be a reverse trend in the long-term variation of fodder zooplankton between the shallow western and deep eastern areas. Over the last few decades the abundance of fish larvae has decreased significantly when compared either to past records or with larval abundances of other seas. This was shown to be due mainly to malnutrition of larvae. One of the most striking changes in the ichthyoplankton has been the shift in the spawning areas of the main fish species, the anchovy Engraulis encrasicolus from the northwestern to the southeastern Black Sea. Even the invading ctenophore Mnemiopsis were found to be starving. The condition of other species ( Calanus euxinus and Pleurobrachia pileus) disclosed the fact that cyclonic regions where chlorophyll and nutrient concentrations are high, provide better nutrition than anticyclonic regions.

  12. Zooplankton time-series in the Balearic Sea (Western Mediterranean): Variability during the decade 1994 2003

    NASA Astrophysics Data System (ADS)

    Fernández de Puelles, Maria Luz; Alemany, Francisco; Jansá, Javier

    2007-08-01

    Studies of plankton time-series from the Balearic islands waters are presented for the past decade, with main emphasis on the variability of zooplankton and how it relates to the environment. The seasonal and interannual patterns of temperature, salinity, nutrients, chlorophyll concentration and zooplankton abundance are described with data obtained between 1994 and 2003. Samples were collected every 10 days at a monitoring station in the Mallorca channel, an area with marked hydrographic variability in the Western Mediterranean. Mesoscale variability was also assessed using data from monthly sampling survey carried out between 1994 and 1999 in a three station transect located in the same study area. The copepods were the most abundant group with three higher peaks (March, May and September) distinguished during the annual cycle and a clear coastal-offshore decreasing gradient. Analysis of the zooplankton community revealed two distinct periods: the mixing period during winter and early spring, where copepods, siphonophores and ostracods were most abundant and, the stratified period characterised by an increase of cladocerans and meroplankton abundances. Remarkable interannual zooplankton variability was observed in relation to hydrographic regime with higher abundances of main groups during cool years, when northern Mediterranean waters prevailed in the area. The warmer years showed the lowest zooplankton abundances, associated with the inflow of less saline and nutrient-depleted Atlantic Waters. Moreover, the correlation found between copepod abundance and large scale climatic factors (e.g., NAO) suggested that they act as main driver of the zooplankton variability. Therefore, the seasonal but particularly the interannual variation observed in plankton abundance and structure patterns of the Balearic Sea seems to be highly modulated by large-scale forcing and can be considered an ideal place where to investigate potential consequences of global climate change.

  13. The contribution of zooplankton faecal pellets to deep-carbon transport in the Scotia Sea (Southern Ocean)

    NASA Astrophysics Data System (ADS)

    Manno, C.; Stowasser, G.; Enderlein, P.; Fielding, S.; Tarling, G. A.

    2015-03-01

    The northern Scotia Sea contains the largest seasonal uptake of atmospheric carbon dioxide yet measured in the Southern Ocean. This study examines one of the main routes by which this carbon fluxes to the deep ocean: through the production of faecal pellets (FPs) by the zooplankton community. Deep sediment traps were deployed at two sites with contrasting ocean productivity regimes (P3, naturally iron-fertilized, and P2, iron-limited) within the same water mass. The magnitude and seasonal pattern of particulate organic carbon (POC) and FPs in the traps was markedly different between the two sites. Maximum fluxes at P3 (22.91 mg C m-2 d-1; 2534 FP m-2 d1) were 1 order of magnitude higher than at P2 (4.01 mg C m-2 d-1; 915 FP m-2 d1, with flux at P3 exhibiting a double seasonal peak, compared to a single flatter peak at P2. The maximum contribution of FP carbon to the total amount of POC was twice as high at P3 (91%) compared to P2 (40%). The dominant FP category at P3 varied between round, ovoidal, cylindrical and tabular over the course of the year, while, at P2, ovoidal FPs were consistently dominant, always making up more than 60% of the FP assemblage. There was also a difference in the FP state between the two sites, with FPs being relatively intact at P3, while FPs were often fragmented with broken peritrophic membranes at P2. The exception was ovoidal FPs, which were relatively intact at both sites. Our observations suggest that there was a community shift from a herbivorous to an omnivorous diet from spring through to autumn at P3, while detritivores had a higher relative importance over the year at P2. Furthermore, the flux was mainly a product of the vertically migrating zooplankton community at P3, while the FP flux was more likely to be generated by deeper-dwelling zooplankton feeding on recycled material at P2. The results demonstrate that the feeding behaviour and vertical distribution of the zooplankton community plays a critical role in controlling

  14. ZOOPLANKTON SIZE-SPECTRA IN GREAT LAKES COASTAL WATERS

    EPA Science Inventory

    Zooplankton mean size and size-distribution are affected by planktivore pressure and potentially reflect the condition of trophic interactions and ecosystem health. We used an optical plankton counter (OPC) to survey and assess zooplankton size-spectra for twenty locations in Lak...

  15. Arctic complexity: a case study on diel vertical migration of zooplankton

    PubMed Central

    Berge, Jørgen; Cottier, Finlo; Varpe, Øystein; Renaud, Paul E.; Falk-Petersen, Stig; Kwasniewski, Sawomir; Griffiths, Colin; Søreide, Janne E.; Johnsen, Geir; Aubert, Anais; Bjærke, Oda; Hovinen, Johanna; Jung-Madsen, Signe; Tveit, Martha; Majaneva, Sanna

    2014-01-01

    Diel vertical migration (DVM) of zooplankton is a global phenomenon, characteristic of both marine and limnic environments. At high latitudes, patterns of DVM have been documented, but rather little knowledge exists regarding which species perform this ecologically important behaviour. Also, in the Arctic, the vertically migrating components of the zooplankton community are usually regarded as a single sound scattering layer (SSL) performing synchronized patterns of migration directly controlled by ambient light. Here, we present evidence for hitherto unknown complexity of Arctic marine systems, where zooplankton form multiple aggregations through the water column seen via acoustics as distinct SSLs. We show that while the initiation of DVM during the autumnal equinox is light mediated, the vertical positioning of the migrants during day is linked more to the thermal characteristics of water masses than to irradiance. During night, phytoplankton biomass is shown to be the most important factor determining the vertical positioning of all migrating taxa. Further, we develop a novel way of representing acoustic data in the form of a Sound Image (SI) that enables a direct comparison of the relative importance of each potential scatterer based upon the theoretical contribution of their backscatter. Based on our comparison of locations with contrasting hydrography, we conclude that a continued warming of the Arctic is likely to result in more complex ecotones across the Arctic marine system. PMID:25221372

  16. Grazing experiments and model simulations of the role of zooplankton in Phaeocystis food webs

    NASA Astrophysics Data System (ADS)

    Verity, P. G.

    2000-08-01

    A combined empirical and modelling study was conducted to further examine the potential importance of grazing by zooplankton in pelagic food webs in which Phaeocystis is a significant or dominant component. Laboratory experiments were designed to measure ingestion of Phaeocystis and other potential prey items which co-occur with Phaeocystis. Grazers included copepods and ciliates, and prey included Phaeocystis colonies and solitary cells, diatoms, ciliates, bacteria, and detritus. These data were expressed in the model currency of nitrogen units, and fit to hyperbolic tangent equations which included minimum prey thresholds. These equations and literature data were used to constrain a food web model whose purpose was to investigate trophic interactions rather than to mimic actual events. Nevertheless, the model output was similar to the general pattern and magnitude of development of Phaeocystis-diatom communities in some environments where they occur, e.g. north Norwegian waters. The model included three forms of nitrogen, three phytoplankton groups, bacteria, two zooplankton groups, and detritus, with detailed flows between compartments. An important component of the model was inclusion of variable prey preferences for zooplankton. The experiments and model simulations suggest several salient conclusions. Phaeocystis globosa colonies were eaten by a medium-sized copepod species, but ingestion appeared to be strongly dependent upon a proper size match between grazer and prey. If not, colonies were eaten little if at all. Phaeocystis solitary cells were ingested rapidly by ciliate microzooplankton, in agreement with prior literature observations. In contrast, detritus was eaten comparatively slowly by both ciliates and copepods. Both types of zooplankton exhibited apparent minimum prey thresholds below which grazing did not occur or was inconsequential. Model simulations implied that transitions between life cycle stages of Phaeocystis may potentially be important

  17. Seasonal zooplankton dynamics in Lake Michigan: disentangling impacts of resource limitation, ecosystem engineering, and predation during a critical ecosystem transition

    USGS Publications Warehouse

    Vanderploeg, Henry A.; Pothoven, Steven A.; Fahnenstiel, Gary L.; Cavaletto, Joann F.; Liebig, James R.; Stow, Craig Stow; Nalepa, Thomas F.; Madenjian, Charles P.; Bunnell, David B.

    2012-01-01

    We examined seasonal dynamics of zooplankton at an offshore station in Lake Michigan from 1994 to 2003 and 2007 to 2008. This period saw variable weather, declines in planktivorous fish abundance, the introduction and expansion of dreissenid mussels, and a slow decline in total phosphorus concentrations. After the major expansion of mussels into deep water (2007–2008), chlorophyll in spring declined sharply, Secchi depth increased markedly in all seasons, and planktivorous fish biomass declined to record-low levels. Overlaying these dramatic ecosystem-level changes, the zooplankton community exhibited complex seasonal dynamics between 1994–2003 and 2007–2008. Phenology of the zooplankton maximum was affected by onset of thermal stratification, but there was no other discernable effect due to temperature. Interannual variability in zooplankton biomass during 1994 and 2003 was strongly driven by planktivorous fish abundance, particularly age-0 and age-1 alewives. In 2007–2008, there were large decreases in Diacyclops thomasi and Daphnia mendotae possibly caused by food limitation as well as increased predation and indirect negative effects from increases in Bythotrephes longimanus abundance and in foraging efficiency associated with increased light penetration. The Bythotrephes increase was likely driven in part by decreased predation from yearling and older alewife. While there was a major decrease in epilimnetic–metalimnetic herbivorous cladocerans in 2007–2008, there was an increase in large omnivorous and predacious calanoid copepods, especially those in the hypolimnion. Thus, changes to the zooplankton community are the result of cascading, synergistic interactions, including a shift from vertebrate to invertebrate planktivory and mussel ecosystem impacts on light climate and chlorophyll.

  18. Zooplankton and the oceanography of the eastern tropical Pacific: A review

    NASA Astrophysics Data System (ADS)

    Fernández-Álamo, María Ana; Färber-Lorda, Jaime

    2006-05-01

    We review the spatial and temporal patterns of zooplankton in the eastern tropical Pacific Ocean and relationships with oceanographic factors that affect zooplankton distribution, abundance and trophic relationships. Large-scale spatial patterns of some zooplankton groups show broad coincidence with surface water masses, circulation, and upwelling regions, in agreement with an ecological and dynamic partitioning of the pelagic ecosystem. The papers reviewed and a new compilation of zooplankton volume data at large-scale show that abundance patterns of zooplankton biomass have their highest values in the upwelling regions, including the Gulf of Tehuantepec, the Costa Rica Dome, the equatorial cold tongue, and the coast of Peru. Some of the first studies of zooplankton vertical distribution were done in this region, and a general review of the topic is presented. The possible physiological implications of vertical migration in zooplankton and the main hypotheses are described, with remarks on the importance of the oxygen minimum zone (OMZ) as a barrier to both the vertical distribution and migration of zooplankton in the region. Recent results, using multiple-net gear, show that vertical distribution is more complex than previously thought. There are some well-adapted species that do live and migrate within the OMZ. Temporal patterns are reviewed and summarized with historical data. Seasonal variations in zooplankton biomass follow productivity cycles in upwelling areas. No zooplankton time series exist to resolve ENSO effects in oceanic regions, but some El Niño events have had effects in the Peru Current ecosystem. Multidecadal periods of up to 50 years show a shift from a warm sardine regime with a low zooplankton biomass to a cool anchovy regime in the eastern Pacific with higher zooplankton biomasses. However, zooplankton volume off Peru has remained at low values since the 1972 El Niño, a trend opposite to that of anchoveta biomass since 1984. Studies of

  19. Zooplankton variability and larval striped bass foraging: Evaluating potential match/mismatch regulation

    USGS Publications Warehouse

    Chick, J.H.; Van Den Avyle, M.J.

    1999-01-01

    We quantified temporal and spatial variability of zooplankton in three potential nursery sites (river, transition zone, lake) for larval striped bass (Morone saxatilis) in Lake Marion, South Carolina, during April and May 1993-1995. In two of three years, microzooplankton (rotifers and copepod nauplii) density was significantly greater in the lake site than in the river or transition zone. Macrozooplankton (>200 ??m) composition varied among the three sites in all years with adult copepods and cladocerans dominant at the lake, and juvenile Corbicula fluminea dominant at the river and transition zone. Laboratory feeding experiments, simulating both among-site (site treatments) and within-site (density treatments) variability, were conducted in 1995 to quantify the effects of the observed zooplankton variability on foraging success of larval striped bass. A greater proportion of larvae fed in the lake than in the river or transition-zone treatments across all density treatments: mean (x), 10x and 100x. Larvae also ingested significantly more dry mass of prey in the lake treatment in both the mean and 10x density treatments. Field zooplankton and laboratory feeding data suggest that both spatial and temporal variability of zooplankton influence larval striped bass foraging. Prey density levels that supported successful foraging in our feeding experiments occurred in the lake during late April and May in 1994 and 1995 but were never observed in the river or transition zone. Because the rivers flowing into Lake Marion are regulated, it may be possible to devise flow management schemes that facilitate larval transport to the lake and thereby increase the proportion of larvae matched to suitable prey resources.

  20. Multisensor sampling of pelagic ecosystem variables in a coastal environment to estimate zooplankton grazing impact

    NASA Astrophysics Data System (ADS)

    Sutton, Tracey; Hopkins, Thomas; Remsen, Andrew; Burghart, Scott

    2001-01-01

    Sampling was conducted on the west Florida continental shelf ecosystem modeling site to estimate zooplankton grazing impact on primary production. Samples were collected with the high-resolution sampler, a towed array bearing electronic and optical sensors operating in tandem with a paired net/bottle verification system. A close biological-physical coupling was observed, with three main plankton communities: 1. a high-density inshore community dominated by larvaceans coincident with a salinity gradient; 2. a low-density offshore community dominated by small calanoid copepods coincident with the warm mixed layer; and 3. a high-density offshore community dominated by small poecilostomatoid and cyclopoid copepods and ostracods coincident with cooler, sub-pycnocline oceanic water. Both high-density communities were associated with relatively turbid water. Applying available grazing rates from the literature to our abundance data, grazing pressure mirrored the above bio-physical pattern, with the offshore sub-pycnocline community contributing ˜65% of grazing pressure despite representing only 19% of the total volume of the transect. This suggests that grazing pressure is highly localized, emphasizing the importance of high-resolution sampling to better understand plankton dynamics. A comparison of our grazing rate estimates with primary production estimates suggests that mesozooplankton do not control the fate of phytoplankton over much of the area studied (<5% grazing of daily primary production), but "hot spots" (˜25-50% grazing) do occur which may have an effect on floral composition.

  1. Neustonic microplastic and zooplankton in the North Western Mediterranean Sea.

    PubMed

    Collignon, Amandine; Hecq, Jean-Henri; Glagani, François; Voisin, Pierre; Collard, France; Goffart, Anne

    2012-04-01

    Neustonic microplastic and zooplankton abundance was determined in the North Western Mediterranean Sea during a summer cruise between July 9th and August 6th 2010, with a break between July 22 th and 25th due to a strong wind event. Ninety percent of the 40 stations contained microplastic particles (size 0.3-5mm) of various compositions: e.g., filaments, polystyrene, thin plastic films. An average concentration of 0.116 particles/m(2) was observed. The highest abundances (>0.36 particles/m(2)) were observed in shelf stations. The neustonic plastic particles concentrations were 5 times higher before than after the strong wind event which increased the mixing and the vertical repartition of plastic particles in the upper layers of the water column. The values rise in the same order of magnitude than in the North Pacific Gyre. The average ratio between microplastics and mesozooplankton weights was 0.5 for the whole survey and might induce a potential confusion for zooplankton feeders. Copyright © 2012 Elsevier Ltd. All rights reserved.

  2. Ecological value of macrophyte cover in creating habitat for microalgae (diatoms) and zooplankton (rotifers and crustaceans) in small field and forest water bodies.

    PubMed

    Celewicz-Gołdyn, Sofia; Kuczyńska-Kippen, Natalia

    2017-01-01

    Due to their small area and shallow depth ponds are usually treated as a single sampling unit, while various microhabitats offer different environmental conditions. Thus, we tested the effect of different habitat types typically found within small ponds on the microalgae and zooplankton communities. We found that submerged macrophytes have the strongest impact on microalgae and zooplankton communities out of all the analysed habitats. Some epontic diatoms (e.g. Fragilaria dilatata, Cymbella affinis) and littoral-associated zooplankton species (e.g. Simocephalus vetulus, Lecane bulla) were significantly related to elodeids. However, pelagic species (e.g. bosminids) preferred less complex helophytes, which suggests that the most heterogeneous elodeid habitats were not an anti-predator shelter for cladocerans. Selection of different macrophyte types by taxonomically various organisms suggests that it is not only macrophyte cover that is desired for healthy aquatic environment but that a level of habitat mosaic is required to ensure the well-being of aquatic food webs. Species-specific preferences for different types of macrophytes indicate the high ecological value of macrophyte cover in ponds and a potential direction for the management of small water bodies towards maintaining a great variation of aquatic plants. Moreover, the type of surrounding landscape, reflecting human-induced disturbance (28 field ponds) and natural catchment (26 forest ponds), significantly influenced only zooplankton, while diatoms were affected indirectly through the level of conductivity. Nutrient overload (higher content of TRP) and increased conductivity in the field landscape contributed to a rise in microalgae (e.g. Amphora pediculus, Gomphonema parvulum) and zooplankton (e.g. Thermocyclops oithonoides, Eubosmina coregoni) abundance. An awareness of the responses of both components of plankton communities to environmental factors is necessary for maintaining the good state of small

  3. Zooplankton size selection relative to gill raker spacing in rainbow trout

    USGS Publications Warehouse

    Budy, P.; Haddix, T.; Schneidervin, R.

    2005-01-01

    Rainbow trout Oncorhynchus mykiss are one of the most widely stocked salmonids worldwide, often based on the assumption that they will effectively utilize abundant invertebrate food resources. We evaluated the potential for feeding morphology to affect prey selection by rainbow trout using a combination of laboratory feeding experiments and field observations in Flaming Gorge Reservoir, Utah-Wyoming. For rainbow trout collected from the reservoir, inter-gill raker spacing averaged 1.09 mm and there was low variation among fish overall (SD = 0.28). Ninety-seven percent of all zooplankton observed in the diets of rainbow trout collected in the reservoir were larger than the interraker spacing, while only 29% of the zooplankton found in the environment were larger than the interraker spacing. Over the size range of rainbow trout evaluated here (200-475 mm), interraker spacing increased moderately with increasing fish length; however, the size of zooplankton found in the diet did not increase with increasing fish length. In laboratory experiments, rainbow trout consumed the largest zooplankton available; the mean size of zooplankton observed in the diets was significantly larger than the mean size of zooplankton available. Electivity indices for both laboratory and field observations indicated strong selection for larger-sized zooplankton. The size threshold at which electivity switched from selection against smaller-sized zooplankton to selection for larger-sized zooplankton closely corresponded to the mean interraker spacing for both groups (???1-1.2 mm). The combination of results observed here indicates that rainbow trout morphology limits the retention of different-sized zooplankton prey and reinforces the importance of understanding how effectively rainbow trout can utilize the type and sizes of different prey available in a given system. These considerations may improve our ability to predict the potential for growth and survival of rainbow trout within and

  4. Pyridine-type alkaloid composition affects bacterial community composition of floral nectar

    PubMed Central

    Aizenberg-Gershtein, Yana; Izhaki, Ido; Santhanam, Rakesh; Kumar, Pavan; Baldwin, Ian T.; Halpern, Malka

    2015-01-01

    Pyridine-type alkaloids are most common in Nicotiana species. To study the effect of alkaloid composition on bacterial community composition in floral nectar, we compared the nicotine-rich wild type (WT) N. attenuata, the nicotine biosynthesis-silenced N. attenuata that was rich in anatabine and the anabasine-rich WT N. glauca plants. We found that the composition of these secondary metabolites in the floral nectar drastically affected the bacterial community richness, diversity and composition. Significant differences were found between the bacterial community compositions in the nectar of the three plants with a much greater species richness and diversity in the nectar from the transgenic plant. The highest community composition similarity index was detected between the two wild type plants. The different microbiome composition and diversity, caused by the different pyridine-type alkaloid composition, could modify the nutritional content of the nectar and consequently, may contribute to the change in the nectar consumption and visitation. These may indirectly have an effect on plant fitness. PMID:26122961

  5. Pyridine-type alkaloid composition affects bacterial community composition of floral nectar.

    PubMed

    Aizenberg-Gershtein, Yana; Izhaki, Ido; Santhanam, Rakesh; Kumar, Pavan; Baldwin, Ian T; Halpern, Malka

    2015-06-30

    Pyridine-type alkaloids are most common in Nicotiana species. To study the effect of alkaloid composition on bacterial community composition in floral nectar, we compared the nicotine-rich wild type (WT) N. attenuata, the nicotine biosynthesis-silenced N. attenuata that was rich in anatabine and the anabasine-rich WT N. glauca plants. We found that the composition of these secondary metabolites in the floral nectar drastically affected the bacterial community richness, diversity and composition. Significant differences were found between the bacterial community compositions in the nectar of the three plants with a much greater species richness and diversity in the nectar from the transgenic plant. The highest community composition similarity index was detected between the two wild type plants. The different microbiome composition and diversity, caused by the different pyridine-type alkaloid composition, could modify the nutritional content of the nectar and consequently, may contribute to the change in the nectar consumption and visitation. These may indirectly have an effect on plant fitness.

  6. Dynamics of suprabenthos-zooplankton communities around the Balearic Islands (western Mediterranean): Influence of environmental variables and effects on the biological cycle of Aristeus antennatus

    NASA Astrophysics Data System (ADS)

    Cartes, J. E.; Madurell, T.; Fanelli, E.; López-Jurado, J. L.

    salinity close to the bottom, suggesting a link between suprabenthos abundance and changes in the oceanographic condition of water masses close to the bottom. It is suggested that a higher suprabenthos biomass recorded off Sóller in comparison to that off Cabrera in June could, in turn, be related to a seasonal inflow of Levantine Intermediate Water (LIW) in April-June in this area at mid bathyal depths (350-650 m). This trend would be based on: 1) it was evident only at mid-slope depths between 350-750 m, coinciding with the LIW distribution, and 2) it was not recorded among zooplankton (collected throughout the water column). The possible effect of the fluctuations of suprabenthos and zooplankton on higher trophic levels has been explored studying the diet and food consumption rates of the red shrimp Aristeus antennatus, as indicator species by its dominance in bathyal communities. A. antennatus increased its food consumption from February to April-June 2004 off Sóller, which in the case of large (CL > 40 mm) specimens was found in both areas. In addition, there was a shift of diet from winter to spring-early summer. In this last period, A. antennatus preyed upon euphausiids and mesopelagic decapods and fish, while benthos (e.g. polychaetes and bivalves) decreased in the diet. This indicates an increase in the food consumption and probably in the caloric content of the diet in pre-spawning females in April-June 2004, which is synchronized with the period when gonad development begins in A. antennatus females (May-June). Anyway, macrozooplankton, and not suprabenthos, is crucial as a high energetic food source in the coupling between food intake and reproduction in the red shrimp.

  7. Plankton dynamics and zooplankton carcasses in a mid-latitude estuary and their contributions to the local particulate organic carbon pool

    NASA Astrophysics Data System (ADS)

    Giesecke, R.; Vallejos, T.; Sanchez, M.; Teiguiel, K.

    2017-01-01

    Estuaries are among the most productive aquatic ecosystems in coastal areas. Their productivity is linked to the formation of fronts generating mixing and retention of nutrients that can be used by autotrophs. Estuaries exhibit strong thermoclines and haloclines that may significantly affect zooplankton survival, while producing carcasses that could act as an alternative pathway of particulate organic carbon recycling. We investigated the in situ abundance of dead mero- and holozooplankton along the Valdivia River estuary, south-central Chile, during contrasting fresh water discharge conditions (summer, winter and spring), including the potential contribution of zooplankton carcasses to the particulate organic carbon standing stock along the estuary. Zooplankton samples were collected at four stations along the estuary during high tide at the surface, in the pycnocline and below the pycnocline. During autumn and winter the zooplankton community was mostly dominated by copepods, while during summer barnacle nauplii outnumbered copepods fourfold on average. During this study 29.5%±1.8% S.E. of the net-captured zooplankton community, including Acartia tonsa, Paracalanus spp., Oikopleura spp., copepod nauplii, Podon spp. and barnacle nauplii, appeared to have been dead at collection. Highest overall mortality occurred in winter (44±3.1% S.E.), with lower mortality during spring (26±3.8% S.E.) and summer (19±2.7% S.E.). The instantaneous mortality of copepods (Paracalanus spp. and A. tonsa) and copepod naupliar stages was always greater at the surface, associated with brackish water, while dead barnacle nauplii were usually distributed homogenously in the water column. The zooplankton carcass standing stock averaged 0.2 mg C m-3 (in spring and winter) contributing to 0.03-0.22% of the POC produced in the estuary, while in summer carcasses reached up to 2.99 mg C m-3 with a contribution up to 0.87% of the POC. The summer contribution is linked to the presence of

  8. Zooplankton intermittency and turbulence

    NASA Astrophysics Data System (ADS)

    Schmitt, François G.

    2010-05-01

    Planktonic organisms usually live in a turbulent world. Since marine turbulence is characterized by very high Reynolds numbers, it possesses very intermittent fluctuations which in turn affect marine life. We consider here such influence on zooplankton on 2 aspects. First we consider zooplankton motion in the lab. Many copepods display swimming abilities. More and more species have been recently recorded using normal or high speed cameras, and many trajectories have been extracted from these movies and are now available for analysis. These trajectories can be complex, stochastic, with random switching from low velocity to high velocity events and even jumps. These complex trajectories show that an adequate modeling is necessary to understand and characterize them. Here we review the results published in the literature on copepod trajectories. We discuss the random walk, Levy walk modeling and introduce also multifractal random walks. We discuss the way to discriminate between these different walks using experimental data. Stochastic simulations will be performed to illustrate the different families. Second, we consider zooplankton contact rates in the framework of intermittent turbulence. Intermittency may have influence on plankton contact rates. We consider the Particle Stokes number of copepods, in a intermediate dissipation range affected by intermittent fluctuations. We show that they may display preferential concentration effects, and we consider the influence on contact rates of this effect in the intermediate dissipation range.

  9. Drake Passage-Antarctic Peninsula Ecosystem Research: Spring and Fall Zooplankton and Seabird Assemblages

    NASA Astrophysics Data System (ADS)

    Loeb, V. J.; Chereskin, T. K.; Santora, J. A.

    2016-02-01

    Acoustic Doppler Current Profiler (ADCP) records from multiple "L.M. Gould" supply transits of Drake Passage from 1999 to present demonstrate spatial and temporal (diel, seasonal, annual and longer term) variability in acoustics backscattering. Acoustics backscattering strength in the upper water column corresponds to zooplankton and nekton biomass that relates to seabird and mammal distribution and abundance. Recent results indicate that interannual variability in backscattering strength is correlated to climate indices. The interpretation of these ecological changes is severely limited because the sound scatterers previously had not been identified and linkages to upper trophic level predators are unknown. Net-tows, depth-referenced underwater videography and seabird/mammal visual surveys during spring 2014 and fall 2015 transits provided information on the taxonomic-size composition, distribution, aggregation and behavioral patterns of dominant ADCP backscattering organisms and relate these to higher level predator populations. The distribution and composition of zooplankton species and seabird assemblages conformed to four biogeographic regions. Areas of elevated secondary productivity coincided with increased ADCP target strength with highest concentrations off Patagonia and Antarctic Peninsula and secondary peaks around the Polar Front. Small sized zooplankton taxa dominated north of the Polar Front while larger taxa dominated to the south. Regionally important prey items likely are: copepods, amphipods, small euphausiids and fish (Patagonia); copepods, myctophids, shelled pteropods and squid (Polar Front); large euphausiids (Antarctic Peninsula). This study demonstrates that biological observations during "L.M. Gould" supply transits greatly augment the value of routinely collected ADCP and XBT data and provide basic information relevant to the impacts of climate change in this rapidly warming portion of the Southern Ocean

  10. Multi-nutrient, multi-group model of present and future oceanic phytoplankton communities

    NASA Astrophysics Data System (ADS)

    Litchman, E.; Klausmeier, C. A.; Miller, J. R.; Schofield, O. M.; Falkowski, P. G.

    2006-11-01

    Phytoplankton community composition profoundly affects patterns of nutrient cycling and the dynamics of marine food webs; therefore predicting present and future phytoplankton community structure is crucial to understand how ocean ecosystems respond to physical forcing and nutrient limitations. We develop a mechanistic model of phytoplankton communities that includes multiple taxonomic groups (diatoms, coccolithophores and prasinophytes), nutrients (nitrate, ammonium, phosphate, silicate and iron), light, and a generalist zooplankton grazer. Each taxonomic group was parameterized based on an extensive literature survey. We test the model at two contrasting sites in the modern ocean, the North Atlantic (North Atlantic Bloom Experiment, NABE) and subarctic North Pacific (ocean station Papa, OSP). The model successfully predicts general patterns of community composition and succession at both sites: In the North Atlantic, the model predicts a spring diatom bloom, followed by coccolithophore and prasinophyte blooms later in the season. In the North Pacific, the model reproduces the low chlorophyll community dominated by prasinophytes and coccolithophores, with low total biomass variability and high nutrient concentrations throughout the year. Sensitivity analysis revealed that the identity of the most sensitive parameters and the range of acceptable parameters differed between the two sites. We then use the model to predict community reorganization under different global change scenarios: a later onset and extended duration of stratification, with shallower mixed layer depths due to increased greenhouse gas concentrations; increase in deep water nitrogen; decrease in deep water phosphorus and increase or decrease in iron concentration. To estimate uncertainty in our predictions, we used a Monte Carlo sampling of the parameter space where future scenarios were run using parameter combinations that produced acceptable modern day outcomes and the robustness of the

  11. Is Ambient Light during the High Arctic Polar Night Sufficient to Act as a Visual Cue for Zooplankton?

    PubMed

    Cohen, Jonathan H; Berge, Jørgen; Moline, Mark A; Sørensen, Asgeir J; Last, Kim; Falk-Petersen, Stig; Renaud, Paul E; Leu, Eva S; Grenvald, Julie; Cottier, Finlo; Cronin, Heather; Menze, Sebastian; Norgren, Petter; Varpe, Øystein; Daase, Malin; Darnis, Gerald; Johnsen, Geir

    2015-01-01

    The light regime is an ecologically important factor in pelagic habitats, influencing a range of biological processes. However, the availability and importance of light to these processes in high Arctic zooplankton communities during periods of 'complete' darkness (polar night) are poorly studied. Here we characterized the ambient light regime throughout the diel cycle during the high Arctic polar night, and ask whether visual systems of Arctic zooplankton can detect the low levels of irradiance available at this time. To this end, light measurements with a purpose-built irradiance sensor and coupled all-sky digital photographs were used to characterize diel skylight irradiance patterns over 24 hours at 79°N in January 2014 and 2015. Subsequent skylight spectral irradiance and in-water optical property measurements were used to model the underwater light field as a function of depth, which was then weighted by the electrophysiologically determined visual spectral sensitivity of a dominant high Arctic zooplankter, Thysanoessa inermis. Irradiance in air ranged between 1-1.5 x 10-5 μmol photons m-2 s-1 (400-700 nm) in clear weather conditions at noon and with the moon below the horizon, hence values reflect only solar illumination. Radiative transfer modelling generated underwater light fields with peak transmission at blue-green wavelengths, with a 465 nm transmission maximum in shallow water shifting to 485 nm with depth. To the eye of a zooplankter, light from the surface to 75 m exhibits a maximum at 485 nm, with longer wavelengths (>600 nm) being of little visual significance. Our data are the first quantitative characterisation, including absolute intensities, spectral composition and photoperiod of biologically relevant solar ambient light in the high Arctic during the polar night, and indicate that some species of Arctic zooplankton are able to detect and utilize ambient light down to 20-30m depth during the Arctic polar night.

  12. From the epipelagic zone to the abyss: Trophic structure at two seamounts in the subtropical and tropical Eastern Atlantic - Part I zooplankton and micronekton

    NASA Astrophysics Data System (ADS)

    Denda, Anneke; Stefanowitsch, Benjamin; Christiansen, Bernd

    2017-12-01

    Specific mechanisms, driving trophic interactions within the pelagic community may be highly variable in different seamount systems. This study investigated the trophic structure of zooplankton and micronekton above and around Ampère and Senghor, two shallow seamounts in the subtropical and tropical Eastern Atlantic, and over the adjacent abyssal plains. For the identification of food sources and trophic positions stable isotope ratios (δ13C and δ15N) were used. δ13C ranged from -24.7‰ to -15.0‰ and δ15N covered a total range of 0.9-15.9‰. Based on epipelagic particulate organic matter, zooplankton and micronekton usually occupied the 1st-3rd trophic level, including herbivorous, omnivorous and carnivorous taxa. δ13C and δ15N values were generally lower in zooplankton and micronekton of the subtropical waters as compared to the tropical region, due to the differing nutrient availability and phytoplankton communities. Correlations between δ13C and δ15N values of particulate organic matter, zooplankton, micronekton and benthopelagic fishes suggest a linear food chain based on a single energy source from primary production for Ampère Seamount, but no evidence was found for an autochthonus seamount production as compared to the open ocean reference site. Between Senghor Seamount and the open ocean δ13C signatures indicate that hydrodynamic effects at seamounts may modify the energy supply at times, but evidence for a seamount effect on the trophic structure of the pelagic communities was weak, which supports the assumption that seamount communities rely to a large extent on advected food sources.

  13. The contribution of zooplankton faecal pellets to deep carbon transport in the Scotia Sea (Southern Ocean)

    NASA Astrophysics Data System (ADS)

    Manno, C.; Stowasser, G.; Enderlein, P.; Fielding, S.; Tarling, G. A.

    2014-11-01

    The northern Scotia Sea contains the largest seasonal uptake of atmospheric carbon dioxide yet measured in the Southern Ocean. This study examines one of the main routes by which this carbon fluxes to the deep ocean, through the production of faecal pellets (FPs) by the zooplankton community. Deep sediment traps were deployed in two sites with contrasting ocean productivity regimes (P3, naturally iron-fertilized and P2, iron-limited), within the same water mass. The magnitude and seasonal pattern of particulate organic carbon (POC) and FPs in the traps was markedly different between the two sites. Maximum fluxes at P3 (22.91 mg C m-2 d-1; 2534 × 10 FP m-2 d-1) were an order of magnitude higher than at P2 (4.01 mg C m-2 d-1; 915 × 10 FP m-2 d-1), with flux at P3 exhibiting a double seasonal peak, compared to a single flatter peak at P2. The maximum contribution of FP carbon to the total amount of POC was twice as high at P3 (91%) compared to P2 (40%). The dominant FP category at P3 varied between round, ovoidal, cylindrical and tabular over the course of the year while, at P2, ovoidal FPs were consistently dominant, always making up more than 60% of the FP assemblage. There was also a difference in the FP state between the two sites, with FPs being relatively intact at P3, while FPs were often fragmented with broken peritrophic membranes at P2. The exception was ovoidal FPs, which were relatively intact at both sites. Our observations suggest that there was community shift from an herbivorous to an omnivorous diet from spring through to autumn at P3 while detritivores had a higher relative importance over the year at P2. Furthermore, the flux was mainly a product of the vertically migrating zooplankton community at P3 while the FP flux was more likely to be generated by deeper-dwelling zooplankton feeding on recycled material at P2. The results demonstrate that the feeding behavior and vertical distribution of the zooplankton community plays a critical role in

  14. Aquatic community structure in Mediterranean edge-of-field waterbodies as explained by environmental factors and the presence of pesticide mixtures.

    PubMed

    Pereira, Ana Santos; Dâmaso-Rodrigues, Maria Luísa; Amorim, Ana; Daam, Michiel A; Cerejeira, Maria José

    2018-06-16

    Studies addressing the predicted effects of pesticides in combination with abiotic and biotic factors on aquatic biota in ditches associated with typical Mediterranean agroecosystems are scarce. The current study aimed to evaluate the predicted effects of pesticides along with environmental factors and biota interactions on macroinvertebrate, zooplankton and phytoplankton community compositions in ditches adjacent to Portuguese maize and tomato crop areas. Data was analysed with the variance partitioning procedure based on redundancy analysis (RDA). The total variance in biological community composition was divided into the variance explained by the multi-substance potentially affected fraction [(msPAF) arthropods and primary producers], environmental factors (water chemistry parameters), biotic interactions, shared variance, and unexplained variance. The total explained variance reached 39.4% and the largest proportion of this explained variance was attributed to msPAF (23.7%). When each group (phytoplankton, zooplankton and macroinvertebrates) was analysed separately, biota interactions and environmental factors explained the largest proportion of variance. Results of this study indicate that besides the presence of pesticide mixtures, environmental factors and biotic interactions also considerably influence field freshwater communities. Subsequently, to increase our understanding of the risk of pesticide mixtures on ecosystem communities in edge-of-field water bodies, variations in environmental and biological factors should also be considered.

  15. ANNUAL CYCLE OF PERIPHYTON, ZOOPLANKTON, AND WATER QUALITY PARAMETERS ALONG A 5 STATION TRANSECT OF ESCAMBIA BAY, FL

    EPA Science Inventory

    Phytoplankton, zooplankton and water quality parameters were monitored monthly along a 5-station transect in Escambia Bay (Pensacola, FL) from fall 1999 to fall 2000. To provide insight into nutrient processing in Escambia Bay and effects of grazers on phytoplankton community st...

  16. Reduced growth and survival of larval razorback sucker fed selenium-laden zooplankton

    USGS Publications Warehouse

    Hamilton, Steven J.; Buhl, Kevin J.; Bullard, Fern A.; McDonald, Susan

    2005-01-01

    Four groups of larval razorback sucker, an endangered fish, were exposed to selenium-laden zooplankton and survival, growth, and whole-body residues were measured. Studies were conducted with 5, 10, 24, and 28-day-old larvae fed zooplankton collected from six sites adjacent to the Green River, Utah. Water where zooplankton were collected had selenium concentrations ranging from <0.4 to 78 μg/L, and concentrations in zooplankton ranged from 2.3 to 91 μg/g dry weight. Static renewal tests were conducted for 20 to 25 days using reference water with selenium concentrations of <1.1 μg/L. In all studies, 80–100% mortality occurred in 15–20 days. In the 28-day-old larvae, fish weight was significantly reduced 25% in larvae fed zooplankton containing 12 μg/g selenium. Whole-body concentrations of selenium ranged from 3.7 to 14.3 μg/g in fish fed zooplankton from the reference site (Sheppard Bottom pond 1) up to 94 μg/g in fish fed zooplankton from North Roadside Pond. Limited information prior to the studies suggested that the Sheppard pond 1 site was relatively clean and suitable as a reference treatment; however, the nearly complete mortality of larvae and elevated concentrations of selenium in larvae and selenium and other elements in zooplankton indicated that this site was contaminated with selenium and other elements. Selenium concentrations in whole-body larvae and in zooplankton from all sites were close to or greater than toxic thresholds where adverse effects occur in fish. Delayed mortality occurred in larvae fed the two highest selenium concentrations in zooplankton and was thought due to an interaction with other elements.

  17. Exposure and effects of sediment-spiked fludioxonil on macroinvertebrates and zooplankton in outdoor aquatic microcosms.

    PubMed

    Yin, Xiao H; Brock, Theo C M; Barone, Lidia E; Belgers, J Dick M; Boerwinkel, Marie-Claire; Buijse, Laura; van Wijngaarden, René P A; Hamer, Mick; Roessink, Ivo

    2018-01-01

    Information from effects of pesticides in sediments at an ecosystem level, to validate current and proposed risk assessment procedures, is scarce. A sediment-spiked outdoor freshwater microcosm experiment was conducted with fludioxonil (lipophilic, non-systemic fungicide) to study exposure dynamics and treatment-related responses of benthic and pelagic macroinvertebrates and zooplankton. Besides blank control and solvent control systems the experiment had six different treatment levels (1.7-614mga.s./kg dry sediment) based around the reported 28-d No Observed Effect Concentration (NOEC) for Chironomus riparius (40mga.s./kg dry sediment). Twelve systems were available per treatment of which four were sacrificed on each of days 28, 56 and 84 after microcosm construction. Fludioxonil persisted in the sediment and mean measured concentrations were 53-82% of the initial concentration after 84days. The dissipation rate increased with the treatment level. Also exposure concentrations in overlying water were long-term, with highest concentrations 28days after initiation of the experiment. Sediment-dwelling Oligochaeta and pelagic Rotifera and Cladocera showed the most pronounced treatment-related declines. The most sensitive sediment-dwelling oligochaete was Dero digitata (population NOEC 14.2mga.s./kg dry sediment). The same NOEC was calculated for the sediment-dwelling macroinvertebrate community. The most sensitive zooplankton species was the cladoceran Diaphanosoma brachyurum (NOEC of 1.6μga.s./L in overlying water corresponding to 5.0mga.s./kg dry sediment). At the two highest treatments several rotifer taxa showed a pronounced decrease, while the zooplankton community-level NOEC was 5.6μga.s./L (corresponding to 14.2mga.s./kg dry sediment). Zooplankton taxa calanoid Copepoda and Daphnia gr. longispina showed a pronounced treatment-related increase (indirect effects). Consequently, an assessment factor of 10 to the chronic laboratory NOECs of Chironomus riparius

  18. Effects of alewife predation on zooplankton populations in Lake Michigan

    USGS Publications Warehouse

    Wells, LaRue

    1970-01-01

    The zooplankton populations in southeastern Lake Michigan underwent striking, size-related changes between 1954 and 1966. Forms that decline sharply were the largest cladocerans (Leptodora kindtii, Daphnia galeata, and D. retrocurva), the largest calanoid copepods (Limnocalanus macrurus, Epischura lacustris, and Diaptomus sicilis), and the largest cyclopoid copepod (Mesocyclops edax). Two of these, D. galeata and M. edax (both abundant in 1954), became extremely rare. Certain medium-sized or small species increased in numbers: Daphnia longiremis, Holopedium gibberum, Polyphemus pediculus, Bosmina longirostris, Bosmina coregoni, Ceriodaphnia sp., Cyclops bicuspidatus, Cyclops vernalis, and Diaptomus ashlandi. Evidence is strong that the changes were due to selective predation by alewives. The alewife was uncommon in southeastern Lake Michigan in 1954 but had increased to enormous proportions by 1966; there was a massive dieoff in spring 1967, and abundance remained relatively low in 1968. The composition of zooplankton populations in 1968 generally had shifted back toward that of 1954, although D. galeata and M. edax remained rare. The average size, and size at onset of maturity, of D. retrocurva decreased noticeably between 1954 and 1966 but increased between 1966 and 1968.

  19. Bioenergetics modeling of the annual consumption of zooplankton by pelagic fish feeding in the Northeast Atlantic

    PubMed Central

    Utne, Kjell Rong; Jansen, Teunis; Huse, Geir

    2018-01-01

    The present study uses bioenergetics modeling to estimate the annual consumption of the main zooplankton groups by some of the most commercially important planktivorous fish stocks in the Northeast Atlantic, namely Norwegian spring-spawning (NSS) herring (Clupea harengus), blue whiting (Micromesistius poutassou) and NEA mackerel (Scomber scombrus). The data was obtained from scientific surveys in the main feeding area (Norwegian Sea) in the period 2005–2010. By incorporating novel information about ambient temperature, seasonal growth and changes in the diet from stomach content analyses, annual consumption of the different zooplankton groups by pelagic fish is estimated. The present study estimates higher consumption estimates than previous studies for the three species and suggests that fish might have a greater impact on the zooplankton community as foragers. This way, NEA mackerel, showing the highest daily consumption rates, and NSS herring, annually consume around 10 times their total biomass, whereas blue whiting consume about 6 times their biomass in zooplankton. The three species were estimated to consume an average of 135 million (M) tonnes of zooplankton each year, consisting of 53–85 M tonnes of copepods, 20–32 M tonnes of krill, 8–42 M tonnes of appendicularians and 0.2–1.2 M tonnes of fish, depending on the year. For NSS herring and NEA mackerel the main prey groups are calanoids and appendicularians, showing a peak in consumption during June and June–July, respectively, and suggesting high potential for inter-specific feeding competition between these species. In contrast, blue whiting maintain a low consumption rate from April to September, consuming mainly larger euphausiids. Our results suggest that the three species can coexist regardless of their high abundance, zooplankton consumption rates and overlapping diet. Accordingly, the species might have niche segregation, as they are species specific, showing annual and inter

  20. Migrant biomass and respiratory carbon flux by zooplankton and micronekton in the subtropical northeast Atlantic Ocean (Canary Islands)

    NASA Astrophysics Data System (ADS)

    Ariza, A.; Garijo, J. C.; Landeira, J. M.; Bordes, F.; Hernández-León, S.

    2015-05-01

    Diel Vertical Migration (DVM) in marine ecosystems is performed by zooplankton and micronekton, promoting a poorly accounted export of carbon to the deep ocean. Major efforts have been made to estimate carbon export due to gravitational flux and to a lesser extent, to migrant zooplankton. However, migratory flux by micronekton has been largely neglected in this context, due to its time-consuming and difficult sampling. In this paper, we evaluated gravitational and migratory flux due to the respiration of zooplankton and micronekton in the northeast subtropical Atlantic Ocean (Canary Islands). Migratory flux was addressed by calculating the biomass of migrating components and measuring the electron transfer system (ETS) activity in zooplankton and dominant species representing micronekton (Euphausia gibboides, Sergia splendens and Lobianchia dofleini). Our results showed similar biomass in both components. The main taxa contributing to DVM within zooplankton were juvenile euphausiids, whereas micronekton were mainly dominated by fish, followed by adult euphausiids and decapods. The contribution to respiratory flux of zooplankton (3.4 ± 1.9 mg C m-2 d-1) was similar to that of micronekton (2.9 ± 1.0 mg C m-2 d-1). In summary, respiratory flux accounted for 53% (range 23-71) of the gravitational flux measured at 150 m depth (11.9 ± 5.8 mg C m-2 d-1). However, based on larger migratory ranges and gut clearance rates, micronekton are expected to be the dominant component that contributes to carbon export in deeper waters. Micronekton estimates in this paper as well as those in existing literature, although variable due to regional differences and difficulties in calculating their biomass, suggest that carbon fluxes driven by this community are important for future models of the biological carbon pump.

  1. Global dynamics of zooplankton and harmful algae in flowing habitats

    NASA Astrophysics Data System (ADS)

    Hsu, Sze-Bi; Wang, Feng-Bin; Zhao, Xiao-Qiang

    This paper is devoted to the study of two advection-dispersion-reaction models arising from the dynamics of harmful algae and zooplankton in flowing-water habitats where a main channel is coupled to a hydraulic storage zone, representing an ensemble of fringing coves on the shoreline. For the system modeling the dynamics of algae and their toxin that contains little limiting nutrient, we establish a threshold type result on the global attractivity in terms of the basic reproduction ratio for algae. For the model with zooplankton that eat the algae and are inhibited by the toxin produced by algae, we show that there exists a coexistence steady state and the zooplankton is uniformly persistent provided that two basic reproduction ratios for algae and zooplankton are greater than unity.

  2. Under the Scope: Bringing Zooplankton Research into the K-12 Classroom

    NASA Astrophysics Data System (ADS)

    Cohen, J.; Petrone, C.; Wickline, A.

    2016-02-01

    Despite their small size, zooplankton are dynamic and engaging animals when viewed by researchers, teachers, and students alike. Recognizing this, we are working with K-12 teachers to develop web-based resources for using zooplankton in the classroom. This outreach effort is part of a Delaware Sea Grant-funded research project studying seasonal dynamics of zooplankton in Delaware Bay. The research team, in collaboration with a marine education specialist, initially created a website (www.underthescope.udel.edu) containing: background information on zooplankton and the research project, a magnification tool, an identification tool, and education modules that facilitate directed use of the website content and tools. Local teachers (elementary through high school) were then hosted for a workshop to engage in zooplankton sampling using methods employed in the research project, including zooplankton tows and semi-autonomous identification using a ZooScan imaging system. Teachers then explored the website, evaluating its design, content, and usability for their particular grade level. Specific suggestions from the evaluation were incorporated into the website, with additional implementation planned over the next year. This teacher- researcher partnership was successful in developing the digital resource itself, in building excitement and capacity among a cohort of teachers, and in establishing relationships among teachers and researchers to facilitate adding new dimensions to the collaboration. The latter will include zooplankton sampling by school groups, researcher optical scanning of samples with ZooScan, and subsequent student analysis and reporting on their data.

  3. Small-scale zooplankton aggregations at the front of a Kuroshio warm-core ring

    NASA Astrophysics Data System (ADS)

    Yamamoto, Tamiji; Nishizawa, Satoshi

    1986-11-01

    A Longhurst-Hardy Plankton Recorder was used to study the small-scale zooplankton distribution across the front of a Kuroshio warm-core ring in June 1979. Zooplankton were strongly aggregated in the frontal region; patches of zooplankton and phytoplankton were spatially separated. A major part of the zooplankton assemblage consisted of neritic forms such as cladocerans and indicator species of the cold Oyashio water. This implies that lateral entrainment of coastal waters, which is directly influenced by the Oyashio, was an important factor in the formation of the aggregations at the Kuroshio warm-core ring front. Variation in the distribution of abundance peaks of individual zooplankton species was also observed. Futhermore, zooplankton showed more intensive non-randomness (aggregation) than phytoplankton and non-motile euphausiid's eggs. Thus, biological processes, such as motility and prey-predator interaction, also appeared to be regulating the patchiness.

  4. Pilot Study on Potential Impacts of Fisheries-Induced Changes in Zooplankton Mortality on Marine Biogeochemistry

    NASA Astrophysics Data System (ADS)

    Getzlaff, Julia; Oschlies, Andreas

    2017-11-01

    In this pilot study we link the yield of industrial fisheries to changes in the zooplankton mortality in an idealized way accounting for different target species (planktivorous fish—decreased zooplankton mortality; large predators—increased zooplankton mortality). This indirect approach is used in a global coupled biogeochemistry circulation model to estimate the range of the potential impact of industrial fisheries on marine biogeochemistry. The simulated globally integrated response on phytoplankton and primary production is in line with expectations—a high (low) zooplankton mortality results in a decrease (increase) of zooplankton and an increase (decrease) of phytoplankton. In contrast, the local response of zooplankton and phytoplankton depends on the region under consideration: In nutrient-limited regions, an increase (decrease) in zooplankton mortality leads to a decrease (increase) in both zooplankton and phytoplankton biomass. In contrast, in nutrient-replete regions, such as upwelling regions, we find an opposing response: an increase (decrease) of the zooplankton mortality leads to an increase (decrease) in both zooplankton and phytoplankton biomass. The results are further evaluated by relating the potential fisheries-induced changes in zooplankton mortality to those driven by CO2 emissions in a business-as-usual 21st century emission scenario. In our idealized case, the potential fisheries-induced impact can be of similar size as warming-induced changes in marine biogeochemistry.

  5. Microcystin production by Microcystis aeruginosa exposed to different stages of herbivorous zooplankton.

    PubMed

    Jang, Min-Ho; Ha, Kyong; Takamura, Noriko

    2008-04-01

    Microcystin (MC) production by four monoclonal Microcystis aeruginosa strains was evaluated in response to infochemicals (indirect exposure) released from different stages of herbivorous zooplankton (neonate/juvenile and adult Daphnia magna and Moina macrocopa). The intracellular MC and extracellular MC concentrations were significantly different among the control and treatments with zooplankton culture media filtrates (p<0.05), and in most cases MC production was significantly higher (p<0.05) in strains exposed to infochemicals released from adult zooplankton rather than those of neonate/juvenile zooplankton in four strains of M. aeruginosa. Compared to intracellular MC (385.0-5598.6microg g(-1)DW), very low concentrations of extracellular MC (9.9-737.6microg ml(-1)) were released, but both showed similar temporal patterns over the course of the experiment. This result might be attributed to the fact that adult zooplankton produced more infochemical signals than equal numbers of smaller juveniles and neonates. It is the first study to provide evidence that MC production might be impacted by infochemicals released from different stages of zooplankton, mediated with physiological characteristics, body size, and feeding habits.

  6. Terrestrial carbon is a resource, but not a subsidy, for lake zooplankton

    USGS Publications Warehouse

    Kelly, Patrick T.; Solomon, Christopher T.; Weidel, Brian C.; Jones, Stuart E.

    2014-01-01

    Inputs of terrestrial organic carbon (t-OC) into lakes are often considered a resource subsidy for aquatic consumer production. Although there is evidence that terrestrial carbon can be incorporated into the tissues of aquatic consumers, its ability to enhance consumer production has been debated. Our research aims to evaluate the net effect of t-OC input on zooplankton. We used a survey of zooplankton production and resource use in ten lakes along a naturally occurring gradient of t-OC concentration to address these questions. Total and group-specific zooplankton production was negatively related to t-OC. Residual variation in zooplankton production that was not explained by t-OC was negatively related to terrestrial resource use (allochthony) by zooplankton. These results challenge the designation of terrestrial carbon as a resource subsidy; rather, the negative effect of reduced light penetration on the amount of suitable habitat and the low resource quality of t-OC appear to diminish zooplankton production. Our findings suggest that ongoing continental-scale increases in t-OC concentrations of lakes will likely have negative impacts on the productivity of aquatic food webs.

  7. 210Po/210Pb dynamics in relation to zooplankton biomass and trophic conditions during an annual cycle in northwestern Mediterranean coastal waters.

    PubMed

    Färber Lorda, Jaime; Fowler, Scott W; Miquel, Juan-Carlos; Rodriguez y Baena, Alessia; Jeffree, Ross A

    2013-01-01

    Monthly sampling in northwestern Mediterranean coastal waters was undertaken to better understand the relationship between zooplankton biomass and the cycling of the natural radionuclide (210)Po/(210)Pb pair during a one-year period (October 1995-November 1996). In conjunction with mesozooplankton collections and (210)Po/(210)Pb measurements in seawater, zooplankton and their fecal pellets, the biochemical composition of particulate organic matter (POM) was also examined at three depths (0, 20 and 50 m) as an indicator of trophic conditions. During May 1996, a strong zooplankton "bloom" was observed which was preceded by a prolonged increase in POM (protein + carbohydrates + lipids) starting at the end of March, and further demonstrated by a concomitant increase in the concentration of smaller particles, two features that are typical of mesotrophic waters. Simultaneous measurements of (210)Po in sea water and zooplankton showed an inverse trend between these two parameters during the sampling period, with the two lowest (210)Po concentrations in the dissolved phase of seawater coincident with the highest radionuclide concentrations in the zooplankton; however, this apparent relationship was not statistically significant over the entire year. Freshly excreted mesozooplankton and salp fecal pellets, which have been strongly implicated in the removal and downward transport of these radionuclides from the upper water column, contained (210)Po and (210)Pb levels ranging from 175 to 878 and 7.5-486 Bq kg(-1) dry weight, respectively. Salp pellets contained 5 and 10 times more (210)Po and (210)Pb than in fecal pellets produced by mixed zooplankton, a finding most likely related to their different feeding strategies. During the zooplankton biomass peak observed in May, the (210)Po concentration in zooplankton was at a minimum; however, in contrast to what has been reported to occur in some open sea oligotrophic waters, over the year no statistically significant inverse

  8. Contribution and pathways of diazotroph-derived nitrogen to zooplankton during the VAHINE mesocosm experiment in the oligotrophic New Caledonia lagoon

    NASA Astrophysics Data System (ADS)

    Hunt, Brian P. V.; Bonnet, Sophie; Berthelot, Hugo; Conroy, Brandon J.; Foster, Rachel A.; Pagano, Marc

    2016-05-01

    In oligotrophic tropical and subtropical oceans, where strong stratification can limit the replenishment of surface nitrate, dinitrogen (N2) fixation by diazotrophs can represent a significant source of nitrogen (N) for primary production. The VAHINE (VAriability of vertical and tropHIc transfer of fixed N2 in the south-wEst Pacific) experiment was designed to examine the fate of diazotroph-derived nitrogen (DDN) in such ecosystems. In austral summer 2013, three large ( ˜ 50 m3) in situ mesocosms were deployed for 23 days in the New Caledonia lagoon, an ecosystem that typifies the low-nutrient, low-chlorophyll environment, to stimulate diazotroph production. The zooplankton component of the study aimed to measure the incorporation of DDN into zooplankton biomass, and assess the role of direct diazotroph grazing by zooplankton as a DDN uptake pathway. Inside the mesocosms, the diatom-diazotroph association (DDA) het-1 predominated during days 5-15 while the unicellular diazotrophic cyanobacteria UCYN-C predominated during days 15-23. A Trichodesmium bloom was observed in the lagoon (outside the mesocosms) towards the end of the experiment. The zooplankton community was dominated by copepods (63 % of total abundance) for the duration of the experiment. Using two-source N isotope mixing models we estimated a mean ˜ 28 % contribution of DDN to zooplankton nitrogen biomass at the start of the experiment, indicating that the natural summer peak of N2 fixation in the lagoon was already contributing significantly to the zooplankton. Stimulation of N2 fixation in the mesocosms corresponded with a generally low-level enhancement of DDN contribution to zooplankton nitrogen biomass, but with a peak of ˜ 73 % in mesocosm 1 following the UCYN-C bloom. qPCR analysis targeting four of the common diazotroph groups present in the mesocosms (Trichodesmium, het-1, het-2, UCYN-C) demonstrated that all four were ingested by copepod grazers, and that their abundance in copepod

  9. Effects of Bt-transgenic rice cultivation on planktonic communities in paddy fields and adjacent ditches.

    PubMed

    Liu, Yongbo; Liu, Fang; Wang, Chao; Quan, Zhanjun; Li, Junsheng

    2016-09-15

    The non-target effects of transgenic plants are issues of concern; however, their impacts in cultivated agricultural fields and adjacent natural aquatic ecosystems are poorly understood. We conducted field experiments during two growing seasons to determine the effects of cultivating Bacillus thuringiensis (Bt)-transgenic rice on the phytoplankton and zooplankton communities in a paddy field and an adjacent ditch. Bt toxin was detected in soil but not in water. Water quality was not significantly different between non-Bt and Bt rice fields, but varied among up-, mid- and downstream locations in the ditch. Cultivation of Bt-transgenic rice had no effects on zooplankton communities. Phytoplankton abundance and biodiversity were not significantly different between transgenic and non-transgenic rice fields in 2013; however, phytoplankton were more abundant in the transgenic rice field than in the non-transgenic rice field in 2014. Water quality and rice type explained 65.9% and 12.8% of this difference in 2014, respectively. Phytoplankton and zooplankton were more abundant in mid- and downstream, than upstream, locations in the ditch, an effect that we attribute to water quality differences. Thus, the release of Bt toxins into field water during the cultivation of transgenic crops had no direct negative effects on plankton community composition, but indirect effects that alter environmental conditions should be taken into account during the processes of management planning and policymaking. Copyright © 2016 Elsevier B.V. All rights reserved.

  10. Development of a Multimetric Indicator of Pelagic Zooplankton ...

    EPA Pesticide Factsheets

    We used zooplankton data collected for the 2012 National Lakes Assessment (NLA) to develop multimetric indices (MMIs) for five aggregated ecoregions of the conterminous USA (Coastal Plains, Eastern Highlands, Plains, Upper Midwest, and Western Mountains and Xeric [“West’]). We classified candidate metrics into six categories: We evaluated the performance of candidate metrics, and used metrics that had passed these screens to calculate all possible candidate MMIs that included at least one metric from each category. We selected the candidate MMI that had high responsiveness, a reasonable value for repeatability, low mean pairwise correlation among component metrics, and, when possible, a maximum pairwise correlation among component metrics that was <0.7. We were able to develop MMIs that were sufficiently responsive and repeatable to assess ecological condition for the NLA without the need to reduce the effects of natural variation using models. We did not observe effects of either lake size, lake origin, or site depth on the MMIs. The MMIs appear to respond more strongly to increased nutrient concentrations than to shoreline habitat conditions. Improving our understanding of how zooplankton assemblages respond to increased human disturbance, and obtaining more complete autecological information for zooplankton taxa would likely improve MMIs developed for future assessments. Using zooplankton assemblage data from the 2012 National Lakes Assessment (NLA),

  11. The deep-sea zooplankton of the North, Central, and South Atlantic: Biomass, abundance, diversity

    NASA Astrophysics Data System (ADS)

    Vereshchaka, Alexander; Abyzova, Galina; Lunina, Anastasia; Musaeva, Eteri

    2017-03-01

    Ocean-scale surveys of vertical distribution of the zooplankton from the surface to the bathypelagic zone along transects are quite rare in the North Atlantic and absent in the Equatorial and South Atlantic. We present the first deep-sea quantitative survey of the zooplankton in the Equatorial and South Atlantic, analyze the interaction between environment (depth, water masses, surface productivity) and zooplankton abundance and biomass, and assess the biodiversity and role of copepods in various deep strata. Samples were taken at 20 sites along a submeridional transect between 40°N and 30°S at four discrete depth strata: epi- meso-, upper- and lower- bathypelagic. A closing Bogorov-Rass plankton net (1 m2 opening, 500 μm mesh size, towed at a speed of 1 m s-1) was used and three major plankton groups were defined: non-gelatinous mesozooplankton (mainly copepods and chaetognaths; 1-30 mm length), gelatinous mesozooplankton (mainly siphonophorans, medudae and salps; individual or zooid; 1-30 mm length) and macroplankton (mainly shrimps; over 30 mm length). Over 300 plankton taxa were identified, among which 243 belonged to Copepoda. Two-dimensional distribution (latitude versus depth zone) of major group biomass, total copepod abundance, and abundance of dominant species is presented as well as distribution of biodiversity parameters (number of species, Shannon and 'dominance' indices). Biomass and abundance of all major groups were depth-dependent. The number of taxa (N) was depended on surface productivity, diversity of the communities was strongly linked to depth, whilst 'evenness' was independant upon both variables. Each of depth strata was inhabited by distinct copepod assemblages, which significantly differed from each other. The paper is concluded with brief descriptions of the deep Atlantic plankton communities from studied strata.

  12. A new modelling approach for zooplankton behaviour

    NASA Astrophysics Data System (ADS)

    Keiyu, A. Y.; Yamazaki, H.; Strickler, J. R.

    We have developed a new simulation technique to model zooplankton behaviour. The approach utilizes neither the conventional artificial intelligence nor neural network methods. We have designed an adaptive behaviour network, which is similar to BEER [(1990) Intelligence as an adaptive behaviour: an experiment in computational neuroethology, Academic Press], based on observational studies of zooplankton behaviour. The proposed method is compared with non- "intelligent" models—random walk and correlated walk models—as well as observed behaviour in a laboratory tank. Although the network is simple, the model exhibits rich behavioural patterns similar to live copepods.

  13. Potential retention effect at fish farms boosts zooplankton abundance

    NASA Astrophysics Data System (ADS)

    Fernandez-Jover, D.; Toledo-Guedes, K.; Valero-Rodríguez, J. M.; Fernandez-Gonzalez, V.; Sanchez-Jerez, P.

    2016-11-01

    Coastal aquaculture activities influence wild macrofauna in natural environments due to the introduction of artificial structures, such as floating cages, that provide structural complexity in the pelagic system. This alters the abundance and distribution of the affected species and also their feeding behaviour and diet. Despite this, the effects of coastal aquaculture on zooplankton assemblages and the potential changes in their abundance and distribution remain largely unstudied. Traditional plankton sampling hauls between the farm mooring systems entail some practical difficulties. As an alternative, light traps were deployed at 2 farms in the SW Mediterranean during a whole warm season. Total zooplankton capture by traps at farms was higher than at control locations on every sampling night. It ranged from 3 to 10 times higher for the taxonomic groups: bivalvia, cladocera, cumacea, fish early-life-stages, gastropoda, polychaeta and tanaidacea; 10-20 times higher for amphipoda, chaetognatha, isopoda, mysidacea and ostracoda, and 22 times higher for copepoda and the crustacean juvenile stages zoea and megalopa. Permutational analysis showed significant differences for the most abundant zooplankton groups (copepoda, crustacean larvae, chaetognatha, cladocera, mysidacea and polychaeta). This marked incremental increase in zooplankton taxa at farms was consistent, irrespective of the changing environmental variables registered every night. Reasons for the greater abundance of zooplankton at farms are discussed, although results suggest a retention effect caused by cage structures rather than active attraction through physical or chemical cues.

  14. Hydroxide stabilization as a new tool for ballast disinfection: Efficacy of treatment on zooplankton

    USGS Publications Warehouse

    Moffitt, Christine M.; Watten, Barnaby J.; Barenburg, Amber; Henquinet, Jeffrey

    2015-01-01

    Effective and economical tools are needed for treating ship ballast to meet new regulatory requirements designed to reduce the introduction of invasive aquatic species from ship traffic. We tested the efficacy of hydroxide stabilization as a ballast disinfection tool in replicated, sequential field trials on board the M/V Ranger III in waters of Lake Superior. Ballast water was introduced into each of four identical 1,320 L stainless steel tanks during a simulated ballasting operation. Two tanks were treated with NaOH to elevate the pH to 11.7 and the remaining two tanks were held as controls without pH alteration. After retention on board for 14–18 h, CO2-rich gas recovered from one of two diesel propulsion engines was sparged into tanks treated with NaOH for 2 h to force conversion of NaOH ultimately to sodium bicarbonate, thereby lowering pH to about 7.1. Prior to gas sparging, the engine exhaust was treated by a unique catalytic converter/wet scrubber process train to remove unwanted combustion byproducts and to provide cooling. The contents of each tank were then drained and filtered through 35-µm mesh plankton nets to collect all zooplankton. The composition and relative survival of zooplankton in each tank were evaluated by microscopy. Zooplankton populations were dominated by rotifers, but copepods and cladocerans were also observed. Hydroxide stabilization was 100% effective in killing all zooplankton present at the start of the tests. Our results suggest hydroxide stabilization has potential to be an effective and practical tool to disinfect ship ballast. Further, using CO2 released from the ship engine reduces emissions and the neutralized by product, sodium bicarbonate, can have beneficial impacts on the aquatic environment.

  15. Is Ambient Light during the High Arctic Polar Night Sufficient to Act as a Visual Cue for Zooplankton?

    PubMed Central

    Cohen, Jonathan H.; Berge, Jørgen; Moline, Mark A.; Sørensen, Asgeir J.; Last, Kim; Falk-Petersen, Stig; Renaud, Paul E.; Leu, Eva S.; Grenvald, Julie; Cottier, Finlo; Cronin, Heather; Menze, Sebastian; Norgren, Petter; Varpe, Øystein; Daase, Malin; Darnis, Gerald; Johnsen, Geir

    2015-01-01

    The light regime is an ecologically important factor in pelagic habitats, influencing a range of biological processes. However, the availability and importance of light to these processes in high Arctic zooplankton communities during periods of 'complete' darkness (polar night) are poorly studied. Here we characterized the ambient light regime throughout the diel cycle during the high Arctic polar night, and ask whether visual systems of Arctic zooplankton can detect the low levels of irradiance available at this time. To this end, light measurements with a purpose-built irradiance sensor and coupled all-sky digital photographs were used to characterize diel skylight irradiance patterns over 24 hours at 79°N in January 2014 and 2015. Subsequent skylight spectral irradiance and in-water optical property measurements were used to model the underwater light field as a function of depth, which was then weighted by the electrophysiologically determined visual spectral sensitivity of a dominant high Arctic zooplankter, Thysanoessa inermis. Irradiance in air ranged between 1–1.5 x 10-5 μmol photons m-2 s-1 (400–700 nm) in clear weather conditions at noon and with the moon below the horizon, hence values reflect only solar illumination. Radiative transfer modelling generated underwater light fields with peak transmission at blue-green wavelengths, with a 465 nm transmission maximum in shallow water shifting to 485 nm with depth. To the eye of a zooplankter, light from the surface to 75 m exhibits a maximum at 485 nm, with longer wavelengths (>600 nm) being of little visual significance. Our data are the first quantitative characterisation, including absolute intensities, spectral composition and photoperiod of biologically relevant solar ambient light in the high Arctic during the polar night, and indicate that some species of Arctic zooplankton are able to detect and utilize ambient light down to 20–30m depth during the Arctic polar night. PMID:26039111

  16. Seasonal cross-shelf distribution of major zooplankton taxa on the northern Gulf of Alaska shelf relative to water mass properties, species depth preferences and vertical migration behavior

    NASA Astrophysics Data System (ADS)

    Coyle, Kenneth O.; Pinchuk, Alexei I.

    2005-01-01

    The cross-shelf distribution of major zooplankton species was examined on the northern Gulf of Alaska (GOA) shelf during the production season for four years, between October 1997 and October 2001. The zooplankton community on the northern GOA shelf consisted of oceanic and neritic species of the North Pacific subarctic species complex. Cross-shelf distribution of the major zooplankton species was influenced by their depth preferences, vertical migration behavior, salinity-temperature preferences, and by cross-shelf water-mass distribution and movement. The neritic community, dominated by Pseudocalanus spp., Metridia pacifica and Calanus marshallae, had highest abundances on the inner shelf, in the Alaska Coastal Current, and in the adjacent fjords in late spring and early summer. The oceanic community, which contained primarily Neocalanus cristatus and Eucalanus bungii, was observed in the Alaskan Stream and adjacent waters near the shelf break. A mid-shelf transition zone contained a mixture of oceanic and neritic species. Prince William Sound (PWS) contained a unique species complex of large mesopelagic copepods, amphipods and shrimp. Neocalanus flemingeri and Oithona similis were abundant in all four regions during spring and early summer. The transition zone commonly crossed much of the shelf between the shelf break and the ACC, but satellite images and CTD data indicate that occasionally a narrow shelf-break front can form, in which case distinct zooplankton species groups are observed on either side of the front. Satellite data also revealed numerous large and small eddies, which probably contribute to cross-shelf mixing in the transition zone.

  17. Feeding and production of zooplankton in the Catalan Sea (NW Mediterranean)

    NASA Astrophysics Data System (ADS)

    Saiz, Enric; Calbet, Albert; Atienza, Dacha; Alcaraz, Miquel

    2007-08-01

    Zooplankton are key components of the structure and functioning of marine planktonic food webs. They are the main link of planktonic primary production towards top pelagic consumer levels (fish), and play a relevant role on the nutrient recycling in the water column and on the export of particulate matter out of the photic zone. In this paper, we review the present knowledge on the feeding and production of zooplankton in the Catalan Sea (NW Mediterranean), with special emphasis on copepods. Feeding of zooplankton in the Catalan Sea appears typically food limited, with average daily rations on a yearly basis in the order of 48% body C d -1. Heterotrophic prey constitute a relevant fraction of their diet, as an alternative to the scarce phytoplankton in the area. From a structural point of view, the trophic impact and control of their prey populations are low on standing stocks but, at certain times, zooplankton can exert a meaningful effect on their prey production. Regarding zooplankton production, the available estimates of growth rates in the area are based on the egg production rate of copepods. Egg production rates appear to be limited, especially in summer. Tentative estimates of copepod production in the area are in the order of 20-40 mg C m -2 d -1. In conclusion, this review confirms that the oligotrophic character of the NW Mediterranean constrains the feeding activity and production of zooplankton.

  18. Interactive effects of chemical and biological controls on food-web composition in saline prairie lakes.

    PubMed

    Cooper, Ryan N; Wissel, Björn

    2012-11-27

    Salinity is restricting habitatability for many biota in prairie lakes due to limited physiological abilities to cope with increasing osmotic stress. Yet, it remains unclear how salinity effects vary among major taxonomic groups and what role other environmental parameters play in shaping food-web composition. To answer these questions, we sampled fish, zooplankton and littoral macroinvertebrates in 20 prairie lakes (Saskatchewan, Canada) characterized by large gradients in water chemistry and lake morphometry. We showed that salinity thresholds differed among major taxonomic groups, as most fishes were absent above salinities of 2 g L-1, while littoral macroinvertebrates were ubiquitous. Zooplankton occurred over the whole salinity range, but changed taxonomic composition as salinity increased. Subsequently, the complexity of fish community (diversity) was associated with large changes in invertebrate communities. The directional changes in invertebrate communities to smaller taxa indicated that complex fish assemblages resulted in higher predation pressure. Most likely, as the complexity of fish community decreased, controls of invertebrate assemblages shifted from predation to competition and ultimately to productivity in hypersaline lakes. Surprisingly, invertebrate predators did not thrive in the absence of fishes in these systems. Furthermore, the here identified salinity threshold for fishes was too low to be a result of osmotic stress. Hence, winterkill was likely an important factor eliminating fishes in low salinity lakes that had high productivity and shallow water depth. Ultimately, while salinity was crucial, intricate combinations of chemical and biological mechanisms also played a major role in controlling the assemblages of major taxonomic groups in prairie lakes.

  19. Interactive effects of chemical and biological controls on food-web composition in saline prairie lakes

    PubMed Central

    2012-01-01

    Salinity is restricting habitatability for many biota in prairie lakes due to limited physiological abilities to cope with increasing osmotic stress. Yet, it remains unclear how salinity effects vary among major taxonomic groups and what role other environmental parameters play in shaping food-web composition. To answer these questions, we sampled fish, zooplankton and littoral macroinvertebrates in 20 prairie lakes (Saskatchewan, Canada) characterized by large gradients in water chemistry and lake morphometry. We showed that salinity thresholds differed among major taxonomic groups, as most fishes were absent above salinities of 2 g L-1, while littoral macroinvertebrates were ubiquitous. Zooplankton occurred over the whole salinity range, but changed taxonomic composition as salinity increased. Subsequently, the complexity of fish community (diversity) was associated with large changes in invertebrate communities. The directional changes in invertebrate communities to smaller taxa indicated that complex fish assemblages resulted in higher predation pressure. Most likely, as the complexity of fish community decreased, controls of invertebrate assemblages shifted from predation to competition and ultimately to productivity in hypersaline lakes. Surprisingly, invertebrate predators did not thrive in the absence of fishes in these systems. Furthermore, the here identified salinity threshold for fishes was too low to be a result of osmotic stress. Hence, winterkill was likely an important factor eliminating fishes in low salinity lakes that had high productivity and shallow water depth. Ultimately, while salinity was crucial, intricate combinations of chemical and biological mechanisms also played a major role in controlling the assemblages of major taxonomic groups in prairie lakes. PMID:23186395

  20. PCR-Based Assessment of Freshwater Zooplankton Feeding on Edible and "Inedible" Prey In Situ.

    NASA Astrophysics Data System (ADS)

    Nejstgaard, J. C.; Belyaeva, M.; Van den Wyngaert, S.; Berger, S. A.; Grossart, H. P.; Kasprzak, P.

    2016-02-01

    Microbiota in pelagic ecosystems can affect zooplankton nutrition in several ways that are not readily assessable in situ, using classical approaches. In contrast to classical food web models identifying phytoplankton as the dominant food source for crustacean zooplankton, recent findings increasingly suggest that zooplankton may derive a significant part of the diet from a wide variety of taxa including ciliates, aquatic fungi, bacteria and small metazoan zooplankton (e.g. rotifers), in both marine and freshwaters. Direct quantification of soft-bodied and non-pigmented prey in zooplankton guts as well as symbionts and parasites on the prey and zooplankton itself has so far been impeded by the lack of appropriate methodology. We aim to establish molecular approaches to quantify these yet-understudied interactions in lake food webs. As a first step we have validated the qPCR detection method in laboratory experiments with cladoceran, calanoid and cyclopoid predators and algal prey species (Cryptomonas sp.). We plan to apply the method to study the dietary contribution of aquatic fungi - chytrids, which are parasites on inedible phytoplankton species, thus aiming to provide insights into the Mycoloop - energy transfer from inedible phytoplankton to zooplankton via fungal parasites. The quantitative PCR method, when validated for key zooplankton species and specific prey or parasite groups, has a potential for a broad range of applications in food web research.

  1. Changes to the hydrography and zooplankton in the northern California Current in response to `the Blob'of 2014-2015

    NASA Astrophysics Data System (ADS)

    Peterson, W. T.

    2016-02-01

    Fortnightly measurements of hydrography and zooplankton species composition have been sustained along the Newport Hydrographic line since 1996. From this 20 year time series we have established that zooplankton abundance and species composition closely tracks the phase of the Pacific Decadal Oscillation and the El Nino Southern Oscillation. During positive (warm) phase of the PDO, a warm water `southern' subtropical coastal community is found whereas during negative (cold) phase a cold water `northern'coastal community dominates. The Blob though was a rule-changer. The Blob began to move slowly ashore at Newport on 14 September 2014 with the seasonal relaxation of upwelling, and within 5 h SST increased 6°C to 19.4°C. On the 25 and 30 September cruises, copepod species richness increased as well, with an anomaly of 2 and 9 species respectively, greater than the 20 year climatology for September. We continued to monitor the plankton throughout the autumn 2014 and winter, spring and summer 2015 and found a total of seventeen copepod species that were either new to Oregon or have occurred only rarely in the past. Many of these species are oceanic with sub-tropical or tropical affinities thus are indicators of tropical waters, suggesting that the Blob water which came ashore in central Oregon had its origins offshore rather than from coastal waters to the south. Some of the copepod species that were new or rarely seen included Subeucalanus crassus, Eucalanus hyalinus, Mecynocera clausi, Calocalanus pavo, Centropages bradyii, and Pleuromamma borealis and P. xiphias. Krill biomass was the lowest in our 20 year time series. The southern California Current neritic krill species Nyctiphanes simplex appears off Oregon during major El Niño events (1983, 1998), but none were seen during The Blob event which again suggests that the origin of the Blob water which appeared off Oregon was from far offshore, not from coastal waters to the south. Note in the figure below that

  2. Changes in fecal pellet characteristics with depth as indicators of zooplankton repackaging of particles in the mesopelagic zone of the subtropical and subarctic North Pacific Ocean

    NASA Astrophysics Data System (ADS)

    Wilson, Stephanie E.; Steinberg, Deborah K.; Buesseler, Ken O.

    2008-07-01

    We investigated how fecal pellet characteristics change with depth in order to quantify the extent of particle repackaging by mesopelagic zooplankton in two contrasting open-ocean systems. Material from neutrally buoyant sediment traps deployed in the summer of 2004 and 2005 at 150, 300, and 500 m was analyzed from both a mesotrophic (Japanese time-series station K2) and an oligotrophic (Hawaii Ocean Time series—HOT station ALOHA) environment in the Pacific Ocean as part of the VERtical Transport In the Global Ocean (VERTIGO) project. We quantified changes in the flux, size, shape, and color of particles recognizable as zooplankton fecal pellets to determine how these parameters varied with depth and location. Flux of K2 fecal pellet particulate organic carbon (POC) at 150 and 300 m was four to five times higher than at ALOHA, and at all depths, fecal pellets were two to five times larger at K2, reflective of the disparate zooplankton community structure at the two sites. At K2, the proportion of POC flux that consisted of fecal pellets generally decreased with depth from 20% at 150 m to 5% at 500 m, whereas at ALOHA this proportion increased with depth (and was more variable) from 14% to 35%. This difference in the fecal fraction of POC with increasing depth is hypothesized to be due to differences in the extent of zooplankton-mediated fragmentation (coprohexy) and in zooplankton community structure between the two locations. Both regions provided indications of sinking particle repackaging and zooplankton carnivory in the mesopelagic. At ALOHA, this was reflected in a significant increase in the mean flux of larvacean fecal pellets from 150 to 500 m of 3-46 μg C m -2 d -1, respectively, and at K2 a large peak in larvacean mean pellet flux at 300 m of 3.1 mg C m -2 d -1. Peaks in red pellets produced by carnivores occurred at 300 m at K2, and a variety of other fecal pellet classes showed significant changes in their distribution with depth. There was also

  3. Trophic pathways of phytoplankton size classes through the zooplankton food web over the spring transition period in the north-west Mediterranean Sea

    NASA Astrophysics Data System (ADS)

    Hunt, Brian P. V.; Carlotti, François; Donoso, Katty; Pagano, Marc; D'Ortenzio, Fabrizio; Taillandier, Vincent; Conan, Pascal

    2017-08-01

    Knowledge of the relative contributions of phytoplankton size classes to zooplankton biomass is necessary to understand food-web functioning and response to climate change. During the Deep Water formation Experiment (DEWEX), conducted in the north-west Mediterranean Sea in winter (February) and spring (April) of 2013, we investigated phytoplankton-zooplankton trophic links in contrasting oligotrophic and eutrophic conditions. Size fractionated particulate matter (pico-POM, nano-POM, and micro-POM) and zooplankton (64 to >4000 μm) composition and carbon and nitrogen stable isotope ratios were measured inside and outside the nutrient-rich deep convection zone in the central Liguro-Provencal basin. In winter, phytoplankton biomass was low (0.28 mg m-3) and evenly spread among picophytoplankton, nanophytoplankton, and microphytoplankton. Using an isotope mixing model, we estimated average contributions to zooplankton biomass by pico-POM, nano-POM, and micro-POM of 28, 59, and 15%, respectively. In spring, the nutrient poor region outside the convection zone had low phytoplankton biomass (0.58 mg m-3) and was dominated by pico/nanophytoplankton. Estimated average contributions to zooplankton biomass by pico-POM, nano-POM, and micro-POM were 64, 28 and 10%, respectively, although the model did not differentiate well between pico-POM and nano-POM in this region. In the deep convection zone, spring phytoplankton biomass was high (1.34 mg m-3) and dominated by micro/nano phytoplankton. Estimated average contributions to zooplankton biomass by pico-POM, nano-POM, and micro-POM were 42, 42, and 20%, respectively, indicating that a large part of the microphytoplankton biomass may have remained ungrazed.Plain Language SummaryThe grazing of <span class="hlt">zooplankton</span> on algal phytoplankton is a critical step in the transfer of energy through all ocean food webs. Although microscopic, phytoplankton span an enormous size range. The smallest</p> </li> <li> <p><a target="_blank" onclick="trackOutboundLink('http://files.eric.ed.gov/fulltext/ED557404.pdf','ERIC'); return false;" href="http://files.eric.ed.gov/fulltext/ED557404.pdf"><span><span class="hlt">Composition</span>, Cognition, Creativity, and <span class="hlt">Community</span></span></a></p> <p><a target="_blank" href="http://www.eric.ed.gov/ERICWebPortal/search/extended.jsp?_pageLabel=advanced">ERIC Educational Resources Information Center</a></p> <p>Moberg, Eric Michael; Kobylarz, Philip</p> <p>2015-01-01</p> <p>The purpose of this study was to examine the intersection between and among creativity, cognition, <span class="hlt">composition</span>, and <span class="hlt">community</span>. Researchers studied hundreds of adult students from several California <span class="hlt">community</span> colleges and private universities by means of surveys, observations, and interviews to augment an extensive historical literature review.…</p> </li> <li> <p><a target="_blank" onclick="trackOutboundLink('https://www.pubmedcentral.nih.gov/articlerender.fcgi?tool=pmcentrez&artid=5390085','PMC'); return false;" href="https://www.pubmedcentral.nih.gov/articlerender.fcgi?tool=pmcentrez&artid=5390085"><span>Mechanisms shaping size structure and functional diversity of phytoplankton <span class="hlt">communities</span> in the ocean</span></a></p> <p><a target="_blank" href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?DB=pmc">PubMed Central</a></p> <p>Acevedo-Trejos, Esteban; Brandt, Gunnar; Bruggeman, Jorn; Merico, Agostino</p> <p>2015-01-01</p> <p>The factors regulating phytoplankton <span class="hlt">community</span> <span class="hlt">composition</span> play a crucial role in structuring aquatic food webs. However, consensus is still lacking about the mechanisms underlying the observed biogeographical differences in cell size <span class="hlt">composition</span> of phytoplankton <span class="hlt">communities</span>. Here we use a trait-based model to disentangle these mechanisms in two contrasting regions of the Atlantic Ocean. In our model, the phytoplankton <span class="hlt">community</span> can self-assemble based on a trade-off emerging from relationships between cell size and (1) nutrient uptake, (2) <span class="hlt">zooplankton</span> grazing, and (3) phytoplankton sinking. Grazing ‘pushes’ the <span class="hlt">community</span> towards larger cell sizes, whereas nutrient uptake and sinking ‘pull’ the <span class="hlt">community</span> towards smaller cell sizes. We find that the stable environmental conditions of the tropics strongly balance these forces leading to persistently small cell sizes and reduced size diversity. In contrast, the seasonality of the temperate region causes the <span class="hlt">community</span> to regularly reorganize via shifts in species <span class="hlt">composition</span> and to exhibit, on average, bigger cell sizes and higher size diversity than in the tropics. Our results raise the importance of environmental variability as a key structuring mechanism of plankton <span class="hlt">communities</span> in the ocean and call for a reassessment of the current understanding of phytoplankton diversity patterns across latitudinal gradients. PMID:25747280</p> </li> <li> <p><a target="_blank" onclick="trackOutboundLink('https://www.ncbi.nlm.nih.gov/pubmed/20584098','PUBMED'); return false;" href="https://www.ncbi.nlm.nih.gov/pubmed/20584098"><span>Prey dispersal rate affects prey species <span class="hlt">composition</span> and trait diversity in response to multiple predators in metacommunities.</span></a></p> <p><a target="_blank" href="https://www.ncbi.nlm.nih.gov/entrez/query.fcgi?DB=pubmed">PubMed</a></p> <p>Howeth, Jennifer G; Leibold, Mathew A</p> <p>2010-09-01</p> <p>1. Recent studies indicate that large-scale spatial processes can alter local <span class="hlt">community</span> structuring mechanisms to determine local and regional assemblages of predators and their prey. In metacommunities, this may occur when the functional diversity represented in the regional predator species pool interacts with the rate of prey dispersal among local <span class="hlt">communities</span> to affect prey species diversity and trait <span class="hlt">composition</span> at multiple scales. 2. Here, we test for effects of prey dispersal rate and spatially and temporally heterogeneous predation from functionally dissimilar predators on prey structure in pond mesocosm metacommunities. An experimental metacommunity consisted of three pond mesocosm <span class="hlt">communities</span> supporting two differentially size-selective invertebrate predators and their <span class="hlt">zooplankton</span> prey. In each metacommunity, two <span class="hlt">communities</span> maintained constant predation and supported either Gyrinus sp. (Coleoptera) or Notonecta ungulata (Hemiptera) predators generating a spatial prey refuge while the third <span class="hlt">community</span> supported alternating predation from Gyrinus sp. and N. ungulata generating a temporal prey refuge. Mesocosm metacommunities were connected at either low (0.7% day(-1)) or high (10% day(-1)) planktonic prey dispersal. The diversity, <span class="hlt">composition</span> and body size of <span class="hlt">zooplankton</span> prey were measured at local and regional (metacommunity) scales. 3. Metacommunities experiencing the low prey dispersal rate supported the greatest regional prey species diversity (H') and evenness (J'). Neither dispersal rate nor predation regime affected local prey diversity or evenness. The spatial prey refuge at low dispersal maintained the largest difference in species <span class="hlt">composition</span> and body size diversity between <span class="hlt">communities</span> under Gyrinus and Notonecta predation, suggesting that species sorting was operating at the low dispersal rate. There was no effect of dispersal rate on species diversity or body size distribution in the temporal prey refuge. 4. The frequency distribution, but not</p> </li> <li> <p><a target="_blank" onclick="trackOutboundLink('http://adsabs.harvard.edu/abs/2017DSRII.135...27P','NASAADS'); return false;" href="http://adsabs.harvard.edu/abs/2017DSRII.135...27P"><span>Spatial heterogeneity in <span class="hlt">zooplankton</span> summer distribution in the eastern Chukchi Sea in 2012-2013 as a result of large-scale interactions of water masses</span></a></p> <p><a target="_blank" href="http://adsabs.harvard.edu/abstract_service.html">NASA Astrophysics Data System (ADS)</a></p> <p>Pinchuk, Alexei I.; Eisner, Lisa B.</p> <p>2017-01-01</p> <p>Interest in the Arctic shelf ecosystems has increased in recent years as the climate has rapidly warmed and sea ice declined. These changing conditions prompted the broad-scale multidisciplinary Arctic Ecosystem integrated survey (Arctic Eis) aimed at systematic, comparative analyses of interannual variability of the shelf ecosystem. In this study, we compared <span class="hlt">zooplankton</span> <span class="hlt">composition</span> and geographical distribution in relation to water properties on the eastern Chukchi and northern Bering Sea shelves during the summers of 2012 and 2013. In 2012, waters of Pacific origin prevailed over the study area carrying expatriate oceanic species (e.g. copepods Neocalanus spp., Eucalanus bungii) from the Bering Sea outer shelf well onto the northeastern Chukchi shelf. In contrast, in 2013, <span class="hlt">zooplankton</span> of Pacific origin was mainly distributed over the southern Chukchi shelf, suggesting a change of advection pathways into the Arctic. These changes also manifested in the emergence of large lipid-rich Arctic <span class="hlt">zooplankton</span> (e.g. Calanus hyperboreus) on the northeastern Chukchi shelf in 2013. The predominant copepod Calanus glacialis was composed of two distinct populations originating from the Bering Sea and from the Arctic, with the Arctic population expanding over a broader range in 2013. The observed interannual variability in <span class="hlt">zooplankton</span> distribution on the Chukchi Sea shelf may be explained by previously described systematic oceanographic patterns derived from long-term observations. Variability in oceanic circulation and related <span class="hlt">zooplankton</span> distributions (e.g. changes in southwestward advection of C. hyperboreus) may impact keystone predators such as Arctic Cod (Boreogadus saida) that feed on energy-rich <span class="hlt">zooplankton</span>.</p> </li> <li> <p><a target="_blank" onclick="trackOutboundLink('http://adsabs.harvard.edu/abs/1983DSRA...30.1199S','NASAADS'); return false;" href="http://adsabs.harvard.edu/abs/1983DSRA...30.1199S"><span>Dissolved and fecal pellet carbon and nitrogen release by <span class="hlt">zooplankton</span> in tropical waters</span></a></p> <p><a target="_blank" href="http://adsabs.harvard.edu/abstract_service.html">NASA Astrophysics Data System (ADS)</a></p> <p>Small, Lawrence F.; Fowler, Scott W.; Moore, Stanley A.; LaRosa, Jacques</p> <p>1983-12-01</p> <p>Carbon (C) and nitrogen (N) release by tropical <span class="hlt">zooplankton</span> (mostly copepods) and micronekton (euphausiids, pelagic red crabs, and salps) was investigated near VERTEX particle traps at 18°N, 108°W (in 1981) and 15°40'N, 107°30'W (in 1982). The objective was to assess the significance of fecal pellet release relative to respiratory and dissolved excretory release of C and N and relative to primary production in the same waters. For small (< 300 μm) and large (300 to 500 μm) <span class="hlt">zooplankton</span>, 38 to 49% more ammonium-nitrogen was excreted than C was respired, relative to body concentrations of N and C, respectively. However, for the same <span class="hlt">zooplankton</span>, 40 to 54% less fecal N was egested than fecal C, again relative to body C and N contents. This apparent compensation yielded a relatively constant body C:N ratio, and, because of the relatively low ratio of respiratory C to excretory N, implied a protein-based metabolism. The same compensatory relationships were found for euphausiids and red crabs, except the percentages of C and N losses were lower than for the <span class="hlt">zooplankton</span>. No such compensatory relationship was found for the salps, using respiratory—excretory data from the literature and our own observations of fecal pellet production. Either the literature data were not applicable to our salps, or the salps had a more lipid-based metabolism. Reasonably balanced C and N loss budgets were computed for the small and large <span class="hlt">zooplankton</span>. Daily fecal pellet C egestion represented only 2 to 3% of both large and small <span class="hlt">zooplankton</span> body C content, and daily fecal pellet N egestion was <2% of <span class="hlt">zooplankton</span> body N. Likewise, daily fecal pellet production by small and large <span class="hlt">zooplankton</span> together accounted for <2% of the daily primary C and N production in the top 100 m of water; that is, 'new' primary production would have had to replace losses of <2% per day to balance fecal pellet losses from large and small <span class="hlt">zooplankton</span>, presuming all fecal pellets sank below 100 m without being</p> </li> <li> <p><a target="_blank" onclick="trackOutboundLink('http://adsabs.harvard.edu/abs/2016APS..MARE35010F','NASAADS'); return false;" href="http://adsabs.harvard.edu/abs/2016APS..MARE35010F"><span>Predicting <span class="hlt">community</span> <span class="hlt">composition</span> from pairwise interactions</span></a></p> <p><a target="_blank" href="http://adsabs.harvard.edu/abstract_service.html">NASA Astrophysics Data System (ADS)</a></p> <p>Friedman, Jonathan; Higgins, Logan; Gore, Jeff</p> <p></p> <p>The ability to predict the structure of complex, multispecies <span class="hlt">communities</span> is crucial for understanding the impact of species extinction and invasion on natural <span class="hlt">communities</span>, as well as for engineering novel, synthetic <span class="hlt">communities</span>. <span class="hlt">Communities</span> are often modeled using phenomenological models, such as the classical generalized Lotka-Volterra (gLV) model. While a lot of our intuition comes from such models, their predictive power has rarely been tested experimentally. To directly assess the predictive power of this approach, we constructed synthetic <span class="hlt">communities</span> comprised of up to 8 soil bacteria. We measured the outcome of competition between all species pairs, and used these measurements to predict the <span class="hlt">composition</span> of <span class="hlt">communities</span> composed of more than 2 species. The pairwise competitions resulted in a diverse set of outcomes, including coexistence, exclusion, and bistability, and displayed evidence for both interference and facilitation. Most pair outcomes could be captured by the gLV framework, and the <span class="hlt">composition</span> of multispecies <span class="hlt">communities</span> could be predicted for <span class="hlt">communities</span> composed solely of such pairs. Our results demonstrate the predictive ability and utility of simple phenomenology, which enables accurate predictions in the absence of mechanistic details.</p> </li> <li> <p><a target="_blank" onclick="trackOutboundLink('https://www.ncbi.nlm.nih.gov/pubmed/29614408','PUBMED'); return false;" href="https://www.ncbi.nlm.nih.gov/pubmed/29614408"><span>Mixture of commercial herbicides based on 2,4-D and glyphosate mixture can suppress the emergence of <span class="hlt">zooplankton</span> from sediments.</span></a></p> <p><a target="_blank" href="https://www.ncbi.nlm.nih.gov/entrez/query.fcgi?DB=pubmed">PubMed</a></p> <p>Portinho, Jorge L; Nielsen, Daryl L; Daré, Luana; Henry, Raoul; Oliveira, Régis C; Branco, Ciro C Z</p> <p>2018-07-01</p> <p>It is generally assumed that <span class="hlt">zooplankton</span> can recolonize lakes that have been exposed to pesticides, via their dormant egg banks. Hitherto, few studies have evaluated the relative importance of dormant egg bank recruitment in the re-establishment of <span class="hlt">zooplankton</span> <span class="hlt">communities</span> in the presence of pesticide. This study investigated the effects of commercial products Bratt ® (a.i. 2,4-D), Roundup ® (a.i. glyphosate) and their mixture on the emergence (abundance and taxon richness) of dormant <span class="hlt">zooplankton</span> egg banks from natural lake sediment. Sediment samples were collected from the surface sediment (<10 cm depth) in four lakes in Southeast São Paulo, Brazil. We performed a hatching experiment, in which natural lake sediments containing dormant eggs were exposed separately to Bratt ® (applied concentrations ranging from 0.30 to 20 mg L -1 ), Roundup ® (0.28-8.5 mg L -1 ), and combined mixtures of all concentrations, plus one control (non-exposure to formulated herbicides) for a period of 28 days. All tested concentrations of Bratt ® , Roundup ® and their mixture reduced the abundance and taxon richness of emerging <span class="hlt">zooplankton</span> (except 2 mg L -1 of Bratt ® ). This effect was more pronounced in rotifers. In comparison, there were no negative effects on the emergence of microcrustaceans. These findings suggest that commercial products Bratt ® , Roundup ® and their mixture can suppress the emergence of rotifers, thereby influencing <span class="hlt">zooplankton</span> recruitment potential in lakes impacted by the presence of these commercial herbicides. Our results stress the importance of the need for additional studies to assess the effects of pesticides on dormant egg banks. Copyright © 2018 Elsevier Ltd. All rights reserved.</p> </li> <li> <p><a target="_blank" onclick="trackOutboundLink('http://adsabs.harvard.edu/abs/2003DSRII..50.2895A','NASAADS'); return false;" href="http://adsabs.harvard.edu/abs/2003DSRII..50.2895A"><span>A hybrid spectral representation of phytoplankton growth and <span class="hlt">zooplankton</span> response: The ''control rod'' model of plankton interaction</span></a></p> <p><a target="_blank" href="http://adsabs.harvard.edu/abstract_service.html">NASA Astrophysics Data System (ADS)</a></p> <p>Armstrong, Robert A.</p> <p>2003-11-01</p> <p>Phytoplankton species interact through competition for light and nutrients; they also interact through grazers they hold in common. Both interactions are expected to be size-dependent: smaller phytoplankton species will be at an advantage when nutrients are scarce due to surface/volume considerations, while species that are similar in size are more likely to be consumed by grazers held in common than are species that differ greatly in size. While phytoplankton competition for nutrients and light has been extensively characterized, size-based interaction through shared grazers has not been represented systematically. The latter situation is particularly unfortunate because small changes in <span class="hlt">community</span> structure can give rise to large changes in ecosystem dynamics and, in inverse modeling, to large changes in estimated parameter values. A simple, systematic way to represent phytoplankton interaction through shared grazers, one resistant to unintended idiosyncrasy of model construction yet capable of representing scientifically justifiable idiosyncrasy, would aid greatly in the modeling process. Here I develop a model structure that allows systematic representation of plankton interaction. In this model, the <span class="hlt">zooplankton</span> <span class="hlt">community</span> is represented as a continuous size spectrum, while phytoplankton species can be represented individually. The mechanistic basis of the model is a shift in the <span class="hlt">zooplankton</span> <span class="hlt">community</span> from carnivory to omnivory to herbivory as phytoplankton density increases. I discuss two limiting approximations in some detail, and fit both to data from the IronEx II experiment. The first limiting case represents a <span class="hlt">community</span> with no grazer-based interaction among phytoplankton species; this approximation illuminates the general structure of the model. In particular, the <span class="hlt">zooplankton</span> spectrum can be viewed as the analog of a control rod in a nuclear reactor, which prevents (or fails to prevent) an exponential bloom of phytoplankton. A second, more complex limiting</p> </li> <li> <p><a target="_blank" onclick="trackOutboundLink('http://adsabs.harvard.edu/abs/2016AGUOSME23B..01R','NASAADS'); return false;" href="http://adsabs.harvard.edu/abs/2016AGUOSME23B..01R"><span>Overheated and Out of Breath: Temperature Regulation of Respiration and Oxygen Supply in Coastal <span class="hlt">Zooplankton</span></span></a></p> <p><a target="_blank" href="http://adsabs.harvard.edu/abstract_service.html">NASA Astrophysics Data System (ADS)</a></p> <p>Roman, M.; Elliott, D. T.; Pierson, J. J.</p> <p>2016-02-01</p> <p>Increasing global coastal hypoxia occurs under a large range of temperature and salinity conditions. Temperature directly influences oxygen solubility in seawater as well as the oxygen demand of <span class="hlt">zooplankton</span>, thus oxygen concentration alone is not sufficient to categorize the biological impact of hypoxia for pelagic organisms. To effectively assess the impacts of hypoxic stress on <span class="hlt">zooplankton</span> habitat space and production, it is necessary to consider the effects of temperature on both oxygen availability and <span class="hlt">zooplankton</span> metabolism. Our analysis and modeling evaluate available oxygen (partial pressure and concentration) in the context of ambient temperature conditions and <span class="hlt">zooplankton</span> oxygen demand. We will present allometric models, accounting for both body size and temperature that predict temperature-dependent oxygen supply and demand in coastal <span class="hlt">zooplankton</span>. Our goal is to develop generalized, functional relationships that describe and quantify the interactive effects of temperature and low oxygen on coastal <span class="hlt">zooplankton</span> that can lead to improved size-structured models that serve to predict impacts of increasing coastal hypoxia on pelagic food webs.</p> </li> <li> <p><a target="_blank" onclick="trackOutboundLink('https://pubs.er.usgs.gov/publication/70168363','USGSPUBS'); return false;" href="https://pubs.er.usgs.gov/publication/70168363"><span>The influence of a severe reservoir drawdown on springtime <span class="hlt">zooplankton</span> and larval fish assemblages in Red Willow Reservoir, Nebraska</span></a></p> <p><a target="_blank" href="http://pubs.er.usgs.gov/pubs/index.jsp?view=adv">USGS Publications Warehouse</a></p> <p>DeBoer, Jason A.; Webber, Christa M.; Dixon, Taylor A.; Pope, Kevin L.</p> <p>2016-01-01</p> <p>Reservoirs can be dynamic systems, often prone to unpredictable and extreme water-level fluctuations, and can be environments where survival is difficult for <span class="hlt">zooplankton</span> and larval fish. Although numerous studies have examined the effects of extreme reservoir drawdown on water quality, few have examined extreme drawdown on both abiotic and biotic characteristics. A fissure in the dam at Red Willow Reservoir in southwest Nebraska necessitated an extreme drawdown; the water level was lowered more than 6 m during a two-month period, reducing reservoir volume by 76%. During the subsequent low-water period (i.e., post-drawdown), spring sampling (April–June) showed dissolved oxygen concentration was lower, while turbidity and chlorophyll-a concentration were greater, relative to pre-drawdown conditions. Additionally, there was an overall increase in <span class="hlt">zooplankton</span> density, although there were differences among taxa, and changes in mean size among taxa, relative to pre-drawdown conditions. <span class="hlt">Zooplankton</span> assemblage <span class="hlt">composition</span> had an average dissimilarity of 19.3% from pre-drawdown to post-drawdown. The ratio of zero to non-zero catches was greater post-drawdown for larval common carp and for all larval fishes combined, whereas we observed no difference for larval gizzard shad. Larval fish assemblage <span class="hlt">composition</span> had an average dissimilarity of 39.7% from pre-drawdown to post-drawdown. Given the likelihood that other dams will need repair or replacement in the near future, it is imperative for effective reservoir management that we anticipate the likely abiotic and biotic responses of reservoir ecosystems as these management actions will continue to alter environmental conditions in reservoirs.</p> </li> <li> <p><a target="_blank" onclick="trackOutboundLink('http://adsabs.harvard.edu/abs/2017PolSc..12...25M','NASAADS'); return false;" href="http://adsabs.harvard.edu/abs/2017PolSc..12...25M"><span>Meso-<span class="hlt">zooplankton</span> abundance and spatial distribution off Lützow-Holm Bay during austral summer 2007-2008</span></a></p> <p><a target="_blank" href="http://adsabs.harvard.edu/abstract_service.html">NASA Astrophysics Data System (ADS)</a></p> <p>Makabe, Ryosuke; Tanimura, Atsushi; Tamura, Takeshi; Hirano, Daisuke; Shimada, Keishi; Hashihama, Fuminori; Fukuchi, Mitsuo</p> <p>2017-06-01</p> <p>To elucidate spatial differences in mesozooplankton <span class="hlt">community</span> structure in local scale, vertical hauls using a 60-μm mesh closing net were carried out off Lützow-Holm Bay in January 2008. All of the <span class="hlt">zooplankton</span> samples collected from three layers (0-100, 100-200, and 200-500 m) at seven stations were dominated by Oithona spp., Oncaea spp., Ctenocalanus citer, Microcalanus pygmaeus, and copepod nauplii. The cluster analysis of mesozooplankton abundances showed three distinct groups according to sampling depth, which appeared to be due to the preferential vertical distribution of dominant copepods. The other cluster analysis on integrated abundance upper 500 m revealed that mesozooplankton <span class="hlt">community</span> structures at stations located on the western and eastern edges of the observation area (Cluster A) differed from those at the central stations (Cluster B). Abundance of copepod nauplii, Oithona spp., and C. citer differed between Clusters A and B, which was likely caused by differences in recruitment and early development in the dominant copepods, being associated with the timing and duration of ice edge blooms. This suggests that such heterogeneity in abundance and recruitment/development of dominant taxa was likely caused by local heterogeneity in sea ice dynamics. This may affect our understanding of <span class="hlt">zooplankton</span> distribution.</p> </li> <li> <p><a target="_blank" onclick="trackOutboundLink('https://pubs.er.usgs.gov/publication/70028536','USGSPUBS'); return false;" href="https://pubs.er.usgs.gov/publication/70028536"><span>Hydroacoustic estimation of <span class="hlt">zooplankton</span> biomass at two shoal complexes in the Apostle Islands Region of Lake Superior</span></a></p> <p><a target="_blank" href="http://pubs.er.usgs.gov/pubs/index.jsp?view=adv">USGS Publications Warehouse</a></p> <p>Holbrook, B.V.; Hrabik, T.R.; Branstrator, D.K.; Yule, D.L.; Stockwell, J.D.</p> <p>2006-01-01</p> <p>Hydroacoustics can be used to assess <span class="hlt">zooplankton</span> populations, however, backscatter must be scaled to be biologically meaningful. In this study, we used a general model to correlate site-specific hydroacoustic backscatter with <span class="hlt">zooplankton</span> dry weight biomass estimated from net tows. The relationship between <span class="hlt">zooplankton</span> dry weight and backscatter was significant (p < 0.001) and explained 76% of the variability in the dry weight data. We applied this regression to hydroacoustic data collected monthly in 2003 and 2004 at two shoals in the Apostle Island Region of Lake Superior. After applying the regression model to convert hydroacoustic backscatter to <span class="hlt">zooplankton</span> dry weight biomass, we used geostatistics to analyze the mean and variance, and ordinary kriging to create spatial <span class="hlt">zooplankton</span> distribution maps. The mean <span class="hlt">zooplankton</span> dry weight biomass estimates from plankton net tows and hydroacoustics were not significantly different (p = 0.19) but the hydroacoustic data had a significantly lower coefficient of variation (p < 0.001). The maps of <span class="hlt">zooplankton</span> distribution illustrated spatial trends in <span class="hlt">zooplankton</span> dry weight biomass that were not discernable from the overall means.</p> </li> <li> <p><a target="_blank" onclick="trackOutboundLink('https://www.ncbi.nlm.nih.gov/pubmed/28369846','PUBMED'); return false;" href="https://www.ncbi.nlm.nih.gov/pubmed/28369846"><span>Habitat size modulates the influence of heterogeneity on species richness patterns in a model <span class="hlt">zooplankton</span> <span class="hlt">community</span>.</span></a></p> <p><a target="_blank" href="https://www.ncbi.nlm.nih.gov/entrez/query.fcgi?DB=pubmed">PubMed</a></p> <p>Schuler, Matthew S; Chase, Jonathan M; Knight, Tiffany M</p> <p>2017-06-01</p> <p>Habitat heterogeneity is a primary mechanism influencing species richness. Despite the general expectation that increased heterogeneity should increase species richness, there is considerable variation in the observed relationship, including many studies that show negative effects of heterogeneity on species richness. One mechanism that can create such disparate results is the predicted trade-off between habitat area and heterogeneity, sometimes called the area-heterogeneity-trade-off (AHTO) hypothesis. The AHTO hypothesis predicts positive effects of heterogeneity on species richness in large habitats, but negative effects in small habitats. We examined the interplay between habitat size and habitat heterogeneity in experimental mesocosms that mimic freshwater ponds, and measured responses in a species-rich <span class="hlt">zooplankton</span> <span class="hlt">community</span>. We used the AHTO hypothesis and related mechanisms to make predictions about how heterogeneity would affect species richness and diversity in large compared to small habitats. We found that heterogeneity had a positive influence on species richness in large, but not small habitats, and that this likely resulted because habitat specialists were able to persist only when habitat size was sufficiently large, consistent with the predictions of the AHTO hypothesis. Our results emphasize the importance of considering context (e.g., habitat size in this case) when investigating the relative importance of ecological drivers of diversity, like heterogeneity. © 2017 by the Ecological Society of America.</p> </li> <li> <p><a target="_blank" onclick="trackOutboundLink('https://www.pubmedcentral.nih.gov/articlerender.fcgi?tool=pmcentrez&artid=3805558','PMC'); return false;" href="https://www.pubmedcentral.nih.gov/articlerender.fcgi?tool=pmcentrez&artid=3805558"><span>Stable Isotope and Signature Fatty Acid Analyses Suggest Reef Manta Rays Feed on Demersal <span class="hlt">Zooplankton</span></span></a></p> <p><a target="_blank" href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?DB=pmc">PubMed Central</a></p> <p>Couturier, Lydie I. E.; Rohner, Christoph A.; Richardson, Anthony J.; Marshall, Andrea D.; Jaine, Fabrice R. A.; Bennett, Michael B.; Townsend, Kathy A.; Weeks, Scarla J.; Nichols, Peter D.</p> <p>2013-01-01</p> <p>Assessing the trophic role and interaction of an animal is key to understanding its general ecology and dynamics. Conventional techniques used to elucidate diet, such as stomach content analysis, are not suitable for large threatened marine species. Non-lethal sampling combined with biochemical methods provides a practical alternative for investigating the feeding ecology of these species. Stable isotope and signature fatty acid analyses of muscle tissue were used for the first time to examine assimilated diet of the reef manta ray Manta alfredi, and were compared with different <span class="hlt">zooplankton</span> functional groups (i.e. near-surface <span class="hlt">zooplankton</span> collected during manta ray feeding events and non-feeding periods, epipelagic <span class="hlt">zooplankton</span>, demersal <span class="hlt">zooplankton</span> and several different <span class="hlt">zooplankton</span> taxa). Stable isotope δ15N values confirmed that the reef manta ray is a secondary consumer. This species had relatively high levels of docosahexaenoic acid (DHA) indicating a flagellate-based food source in the diet, which likely reflects feeding on DHA-rich near-surface and epipelagic <span class="hlt">zooplankton</span>. However, high levels of ω6 polyunsaturated fatty acids and slightly enriched δ13C values in reef manta ray tissue suggest that they do not feed solely on pelagic <span class="hlt">zooplankton</span>, but rather obtain part of their diet from another origin. The closest match was with demersal <span class="hlt">zooplankton</span>, suggesting it is an important component of the reef manta ray diet. The ability to feed on demersal <span class="hlt">zooplankton</span> is likely linked to the horizontal and vertical movement patterns of this giant planktivore. These new insights into the habitat use and feeding ecology of the reef manta ray will assist in the effective evaluation of its conservation needs. PMID:24167562</p> </li> <li> <p><a target="_blank" onclick="trackOutboundLink('http://adsabs.harvard.edu/abs/2018DSRI..133...19Y','NASAADS'); return false;" href="http://adsabs.harvard.edu/abs/2018DSRI..133...19Y"><span>Comparisons between POC and <span class="hlt">zooplankton</span> swimmer flux from sediment traps in the subarctic and subtropical North Pacific</span></a></p> <p><a target="_blank" href="http://adsabs.harvard.edu/abstract_service.html">NASA Astrophysics Data System (ADS)</a></p> <p>Yokoi, Naoya; Abe, Yoshiyuki; Kitamura, Minoru; Honda, Makio C.; Yamaguchi, Atsushi</p> <p>2018-03-01</p> <p>Seasonal changes in <span class="hlt">zooplankton</span> swimmer (ZS) abundance, biomass and <span class="hlt">community</span> structure were evaluated based on samples collected by moored sediment traps at a depth of 200 m in the subarctic (SA) and subtropical (ST) western North Pacific. Based on these samples, we made comparisons on two topics: 1) latitudinal (subarctic vs. subtropical) changes in ZS abundance, biomass and <span class="hlt">community</span> and 2) quantitative differences between the ZS and particle organic carbon (POC) fluxes based on data from moored or drifting sediment traps. The results showed that the ZS flux was greater in the SA (annual mean: 311 ind. m-2 day-1 or 258 mg C m-2 day-1) than in the ST (135 ind. m-2 day-1 or 38 mg C m-2 day-1). The peak ZS flux was observed from July-August in the SA and from April-May in the ST. The dominant taxa were Copepoda and Chaetognatha in the SA and Ostracoda and Mollusca in the ST. These latitudinal differences are likely related to the dominance of large-sized Copepoda in the SA, regional differences in the timing of the spring phytoplankton bloom, and the magnitude and size structure of primary producers. The percent <span class="hlt">composition</span> of ZS to the total C flux (= ZS+POC flux) varied by region: 85-95% in the SA and 47-75% in the ST. These differences between the ZS <span class="hlt">composition</span> and the total C flux are most likely caused by the dominance of large-sized Copepoda (Neocalanus spp. and Eucalanus bungii) in the SA.</p> </li> <li> <p><a target="_blank" onclick="trackOutboundLink('https://www.ncbi.nlm.nih.gov/pubmed/19928460','PUBMED'); return false;" href="https://www.ncbi.nlm.nih.gov/pubmed/19928460"><span><span class="hlt">Composition</span> and abundance of <span class="hlt">zooplankton</span> groups from a coral reef lagoon in Puerto Morelos, Quintana Roo, Mexico, during an annual cycle.</span></a></p> <p><a target="_blank" href="https://www.ncbi.nlm.nih.gov/entrez/query.fcgi?DB=pubmed">PubMed</a></p> <p>Alvarez-Cadena, José N; Ordóñez-López, Uriel; Almaral-Mendivil, Alma Rosa; Uicab-Sabido, Amira</p> <p>2009-09-01</p> <p><span class="hlt">Zooplankton</span> sampling was carried out monthly from January to December 1990 at station A near the coastline, and station B near the reef barrier, in a tropical coral reef lagoon in the Mexican Caribbean Sea. Samplings were made at midnight, near surface, with a conical net (mouth 0.40 m, mesh 330 microm) for 10 min. Salinity varied from 35.1 to 36.3 psu and temperature from 26.3 to 30.2 degrees C. The Bray-Curtis test applied to these results has defined two seasons: the dry season from November to May, and the wet season from June to October. A total of 37 <span class="hlt">zooplankton</span> groups were found. Copepods were the most abundant contributing 49.0% of the total capture with Acartia espinata, Calanopia americana and Farranula gracilis as the most numerous. In the total <span class="hlt">zooplankton</span>, however, cirripeds captured in only 15 samples of 24 were second in abundance (20.9%). Decapods, present all year-round and more abundant during the wet season, were third and contributed 19.2%. The rest of the groups were scarce and only amphipods (2.4%) and larvaceans (2.0%) were relatively abundant. The abundance of captured organisms correlated with the abiotic factors measured, thus, in the dry season, abundance was lower (mean 7.3 orgs/m3), while in the wet season the mean catch was 36.8 orgs/m3.</p> </li> <li> <p><a target="_blank" onclick="trackOutboundLink('https://www.ncbi.nlm.nih.gov/pubmed/27964856','PUBMED'); return false;" href="https://www.ncbi.nlm.nih.gov/pubmed/27964856"><span>Ingestion of microplastics by natural <span class="hlt">zooplankton</span> groups in the northern South China Sea.</span></a></p> <p><a target="_blank" href="https://www.ncbi.nlm.nih.gov/entrez/query.fcgi?DB=pubmed">PubMed</a></p> <p>Sun, Xiaoxia; Li, Qingjie; Zhu, Mingliang; Liang, Junhua; Zheng, Shan; Zhao, Yongfang</p> <p>2017-02-15</p> <p>The ingestion of microplastics by five natural <span class="hlt">zooplankton</span> groups in the northern South China Sea was studied for the first time and two types of sampling nets (505μm and 160μm in mesh size) were compared. The microplastics were detected in <span class="hlt">zooplankton</span> sampled from 16 stations, with the fibrous microplastics accounting for the largest proportion (70%). The main component of the found microplastics was polyester. The average length of the microplastics was 125μm and 167μm for Nets I and II, respectively. The encounter rates of microplastics/<span class="hlt">zooplankton</span> increased with trophic levels. The average encounter rate of microplastics/<span class="hlt">zooplankton</span> was 5%, 15%, 34%, 49%, and 120% for Net I, and 8%, 21%, 47%, 60%, and 143% for Net II for copepods, chaetognaths, jellyfish, shrimp, and fish larvae, respectively. The average abundance of microplastics that were ingested by <span class="hlt">zooplankton</span> was 4.1pieces/m 3 for Net I and 131.5pieces/m 3 for Net II. Copyright © 2016 Elsevier Ltd. All rights reserved.</p> </li> </ol> <div class="pull-right"> <ul class="pagination"> <li><a href="#" onclick='return showDiv("page_1");'>«</a></li> <li><a href="#" onclick='return showDiv("page_10");'>10</a></li> <li><a href="#" onclick='return showDiv("page_11");'>11</a></li> <li class="active"><span>12</span></li> <li><a href="#" onclick='return showDiv("page_13");'>13</a></li> <li><a href="#" onclick='return showDiv("page_14");'>14</a></li> <li><a href="#" onclick='return showDiv("page_25");'>»</a></li> </ul> </div> </div><!-- col-sm-12 --> </div><!-- row --> </div><!-- page_12 --> <div id="page_13" class="hiddenDiv"> <div class="row"> <div class="col-sm-12"> <div class="pull-right"> <ul class="pagination"> <li><a href="#" onclick='return showDiv("page_1");'>«</a></li> <li><a href="#" onclick='return showDiv("page_11");'>11</a></li> <li><a href="#" onclick='return showDiv("page_12");'>12</a></li> <li class="active"><span>13</span></li> <li><a href="#" onclick='return showDiv("page_14");'>14</a></li> <li><a href="#" onclick='return showDiv("page_15");'>15</a></li> <li><a href="#" onclick='return showDiv("page_25");'>»</a></li> </ul> </div> </div> </div> <div class="row"> <div class="col-sm-12"> <ol class="result-class" start="241"> <li> <p><a target="_blank" onclick="trackOutboundLink('https://www.pubmedcentral.nih.gov/articlerender.fcgi?tool=pmcentrez&artid=5762190','PMC'); return false;" href="https://www.pubmedcentral.nih.gov/articlerender.fcgi?tool=pmcentrez&artid=5762190"><span>Use of an Autonomous Surface Vehicle reveals small-scale diel vertical migrations of <span class="hlt">zooplankton</span> and susceptibility to light pollution under low solar irradiance</span></a></p> <p><a target="_blank" href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?DB=pmc">PubMed Central</a></p> <p>Ludvigsen, Martin; Berge, Jørgen; Geoffroy, Maxime; Cohen, Jonathan H.; De La Torre, Pedro R.; Nornes, Stein M.; Singh, Hanumant; Sørensen, Asgeir J.; Daase, Malin; Johnsen, Geir</p> <p>2018-01-01</p> <p>Light is a major cue for nearly all life on Earth. However, most of our knowledge concerning the importance of light is based on organisms’ response to light during daytime, including the dusk and dawn phase. When it is dark, light is most often considered as pollution, with increasing appreciation of its negative ecological effects. Using an Autonomous Surface Vehicle fitted with a hyperspectral irradiance sensor and an acoustic profiler, we detected and quantified the behavior of <span class="hlt">zooplankton</span> in an unpolluted light environment in the high Arctic polar night and compared the results with that from a light-polluted environment close to our research vessels. First, in environments free of light pollution, the <span class="hlt">zooplankton</span> <span class="hlt">community</span> is intimately connected to the ambient light regime and performs synchronized diel vertical migrations in the upper 30 m despite the sun never rising above the horizon. Second, the vast majority of the pelagic <span class="hlt">community</span> exhibits a strong light-escape response in the presence of artificial light, observed down to 100 m. We conclude that artificial light from traditional sampling platforms affects the <span class="hlt">zooplankton</span> <span class="hlt">community</span> to a degree where it is impossible to examine its abundance and natural rhythms within the upper 100 m. This study underscores the need to adjust sampling platforms, particularly in dim-light conditions, to capture relevant physical and biological data for ecological studies. It also highlights a previously unchartered susceptibility to light pollution in a region destined to see significant changes in light climate due to a reduced ice cover and an increased anthropogenic activity. PMID:29326985</p> </li> <li> <p><a target="_blank" onclick="trackOutboundLink('https://www.ncbi.nlm.nih.gov/pubmed/29326985','PUBMED'); return false;" href="https://www.ncbi.nlm.nih.gov/pubmed/29326985"><span>Use of an Autonomous Surface Vehicle reveals small-scale diel vertical migrations of <span class="hlt">zooplankton</span> and susceptibility to light pollution under low solar irradiance.</span></a></p> <p><a target="_blank" href="https://www.ncbi.nlm.nih.gov/entrez/query.fcgi?DB=pubmed">PubMed</a></p> <p>Ludvigsen, Martin; Berge, Jørgen; Geoffroy, Maxime; Cohen, Jonathan H; De La Torre, Pedro R; Nornes, Stein M; Singh, Hanumant; Sørensen, Asgeir J; Daase, Malin; Johnsen, Geir</p> <p>2018-01-01</p> <p>Light is a major cue for nearly all life on Earth. However, most of our knowledge concerning the importance of light is based on organisms' response to light during daytime, including the dusk and dawn phase. When it is dark, light is most often considered as pollution, with increasing appreciation of its negative ecological effects. Using an Autonomous Surface Vehicle fitted with a hyperspectral irradiance sensor and an acoustic profiler, we detected and quantified the behavior of <span class="hlt">zooplankton</span> in an unpolluted light environment in the high Arctic polar night and compared the results with that from a light-polluted environment close to our research vessels. First, in environments free of light pollution, the <span class="hlt">zooplankton</span> <span class="hlt">community</span> is intimately connected to the ambient light regime and performs synchronized diel vertical migrations in the upper 30 m despite the sun never rising above the horizon. Second, the vast majority of the pelagic <span class="hlt">community</span> exhibits a strong light-escape response in the presence of artificial light, observed down to 100 m. We conclude that artificial light from traditional sampling platforms affects the <span class="hlt">zooplankton</span> <span class="hlt">community</span> to a degree where it is impossible to examine its abundance and natural rhythms within the upper 100 m. This study underscores the need to adjust sampling platforms, particularly in dim-light conditions, to capture relevant physical and biological data for ecological studies. It also highlights a previously unchartered susceptibility to light pollution in a region destined to see significant changes in light climate due to a reduced ice cover and an increased anthropogenic activity.</p> </li> <li> <p><a target="_blank" onclick="trackOutboundLink('http://adsabs.harvard.edu/abs/2013DSRII..98..269C','NASAADS'); return false;" href="http://adsabs.harvard.edu/abs/2013DSRII..98..269C"><span><span class="hlt">Zooplankton</span> and micronekton biovolume at the Mid-Atlantic Ridge and Charlie-Gibbs Fracture Zone estimated by multi-frequency acoustic survey</span></a></p> <p><a target="_blank" href="http://adsabs.harvard.edu/abstract_service.html">NASA Astrophysics Data System (ADS)</a></p> <p>Cox, Martin J.; Letessier, Tom B.; Brierley, Andrew S.</p> <p>2013-12-01</p> <p>To examine the potential influence of the Mid-Atlantic Ridge and Charlie-Gibbs Fracture Zone on <span class="hlt">zooplankton</span> and micronekton biovolume in the upper 200 m of the water column, multi-frequency acoustic data (18, 38, 70, 120 and 200 kHz) were acquired at four study sites from the RRS James Cook using hull-mounted scientific echosounders. Multi-frequency inversion techniques were employed to classify each 20 m depth×500 m along-track region of the water column to a <span class="hlt">zooplankton</span> or micronekton acoustic scatterering class, such as copepod or euphausiid, and to estimate biovolume. We found a highly significant north-south (across fracture zone) difference in areal biovolume (p-value=0.01) but no significant east-west (across ridge) difference (p-value=0.07). Areal biovolume at all sites was dominated by the acoustic scatter class ‘euphausiid’, with higher biovolumes occurring in the southern stations. Our acoustic observations suggest the existence of different pelagic <span class="hlt">communities</span> to the north and south of the SPF, with the southern <span class="hlt">community</span> having a greater proportion of fish.</p> </li> <li> <p><a target="_blank" onclick="trackOutboundLink('https://cfpub.epa.gov/si/si_public_record_report.cfm?dirEntryId=80225&keyword=hplc&actType=&TIMSType=+&TIMSSubTypeID=&DEID=&epaNumber=&ntisID=&archiveStatus=Both&ombCat=Any&dateBeginCreated=&dateEndCreated=&dateBeginPublishedPresented=&dateEndPublishedPresented=&dateBeginUpdated=&dateEndUpdated=&dateBeginCompleted=&dateEndCompleted=&personID=&role=Any&journalID=&publisherID=&sortBy=revisionDate&count=50','EPA-EIMS'); return false;" href="https://cfpub.epa.gov/si/si_public_record_report.cfm?dirEntryId=80225&keyword=hplc&actType=&TIMSType=+&TIMSSubTypeID=&DEID=&epaNumber=&ntisID=&archiveStatus=Both&ombCat=Any&dateBeginCreated=&dateEndCreated=&dateBeginPublishedPresented=&dateEndPublishedPresented=&dateBeginUpdated=&dateEndUpdated=&dateBeginCompleted=&dateEndCompleted=&personID=&role=Any&journalID=&publisherID=&sortBy=revisionDate&count=50"><span>PHYTOPLANKTON AND <span class="hlt">ZOOPLANKTON</span> SEASONAL DYNAMICS IN A SUBTROPICAL ESTUARY: IMPORTANCE OF CYANOBACTERIA</span></a></p> <p><a target="_blank" href="http://oaspub.epa.gov/eims/query.page">EPA Science Inventory</a></p> <p></p> <p></p> <p>Murrell, Michael C. and Emile M. Lores. 2004. Phytoplankton and <span class="hlt">Zooplankton</span> Seasonal Dynamics in a Subtropical Estuary: Importance of Cyanobacteria. J. Plankton Res. 26(3):371-382. (ERL,GB 1190). <br><br>A seasonal study of phytoplankton and <span class="hlt">zooplankton</span> was conducted from 1999-20...</p> </li> <li> <p><a target="_blank" onclick="trackOutboundLink('http://adsabs.harvard.edu/abs/2016PolSc..10..335M','NASAADS'); return false;" href="http://adsabs.harvard.edu/abs/2016PolSc..10..335M"><span>Spatial and geographical changes in the mesozooplankton <span class="hlt">community</span> in the Bering and Chukchi Seas during the summers of 2007 and 2008</span></a></p> <p><a target="_blank" href="http://adsabs.harvard.edu/abstract_service.html">NASA Astrophysics Data System (ADS)</a></p> <p>Matsuno, Kohei; Landeira Sanchez, Jose M.; Yamaguchi, Atsushi; Hirawake, Toru; Kikuchi, Takashi</p> <p>2016-09-01</p> <p>From July to August 2007 and June to July 2008, the horizontal/geographical changes in the <span class="hlt">zooplankton</span> <span class="hlt">community</span> in the Bering and Chukchi Seas were studied. The geographical patterns, which were common for these two years, were observed for salinity, chlorophyll a (Chl. a), <span class="hlt">zooplankton</span> chaetognaths, hydrozoans and the whole <span class="hlt">zooplankton</span> <span class="hlt">community</span>. Among them, the patterns of salinity and Chl. a were related with the horizontal distribution of the water masses. The distributions of the two carnivorous taxa were correlated with their prey (copepods or barnacle larvae). The analysis of the structural equation model (SEM) revealed that the horizontal distribution of the <span class="hlt">zooplankton</span> abundance and biomass were governed by the different taxa. Thus, the <span class="hlt">zooplankton</span> abundance was governed by the numerically dominant but smaller-bodied taxa, such as the barnacle larvae and copepod Pseudocalanus spp., while the <span class="hlt">zooplankton</span> biomass was determined by the large-bodied copepods, such as Calanus glacialis/marshallae and Eucalanus bungii.</p> </li> <li> <p><a target="_blank" onclick="trackOutboundLink('http://adsabs.harvard.edu/abs/2016AGUOSIS53A..02B','NASAADS'); return false;" href="http://adsabs.harvard.edu/abs/2016AGUOSIS53A..02B"><span>Determine Age-structure of Gelatinous <span class="hlt">Zooplankton</span> Using Optical Coherence Tomography</span></a></p> <p><a target="_blank" href="http://adsabs.harvard.edu/abstract_service.html">NASA Astrophysics Data System (ADS)</a></p> <p>Bi, H.; Shahrestani, S.; He, Y.</p> <p>2016-02-01</p> <p>Gelatinous are delicate and transparent by nature, but are conspicuous in many ecosystems when in bloom. Their proliferations are a bothersome and costly nuisance and influencing important food webs and species interactions. More importantly, gelatinous <span class="hlt">zooplankton</span> respond to climate change rapidly and understanding their upsurge needs information on their recruitment and population dynamics which in turn require their age-structure. However, ageing gelatinous <span class="hlt">zooplankton</span> is often restricted by the fact that they shrink under unfavorable conditions. In the present study, we examine the potential of using optical coherence tomography (OCT) to age gelatinous <span class="hlt">zooplankton</span>. OCT is a non-invasive imaging technique that uses light waves to examine 2D or 3D structure of target objects at a resolution of 3-5 µm. We were able to successfully capture both 3D and 2D images of sea nettle muscle fibers. Preliminary results on ctenophores will be discussed. Overall, this non-destructive sampling allows us to scan and capture images of mesoglea from jellyfish cultured in the lab, using the same individual repeatedly through time, documenting its growth which will provide precise measurements to construct an age key that will be applied to gelatinous <span class="hlt">zooplankton</span> captured in the field. Coupled with information on abundance, we can start to quantify their recruitment timing and success rate.</p> </li> <li> <p><a target="_blank" onclick="trackOutboundLink('http://adsabs.harvard.edu/abs/2017EGUGA..1917930C','NASAADS'); return false;" href="http://adsabs.harvard.edu/abs/2017EGUGA..1917930C"><span>SEAPODYM-LTL: a parsimonious <span class="hlt">zooplankton</span> dynamic biomass model</span></a></p> <p><a target="_blank" href="http://adsabs.harvard.edu/abstract_service.html">NASA Astrophysics Data System (ADS)</a></p> <p>Conchon, Anna; Lehodey, Patrick; Gehlen, Marion; Titaud, Olivier; Senina, Inna; Séférian, Roland</p> <p>2017-04-01</p> <p>Mesozooplankton organisms are of critical importance for the understanding of early life history of most fish stocks, as well as the nutrient cycles in the ocean. Ongoing climate change and the need for improved approaches to the management of living marine resources has driven recent advances in <span class="hlt">zooplankton</span> modelling. The classical modeling approach tends to describe the whole biogeochemical and plankton cycle with increasing complexity. We propose here a different and parsimonious <span class="hlt">zooplankton</span> dynamic biomass model (SEAPODYM-LTL) that is cost efficient and can be advantageously coupled with primary production estimated either from satellite derived ocean color data or biogeochemical models. In addition, the adjoint code of the model is developed allowing a robust optimization approach for estimating the few parameters of the model. In this study, we run the first optimization experiments using a global database of climatological <span class="hlt">zooplankton</span> biomass data and we make a comparative analysis to assess the importance of resolution and primary production inputs on model fit to observations. We also compare SEAPODYM-LTL outputs to those produced by a more complex biogeochemical model (PISCES) but sharing the same physical forcings.</p> </li> <li> <p><a target="_blank" onclick="trackOutboundLink('https://pubs.er.usgs.gov/publication/70034891','USGSPUBS'); return false;" href="https://pubs.er.usgs.gov/publication/70034891"><span>Lake St. Clair <span class="hlt">zooplankton</span>: Evidence for post-Dreissena changes</span></a></p> <p><a target="_blank" href="http://pubs.er.usgs.gov/pubs/index.jsp?view=adv">USGS Publications Warehouse</a></p> <p>David, Katherine A.; Davis, Bruce M.; Hunter, R. Douglas</p> <p>2009-01-01</p> <p>We surveyed the <span class="hlt">zooplankton</span> of Lake St. Clair at 12 sites over ten dates from May to October 2000. Mean <span class="hlt">zooplankton</span> density by site and date was 168.6 individuals/L, with Dreissena spp. veligers the most abundant taxon at 122.7 individuals/L. Rotifers, copepods, and cladocerans were far lower in mean abundance than in the early 1970s (rotifers, 20.9/L; copepods, 18.1/L; and cladocerans, 6.8/L). Species richness of <span class="hlt">zooplankton</span> taxa in 2000 was 147, which was virtually unchanged from that of the first reported survey in 1894. Overall, the decline in abundance was greatest for rotifers (-90%) and about equal for cladocerans (-69%) and copepods (-66%). The decrease in abundance of Daphnia spp. was especially dramatic in Canadian waters. The decline in the southeastern region was significant for all three major groups of <span class="hlt">zooplankton</span>, whereas in the northwestern region the decline was significant only for rotifers. From June to August 2000, Lake St. Clair open waters were numerically dominated by Dreissena spp. veligers, with a reduced abundance of rotifers and crustaceans compared to pre-Dreissena spp. surveys. Mean nutrient concentrations were not different from the 1970s, but Secchi depth (greater) and chlorophyll a concentration (lower) were. Disproportionate reduction in rotifer abundance is consistent with hypotheses implicating direct consumption by settled Dreissena spp. Reduction of crustaceans is likely due to more complex interactions including removal of nauplii as well as resource competition for phytoplankton.</p> </li> <li> <p><a target="_blank" onclick="trackOutboundLink('http://adsabs.harvard.edu/abs/2006DSRI...53.1203H','NASAADS'); return false;" href="http://adsabs.harvard.edu/abs/2006DSRI...53.1203H"><span>The seasonal succession of <span class="hlt">zooplankton</span> in the Southern Ocean south of Australia, part II: The Sub-Antarctic to Polar Frontal Zones</span></a></p> <p><a target="_blank" href="http://adsabs.harvard.edu/abstract_service.html">NASA Astrophysics Data System (ADS)</a></p> <p>Hunt, Brian P. V.; Hosie, Graham W.</p> <p>2006-07-01</p> <p>Between October 2001 and March 2002 six transects were completed at monthly intervals in the Sub-Antarctic Zone (SAZ) and Inter-Sub-Antarctic Front Zone (ISAFZ)/Polar Frontal Zone (PFZ) in the Southern Ocean south of Australia. <span class="hlt">Zooplankton</span> were collected with a Continuous Plankton Recorder and NORPAC net and multivariate analysis was used to analyse the seasonal succession of <span class="hlt">communities</span>. Despite strong, seasonally consistent, biogeographic differences between the SAZ and ISAFZ/PFZ, <span class="hlt">community</span> structure in all zones was dominated by a suite of common taxa. These included the ubiquitous Oithona similis, foraminiferans and appendicularians (Core taxa), occurring in >97% of samples and contributing an average of 75% to total sample abundance, and Calanus simillimus, Rhincalanus gigas, Ctenocalanus citer, Clausocalanus brevipes, Clausocalanus laticeps, Oithona frigida, Limacina spp. and chaetognaths (Summer taxa), present in >57% of samples and occurring at seasonally high densities. Because of the dominance of the Core and Summer taxa, the seasonal succession was most clearly evident as a change in <span class="hlt">zooplankton</span> densities. In October densities averaged <15 ind m -3, rising to 52 ind m -3 (max=92 ind m -3) in November, and subsequently increasing slowly through to January (ave=115 ind m -3; max=255 ind m -3). Densities peaked abruptly in February (ave=634 ind m -3; max=1593 ind m -3), and remained relatively high in March (ave=193 ind m -3; max=789 ind m -3). A latitudinal lag in seasonal development was observed with peak densities occurring first in the SAZ (February) and then in the ISAFZ/PFZ (March). The seasonal <span class="hlt">community</span> succession was strongly influenced by species population cycles. The role of <span class="hlt">zooplankton</span> in biogeochemical cycling in the SAZ and ISAFZ/PFZ was discussed in the light of past sediment trap data collected from the study area.</p> </li> <li> <p><a target="_blank" onclick="trackOutboundLink('https://www.ncbi.nlm.nih.gov/pubmed/27208756','PUBMED'); return false;" href="https://www.ncbi.nlm.nih.gov/pubmed/27208756"><span>If you see one, have you seen them all?: <span class="hlt">Community</span>-wide effects of insecticide cross-resistance in <span class="hlt">zooplankton</span> populations near and far from agriculture.</span></a></p> <p><a target="_blank" href="https://www.ncbi.nlm.nih.gov/entrez/query.fcgi?DB=pubmed">PubMed</a></p> <p>Bendis, Randall J; Relyea, Rick A</p> <p>2016-08-01</p> <p>The worldwide use of pesticides has led to increases in agricultural yields by reducing crop losses. However, increased pesticide use has resulted in pesticide-resistant pest species and recent studies have discovered pesticide-resistance in non-target species living close to farms. Such increased tolerance not only affects the species, but can alter the entire food web. Given that some species can evolve not only resistance to a single pesticide, but also cross-resistance to other pesticides that share the same mode of action, one would predict that cross-resistance to pesticides would also have effects on the entire <span class="hlt">community</span> and affect <span class="hlt">community</span> stability. To address this hypothesis, we conducted an outdoor mesocosm experiment comprised of 200 identical aquatic <span class="hlt">communities</span> with phytoplankton, periphyton, and leopard frog (Lithobates pipiens) tadpoles. To these <span class="hlt">communities</span>, we added one of four Daphnia pulex populations that we previously discovered were either resistant or sensitive to the insecticide of chlorpyrifos as a result of living close to or far from agriculture, respectively. We then exposed the <span class="hlt">communities</span> to either no insecticide or three different concentrations of AChE-inhibiting insecticides (chlorpyrifos, malathion or carbaryl) or sodium channel-inhibiting insecticides (permethrin or cypermethrin). We discovered that <span class="hlt">communities</span> containing sensitive Daphnia pulex experienced phytoplankton blooms and subsequent cascades through all trophic groups including amphibians at moderate to high concentrations of all five insecticides. However, <span class="hlt">communities</span> containing resistant D. pulex were buffered from these effects at low to moderate concentrations of all AChE-inhibiting insecticides, but were not buffered against the pyrethroid insecticides. These data suggest that a simple change in the population-level resistance of <span class="hlt">zooplankton</span> to a single insecticide can have widespread consequences for <span class="hlt">community</span> stability and that the effects can be extrapolated</p> </li> <li> <p><a target="_blank" onclick="trackOutboundLink('http://adsabs.harvard.edu/abs/2015ECSS..153..156M','NASAADS'); return false;" href="http://adsabs.harvard.edu/abs/2015ECSS..153..156M"><span>Plankton <span class="hlt">community</span> structure and connectivity in the Kimberley-Browse region of NW Australia</span></a></p> <p><a target="_blank" href="http://adsabs.harvard.edu/abstract_service.html">NASA Astrophysics Data System (ADS)</a></p> <p>McKinnon, A. D.; Duggan, S.; Holliday, D.; Brinkman, R.</p> <p>2015-02-01</p> <p>We describe the <span class="hlt">zooplankton</span> and ichthyoplankton <span class="hlt">communities</span> of coastal waters of the Kimberley coast (North West Australia), sampled in macrotidal Camden Sound during both the wet and dry seasons of 2011, and compare these to six other Kimberley embayments during the wet season of 2013. <span class="hlt">Zooplankton</span> abundance in Camden Sound was 7038 ± 3913 SD ind. m-3 in the wet season and 1892 ± 708 SD ind. m-3 in the dry season, with copepods accounting for 85% by number. In all, 78 species of copepods were recorded, with the families Paracalanidae and Oithonidae dominant. In Camden Sound, 48 families of larval fish occurred, with ichthyoplankton more abundant in the wet season than the dry season (1.16 ± 0.2 ind. m-3 cf 0.76 ± 0.2 ind. m-3). Larval gobiids (Subfamily Gobiinae) were most abundant, with other common families associated with either pelagic or soft-bottom habitats as adults. Multivariate analyses of both copepod and ichthyoplankton <span class="hlt">communities</span> demonstrated strong seasonal contrasts, although an along-shelf gradient in copepod <span class="hlt">community</span> <span class="hlt">composition</span> was apparent along the embayments sampled in 2013. There was little spatial variation in plankton <span class="hlt">communities</span> within Camden Sound as a result of the large tidal range (up to 11.7 m, with 2.5 m-1 velocities), although gradients in abundance and <span class="hlt">composition</span> on cross-shelf transects occurred in the more northern embayments that had a lower tidal range, such as Napier Broome Bay. Copepod <span class="hlt">communities</span> of the Kimberley-Browse region were placed in regional perspective by multivariate analyses of similar data collected in the eastern Indian Ocean at Scott Reef, in the Arafura Sea and on the southern North West (NW) shelf. The plankton <span class="hlt">communities</span> of the NW shelf form a series of along-shore metacommunities linked by advection, with weaker cross-shelf connectivity. The presence of the larvae of mesopelagic fishes of the family Myctophidae in coastal waters confirms seasonal cross-shelf connectivity.</p> </li> <li> <p><a target="_blank" onclick="trackOutboundLink('http://adsabs.harvard.edu/abs/2018PrOce.164...75T','NASAADS'); return false;" href="http://adsabs.harvard.edu/abs/2018PrOce.164...75T"><span>In situ camera observations reveal major role of <span class="hlt">zooplankton</span> in modulating marine snow formation during an upwelling-induced plankton bloom</span></a></p> <p><a target="_blank" href="http://adsabs.harvard.edu/abstract_service.html">NASA Astrophysics Data System (ADS)</a></p> <p>Taucher, Jan; Stange, Paul; Algueró-Muñiz, María; Bach, Lennart T.; Nauendorf, Alice; Kolzenburg, Regina; Büdenbender, Jan; Riebesell, Ulf</p> <p>2018-05-01</p> <p> measurements of particle sinking velocity to compute instantaneous (potential) vertical mass flux. However, somewhat surprisingly, we did not find a coherent relationship between our computed flux and measured vertical mass flux (collected by sediment traps in 15 m depth). Although the onset of measured vertical flux roughly coincided with the emergence of marine snow, we found substantial variability in mass flux among mesocosms that was not related to marine snow numbers, and was instead presumably driven by <span class="hlt">zooplankton</span>-mediated alteration of sinking biomass and export of small particles (fecal pellets). Altogether, our findings highlight the role of <span class="hlt">zooplankton</span> <span class="hlt">community</span> <span class="hlt">composition</span> and feeding interactions on particle size spectra and formation of marine snow aggregates, with important implications for our understanding of particle aggregation and vertical flux of organic matter in the ocean.</p> </li> <li> <p><a target="_blank" onclick="trackOutboundLink('https://www.ncbi.nlm.nih.gov/pubmed/25373827','PUBMED'); return false;" href="https://www.ncbi.nlm.nih.gov/pubmed/25373827"><span>Food web efficiency differs between humic and clear water lake <span class="hlt">communities</span> in response to nutrients and light.</span></a></p> <p><a target="_blank" href="https://www.ncbi.nlm.nih.gov/entrez/query.fcgi?DB=pubmed">PubMed</a></p> <p>Faithfull, C L; Mathisen, P; Wenzel, A; Bergström, A K; Vrede, T</p> <p>2015-03-01</p> <p>This study demonstrates that clear and humic freshwater pelagic <span class="hlt">communities</span> respond differently to the same environmental stressors, i.e. nutrient and light availability. Thus, effects on humic <span class="hlt">communities</span> cannot be generalized from existing knowledge about these environmental stressors on clear water <span class="hlt">communities</span>. Small humic lakes are the most numerous type of lake in the boreal zone, but little is known about how these lakes will respond to increased inflows of nutrients and terrestrial dissolved organic C (t-DOC) due to climate change and increased human impacts. Therefore, we compared the effects of nutrient addition and light availability on pelagic humic and clear water lake <span class="hlt">communities</span> in a mesocosm experiment. When nutrients were added, phytoplankton production (PPr) increased in both <span class="hlt">communities</span>, but pelagic energy mobilization (PEM) and bacterial production (BP) only increased in the humic <span class="hlt">community</span>. At low light conditions, the addition of nutrients led to increased PPr only in the humic <span class="hlt">community</span>, suggesting that, in contrast to the clear water <span class="hlt">community</span>, humic phytoplankton were already adapted to lower ambient light levels. Low light significantly reduced PPr and PEM in the clear water <span class="hlt">community</span>, but without reducing total <span class="hlt">zooplankton</span> production, which resulted in a doubling of food web efficiency (FWE = total <span class="hlt">zooplankton</span> production/PEM). However, total <span class="hlt">zooplankton</span> production was not correlated with PEM, PPr, BP, PPr:BP or C:nutrient stoichiometry for either <span class="hlt">community</span> type. Therefore, other factors such as food chain length, food quality, ultra-violet radiation or duration of the experiment, must have determined total <span class="hlt">zooplankton</span> production and ultimately FWE.</p> </li> <li> <p><a target="_blank" onclick="trackOutboundLink('https://www.ncbi.nlm.nih.gov/pubmed/29095892','PUBMED'); return false;" href="https://www.ncbi.nlm.nih.gov/pubmed/29095892"><span>Predicting temporal variation in <span class="hlt">zooplankton</span> beta diversity is challenging.</span></a></p> <p><a target="_blank" href="https://www.ncbi.nlm.nih.gov/entrez/query.fcgi?DB=pubmed">PubMed</a></p> <p>Lopes, Vanessa Guimarães; Castelo Branco, Christina W; Kozlowsky-Suzuki, Betina; Sousa-Filho, Izidro F; Souza, Leonardo Coimbra E; Bini, Luis Mauricio</p> <p>2017-01-01</p> <p>Beta diversity, the spatial variation in species <span class="hlt">composition</span>, has been related to different explanatory variables, including environmental heterogeneity, productivity and connectivity. Using a long-term time series of <span class="hlt">zooplankton</span> data collected over 62 months in a tropical reservoir (Ribeirão das Lajes Reservoir, Rio de Janeiro State, Brazil), we tested whether beta diversity (as measured across six sites distributed along the main axis of the reservoir) was correlated with environmental heterogeneity (spatial environmental variation in a given month), chlorophyll-a concentration (a surrogate for productivity) and water level. We did not found evidence for the role of these predictors, suggesting the need to reevaluate predictions or at least to search for better surrogates of the processes that hypothetically control beta diversity variation. However, beta diversity declined over time, which is consistent with the process of biotic homogenization, a worldwide cause of concern.</p> </li> <li> <p><a target="_blank" onclick="trackOutboundLink('https://cfpub.epa.gov/si/si_public_record_report.cfm?dirEntryId=104900&keyword=principle+AND+management&actType=&TIMSType=+&TIMSSubTypeID=&DEID=&epaNumber=&ntisID=&archiveStatus=Both&ombCat=Any&dateBeginCreated=&dateEndCreated=&dateBeginPublishedPresented=&dateEndPublishedPresented=&dateBeginUpdated=&dateEndUpdated=&dateBeginCompleted=&dateEndCompleted=&personID=&role=Any&journalID=&publisherID=&sortBy=revisionDate&count=50','EPA-EIMS'); return false;" href="https://cfpub.epa.gov/si/si_public_record_report.cfm?dirEntryId=104900&keyword=principle+AND+management&actType=&TIMSType=+&TIMSSubTypeID=&DEID=&epaNumber=&ntisID=&archiveStatus=Both&ombCat=Any&dateBeginCreated=&dateEndCreated=&dateBeginPublishedPresented=&dateEndPublishedPresented=&dateBeginUpdated=&dateEndUpdated=&dateBeginCompleted=&dateEndCompleted=&personID=&role=Any&journalID=&publisherID=&sortBy=revisionDate&count=50"><span>EVALUATION OF OPTICALLY ACQUIRED <span class="hlt">ZOOPLANKTON</span> SIZE-SPECTRUM DATA AS A POTENTIAL TOOL FOR ASSESSMENT OF CONDITION IN THE GREAT LAKES</span></a></p> <p><a target="_blank" href="http://oaspub.epa.gov/eims/query.page">EPA Science Inventory</a></p> <p></p> <p></p> <p>An optical <span class="hlt">zooplankton</span> counter (OPC) potentially provides as assessment tool for <span class="hlt">zooplankton</span> condition in ecosystems that is rapid, economical, and spatially extensive. We collected <span class="hlt">zooplankton</span> data with an optical <span class="hlt">zooplankton</span> counter in 20 near-shore regions of four of the Laure...</p> </li> <li> <p><a target="_blank" onclick="trackOutboundLink('http://adsabs.harvard.edu/abs/2009DSRII..56.1882Z','NASAADS'); return false;" href="http://adsabs.harvard.edu/abs/2009DSRII..56.1882Z"><span>Upslope transport of near-bed <span class="hlt">zooplankton</span></span></a></p> <p><a target="_blank" href="http://adsabs.harvard.edu/abstract_service.html">NASA Astrophysics Data System (ADS)</a></p> <p>Zimmer, Cheryl Ann</p> <p>2009-09-01</p> <p><span class="hlt">Zooplankton</span> residing just above the deep-sea floor is an important component of the benthic/benthopelagic food chain. Consuming planktonic particulates and organisms, holoplankton and meroplankton are prey for fish and large invertebrates. Mechanisms controlling their abundances have been explored over relatively long time scales (months to years). Here, <span class="hlt">zooplankton</span> were sampled every 2 h for 2.2 d using a moored, automated, serial <span class="hlt">zooplankton</span> pump. The physical regime (currents and temperature) 1-100 m above bottom was measured during an inclusive 24-d period. The study site was located on the upper continental slope (750 m) of the Mid-Atlantic Bight, between the productive shelf and more impoverished rise and abyss. The coupled biological and physical records indicated tidally driven, net upslope transport of the holoplankton. The copepod (74.5% of collections) time series showed marked periodicity with a peak frequency of ˜13 h, approximately the diurnal tide (Fourier analysis). Local maxima corresponded with minimal water temperatures. Moreover, tidal cross-slope flow was highly coherent and 90° out of phase with temperature. Thus, maximal copepod concentrations, originating in colder deeper water, would be transported up the slope by the tide. Estimated net displacement of ˜1 km/d would deliver the animals to continental-shelf depths within a couple weeks. Time series of the much less abundant larvaceans (urochordates) (15.3%) and polychaete larvae (8.9%) showed periodicities with peak frequencies of 8-9 h. Statistical significance of the periodic signals could not be determined due to low numbers. Revealing holoplankton dynamics on scales of hours, this study may contribute to understanding of, for example, copepod feeding and aggregation near the deep-sea floor.</p> </li> <li> <p><a target="_blank" onclick="trackOutboundLink('https://www.ncbi.nlm.nih.gov/pubmed/27510848','PUBMED'); return false;" href="https://www.ncbi.nlm.nih.gov/pubmed/27510848"><span>Terrestrial carbohydrates support freshwater <span class="hlt">zooplankton</span> during phytoplankton deficiency.</span></a></p> <p><a target="_blank" href="https://www.ncbi.nlm.nih.gov/entrez/query.fcgi?DB=pubmed">PubMed</a></p> <p>Taipale, Sami J; Galloway, Aaron W E; Aalto, Sanni L; Kahilainen, Kimmo K; Strandberg, Ursula; Kankaala, Paula</p> <p>2016-08-11</p> <p>Freshwater food webs can be partly supported by terrestrial primary production, often deriving from plant litter of surrounding catchment vegetation. Although consisting mainly of poorly bioavailable lignin, with low protein and lipid content, the carbohydrates from fallen tree leaves and shoreline vegetation may be utilized by aquatic consumers. Here we show that during phytoplankton deficiency, <span class="hlt">zooplankton</span> (Daphnia magna) can benefit from terrestrial particulate organic matter by using terrestrial-origin carbohydrates for energy and sparing essential fatty acids and amino acids for somatic growth and reproduction. Assimilated terrestrial-origin fatty acids from shoreline reed particles exceeded available diet, indicating that Daphnia may convert a part of their dietary carbohydrates to saturated fatty acids. This conversion was not observed with birch leaf diets, which had lower carbohydrate content. Subsequent analysis of 21 boreal and subarctic lakes showed that diet of herbivorous <span class="hlt">zooplankton</span> is mainly based on high-quality phytoplankton rich in essential polyunsaturated fatty acids. The proportion of low-quality diets (bacteria and terrestrial particulate organic matter) was <28% of the assimilated carbon. Taken collectively, the incorporation of terrestrial carbon into <span class="hlt">zooplankton</span> was not directly related to the concentration of terrestrial organic matter in experiments or lakes, but rather to the low availability of phytoplankton.</p> </li> <li> <p><a target="_blank" onclick="trackOutboundLink('https://www.pubmedcentral.nih.gov/articlerender.fcgi?tool=pmcentrez&artid=4980614','PMC'); return false;" href="https://www.pubmedcentral.nih.gov/articlerender.fcgi?tool=pmcentrez&artid=4980614"><span>Terrestrial carbohydrates support freshwater <span class="hlt">zooplankton</span> during phytoplankton deficiency</span></a></p> <p><a target="_blank" href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?DB=pmc">PubMed Central</a></p> <p>Taipale, Sami J.; Galloway, Aaron W. E.; Aalto, Sanni L.; Kahilainen, Kimmo K.; Strandberg, Ursula; Kankaala, Paula</p> <p>2016-01-01</p> <p>Freshwater food webs can be partly supported by terrestrial primary production, often deriving from plant litter of surrounding catchment vegetation. Although consisting mainly of poorly bioavailable lignin, with low protein and lipid content, the carbohydrates from fallen tree leaves and shoreline vegetation may be utilized by aquatic consumers. Here we show that during phytoplankton deficiency, <span class="hlt">zooplankton</span> (Daphnia magna) can benefit from terrestrial particulate organic matter by using terrestrial-origin carbohydrates for energy and sparing essential fatty acids and amino acids for somatic growth and reproduction. Assimilated terrestrial-origin fatty acids from shoreline reed particles exceeded available diet, indicating that Daphnia may convert a part of their dietary carbohydrates to saturated fatty acids. This conversion was not observed with birch leaf diets, which had lower carbohydrate content. Subsequent analysis of 21 boreal and subarctic lakes showed that diet of herbivorous <span class="hlt">zooplankton</span> is mainly based on high-quality phytoplankton rich in essential polyunsaturated fatty acids. The proportion of low-quality diets (bacteria and terrestrial particulate organic matter) was <28% of the assimilated carbon. Taken collectively, the incorporation of terrestrial carbon into <span class="hlt">zooplankton</span> was not directly related to the concentration of terrestrial organic matter in experiments or lakes, but rather to the low availability of phytoplankton. PMID:27510848</p> </li> <li> <p><a target="_blank" onclick="trackOutboundLink('https://www.ncbi.nlm.nih.gov/pubmed/18470380','PUBMED'); return false;" href="https://www.ncbi.nlm.nih.gov/pubmed/18470380"><span>Water quality and <span class="hlt">zooplankton</span> in tanks with larvae of Brycon Orbignyanus (Valenciennes, 1949).</span></a></p> <p><a target="_blank" href="https://www.ncbi.nlm.nih.gov/entrez/query.fcgi?DB=pubmed">PubMed</a></p> <p>Sipaúba-Tavares, L H; Alvarez, E J da S; Braga, F M de S</p> <p>2008-02-01</p> <p>Due to the importance of water variables conditions and available food in the development and survival of fish larvae, the current research evaluates the effects of two different food treatments (ration + <span class="hlt">zooplankton</span> and only <span class="hlt">zooplankton</span>) and water quality in tanks with Brycon orbignyanus larvae. Total water transparency (45 cm) has been mainly associated with short residence time, continuous water flow and shallowness. Dissolved oxygen ranged between 1.32 and 7.00 mg.L(-1) in tanks with ration + <span class="hlt">zooplankton</span> and between 1.82 and 7.60 mg.L(-1) in tanks with only <span class="hlt">zooplankton</span> treatments. Nutrients were directly affected by the addition of ration in water, with the exception of nitrite. Ten Rotifera species were found represented by high densities, ranging between 8.7 x 10(5) and 1.3 x 10(6) org.m(-3), throughout the experimental period (January to March/1996). Cladocera had the lowest density in the four tanks under analysis and ranged between 4.7 x 10(4) and 2.1 x 10(5) org.m(-3) for the six species. Diaphanosoma birgei has been classified as the most frequent species. Since ration + <span class="hlt">zooplankton</span> produced better larvae yield, this treatment is recommended for Brycon orbignyanus larvae.</p> </li> <li> <p><a target="_blank" onclick="trackOutboundLink('https://www.ncbi.nlm.nih.gov/pubmed/12571002','PUBMED'); return false;" href="https://www.ncbi.nlm.nih.gov/pubmed/12571002"><span>Microbial <span class="hlt">community</span> <span class="hlt">composition</span> affects soil fungistasis.</span></a></p> <p><a target="_blank" href="https://www.ncbi.nlm.nih.gov/entrez/query.fcgi?DB=pubmed">PubMed</a></p> <p>de Boer, Wietse; Verheggen, Patrick; Klein Gunnewiek, Paulien J A; Kowalchuk, George A; van Veen, Johannes A</p> <p>2003-02-01</p> <p>Most soils inhibit fungal germination and growth to a certain extent, a phenomenon known as soil fungistasis. Previous observations have implicated microorganisms as the causal agents of fungistasis, with their action mediated either by available carbon limitation (nutrient deprivation hypothesis) or production of antifungal compounds (antibiosis hypothesis). To obtain evidence for either of these hypotheses, we measured soil respiration and microbial numbers (as indicators of nutrient stress) and bacterial <span class="hlt">community</span> <span class="hlt">composition</span> (as an indicator of potential differences in the <span class="hlt">composition</span> of antifungal components) during the development of fungistasis. This was done for two fungistatic dune soils in which fungistasis was initially fully or partly relieved by partial sterilization treatment or nutrient addition. Fungistasis development was measured as restriction of the ability of the fungi Chaetomium globosum, Fusarium culmorum, Fusarium oxysporum, and Trichoderma harzianum to colonize soils. Fungistasis did not always reappear after soil treatments despite intense competition for carbon, suggesting that microbial <span class="hlt">community</span> <span class="hlt">composition</span> is important in the development of fungistasis. Both microbial <span class="hlt">community</span> analysis and in vitro antagonism tests indicated that the presence of pseudomonads might be essential for the development of fungistasis. Overall, the results lend support to the antibiosis hypothesis.</p> </li> </ol> <div class="pull-right"> <ul class="pagination"> <li><a href="#" onclick='return showDiv("page_1");'>«</a></li> <li><a href="#" onclick='return showDiv("page_11");'>11</a></li> <li><a href="#" onclick='return showDiv("page_12");'>12</a></li> <li class="active"><span>13</span></li> <li><a href="#" onclick='return showDiv("page_14");'>14</a></li> <li><a href="#" onclick='return showDiv("page_15");'>15</a></li> <li><a href="#" onclick='return showDiv("page_25");'>»</a></li> </ul> </div> </div><!-- col-sm-12 --> </div><!-- row --> </div><!-- page_13 --> <div id="page_14" class="hiddenDiv"> <div class="row"> <div class="col-sm-12"> <div class="pull-right"> <ul class="pagination"> <li><a href="#" onclick='return showDiv("page_1");'>«</a></li> <li><a href="#" onclick='return showDiv("page_12");'>12</a></li> <li><a href="#" onclick='return showDiv("page_13");'>13</a></li> <li class="active"><span>14</span></li> <li><a href="#" onclick='return showDiv("page_15");'>15</a></li> <li><a href="#" onclick='return showDiv("page_16");'>16</a></li> <li><a href="#" onclick='return showDiv("page_25");'>»</a></li> </ul> </div> </div> </div> <div class="row"> <div class="col-sm-12"> <ol class="result-class" start="261"> <li> <p><a target="_blank" onclick="trackOutboundLink('https://www.pubmedcentral.nih.gov/articlerender.fcgi?tool=pmcentrez&artid=143609','PMC'); return false;" href="https://www.pubmedcentral.nih.gov/articlerender.fcgi?tool=pmcentrez&artid=143609"><span>Microbial <span class="hlt">Community</span> <span class="hlt">Composition</span> Affects Soil Fungistasis†</span></a></p> <p><a target="_blank" href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?DB=pmc">PubMed Central</a></p> <p>de Boer, Wietse; Verheggen, Patrick; Klein Gunnewiek, Paulien J. A.; Kowalchuk, George A.; van Veen, Johannes A.</p> <p>2003-01-01</p> <p>Most soils inhibit fungal germination and growth to a certain extent, a phenomenon known as soil fungistasis. Previous observations have implicated microorganisms as the causal agents of fungistasis, with their action mediated either by available carbon limitation (nutrient deprivation hypothesis) or production of antifungal compounds (antibiosis hypothesis). To obtain evidence for either of these hypotheses, we measured soil respiration and microbial numbers (as indicators of nutrient stress) and bacterial <span class="hlt">community</span> <span class="hlt">composition</span> (as an indicator of potential differences in the <span class="hlt">composition</span> of antifungal components) during the development of fungistasis. This was done for two fungistatic dune soils in which fungistasis was initially fully or partly relieved by partial sterilization treatment or nutrient addition. Fungistasis development was measured as restriction of the ability of the fungi Chaetomium globosum, Fusarium culmorum, Fusarium oxysporum, and Trichoderma harzianum to colonize soils. Fungistasis did not always reappear after soil treatments despite intense competition for carbon, suggesting that microbial <span class="hlt">community</span> <span class="hlt">composition</span> is important in the development of fungistasis. Both microbial <span class="hlt">community</span> analysis and in vitro antagonism tests indicated that the presence of pseudomonads might be essential for the development of fungistasis. Overall, the results lend support to the antibiosis hypothesis. PMID:12571002</p> </li> <li> <p><a target="_blank" onclick="trackOutboundLink('http://adsabs.harvard.edu/abs/2016AGUOSME24E0756S','NASAADS'); return false;" href="http://adsabs.harvard.edu/abs/2016AGUOSME24E0756S"><span>Hypoxia Impacts on Food Web Linkages in a Pelagic Ecosystem</span></a></p> <p><a target="_blank" href="http://adsabs.harvard.edu/abstract_service.html">NASA Astrophysics Data System (ADS)</a></p> <p>Sato, M.; Horne, J. K.; Parker-Stetter, S. L.; Essington, T.; Keister, J. E.; Moriarty, P.; Li, L.</p> <p>2016-02-01</p> <p>Low dissolved oxygen (DO), or hypoxia, causes significant disturbances on aquatic organisms, but the consequences for key food web linkages is not well understood. Here, we tested how the intensity of low DO events governs the degree of spatial overlap between pelagic zooplanktivorous fish and their <span class="hlt">zooplankton</span> prey, fish feeding rates, and <span class="hlt">community</span> <span class="hlt">compositions</span> of <span class="hlt">zooplankton</span>. We hypothesized that the greater sensitivity of fish to DO compared to <span class="hlt">zooplankton</span> would lead to diminished spatial overlap at moderate DO and reduced feeding rates of fish, while severe hypoxia would amplify spatial overlap by preventing <span class="hlt">zooplankton</span> from using deep refuge habitats leading to increased fish feeding rates. We also hypothesized shifts in <span class="hlt">zooplankton</span> <span class="hlt">community</span> <span class="hlt">composition</span> towards less energetically profitable taxa such as small copepods and gelatinous species. We used a combination of multifrequency acoustic and net sampling for detecting distributions and abundance of <span class="hlt">zooplankton</span> and pelagic fish in Hood Canal, WA, a seasonally hypoxic fjord. We employed a sampling design which paired hypoxic regions of Hood Canal with normoxic regions sampled prior to, during, and after the onset of hypoxia in two years. Contrary to our hypotheses, we found that fish and <span class="hlt">zooplankton</span> did not change their horizontal and vertical distributions during periods and in locations with low DO levels. Consequently, the vertical overlap between fish and <span class="hlt">zooplankton</span> did not change with DO. Fish feeding rates and the dominant <span class="hlt">zooplankton</span> prey did not change with hypoxia events. The apparent resilience of fish to low DO in our system may be explained by decreased metabolic oxygen demand due to cool temperatures, increased availability and accessibility to their prey in low DO waters, or potential increase in predation risk at shallower depth. This study highlights the importance of both temperature and DO, instead of hypoxia threshold alone, in evaluating the impacts of hypoxia on pelagic <span class="hlt">communities</span>.</p> </li> <li> <p><a target="_blank" onclick="trackOutboundLink('http://adsabs.harvard.edu/abs/2018ECSS..200..335C','NASAADS'); return false;" href="http://adsabs.harvard.edu/abs/2018ECSS..200..335C"><span>Estuarine and marine diets of out-migrating Chinook Salmon smolts in relation to local <span class="hlt">zooplankton</span> populations, including harmful blooms</span></a></p> <p><a target="_blank" href="http://adsabs.harvard.edu/abstract_service.html">NASA Astrophysics Data System (ADS)</a></p> <p>Chittenden, C. M.; Sweeting, R.; Neville, C. M.; Young, K.; Galbraith, M.; Carmack, E.; Vagle, S.; Dempsey, M.; Eert, J.; Beamish, R. J.</p> <p>2018-01-01</p> <p>Changes in food availability during the early marine phase of wild Chinook Salmon (O. tshawytscha) are being investigated as a cause of their recent declines in the Salish Sea. The marine survival of hatchery smolts, in particular, has been poor. This part of the Salish Sea Marine Survival Project examined the diet of young out-migrating Chinook Salmon for four consecutive years in the Cowichan River estuary and in Cowichan Bay, British Columbia, Canada. Local <span class="hlt">zooplankton</span> <span class="hlt">communities</span> were monitored during the final year of the study in the Cowichan River estuary, Cowichan Bay, and eastward to the Salish Sea to better understand the bottom-up processes that may be affecting Chinook Salmon survival. Rearing environment affected body size, diet, and distribution in the study area. Clipped smolts (hatchery-reared) were larger than the unclipped smolts (primarily naturally-reared), ate larger prey, spent very little time in the estuary, and disappeared from the bay earlier, likely due to emigration or mortality. Their larger body size may be a disadvantage for hatchery smolts if it necessitates their leaving the estuary prematurely to meet energy needs; the onset of piscivory began at a forklength of approximately 74 mm, which was less than the average forklength of the clipped fish in this study. The primary <span class="hlt">zooplankton</span> bloom occurred during the last week of April/first week of May 2013, whereas the main release of hatchery-reared Chinook Salmon smolts occurs each year in mid-May-this timing mismatch may reduce their survival. Gut fullness was correlated with <span class="hlt">zooplankton</span> biomass; however, both the clipped and unclipped smolts were not observed in the bay until the bloom of harmful Noctiluca was finished-20 days after the maximum recorded <span class="hlt">zooplankton</span> abundance. Jellyfish medusa flourished in nearshore areas, becoming less prevalent towards the deeper waters of the Salish Sea. The sizable presence of Noctiluca and jellyfish in the <span class="hlt">zooplankton</span> blooms may be repelling</p> </li> <li> <p><a target="_blank" onclick="trackOutboundLink('http://www.dtic.mil/docs/citations/ADA535255','DTIC-ST'); return false;" href="http://www.dtic.mil/docs/citations/ADA535255"><span>Protocol for Automated <span class="hlt">Zooplankton</span> Analysis</span></a></p> <p><a target="_blank" href="http://www.dtic.mil/">DTIC Science & Technology</a></p> <p></p> <p>2010-01-01</p> <p>on maximum dimension on the smallest axis: organisms > 50 microns (urn) (nominally <span class="hlt">zooplankton</span>), organisms > 10 um to < 50 um (nominally protists ...viability of protists . Recent work has focused on performing measurements at a variety of geographic locations to demonstrate that these stains...provide a location-independent means to identify viable protists in test samples. NRL recommends staining samples with a combination of two vital stains</p> </li> <li> <p><a target="_blank" onclick="trackOutboundLink('https://www.ncbi.nlm.nih.gov/pubmed/19852074','PUBMED'); return false;" href="https://www.ncbi.nlm.nih.gov/pubmed/19852074"><span>Trace metal dynamics in <span class="hlt">zooplankton</span> from the Bay of Bengal during summer monsoon.</span></a></p> <p><a target="_blank" href="https://www.ncbi.nlm.nih.gov/entrez/query.fcgi?DB=pubmed">PubMed</a></p> <p>Rejomon, G; Kumar, P K Dinesh; Nair, M; Muraleedharan, K R</p> <p>2010-12-01</p> <p>Trace metal (Fe, Co, Ni, Cu, Zn, Cd, and Pb) concentrations in <span class="hlt">zooplankton</span> from the mixed layer were investigated at 8 coastal and 20 offshore stations in the western Bay of Bengal during the summer monsoon of 2003. The ecotoxicological importance of trace metal uptake was apparent within the Bay of Bengal <span class="hlt">zooplankton</span>. There was a distinct spatial heterogeneity of metals, with highest concentrations in the upwelling zones of the southeast coast, moderate concentrations in the cyclonic eddy of the northeast coast, and lowest concentrations in the open ocean warm gyre regions. The average trace metal concentrations (μg g⁻¹) in coastal <span class="hlt">zooplankton</span> (Fe, 44894.1 ± 12198.2; Co, 46.2 ± 4.6; Ni, 62.8 ± 6.5; Cu, 84.9 ± 6.7; Zn, 7546.8 ± 1051.7; Cd, 46.2 ± 5.6; Pb, 19.2 ± 2.6) were higher than in offshore <span class="hlt">zooplankton</span> (Fe, 3423.4 ± 681.6; Co, 19.5 ± 3.81; Ni, 25.3 ± 7.3; Cu, 29.4 ± 4.2; Zn, 502.3 ± 124.3; Cd, 14.3 ± 2.9; Pb, 3.2 ± 2.0). A comparison of average trace metal concentrations in <span class="hlt">zooplankton</span> from the Bay of Bengal showed enrichment of Fe, Co, Ni, Cu, Zn, Cd, and Pb in coastal <span class="hlt">zooplankton</span> may be related to metal absorption from primary producers, and differences in metal concentrations in phytoplankton from coastal waters (upwelling zone and cyclonic eddy) compared with offshore waters (warm gyre). <span class="hlt">Zooplankton</span> showed a great capacity for accumulations of trace metals, with average concentration factors of 4 867 929 ± 569 971, 246 757 ± 51 321, 337 180 ± 125 725, 43 480 ± 11 212, 1 046 371 ± 110 286, 601 679 ± 213 949, and 15 420 ± 9201 for Fe, Co, Ni, Cu, Zn, Cd, and Pb with respect to dissolved concentrations in coastal and offshore waters of the Bay of Bengal. © 2009 Wiley Periodicals, Inc. Environ Toxicol, 2009. Copyright © 2009 Wiley Periodicals, Inc.</p> </li> <li> <p><a target="_blank" onclick="trackOutboundLink('https://www.ncbi.nlm.nih.gov/pubmed/24320954','PUBMED'); return false;" href="https://www.ncbi.nlm.nih.gov/pubmed/24320954"><span><span class="hlt">Composition</span> and development of oral bacterial <span class="hlt">communities</span>.</span></a></p> <p><a target="_blank" href="https://www.ncbi.nlm.nih.gov/entrez/query.fcgi?DB=pubmed">PubMed</a></p> <p>Palmer, Robert J</p> <p>2014-02-01</p> <p>The oral bacterial microbiome encompasses approximately 700 commonly occurring phylotypes, approximately half of which can be present at any time in any individual. These bacteria are largely indigenous to the oral cavity; this limited habitat range suggests that interactions between the various phylotypes, and between the phylotypes and their environment, are crucial for their existence. Molecular cataloging has confirmed many basic observations on the <span class="hlt">composition</span> of the oral microbiome that were formulated well before ribosomal RNA-based systematics, but the power and the scope of molecular taxonomy have resulted in the discovery of new phylotypes and, more importantly, have made possible a level of bacterial <span class="hlt">community</span> analysis that was unachievable with classical methods. Bacterial <span class="hlt">community</span> structure varies with location within the mouth, and changes in <span class="hlt">community</span> structure are related to disease initiation and disease progression. Factors that influence the formation and the evolution of <span class="hlt">communities</span> include selective adherence to epithelial or tooth surfaces, specific cell-to-cell binding as a driver of early <span class="hlt">community</span> <span class="hlt">composition</span>, and interorganismal interaction leading to alteration of the local environment, which represents the first step on the road to oral disease. A comprehensive understanding of how these factors interact to drive changes in the <span class="hlt">composition</span> of the oral microbial <span class="hlt">community</span> can lead to new strategies for the inhibition of periodontal diseases and dental caries. Published 2013. This article is a US Government work and is in the public domain in the USA.</p> </li> <li> <p><a target="_blank" onclick="trackOutboundLink('https://www.osti.gov/servlets/purl/10179429','SCIGOV-STC'); return false;" href="https://www.osti.gov/servlets/purl/10179429"><span><span class="hlt">Zooplankton</span> data: Vertical distributions of <span class="hlt">zooplankton</span> in the Norweigian and Greenland Seas during summer, 1989</span></a></p> <p><a target="_blank" href="http://www.osti.gov/search">DOE Office of Scientific and Technical Information (OSTI.GOV)</a></p> <p>Lane, P.V.Z.; Smith, S.L.; Schwarting, E.M.</p> <p>1993-08-01</p> <p>Recent studies of <span class="hlt">zooplankton</span> populations in the Greenland Sea have focused on processes at the Marginal Ice Zone (MIZ) and the areas immediately adjacent to it under the ice and in open water. These studies have shown a relatively short period of intense secondary productivity which is closely linked temporally and spatially to phytoplankton blooms occurring near the ice edge in spring and early summer. During the summer of 1989 we participated in a project focusing on benthic and water column processes in the basins of the Norwegian and Greenland Seas. This study allowed us to compare biological processes atmore » the MIZ with those occurring in the open waters of the Greenland Sea, and to compare processes at both of these locations with those in the Norwegian Sea. The data presented in this report are the results of <span class="hlt">zooplankton</span> net tows covering the upper 1000 meters of the water column over the Norwegian Sea basin and the Greenland Sea basin, and the upper 500 meters of open water adjacent to the MIZ in the Greenland Sea. Sampling was conducted between 12 and 29 July 1989.« less</p> </li> <li> <p><a target="_blank" onclick="trackOutboundLink('https://www.ncbi.nlm.nih.gov/pubmed/29126632','PUBMED'); return false;" href="https://www.ncbi.nlm.nih.gov/pubmed/29126632"><span>An estimate of the percentage of non-predatory dead variability in coastal <span class="hlt">zooplankton</span> of the southern Humboldt Current System.</span></a></p> <p><a target="_blank" href="https://www.ncbi.nlm.nih.gov/entrez/query.fcgi?DB=pubmed">PubMed</a></p> <p>Krautz, M C; Hernández-Miranda, E; Veas, R; Bocaz, P; Riquelme, P; Quiñones, R A</p> <p>2017-12-01</p> <p>Non-predatory dead variability in <span class="hlt">zooplankton</span> remains poorly quantified worldwide. Here, we make the first estimation of the percentage of dead organisms in coastal <span class="hlt">zooplankton</span> <span class="hlt">communities</span> in the Humboldt Current System (HCS) under in situ conditions. The study was conducted in four coastal sites of the southern HCS (between 36 and 37°S) over a period of one year. Percentages of dead organisms were based on the classification as live or dead of 158,220 holoplankton and 17,591 meroplankton individuals using neutral red staining technique. The percentage of dead organisms in total-<span class="hlt">zooplankton</span> was between 4.3% in Coronel Bay (summer) and 76.9% in Llico (autumn). The percentage of dead total-holoplankton varied from 4.2% (Itata River Mouth; autumn) to 77.6% (Llico; autumn), while the percentage of dead total-meroplankton ranged from 1.5% to 56.8% in Coronel Bay and Coliumo Bay, respectively. The most abundant taxa analyzed were the copepods Acartia sp., Paracalanus sp., Calanoides sp., Cladocera, Polychaeta, and the eggs of anchoveta Engraulis ringens. Among these taxa, there was a high degree of interspecific variability in the estimation of the dead organisms. The Pearson correlation shows significant relationships between maximum temperature, and minimum salinity, with the percentage of dead individuals of Acartia sp. and Paracalanus sp. Environmental factors explaining those relationships were: the El Niño 2015-2016 event, and freshwater river runoff. The use of vital staining to estimate non-predatory death for total-<span class="hlt">zooplankton</span> and selected sentinel species is a promising tool to establish baselines to evaluate natural perturbations (e.g. ENSO), and anthropogenic alterations in coastal pelagic ecosystems. Copyright © 2017 Elsevier Ltd. All rights reserved.</p> </li> <li> <p><a target="_blank" onclick="trackOutboundLink('http://www.dtic.mil/docs/citations/ADA482028','DTIC-ST'); return false;" href="http://www.dtic.mil/docs/citations/ADA482028"><span>Dynamics of Marine <span class="hlt">Zooplankton</span>: Social Behavior, Ecological Interactions, and Physically-Induced Variability</span></a></p> <p><a target="_blank" href="http://www.dtic.mil/">DTIC Science & Technology</a></p> <p></p> <p>2008-02-01</p> <p>97 3.3.2 Steady-state solutions ..... ........................ 100 3.4 Ecosystem dynamics ...... ............................. 102 3.4.1 Fast ...<span class="hlt">zooplankton</span> motion is decoupled from biological ac- tivities, as calculated in Flier] et al. (1999). When the diffusion rate is fast compared to phytoplankton...homogenize the <span class="hlt">zooplankton</span> distribution, which remains spatially more intermit - tent than a passive scalar field. The last panel shows the index for</p> </li> <li> <p><a target="_blank" onclick="trackOutboundLink('https://www.ncbi.nlm.nih.gov/pubmed/28812152','PUBMED'); return false;" href="https://www.ncbi.nlm.nih.gov/pubmed/28812152"><span>Native arbuscular mycorrhizal symbiosis alters foliar bacterial <span class="hlt">community</span> <span class="hlt">composition</span>.</span></a></p> <p><a target="_blank" href="https://www.ncbi.nlm.nih.gov/entrez/query.fcgi?DB=pubmed">PubMed</a></p> <p>Poosakkannu, Anbu; Nissinen, Riitta; Kytöviita, Minna-Maarit</p> <p>2017-11-01</p> <p>The effects of arbuscular mycorrhizal (AM) fungi on plant-associated microbes are poorly known. We tested the hypothesis that colonization by an AM fungus affects microbial species richness and microbial <span class="hlt">community</span> <span class="hlt">composition</span> of host plant tissues. We grew the grass, Deschampsia flexuosa in a greenhouse with or without the native AM fungus, Claroideoglomus etunicatum. We divided clonally produced tillers into two parts: one inoculated with AM fungus spores and one without AM fungus inoculation (non-mycorrhizal, NM). We characterized bacterial (16S rRNA gene) and fungal <span class="hlt">communities</span> (internal transcribed spacer region) in surface-sterilized leaf and root plant compartments. AM fungus inoculation did not affect microbial species richness or diversity indices in leaves or roots, but the AM fungus inoculation significantly affected bacterial <span class="hlt">community</span> <span class="hlt">composition</span> in leaves. A total of three OTUs in leaves belonging to the phylum Firmicutes positively responded to the presence of the AM fungus in roots. Another six OTUs belonging to the Proteobacteria (Alpha, Beta, and Gamma) and Bacteroidetes were significantly more abundant in NM plants when compared to AM fungus-inoculated plants. Further, there was a significant correlation between plant dry weight and leaf microbial <span class="hlt">community</span> <span class="hlt">compositional</span> shift. Also, there was a significant correlation between leaf bacterial <span class="hlt">community</span> <span class="hlt">compositional</span> shift and foliar nitrogen content changes due to AM fungus inoculation. The results suggest that AM fungus colonization in roots has a profound effect on plant physiology that is reflected in leaf bacterial <span class="hlt">community</span> <span class="hlt">composition</span>.</p> </li> <li> <p><a target="_blank" onclick="trackOutboundLink('https://www.ncbi.nlm.nih.gov/pubmed/23506226','PUBMED'); return false;" href="https://www.ncbi.nlm.nih.gov/pubmed/23506226"><span>Increasing <span class="hlt">zooplankton</span> size diversity enhances the strength of top-down control on phytoplankton through diet niche partitioning.</span></a></p> <p><a target="_blank" href="https://www.ncbi.nlm.nih.gov/entrez/query.fcgi?DB=pubmed">PubMed</a></p> <p>Ye, Lin; Chang, Chun-Yi; García-Comas, Carmen; Gong, Gwo-Ching; Hsieh, Chih-Hao</p> <p>2013-09-01</p> <p>1. The biodiversity-ecosystem functioning debate is a central topic in ecology. Recently, there has been a growing interest in size diversity because body size is sensitive to environmental changes and is one of the fundamental characteristics of organisms linking many ecosystem properties. However, how size diversity affects ecosystem functioning is an important yet unclear issue. 2. To fill the gap, with large-scale field data from the East China Sea, we tested the novel hypothesis that increasing <span class="hlt">zooplankton</span> size diversity enhances top-down control on phytoplankton (H1) and compared it with five conventional hypotheses explaining the top-down control: flatter <span class="hlt">zooplankton</span> size spectrum enhances the strength of top-down control (H2); nutrient enrichment lessens the strength of top-down control (H3); increasing <span class="hlt">zooplankton</span> taxonomic diversity enhances the strength of top-down control (H4); increasing fish predation decreases the strength of top-down control of <span class="hlt">zooplankton</span> on phytoplankton through trophic cascade (H5); increasing temperature intensifies the strength of top-down control (H6). 3. The results of univariate analyses support the hypotheses based on <span class="hlt">zooplankton</span> size diversity (H1), <span class="hlt">zooplankton</span> size spectrum (H2), nutrient (H3) and <span class="hlt">zooplankton</span> taxonomic diversity (H4), but not the hypotheses based on fish predation (H5) and temperature (H6). More in-depth analyses indicate that <span class="hlt">zooplankton</span> size diversity is the most important factor in determining the strength of top-down control on phytoplankton in the East China Sea. 4. Our results suggest a new potential mechanism that increasing predator size diversity enhances the strength of top-down control on prey through diet niche partitioning. This mechanism can be explained by the optimal predator-prey body-mass ratio concept. Suppose each size group of <span class="hlt">zooplankton</span> predators has its own optimal phytoplankton prey size, increasing size diversity of <span class="hlt">zooplankton</span> would promote diet niche partitioning of predators</p> </li> <li> <p><a target="_blank" onclick="trackOutboundLink('http://adsabs.harvard.edu/abs/1998DSRII..45.1155B','NASAADS'); return false;" href="http://adsabs.harvard.edu/abs/1998DSRII..45.1155B"><span>Acoustic discrimination of Southern Ocean <span class="hlt">zooplankton</span></span></a></p> <p><a target="_blank" href="http://adsabs.harvard.edu/abstract_service.html">NASA Astrophysics Data System (ADS)</a></p> <p>Brierley, Andrew S.; Ward, Peter; Watkins, Jonathan L.; Goss, Catherine</p> <p></p> <p>Acoustic surveys in the vicinity of the sub-Antarctic island of South Georgia during a period of exceptionally calm weather revealed the existence of a number of horizontally extensive yet vertically discrete scattering layers in the upper 250 m of the water column. These layers were fished with a Longhurst-Hardy plankton recorder (LHPR) and a multiple-opening 8 m 2 rectangular mid-water trawl (RMT8). Analysis of catches suggested that each scattering layer was composed predominantly of a single species (biovolume>95%) of either the euphausiids Euphausia frigida or Thysanöessa macrura, the hyperiid amphipod Themisto gaudichaudii, or the eucalaniid copepod Rhincalanus gigas. Instrumentation on the nets allowed their trajectories to be reconstructed precisely, and thus catch data to be related directly to the corresponding acoustic signals. Discriminant function analysis of differences between mean volume backscattering strength at 38, 120 and 200 kHz separated echoes originating from each of the dominant scattering layers, and other signals identified as originating from Antarctic krill ( Euphausia superba), with an overall correct classification rate of 77%. Using echo intensity data alone, gathered using hardware commonly employed for fishery acoustics, it is therefore possible to discriminate in situ between several <span class="hlt">zooplanktonic</span> taxa, taxa which in some instances exhibit similar gross morphological characteristics and have overlapping length- frequency distributions. Acoustic signals from the mysid Antarctomysis maxima could also be discriminated once information on target distribution was considered, highlighting the value of incorporating multiple descriptors of echo characteristics into signal identification procedures. The ability to discriminate acoustically between <span class="hlt">zooplankton</span> taxa could be applied to provide improved acoustic estimates of species abundance, and to enhance field studies of <span class="hlt">zooplankton</span> ecology, distribution and species interactions.</p> </li> <li> <p><a target="_blank" onclick="trackOutboundLink('http://adsabs.harvard.edu/abs/2013PhDT.......297B','NASAADS'); return false;" href="http://adsabs.harvard.edu/abs/2013PhDT.......297B"><span>Material properties of <span class="hlt">zooplankton</span> and nekton from the California current</span></a></p> <p><a target="_blank" href="http://adsabs.harvard.edu/abstract_service.html">NASA Astrophysics Data System (ADS)</a></p> <p>Becker, Kaylyn</p> <p></p> <p>This study measured the material properties of <span class="hlt">zooplankton</span>, Pacific hake (Merluccius productus), Humboldt squid (Dosidicus gigas), and two species of myctophids (Symbolophorus californiensis and Diaphus theta) collected from the California Current ecosystem. The density contrast (g) was measured for euphausiids, decapods (Sergestes similis), amphipods (Primno macropa, Phronima sp., and Hyperiid spp.), siphonophore bracts, chaetognaths, larval fish, crab megalopae, larval squid, and medusae. Morphometric data (length, width, and height) were collected for these taxa. Density contrasts varied within and between <span class="hlt">zooplankton</span> taxa. The mean and standard deviation for euphausiid density contrast were 1.059 +/- 0.009. Relationships between <span class="hlt">zooplankton</span> density contrast and morphometric measurements, geographic location, and environmental conditions were investigated. Site had a significant effect on euphausiid density contrast. Density contrasts of euphausiids collected in the same geographic area approximately 4-10 days apart were significantly higher (p < 0.001). Sound speed contrast (h) was measured for euphausiids and pelagic decapods (S. similis) and it varied between taxa. The mean and standard deviation for euphausiid sound speed were 1.019 +/- 0.009. Euphausiid mass was calculated from density measurements and volume, and a relationship between euphausiid mass and length was produced. We determined that euphausiid from volumes could be accurately estimated two dimensional measurements of animal body shape, and that biomass (or biovolume) could be accurately calculated from digital photographs of animals. Density contrast (g) was measured for <span class="hlt">zooplankton</span>, pieces of hake flesh, myctophid flesh, and of the following Humboldt squid body parts: mantle, arms, tentacle, braincase, eyes, pen, and beak. The density contrasts varied within and between fish taxa, as well as among squid body parts. Effects of animal length and environmental conditions on nekton density</p> </li> <li> <p><a target="_blank" onclick="trackOutboundLink('https://www.pubmedcentral.nih.gov/articlerender.fcgi?tool=pmcentrez&artid=5667886','PMC'); return false;" href="https://www.pubmedcentral.nih.gov/articlerender.fcgi?tool=pmcentrez&artid=5667886"><span>Predicting temporal variation in <span class="hlt">zooplankton</span> beta diversity is challenging</span></a></p> <p><a target="_blank" href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?DB=pmc">PubMed Central</a></p> <p>Castelo Branco, Christina W.; Kozlowsky-Suzuki, Betina; Sousa-Filho, Izidro F.; Souza, Leonardo Coimbra e; Bini, Luis Mauricio</p> <p>2017-01-01</p> <p>Beta diversity, the spatial variation in species <span class="hlt">composition</span>, has been related to different explanatory variables, including environmental heterogeneity, productivity and connectivity. Using a long-term time series of <span class="hlt">zooplankton</span> data collected over 62 months in a tropical reservoir (Ribeirão das Lajes Reservoir, Rio de Janeiro State, Brazil), we tested whether beta diversity (as measured across six sites distributed along the main axis of the reservoir) was correlated with environmental heterogeneity (spatial environmental variation in a given month), chlorophyll-a concentration (a surrogate for productivity) and water level. We did not found evidence for the role of these predictors, suggesting the need to reevaluate predictions or at least to search for better surrogates of the processes that hypothetically control beta diversity variation. However, beta diversity declined over time, which is consistent with the process of biotic homogenization, a worldwide cause of concern. PMID:29095892</p> </li> <li> <p><a target="_blank" onclick="trackOutboundLink('http://adsabs.harvard.edu/abs/2009CorRe..28..895A','NASAADS'); return false;" href="http://adsabs.harvard.edu/abs/2009CorRe..28..895A"><span>Near-surface enrichment of <span class="hlt">zooplankton</span> over a shallow back reef: implications for coral reef food webs</span></a></p> <p><a target="_blank" href="http://adsabs.harvard.edu/abstract_service.html">NASA Astrophysics Data System (ADS)</a></p> <p>Alldredge, A. L.; King, J. M.</p> <p>2009-12-01</p> <p><span class="hlt">Zooplankton</span> were 3-8 times more abundant during the day near the surface than elsewhere in the water column over a 1-2.4 m deep back reef in Moorea, French Polynesia. <span class="hlt">Zooplankton</span> were also significantly more abundant near the surface at night although gradients were most pronounced under moonlight. <span class="hlt">Zooplankton</span> in a unidirectional current became concentrated near the surface within 2 m of departing a well-mixed trough immediately behind the reef crest, indicating that upward swimming behavior, rather than near-bottom depletion by reef planktivores, was the proximal cause of these gradients. <span class="hlt">Zooplankton</span> were highly enriched near the surface before and after a full lunar eclipse but distributed evenly throughout the water column during the eclipse itself supporting light as a proximal cue for the upward swimming behavior of many taxa. This is the first investigation of the vertical distribution of <span class="hlt">zooplankton</span> over a shallow back reef typical of island barrier reef systems common around the world. Previous studies on deeper fringing reefs found <span class="hlt">zooplankton</span> depletion near the bottom but no enrichment aloft. In Moorea, where seawater is continuously recirculated out the lagoon and back across the reef crest onto the back reef, selection for upward swimming behavior may be especially strong, because the surface serves both as a refuge from predation and an optimum location for retention within the reef system. Planktivorous fish and corals that can forage or grow even marginally higher in the water column might have a substantial competitive advantage over those nearer the bottom on shallow reefs. <span class="hlt">Zooplankton</span> abundance varied more over a few tens of centimeters vertical distance than it did between seasons or even between day and night indicating that great care must be taken to accurately assess the availability of <span class="hlt">zooplankton</span> as food on shallow reefs.</p> </li> <li> <p><a target="_blank" onclick="trackOutboundLink('https://www.pubmedcentral.nih.gov/articlerender.fcgi?tool=pmcentrez&artid=3986181','PMC'); return false;" href="https://www.pubmedcentral.nih.gov/articlerender.fcgi?tool=pmcentrez&artid=3986181"><span>Soil biodiversity and soil <span class="hlt">community</span> <span class="hlt">composition</span> determine ecosystem multifunctionality</span></a></p> <p><a target="_blank" href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?DB=pmc">PubMed Central</a></p> <p>Wagg, Cameron; Bender, S. Franz; Widmer, Franco; van der Heijden, Marcel G. A.</p> <p>2014-01-01</p> <p>Biodiversity loss has become a global concern as evidence accumulates that it will negatively affect ecosystem services on which society depends. So far, most studies have focused on the ecological consequences of above-ground biodiversity loss; yet a large part of Earth’s biodiversity is literally hidden below ground. Whether reductions of biodiversity in soil <span class="hlt">communities</span> below ground have consequences for the overall performance of an ecosystem remains unresolved. It is important to investigate this in view of recent observations that soil biodiversity is declining and that soil <span class="hlt">communities</span> are changing upon land use intensification. We established soil <span class="hlt">communities</span> differing in <span class="hlt">composition</span> and diversity and tested their impact on eight ecosystem functions in model grassland <span class="hlt">communities</span>. We show that soil biodiversity loss and simplification of soil <span class="hlt">community</span> <span class="hlt">composition</span> impair multiple ecosystem functions, including plant diversity, decomposition, nutrient retention, and nutrient cycling. The average response of all measured ecosystem functions (ecosystem multifunctionality) exhibited a strong positive linear relationship to indicators of soil biodiversity, suggesting that soil <span class="hlt">community</span> <span class="hlt">composition</span> is a key factor in regulating ecosystem functioning. Our results indicate that changes in soil <span class="hlt">communities</span> and the loss of soil biodiversity threaten ecosystem multifunctionality and sustainability. PMID:24639507</p> </li> <li> <p><a target="_blank" onclick="trackOutboundLink('https://www.pubmedcentral.nih.gov/articlerender.fcgi?tool=pmcentrez&artid=5838004','PMC'); return false;" href="https://www.pubmedcentral.nih.gov/articlerender.fcgi?tool=pmcentrez&artid=5838004"><span><span class="hlt">Zooplankton</span> From a Reef System Under the Influence of the Amazon River Plume</span></a></p> <p><a target="_blank" href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?DB=pmc">PubMed Central</a></p> <p>Neumann-Leitão, Sigrid; Melo, Pedro A. M. C.; Schwamborn, Ralf; Diaz, Xiomara F. G.; Figueiredo, Lucas G. P.; Silva, Andrea P.; Campelo, Renata P. S.; de Melo Júnior, Mauro; Melo, Nuno F. A. C.; Costa, Alejandro E. S. F.; Araújo, Moacyr; Veleda, Dóris R. A.; Moura, Rodrigo L.; Thompson, Fabiano</p> <p>2018-01-01</p> <p>At the mouth of the Amazon River, a widespread carbonate ecosystem exists below the river plume, generating a hard-bottom reef (∼9500 km2) that includes mainly large sponges but also rhodolith beds. The mesozooplankton associated with the pelagic realm over the reef formation was characterized, considering the estuarine plume and oceanic influence. Vertical hauls were carried out using a standard plankton net with 200 μm mesh size during September 2014. An indicator index was applied to express species importance as ecological indicators in <span class="hlt">community</span>. Information on functional traits was gathered for the most abundant copepod species. Overall, 179 <span class="hlt">zooplankton</span> taxa were recorded. Copepods were the richest (92 species), most diverse and most abundant group, whereas meroplankton were rare and less abundant. Species diversity (>3.0 bits.ind-1) and evenness (>0.6) were high, indicating a complex <span class="hlt">community</span>. Small holoplanktonic species dominated the <span class="hlt">zooplankton</span>, and the total density varied from 107.98 ind. m-3 over the reef area to 2,609.24 ind. m-3 in the estuarine plume, with a significant difference between coastal and oceanic areas. The most abundant copepods were the coastal species ithona plumifera and Clausocalanus furcatus and early stages copepodites of Paracalanidae. The holoplanktonic Oikopleura, an important producer of mucous houses, was very abundant on the reefs. The indicator species index revealed three groups: (1) indicative of coastal waters under the influence of the estuarine plume [Euterpina acutifrons, Parvocalanus crassirostris, Oikopleura (Vexillaria) dioica and Hydromedusae]; (2) characterized coastal and oceanic conditions (Clausocalanus); (3) characterized the reef system (O. plumifera). Two major copepods functional groups were identified and sorted according to their trophic strategy and coastal-oceanic distribution. The species that dominated the coastal area and the area over the rhodolith beds are indicators of the estuarine plume and</p> </li> <li> <p><a target="_blank" onclick="trackOutboundLink('https://www.ncbi.nlm.nih.gov/pubmed/29545783','PUBMED'); return false;" href="https://www.ncbi.nlm.nih.gov/pubmed/29545783"><span><span class="hlt">Zooplankton</span> From a Reef System Under the Influence of the Amazon River Plume.</span></a></p> <p><a target="_blank" href="https://www.ncbi.nlm.nih.gov/entrez/query.fcgi?DB=pubmed">PubMed</a></p> <p>Neumann-Leitão, Sigrid; Melo, Pedro A M C; Schwamborn, Ralf; Diaz, Xiomara F G; Figueiredo, Lucas G P; Silva, Andrea P; Campelo, Renata P S; de Melo Júnior, Mauro; Melo, Nuno F A C; Costa, Alejandro E S F; Araújo, Moacyr; Veleda, Dóris R A; Moura, Rodrigo L; Thompson, Fabiano</p> <p>2018-01-01</p> <p>At the mouth of the Amazon River, a widespread carbonate ecosystem exists below the river plume, generating a hard-bottom reef (∼9500 km 2 ) that includes mainly large sponges but also rhodolith beds. The mesozooplankton associated with the pelagic realm over the reef formation was characterized, considering the estuarine plume and oceanic influence. Vertical hauls were carried out using a standard plankton net with 200 μm mesh size during September 2014. An indicator index was applied to express species importance as ecological indicators in <span class="hlt">community</span>. Information on functional traits was gathered for the most abundant copepod species. Overall, 179 <span class="hlt">zooplankton</span> taxa were recorded. Copepods were the richest (92 species), most diverse and most abundant group, whereas meroplankton were rare and less abundant. Species diversity (>3.0 bits.ind -1 ) and evenness (>0.6) were high, indicating a complex <span class="hlt">community</span>. Small holoplanktonic species dominated the <span class="hlt">zooplankton</span>, and the total density varied from 107.98 ind. m -3 over the reef area to 2,609.24 ind. m -3 in the estuarine plume, with a significant difference between coastal and oceanic areas. The most abundant copepods were the coastal species ithona plumifera and Clausocalanus furcatus and early stages copepodites of Paracalanidae. The holoplanktonic Oikopleura , an important producer of mucous houses, was very abundant on the reefs. The indicator species index revealed three groups: (1) indicative of coastal waters under the influence of the estuarine plume [ Euterpina acutifrons, Parvocalanus crassirostris, Oikopleura (Vexillaria) dioica and Hydromedusae]; (2) characterized coastal and oceanic conditions ( Clausocalanus ); (3) characterized the reef system ( O. plumifera ). Two major copepods functional groups were identified and sorted according to their trophic strategy and coastal-oceanic distribution. The species that dominated the coastal area and the area over the rhodolith beds are indicators of the</p> </li> <li> <p><a target="_blank" onclick="trackOutboundLink('http://adsabs.harvard.edu/abs/2004ASAJ..115.2557T','NASAADS'); return false;" href="http://adsabs.harvard.edu/abs/2004ASAJ..115.2557T"><span>Multifrequency acoustic observations of <span class="hlt">zooplankton</span> in Knight Inlet, B.C</span></a></p> <p><a target="_blank" href="http://adsabs.harvard.edu/abstract_service.html">NASA Astrophysics Data System (ADS)</a></p> <p>Trevorrow, Mark V.; Mackas, David L.; Benfield, Mark C.</p> <p>2004-05-01</p> <p>A collaborative investigation of midwater <span class="hlt">zooplankton</span> aggregations in a coastal fjord was conducted in November 2002. Midwater aggregations of <span class="hlt">zooplankton</span> in a coastal fjord were sampled and mapped using a calibrated, three-frequency (38, 120, and 200 kHz) vessel-based echo-sounder system, a multinet towed <span class="hlt">zooplankton</span> net (BIONESS), and a high-resolution in situ camera system (ZOOVIS). Dense daytime layers of euphausiids and amphipods near 70- to 90-m depth were found in the lower reaches of the inlet, especially concentrated by tidal flows around a sill which rises above the layer. Quantitative euphausiid and amphipod backscattering measurements, combined with in situ species, size, and abundance estimates, were found to agree closely with recent size- and orientation-averaged fluid-cylinder scattering models produced by Stanton et al. Also, in situ scattering measurements of physonect siphonophores were found to have a much stronger low-frequency (38 kHz) scattering strength, in agreement with a simple bubble scattering model. [Work supported by Dr. J. Eckman, ONR code 322BC.</p> </li> <li> <p><a target="_blank" onclick="trackOutboundLink('http://adsabs.harvard.edu/abs/2017EGUGA..1910114P','NASAADS'); return false;" href="http://adsabs.harvard.edu/abs/2017EGUGA..1910114P"><span>Effects of physical forcing on COastal <span class="hlt">ZOoplankton</span> <span class="hlt">community</span> structure: study of the unusual case of a MEDiterranean ecosystem under strong tidal influence (Project COZOMED-MERMEX)</span></a></p> <p><a target="_blank" href="http://adsabs.harvard.edu/abstract_service.html">NASA Astrophysics Data System (ADS)</a></p> <p>Pagano, Marc</p> <p>2017-04-01</p> <p>Groupe COZOMED: R. Arfi (1), A. Atoui (2), H. Ayadi (6), B. Bejaoui (1), N. Bhairy (1), N. Barraj (2), M. Belhassen (2), S. Benismail (2), M.Y Benkacem (2), J. Blanchot (1), M. Cankovic(5), F. Carlotti (1), C. Chevalier (1), I Ciglenecki-Jusic (5), D. Couet (1), N. Daly Yahia (3), L. Dammak (2), J.-L. Devenon (1), Z. Drira (6), A. Hamza (2), S. Kmia (6), N. Makhlouf (3), M. Mahfoudi (2), M. Moncef (4), M. Pagano (1), C. Sammari (2), H. Smeti (2), A. Zouari (2) The COZOMED-MERMEX project aims at understanding how hydrodynamic forcing (currents, tides, winds) combine with anthropogenic forcing and climate to affect the variability of coastal Mediterranean <span class="hlt">zooplankton</span> <span class="hlt">communities</span> under contrasting tidal influence. This study includes (i) a zero state of knowledge via a literature review of existing data and (ii) a case study on the system Boughrara lagoon - Gulf of Gabes. This ecosystem gives major services for Tunisia (about 65% of national fish production) but is weakened by its situation in a heavily anthropized area and under influence of urban, industrial and agricultural inputs. Besides this region is subject to specific climate forcing (Sahelian winds, scorching heat, intense evaporation, flooding) which possible changes will be considered. The expected issues are (i) to improve our knowledge of hydrodynamic forcing on <span class="hlt">zooplankton</span> and ultimately on the functioning of coastal Mediterranean ecosystems impacted by anthropogenic and climatic effects and (ii) to elaborate management tools to help preserving good ecological status of these ecosystems: hydrodynamic circulation model, mapping of isochrones of residence times, mapping of the areas of highest <span class="hlt">zooplankton</span> abundances (swarms), and sensitive areas, etc. This project strengthens existing scientific collaborations within the MERMEX program (The MerMex Group, 2011) and in the frame of an international joint laboratory (COSYS-Med) created in 2014. A first field mulidisciplinary campaign was performed in October</p> </li> </ol> <div class="pull-right"> <ul class="pagination"> <li><a href="#" onclick='return showDiv("page_1");'>«</a></li> <li><a href="#" onclick='return showDiv("page_12");'>12</a></li> <li><a href="#" onclick='return showDiv("page_13");'>13</a></li> <li class="active"><span>14</span></li> <li><a href="#" onclick='return showDiv("page_15");'>15</a></li> <li><a href="#" onclick='return showDiv("page_16");'>16</a></li> <li><a href="#" onclick='return showDiv("page_25");'>»</a></li> </ul> </div> </div><!-- col-sm-12 --> </div><!-- row --> </div><!-- page_14 --> <div id="page_15" class="hiddenDiv"> <div class="row"> <div class="col-sm-12"> <div class="pull-right"> <ul class="pagination"> <li><a href="#" onclick='return showDiv("page_1");'>«</a></li> <li><a href="#" onclick='return showDiv("page_13");'>13</a></li> <li><a href="#" onclick='return showDiv("page_14");'>14</a></li> <li class="active"><span>15</span></li> <li><a href="#" onclick='return showDiv("page_16");'>16</a></li> <li><a href="#" onclick='return showDiv("page_17");'>17</a></li> <li><a href="#" onclick='return showDiv("page_25");'>»</a></li> </ul> </div> </div> </div> <div class="row"> <div class="col-sm-12"> <ol class="result-class" start="281"> <li> <p><a target="_blank" onclick="trackOutboundLink('https://www.ncbi.nlm.nih.gov/pubmed/28313006','PUBMED'); return false;" href="https://www.ncbi.nlm.nih.gov/pubmed/28313006"><span>The effects on the plankton <span class="hlt">community</span> of filter-feeding Sacramento blackfish, Orthodon microlepidotus.</span></a></p> <p><a target="_blank" href="https://www.ncbi.nlm.nih.gov/entrez/query.fcgi?DB=pubmed">PubMed</a></p> <p>Byers, Stephanie; Vinyard, Gary L</p> <p>1990-06-01</p> <p>A series of mesocosm experiments was performed to assess the effects on the plankton <span class="hlt">community</span> of filter-feeding Sacramento blackfish (Cyprinidae; Orthodon microlepidotus). Phytoplankton size-frequency distribution, <span class="hlt">zooplankton</span> abundance, primary production, potential secondary production, and nutrient concentrations were measured. Blackfish reduce numbers of both evasive and nonevasive <span class="hlt">zooplankton</span> and large phytoplankton while enhancing nanoplankton densities. Blackfish also significantly increase primary production and potential secondary <span class="hlt">community</span> production. Levels of dissolved inorganic phosphorus and ammonia-nitrogen also increase. The effects of blackfish are generally similar to those reported for other filter-feeding fish.</p> </li> <li> <p><a target="_blank" onclick="trackOutboundLink('http://www.dtic.mil/docs/citations/ADA626242','DTIC-ST'); return false;" href="http://www.dtic.mil/docs/citations/ADA626242"><span>Acoustic Scattering Classification of <span class="hlt">Zooplankton</span> and Microstructure</span></a></p> <p><a target="_blank" href="http://www.dtic.mil/">DTIC Science & Technology</a></p> <p></p> <p>2001-09-30</p> <p>As part of this investigation, we have been observing concentrations of siphonulae, a larval form of the gas-bearing <span class="hlt">zooplankton</span> siphonophore . The...situ measurements of acoustic target strengths of siphonophores , a gas-bearing zooplankter,” ICES J. Mar. Sci. 58: 740-749. Warren, J.D., T.K</p> </li> <li> <p><a target="_blank" onclick="trackOutboundLink('http://adsabs.harvard.edu/abs/2000ECSS...50..129G','NASAADS'); return false;" href="http://adsabs.harvard.edu/abs/2000ECSS...50..129G"><span><span class="hlt">Zooplankton</span> Distribution in Four Western Norwegian Fjords</span></a></p> <p><a target="_blank" href="http://adsabs.harvard.edu/abstract_service.html">NASA Astrophysics Data System (ADS)</a></p> <p>Gorsky, G.; Flood, P. R.; Youngbluth, M.; Picheral, M.; Grisoni, J.-M.</p> <p>2000-01-01</p> <p>A multi-instrumental array constructed in the Laboratoire d'Ecologie du Plancton Marin in Villefranche sur mer, France, named the Underwater Video Profiler (UVP), was used to investigate the vertical distribution of <span class="hlt">zooplankton</span> in four western Norwegian fjords in the summer 1996. Six distinct zoological groups were monitored. The fauna included: (a) small crustaceans (mainly copepods), (b) ctenophores (mainly lobates), (c) siphonophores (mainly physonects), (d) a scyphomedusa Periphylla periphylla, (e) chaetognaths and (f) appendicularians. The use of the non-disturbing video technique demonstrated that the distribution of large <span class="hlt">zooplankton</span> is heterogeneous vertically and geographically. Furthermore, the abundance of non-migrating filter feeders in the deep basins of the fjords indicates that there is enough food (living and non-living particulate organic matter) to support their dietary needs. This adaptation may be considered as a strategy for survival in fjords. Specifically, living in dark, deep water reduces visual predation and population loss encountered in the upper layer due to advective processes.</p> </li> <li> <p><a target="_blank" onclick="trackOutboundLink('http://adsabs.harvard.edu/abs/2013EGUGA..1514090V','NASAADS'); return false;" href="http://adsabs.harvard.edu/abs/2013EGUGA..1514090V"><span>A New Trait-Based Auto-Emergent Model for <span class="hlt">Zooplankton</span> and Confrontation with Size-Structured Observations from the Bay of Biscay</span></a></p> <p><a target="_blank" href="http://adsabs.harvard.edu/abstract_service.html">NASA Astrophysics Data System (ADS)</a></p> <p>Vandromme, Pieter; Sourisseau, Marc; Huret, Martin</p> <p>2013-04-01</p> <p><span class="hlt">Zooplankton</span> plays a significant role in marine ecosystems bridging the gap between primary producers and top consumers and interacting with the particle flux through complex dynamics. Scarcity of data and complexity of observing <span class="hlt">zooplankton</span> make it difficult to integrate it in biogeochemical models where it is most often formulated in a simpler manner, i.e. classic box models with usually two compartments (micro and meso/macro <span class="hlt">zooplankton</span>). Recent advances in automatic sizing, counting and identification allow better estimates of the dynamics and distribution of <span class="hlt">zooplankton</span>, notably through the measurement of its size structure, and for <span class="hlt">zooplankton</span> size matter. Most <span class="hlt">zooplankton</span> physiological rates as well as predator:prey interactions can be significantly relied to individuals size through allometric relations. Such size-dependency was used in recent models. Yet, these models were neither confronted to observations nor integrated in 3D biogeochemical models. Here we propose a newly developed model of <span class="hlt">zooplankton</span> dynamics based on size-dependent allometric relations but which allows various diet types regardless of the size. A size and a degree of herbivory is randomly drawn for each <span class="hlt">zooplankton</span> species generated within the model (up to 400 here, limited by actual computational costs). By generating random degree of herbivory <span class="hlt">zooplankton</span> species of same size could have various diet (from herbivore to carnivore). Other parameters leading to various reproductive strategies or vertical migration could also be drawn randomly (not tested here). The <span class="hlt">zooplankton</span> model is coupled to the 3D biogeochemical model MARS3D on a test case representing a simplified view of the Bay of Biscay (i.e., continental shelf, estuary, tides). The model shows auto-emergent properties with the selection of size/diet most adapted to local conditions (here offshore vs. coastal, estuary…). Then, patterns of the modeled size-structure of the <span class="hlt">zooplankton</span> are confronted to the ones observed during</p> </li> <li> <p><a target="_blank" onclick="trackOutboundLink('https://www.ncbi.nlm.nih.gov/pubmed/19853879','PUBMED'); return false;" href="https://www.ncbi.nlm.nih.gov/pubmed/19853879"><span>Role of predation by <span class="hlt">zooplankton</span> in transport and fate of protozoan (oo)cysts in granular activated carbon filtration.</span></a></p> <p><a target="_blank" href="https://www.ncbi.nlm.nih.gov/entrez/query.fcgi?DB=pubmed">PubMed</a></p> <p>Bichai, Françoise; Barbeau, Benoit; Dullemont, Yolanda; Hijnen, Wim</p> <p>2010-02-01</p> <p>The significance of <span class="hlt">zooplankton</span> in the transport and fate of pathogenic organisms in drinking water is poorly understood, although many hints of the role of predation in the persistence of microorganisms through water treatment processes can be found in literature. The objective of this study was to assess the impact of predation by natural <span class="hlt">zooplankton</span> on the transport and fate of protozoan (oo)cysts in granular activated carbon (GAC) filtration process. UV-irradiated unlabelled Cryptosporidium parvum and Giardia lamblia (oo)cysts were seeded into two pilot-scale GAC filtration columns operated under full-scale conditions. In a two-week period after seeding, a reduction of free (oo)cysts retained in the filter bed was observed. <span class="hlt">Zooplankton</span> was isolated from the filter bed and effluent water on a 30 microm net before and during the two-week period after seeding; it was enumerated and identified. Rotifers, which are potential predators of (oo)cysts, accounted for the major part of the isolated <span class="hlt">zooplankton</span>. Analytical methods were developed to detect (oo)cysts internalized in natural <span class="hlt">zooplankton</span> isolated from the filter bed and effluent water. Sample sonication was optimized to disrupt <span class="hlt">zooplankton</span> organisms and release internalized microorganisms. (Oo)cysts released from <span class="hlt">zooplankton</span> after sonication were isolated by IMS and stained (EasyStain) for microscopic counting. Both Cryptosporidium and Giardia (oo)cysts were detected in association with <span class="hlt">zooplankton</span> in the filter bed samples as well as in the effluent of GAC filters. The results of this study suggest that predation by <span class="hlt">zooplankton</span> can play a role in the remobilization of persistent pathogens such as Cryptosporidium and Giardia (oo)cysts retained in GAC filter beds, and consequently in the transmission of these pathogens in drinking water. Copyright 2009 Elsevier Ltd. All rights reserved.</p> </li> <li> <p><a target="_blank" onclick="trackOutboundLink('https://www.pubmedcentral.nih.gov/articlerender.fcgi?tool=pmcentrez&artid=5261730','PMC'); return false;" href="https://www.pubmedcentral.nih.gov/articlerender.fcgi?tool=pmcentrez&artid=5261730"><span>Evidence of a Shift in the Littoral Fish <span class="hlt">Community</span> of the Sacramento-San Joaquin Delta</span></a></p> <p><a target="_blank" href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?DB=pmc">PubMed Central</a></p> <p>Farruggia, Mary Jade; Schreier, Brian; Sommer, Ted</p> <p>2017-01-01</p> <p>Many estuarine and freshwater ecosystems worldwide have undergone substantial changes due to multiple anthropogenic stressors. Over the past two decades, the Sacramento-San Joaquin Delta (Delta) in California, USA, saw a severe decline in pelagic fishes, a shift in <span class="hlt">zooplankton</span> <span class="hlt">community</span> <span class="hlt">composition</span>, and a rapid expansion of invasive aquatic vegetation. To evaluate whether major changes have also occurred in the littoral fish <span class="hlt">community</span>, we analyzed a beach seine survey dataset collected from 1995 to 2015 from 26 sites within the Delta. We examined changes in the Delta fish <span class="hlt">community</span> at three different ecological scales (species, <span class="hlt">community</span>, and biomass), using clustering analyses, trend tests, and change-point analyses. We found that the annual catch per effort for many introduced species and some native species have increased since 1995, while few experienced a decline. We also observed a steady pattern of change over time in annual fish <span class="hlt">community</span> <span class="hlt">composition</span>, driven primarily by a steady increase in non-native Centrarchid species. Lastly, we found that littoral fish biomass has essentially doubled over the 21-year study period, with Mississippi Silverside Menidia audens and fishes in the Centrarchidae family driving most of this increase. The changes in the catch per effort, fish <span class="hlt">community</span> <span class="hlt">composition</span>, and biomass per volume indicate that a shift has occurred in the Delta littoral fish <span class="hlt">community</span> and that the same factors affecting the Delta’s pelagic food web may have been a key driver of change. PMID:28118393</p> </li> <li> <p><a target="_blank" onclick="trackOutboundLink('https://www.ncbi.nlm.nih.gov/pubmed/28118393','PUBMED'); return false;" href="https://www.ncbi.nlm.nih.gov/pubmed/28118393"><span>Evidence of a Shift in the Littoral Fish <span class="hlt">Community</span> of the Sacramento-San Joaquin Delta.</span></a></p> <p><a target="_blank" href="https://www.ncbi.nlm.nih.gov/entrez/query.fcgi?DB=pubmed">PubMed</a></p> <p>Mahardja, Brian; Farruggia, Mary Jade; Schreier, Brian; Sommer, Ted</p> <p>2017-01-01</p> <p>Many estuarine and freshwater ecosystems worldwide have undergone substantial changes due to multiple anthropogenic stressors. Over the past two decades, the Sacramento-San Joaquin Delta (Delta) in California, USA, saw a severe decline in pelagic fishes, a shift in <span class="hlt">zooplankton</span> <span class="hlt">community</span> <span class="hlt">composition</span>, and a rapid expansion of invasive aquatic vegetation. To evaluate whether major changes have also occurred in the littoral fish <span class="hlt">community</span>, we analyzed a beach seine survey dataset collected from 1995 to 2015 from 26 sites within the Delta. We examined changes in the Delta fish <span class="hlt">community</span> at three different ecological scales (species, <span class="hlt">community</span>, and biomass), using clustering analyses, trend tests, and change-point analyses. We found that the annual catch per effort for many introduced species and some native species have increased since 1995, while few experienced a decline. We also observed a steady pattern of change over time in annual fish <span class="hlt">community</span> <span class="hlt">composition</span>, driven primarily by a steady increase in non-native Centrarchid species. Lastly, we found that littoral fish biomass has essentially doubled over the 21-year study period, with Mississippi Silverside Menidia audens and fishes in the Centrarchidae family driving most of this increase. The changes in the catch per effort, fish <span class="hlt">community</span> <span class="hlt">composition</span>, and biomass per volume indicate that a shift has occurred in the Delta littoral fish <span class="hlt">community</span> and that the same factors affecting the Delta's pelagic food web may have been a key driver of change.</p> </li> <li> <p><a target="_blank" onclick="trackOutboundLink('http://adsabs.harvard.edu/abs/2016GeoRL..43.3746U','NASAADS'); return false;" href="http://adsabs.harvard.edu/abs/2016GeoRL..43.3746U"><span>Vertical redistribution of <span class="hlt">zooplankton</span> in an oligotrophic lake associated with reduction in ultraviolet radiation by wildfire smoke</span></a></p> <p><a target="_blank" href="http://adsabs.harvard.edu/abstract_service.html">NASA Astrophysics Data System (ADS)</a></p> <p>Urmy, Samuel S.; Williamson, Craig E.; Leach, Taylor H.; Schladow, S. Geoffrey; Overholt, Erin P.; Warren, Joseph D.</p> <p>2016-04-01</p> <p>We used a natural experiment to test whether wildfire smoke induced changes in the vertical distribution of <span class="hlt">zooplankton</span> in Lake Tahoe by decreasing incident ultraviolet radiation (UV). Fires have a variety of effects on aquatic ecosystems, but these impacts are poorly understood and have rarely been observed directly. UV is an important driver of <span class="hlt">zooplankton</span> vertical migration, and wildfires may alter it over large spatial scales. We measured UV irradiance and the distribution of <span class="hlt">zooplankton</span> on two successive days. On one day, smoke haze from a nearby wildfire reduced incident UV radiation by up to 9%, but not irradiance in the visible spectrum. <span class="hlt">Zooplankton</span> responded by positioning themselves, on average, 4.1 m shallower in the lake. While a limited data set such as this requires cautious interpretation, our results suggest that smoke from wildfires can change the UV environment and distribution of <span class="hlt">zooplankton</span>. This process may be important in drought-prone regions with increasingly frequent wildfires, and globally due to widespread biomass burning.</p> </li> <li> <p><a target="_blank" onclick="trackOutboundLink('https://cfpub.epa.gov/si/si_public_record_report.cfm?dirEntryId=104688&Lab=NHEERL&keyword=manpower+AND+based+AND+research&actType=&TIMSType=+&TIMSSubTypeID=&DEID=&epaNumber=&ntisID=&archiveStatus=Both&ombCat=Any&dateBeginCreated=&dateEndCreated=&dateBeginPublishedPresented=&dateEndPublishedPresented=&dateBeginUpdated=&dateEndUpdated=&dateBeginCompleted=&dateEndCompleted=&personID=&role=Any&journalID=&publisherID=&sortBy=revisionDate&count=50','EPA-EIMS'); return false;" href="https://cfpub.epa.gov/si/si_public_record_report.cfm?dirEntryId=104688&Lab=NHEERL&keyword=manpower+AND+based+AND+research&actType=&TIMSType=+&TIMSSubTypeID=&DEID=&epaNumber=&ntisID=&archiveStatus=Both&ombCat=Any&dateBeginCreated=&dateEndCreated=&dateBeginPublishedPresented=&dateEndPublishedPresented=&dateBeginUpdated=&dateEndUpdated=&dateBeginCompleted=&dateEndCompleted=&personID=&role=Any&journalID=&publisherID=&sortBy=revisionDate&count=50"><span>SPATIAL PATTERNS IN ASSEMBLAGE STRUCTURES OF PELAGIC FORAGE FISH AND <span class="hlt">ZOOPLANKTON</span> IN WESTERN LAKE SUPERIOR</span></a></p> <p><a target="_blank" href="http://oaspub.epa.gov/eims/query.page">EPA Science Inventory</a></p> <p></p> <p></p> <p>This manuscript reports on the spatial distribution of <span class="hlt">zooplankton</span> and forage fish in western Lake Superior. Fish and <span class="hlt">zooplankton</span> assemblages are shown to differ substantially in abundance and size structure both between the open lake and nearshore regions and between two differe...</p> </li> <li> <p><a target="_blank" onclick="trackOutboundLink('https://www.ncbi.nlm.nih.gov/pubmed/26066061','PUBMED'); return false;" href="https://www.ncbi.nlm.nih.gov/pubmed/26066061"><span>Ingestion of Microplastics by <span class="hlt">Zooplankton</span> in the Northeast Pacific Ocean.</span></a></p> <p><a target="_blank" href="https://www.ncbi.nlm.nih.gov/entrez/query.fcgi?DB=pubmed">PubMed</a></p> <p>Desforges, Jean-Pierre W; Galbraith, Moira; Ross, Peter S</p> <p>2015-10-01</p> <p>Microplastics are increasingly recognized as being widespread in the world's oceans, but relatively little is known about ingestion by marine biota. In light of the potential for microplastic fibers and fragments to be taken up by small marine organisms, we examined plastic ingestion by two foundation species near the base of North Pacific marine food webs, the calanoid copepod Neocalanus cristatus and the euphausiid Euphausia pacifia. We developed an acid digestion method to assess plastic ingestion by individual <span class="hlt">zooplankton</span> and detected microplastics in both species. Encounter rates resulting from ingestion were 1 particle/every 34 copepods and 1/every 17 euphausiids (euphausiids > copepods; p = 0.01). Consistent with differences in the size selection of food between these two <span class="hlt">zooplankton</span> species, the ingested particle size was greater in euphausiids (816 ± 108 μm) than in copepods (556 ± 149 μm) (p = 0.014). The contribution of ingested microplastic fibres to total plastic decreased with distance from shore in euphausiids (r (2) = 70, p = 0.003), corresponding to patterns in our previous observations of microplastics in seawater samples from the same locations. This first evidence of microplastic ingestion by marine <span class="hlt">zooplankton</span> indicate that species at lower trophic levels of the marine food web are mistaking plastic for food, which raises fundamental questions about potential risks to higher trophic level species. One concern is risk to salmon: We estimate that consumption of microplastic-containing <span class="hlt">zooplankton</span> will lead to the ingestion of 2-7 microplastic particles/day by individual juvenile salmon in coastal British Columbia, and ≤91 microplastic particles/day in returning adults.</p> </li> <li> <p><a target="_blank" onclick="trackOutboundLink('https://www.ncbi.nlm.nih.gov/pubmed/24360334','PUBMED'); return false;" href="https://www.ncbi.nlm.nih.gov/pubmed/24360334"><span>Annual variation in neustonic micro- and meso-plastic particles and <span class="hlt">zooplankton</span> in the Bay of Calvi (Mediterranean-Corsica).</span></a></p> <p><a target="_blank" href="https://www.ncbi.nlm.nih.gov/entrez/query.fcgi?DB=pubmed">PubMed</a></p> <p>Collignon, Amandine; Hecq, Jean-Henri; Galgani, François; Collard, France; Goffart, Anne</p> <p>2014-02-15</p> <p>The annual variation in neustonic plastic particles and <span class="hlt">zooplankton</span> was studied in the Bay of Calvi (Corsica) between 30 August 2011 and 7 August 2012. Plastic particles were classified into three size classes, small microplastics (0.2-2mm), large microplastics (2-5mm) and mesoplastics (5-10mm). 74% of the 38 samples contained plastic particles of varying <span class="hlt">composition</span>: e.g. filaments, polystyrene, thin plastic films. An average concentration of 6.2 particles/100 m(2) was observed. The highest abundance values (69 particles/100 m(2)) observed occurred during periods of low offshore wind conditions. These values rose in the same order of magnitude as in previous studies in the North Western Mediterranean. The relationships between the abundance values of the size classes between <span class="hlt">zooplankton</span> and plastic particles were then examined. The ratio for the intermediate size class (2-5mm) reached 2.73. This would suggest a potential confusion for predators regarding planktonic prey of this size class. Copyright © 2013 Elsevier Ltd. All rights reserved.</p> </li> <li> <p><a target="_blank" onclick="trackOutboundLink('https://www.ncbi.nlm.nih.gov/pubmed/29696653','PUBMED'); return false;" href="https://www.ncbi.nlm.nih.gov/pubmed/29696653"><span>River flow, <span class="hlt">zooplankton</span> and dominant zooplanktivorous fish dynamics in a warm-temperate South African estuary.</span></a></p> <p><a target="_blank" href="https://www.ncbi.nlm.nih.gov/entrez/query.fcgi?DB=pubmed">PubMed</a></p> <p>Mbandzi, N; Wasserman, R J; Deyzel, S H P; Vine, N G; Whitfield, A K</p> <p>2018-06-01</p> <p>The possible links between river flow, <span class="hlt">zooplankton</span> abundance and the responses of zooplanktivorous fishes to physico-chemical and food resource changes are assessed. To this end, the seasonal abundance, distribution and diet of the estuarine round-herring Gilchristella aestuaria and Cape silverside Atherina breviceps were studied in the Kariega Estuary. Spatio-temporal differences were determined for selected physico-chemical variables, <span class="hlt">zooplankton</span> abundance and zooplanktivorous fish abundance and distribution. Results indicated that, following a river flood event in winter (>30 m 3  s -1 ), altered physico-chemical conditions occurred throughout the estuary and depressed <span class="hlt">zooplankton</span> stocks. Abundance of G. aestuaria was highest in spring, with this species dominant in the upper and middle zones of the estuary, while A. breviceps was dominant in summer and preferred the middle and lower zones. The catch per unit of effort of both zooplanktivores also declined significantly following the flooding, thus suggesting that these fishes are reliant on <span class="hlt">zooplankton</span> as a primary food source for healthy populations. Copepods dominated the stomach contents of both fish species, indicating a potential for strong interspecific competition for food, particularly in the middle reaches. Temporal differences were evident in dietary overlap between the two zooplanktivorous fish species and were correlated with river flow, <span class="hlt">zooplankton</span> availability and fish distribution. The findings of this study emphasize the close trophic linkages between <span class="hlt">zooplankton</span> and zooplanktivorous fishes under changing estuarine environmental conditions, particularly river flow and provide important baseline information for similar studies elsewhere in South Africa and the rest of the world. © 2018 The Fisheries Society of the British Isles.</p> </li> <li> <p><a target="_blank" onclick="trackOutboundLink('http://adsabs.harvard.edu/abs/1996GeCoA..60.2265H','NASAADS'); return false;" href="http://adsabs.harvard.edu/abs/1996GeCoA..60.2265H"><span>Steryl chlorin esters are formed by <span class="hlt">zooplankton</span> herbivory</span></a></p> <p><a target="_blank" href="http://adsabs.harvard.edu/abstract_service.html">NASA Astrophysics Data System (ADS)</a></p> <p>Harradine, Paul J.; Harris, Philip G.; Head, Robert N.; Harris, Roger P.; Maxwell, James R.</p> <p>1996-06-01</p> <p>Steryl chlorin esters (SCEs) were formed in laboratory feeding experiments when starved females of the copepod Calanus helgolandicus were allowed to graze on a culture of the diatom Thalassiosira weissflogii. They were found when the <span class="hlt">zooplankton</span> had grazed for 48 hours and were also identified in fecal pellets subsequently left in seawater in the dark. The distribution contained the diatom sterols in approximately the same relative abundance as the free sterols in the substrate, as well as the most abundant copepod sterol, all esterified to the chlorophyll a degradation product, pyropheophorbide a. Hence, in studies aimed at using sedimentary SCE sterol distributions as indicators of phytoplankton <span class="hlt">community</span> structure, cholesterol should not be considered since the cholesteryl ester of pyropheophorbide a was a significant component in the fecal pellet SCEs. The findings represent a step forward in unravelling the transformations undergone by chlorophyll a in aquatic environments, since the abundance and wide occurrence of sedimentary SCEs indicate that they are a significant preservational sink for the chlorophyll a biosynthesised in the photic zone.</p> </li> <li> <p><a target="_blank" onclick="trackOutboundLink('http://adsabs.harvard.edu/abs/2017DSRI..126..103D','NASAADS'); return false;" href="http://adsabs.harvard.edu/abs/2017DSRI..126..103D"><span>Deep-water <span class="hlt">zooplankton</span> in the Mediterranean Sea: Results from a continuous, synchronous sampling over different regions using sediment traps</span></a></p> <p><a target="_blank" href="http://adsabs.harvard.edu/abstract_service.html">NASA Astrophysics Data System (ADS)</a></p> <p>Danovaro, R.; Carugati, L.; Boldrin, A.; Calafat, A.; Canals, M.; Fabres, J.; Finlay, K.; Heussner, S.; Miserocchi, S.; Sanchez-Vidal, A.</p> <p>2017-08-01</p> <p>Information on the dynamics of deep-sea biota is extremely scant particularly for long-term time series on deep-sea <span class="hlt">zooplankton</span>. Here, we present the results of a deep-sea <span class="hlt">zooplankton</span> investigation over one annual cycle based on samples from sediment trap moorings in three sub-basins along the Mediterranean Sea. Deep-sea <span class="hlt">zooplankton</span> assemblages were dominated by copepods, as in shallow waters, only in the Adriatic Sea (>60% of total abundance), but not in the deep Ionian Sea, where ostracods represented >80%, neither in the deep Alboran Sea, where polychaetes were >70%. We found that deep-sea <span class="hlt">zooplankton</span> assemblages: i) are subjected to changes in their abundance and structure over time, ii) are characterized by different dominant taxa in different basins, and iii) display clear taxonomic segregation between shallow and near-bottom waters. <span class="hlt">Zooplankton</span> biodiversity decreases with increasing water depth, but the equitability increases. We suggest here that variations of <span class="hlt">zooplankton</span> abundance and assemblage structure are likely influenced by the trophic condition characterizing the basins. Our findings provide new insights on this largely unknown component of the deep ocean, and suggest that changes in the export of organic matter from the photic zone, such as those expected as a consequence of global change, can significantly influence <span class="hlt">zooplankton</span> assemblages in the largest biome on Earth.</p> </li> <li> <p><a target="_blank" onclick="trackOutboundLink('https://pubs.er.usgs.gov/publication/70175341','USGSPUBS'); return false;" href="https://pubs.er.usgs.gov/publication/70175341"><span>Experimental whole-lake increase of dissolved organic carbon concentration produces unexpected increase in crustacean <span class="hlt">zooplankton</span> density</span></a></p> <p><a target="_blank" href="http://pubs.er.usgs.gov/pubs/index.jsp?view=adv">USGS Publications Warehouse</a></p> <p>Kelly, Patrick T.; Craig, Nicola; Solomon, Christopher T.; Weidel, Brian C.; Zwart, Jacob A.; Jones, Stuart E.</p> <p>2016-01-01</p> <p>The observed pattern of lake browning, or increased terrestrial dissolved organic carbon (DOC) concentration, across the northern hemisphere has amplified the importance of understanding how consumer productivity varies with DOC concentration. Results from comparative studies suggest these increased DOC concentrations may reduce crustacean <span class="hlt">zooplankton</span> productivity due to reductions in resource quality and volume of suitable habitat. Although these spatial comparisons provide an expectation for the response of <span class="hlt">zooplankton</span> productivity as DOC concentration increases, we still have an incomplete understanding of how <span class="hlt">zooplankton</span> respond to temporal increases in DOC concentration within a single system. As such, we used a whole-lake manipulation, in which DOC concentration was increased from 8 to 11 mg L−1 in one basin of a manipulated lake, to test the hypothesis that crustacean <span class="hlt">zooplankton</span> production should subsequently decrease. In contrast to the spatially derived expectation of sharp DOC-mediated decline, we observed a small increase in <span class="hlt">zooplankton</span> densities in response to our experimental increase in DOC concentration of the treatment basin. This was due to significant increases in gross primary production and resource quality (lower seston carbon-to-phosphorus ratio; C:P). These results demonstrate that temporal changes in lake characteristics due to increased DOC may impact <span class="hlt">zooplankton</span> in ways that differ from those observed in spatial surveys. We also identified significant interannual variability across our study region, which highlights potential difficulty in detecting temporal responses of organism abundances to gradual environmental change (e.g., browning).</p> </li> <li> <p><a target="_blank" onclick="trackOutboundLink('http://adsabs.harvard.edu/abs/2016PrOce.144...62C','NASAADS'); return false;" href="http://adsabs.harvard.edu/abs/2016PrOce.144...62C"><span>Acoustic insights into the <span class="hlt">zooplankton</span> dynamics of the eastern Weddell Sea</span></a></p> <p><a target="_blank" href="http://adsabs.harvard.edu/abstract_service.html">NASA Astrophysics Data System (ADS)</a></p> <p>Cisewski, Boris; Strass, Volker H.</p> <p>2016-05-01</p> <p>The success of any efforts to determine the effects of climate change on marine ecosystems depends on understanding in the first instance the natural variations, which contemporarily occur on the interannual and shorter time scales. Here we present results on the environmental controls of <span class="hlt">zooplankton</span> distribution patterns and behaviour in the eastern Weddell Sea, Southern Ocean. <span class="hlt">Zooplankton</span> abundance and vertical migration are derived from the mean volume backscattering strength (MVBS) and the vertical velocity measured by moored acoustic Doppler current profilers (ADCPs), which were deployed simultaneously at 64°S, 66.5°S and 69°S along the Greenwich Meridian from February, 2005, until March, 2008. While these time series span a period of full three years they resolve hourly changes. A highly persistent behavioural pattern found at all three mooring locations is the synchronous diel vertical migration (DVM) of two distinct groups of <span class="hlt">zooplankton</span> that migrate between a deep residence depth during daytime and a shallow depth during nighttime. The DVM was closely coupled to the astronomical daylight cycles. However, while the DVM was symmetric around local noon, the annual modulation of the DVM was clearly asymmetric around winter solstice or summer solstice, respectively, at all three mooring sites. DVM at our observation sites persisted throughout winter, even at the highest latitude exposed to the polar night. Since the magnitude as well as the relative rate of change of illumination is minimal at this time, we propose that the ultimate causes of DVM separated from the light-mediated proximal cue that coordinates it. In all three years, a marked change in the migration behaviour occurred in late spring (late October/early November), when DVM ceased. The complete suspension of DVM after early November is possibly caused by the combination of two factors: (1) increased availability of food in the surface mixed layer provided by the phytoplankton spring bloom, and</p> </li> <li> <p><a target="_blank" onclick="trackOutboundLink('https://www.ncbi.nlm.nih.gov/pubmed/28120366','PUBMED'); return false;" href="https://www.ncbi.nlm.nih.gov/pubmed/28120366"><span>Predator personality structures prey <span class="hlt">communities</span> and trophic cascades.</span></a></p> <p><a target="_blank" href="https://www.ncbi.nlm.nih.gov/entrez/query.fcgi?DB=pubmed">PubMed</a></p> <p>Start, Denon; Gilbert, Benjamin</p> <p>2017-03-01</p> <p>Intraspecific variation is central to our understanding of evolution and population ecology, yet its consequences for <span class="hlt">community</span> ecology are poorly understood. Animal personality - consistent individual differences in suites of behaviours - may be particularly important for trophic dynamics, where predator personality can determine activity rates and patterns of attack. We used mesocosms with aquatic food webs in which the top predator (dragonfly nymphs) varied in activity and subsequent attack rates on <span class="hlt">zooplankton</span>, and tested the effects of predator personality. We found support for four hypotheses: (1) active predators disproportionately reduce the abundance of prey, (2) active predators select for predator-resistant prey species, (3) active predators strengthen trophic cascades (increase phytoplankton abundance) and (4) active predators are more likely to cannibalise one another, weakening all other trends when at high densities. These results suggest that intraspecific variation in predator personality is an important determinant of prey abundance, <span class="hlt">community</span> <span class="hlt">composition</span> and trophic cascades. © 2017 John Wiley & Sons Ltd/CNRS.</p> </li> <li> <p><a target="_blank" onclick="trackOutboundLink('https://pubs.er.usgs.gov/publication/70028371','USGSPUBS'); return false;" href="https://pubs.er.usgs.gov/publication/70028371"><span>Seasonal dynamics of microbial <span class="hlt">community</span> <span class="hlt">composition</span> and function in oak canopy and open grassland soils</span></a></p> <p><a target="_blank" href="http://pubs.er.usgs.gov/pubs/index.jsp?view=adv">USGS Publications Warehouse</a></p> <p>Waldrop, M.P.; Firestone, M.K.</p> <p>2006-01-01</p> <p>Soil microbial <span class="hlt">communities</span> are closely associated with aboveground plant <span class="hlt">communities</span>, with multiple potential drivers of this relationship. Plants can affect available soil carbon, temperature, and water content, which each have the potential to affect microbial <span class="hlt">community</span> <span class="hlt">composition</span> and function. These same variables change seasonally, and thus plant control on microbial <span class="hlt">community</span> <span class="hlt">composition</span> may be modulated or overshadowed by annual climatic patterns. We examined microbial <span class="hlt">community</span> <span class="hlt">composition</span>, C cycling processes, and environmental data in California annual grassland soils from beneath oak canopies and in open grassland areas to distinguish factors controlling microbial <span class="hlt">community</span> <span class="hlt">composition</span> and function seasonally and in association with the two plant overstory <span class="hlt">communities</span>. Every 3 months for up to 2 years, we monitored microbial <span class="hlt">community</span> <span class="hlt">composition</span> using phospholipid fatty acid (PLFA) analysis, microbial biomass, respiration rates, microbial enzyme activities, and the activity of microbial groups using isotope labeling of PLFA biomarkers (13C-PLFA) . Distinct microbial <span class="hlt">communities</span> were associated with oak canopy soils and open grassland soils and microbial <span class="hlt">communities</span> displayed seasonal patterns from year to year. The effects of plant species and seasonal climate on microbial <span class="hlt">community</span> <span class="hlt">composition</span> were similar in magnitude. In this Mediterranean ecosystem, plant control of microbial <span class="hlt">community</span> <span class="hlt">composition</span> was primarily due to effects on soil water content, whereas the changes in microbial <span class="hlt">community</span> <span class="hlt">composition</span> seasonally appeared to be due, in large part, to soil temperature. Available soil carbon was not a significant control on microbial <span class="hlt">community</span> <span class="hlt">composition</span>. Microbial <span class="hlt">community</span> <span class="hlt">composition</span> (PLFA) and 13C-PLFA ordination values were strongly related to intra-annual variability in soil enzyme activities and soil respiration, but microbial biomass was not. In this Mediterranean climate, soil microclimate appeared to be the master variable controlling</p> </li> <li> <p><a target="_blank" onclick="trackOutboundLink('https://pubs.er.usgs.gov/publication/70028680','USGSPUBS'); return false;" href="https://pubs.er.usgs.gov/publication/70028680"><span>Food habits of Juvenile American Shad and dynamics of <span class="hlt">zooplankton</span> in the lower Columbia River</span></a></p> <p><a target="_blank" href="http://pubs.er.usgs.gov/pubs/index.jsp?view=adv">USGS Publications Warehouse</a></p> <p>Haskell, C.A.; Tiffan, K.F.; Rondorf, D.W.</p> <p>2006-01-01</p> <p>As many as 2.4 million adult American shad annually pass John Day Dam, Columbia River to spawn upriver, yet food web interactions of juvenile shad rearing in John Day Reservoir are unexplored. We collected <span class="hlt">zooplankton</span> and conducted mid-water trawls in McNary (June-July) and John Day reservoirs (August-November) from 1994 through 1996 during the outmigration of subyearling American shad and Chinook salmon. Juvenile American shad were abundant and represented over 98% of the trawl catch in late summer. The five major taxa collected in <span class="hlt">zooplankton</span> tows were Bosmina longirostris, Daphnia, cyclopoid cope-pods, rotifers, and calanoid copepods. We evaluated total crustacean <span class="hlt">zooplankton</span> abundance and Daphnia biomass in relation to water temperature, flow, depth, diel period, and cross-sectional location using multiple regression. Differences in <span class="hlt">zooplankton</span> abundance were largely due to differences in water temperature and flow. Spatial variation in total <span class="hlt">zooplankton</span> abundance was observed in McNary Reservoir, but not in John Day Reservoir. Juvenile American shad generally fed on numerically abundant prey, despite being less preferred than larger bodied <span class="hlt">zooplankton</span>. A decrease in cladoceran abundance and size in August coupled with large percentages of Daphnia in juvenile American shad stomachs indicated heavy planktivory. Smaller juvenile American shad primarily fed on Daphnia in August, but switched to more evasive copepods as the mean size of fish increased and Daphnia abundance declined. Because Daphnia are particularly important prey items for subyearling Chinook salmon in mainstem reservoirs in mid to late summer, alterations in the cladoceran food base is of concern for the management of outmigrating salmonids and other Columbia River fishes. ?? 2006 by the Northwest Scientific Association. All rights reserved.</p> </li> <li> <p><a target="_blank" onclick="trackOutboundLink('https://www.ncbi.nlm.nih.gov/pubmed/26322029','PUBMED'); return false;" href="https://www.ncbi.nlm.nih.gov/pubmed/26322029"><span><span class="hlt">Compositional</span> differences in simulated root exudates elicit a limited functional and <span class="hlt">compositional</span> response in soil microbial <span class="hlt">communities</span>.</span></a></p> <p><a target="_blank" href="https://www.ncbi.nlm.nih.gov/entrez/query.fcgi?DB=pubmed">PubMed</a></p> <p>Strickland, Michael S; McCulley, Rebecca L; Nelson, Jim A; Bradford, Mark A</p> <p>2015-01-01</p> <p>Inputs of low molecular weight carbon (LMW-C) to soil - primarily via root exudates- are expected to be a major driver of microbial activity and source of stable soil organic carbon. It is expected that variation in the type and <span class="hlt">composition</span> of LMW-C entering soil will influence microbial <span class="hlt">community</span> <span class="hlt">composition</span> and function. If this is the case then short-term changes in LMW-C inputs may alter processes regulated by these <span class="hlt">communities</span>. To determine if change in the <span class="hlt">composition</span> of LMW-C inputs influences microbial <span class="hlt">community</span> function and <span class="hlt">composition</span>, we conducted a 90 day microcosm experiment whereby soils sourced from three different land covers (meadows, deciduous forests, and white pine stands) were amended, at low concentrations, with one of eight simulated root exudate treatments. Treatments included no addition of LMW-C, and the full factorial combination of glucose, glycine, and oxalic acid. After 90 days, we conducted a functional response assay and determined microbial <span class="hlt">composition</span> via phospholipid fatty acid analysis. Whereas we noted a statistically significant effect of exudate treatments, this only accounted for ∼3% of the variation observed in function. In comparison, land cover and site explained ∼46 and ∼41% of the variation, respectively. This suggests that exudate <span class="hlt">composition</span> has little influence on function compared to site/land cover specific factors. Supporting the finding that exudate effects were minor, we found that an absence of LMW-C elicited the greatest difference in function compared to those treatments receiving any LMW-C. Additionally, exudate treatments did not alter microbial <span class="hlt">community</span> <span class="hlt">composition</span> and observable differences were instead due to land cover. These results confirm the strong effects of land cover/site legacies on soil microbial <span class="hlt">communities</span>. In contrast, short-term changes in exudate <span class="hlt">composition</span>, at meaningful concentrations, may have little impact on microbial function and <span class="hlt">composition</span>.</p> </li> </ol> <div class="pull-right"> <ul class="pagination"> <li><a href="#" onclick='return showDiv("page_1");'>«</a></li> <li><a href="#" onclick='return showDiv("page_13");'>13</a></li> <li><a href="#" onclick='return showDiv("page_14");'>14</a></li> <li class="active"><span>15</span></li> <li><a href="#" onclick='return showDiv("page_16");'>16</a></li> <li><a href="#" onclick='return showDiv("page_17");'>17</a></li> <li><a href="#" onclick='return showDiv("page_25");'>»</a></li> </ul> </div> </div><!-- col-sm-12 --> </div><!-- row --> </div><!-- page_15 --> <div id="page_16" class="hiddenDiv"> <div class="row"> <div class="col-sm-12"> <div class="pull-right"> <ul class="pagination"> <li><a href="#" onclick='return showDiv("page_1");'>«</a></li> <li><a href="#" onclick='return showDiv("page_14");'>14</a></li> <li><a href="#" onclick='return showDiv("page_15");'>15</a></li> <li class="active"><span>16</span></li> <li><a href="#" onclick='return showDiv("page_17");'>17</a></li> <li><a href="#" onclick='return showDiv("page_18");'>18</a></li> <li><a href="#" onclick='return showDiv("page_25");'>»</a></li> </ul> </div> </div> </div> <div class="row"> <div class="col-sm-12"> <ol class="result-class" start="301"> <li> <p><a target="_blank" onclick="trackOutboundLink('http://adsabs.harvard.edu/abs/2004DSRI...51.1283R','NASAADS'); return false;" href="http://adsabs.harvard.edu/abs/2004DSRI...51.1283R"><span>How well does the Continuous Plankton Recorder (CPR) sample <span class="hlt">zooplankton</span>? A comparison with the Longhurst Hardy Plankton Recorder (LHPR) in the northeast Atlantic</span></a></p> <p><a target="_blank" href="http://adsabs.harvard.edu/abstract_service.html">NASA Astrophysics Data System (ADS)</a></p> <p>Richardson, Anthony J.; John, Eurgain H.; Irigoien, Xabier; Harris, Roger P.; Hays, Graeme C.</p> <p>2004-09-01</p> <p>The Continuous Plankton Recorder (CPR) survey has collected data on basin-scale <span class="hlt">zooplankton</span> abundance in the North Atlantic since the 1930s. These data have been used in many studies to elucidate seasonal patterns and long-term change in plankton populations, as well as more recently to validate ecosystem models. There has, however, been relatively little comparison of the data from the CPR with that from other samplers. In this study we compare <span class="hlt">zooplankton</span> abundance estimated from the CPR in the northeast Atlantic with near-surface samples collected by a Longhurst-Hardy Plankton Recorder (LHPR) at Ocean Weather Station India (59°N, 19°W) between 1971 and 1975. Comparisons were made for six common copepods in the region: Acartia clausi, Calanus finmarchicus, Euchaeta norvegica, Metridia lucens, Oithona sp., and Pleuromamma robusta. Seasonal cycles based on CPR data were similar to those recorded by the LHPR. Differences in absolute abundances were apparent, however, with the CPR underestimating abundances by a factor of between 5 and 40, with the exception of A. clausi. Active avoidance by <span class="hlt">zooplankton</span> is thought to be responsible. This avoidance is species specific, so that care must be taken describing <span class="hlt">communities</span>, as the CPR emphasises those species that are preferentially caught, a problem common to many plankton samplers.</p> </li> <li> <p><a target="_blank" onclick="trackOutboundLink('http://www.dtic.mil/docs/citations/ADA637478','DTIC-ST'); return false;" href="http://www.dtic.mil/docs/citations/ADA637478"><span>DCERP Defense Coastal/Estuarine Research Program Workshop Proceedings</span></a></p> <p><a target="_blank" href="http://www.dtic.mil/">DTIC Science & Technology</a></p> <p></p> <p>2005-02-01</p> <p>indicators, both in terms of ecological health and human impacts. • Phytoplankton and benthic microalgae species, especially bloom-forming ones that...<span class="hlt">composition</span>) Chlorophyll a and other diagnostic photopigments Phytoplankton /<span class="hlt">zooplankton</span> <span class="hlt">community</span> <span class="hlt">composition</span> Primary production (Photosynthesis...Satellite imagery for phytoplankton and higher plant <span class="hlt">communities</span> Aerial sensors for submerged aquatic vegetation, salt marshes, ocean color 22 IR</p> </li> <li> <p><a target="_blank" onclick="trackOutboundLink('https://www.ncbi.nlm.nih.gov/pubmed/24634724','PUBMED'); return false;" href="https://www.ncbi.nlm.nih.gov/pubmed/24634724"><span>Timing is everything: priority effects alter <span class="hlt">community</span> invasibility after disturbance.</span></a></p> <p><a target="_blank" href="https://www.ncbi.nlm.nih.gov/entrez/query.fcgi?DB=pubmed">PubMed</a></p> <p>Symons, Celia C; Arnott, Shelley E</p> <p>2014-02-01</p> <p>Theory suggests that <span class="hlt">communities</span> should be more open to the establishment of regional species following disturbance because disturbance may make more resources available to dispersers. However, after an initial period of high invasibility, growth of the resident <span class="hlt">community</span> may lead to the monopolization of local resources and decreased probability of successful colonist establishment. During press disturbances (i.e., directional environmental change), it remains unclear what effect regional dispersal will have on local <span class="hlt">community</span> structure if the establishment of later arriving species is affected by early arriving species (i.e., if priority effects are important). To determine the relationship between time-since-disturbance and invasibility, we conducted a fully factorial field mesocosm experiment that exposed tundra <span class="hlt">zooplankton</span> <span class="hlt">communities</span> to two emerging stressors - nutrient and salt addition, and manipulated the arrival timing of regional dispersers. Our results demonstrate that invasibility decreases with increasing time-since-disturbance as abundance (nutrient treatments) or species richness (salt treatments) increases in the resident <span class="hlt">community</span>. Results suggest that the relative timing of dispersal and environmental change will modify the importance of priority effects in determining species <span class="hlt">composition</span> after a press disturbance.</p> </li> <li> <p><a target="_blank" onclick="trackOutboundLink('http://adsabs.harvard.edu/abs/2016PrOce.140...69K','NASAADS'); return false;" href="http://adsabs.harvard.edu/abs/2016PrOce.140...69K"><span>Carbon and nitrogen stable isotope ratios of pelagic <span class="hlt">zooplankton</span> elucidate ecohydrographic features in the oligotrophic Red Sea</span></a></p> <p><a target="_blank" href="http://adsabs.harvard.edu/abstract_service.html">NASA Astrophysics Data System (ADS)</a></p> <p>Kürten, Benjamin; Al-Aidaroos, Ali M.; Kürten, Saskia; El-Sherbiny, Mohsen M.; Devassy, Reny P.; Struck, Ulrich; Zarokanellos, Nikolaos; Jones, Burton H.; Hansen, Thomas; Bruss, Gerd; Sommer, Ulrich</p> <p>2016-01-01</p> <p> POM in the South, and of small phytoplankton in the central Red Sea. Consistent variation across taxonomic and trophic groups at latitudinal scale, corresponding with patterns of nutrient stoichiometry and phytoplankton <span class="hlt">composition</span>, indicates that the <span class="hlt">zooplankton</span> ecology in the Red Sea is largely influenced by hydrographic features. It suggests that the primary ecohydrography of the Red Sea is driven not only by the thermohaline circulation, but also by mesoscale activities that transports nutrients to the upper water layers and interact with the general circulation pattern. Ecohydrographic features of the Red Sea, therefore, aid in explaining the observed configuration of its isoscape at the macroecological scale.</p> </li> <li> <p><a target="_blank" onclick="trackOutboundLink('http://adsabs.harvard.edu/abs/2016AGUOSME24B0709W','NASAADS'); return false;" href="http://adsabs.harvard.edu/abs/2016AGUOSME24B0709W"><span>Can small <span class="hlt">zooplankton</span> enhance turbulence in a lake during vertical migration?</span></a></p> <p><a target="_blank" href="http://adsabs.harvard.edu/abstract_service.html">NASA Astrophysics Data System (ADS)</a></p> <p>Wain, D.; Simoncelli, S.; Thackeray, S.</p> <p>2016-02-01</p> <p>Recent research in both oceanic and freshwater systems suggests that the Diel Vertical Migration (DVM), a predator-avoidance mechanism adopted by many <span class="hlt">zooplankton</span>, may be an underrepresented source of turbulence and mixing. In particular, the migration can play a crucial role when organisms cross the thermocline; this could be particularly important in enhancing the mixing in lakes, where the pelagic zone is often quiescent, with a consequent impact on lake ecosystem functioning. A field experiment was performed to directly measure the temperature fluctuations and kinetic energy dissipation rate generated by DVM of Daphnia spp., a 1 mm crustacean <span class="hlt">zooplankton</span> genus. Profiles of turbulence were acquired with a temperature microstructure profiler in Vobster Quay (UK), a small quarry with small wind fetch, steep sides, and with a maximum depth of approximately 25 m. Sixteen profiles were measured over the course of two hours during sunset on 16 July 2015, during which there was no wind. Backscatter strength from bottom-mounted ADCP was used as a proxy to assess DVM. <span class="hlt">Zooplankton</span> vertical distribution was also quantified by sampling with a 100 μm mesh net before and after the turbulence profiling in 8 layers to verify the distribution of Daphnia spp. before and after the migration. <span class="hlt">Zooplankton</span> tows show higher abundance (450 ind./L) of Daphnia at 9m and near the bottom before sunset (8PM). Samples after dusk (11.20PM) showed an increase in the surface layer, from 0 up to 250 ind./L. However, migration also appears to happen horizontally. Ensemble-averaged profiles show a great variation of the dissipation rates over the course of the time series with a peak of 10-7 W/kg between 6m and 12m where the DVM is happening and with respect to profiles before sunset. Given the uncertainty in measuring the length scales of turbulence associated with small <span class="hlt">zooplankton</span>, further analysis is required to determine if the observed turbulence during the time of migration was due the</p> </li> <li> <p><a target="_blank" onclick="trackOutboundLink('http://adsabs.harvard.edu/abs/2001PhDT.......107R','NASAADS'); return false;" href="http://adsabs.harvard.edu/abs/2001PhDT.......107R"><span>Acoustic estimates of <span class="hlt">zooplankton</span> and micronekton biomass in cyclones and anticyclones of the northeastern Gulf of Mexico</span></a></p> <p><a target="_blank" href="http://adsabs.harvard.edu/abstract_service.html">NASA Astrophysics Data System (ADS)</a></p> <p>Ressler, Patrick Henry</p> <p>2001-12-01</p> <p>In the Gulf of Mexico (GOM), coarse to mesoscale eddies can enhance the supply of limiting nutrients into the euphotic zone, elevating primary production. This leads to 'oases' of enriched standing stocks of <span class="hlt">zooplankton</span> and micronekton in otherwise oligotrophic deepwater (>200 m bottom depth). A combination of acoustic volume backscattering (Sv) measurements with an acoustic Doppler current profiler (ADCP) and concurrent net sampling of <span class="hlt">zooplankton</span> and micronekton biomass in GOM eddy fields between October 1996 and November 1998 confirmed that cyclones and flow confluences were areas of locally enhanced Sv and standing stock biomass. Net samples were used both to 'sea-truth' the acoustic measurements and to assess the influence of taxonomic <span class="hlt">composition</span> on measured Sv. During October 1996 and August 1997, a mesoscale (200--300 km diameter) cyclone-anticyclone pair in the northeastern GOM was surveyed as part of a cetacean (whale and dolphin) and seabird habitat, study. Acoustic estimates of biomass in the upper 10--50 m of the water column showed that the cyclone and flow confluence were enriched relative to anticyclonic Loop Current Eddies during both years. Cetacean and seabird survey results reported by other project researchers imply that these eddies provide preferential habitat because they foster locally higher concentrations of higher-trophic-level prey. Sv measurements in November 1997 and 1998 showed that coarse scale eddies (30--150 km diameter) probably enhanced nutrients and S, in the deepwater GOM within 100 km of the Mississippi delta, an area suspected to be important habitat for cetaceans and seabirds. Finally, Sv, data collected during November-December 1997 and October-December 1998 from a mooring at the head of DeSoto Canyon in the northeastern GOM revealed temporal variability at a single location: characteristic temporal decorrelation scales were 1 day (diel vertical migration of <span class="hlt">zooplankton</span> and micronekton) and 5 days (advective processes). A</p> </li> <li> <p><a target="_blank" onclick="trackOutboundLink('https://www.pubmedcentral.nih.gov/articlerender.fcgi?tool=pmcentrez&artid=5450036','PMC'); return false;" href="https://www.pubmedcentral.nih.gov/articlerender.fcgi?tool=pmcentrez&artid=5450036"><span>You Are What You Eat: A Genomic Analysis of the Gut Microbiome of Captive and Wild Octopus vulgaris Paralarvae and Their <span class="hlt">Zooplankton</span> Prey</span></a></p> <p><a target="_blank" href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?DB=pmc">PubMed Central</a></p> <p>Roura, Álvaro; Doyle, Stephen R.; Nande, Manuel; Strugnell, Jan M.</p> <p>2017-01-01</p> <p>The common octopus (Octopus vulgaris) is an attractive species for aquaculture, however, several challenges inhibit sustainable commercial production. Little is known about the early paralarval stages in the wild, including diet and intestinal microbiota, which likely play a significant role in development and vitality of this important life stage. High throughput sequencing was used to characterize the gastrointestinal microbiome of wild O. vulgaris paralarvae collected from two different upwelling regions off the coast of North West Spain (n = 41) and Morocco (n = 35). These were compared to that of paralarvae reared with Artemia for up to 25 days in captivity (n = 29). In addition, the gastrointestinal microbiome of <span class="hlt">zooplankton</span> prey (crabs, copepod and krill) was also analyzed to determine if the microbial <span class="hlt">communities</span> present in wild paralarvae are derived from their diet. Paralarvae reared in captivity with Artemia showed a depletion of bacterial diversity, particularly after day 5, when almost half the bacterial species present on day 0 were lost and two bacterial families (Mycoplasmataceae and Vibrionaceae) dominated the microbial <span class="hlt">community</span>. In contrast, bacterial diversity increased in wild paralarvae as they developed in the oceanic realm of both upwelling systems, likely due to the exposure of new bacterial <span class="hlt">communities</span> via ingestion of a wide diversity of prey. Remarkably, the bacterial diversity of recently hatched paralarvae in captivity was similar to that of wild paralarvae and <span class="hlt">zooplankton</span>, thus suggesting a marked effect of the diet in both the microbial <span class="hlt">community</span> species diversity and evenness. This study provides a comprehensive overview of the bacterial <span class="hlt">communities</span> inhabiting the gastrointestinal tract of O. vulgaris paralarvae, and reveals new research lines to challenge the current bottlenecks preventing sustainable octopus aquaculture. PMID:28620315</p> </li> <li> <p><a target="_blank" onclick="trackOutboundLink('https://www.ncbi.nlm.nih.gov/pubmed/28620315','PUBMED'); return false;" href="https://www.ncbi.nlm.nih.gov/pubmed/28620315"><span>You Are What You Eat: A Genomic Analysis of the Gut Microbiome of Captive and Wild Octopus vulgaris Paralarvae and Their <span class="hlt">Zooplankton</span> Prey.</span></a></p> <p><a target="_blank" href="https://www.ncbi.nlm.nih.gov/entrez/query.fcgi?DB=pubmed">PubMed</a></p> <p>Roura, Álvaro; Doyle, Stephen R; Nande, Manuel; Strugnell, Jan M</p> <p>2017-01-01</p> <p>The common octopus ( Octopus vulgaris ) is an attractive species for aquaculture, however, several challenges inhibit sustainable commercial production. Little is known about the early paralarval stages in the wild, including diet and intestinal microbiota, which likely play a significant role in development and vitality of this important life stage. High throughput sequencing was used to characterize the gastrointestinal microbiome of wild O. vulgaris paralarvae collected from two different upwelling regions off the coast of North West Spain ( n = 41) and Morocco ( n = 35). These were compared to that of paralarvae reared with Artemia for up to 25 days in captivity ( n = 29). In addition, the gastrointestinal microbiome of <span class="hlt">zooplankton</span> prey (crabs, copepod and krill) was also analyzed to determine if the microbial <span class="hlt">communities</span> present in wild paralarvae are derived from their diet. Paralarvae reared in captivity with Artemia showed a depletion of bacterial diversity, particularly after day 5, when almost half the bacterial species present on day 0 were lost and two bacterial families (Mycoplasmataceae and Vibrionaceae) dominated the microbial <span class="hlt">community</span>. In contrast, bacterial diversity increased in wild paralarvae as they developed in the oceanic realm of both upwelling systems, likely due to the exposure of new bacterial <span class="hlt">communities</span> via ingestion of a wide diversity of prey. Remarkably, the bacterial diversity of recently hatched paralarvae in captivity was similar to that of wild paralarvae and <span class="hlt">zooplankton</span>, thus suggesting a marked effect of the diet in both the microbial <span class="hlt">community</span> species diversity and evenness. This study provides a comprehensive overview of the bacterial <span class="hlt">communities</span> inhabiting the gastrointestinal tract of O. vulgaris paralarvae, and reveals new research lines to challenge the current bottlenecks preventing sustainable octopus aquaculture.</p> </li> <li> <p><a target="_blank" onclick="trackOutboundLink('http://adsabs.harvard.edu/abs/2004DSRII..51.2041L','NASAADS'); return false;" href="http://adsabs.harvard.edu/abs/2004DSRII..51.2041L"><span>Acoustically-inferred <span class="hlt">zooplankton</span> distribution in relation to hydrography west of the Antarctic Peninsula</span></a></p> <p><a target="_blank" href="http://adsabs.harvard.edu/abstract_service.html">NASA Astrophysics Data System (ADS)</a></p> <p>Lawson, Gareth L.; Wiebe, Peter H.; Ashjian, Carin J.; Gallager, Scott M.; Davis, Cabell S.; Warren, Joseph D.</p> <p>2004-08-01</p> <p>The relationship between the distribution of <span class="hlt">zooplankton</span>, especially euphausiids ( Euphausia and Thysanoessa spp.), and hydrographic regimes of the Western Antarctic Peninsula continental shelf in and around Marguerite Bay was studied as part of the Southern Ocean GLOBEC program. Surveys were conducted from the RVIB N.B. Palmer in austral fall (April-June) and winter (July-August) of 2001. Acoustic, video, and environmental data were collected along 13 transect lines running across the shelf and perpendicular to the Western Antarctic Peninsula coastline, between 65°S and 70°S. Depth-stratified net tows conducted at selected locations provided ground-truthing for acoustic observations. In fall, acoustic volume backscattering strength at 120 kHz was greatest in the southern reaches of the survey area and inside Marguerite Bay, suggestive of high <span class="hlt">zooplankton</span> and micronekton biomass in these regions. Vertically, highest backscattering was in the 150-450 m depth range, associated with modified Circumpolar Deep Water (CDW). The two deep troughs that intersect the shelf break were characterized by reduced backscattering, similar to levels observed off-shelf and indicative of lower <span class="hlt">zooplankton</span> biomass in recent intrusions of CDW onto the continental shelf. Estimates of dynamic height suggested that geostrophic circulation likely caused both along- and across-shelf transport of <span class="hlt">zooplankton</span>. By winter, scattering had decreased by an order of magnitude (10 dB) in the upper 300 m of the water column in most areas, and high backscattering levels were found primarily in a deep (>300 m) scattering layer present close to the bottom. The seasonal decrease is potentially explained by advection of <span class="hlt">zooplankton</span>, vertical and horizontal movements, and mortality. Predictions of expected backscattering levels based on net samples suggested that large euphausiids were the dominant source of backscattering only at very particular locations and depths, and that copepods, siphonophores, and</p> </li> <li> <p><a target="_blank" onclick="trackOutboundLink('http://adsabs.harvard.edu/abs/2011DSRII..58..699B','NASAADS'); return false;" href="http://adsabs.harvard.edu/abs/2011DSRII..58..699B"><span>Analysis of southeast Australian <span class="hlt">zooplankton</span> observations of 1938-42 using synoptic oceanographic conditions</span></a></p> <p><a target="_blank" href="http://adsabs.harvard.edu/abstract_service.html">NASA Astrophysics Data System (ADS)</a></p> <p>Baird, Mark E.; Everett, Jason D.; Suthers, Iain M.</p> <p>2011-03-01</p> <p>The research vessel Warreen obtained 1742 planktonic samples along the continental shelf and slope of southeast Australia from 1938-42, representing the earliest spatially and temporally resolved <span class="hlt">zooplankton</span> data from Australian marine waters. In this paper, Warreen observations along the southeast Australian seaboard from 28°S to 38°S are interpreted based on synoptic meteorological and oceanographic conditions and ocean climatologies. Meteorological conditions are based on the NOAA-CIRES 20th Century Reanalysis Project; oceanographic conditions use Warreen hydrological observations, and the ocean climatology is the CSIRO Atlas of Regional Seas. The Warreen observations were undertaken in waters on average 0.45 °C cooler than the climatological average, and included the longest duration El Niño of the 20th century. In northern New South Wales (NSW), week time-scale events dominate <span class="hlt">zooplankton</span> response. In August 1940 an unusual winter upwelling event occurred in northern NSW driven by a stronger than average East Australian Current (EAC) and anomalous northerly winds that resulted in high salp and larvacean abundance. In January 1941 a strong upwelling event between 28° and 33°S resulted in a filament of upwelled water being advected south and alongshore, which was low in <span class="hlt">zooplankton</span> biovolume. In southern NSW a seasonal cycle in physical and planktonic characteristics is observed. In January 1941 the poleward extension of the EAC was strong, advecting more tropical tunicate species southward. <span class="hlt">Zooplankton</span> abundance and distribution on the continental shelf and slope are more dependent on weekly to monthly timescales on local oceanographic and meteorological conditions than continental-scale interannual trends. The interpretation of historical <span class="hlt">zooplankton</span> observations of the waters off southeast Australia for the purpose of quantifying anthropogenic impacts will be improved with the use of regional hindcasts of synoptic ocean and atmospheric weather that can</p> </li> <li> <p><a target="_blank" onclick="trackOutboundLink('https://www.ncbi.nlm.nih.gov/pubmed/28299569','PUBMED'); return false;" href="https://www.ncbi.nlm.nih.gov/pubmed/28299569"><span>Biodiversity effects on resource use efficiency and <span class="hlt">community</span> turnover of plankton in Lake Nansihu, China.</span></a></p> <p><a target="_blank" href="https://www.ncbi.nlm.nih.gov/entrez/query.fcgi?DB=pubmed">PubMed</a></p> <p>Tian, Wang; Zhang, Huayong; Zhang, Jian; Zhao, Lei; Miao, Mingsheng; Huang, Hai</p> <p>2017-04-01</p> <p>The relationship between biodiversity and ecosystem functioning is a central issue in ecology, especially in aquatic ecosystems due to the ecophysiological characteristics of plankton. Recently, ecologists have obtained conflicting conclusions while analyzing the influence of species diversity on plankton resource use efficiency (RUE) and <span class="hlt">community</span> turnover. In this study, both phytoplankton and <span class="hlt">zooplankton</span> <span class="hlt">communities</span> were investigated seasonally from 2011 to 2013 in Lake Nansihu, a meso-eutrophic and recovering lake in China. The effects of phytoplankton diversity on RUE of phytoplankton (RUE PP ), <span class="hlt">zooplankton</span> (RUE ZP ), and <span class="hlt">community</span> turnover were analyzed. Results showed that both phytoplankton species richness and evenness were positively correlated with RUE PP . RUE ZP had a negative relationship with phytoplankton species richness, but a weak unimodal relationship with phytoplankton evenness. Cyanobacteria <span class="hlt">community</span> had the opposite influence on RUE PP and RUE ZP . Thus, cyanobacteria dominance will benefit RUE PP in eutrophic lakes, but the growth and reproduction of <span class="hlt">zooplankton</span> are greatly limited. The strong negative relationship between total phosphorus and RUE ZP confirmed these results. Phytoplankton <span class="hlt">community</span> turnover tended to decrease with increasing phytoplankton evenness, which was consistent with most previous studies. The correlation coefficient between phytoplankton species richness and <span class="hlt">community</span> turnover was negative, but not significant (p > 0.05). Therefore, phytoplankton <span class="hlt">community</span> turnover was more sensitive to the variation of evenness than species richness. These results will be helpful in understanding the effects of species diversity on ecosystem functioning in aquatic ecosystems.</p> </li> <li> <p><a target="_blank" onclick="trackOutboundLink('https://www.ncbi.nlm.nih.gov/pubmed/25728488','PUBMED'); return false;" href="https://www.ncbi.nlm.nih.gov/pubmed/25728488"><span>The <span class="hlt">community</span> ecology of pathogens: coinfection, coexistence and <span class="hlt">community</span> <span class="hlt">composition</span>.</span></a></p> <p><a target="_blank" href="https://www.ncbi.nlm.nih.gov/entrez/query.fcgi?DB=pubmed">PubMed</a></p> <p>Seabloom, Eric W; Borer, Elizabeth T; Gross, Kevin; Kendig, Amy E; Lacroix, Christelle; Mitchell, Charles E; Mordecai, Erin A; Power, Alison G</p> <p>2015-04-01</p> <p>Disease and <span class="hlt">community</span> ecology share conceptual and theoretical lineages, and there has been a resurgence of interest in strengthening links between these fields. Building on recent syntheses focused on the effects of host <span class="hlt">community</span> <span class="hlt">composition</span> on single pathogen systems, we examine pathogen (microparasite) <span class="hlt">communities</span> using a stochastic metacommunity model as a starting point to bridge <span class="hlt">community</span> and disease ecology perspectives. Such models incorporate the effects of core <span class="hlt">community</span> processes, such as ecological drift, selection and dispersal, but have not been extended to incorporate host-pathogen interactions, such as immunosuppression or synergistic mortality, that are central to disease ecology. We use a two-pathogen susceptible-infected (SI) model to fill these gaps in the metacommunity approach; however, SI models can be intractable for examining species-diverse, spatially structured systems. By placing disease into a framework developed for <span class="hlt">community</span> ecology, our synthesis highlights areas ripe for progress, including a theoretical framework that incorporates host dynamics, spatial structuring and evolutionary processes, as well as the data needed to test the predictions of such a model. Our synthesis points the way for this framework and demonstrates that a deeper understanding of pathogen <span class="hlt">community</span> dynamics will emerge from approaches working at the interface of disease and <span class="hlt">community</span> ecology. © 2015 John Wiley & Sons Ltd/CNRS.</p> </li> <li> <p><a target="_blank" onclick="trackOutboundLink('https://www.ncbi.nlm.nih.gov/pubmed/28866399','PUBMED'); return false;" href="https://www.ncbi.nlm.nih.gov/pubmed/28866399"><span>Temporal variations in a phytoplankton <span class="hlt">community</span> in a subtropical reservoir: An interplay of extrinsic and intrinsic <span class="hlt">community</span> effects.</span></a></p> <p><a target="_blank" href="https://www.ncbi.nlm.nih.gov/entrez/query.fcgi?DB=pubmed">PubMed</a></p> <p>Yang, Wen; Zheng, Zhongming; Zheng, Cheng; Lu, Kaihong; Ding, Dewen; Zhu, Jinyong</p> <p>2018-01-15</p> <p>The phytoplankton <span class="hlt">community</span> structure is potentially influenced by both extrinsic effects originating from the surrounding environment and intrinsic effects relying on interspecific interactions between two species. However, few studies have simultaneously considered both types of effects and assessed the relative importance of these factors. In this study, we used data collected over nine months (August 2012-May 2013) from a typical subtropical reservoir in southeast China to analyze the temporal variation of its phytoplankton <span class="hlt">community</span> structure and develop a quantitative understanding of the extrinsic and intrinsic effects on phytoplankton <span class="hlt">community</span> dynamics. Significant temporal variations were observed in environmental variables as well as the phytoplankton and <span class="hlt">zooplankton</span> <span class="hlt">communities</span>, whereas their variational trajectories and directions were entirely different. Variance partitioning analysis showed that extrinsic factors significantly explained only 31% of the variation in the phytoplankton <span class="hlt">community</span>, thus suggesting that these factors were incomplete predictors of the <span class="hlt">community</span> structure. Random forest-based models showed that 48% of qualified responsible phytoplankton species were more accurately predicted by phytoplankton-only models, which revealed clear effects of interspecific species-to-species interactions. Furthermore, we used association networks to model the interactions among phytoplankton, <span class="hlt">zooplankton</span> and the environment. Network comparisons indicated that interspecific interactions were widely present in the phytoplankton <span class="hlt">community</span> and dominated the network rather than those between phytoplankton and extrinsic factors. These findings expand the current understanding of the underlying mechanisms that govern phytoplankton <span class="hlt">community</span> dynamics. Copyright © 2017 Elsevier B.V. All rights reserved.</p> </li> <li> <p><a target="_blank" onclick="trackOutboundLink('http://adsabs.harvard.edu/abs/2016AGUOSME41A..07B','NASAADS'); return false;" href="http://adsabs.harvard.edu/abs/2016AGUOSME41A..07B"><span>Environmental Variability and Plankton <span class="hlt">Community</span> Dynamics in the English Channel</span></a></p> <p><a target="_blank" href="http://adsabs.harvard.edu/abstract_service.html">NASA Astrophysics Data System (ADS)</a></p> <p>Barton, A.; Gonzalez, F.; Atkinson, A.; Stock, C. A.</p> <p>2016-02-01</p> <p>Temporal environmental variation plays a key role in shaping plankton <span class="hlt">community</span> structure and dynamics. In some cases, these ecological changes may be abrupt and long-lived, and constitute a significant change in overall ecosystem structure and function. The "Double Integration Hypothesis", posed recently by Di Lorenzo and Ohman to help explain these complex biophysical linkages, holds that atmospheric variability is filtered first through the ocean surface before secondarily imprinting on plankton <span class="hlt">communities</span>. In this perspective, physical properties of the surface ocean, such as sea surface temperature (SST), integrate atmospheric white noise, resulting in a time series that is smoother and has more low than high frequency variability (red noise). Secondarily, long-lived <span class="hlt">zooplankton</span> integrate over oceanographic conditions and further redden the power spectra. We test the generality of this hypothesis with extensive environmental and ecological data from the L4 station in the Western English Channel (1988-present), calculating power spectral slopes from anomaly time series for atmospheric forcing (wind stress and net heat fluxes), surface ocean conditions (SST and macronutrients), and the biomasses of well over 100 phytoplankton and <span class="hlt">zooplankton</span> taxa. As expected, we find that SST and macronutrient concentrations are redder in character than white noise atmospheric forcing. However, we find that power spectral slopes for phytoplankton and <span class="hlt">zooplankton</span> are generally not significantly less than found for oceanographic conditions. Moreover, we find a considerable range in power spectral slopes within the phytoplankton and <span class="hlt">zooplankton</span>, reflecting the diversity of body sizes, traits, life histories, and predator-prey interactions. We interpret these findings using an idealized trait-based model with a single phytoplankton prey and <span class="hlt">zooplankton</span> predator, configured to capture essential oceanographic properties at the L4 station, and discuss how changes in power spectral</p> </li> <li> <p><a target="_blank" onclick="trackOutboundLink('https://www.ncbi.nlm.nih.gov/pubmed/29531713','PUBMED'); return false;" href="https://www.ncbi.nlm.nih.gov/pubmed/29531713"><span>Improved protocols to accelerate the assembly of DNA barcode reference libraries for freshwater <span class="hlt">zooplankton</span>.</span></a></p> <p><a target="_blank" href="https://www.ncbi.nlm.nih.gov/entrez/query.fcgi?DB=pubmed">PubMed</a></p> <p>Elías-Gutiérrez, Manuel; Valdez-Moreno, Martha; Topan, Janet; Young, Monica R; Cohuo-Colli, José Angel</p> <p>2018-03-01</p> <p>Currently, freshwater <span class="hlt">zooplankton</span> sampling and identification methodologies have remained virtually unchanged since they were first established in the beginning of the XX century. One major contributing factor to this slow progress is the limited success of modern genetic methodologies, such as DNA barcoding, in several of the main groups. This study demonstrates improved protocols which enable the rapid assessment of most animal taxa inhabiting any freshwater system by combining the use of light traps, careful fixation at low temperatures using ethanol, and <span class="hlt">zooplankton</span>-specific primers. We DNA-barcoded 2,136 specimens from a diverse array of taxonomic assemblages (rotifers, mollusks, mites, crustaceans, insects, and fishes) from several Canadian and Mexican lakes with an average sequence success rate of 85.3%. In total, 325 Barcode Index Numbers (BINs) were detected with only three BINs (two cladocerans and one copepod) shared between Canada and Mexico, suggesting a much narrower distribution range of freshwater <span class="hlt">zooplankton</span> than previously thought. This study is the first to broadly explore the metazoan biodiversity of freshwater systems with DNA barcodes to construct a reference library that represents the first step for future programs which aim to monitor ecosystem health, track invasive species, or improve knowledge of the ecology and distribution of freshwater <span class="hlt">zooplankton</span>.</p> </li> <li> <p><a target="_blank" onclick="trackOutboundLink('https://pubs.er.usgs.gov/publication/1000743','USGSPUBS'); return false;" href="https://pubs.er.usgs.gov/publication/1000743"><span>Use of <span class="hlt">zooplankton</span> to assess the movement and distribution of alewife (Alosa pseudoharengus) in south-central Lake Ontario in spring</span></a></p> <p><a target="_blank" href="http://pubs.er.usgs.gov/pubs/index.jsp?view=adv">USGS Publications Warehouse</a></p> <p>O'Gorman, Robert; Mills, Edward L.; DeGisi, Joe</p> <p>1991-01-01</p> <p>Data from assessments of fish and <span class="hlt">zooplankton</span> conducted during April and May-June 1986-88 in south-central Lake Ontario were examined for evidence that <span class="hlt">zooplankton</span> size structure can be used to follow the movement of alewife (Alosa pseudoharengus). The spring influx of alewife into nearshore waters was linked with water temperature and coincided with a decline in the mean length of crustacean <span class="hlt">zooplankton</span> and the virtual disappearance of zooplankters a?Y 0.9 mm. Alewife moving inshore to spawn fed heavily on the largest zooplankters, negating the possibility that changes in <span class="hlt">zooplankton</span> size were wholly a response to seasonal recruitment as waters warm and the competition shifts to Bosmina. Offshore, there was usually no significant (P < 0.05) change in mean lengths of <span class="hlt">zooplankton</span> in the upper water column between April and May-June, and zooplankters a?Y 0.9 mm always remained abundant, suggesting that few alewife were there from April through mid-June. We conclude that in large freshwater lakes where a planktivore is abundant, yet spatially concentrated, changes in size of crustacean <span class="hlt">zooplankton</span> can facilitate understanding of the fish's movement and distribution.</p> </li> <li> <p><a target="_blank" onclick="trackOutboundLink('https://www.ncbi.nlm.nih.gov/pubmed/18685872','PUBMED'); return false;" href="https://www.ncbi.nlm.nih.gov/pubmed/18685872"><span>Neighboring trees affect ectomycorrhizal fungal <span class="hlt">community</span> <span class="hlt">composition</span> in a woodland-forest ecotone.</span></a></p> <p><a target="_blank" href="https://www.ncbi.nlm.nih.gov/entrez/query.fcgi?DB=pubmed">PubMed</a></p> <p>Hubert, Nathaniel A; Gehring, Catherine A</p> <p>2008-09-01</p> <p>Ectomycorrhizal fungi (EMF) are frequently species rich and functionally diverse; yet, our knowledge of the environmental factors that influence local EMF diversity and species <span class="hlt">composition</span> remains poor. In particular, little is known about the influence of neighboring plants on EMF <span class="hlt">community</span> structure. We tested the hypothesis that the EMF of plants with heterospecific neighbors would differ in species richness and <span class="hlt">community</span> <span class="hlt">composition</span> from the EMF of plants with conspecific neighbors. We conducted our study at the ecotone between pinyon (Pinus edulis)-juniper (Juniperus monosperma) woodland and ponderosa pine (Pinus ponderosa) forest in northern Arizona, USA where the dominant trees formed associations with either EMF (P. edulis and P. ponderosa) or arbuscular mycorrhizal fungi (AMF; J. monosperma). We also compared the EMF <span class="hlt">communities</span> of pinyon and ponderosa pines where their rhizospheres overlapped. The EMF <span class="hlt">community</span> <span class="hlt">composition</span>, but not species richness of pinyon pines was significantly influenced by neighboring AM juniper, but not by neighboring EM ponderosa pine. Ponderosa pine EMF <span class="hlt">communities</span> were different in species <span class="hlt">composition</span> when growing in association with pinyon pine than when growing in association with a conspecific. The EMF <span class="hlt">communities</span> of pinyon and ponderosa pines were similar where their rhizospheres overlapped consisting of primarily the same species in similar relative abundance. Our findings suggest that neighboring tree species identity shaped EMF <span class="hlt">community</span> structure, but that these effects were specific to host-neighbor combinations. The overlap in <span class="hlt">community</span> <span class="hlt">composition</span> between pinyon pine and ponderosa pine suggests that these tree species may serve as reservoirs of EMF inoculum for one another.</p> </li> <li> <p><a target="_blank" onclick="trackOutboundLink('http://adsabs.harvard.edu/abs/2010DSRII..57.2234B','NASAADS'); return false;" href="http://adsabs.harvard.edu/abs/2010DSRII..57.2234B"><span>A “Rosetta Stone” for metazoan <span class="hlt">zooplankton</span>: DNA barcode analysis of species diversity of the Sargasso Sea (Northwest Atlantic Ocean)</span></a></p> <p><a target="_blank" href="http://adsabs.harvard.edu/abstract_service.html">NASA Astrophysics Data System (ADS)</a></p> <p>Bucklin, Ann; Ortman, Brian D.; Jennings, Robert M.; Nigro, Lisa M.; Sweetman, Christopher J.; Copley, Nancy J.; Sutton, Tracey; Wiebe, Peter H.</p> <p>2010-12-01</p> <p>Species diversity of the metazoan holozooplankton assemblage of the Sargasso Sea, Northwest Atlantic Ocean, was examined through coordinated morphological taxonomic identification of species and DNA sequencing of a ˜650 base-pair region of mitochondrial cytochrome oxidase I (mtCOI) as a DNA barcode (i.e., short sequence for species recognition and discrimination). <span class="hlt">Zooplankton</span> collections were made from the surface to 5,000 meters during April, 2006 on the R/V R.H. Brown. Samples were examined by a ship-board team of morphological taxonomists; DNA barcoding was carried out in both ship-board and land-based DNA sequencing laboratories. DNA barcodes were determined for a total of 297 individuals of 175 holozooplankton species in four phyla, including: Cnidaria (Hydromedusae, 4 species; Siphonophora, 47); Arthropoda (Amphipoda, 10; Copepoda, 34; Decapoda, 9; Euphausiacea, 10; Mysidacea, 1; Ostracoda, 27); and Mollusca (Cephalopoda, 8; Heteropoda, 6; Pteropoda, 15); and Chaetognatha (4). Thirty species of fish (Teleostei) were also barcoded. For all seven <span class="hlt">zooplankton</span> groups for which sufficient data were available, Kimura-2-Parameter genetic distances were significantly lower between individuals of the same species (mean=0.0114; S.D. 0.0117) than between individuals of different species within the same group (mean=0.3166; S.D. 0.0378). This difference, known as the barcode gap, ensures that mtCOI sequences are reliable characters for species identification for the oceanic holozooplankton assemblage. In addition, DNA barcodes allow recognition of new or undescribed species, reveal cryptic species within known taxa, and inform phylogeographic and population genetic studies of geographic variation. The growing database of "gold standard" DNA barcodes serves as a Rosetta Stone for marine <span class="hlt">zooplankton</span>, providing the key for decoding species diversity by linking species names, morphology, and DNA sequence variation. In light of the pivotal position of <span class="hlt">zooplankton</span> in ocean</p> </li> <li> <p><a target="_blank" onclick="trackOutboundLink('https://www.ncbi.nlm.nih.gov/pubmed/26430855','PUBMED'); return false;" href="https://www.ncbi.nlm.nih.gov/pubmed/26430855"><span>Bacterial diversity and <span class="hlt">community</span> <span class="hlt">composition</span> from seasurface to subseafloor.</span></a></p> <p><a target="_blank" href="https://www.ncbi.nlm.nih.gov/entrez/query.fcgi?DB=pubmed">PubMed</a></p> <p>Walsh, Emily A; Kirkpatrick, John B; Rutherford, Scott D; Smith, David C; Sogin, Mitchell; D'Hondt, Steven</p> <p>2016-04-01</p> <p>We investigated <span class="hlt">compositional</span> relationships between bacterial <span class="hlt">communities</span> in the water column and those in deep-sea sediment at three environmentally distinct Pacific sites (two in the Equatorial Pacific and one in the North Pacific Gyre). Through pyrosequencing of the v4-v6 hypervariable regions of the 16S ribosomal RNA gene, we characterized 450,104 pyrotags representing 29,814 operational taxonomic units (OTUs, 97% similarity). Hierarchical clustering and non-metric multidimensional scaling partition the samples into four broad groups, regardless of geographic location: a photic-zone <span class="hlt">community</span>, a subphotic <span class="hlt">community</span>, a shallow sedimentary <span class="hlt">community</span> and a subseafloor sedimentary <span class="hlt">community</span> (⩾1.5 meters below seafloor). Abundance-weighted <span class="hlt">community</span> <span class="hlt">compositions</span> of water-column samples exhibit a similar trend with depth at all sites, with successive epipelagic, mesopelagic, bathypelagic and abyssopelagic <span class="hlt">communities</span>. Taxonomic richness is generally highest in the water-column O2 minimum zone and lowest in the subseafloor sediment. OTUs represented by abundant tags in the subseafloor sediment are often present but represented by few tags in the water column, and represented by moderately abundant tags in the shallow sediment. In contrast, OTUs represented by abundant tags in the water are generally absent from the subseafloor sediment. These results are consistent with (i) dispersal of marine sedimentary bacteria via the ocean, and (ii) selection of the subseafloor sedimentary <span class="hlt">community</span> from within the <span class="hlt">community</span> present in shallow sediment.</p> </li> <li> <p><a target="_blank" onclick="trackOutboundLink('https://www.ncbi.nlm.nih.gov/pubmed/26039073','PUBMED'); return false;" href="https://www.ncbi.nlm.nih.gov/pubmed/26039073"><span>Effects of climate change on plant population growth rate and <span class="hlt">community</span> <span class="hlt">composition</span> change.</span></a></p> <p><a target="_blank" href="https://www.ncbi.nlm.nih.gov/entrez/query.fcgi?DB=pubmed">PubMed</a></p> <p>Chang, Xiao-Yu; Chen, Bao-Ming; Liu, Gang; Zhou, Ting; Jia, Xiao-Rong; Peng, Shao-Lin</p> <p>2015-01-01</p> <p>The impacts of climate change on forest <span class="hlt">community</span> <span class="hlt">composition</span> are still not well known. Although directional trends in climate change and <span class="hlt">community</span> <span class="hlt">composition</span> change were reported in recent years, further quantitative analyses are urgently needed. Previous studies focused on measuring population growth rates in a single time period, neglecting the development of the populations. Here we aimed to compose a method for calculating the <span class="hlt">community</span> <span class="hlt">composition</span> change, and to testify the impacts of climate change on <span class="hlt">community</span> <span class="hlt">composition</span> change within a relatively short period (several decades) based on long-term monitoring data from two plots-Dinghushan Biosphere Reserve, China (DBR) and Barro Colorado Island, Panama (BCI)-that are located in tropical and subtropical regions. We proposed a relatively more concise index, Slnλ, which refers to an overall population growth rate based on the dominant species in a <span class="hlt">community</span>. The results indicated that the population growth rate of a majority of populations has decreased over the past few decades. This decrease was mainly caused by population development. The increasing temperature had a positive effect on population growth rates and <span class="hlt">community</span> change rates. Our results promote understanding and explaining variations in population growth rates and <span class="hlt">community</span> <span class="hlt">composition</span> rates, and are helpful to predict population dynamics and population responses to climate change.</p> </li> </ol> <div class="pull-right"> <ul class="pagination"> <li><a href="#" onclick='return showDiv("page_1");'>«</a></li> <li><a href="#" onclick='return showDiv("page_14");'>14</a></li> <li><a href="#" onclick='return showDiv("page_15");'>15</a></li> <li class="active"><span>16</span></li> <li><a href="#" onclick='return showDiv("page_17");'>17</a></li> <li><a href="#" onclick='return showDiv("page_18");'>18</a></li> <li><a href="#" onclick='return showDiv("page_25");'>»</a></li> </ul> </div> </div><!-- col-sm-12 --> </div><!-- row --> </div><!-- page_16 --> <div id="page_17" class="hiddenDiv"> <div class="row"> <div class="col-sm-12"> <div class="pull-right"> <ul class="pagination"> <li><a href="#" onclick='return showDiv("page_1");'>«</a></li> <li><a href="#" onclick='return showDiv("page_15");'>15</a></li> <li><a href="#" onclick='return showDiv("page_16");'>16</a></li> <li class="active"><span>17</span></li> <li><a href="#" onclick='return showDiv("page_18");'>18</a></li> <li><a href="#" onclick='return showDiv("page_19");'>19</a></li> <li><a href="#" onclick='return showDiv("page_25");'>»</a></li> </ul> </div> </div> </div> <div class="row"> <div class="col-sm-12"> <ol class="result-class" start="321"> <li> <p><a target="_blank" onclick="trackOutboundLink('https://www.pubmedcentral.nih.gov/articlerender.fcgi?tool=pmcentrez&artid=5191104','PMC'); return false;" href="https://www.pubmedcentral.nih.gov/articlerender.fcgi?tool=pmcentrez&artid=5191104"><span>Looking inside the Ocean: Toward an Autonomous Imaging System for Monitoring Gelatinous <span class="hlt">Zooplankton</span></span></a></p> <p><a target="_blank" href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?DB=pmc">PubMed Central</a></p> <p>Corgnati, Lorenzo; Marini, Simone; Mazzei, Luca; Ottaviani, Ennio; Aliani, Stefano; Conversi, Alessandra; Griffa, Annalisa</p> <p>2016-01-01</p> <p>Marine plankton abundance and dynamics in the open and interior ocean is still an unknown field. The knowledge of gelatinous <span class="hlt">zooplankton</span> distribution is especially challenging, because this type of plankton has a very fragile structure and cannot be directly sampled using traditional net based techniques. To overcome this shortcoming, Computer Vision techniques can be successfully used for the automatic monitoring of this group.This paper presents the GUARD1 imaging system, a low-cost stand-alone instrument for underwater image acquisition and recognition of gelatinous <span class="hlt">zooplankton</span>, and discusses the performance of three different methodologies, Tikhonov Regularization, Support Vector Machines and Genetic Programming, that have been compared in order to select the one to be run onboard the system for the automatic recognition of gelatinous <span class="hlt">zooplankton</span>. The performance comparison results highlight the high accuracy of the three methods in gelatinous <span class="hlt">zooplankton</span> identification, showing their good capability in robustly selecting relevant features. In particular, Genetic Programming technique achieves the same performances of the other two methods by using a smaller set of features, thus being the most efficient in avoiding computationally consuming preprocessing stages, that is a crucial requirement for running on an autonomous imaging system designed for long lasting deployments, like the GUARD1. The Genetic Programming algorithm has been installed onboard the system, that has been operationally tested in a two-months survey in the Ligurian Sea, providing satisfactory results in terms of monitoring and recognition performances. PMID:27983638</p> </li> <li> <p><a target="_blank" onclick="trackOutboundLink('https://www.ncbi.nlm.nih.gov/pubmed/26232092','PUBMED'); return false;" href="https://www.ncbi.nlm.nih.gov/pubmed/26232092"><span>Predator evasion in <span class="hlt">zooplankton</span> is suppressed by polyunsaturated fatty acid limitation.</span></a></p> <p><a target="_blank" href="https://www.ncbi.nlm.nih.gov/entrez/query.fcgi?DB=pubmed">PubMed</a></p> <p>Brzeziński, Tomasz; von Elert, Eric</p> <p>2015-11-01</p> <p>Herbivorous <span class="hlt">zooplankton</span> avoid size-selective predation by vertical migration to a deep, cold water refuge. Adaptation to low temperatures in planktonic poikilotherms depends on essential dietary lipids; the availability of these lipids often limits growth and reproduction of <span class="hlt">zooplankton</span>. We hypothesized that limitation by essential lipids may affect habitat preferences and predator avoidance behavior in planktonic poikilotherms. We used a liposome supplementation technique to enrich the green alga Scenedesmus obliquus and the cyanobacterium Synecchococcus elongatus with the essential lipids, cholesterol and eicosapentaenoic acid (EPA), and an indoor system with a stratified water-column (plankton organ) to test whether the absence of these selected dietary lipids constrains predator avoidance (habitat preferences) in four species of the key-stone pelagic freshwater grazer Daphnia. We found that the capability of avoiding fish predation through habitat shift to the deeper and colder environment was suppressed in Daphnia unless the diet was supplemented with EPA; however, the availability of cholesterol did not affect habitat preferences of the tested taxa. Thus, their ability to access a predator-free refuge and the outcome of predator-prey interactions depends upon food quality (i.e. the availability of an essential fatty acid). Our results suggest that biochemical food quality limitation, a bottom-up factor, may affect the top-down control of herbivorous <span class="hlt">zooplankton</span>.</p> </li> <li> <p><a target="_blank" onclick="trackOutboundLink('https://www.ncbi.nlm.nih.gov/pubmed/27353240','PUBMED'); return false;" href="https://www.ncbi.nlm.nih.gov/pubmed/27353240"><span>Possible association of diazotrophs with marine <span class="hlt">zooplankton</span> in the Pacific Ocean.</span></a></p> <p><a target="_blank" href="https://www.ncbi.nlm.nih.gov/entrez/query.fcgi?DB=pubmed">PubMed</a></p> <p>Azimuddin, Kazi Md; Hirai, Junya; Suzuki, Shotaro; Haider, Md Nurul; Tachibana, Aiko; Watanabe, Keigo; Kitamura, Minoru; Hashihama, Fuminori; Takahashi, Kazutaka; Hamasaki, Koji</p> <p>2016-12-01</p> <p>Dinitrogen fixation, the biological reduction in N 2 gas to ammonia contributes to the supply of new nitrogen in the surface ocean. To understand the diversity and abundance of potentially diazotrophic (N 2 fixing) microorganisms associated with marine <span class="hlt">zooplankton</span>, especially copepods, the nifH gene was studied using <span class="hlt">zooplankton</span> samples collected in the Pacific Ocean. In total, 257 nifH sequences were recovered from 23 nifH-positive DNA extracts out of 90 copepod samples. The nifH genes derived from cyanobacteria related to Trichodesmium, α- and γ-subdivisions of proteobacteria, and anaerobic euryarchaeota related to Methanosaeta concilii were detected. Our results indicated that Pleuromamma, Pontella, and Euchaeta were the major copepod genera hosting dinitrogen fixers, though we found no species-specific association between copepods and dinitrogen fixers. Also, the digital PCR provided novel data on the number of copies of the nifH gene in individual copepods, which we report the range from 30 to 1666 copies per copepod. This study is the first systematic study of <span class="hlt">zooplankton</span>-associated diazotrophs, covering a large area of the open ocean, which provide a clue to further study of a possible new hotspot of N 2 fixation. © 2016 The Authors. MicrobiologyOpen published by John Wiley & Sons Ltd.</p> </li> <li> <p><a target="_blank" onclick="trackOutboundLink('https://www.pubmedcentral.nih.gov/articlerender.fcgi?tool=pmcentrez&artid=3391295','PMC'); return false;" href="https://www.pubmedcentral.nih.gov/articlerender.fcgi?tool=pmcentrez&artid=3391295"><span>Strong Spatial Influence on Colonization Rates in a Pioneer <span class="hlt">Zooplankton</span> Metacommunity</span></a></p> <p><a target="_blank" href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?DB=pmc">PubMed Central</a></p> <p>Frisch, Dagmar; Cottenie, Karl; Badosa, Anna; Green, Andy J.</p> <p>2012-01-01</p> <p>The magnitude of <span class="hlt">community</span>-wide dispersal is central to metacommunity models, yet dispersal is notoriously difficult to quantify in passive and cryptic dispersers such as many freshwater invertebrates. By overcoming the problem of quantifying dispersal rates, colonization rates into new habitats can provide a useful estimate of the magnitude of effective dispersal. Here we study the influence of spatial and local processes on colonization rates into new ponds that indicate differential dispersal limitation of major <span class="hlt">zooplankton</span> taxa, with important implications for metacommunity dynamics. We identify regional and local factors that affect <span class="hlt">zooplankton</span> colonization rates and spatial patterns in a large-scale experimental system. Our study differs from others in the unique setup of the experimental pond area by which we were able to test spatial and environmental variables at a large spatial scale. We quantified colonization rates separately for the Copepoda, Cladocera and Rotifera from samples collected over a period of 21 months in 48 newly constructed temporary ponds of 0.18–2.95 ha distributed in a restored wetland area of 2,700 ha in Doñana National Park, Southern Spain. Species richness upon initial sampling of new ponds was about one third of that in reference ponds, although the rate of detection of new species from thereon were not significantly different, probably owing to high turnover in the dynamic, temporary reference ponds. Environmental heterogeneity had no detectable effect on colonization rates in new ponds. In contrast, connectivity, space (based on latitude and longitude) and surface area were key determinants of colonization rates for copepods and cladocerans. This suggests dispersal limitation in cladocerans and copepods, but not in rotifers, possibly due to differences in propagule size and abundance. PMID:22792241</p> </li> <li> <p><a target="_blank" onclick="trackOutboundLink('https://www.ncbi.nlm.nih.gov/pubmed/22792241','PUBMED'); return false;" href="https://www.ncbi.nlm.nih.gov/pubmed/22792241"><span>Strong spatial influence on colonization rates in a pioneer <span class="hlt">zooplankton</span> metacommunity.</span></a></p> <p><a target="_blank" href="https://www.ncbi.nlm.nih.gov/entrez/query.fcgi?DB=pubmed">PubMed</a></p> <p>Frisch, Dagmar; Cottenie, Karl; Badosa, Anna; Green, Andy J</p> <p>2012-01-01</p> <p>The magnitude of <span class="hlt">community</span>-wide dispersal is central to metacommunity models, yet dispersal is notoriously difficult to quantify in passive and cryptic dispersers such as many freshwater invertebrates. By overcoming the problem of quantifying dispersal rates, colonization rates into new habitats can provide a useful estimate of the magnitude of effective dispersal. Here we study the influence of spatial and local processes on colonization rates into new ponds that indicate differential dispersal limitation of major <span class="hlt">zooplankton</span> taxa, with important implications for metacommunity dynamics. We identify regional and local factors that affect <span class="hlt">zooplankton</span> colonization rates and spatial patterns in a large-scale experimental system. Our study differs from others in the unique setup of the experimental pond area by which we were able to test spatial and environmental variables at a large spatial scale. We quantified colonization rates separately for the Copepoda, Cladocera and Rotifera from samples collected over a period of 21 months in 48 newly constructed temporary ponds of 0.18-2.95 ha distributed in a restored wetland area of 2,700 ha in Doñana National Park, Southern Spain. Species richness upon initial sampling of new ponds was about one third of that in reference ponds, although the rate of detection of new species from thereon were not significantly different, probably owing to high turnover in the dynamic, temporary reference ponds. Environmental heterogeneity had no detectable effect on colonization rates in new ponds. In contrast, connectivity, space (based on latitude and longitude) and surface area were key determinants of colonization rates for copepods and cladocerans. This suggests dispersal limitation in cladocerans and copepods, but not in rotifers, possibly due to differences in propagule size and abundance.</p> </li> <li> <p><a target="_blank" onclick="trackOutboundLink('https://www.pubmedcentral.nih.gov/articlerender.fcgi?tool=pmcentrez&artid=4409088','PMC'); return false;" href="https://www.pubmedcentral.nih.gov/articlerender.fcgi?tool=pmcentrez&artid=4409088"><span>Analysis of microbial <span class="hlt">community</span> <span class="hlt">composition</span> in a lab-scale membrane distillation bioreactor</span></a></p> <p><a target="_blank" href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?DB=pmc">PubMed Central</a></p> <p>Zhang, Q; Shuwen, G; Zhang, J; Fane, AG; Kjelleberg, S; Rice, SA; McDougald, D</p> <p>2015-01-01</p> <p>Aims Membrane distillation bioreactors (MDBR) have potential for industrial applications where wastewater is hot or waste heat is available, but the role of micro-organisms in MDBRs has never been determined, and thus was the purpose of this study. Methods and Results Microbial <span class="hlt">communities</span> were characterized by bacterial and archaeal 16S and eukaryotic 18S rRNA gene tag-encoded pyrosequencing of DNA obtained from sludge. Taxonomy-independent analysis revealed that bacterial <span class="hlt">communities</span> had a relatively low richness and diversity, and <span class="hlt">community</span> <span class="hlt">composition</span> strongly correlated with conductivity, total nitrogen and bound extracellular polymeric substances (EPS). Taxonomy-dependent analysis revealed that Rubrobacter and Caldalkalibacillus were abundant members of the bacterial <span class="hlt">community</span>, but no archaea were detected. Eukaryotic <span class="hlt">communities</span> had a relatively high richness and diversity, and both changes in <span class="hlt">community</span> <span class="hlt">composition</span> and abundance of the dominant genus, Candida, correlated with bound EPS. Conclusions Thermophilic MDBR <span class="hlt">communities</span> were comprised of a low diversity bacterial <span class="hlt">community</span> and a highly diverse eukaryotic <span class="hlt">community</span> with no archea detected. <span class="hlt">Communities</span> exhibited low resilience to changes in operational parameters. Specifically, retenatate nutrient <span class="hlt">composition</span> and concentration was strongly correlated with the dominant species. Significance and Impact of the Study This study provides an understanding of microbial <span class="hlt">community</span> diversity in an MDBR, which is fundamental to the optimization of reactor performance. PMID:25604265</p> </li> <li> <p><a target="_blank" onclick="trackOutboundLink('http://www.dtic.mil/docs/citations/ADA630288','DTIC-ST'); return false;" href="http://www.dtic.mil/docs/citations/ADA630288"><span>Acoustic Scattering Models of <span class="hlt">Zooplankton</span> and Microstructure</span></a></p> <p><a target="_blank" href="http://www.dtic.mil/">DTIC Science & Technology</a></p> <p></p> <p>1999-09-30</p> <p>1998, a remotely operated vehicle was used to deploy acoustic transducers so that the acoustic scattering by siphonophores , a gas-bearing animal, could...their high frequency acoustics systems. 4) In addition, we have identified two types of <span class="hlt">zooplankton</span> ( siphonophores and pteropods) that have high...Benfield, P.H. Wiebe, and D. Chu, 1999. “In situ measurements of acoustic target strengths of siphonophores ,” Proceedings of the 2nd EAA</p> </li> <li> <p><a target="_blank" onclick="trackOutboundLink('http://adsabs.harvard.edu/abs/2007AcO....32..279B','NASAADS'); return false;" href="http://adsabs.harvard.edu/abs/2007AcO....32..279B"><span><span class="hlt">Zooplankton</span> interactions with toxic phytoplankton: Some implications for food web studies and algal defence strategies of feeding selectivity behaviour, toxin dilution and phytoplankton population diversity</span></a></p> <p><a target="_blank" href="http://adsabs.harvard.edu/abstract_service.html">NASA Astrophysics Data System (ADS)</a></p> <p>Barreiro, A.; Guisande, C.; Maneiro, I.; Vergara, A. R.; Riveiro, I.; Iglesias, P.</p> <p>2007-11-01</p> <p>This study focuses on the interactions between toxic phytoplankton and <span class="hlt">zooplankton</span> grazers. The experimental conditions used are an attempt to simulate situations that have, so far, received little attention. We presume the phytoplankton <span class="hlt">community</span> to be a set of species where a population of a toxic species is intrinsically diverse by the presence of coexisting strains with different toxic properties. The other species in the <span class="hlt">community</span> may not always be high-quality food for herbivorous <span class="hlt">zooplankton</span>. <span class="hlt">Zooplankton</span> populations may have developed adaptive responses to sympatric toxic phytoplankton species. <span class="hlt">Zooplankton</span> grazers may perform a specific feeding behaviour and its consequences on fitness will depend on the species ingested, the effect of toxins, and the presence of mechanisms of toxin dilution and compensatory feeding. Our target species are a strain of the dinoflagellate Alexandrium minutum and a sympatric population of the copepod Acartia clausi. Mixed diets were used with two kinds of A. minutum cells: non-toxic and toxic. The flagellate Rhodomonas baltica and the non-toxic dinoflagellate Alexandrium tamarense were added as accompanying species. The effect of each alga was studied in separate diets. The toxic A. minutum cells were shown to have negative effects on egg production, hatching success and total reproductive output, while, in terms of its effect on fitness, the non-toxic A. minutum was the best quality food offered. R. baltica and A. tamarense were in intermediate positions. In the mixed diets, copepods showed a strong preference for toxic A. minutum cells and a weaker one for A. tamarense cells, while non-toxic A. minutum was slightly negatively selected and R. baltica strongly negatively selected. Although the level of toxins accumulated by copepods was very similar, in both the diet with only toxic A. minutum cells and in the mixed diet, the negative effects on fitness in the mixed diet could be offset by toxin dilution mechanisms. The</p> </li> <li> <p><a target="_blank" onclick="trackOutboundLink('https://www.fs.usda.gov/treesearch/pubs/33896','TREESEARCH'); return false;" href="https://www.fs.usda.gov/treesearch/pubs/33896"><span>Testing the functional significance of microbial <span class="hlt">community</span> <span class="hlt">composition</span>.</span></a></p> <p><a target="_blank" href="http://www.fs.usda.gov/treesearch/">Treesearch</a></p> <p>Michael S. Strickland; Christian Lauber; Noah Fierer; Mark A. Bradford</p> <p>2009-01-01</p> <p>A critical assumption underlying terrestrial ecosystem models is that soil microbial <span class="hlt">communities</span>, when placed in a common environment, will function in an identical manner regardless of the <span class="hlt">composition</span>...</p> </li> <li> <p><a target="_blank" onclick="trackOutboundLink('https://www.ncbi.nlm.nih.gov/pubmed/23632089','PUBMED'); return false;" href="https://www.ncbi.nlm.nih.gov/pubmed/23632089"><span>Potential acidification impacts on <span class="hlt">zooplankton</span> in CCS leakage scenarios.</span></a></p> <p><a target="_blank" href="https://www.ncbi.nlm.nih.gov/entrez/query.fcgi?DB=pubmed">PubMed</a></p> <p>Halsband, Claudia; Kurihara, Haruko</p> <p>2013-08-30</p> <p>Carbon capture and storage (CCS) technologies involve localized acidification of significant volumes of seawater, inhabited mainly by planktonic species. Knowledge on potential impacts of these techniques on the survival and physiology of <span class="hlt">zooplankton</span>, and subsequent consequences for ecosystem health in targeted areas, is scarce. The recent literature has a focus on anthropogenic greenhouse gas emissions into the atmosphere, leading to enhanced absorption of CO2 by the oceans and a lowered seawater pH, termed ocean acidification. These studies explore the effects of changes in seawater chemistry, as predicted by climate models for the end of this century, on marine biota. Early studies have used unrealistically severe CO2/pH values in this context, but are relevant for CCS leakage scenarios. Little studied meso- and bathypelagic species of the deep sea may be especially vulnerable, as well as vertically migrating <span class="hlt">zooplankton</span>, which require significant residence times at great depths as part of their life cycle. Copyright © 2013 Elsevier Ltd. All rights reserved.</p> </li> <li> <p><a target="_blank" onclick="trackOutboundLink('https://www.ncbi.nlm.nih.gov/pubmed/22203999','PUBMED'); return false;" href="https://www.ncbi.nlm.nih.gov/pubmed/22203999"><span>Bacterial bioluminescence as a lure for marine <span class="hlt">zooplankton</span> and fish.</span></a></p> <p><a target="_blank" href="https://www.ncbi.nlm.nih.gov/entrez/query.fcgi?DB=pubmed">PubMed</a></p> <p>Zarubin, Margarita; Belkin, Shimshon; Ionescu, Michael; Genin, Amatzia</p> <p>2012-01-17</p> <p>The benefits of bioluminescence for nonsymbiotic marine bacteria have not been elucidated fully. One of the most commonly cited explanations, proposed more than 30 y ago, is that bioluminescence augments the propagation and dispersal of bacteria by attracting fish to consume the luminous material. This hypothesis, based mostly on the prevalence of luminous bacteria in fish guts, has not been tested experimentally. Here we show that <span class="hlt">zooplankton</span> that contacts and feeds on the luminescent bacterium Photobacterium leiognathi starts to glow, and demonstrate by video recordings that glowing individuals are highly vulnerable to predation by nocturnal fish. Glowing bacteria thereby are transferred to the nutritious guts of fish and <span class="hlt">zooplankton</span>, where they survive digestion and gain effective means for growth and dispersal. Using bioluminescence as bait appears to be highly beneficial for marine bacteria, especially in food-deprived environments of the deep sea.</p> </li> <li> <p><a target="_blank" onclick="trackOutboundLink('https://www.pubmedcentral.nih.gov/articlerender.fcgi?tool=pmcentrez&artid=5339224','PMC'); return false;" href="https://www.pubmedcentral.nih.gov/articlerender.fcgi?tool=pmcentrez&artid=5339224"><span><span class="hlt">Compositional</span> Stability of the Bacterial <span class="hlt">Community</span> in a Climate-Sensitive Sub-Arctic Peatland</span></a></p> <p><a target="_blank" href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?DB=pmc">PubMed Central</a></p> <p>Weedon, James T.; Kowalchuk, George A.; Aerts, Rien; Freriks, Stef; Röling, Wilfred F. M.; van Bodegom, Peter M.</p> <p>2017-01-01</p> <p>The climate sensitivity of microbe-mediated soil processes such as carbon and nitrogen cycling offers an interesting case for evaluating the corresponding sensitivity of microbial <span class="hlt">community</span> <span class="hlt">composition</span> to environmental change. Better understanding of the degree of linkage between functional and <span class="hlt">compositional</span> stability would contribute to ongoing efforts to build mechanistic models aiming at predicting rates of microbe-mediated processes. We used an amplicon sequencing approach to test if previously observed large effects of experimental soil warming on C and N cycle fluxes (50–100% increases) in a sub-arctic Sphagnum peatland were reflected in changes in the <span class="hlt">composition</span> of the soil bacterial <span class="hlt">community</span>. We found that treatments that previously induced changes to fluxes did not associate with changes in the phylogenetic <span class="hlt">composition</span> of the soil bacterial <span class="hlt">community</span>. For both DNA- and RNA-based analyses, variation in bacterial <span class="hlt">communities</span> could be explained by the hierarchy: spatial variation (12–15% of variance explained) > temporal variation (7–11%) > climate treatment (4–9%). We conclude that the bacterial <span class="hlt">community</span> in this environment is stable under changing conditions, despite the previously observed sensitivity of process rates—evidence that microbe-mediated soil processes can alter without concomitant changes in bacterial <span class="hlt">communities</span>. We propose that progress in linking soil microbial <span class="hlt">communities</span> to ecosystem processes can be advanced by further investigating the relative importance of <span class="hlt">community</span> <span class="hlt">composition</span> effects versus physico-chemical factors in controlling biogeochemical process rates in different contexts. PMID:28326062</p> </li> <li> <p><a target="_blank" onclick="trackOutboundLink('https://www.ncbi.nlm.nih.gov/pubmed/28326062','PUBMED'); return false;" href="https://www.ncbi.nlm.nih.gov/pubmed/28326062"><span><span class="hlt">Compositional</span> Stability of the Bacterial <span class="hlt">Community</span> in a Climate-Sensitive Sub-Arctic Peatland.</span></a></p> <p><a target="_blank" href="https://www.ncbi.nlm.nih.gov/entrez/query.fcgi?DB=pubmed">PubMed</a></p> <p>Weedon, James T; Kowalchuk, George A; Aerts, Rien; Freriks, Stef; Röling, Wilfred F M; van Bodegom, Peter M</p> <p>2017-01-01</p> <p>The climate sensitivity of microbe-mediated soil processes such as carbon and nitrogen cycling offers an interesting case for evaluating the corresponding sensitivity of microbial <span class="hlt">community</span> <span class="hlt">composition</span> to environmental change. Better understanding of the degree of linkage between functional and <span class="hlt">compositional</span> stability would contribute to ongoing efforts to build mechanistic models aiming at predicting rates of microbe-mediated processes. We used an amplicon sequencing approach to test if previously observed large effects of experimental soil warming on C and N cycle fluxes (50-100% increases) in a sub-arctic Sphagnum peatland were reflected in changes in the <span class="hlt">composition</span> of the soil bacterial <span class="hlt">community</span>. We found that treatments that previously induced changes to fluxes did not associate with changes in the phylogenetic <span class="hlt">composition</span> of the soil bacterial <span class="hlt">community</span>. For both DNA- and RNA-based analyses, variation in bacterial <span class="hlt">communities</span> could be explained by the hierarchy: spatial variation (12-15% of variance explained) > temporal variation (7-11%) > climate treatment (4-9%). We conclude that the bacterial <span class="hlt">community</span> in this environment is stable under changing conditions, despite the previously observed sensitivity of process rates-evidence that microbe-mediated soil processes can alter without concomitant changes in bacterial <span class="hlt">communities</span>. We propose that progress in linking soil microbial <span class="hlt">communities</span> to ecosystem processes can be advanced by further investigating the relative importance of <span class="hlt">community</span> <span class="hlt">composition</span> effects versus physico-chemical factors in controlling biogeochemical process rates in different contexts.</p> </li> <li> <p><a target="_blank" onclick="trackOutboundLink('http://adsabs.harvard.edu/abs/2016EGUGA..1817102K','NASAADS'); return false;" href="http://adsabs.harvard.edu/abs/2016EGUGA..1817102K"><span>Regional and inter-annual variability in Atlantic <span class="hlt">zooplankton</span> en route to the Arctic Ocean: potential effects of multi-path Atlantic water advection through Fram Strait and the Barents Sea</span></a></p> <p><a target="_blank" href="http://adsabs.harvard.edu/abstract_service.html">NASA Astrophysics Data System (ADS)</a></p> <p>Kwasniewski, Slawomir; Gluchowska, Marta; Trudnowska, Emilia; Ormanczyk, Mateusz; Walczowski, Waldemar; Beszczynska-Moeller, Agnieszka</p> <p>2016-04-01</p> <p>The Arctic is among the regions where the climate change effects on ecosystem will be the most rapid and consequential, with Arctic amplification recognized as an integral part of the process. Great part of the changes are forced by advection of warm waters from the North Atlantic and the expected modifications of Arctic marine ecosystem will be induced not only by changing environmental conditions but also as a result of introducing Atlantic biota. Thus, the knowledge of physical and biological heterogeneity of Atlantic inflow is requisite for understanding the effects of climate change on biological diversity and ecosystem functioning in the Arctic. The complex and variable two-branched structure of the Atlantic Water flow via Fram Strait and the Barents Sea most likely has a strong influence on the ocean biology in these regions, especially in the pelagic realm. <span class="hlt">Zooplankton</span> are key components of marine ecosystems which form essential links between primary producers and grazer/predator consumers, thus they are important for functioning of the biological carbon pump. Changes in <span class="hlt">zooplankton</span> distribution and abundance may have cascading effects on ecosystem functioning, with regulatory effects on climate. Based on data collected in summers of 2012-2014, within the scope of the Polish-Norwegian PAVE research project, we investigate <span class="hlt">zooplankton</span> distribution, abundance and selected structural characteristics of <span class="hlt">communities</span>, in relation to water mass properties in the Atlantic Water complex flow to the Arctic Ocean. The main questions addressed here are: what are the differences in <span class="hlt">zooplankton</span> patterns between the Fram Strait and Barents Sea branches, and how does the inter-annual variability of Atlantic Water advection relate to changes in <span class="hlt">zooplankton</span>? The results of the investigation are precondition for foreseeing changes in the pelagic realm in the Arctic Ocean and are necessary for constructing and tuning plankton components of ecosystem models.</p> </li> <li> <p><a target="_blank" onclick="trackOutboundLink('https://www.ncbi.nlm.nih.gov/pubmed/24551103','PUBMED'); return false;" href="https://www.ncbi.nlm.nih.gov/pubmed/24551103"><span>Spatio-temporal variability of the North Sea cod recruitment in relation to temperature and <span class="hlt">zooplankton</span>.</span></a></p> <p><a target="_blank" href="https://www.ncbi.nlm.nih.gov/entrez/query.fcgi?DB=pubmed">PubMed</a></p> <p>Nicolas, Delphine; Rochette, Sébastien; Llope, Marcos; Licandro, Priscilla</p> <p>2014-01-01</p> <p>The North Sea cod (Gadus morhua, L.) stock has continuously declined over the past four decades linked with overfishing and climate change. Changes in stock structure due to overfishing have made the stock largely dependent on its recruitment success, which greatly relies on environmental conditions. Here we focus on the spatio-temporal variability of cod recruitment in an effort to detect changes during the critical early life stages. Using International Bottom Trawl Survey (IBTS) data from 1974 to 2011, a major spatio-temporal change in the distribution of cod recruits was identified in the late 1990s, characterized by a pronounced decrease in the central and southeastern North Sea stock. Other minor spatial changes were also recorded in the mid-1980s and early 1990s. We tested whether the observed changes in recruits distribution could be related with direct (i.e. temperature) and/or indirect (i.e. changes in the quantity and quality of <span class="hlt">zooplankton</span> prey) effects of climate variability. The analyses were based on spatially-resolved time series, i.e. sea surface temperature (SST) from the Hadley Center and <span class="hlt">zooplankton</span> records from the Continuous Plankton Recorder Survey. We showed that spring SST increase was the main driver for the most recent decrease in cod recruitment. The late 1990s were also characterized by relatively low total <span class="hlt">zooplankton</span> biomass, particularly of energy-rich <span class="hlt">zooplankton</span> such as the copepod Calanus finmarchicus, which have further contributed to the decline of North Sea cod recruitment. Long-term spatially-resolved observations were used to produce regional distribution models that could further be used to predict the abundance of North Sea cod recruits based on temperature and <span class="hlt">zooplankton</span> food availability.</p> </li> <li> <p><a target="_blank" onclick="trackOutboundLink('https://www.pubmedcentral.nih.gov/articlerender.fcgi?tool=pmcentrez&artid=3923776','PMC'); return false;" href="https://www.pubmedcentral.nih.gov/articlerender.fcgi?tool=pmcentrez&artid=3923776"><span>Spatio-Temporal Variability of the North Sea Cod Recruitment in Relation to Temperature and <span class="hlt">Zooplankton</span></span></a></p> <p><a target="_blank" href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?DB=pmc">PubMed Central</a></p> <p>Nicolas, Delphine; Rochette, Sébastien; Llope, Marcos; Licandro, Priscilla</p> <p>2014-01-01</p> <p>The North Sea cod (Gadus morhua, L.) stock has continuously declined over the past four decades linked with overfishing and climate change. Changes in stock structure due to overfishing have made the stock largely dependent on its recruitment success, which greatly relies on environmental conditions. Here we focus on the spatio-temporal variability of cod recruitment in an effort to detect changes during the critical early life stages. Using International Bottom Trawl Survey (IBTS) data from 1974 to 2011, a major spatio-temporal change in the distribution of cod recruits was identified in the late 1990s, characterized by a pronounced decrease in the central and southeastern North Sea stock. Other minor spatial changes were also recorded in the mid-1980s and early 1990s. We tested whether the observed changes in recruits distribution could be related with direct (i.e. temperature) and/or indirect (i.e. changes in the quantity and quality of <span class="hlt">zooplankton</span> prey) effects of climate variability. The analyses were based on spatially-resolved time series, i.e. sea surface temperature (SST) from the Hadley Center and <span class="hlt">zooplankton</span> records from the Continuous Plankton Recorder Survey. We showed that spring SST increase was the main driver for the most recent decrease in cod recruitment. The late 1990s were also characterized by relatively low total <span class="hlt">zooplankton</span> biomass, particularly of energy-rich <span class="hlt">zooplankton</span> such as the copepod Calanus finmarchicus, which have further contributed to the decline of North Sea cod recruitment. Long-term spatially-resolved observations were used to produce regional distribution models that could further be used to predict the abundance of North Sea cod recruits based on temperature and <span class="hlt">zooplankton</span> food availability. PMID:24551103</p> </li> <li> <p><a target="_blank" onclick="trackOutboundLink('https://pubs.er.usgs.gov/publication/70031395','USGSPUBS'); return false;" href="https://pubs.er.usgs.gov/publication/70031395"><span>Parallel structure among environmental gradients and three trophic levels in a subarctic estuary</span></a></p> <p><a target="_blank" href="http://pubs.er.usgs.gov/pubs/index.jsp?view=adv">USGS Publications Warehouse</a></p> <p>Speckman, Suzann G.; Piatt, John F.; Minte-Vera, C. V.; Parrish, Julia K.</p> <p>2005-01-01</p> <p>We assessed spatial and temporal variability in the physical environment of a subarctic estuary, and examined concurrent patterns of chlorophyll α abundance (fluorescence), and <span class="hlt">zooplankton</span> and forage fish <span class="hlt">community</span> structure. Surveys were conducted in lower Cook Inlet, Alaska, during late July and early August from 1997 through 1999. Principle components analysis (PCA) revealed that spatial heterogeneity in the physical oceanographic environment of lower Cook Inlet could be modeled as three marine-estuarine gradients characterized by temperature, salinity, bottom depth, and turbidity. The gradients persisted from 1997 through 1999, and PCA explained 68% to 92% of the variance in physical oceanography for each gradient-year combination. Correlations between chlorophyll α abundance and distribution and the PCA axes were weak. Chlorophyll was reduced by turbidity, and low levels occurred in areas with high levels of suspended sediments. Detrended correspondence analysis (DCA) was used to order the sample sites based on species <span class="hlt">composition</span> and to order the <span class="hlt">zooplankton</span> and forage fish taxa based on similarities among sample sites for each gradient-year. Correlations between the structure of the physical environment (PCA axis 1) and <span class="hlt">zooplankton</span> <span class="hlt">community</span> structure (DCA axis 1) were strong (r = 0.43-0.86) in all years for the three marine-estuarine gradients, suggesting that <span class="hlt">zooplankton</span> <span class="hlt">community</span> <span class="hlt">composition</span> was structured by the physical environment. The physical environment (PCA) and forage fish <span class="hlt">community</span> structure (DCA) were weakly correlated in all years along Gradient 2, defined by halocline intensity and surface temperature and salinity, even though these physical variables were more important for defining <span class="hlt">zooplankton</span> habitats. However, the physical environment (PCA) and forage fish <span class="hlt">community</span> structure (DCA) were strongly correlated along the primary marine-estuarine gradient (#1) in 1997 (r = 0.87) and 1998 (r = 0.82). The correlation was poor (r = 0.32) in</p> </li> <li> <p><a target="_blank" onclick="trackOutboundLink('http://adsabs.harvard.edu/abs/2005PrOce..66...25S','NASAADS'); return false;" href="http://adsabs.harvard.edu/abs/2005PrOce..66...25S"><span>Parallel structure among environmental gradients and three trophic levels in a subarctic estuary</span></a></p> <p><a target="_blank" href="http://adsabs.harvard.edu/abstract_service.html">NASA Astrophysics Data System (ADS)</a></p> <p>Speckman, Suzann G.; Piatt, John F.; Minte-Vera, Carolina V.; Parrish, Julia K.</p> <p>2005-07-01</p> <p>We assessed spatial and temporal variability in the physical environment of a subarctic estuary, and examined concurrent patterns of chlorophyll α abundance (fluorescence), and <span class="hlt">zooplankton</span> and forage fish <span class="hlt">community</span> structure. Surveys were conducted in lower Cook Inlet, Alaska, during late July and early August from 1997 through 1999. Principle components analysis (PCA) revealed that spatial heterogeneity in the physical oceanographic environment of lower Cook Inlet could be modeled as three marine-estuarine gradients characterized by temperature, salinity, bottom depth, and turbidity. The gradients persisted from 1997 through 1999, and PCA explained 68% to 92% of the variance in physical oceanography for each gradient-year combination. Correlations between chlorophyll α abundance and distribution and the PCA axes were weak. Chlorophyll was reduced by turbidity, and low levels occurred in areas with high levels of suspended sediments. Detrended correspondence analysis (DCA) was used to order the sample sites based on species <span class="hlt">composition</span> and to order the <span class="hlt">zooplankton</span> and forage fish taxa based on similarities among sample sites for each gradient-year. Correlations between the structure of the physical environment (PCA axis 1) and <span class="hlt">zooplankton</span> <span class="hlt">community</span> structure (DCA axis 1) were strong ( r = 0.43-0.86) in all years for the three marine-estuarine gradients, suggesting that <span class="hlt">zooplankton</span> <span class="hlt">community</span> <span class="hlt">composition</span> was structured by the physical environment. The physical environment (PCA) and forage fish <span class="hlt">community</span> structure (DCA) were weakly correlated in all years along Gradient 2, defined by halocline intensity and surface temperature and salinity, even though these physical variables were more important for defining <span class="hlt">zooplankton</span> habitats. However, the physical environment (PCA) and forage fish <span class="hlt">community</span> structure (DCA) were strongly correlated along the primary marine-estuarine gradient (#1) in 1997 ( r = 0.87) and 1998 ( r = 0.82). The correlation was poor ( r = 0.32) in</p> </li> <li> <p><a target="_blank" onclick="trackOutboundLink('http://adsabs.harvard.edu/abs/2017ECSS..199....1S','NASAADS'); return false;" href="http://adsabs.harvard.edu/abs/2017ECSS..199....1S"><span><span class="hlt">Zooplankton</span> variability in the subtropical estuarine system of Paranaguá Bay, Brazil, in 2012 and 2013</span></a></p> <p><a target="_blank" href="http://adsabs.harvard.edu/abstract_service.html">NASA Astrophysics Data System (ADS)</a></p> <p>Salvador, Bianca; Bersano, José Guilherme F.</p> <p>2017-12-01</p> <p>Spatial and temporal dynamics of <span class="hlt">zooplankton</span> assemblages were studied in the Paranaguá Estuarine System (southern Brazil), including data from the summer (rainy) and winter (dry) periods of 2012 and 2013. <span class="hlt">Zooplankton</span> and environmental data were collected at 37 stations along the estuary and examined by multivariate methods. The results indicated significantly distinct assemblages; differences in abundance were the major source of variability, mainly over the temporal scale. The highest abundances were observed during rainy periods, especially in 2012, when the mean density reached 16378 ind.m-3. Winter assemblages showed lower densities but higher species diversity, due to the more extensive intrusion of coastal waters. Of the 14 taxonomic groups recorded, Copepoda was the most abundant and diverse (92% of total abundance and 22 species identified). The coastal copepods Acartia lilljeborgi (44%) and Oithona hebes (26%) were the most important species in both abundance and frequency, followed by the estuarine Pseudodiaptomus acutus and the neritic Temora turbinata. The results indicated strong influences of environmental parameters on the <span class="hlt">community</span> structure, especially in response to seasonal variations. The spatial distribution of species was probably determined mainly by their preferences and tolerances for specific salinity conditions. On the other hand, the abundances were strongly related to higher water temperature and precipitation rates, which can drive nutrient inputs and consequently food supply in the system, due to intense continental drainage.</p> </li> <li> <p><a target="_blank" onclick="trackOutboundLink('https://www.pubmedcentral.nih.gov/articlerender.fcgi?tool=pmcentrez&artid=3792109','PMC'); return false;" href="https://www.pubmedcentral.nih.gov/articlerender.fcgi?tool=pmcentrez&artid=3792109"><span>Effects of Crude Oil Exposure on Bioaccumulation of Polycyclic Aromatic Hydrocarbons and Survival of Adult and Larval Stages of Gelatinous <span class="hlt">Zooplankton</span></span></a></p> <p><a target="_blank" href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?DB=pmc">PubMed Central</a></p> <p>Almeda, Rodrigo; Wambaugh, Zoe; Chai, Chao; Wang, Zucheng; Liu, Zhanfei; Buskey, Edward J.</p> <p>2013-01-01</p> <p>Gelatinous <span class="hlt">zooplankton</span> play an important role in marine food webs both as major consumers of metazooplankton and as prey of apex predators (e.g., tuna, sunfish, sea turtles). However, little is known about the effects of crude oil spills on these important components of planktonic <span class="hlt">communities</span>. We determined the effects of Louisiana light sweet crude oil exposure on survival and bioaccumulation of polycyclic aromatic hydrocarbons (PAHs) in adult stages of the scyphozoans Pelagia noctiluca and Aurelia aurita and the ctenophore Mnemiopsis leidyi, and on survival of ephyra larvae of A. aurita and cydippid larvae of M. leidyi, in the laboratory. Adult P. noctiluca showed 100% mortality at oil concentration ≥20 µL L−1 after 16 h. In contrast, low or non-lethal effects were observed on adult stages of A. aurita and M. leidyi exposed at oil concentration ≤25 µL L−1 after 6 days. Survival of ephyra and cydippid larva decreased with increasing crude oil concentration and exposition time. The median lethal concentration (LC50) for ephyra larvae ranged from 14.41 to 0.15 µL L−1 after 1 and 3 days, respectively. LC50 for cydippid larvae ranged from 14.52 to 8.94 µL L−1 after 3 and 6 days, respectively. We observed selective bioaccumulation of chrysene, phenanthrene and pyrene in A. aurita and chrysene, pyrene, benzo[a]pyrene, benzo[b]fluoranthene, benzo[k]fluoranthene, and benzo[a]anthracene in M. leidyi. Overall, our results indicate that (1) A. aurita and M. leidyi adults had a high tolerance to crude oil exposure compared to other <span class="hlt">zooplankton</span>, whereas P. noctiluca was highly sensitive to crude oil, (2) larval stages of gelatinous <span class="hlt">zooplankton</span> were more sensitive to crude oil than adult stages, and (3) some of the most toxic PAHs of crude oil can be bioaccumulated in gelatinous <span class="hlt">zooplankton</span> and potentially be transferred up the food web and contaminate apex predators. PMID:24116004</p> </li> </ol> <div class="pull-right"> <ul class="pagination"> <li><a href="#" onclick='return showDiv("page_1");'>«</a></li> <li><a href="#" onclick='return showDiv("page_15");'>15</a></li> <li><a href="#" onclick='return showDiv("page_16");'>16</a></li> <li class="active"><span>17</span></li> <li><a href="#" onclick='return showDiv("page_18");'>18</a></li> <li><a href="#" onclick='return showDiv("page_19");'>19</a></li> <li><a href="#" onclick='return showDiv("page_25");'>»</a></li> </ul> </div> </div><!-- col-sm-12 --> </div><!-- row --> </div><!-- page_17 --> <div id="page_18" class="hiddenDiv"> <div class="row"> <div class="col-sm-12"> <div class="pull-right"> <ul class="pagination"> <li><a href="#" onclick='return showDiv("page_1");'>«</a></li> <li><a href="#" onclick='return showDiv("page_16");'>16</a></li> <li><a href="#" onclick='return showDiv("page_17");'>17</a></li> <li class="active"><span>18</span></li> <li><a href="#" onclick='return showDiv("page_19");'>19</a></li> <li><a href="#" onclick='return showDiv("page_20");'>20</a></li> <li><a href="#" onclick='return showDiv("page_25");'>»</a></li> </ul> </div> </div> </div> <div class="row"> <div class="col-sm-12"> <ol class="result-class" start="341"> <li> <p><a target="_blank" onclick="trackOutboundLink('https://www.ncbi.nlm.nih.gov/pubmed/27641768','PUBMED'); return false;" href="https://www.ncbi.nlm.nih.gov/pubmed/27641768"><span><span class="hlt">Zooplankton</span> Gut Passage Mobilizes Lithogenic Iron for Ocean Productivity.</span></a></p> <p><a target="_blank" href="https://www.ncbi.nlm.nih.gov/entrez/query.fcgi?DB=pubmed">PubMed</a></p> <p>Schmidt, Katrin; Schlosser, Christian; Atkinson, Angus; Fielding, Sophie; Venables, Hugh J; Waluda, Claire M; Achterberg, Eric P</p> <p>2016-10-10</p> <p>Iron is an essential nutrient for phytoplankton, but low concentrations limit primary production and associated atmospheric carbon drawdown in large parts of the world's oceans [1, 2]. Lithogenic particles deriving from aeolian dust deposition, glacial runoff, or river discharges can form an important source if the attached iron becomes dissolved and therefore bioavailable [3-5]. Acidic digestion by <span class="hlt">zooplankton</span> is a potential mechanism for iron mobilization [6], but evidence is lacking. Here we show that Antarctic krill sampled near glacial outlets at the island of South Georgia (Southern Ocean) ingest large amounts of lithogenic particles and contain 3-fold higher iron concentrations in their muscle than specimens from offshore, which confirms mineral dissolution in their guts. About 90% of the lithogenic and biogenic iron ingested by krill is passed into their fecal pellets, which contain ∼5-fold higher proportions of labile (reactive) iron than intact diatoms. The mobilized iron can be released in dissolved form directly from krill or via multiple pathways involving microbes, other <span class="hlt">zooplankton</span>, and krill predators. This can deliver substantial amounts of bioavailable iron and contribute to the fertilization of coastal waters and the ocean beyond. In line with our findings, phytoplankton blooms downstream of South Georgia are more intensive and longer lasting during years with high krill abundance on-shelf. Thus, krill crop phytoplankton but boost new production via their nutrient supply. Understanding and quantifying iron mobilization by <span class="hlt">zooplankton</span> is essential to predict ocean productivity in a warming climate where lithogenic iron inputs from deserts, glaciers, and rivers are increasing [7-10]. Copyright © 2016 Elsevier Ltd. All rights reserved.</p> </li> <li> <p><a target="_blank" onclick="trackOutboundLink('https://www.ncbi.nlm.nih.gov/pubmed/25604265','PUBMED'); return false;" href="https://www.ncbi.nlm.nih.gov/pubmed/25604265"><span>Analysis of microbial <span class="hlt">community</span> <span class="hlt">composition</span> in a lab-scale membrane distillation bioreactor.</span></a></p> <p><a target="_blank" href="https://www.ncbi.nlm.nih.gov/entrez/query.fcgi?DB=pubmed">PubMed</a></p> <p>Zhang, Q; Shuwen, G; Zhang, J; Fane, A G; Kjelleberg, S; Rice, S A; McDougald, D</p> <p>2015-04-01</p> <p>Membrane distillation bioreactors (MDBR) have potential for industrial applications where wastewater is hot or waste heat is available, but the role of micro-organisms in MDBRs has never been determined, and thus was the purpose of this study. Microbial <span class="hlt">communities</span> were characterized by bacterial and archaeal 16S and eukaryotic 18S rRNA gene tag-encoded pyrosequencing of DNA obtained from sludge. Taxonomy-independent analysis revealed that bacterial <span class="hlt">communities</span> had a relatively low richness and diversity, and <span class="hlt">community</span> <span class="hlt">composition</span> strongly correlated with conductivity, total nitrogen and bound extracellular polymeric substances (EPS). Taxonomy-dependent analysis revealed that Rubrobacter and Caldalkalibacillus were abundant members of the bacterial <span class="hlt">community</span>, but no archaea were detected. Eukaryotic <span class="hlt">communities</span> had a relatively high richness and diversity, and both changes in <span class="hlt">community</span> <span class="hlt">composition</span> and abundance of the dominant genus, Candida, correlated with bound EPS. Thermophilic MDBR <span class="hlt">communities</span> were comprised of a low diversity bacterial <span class="hlt">community</span> and a highly diverse eukaryotic <span class="hlt">community</span> with no archea detected. <span class="hlt">Communities</span> exhibited low resilience to changes in operational parameters. Specifically, retenatate nutrient <span class="hlt">composition</span> and concentration was strongly correlated with the dominant species. This study provides an understanding of microbial <span class="hlt">community</span> diversity in an MDBR, which is fundamental to the optimization of reactor performance. © 2015 The Authors published by John Wiley & Sons Ltd on behalf of Society for Applied Microbiology.</p> </li> <li> <p><a target="_blank" onclick="trackOutboundLink('https://www.pubmedcentral.nih.gov/articlerender.fcgi?tool=pmcentrez&artid=4107847','PMC'); return false;" href="https://www.pubmedcentral.nih.gov/articlerender.fcgi?tool=pmcentrez&artid=4107847"><span><span class="hlt">Community</span> size and <span class="hlt">composition</span> of ammonia oxidizers and denitrifiers in an alluvial intertidal wetland ecosystem</span></a></p> <p><a target="_blank" href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?DB=pmc">PubMed Central</a></p> <p>Hu, Ziye; Meng, Han; Shi, Jin-Huan; Bu, Nai-Shun; Fang, Chang-Ming; Quan, Zhe-Xue</p> <p>2014-01-01</p> <p>Global nitrogen cycling is mainly mediated by the activity of microorganisms. Nitrogen cycle processes are mediated by functional groups of microorganisms that are affected by constantly changing environmental conditions and substrate availability. In this study, we investigated the temporal and spatial patterns of nitrifier and denitrifier <span class="hlt">communities</span> in an intertidal wetland. Soil samples were collected over four distinct seasons from three locations with different vegetative cover. Multiple environmental factors and process rates were measured and analyzed together with the <span class="hlt">community</span> size and <span class="hlt">composition</span> profiles. We observed that the <span class="hlt">community</span> size and <span class="hlt">composition</span> of the nitrifiers and denitrifiers are affected significantly by seasonal factors, while vegetative cover affected the <span class="hlt">community</span> <span class="hlt">composition</span>. The seasonal impacts on the <span class="hlt">community</span> size of ammonia oxidizing archaea (AOA) are much higher than that of ammonia oxidizing bacteria (AOB). The seasonal change was a more important indicator for AOA <span class="hlt">community</span> <span class="hlt">composition</span> patterns, while vegetation was more important for the AOB <span class="hlt">community</span> patterns. The microbial process rates were correlated with both the <span class="hlt">community</span> size and <span class="hlt">composition</span>. PMID:25101072</p> </li> <li> <p><a target="_blank" onclick="trackOutboundLink('https://www.pubmedcentral.nih.gov/articlerender.fcgi?tool=pmcentrez&artid=3338777','PMC'); return false;" href="https://www.pubmedcentral.nih.gov/articlerender.fcgi?tool=pmcentrez&artid=3338777"><span>Land Cover and Rainfall Interact to Shape Waterbird <span class="hlt">Community</span> <span class="hlt">Composition</span></span></a></p> <p><a target="_blank" href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?DB=pmc">PubMed Central</a></p> <p>Studds, Colin E.; DeLuca, William V.; Baker, Matthew E.; King, Ryan S.; Marra, Peter P.</p> <p>2012-01-01</p> <p>Human land cover can degrade estuaries directly through habitat loss and fragmentation or indirectly through nutrient inputs that reduce water quality. Strong precipitation events are occurring more frequently, causing greater hydrological connectivity between watersheds and estuaries. Nutrient enrichment and dissolved oxygen depletion that occur following these events are known to limit populations of benthic macroinvertebrates and commercially harvested species, but the consequences for top consumers such as birds remain largely unknown. We used non-metric multidimensional scaling (MDS) and structural equation modeling (SEM) to understand how land cover and annual variation in rainfall interact to shape waterbird <span class="hlt">community</span> <span class="hlt">composition</span> in Chesapeake Bay, USA. The MDS ordination indicated that urban subestuaries shifted from a mixed generalist-specialist <span class="hlt">community</span> in 2002, a year of severe drought, to generalist-dominated <span class="hlt">community</span> in 2003, of year of high rainfall. The SEM revealed that this change was concurrent with a sixfold increase in nitrate-N concentration in subestuaries. In the drought year of 2002, waterbird <span class="hlt">community</span> <span class="hlt">composition</span> depended only on the direct effect of urban development in watersheds. In the wet year of 2003, <span class="hlt">community</span> <span class="hlt">composition</span> depended both on this direct effect and on indirect effects associated with high nitrate-N inputs to northern parts of the Bay, particularly in urban subestuaries. Our findings suggest that increased runoff during periods of high rainfall can depress water quality enough to alter the <span class="hlt">composition</span> of estuarine waterbird <span class="hlt">communities</span>, and that this effect is compounded in subestuaries dominated by urban development. Estuarine restoration programs often chart progress by monitoring stressors and indicators, but rarely assess multivariate relationships among them. Estuarine management planning could be improved by tracking the structure of relationships among land cover, water quality, and waterbirds. Unraveling these</p> </li> <li> <p><a target="_blank" onclick="trackOutboundLink('https://www.ncbi.nlm.nih.gov/pubmed/22558286','PUBMED'); return false;" href="https://www.ncbi.nlm.nih.gov/pubmed/22558286"><span>Land cover and rainfall interact to shape waterbird <span class="hlt">community</span> <span class="hlt">composition</span>.</span></a></p> <p><a target="_blank" href="https://www.ncbi.nlm.nih.gov/entrez/query.fcgi?DB=pubmed">PubMed</a></p> <p>Studds, Colin E; DeLuca, William V; Baker, Matthew E; King, Ryan S; Marra, Peter P</p> <p>2012-01-01</p> <p>Human land cover can degrade estuaries directly through habitat loss and fragmentation or indirectly through nutrient inputs that reduce water quality. Strong precipitation events are occurring more frequently, causing greater hydrological connectivity between watersheds and estuaries. Nutrient enrichment and dissolved oxygen depletion that occur following these events are known to limit populations of benthic macroinvertebrates and commercially harvested species, but the consequences for top consumers such as birds remain largely unknown. We used non-metric multidimensional scaling (MDS) and structural equation modeling (SEM) to understand how land cover and annual variation in rainfall interact to shape waterbird <span class="hlt">community</span> <span class="hlt">composition</span> in Chesapeake Bay, USA. The MDS ordination indicated that urban subestuaries shifted from a mixed generalist-specialist <span class="hlt">community</span> in 2002, a year of severe drought, to generalist-dominated <span class="hlt">community</span> in 2003, of year of high rainfall. The SEM revealed that this change was concurrent with a sixfold increase in nitrate-N concentration in subestuaries. In the drought year of 2002, waterbird <span class="hlt">community</span> <span class="hlt">composition</span> depended only on the direct effect of urban development in watersheds. In the wet year of 2003, <span class="hlt">community</span> <span class="hlt">composition</span> depended both on this direct effect and on indirect effects associated with high nitrate-N inputs to northern parts of the Bay, particularly in urban subestuaries. Our findings suggest that increased runoff during periods of high rainfall can depress water quality enough to alter the <span class="hlt">composition</span> of estuarine waterbird <span class="hlt">communities</span>, and that this effect is compounded in subestuaries dominated by urban development. Estuarine restoration programs often chart progress by monitoring stressors and indicators, but rarely assess multivariate relationships among them. Estuarine management planning could be improved by tracking the structure of relationships among land cover, water quality, and waterbirds. Unraveling these</p> </li> <li> <p><a target="_blank" onclick="trackOutboundLink('https://www.pubmedcentral.nih.gov/articlerender.fcgi?tool=pmcentrez&artid=4054126','PMC'); return false;" href="https://www.pubmedcentral.nih.gov/articlerender.fcgi?tool=pmcentrez&artid=4054126"><span>High-Resolution Melt Analysis for Rapid Comparison of Bacterial <span class="hlt">Community</span> <span class="hlt">Compositions</span></span></a></p> <p><a target="_blank" href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?DB=pmc">PubMed Central</a></p> <p>Hjelmsø, Mathis Hjort; Hansen, Lars Hestbjerg; Bælum, Jacob; Feld, Louise; Holben, William E.</p> <p>2014-01-01</p> <p>In the study of bacterial <span class="hlt">community</span> <span class="hlt">composition</span>, 16S rRNA gene amplicon sequencing is today among the preferred methods of analysis. The cost of nucleotide sequence analysis, including requisite computational and bioinformatic steps, however, takes up a large part of many research budgets. High-resolution melt (HRM) analysis is the study of the melt behavior of specific PCR products. Here we describe a novel high-throughput approach in which we used HRM analysis targeting the 16S rRNA gene to rapidly screen multiple complex samples for differences in bacterial <span class="hlt">community</span> <span class="hlt">composition</span>. We hypothesized that HRM analysis of amplified 16S rRNA genes from a soil ecosystem could be used as a screening tool to identify changes in bacterial <span class="hlt">community</span> structure. This hypothesis was tested using a soil microcosm setup exposed to a total of six treatments representing different combinations of pesticide and fertilization treatments. The HRM analysis identified a shift in the bacterial <span class="hlt">community</span> <span class="hlt">composition</span> in two of the treatments, both including the soil fumigant Basamid GR. These results were confirmed with both denaturing gradient gel electrophoresis (DGGE) analysis and 454-based 16S rRNA gene amplicon sequencing. HRM analysis was shown to be a fast, high-throughput technique that can serve as an effective alternative to gel-based screening methods to monitor microbial <span class="hlt">community</span> <span class="hlt">composition</span>. PMID:24610853</p> </li> <li> <p><a target="_blank" onclick="trackOutboundLink('https://www.osti.gov/servlets/purl/5675083','SCIGOV-STC'); return false;" href="https://www.osti.gov/servlets/purl/5675083"><span></span></a></p> <p><a target="_blank" href="http://www.osti.gov/search">DOE Office of Scientific and Technical Information (OSTI.GOV)</a></p> <p>Jeffries, H. P.</p> <p></p> <p>Distributions of organic constituents in marine <span class="hlt">communities</span> should yield a worldwide classification scheme within which any localized phenomena would be immediately apparent. This idea was tested on the <span class="hlt">zooplankton</span> along an environmental gradient extending from Rhode Island Sound, through Narragansett Bay and into its polluted tributary, the Providence River. On the basis of fatty acid <span class="hlt">composition</span>, both the macro- and microzooplankton could be precisely classified to the habitat of origin. Biochemically the microzooplankton changed uniformly with respect to linear distance though the riverine, estuarine and offshore habitats. In macrozooplankton, the relation between biochemical change and linear distance from the rivermore » seaward was a power curve: sharply changing at first, becoming more nearly constant offshore. Particulate pollution in the river merely reinforced natural fatty acid sources in the <span class="hlt">zooplankton</span>'s food - part of a pattern in which environmentally induced effects were expressed inshore, genetic influences offshore. In each habitat species diversity was inversely related to the <span class="hlt">community</span>'s stability of fatty acid <span class="hlt">composition</span>. These estimates revealed greatest dynamical robustness in the prolific yet simple riverine <span class="hlt">zooplankton</span>, suggesting that the stable domain of parameter space was likewise greater here than offshore. Despite its diversity, microzooplankton was more dynamically fragile than the macrozooplankton, in agreement with current theory on the stability of <span class="hlt">communities</span>. We conclude that monomeric <span class="hlt">composition</span> offers a basic rationale for characterizing the sensitivities of natural <span class="hlt">communities</span> to environmental change.« less</p> </li> <li> <p><a target="_blank" onclick="trackOutboundLink('https://www.ncbi.nlm.nih.gov/pubmed/28543616','PUBMED'); return false;" href="https://www.ncbi.nlm.nih.gov/pubmed/28543616"><span>Experimental soil warming shifts the fungal <span class="hlt">community</span> <span class="hlt">composition</span> at the alpine treeline.</span></a></p> <p><a target="_blank" href="https://www.ncbi.nlm.nih.gov/entrez/query.fcgi?DB=pubmed">PubMed</a></p> <p>Solly, Emily F; Lindahl, Björn D; Dawes, Melissa A; Peter, Martina; Souza, Rômulo C; Rixen, Christian; Hagedorn, Frank</p> <p>2017-07-01</p> <p>Increased CO 2 emissions and global warming may alter the <span class="hlt">composition</span> of fungal <span class="hlt">communities</span> through the removal of temperature limitation in the plant-soil system, faster nitrogen (N) cycling and changes in the carbon (C) allocation of host plants to the rhizosphere. At a Swiss treeline featuring Larix decidua and Pinus uncinata, the effects of multiple years of CO 2 enrichment and experimental soil warming on the fungal <span class="hlt">community</span> <span class="hlt">composition</span> in the organic horizons were analysed using 454-pyrosequencing of ITS2 amplicons. Sporocarp production and colonization of ectomycorrhizal root tips were investigated in parallel. Fungal <span class="hlt">community</span> <span class="hlt">composition</span> was significantly altered by soil warming, whereas CO 2 enrichment had little effect. Tree species influenced fungal <span class="hlt">community</span> <span class="hlt">composition</span> and the magnitude of the warming responses. The abundance of ectomycorrhizal fungal taxa was positively correlated with N availability, and ectomycorrhizal taxa specialized for conditions of high N availability proliferated with warming, corresponding to considerable increases in inorganic N in warmed soils. Traits related to N utilization are important in determining the responses of ectomycorrhizal fungi to warming in N-poor cold ecosystems. Shifts in the overall fungal <span class="hlt">community</span> <span class="hlt">composition</span> in response to higher temperatures may alter fungal-driven processes with potential feedbacks on ecosystem N cycling and C storage at the alpine treeline. © 2017 The Authors. New Phytologist © 2017 New Phytologist Trust.</p> </li> <li> <p><a target="_blank" onclick="trackOutboundLink('https://www.ncbi.nlm.nih.gov/pubmed/21384215','PUBMED'); return false;" href="https://www.ncbi.nlm.nih.gov/pubmed/21384215"><span>Urban stormwater runoff drives denitrifying <span class="hlt">community</span> <span class="hlt">composition</span> through changes in sediment texture and carbon content.</span></a></p> <p><a target="_blank" href="https://www.ncbi.nlm.nih.gov/entrez/query.fcgi?DB=pubmed">PubMed</a></p> <p>Perryman, Shane E; Rees, Gavin N; Walsh, Christopher J; Grace, Michael R</p> <p>2011-05-01</p> <p>The export of nitrogen from urban catchments is a global problem, and denitrifying bacteria in stream ecosystems are critical for reducing in-stream N. However, the environmental factors that control the <span class="hlt">composition</span> of denitrifying <span class="hlt">communities</span> in streams are not well understood. We determined whether denitrifying <span class="hlt">community</span> <span class="hlt">composition</span> in sediments of nine streams on the eastern fringe of Melbourne, Australia was correlated with two measures of catchment urban impact: effective imperviousness (EI, the proportion of a catchment covered by impervious surfaces with direct connection to streams) or septic tank density (which affects stream water chemistry, particularly stream N concentrations). Denitrifying <span class="hlt">community</span> structure was examined by comparing terminal restriction fragment length polymorphisms of nosZ genes in the sediments, as the nosZ gene codes for nitrous oxide reductase, the last step in the denitrification pathway. We also determined the chemical and physical characteristics of the streams that were best correlated with denitrifying <span class="hlt">community</span> <span class="hlt">composition</span>. EI was strongly correlated with <span class="hlt">community</span> <span class="hlt">composition</span> and sediment physical and chemical properties, while septic tank density was not. Sites with high EI were sandier, with less fine sediment and lower organic carbon content, higher sediment cations (calcium, sodium and magnesium) and water filterable reactive phosphorus concentrations. These were also the best small-scale environmental variables that explained denitrifying <span class="hlt">community</span> <span class="hlt">composition</span>. Among our study streams, which differed in the degree of urban stormwater impact, sediment grain size and carbon content are the most likely drivers of change in <span class="hlt">community</span> <span class="hlt">composition</span>. Denitrifying <span class="hlt">community</span> <span class="hlt">composition</span> is another in a long list of ecological indicators that suggest the profound degradation of streams is caused by urban stormwater runoff. While the relationships between denitrifying <span class="hlt">community</span> <span class="hlt">composition</span> and denitrification rates are yet to be</p> </li> <li> <p><a target="_blank" onclick="trackOutboundLink('https://www.ncbi.nlm.nih.gov/pubmed/29745208','PUBMED'); return false;" href="https://www.ncbi.nlm.nih.gov/pubmed/29745208"><span>[Effects of temperature increase on <span class="hlt">zooplankton</span> size spectra in thermal discharge seawaters near a power plant, China].</span></a></p> <p><a target="_blank" href="https://www.ncbi.nlm.nih.gov/entrez/query.fcgi?DB=pubmed">PubMed</a></p> <p>Yu, Jing; Zhu, Yi Feng; Dai, Mei Xia; Lin, Xia; Mao, Shuo Qian</p> <p>2017-05-18</p> <p>Utilizing the plankton 1 (505 Μm), 2 (160 Μm), 3 (77 Μm) nets to seasonally collect <span class="hlt">zooplankton</span> samples at 10 stations and the corresponding abundance data was obtained. Based on individual <span class="hlt">zooplankton</span> biovolume, size groups were classified to test the changes in spatiotemporal characteristics of both Sheldon and normalized biovolume size spectra in thermal discharge seawaters near the Guohua Power Plant, so as to explore the effects of temperature increase on <span class="hlt">zooplankton</span> size spectra in the seawaters. The results showed that the individual biovolume of <span class="hlt">zooplankton</span> ranged from 0.00012 to 127.0 mm 3 ·ind -1 , which could be divided into 21 size groups, and corresponding logarithmic ranges were from -13.06 to 6.99. According to Sheldon size spectra, the predominant species to form main peaks of the size spectrum in different months were Copepodite larvae, Centropages mcmurrichi, Calanus sinicus, fish larvae, Sagitta bedoti, Sagitta nagae and Pleurobrachia globosa, and minor peaks mostly consisted of individuals with smaller larvae, Cyclops and Paracalanus aculeatus. In different warming sections, Copepodite larvae, fish eggs and Cyclops were mostly unaffected by the temperature increase, while the macrozooplankton such as S. bedoti, S. nagae, P. globosa, C. sinicus and Beroe cucumis had an obvious tendency to avoid the outfall of the power plant. Based on the results of normalized size spectra, the intercepts from low to high occurred in November, February, May and August, respectively. At the same time, the minimum slope was found in February, and similarly bigger slopes were observed in May and August. These results indicated that the proportion of small <span class="hlt">zooplankton</span> was highest in February, while the proportions of the meso- and macro-<span class="hlt">zooplankton</span> were relatively high in May and August. Among different sections, the slope in the 0.2 km section was minimum, which increased with the increase of section distance to the outfall. The result obviously demonstrated</p> </li> <li> <p><a target="_blank" onclick="trackOutboundLink('http://adsabs.harvard.edu/abs/2007PrOce..75...42L','NASAADS'); return false;" href="http://adsabs.harvard.edu/abs/2007PrOce..75...42L"><span>Coherence of long-term variations of <span class="hlt">zooplankton</span> in two sectors of the California Current System</span></a></p> <p><a target="_blank" href="http://adsabs.harvard.edu/abstract_service.html">NASA Astrophysics Data System (ADS)</a></p> <p>Lavaniegos, Bertha E.; Ohman, Mark D.</p> <p>2007-10-01</p> <p>We analyzed long-term (56-year) variations in springtime biomass of the <span class="hlt">zooplankton</span> of the California Current System from two primary regions sampled by CalCOFI: Southern California (SC) and Central California (CC) waters. All organisms were enumerated from the plankton samples and converted to organic carbon biomass using length-carbon relationships, then aggregated into 19 major taxa. Planktonic copepods dominate the carbon biomass in both SC (59%) and CC (46%), followed by euphausiids (18% and 25% of mean biomass in SC and CC, respectively). Pelagic tunicates, especially salps and doliolids, constituted a higher fraction of the biomass in CC (13%) than in SC (5%). There was no long-term trend detectable in total <span class="hlt">zooplankton</span> carbon biomass, in marked contrast to a decline in <span class="hlt">zooplankton</span> displacement volume in both regions. The difference between these biomass metrics is accounted for by a long-term decline in pelagic tunicates (particularly salps), which have a relatively high ratio of biovolume:carbon. The decline in pelagic tunicates was accompanied by a long-term increase in water column density stratification. No other taxa showed a decline over the duration of the study, apart from salps and pyrosomes in SC and doliolids in CC. Some <span class="hlt">zooplankton</span> taxa showed compensatory increases over the same time period (ostracods, large decapods, and calycophoran siphonophores in both SC and CC; appendicularians and polychaetes in SC). Two tests for ecosystem shifts, a sequential algorithm and the cumulative sum of anomalies (CuSum) approach, failed to detect changes in 1976-1977 in total carbon biomass, displacement volume, or most individual major taxa, suggesting that aggregated biomass is an insensitive indicator of climate forcing. In contrast, both techniques revealed a cluster of step-like changes associated with the La Niña of 1999. The major El Niño’s in the past half century have consistently depressed total <span class="hlt">zooplankton</span> biomass and biomass of many major taxa</p> </li> <li> <p><a target="_blank" onclick="trackOutboundLink('https://www.pubmedcentral.nih.gov/articlerender.fcgi?tool=pmcentrez&artid=3271926','PMC'); return false;" href="https://www.pubmedcentral.nih.gov/articlerender.fcgi?tool=pmcentrez&artid=3271926"><span>Bacterial bioluminescence as a lure for marine <span class="hlt">zooplankton</span> and fish</span></a></p> <p><a target="_blank" href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?DB=pmc">PubMed Central</a></p> <p>Zarubin, Margarita; Belkin, Shimshon; Ionescu, Michael; Genin, Amatzia</p> <p>2012-01-01</p> <p>The benefits of bioluminescence for nonsymbiotic marine bacteria have not been elucidated fully. One of the most commonly cited explanations, proposed more than 30 y ago, is that bioluminescence augments the propagation and dispersal of bacteria by attracting fish to consume the luminous material. This hypothesis, based mostly on the prevalence of luminous bacteria in fish guts, has not been tested experimentally. Here we show that <span class="hlt">zooplankton</span> that contacts and feeds on the luminescent bacterium Photobacterium leiognathi starts to glow, and demonstrate by video recordings that glowing individuals are highly vulnerable to predation by nocturnal fish. Glowing bacteria thereby are transferred to the nutritious guts of fish and <span class="hlt">zooplankton</span>, where they survive digestion and gain effective means for growth and dispersal. Using bioluminescence as bait appears to be highly beneficial for marine bacteria, especially in food-deprived environments of the deep sea. PMID:22203999</p> </li> <li> <p><a target="_blank" onclick="trackOutboundLink('http://adsabs.harvard.edu/abs/2016AGUOSME24F0772R','NASAADS'); return false;" href="http://adsabs.harvard.edu/abs/2016AGUOSME24F0772R"><span>How Do Density Fronts Interact with <span class="hlt">Zooplankton</span> Distributions to Create Baleen Whale Prey-Fields in Roseway Basin?</span></a></p> <p><a target="_blank" href="http://adsabs.harvard.edu/abstract_service.html">NASA Astrophysics Data System (ADS)</a></p> <p>Ruckdeschel, G.; Ross, T.; Davies, K. T. A.</p> <p>2016-02-01</p> <p>On the Scotian Shelf in the northwest Atlantic, Roseway Basin is a feeding ground for several species of large baleen whales, including the highly endangered North Atlantic right whale. In this habitat, aggregations of <span class="hlt">zooplankton</span> must be present at concentrations high enough for baleen whales to obtain an energetic benefit. Regions of highly concentrated <span class="hlt">zooplankton</span> are formed within the habitat through various biophysical interactions, such as fontal accumulation and retention. In Roseway Basin, humpback and fin whales prey on accumulated euphausiids, while right and sei whales forage for deep layers of Calanoid copepods. Right whales are found most often along the southeastern basin margin in Roseway, and this is also where density fronts occur and are associated with <span class="hlt">zooplankton</span> patches that can form and disaggregate at tidal scales. The temporal persistence and biophysical mechanisms behind the observed interactions of <span class="hlt">zooplankton</span> and frontal features have not been assessed. To understand how density fronts impact <span class="hlt">zooplankton</span> distributions at the scale of feeding whales, we deployed Slocum gliders equipped with conductivity-temperature-depth sensors and echosounders in a series of cross-isobath transects along the sloped southeastern margin of Roseway Basin during August to November 2015. By looking for the presence of density fronts that are also regions of elevated acoustic backscatter (primarily from copepods and euphausiids) and quantifying their persistence over time, we aim to determine how these biophysical interactions create whale prey-fields.</p> </li> <li> <p><a target="_blank" onclick="trackOutboundLink('https://www.ncbi.nlm.nih.gov/pubmed/16161666','PUBMED'); return false;" href="https://www.ncbi.nlm.nih.gov/pubmed/16161666"><span>Comparison of airborne lidar measurements with 420 kHz echo-sounder measurements of <span class="hlt">zooplankton</span>.</span></a></p> <p><a target="_blank" href="https://www.ncbi.nlm.nih.gov/entrez/query.fcgi?DB=pubmed">PubMed</a></p> <p>Churnside, James H; Thorne, Richard E</p> <p>2005-09-10</p> <p>Airborne lidar has the potential to survey large areas quickly and at a low cost per kilometer along a survey line. For this reason, we investigated the performance of an airborne lidar for surveys of <span class="hlt">zooplankton</span>. In particular, we compared the lidar returns with echo-sounder measurements of <span class="hlt">zooplankton</span> in Prince William Sound, Alaska. Data from eight regions of the Sound were compared, and the correlation between the two methods was 0.78. To obtain this level of agreement, a threshold was applied to the lidar return to remove the effects of scattering from phytoplankton.</p> </li> <li> <p><a target="_blank" onclick="trackOutboundLink('https://www.ncbi.nlm.nih.gov/pubmed/23936054','PUBMED'); return false;" href="https://www.ncbi.nlm.nih.gov/pubmed/23936054"><span>Lack of congruence in species diversity indices and <span class="hlt">community</span> structures of planktonic groups based on local environmental factors.</span></a></p> <p><a target="_blank" href="https://www.ncbi.nlm.nih.gov/entrez/query.fcgi?DB=pubmed">PubMed</a></p> <p>Doi, Hideyuki; Chang, Kwang-Hyeon; Nishibe, Yuichiro; Imai, Hiroyuki; Nakano, Shin-ichi</p> <p>2013-01-01</p> <p>The importance of analyzing the determinants of biodiversity and <span class="hlt">community</span> <span class="hlt">composition</span> by using multiple trophic levels is well recognized; however, relevant data are lacking. In the present study, we investigated variations in species diversity indices and <span class="hlt">community</span> structures of the plankton taxonomic groups-<span class="hlt">zooplankton</span>, rotifers, ciliates, and phytoplankton-under a range of local environmental factors in pond ecosystems. For each planktonic group, we estimated the species diversity index by using linear models and analyzed the <span class="hlt">community</span> structure by using canonical correspondence analysis. We showed that the species diversity indices and <span class="hlt">community</span> structures varied among the planktonic groups and according to local environmental factors. The observed lack of congruence among the planktonic groups may have been caused by niche competition between groups with similar trophic guilds or by weak trophic interactions. Our findings highlight the difficulty of predicting total biodiversity within a system, based upon a single taxonomic group. Thus, to conserve the biodiversity of an ecosystem, it is crucial to consider variations in species diversity indices and <span class="hlt">community</span> structures of different taxonomic groups, under a range of local conditions.</p> </li> <li> <p><a target="_blank" onclick="trackOutboundLink('https://www.pubmedcentral.nih.gov/articlerender.fcgi?tool=pmcentrez&artid=4424621','PMC'); return false;" href="https://www.pubmedcentral.nih.gov/articlerender.fcgi?tool=pmcentrez&artid=4424621"><span>Night-time lighting alters the <span class="hlt">composition</span> of marine epifaunal <span class="hlt">communities</span></span></a></p> <p><a target="_blank" href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?DB=pmc">PubMed Central</a></p> <p>Davies, Thomas W.; Coleman, Matthew; Griffith, Katherine M.; Jenkins, Stuart R.</p> <p>2015-01-01</p> <p>Marine benthic <span class="hlt">communities</span> face multiple anthropogenic pressures that compromise the future of some of the most biodiverse and functionally important ecosystems in the world. Yet one of the pressures these ecosystems face, night-time lighting, remains unstudied. Light is an important cue in guiding the settlement of invertebrate larvae, and altering natural regimes of nocturnal illumination could modify patterns of recruitment among sessile epifauna. We present the first evidence of night-time lighting changing the <span class="hlt">composition</span> of temperate epifaunal marine invertebrate <span class="hlt">communities</span>. Illuminating settlement surfaces with white light-emitting diode lighting at night, to levels experienced by these <span class="hlt">communities</span> locally, both inhibited and encouraged the colonization of 39% of the taxa analysed, including three sessile and two mobile species. Our results indicate that ecological light pollution from coastal development, shipping and offshore infrastructure could be changing the <span class="hlt">composition</span> of marine epifaunal <span class="hlt">communities</span>. PMID:25926694</p> </li> <li> <p><a target="_blank" onclick="trackOutboundLink('https://www.pubmedcentral.nih.gov/articlerender.fcgi?tool=pmcentrez&artid=4664400','PMC'); return false;" href="https://www.pubmedcentral.nih.gov/articlerender.fcgi?tool=pmcentrez&artid=4664400"><span>Predation on the Invasive Copepod, Pseudodiaptomus forbesi, and Native <span class="hlt">Zooplankton</span> in the Lower Columbia River: An Experimental Approach to Quantify Differences in Prey-Specific Feeding Rates</span></a></p> <p><a target="_blank" href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?DB=pmc">PubMed Central</a></p> <p>Adams, Jesse B.; Bollens, Stephen M.; Bishop, John G.</p> <p>2015-01-01</p> <p>Invasive planktonic crustaceans have become a prominent feature of aquatic <span class="hlt">communities</span> worldwide, yet their effects on food webs are not well known. The Asian calanoid copepod, Pseudodiaptomus forbesi, introduced to the Columbia River Estuary approximately 15 years ago, now dominates the late-summer <span class="hlt">zooplankton</span> <span class="hlt">community</span>, but its use by native aquatic predators is unknown. We investigated whether three species of planktivorous fishes (chinook salmon, three-spined stickleback, and northern pikeminnow) and one species of mysid exhibited higher feeding rates on native copepods and cladocerans relative to P. forbesi by conducting `single-prey’ feeding experiments and, additionally, examined selectivity for prey types with `two-prey’ feeding experiments. In single-prey experiments individual predator species showed no difference in feeding rates on native cyclopoid copepods (Cyclopidae spp.) relative to invasive P. forbesi, though wild-collected predators exhibited higher feeding rates on cyclopoids when considered in aggregate. In two-prey experiments, chinook salmon and northern pikeminnow both strongly selected native cladocerans (Daphnia retrocurva) over P. forbesi, and moreover, northern pikeminnow selected native Cyclopidae spp. over P. forbesi. On the other hand, in two-prey experiments, chinook salmon, three-spined stickleback and mysids were non- selective with respect to feeding on native cyclopoid copepods versus P. forbesi. Our results indicate that all four native predators in the Columbia River Estuary can consume the invasive copepod, P. forbesi, but that some predators select for native <span class="hlt">zooplankton</span> over P. forbesi, most likely due to one (or both) of two possible underlying casual mechanisms: 1) differential taxon-specific prey motility and escape responses (calanoids > cyclopoids > daphnids) or 2) the invasive status of the <span class="hlt">zooplankton</span> prey resulting in naivety, and thus lower feeding rates, of native predators feeding on invasive prey. PMID</p> </li> <li> <p><a target="_blank" onclick="trackOutboundLink('http://adsabs.harvard.edu/abs/1985JGR....90.8871D','NASAADS'); return false;" href="http://adsabs.harvard.edu/abs/1985JGR....90.8871D"><span>Macrozooplankton biomass in a warm-core Gulf Stream ring: Time series changes in size structure, taxonomic <span class="hlt">composition</span>, and vertical distribution</span></a></p> <p><a target="_blank" href="http://adsabs.harvard.edu/abstract_service.html">NASA Astrophysics Data System (ADS)</a></p> <p>Davis, Cabell S.; Wiebe, Peter H.</p> <p>1985-01-01</p> <p>Macrozooplankton size structure and taxonomic <span class="hlt">composition</span> in warm-core ring 82B was examined from a time series (March, April, June) of ring center MOCNESS (1 m) samples. Size distributions of 15 major taxonomic groups were determined from length measurements digitized from silhouette photographs of the samples. Silhouette digitization allows rapid quantification of <span class="hlt">Zooplankton</span> size structure and taxonomic <span class="hlt">composition</span>. Length/weight regressions, determined for each taxon, were used to partition the biomass (displacement volumes) of each sample among the major taxonomic groups. <span class="hlt">Zooplankton</span> taxonomic <span class="hlt">composition</span> and size structure varied with depth and appeared to coincide with the hydrographic structure of the ring. In March and April, within the thermostad region of the ring, smaller herbivorous/omnivorous <span class="hlt">Zooplankton</span>, including copepods, crustacean larvae, and euphausiids, were dominant, whereas below this region, larger carnivores, such as medusae, ctenophores, fish, and decapods, dominated. Copepods were generally dominant in most samples above 500 m. Total macrozooplankton abundance and biomass increased between March and April, primarily because of increases in herbivorous taxa, including copepods, crustacean larvae, and larvaceans. A marked increase in total macrozooplankton abundance and biomass between April and June was characterized by an equally dramatic shift from smaller herbivores (1.0-3.0 mm) in April to large herbivores (5.0-6.0 mm) and carnivores (>15 mm) in June. Species identifications made directly from the samples suggest that changes in trophic structure resulted from seeding type immigration and subsequent in situ population growth of Slope Water <span class="hlt">zooplankton</span> species.</p> </li> <li> <p><a target="_blank" onclick="trackOutboundLink('http://adsabs.harvard.edu/abs/2016DSRII.131..189J','NASAADS'); return false;" href="http://adsabs.harvard.edu/abs/2016DSRII.131..189J"><span>The <span class="hlt">zooplankton</span> food web under East Antarctic pack ice - A stable isotope study</span></a></p> <p><a target="_blank" href="http://adsabs.harvard.edu/abstract_service.html">NASA Astrophysics Data System (ADS)</a></p> <p>Jia, Zhongnan; Swadling, Kerrie M.; Meiners, Klaus M.; Kawaguchi, So; Virtue, Patti</p> <p>2016-09-01</p> <p>Understanding how sea ice serves <span class="hlt">zooplankton</span> species during the food-limited season is crucial information to evaluate the potential responses of pelagic food webs to changes in sea-ice conditions in the Southern Ocean. Stable isotope analyses (13C/12C and 15N/14N) were used to compare the dietary preferences and trophic relationships of major <span class="hlt">zooplankton</span> species under pack ice during two winter-spring transitions (2007 and 2012). During sampling, furcilia of Euphausia superba demonstrated dietary plasticity between years, herbivory when feeding on sea-ice biota, and with a more heterotrophic diet when feeding from both the sea ice and the water column. Carbon isotope signatures suggested that the pteropod Limacina helicina, small copepods Oithona spp., ostracods and amphipods relied heavily on sea-ice biota. Post larval E. superba and omnivorous krill Thysanoessa macrura consumed both water column and ice biota, but further investigations are needed to estimate the contribution from each source. Large copepods and chaetognaths overwintered on a water column-based diet. Our study suggests that warm and permeable sea ice is more likely to provide food for <span class="hlt">zooplankton</span> species under the ice than the colder ice.</p> </li> <li> <p><a target="_blank" onclick="trackOutboundLink('https://www.pubmedcentral.nih.gov/articlerender.fcgi?tool=pmcentrez&artid=1682011','PMC'); return false;" href="https://www.pubmedcentral.nih.gov/articlerender.fcgi?tool=pmcentrez&artid=1682011"><span>Rapid decay of tree-<span class="hlt">community</span> <span class="hlt">composition</span> in Amazonian forest fragments</span></a></p> <p><a target="_blank" href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?DB=pmc">PubMed Central</a></p> <p>Laurance, William F.; Nascimento, Henrique E. M.; Laurance, Susan G.; Andrade, Ana; Ribeiro, José E. L. S.; Giraldo, Juan Pablo; Lovejoy, Thomas E.; Condit, Richard; Chave, Jerome; Harms, Kyle E.; D'Angelo, Sammya</p> <p>2006-01-01</p> <p>Forest fragmentation is considered a greater threat to vertebrates than to tree <span class="hlt">communities</span> because individual trees are typically long-lived and require only small areas for survival. Here we show that forest fragmentation provokes surprisingly rapid and profound alterations in Amazonian tree-<span class="hlt">community</span> <span class="hlt">composition</span>. Results were derived from a 22-year study of exceptionally diverse tree <span class="hlt">communities</span> in 40 1-ha plots in fragmented and intact forests, which were sampled repeatedly before and after fragment isolation. Within these plots, trajectories of change in abundance were assessed for 267 genera and 1,162 tree species. Abrupt shifts in floristic <span class="hlt">composition</span> were driven by sharply accelerated tree mortality and recruitment within ≈100 m of fragment margins, causing rapid species turnover and population declines or local extinctions of many large-seeded, slow-growing, and old-growth taxa; a striking increase in a smaller set of disturbance-adapted and abiotically dispersed species; and significant shifts in tree size distributions. Even among old-growth trees, species <span class="hlt">composition</span> in fragments is being restructured substantially, with subcanopy species that rely on animal seed-dispersers and have obligate outbreeding being the most strongly disadvantaged. These diverse changes in tree <span class="hlt">communities</span> are likely to have wide-ranging impacts on forest architecture, canopy-gap dynamics, plant–animal interactions, and forest carbon storage. PMID:17148598</p> </li> </ol> <div class="pull-right"> <ul class="pagination"> <li><a href="#" onclick='return showDiv("page_1");'>«</a></li> <li><a href="#" onclick='return showDiv("page_16");'>16</a></li> <li><a href="#" onclick='return showDiv("page_17");'>17</a></li> <li class="active"><span>18</span></li> <li><a href="#" onclick='return showDiv("page_19");'>19</a></li> <li><a href="#" onclick='return showDiv("page_20");'>20</a></li> <li><a href="#" onclick='return showDiv("page_25");'>»</a></li> </ul> </div> </div><!-- col-sm-12 --> </div><!-- row --> </div><!-- page_18 --> <div id="page_19" class="hiddenDiv"> <div class="row"> <div class="col-sm-12"> <div class="pull-right"> <ul class="pagination"> <li><a href="#" onclick='return showDiv("page_1");'>«</a></li> <li><a href="#" onclick='return showDiv("page_17");'>17</a></li> <li><a href="#" onclick='return showDiv("page_18");'>18</a></li> <li class="active"><span>19</span></li> <li><a href="#" onclick='return showDiv("page_20");'>20</a></li> <li><a href="#" onclick='return showDiv("page_21");'>21</a></li> <li><a href="#" onclick='return showDiv("page_25");'>»</a></li> </ul> </div> </div> </div> <div class="row"> <div class="col-sm-12"> <ol class="result-class" start="361"> <li> <p><a target="_blank" onclick="trackOutboundLink('http://adsabs.harvard.edu/abs/2012PrOce.103...80M','NASAADS'); return false;" href="http://adsabs.harvard.edu/abs/2012PrOce.103...80M"><span>Implementation of the <span class="hlt">zooplankton</span> functional response in plankton models: State of the art, recent challenges and future directions</span></a></p> <p><a target="_blank" href="http://adsabs.harvard.edu/abstract_service.html">NASA Astrophysics Data System (ADS)</a></p> <p>Morozov, Andrew; Poggiale, Jean-Christophe; Cordoleani, Flora</p> <p>2012-09-01</p> <p>The conventional way of describing grazing in plankton models is based on a <span class="hlt">zooplankton</span> functional response framework, according to which the consumption rate is computed as the product of a certain function of food (the functional response) and the density/biomass of herbivorous <span class="hlt">zooplankton</span>. A large amount of literature on experimental feeding reports the existence of a <span class="hlt">zooplankton</span> functional response in microcosms and small mesocosms, which goes a long way towards explaining the popularity of this framework both in mean-field (e.g. NPZD models) and spatially resolved models. On the other hand, the complex foraging behaviour of <span class="hlt">zooplankton</span> (feeding cycles) as well as spatial heterogeneity of food and grazer distributions (plankton patchiness) across time and space scales raise questions as to the existence of a functional response of herbivores in vivo. In the current review, we discuss limitations of the ‘classical’ <span class="hlt">zooplankton</span> functional response and consider possible ways to amend this framework to cope with the complexity of real planktonic ecosystems. Our general conclusion is that although the functional response of herbivores often does not exist in real ecosystems (especially in the form observed in the laboratory), this framework can be rather useful in modelling - but it does need some amendment which can be made based on various techniques of model reduction. We also show that the shape of the functional response depends on the spatial resolution (‘frame’) of the model. We argue that incorporating foraging behaviour and spatial heterogeneity in plankton models would not necessarily require the use of individual based modelling - an approach which is now becoming dominant in the literature. Finally, we list concrete future directions and challenges and emphasize the importance of a closer collaboration between plankton biologists and modellers in order to make further progress towards better descriptions of <span class="hlt">zooplankton</span> grazing.</p> </li> <li> <p><a target="_blank" onclick="trackOutboundLink('http://www.dtic.mil/docs/citations/ADA630079','DTIC-ST'); return false;" href="http://www.dtic.mil/docs/citations/ADA630079"><span>Development and Applications of Technology for Sensing <span class="hlt">Zooplankton</span></span></a></p> <p><a target="_blank" href="http://www.dtic.mil/">DTIC Science & Technology</a></p> <p></p> <p>2003-09-30</p> <p><span class="hlt">zooplankton</span>-like particles. WORK COMPLETED In support of our first objective, in prior years we occupied sites in both East and West Sound at Orcas ...Island in northern Puget Sound , WA. We have also made deployments at four sites on open linear coasts, including one just north of Oceanside, CA (Red...layers. Multi-static, multi-frequency methods Most active bioacoustical methods in oceanography exclusively utilize the sound that is scattered</p> </li> <li> <p><a target="_blank" onclick="trackOutboundLink('http://adsabs.harvard.edu/abs/2016AGUOSIS13A..04O','NASAADS'); return false;" href="http://adsabs.harvard.edu/abs/2016AGUOSIS13A..04O"><span>Zooglider - an Autonomous Vehicle for Optical and Acoustic Sensing of Marine <span class="hlt">Zooplankton</span></span></a></p> <p><a target="_blank" href="http://adsabs.harvard.edu/abstract_service.html">NASA Astrophysics Data System (ADS)</a></p> <p>Ohman, M. D.; Davis, R. E.; Sherman, J. T.; Grindley, K.; Whitmore, B. M.</p> <p>2016-02-01</p> <p>We will present results from early sea trials of the Zooglider, an autonomous <span class="hlt">zooplankton</span> glider designed and built by the Instrument Development Group at Scripps. The Zooglider is built upon a modified Spray glider and includes a low power camera with telecentric lens and a custom dual frequency sonar (200/1000 kHz). The imaging system quantifies <span class="hlt">zooplankton</span> as they flow through a sampling tunnel within a well-defined sampling volume. The maximum operating depth is 500 m. Other sensors include a pumped CTD and Chl-a fluorometer. The Zooglider permits in situ measurements of mesozooplankton distributions and three dimensional orientation in relation to other biotic and physical properties of the ocean water column. Zooglider development is supported by the Gordon and Betty Moore Foundation.</p> </li> <li> <p><a target="_blank" onclick="trackOutboundLink('http://adsabs.harvard.edu/abs/2017AGUFM.H53G1546V','NASAADS'); return false;" href="http://adsabs.harvard.edu/abs/2017AGUFM.H53G1546V"><span>Storm-scale dynamics of bacterial <span class="hlt">community</span> <span class="hlt">composition</span> in throughfall and stemflow</span></a></p> <p><a target="_blank" href="http://adsabs.harvard.edu/abstract_service.html">NASA Astrophysics Data System (ADS)</a></p> <p>Van Stan, J. T., II; Teachey, M. E.; Pound, P.; Ottesen, E. A.</p> <p>2017-12-01</p> <p>Transport of bacteria between ecosystem spheres can significantly affect microbially-mediated biogeochemical processes. During rainfall, there is a large, temporally-concentrated exchange of bacteria between the forest phyllosphere and the pedosphere by rain dripping from canopy surfaces, as throughfall (TF), and draining to the stem, as stemflow (SF). Many phyllosphere bacteria possibly transported by TF and SF have been linked to important litter and soil processes (like cyanobacteria and actinobacteria). Despite this, no work has applied high throughput DNA sequencing to assess the <span class="hlt">community</span> <span class="hlt">composition</span> of bacteria transported by TF and SF. We characterized bacterial <span class="hlt">community</span> <span class="hlt">composition</span> for TF and SF from an epiphyte-laden (Tillandsia usneoides L., Spanish moss) southern live oak (Quercus virginiana) forest in southeastern Georgia (USA) to address two hypotheses: that bacterial <span class="hlt">community</span> <span class="hlt">composition</span> will differ between (1) TF and SF, and (2) TF sampled beneath bare and epiphyte-laden canopy. Variability in family-level bacterial abundance, Bray-Curtis dissimilarity, and Shannon diversity index was greater between storms than between net rainfall fluxes. In fact, TF and SF bacterial <span class="hlt">communities</span> were relatively similar for individual storms and may be driven by pre-storm atmospheric deposition rather than the <span class="hlt">communities</span> affixed to leaves, bark, and epiphyte surfaces.</p> </li> <li> <p><a target="_blank" onclick="trackOutboundLink('http://www.dtic.mil/docs/citations/ADA573551','DTIC-ST'); return false;" href="http://www.dtic.mil/docs/citations/ADA573551"><span>Field Demonstration of a Broadband Acoustical Backscattering System Mounted on a REMUS-100 for Inferences of <span class="hlt">Zooplankton</span> Size and Abundance</span></a></p> <p><a target="_blank" href="http://www.dtic.mil/">DTIC Science & Technology</a></p> <p></p> <p>2012-09-30</p> <p>particularly high, and that numerical abundance of <span class="hlt">zooplankton</span> was dominated by small copepods that were relatively evenly distributed throughout the water...column. Elastic-shelled pterapods and <span class="hlt">zooplankton</span> with gas-inclusions were not observed at significant abundances. Small copepods were distributed</p> </li> <li> <p><a target="_blank" onclick="trackOutboundLink('http://adsabs.harvard.edu/abs/2018JOL....36..376Z','NASAADS'); return false;" href="http://adsabs.harvard.edu/abs/2018JOL....36..376Z"><span>Size-dependent responses of <span class="hlt">zooplankton</span> to submerged macrophyte restoration in a subtropical shallow lake</span></a></p> <p><a target="_blank" href="http://adsabs.harvard.edu/abstract_service.html">NASA Astrophysics Data System (ADS)</a></p> <p>Zeng, Lei; He, Feng; Zhang, Yi; Liu, Biyun; Dai, Zhigang; Zhou, Qiaohong; Wu, Zhenbin</p> <p>2018-03-01</p> <p>To explore the size-dependent responses of <span class="hlt">zooplankton</span> to submerged macrophyte restoration, we collected macrophyte, <span class="hlt">zooplankton</span> and water quality samples seasonally from a subtropical shallow lake from 2010 to 2012. Special attention was given to changes in rotifers and crustaceans (cladocerans and copepods). The rotifers were grouped into three size classes (<200 μm, 200 μm-400 μm, >400 μm) to explore their size-related responses to macrophyte restoration. The results showed that during the restoration, the annual mean biomass and macrophyte coverage increased significantly from 0 to 637 g/m2 and 0 to 27%, respectively. In response, the density and biomass of crustaceans and the crustacean-to-rotifer ratio increased significantly, while the rotifer density decreased significantly. Moreover, rotifers showed significant sizedependent responses to macrophyte restoration. Specially, rotifers <400 μm were significantly suppressed, while those ≥400 μm were significantly encouraged. Overall, the population of large-sized <span class="hlt">zooplankton</span> tended to boom, while that of small rotifers was inhibited during macrophyte restoration. Redundancy analysis (RDA) revealed positive correlations between macrophytes and crustaceans, rotifers and COD or Chl- a, but negative correlations between macrophytes and COD or Chl- a, and between crustaceans and Chl- a. Moreover, the results indicate that increased predation on phytoplankton by large-sized <span class="hlt">zooplankton</span> might be an important mechanism for macrophyte restoration during development of aquatic ecosystems, and that this mechanism played a very important role in promoting the formation of a clear-water state in subtropical shallow lakes.</p> </li> <li> <p><a target="_blank" onclick="trackOutboundLink('https://www.ncbi.nlm.nih.gov/pubmed/27418518','PUBMED'); return false;" href="https://www.ncbi.nlm.nih.gov/pubmed/27418518"><span>Urban greenness influences airborne bacterial <span class="hlt">community</span> <span class="hlt">composition</span>.</span></a></p> <p><a target="_blank" href="https://www.ncbi.nlm.nih.gov/entrez/query.fcgi?DB=pubmed">PubMed</a></p> <p>Mhuireach, Gwynne; Johnson, Bart R; Altrichter, Adam E; Ladau, Joshua; Meadow, James F; Pollard, Katherine S; Green, Jessica L</p> <p>2016-11-15</p> <p>Urban green space provides health benefits for city dwellers, and new evidence suggests that microorganisms associated with soil and vegetation could play a role. While airborne microorganisms are ubiquitous in urban areas, the influence of nearby vegetation on airborne microbial <span class="hlt">communities</span> remains poorly understood. We examined airborne microbial <span class="hlt">communities</span> in parks and parking lots in Eugene, Oregon, using high-throughput sequencing of the bacterial 16S rRNA gene on the Illumina MiSeq platform to identify bacterial taxa, and GIS to measure vegetation cover in buffer zones of different diameters. Our goal was to explore variation among highly vegetated (parks) versus non-vegetated (parking lots) urban environments. A secondary objective was to evaluate passive versus active collection methods for outdoor airborne microbial sampling. Airborne bacterial <span class="hlt">communities</span> from five parks were different from those of five parking lots (p=0.023), although alpha diversity was similar. Direct gradient analysis showed that the proportion of vegetated area within a 50m radius of the sampling station explained 15% of the variation in bacterial <span class="hlt">community</span> <span class="hlt">composition</span>. A number of key taxa, including several Acidobacteriaceae were substantially more abundant in parks, while parking lots had higher relative abundance of Acetobacteraceae. Parks had greater beta diversity than parking lots, i.e. individual parks were characterized by unique bacterial signatures, whereas parking lot <span class="hlt">communities</span> tended to be similar to each other. Although parks and parking lots were selected to form pairs of nearby sites, spatial proximity did not appear to affect <span class="hlt">compositional</span> similarity. Our results also showed that passive and active collection methods gave comparable results, indicating the "settling dish" method is effective for outdoor airborne sampling. This work sets a foundation for understanding how urban vegetation may impact microbial <span class="hlt">communities</span>, with potential implications for designing</p> </li> <li> <p><a target="_blank" onclick="trackOutboundLink('http://adsabs.harvard.edu/abs/2017DSRII.135..168S','NASAADS'); return false;" href="http://adsabs.harvard.edu/abs/2017DSRII.135..168S"><span>Late summer zoogeography of the northern Bering and Chukchi seas</span></a></p> <p><a target="_blank" href="http://adsabs.harvard.edu/abstract_service.html">NASA Astrophysics Data System (ADS)</a></p> <p>Sigler, Michael F.; Mueter, Franz J.; Bluhm, Bodil A.; Busby, Morgan S.; Cokelet, Edward D.; Danielson, Seth L.; Robertis, Alex De; Eisner, Lisa B.; Farley, Edward V.; Iken, Katrin; Kuletz, Kathy J.; Lauth, Robert R.; Logerwell, Elizabeth A.; Pinchuk, Alexei I.</p> <p>2017-01-01</p> <p> assemblages. The gradients in assemblage <span class="hlt">composition</span> were gradual for epibenthic taxa, abrupt for <span class="hlt">zooplankton</span> taxa, and intermediate for pelagic fish/jellyfish and seabird taxa, implying that <span class="hlt">zooplankton</span> assemblage structure is most strongly tied to water mass, epibenthic least, with the other two taxa intermediates. Three <span class="hlt">communities</span> (i.e., cross-assemblage groupings) emerged based on maps of ordination axes and core use areas by taxa; one associated with Alaska Coastal Water (warmer, fresher, nutrient depauperate), second associated with Chirikov Basin and the southern Chukchi Sea (colder, saltier, nutrient rich), and third associated with the northern Chukchi shelf (colder and saltier but not as nutrient rich). Gradients in species <span class="hlt">composition</span> occurred both within and between these <span class="hlt">communities</span>. The Chirikov Basin/southern Chukchi Sea <span class="hlt">community</span> was characterized by distinct <span class="hlt">zooplankton</span> and seabird taxa, but was not strongly associated with distinct pelagic or epibenthic fish and invertebrate taxa. Although comprehensive data were only available for a single year and annual variation may affect the generality of our results, our comprehensive ecosystem survey approach yielded new insights into the ecological relationships (specifically, gradients in assemblage <span class="hlt">composition</span> and identification of <span class="hlt">communities</span>) of this Arctic region.</p> </li> <li> <p><a target="_blank" onclick="trackOutboundLink('https://pubs.usgs.gov/ds/1000/ds1000.pdf','USGSPUBS'); return false;" href="https://pubs.usgs.gov/ds/1000/ds1000.pdf"><span>Benthos and plankton <span class="hlt">community</span> data for selected rivers and harbors along the western Lake Michigan shoreline, 2014</span></a></p> <p><a target="_blank" href="http://pubs.er.usgs.gov/pubs/index.jsp?view=adv">USGS Publications Warehouse</a></p> <p>Scudder Eikenberry, Barbara C.; Burns, Daniel J.; Olds, Hayley T.; Bell, Amanda H.; Mapel, Kassidy T.</p> <p>2016-06-15</p> <p>Benthos (benthic invertebrates) and plankton (<span class="hlt">zooplankton</span> and phytoplankton) <span class="hlt">communities</span> were sampled in 2014 at 10 Wisconsin rivers and harbors, including 4 sites in Great Lakes Areas of Concern and 6 less degraded comparison sites with similar physical and chemical characteristics, including climate, latitude, geology, and land use. Previous U.S. Geological Survey sampling was completed in 2012, but because of ongoing sediment remediation at three of the Areas of Concern (AOCs) and unusually hot and dry conditions in many areas during 2012, additional sampling was added in 2014. Comparable sampling methods were used in 2012 and 2014. Benthos were collected by using Hester-Dendy artificial substrate samplers and <span class="hlt">composite</span> Ponar grab samples of bottom sediment; <span class="hlt">zooplankton</span> were collected by using tows from depth to the surface with a 63-micrometer mesh plankton net; phytoplankton were collected by using whole water samples <span class="hlt">composited</span> from set depth intervals. This report describes the study areas and field sampling methods for 2014, and it presents data on taxonomic identification and abundance of benthos and plankton that can serve as a basis for evaluation of related Beneficial Use Impairments (BUIs) at the AOCs. Physical and chemical data were sampled concurrently (specific conductance, temperature, pH, dissolved oxygen, chlorophyll a, total and volatile suspended solids in water samples; particle size and volatile-on-ignition of sediment in benthic grab samples). The results of field quality assurance-quality control are also presented.</p> </li> <li> <p><a target="_blank" onclick="trackOutboundLink('https://www.ncbi.nlm.nih.gov/pubmed/23906853','PUBMED'); return false;" href="https://www.ncbi.nlm.nih.gov/pubmed/23906853"><span>Trophic transfer of microcystins through the lake pelagic food web: evidence for the role of <span class="hlt">zooplankton</span> as a vector in fish contamination.</span></a></p> <p><a target="_blank" href="https://www.ncbi.nlm.nih.gov/entrez/query.fcgi?DB=pubmed">PubMed</a></p> <p>Sotton, Benoît; Guillard, Jean; Anneville, Orlane; Maréchal, Marjorie; Savichtcheva, Olga; Domaizon, Isabelle</p> <p>2014-01-01</p> <p>An in situ study was performed to investigate the role of <span class="hlt">zooplankton</span> as a vector of microcystins (MCs) from Planktothrix rubescens filaments to fish during a metalimnic bloom of P. rubescens in Lake Hallwil (Switzerland). The concentrations of MCs in P. rubescens and various <span class="hlt">zooplanktonic</span> taxa (filter-feeders and predators) were assessed in different water strata (epi-, meta- and hypolimnion) using replicated sampling over a 24-hour survey. The presence of P. rubescens in the gut content of various <span class="hlt">zooplanktonic</span> taxa (Daphnia, Bosmina and Chaoborus) was verified by targeting the cyanobacterial nucleic acids (DNA). These results highlighted that cyanobacterial cells constitute a part of food resource for herbivorous <span class="hlt">zooplanktonic</span> taxa during metalimnic bloom periods. Furthermore, presence of MCs in Chaoborus larvae highlighted the trophic transfer of MCs between herbivorous <span class="hlt">zooplankton</span> and their invertebrate predators. Our results suggest that <span class="hlt">zooplanktonic</span> herbivores by diel vertical migration (DVM) act as vectors of MCs by encapsulating grazed cyanobacteria. As a consequence, they largely contribute to the contamination of <span class="hlt">zooplanktonic</span> predators, and in fine of zooplanktivorous whitefish. Indeed, we estimated the relative contribution of three preys of the whitefish (i.e. Daphnia, Bosmina and Chaoborus) to diet contamination. We showed that Chaoborus and Daphnia were the highest contributor as MC vectors in the whitefish diet (74.6 and 20.5% of MC-LR equivalent concentrations, respectively). The transfer of MCs across the different trophic compartments follows complex trophic pathways involving various trophic levels whose relative importance in fish contamination might vary at daily and seasonal scale. © 2013.</p> </li> <li> <p><a target="_blank" onclick="trackOutboundLink('https://www.ncbi.nlm.nih.gov/pubmed/21966905','PUBMED'); return false;" href="https://www.ncbi.nlm.nih.gov/pubmed/21966905"><span>Influences of space, soil, nematodes and plants on microbial <span class="hlt">community</span> <span class="hlt">composition</span> of chalk grassland soils.</span></a></p> <p><a target="_blank" href="https://www.ncbi.nlm.nih.gov/entrez/query.fcgi?DB=pubmed">PubMed</a></p> <p>Yergeau, Etienne; Bezemer, T Martijn; Hedlund, Katarina; Mortimer, Simon R; Kowalchuk, George A; Van Der Putten, Wim H</p> <p>2010-08-01</p> <p>Microbial <span class="hlt">communities</span> respond to a variety of environmental factors related to resources (e.g. plant and soil organic matter), habitat (e.g. soil characteristics) and predation (e.g. nematodes, protozoa and viruses). However, the relative contribution of these factors on microbial <span class="hlt">community</span> <span class="hlt">composition</span> is poorly understood. Here, we sampled soils from 30 chalk grassland fields located in three different chalk hill ridges of Southern England, using a spatially explicit sampling scheme. We assessed microbial <span class="hlt">communities</span> via phospholipid fatty acid (PLFA) analyses and PCR-denaturing gradient gel electrophoresis (DGGE) and measured soil characteristics, as well as nematode and plant <span class="hlt">community</span> <span class="hlt">composition</span>. The relative influences of space, soil, vegetation and nematodes on soil microorganisms were contrasted using variation partitioning and path analysis. Results indicate that soil characteristics and plant <span class="hlt">community</span> <span class="hlt">composition</span>, representing habitat and resources, shape soil microbial <span class="hlt">community</span> <span class="hlt">composition</span>, whereas the influence of nematodes, a potential predation factor, appears to be relatively small. Spatial variation in microbial <span class="hlt">community</span> structure was detected at broad (between fields) and fine (within fields) scales, suggesting that microbial <span class="hlt">communities</span> exhibit biogeographic patterns at different scales. Although our analysis included several relevant explanatory data sets, a large part of the variation in microbial <span class="hlt">communities</span> remained unexplained (up to 92% in some analyses). However, in several analyses, significant parts of the variation in microbial <span class="hlt">community</span> structure could be explained. The results of this study contribute to our understanding of the relative importance of different environmental and spatial factors in driving the <span class="hlt">composition</span> of soil-borne microbial <span class="hlt">communities</span>. © 2009 Society for Applied Microbiology and Blackwell Publishing Ltd.</p> </li> <li> <p><a target="_blank" onclick="trackOutboundLink('http://adsabs.harvard.edu/abs/2013CSR....67...23Q','NASAADS'); return false;" href="http://adsabs.harvard.edu/abs/2013CSR....67...23Q"><span>Seasonal and interannual variation in the planktonic <span class="hlt">communities</span> of the northeastern Chukchi Sea during the summer and early fall</span></a></p> <p><a target="_blank" href="http://adsabs.harvard.edu/abstract_service.html">NASA Astrophysics Data System (ADS)</a></p> <p>Questel, Jennifer M.; Clarke, Cheryl; Hopcroft, Russell R.</p> <p>2013-09-01</p> <p>We analyzed the seasonal and interannual variability of the planktonic <span class="hlt">communities</span> in a densely sampled region of the northeastern Chukchi Sea as part of a multidisciplinary ecosystem study from 2008 to 2010. Observations of chlorophyll-a, inorganic macronutrients, and <span class="hlt">zooplankton</span> (using both 150-μm and 505-μm mesh nets) were made within two 900-NM 2 grids (Klondike and Burger) at high spatial resolution three times each in 2008 and 2009, with a third grid (Statoil) sampled twice in 2010. Sea-ice conditions prior to sampling varied notably during the study: seasonal sea ice retreat was earlier and sea-surface temperatures (SSTs) were warmer in 2009 than in 2008, whereas SSTs for 2010 were intermediate between the 2008 and 2009 values. Eighty taxonomic categories of <span class="hlt">zooplankton</span>, including 11 meroplanktonic categories, were recorded, with the greatest diversity found within the copepods (25 species), followed by the cnidarians (11 species). All species are typical for the region and most are seeded from the Bering Sea. A seasonal progression of the <span class="hlt">community</span> structure was apparent over each survey area and was likely influenced by temperature. Cold oceanographic conditions in 2008 likely slowed growth and development of the <span class="hlt">zooplankton</span>, such that holozooplankton abundance averaged 2389 and 106 individuals m-3 and biomass averaged 10.5 and 8.3 mg DW m-3 in the 150- and 505-μm nets, respectively. An early phytoplankton bloom in 2009 apparently supported a <span class="hlt">zooplankton</span> <span class="hlt">community</span> of greater abundance, but moderate biomass, averaging 6842 and 189 individuals m-3, and 16.3 and 7.0 mg DW m-3 in the 150- and 505-μm nets, respectively. Highest <span class="hlt">zooplankton</span> abundance and biomass values among the three years occurred in 2010: 7396 and 198 individuals m-3 and 102.9 and 33.5 mg DW m-3 in the 150- and 505-μm nets, respectively. Holozooplankton biomass changes were driven by increases in large-bodied, lipid-rich copepods. The contribution of meroplankton was substantial in this</p> </li> <li> <p><a target="_blank" onclick="trackOutboundLink('https://www.ncbi.nlm.nih.gov/pubmed/27267715','PUBMED'); return false;" href="https://www.ncbi.nlm.nih.gov/pubmed/27267715"><span>Bacterial <span class="hlt">community</span> <span class="hlt">composition</span> and structure in an Urban River impacted by different pollutant sources.</span></a></p> <p><a target="_blank" href="https://www.ncbi.nlm.nih.gov/entrez/query.fcgi?DB=pubmed">PubMed</a></p> <p>Ibekwe, A Mark; Ma, Jincai; Murinda, Shelton E</p> <p>2016-10-01</p> <p>Microbial <span class="hlt">communities</span> in terrestrial fresh water are diverse and dynamic in <span class="hlt">composition</span> due to different environmental factors. The goal of this study was to undertake a comprehensive analysis of bacterial <span class="hlt">composition</span> along different rivers and creeks and correlate these to land-use practices and pollutant sources. Here we used 454 pyrosequencing to determine the total bacterial <span class="hlt">community</span> <span class="hlt">composition</span>, and bacterial <span class="hlt">communities</span> that are potentially of fecal origin, and of relevance to water quality assessment. The results were analyzed using UniFrac coupled with principal coordinate analysis (PCoA) to compare diversity, abundance, and <span class="hlt">community</span> <span class="hlt">composition</span>. Detrended correspondence analysis (DCA) and canonical correspondence analysis (CCA) were used to correlate bacterial <span class="hlt">composition</span> in streams and creeks to different environmental parameters impacting bacterial <span class="hlt">communities</span> in the sediment and surface water within the watershed. Bacteria were dominated by the phyla Proteobacteria, Bacteroidetes, Acidobacteria, and Actinobacteria, with Bacteroidetes significantly (P<0.001) higher in all water samples than sediment, where as Acidobacteria and Actinobacteria where significantly higher (P<0.05) in all the sediment samples than surface water. Overall results, using the β diversity measures, coupled with PCoA and DCA showed that bacterial <span class="hlt">composition</span> in sediment and surface water was significantly different (P<0.001). Also, there were differences in bacterial <span class="hlt">community</span> <span class="hlt">composition</span> between agricultural runoff and urban runoff based on parsimony tests using 454 pyrosequencing data. Fecal indicator bacteria in surface water along different creeks and channels were significantly correlated with pH (P<0.01), NO2 (P<0.03), and NH4N (P<0.005); and in the sediment with NO3 (P<0.015). Our results suggest that microbial <span class="hlt">community</span> <span class="hlt">compositions</span> were influenced by several environmental factors, and pH, NO2, and NH4 were the major environmental factors driving FIB in surface water</p> </li> <li> <p><a target="_blank" onclick="trackOutboundLink('https://www.fs.usda.gov/treesearch/pubs/39607','TREESEARCH'); return false;" href="https://www.fs.usda.gov/treesearch/pubs/39607"><span>Fire severity mediates climate-driven shifts in understorey <span class="hlt">community</span> <span class="hlt">composition</span> of black spruce stands of interior Alaska</span></a></p> <p><a target="_blank" href="http://www.fs.usda.gov/treesearch/">Treesearch</a></p> <p>Emily L. Bernhardt; Teresa N. Hollingsworth; F. Stuart Chapin</p> <p>2011-01-01</p> <p>Question: How do pre-fire conditions (<span class="hlt">community</span> <span class="hlt">composition</span> and environmental characteristics) and climate-driven disturbance characteristics (fire severity) affect post-fire <span class="hlt">community</span> <span class="hlt">composition</span> in black spruce stands? Location: Northern boreal forest, interior Alaska. Methods: We compared plant <span class="hlt">community</span> <span class="hlt">composition</span> and environmental stand characteristics in 14...</p> </li> <li> <p><a target="_blank" onclick="trackOutboundLink('http://adsabs.harvard.edu/abs/2015JSR....98...24V','NASAADS'); return false;" href="http://adsabs.harvard.edu/abs/2015JSR....98...24V"><span>Does stability in local <span class="hlt">community</span> <span class="hlt">composition</span> depend on temporal variation in rates of dispersal and connectivity?</span></a></p> <p><a target="_blank" href="http://adsabs.harvard.edu/abstract_service.html">NASA Astrophysics Data System (ADS)</a></p> <p>Valanko, Sebastian; Norkko, Joanna; Norkko, Alf</p> <p>2015-04-01</p> <p>In ecology understanding variation in connectivity is central for how biodiversity is maintained. Field studies on dispersal and temporal dynamics in <span class="hlt">community</span> regulating processes are, however, rare. We test the short-term temporal stability in <span class="hlt">community</span> <span class="hlt">composition</span> in a soft-sediment benthic <span class="hlt">community</span> by determining among-sampling interval similarity in <span class="hlt">community</span> <span class="hlt">composition</span>. We relate stability to in situ measures of connectivity (wind, wave, current energy) and rates of dispersal (quantified in different trap types). Waves were an important predictor of when local <span class="hlt">community</span> taxa are most likely to disperse in different trap-types, suggesting that wave energy is important for connectivity in a region. <span class="hlt">Community</span> <span class="hlt">composition</span> at the site was variable and changed stochastically over time. We found changes in <span class="hlt">community</span> <span class="hlt">composition</span> (occurrence, abundance, dominance) to be greater at times when connectivity and rates of dispersal were low. In response to periods of lower connectedness dominant taxa in the local <span class="hlt">community</span> only exhibited change in their relative abundance. In contrast, locally less abundant taxa varied in both their presence, as well as in relative abundance. Constancy in connectivity and rates of dispersal promotes <span class="hlt">community</span> stability and persistence, suggesting that local <span class="hlt">community</span> <span class="hlt">composition</span> will be impacted by changes in the spatial extent over which immigration and emigration operates in the region. Few empirical studies have actually measured dispersal directly in a multi-species context to demonstrate the role it plays in maintaining local <span class="hlt">community</span> structure. Even though our study does not evaluate coexistence over demographic time scales, it importantly demonstrates that dispersal is not only important in initial recruitment or following a disturbance, but also key in maintaining local <span class="hlt">community</span> <span class="hlt">composition</span>.</p> </li> <li> <p><a target="_blank" onclick="trackOutboundLink('https://cfpub.epa.gov/si/si_public_record_report.cfm?dirEntryId=62597&keyword=opc&actType=&TIMSType=+&TIMSSubTypeID=&DEID=&epaNumber=&ntisID=&archiveStatus=Both&ombCat=Any&dateBeginCreated=&dateEndCreated=&dateBeginPublishedPresented=&dateEndPublishedPresented=&dateBeginUpdated=&dateEndUpdated=&dateBeginCompleted=&dateEndCompleted=&personID=&role=Any&journalID=&publisherID=&sortBy=revisionDate&count=50','EPA-EIMS'); return false;" href="https://cfpub.epa.gov/si/si_public_record_report.cfm?dirEntryId=62597&keyword=opc&actType=&TIMSType=+&TIMSSubTypeID=&DEID=&epaNumber=&ntisID=&archiveStatus=Both&ombCat=Any&dateBeginCreated=&dateEndCreated=&dateBeginPublishedPresented=&dateEndPublishedPresented=&dateBeginUpdated=&dateEndUpdated=&dateBeginCompleted=&dateEndCompleted=&personID=&role=Any&journalID=&publisherID=&sortBy=revisionDate&count=50"><span><span class="hlt">ZOOPLANKTON</span> SIZE-SPECTRA AS AN INDICATOR IN GREAT LAKES COASTAL WATERS</span></a></p> <p><a target="_blank" href="http://oaspub.epa.gov/eims/query.page">EPA Science Inventory</a></p> <p></p> <p></p> <p><span class="hlt">Zooplankton</span> size-spectra has the potential to be used as an indicator of ecological condition. Mean size and size-distribution are effected by planktivore pressure and therefore reflect trophic cascade interactions as well as size selective predation. We used an optical plankton ...</p> </li> <li> <p><a target="_blank" onclick="trackOutboundLink('http://adsabs.harvard.edu/abs/2016AGUOSME21B..06B','NASAADS'); return false;" href="http://adsabs.harvard.edu/abs/2016AGUOSME21B..06B"><span>The Influence of Individual Variability on <span class="hlt">Zooplankton</span> Population Dynamics under Different Environmental Conditions</span></a></p> <p><a target="_blank" href="http://adsabs.harvard.edu/abstract_service.html">NASA Astrophysics Data System (ADS)</a></p> <p>Bi, R.; Liu, H.</p> <p>2016-02-01</p> <p>Understanding how biological components respond to environmental changes could be insightful to predict ecosystem trajectories under different climate scenarios. <span class="hlt">Zooplankton</span> are key components of marine ecosystems and changes in their dynamics could have major impact on ecosystem structure. We developed an individual-based model of a common coastal calanoid copepod Acartia tonsa to examine how environmental factors affect <span class="hlt">zooplankton</span> population dynamics and explore the role of individual variability in sustaining population under various environmental conditions consisting of temperature, food concentration and salinity. Total abundance, egg production and proportion of survival were used to measure population success. Results suggested population benefits from high level of individual variability under extreme environmental conditions including unfavorable temperature, salinity, as well as low food concentration, and selection on fast-growers becomes stronger with increasing individual variability and increasing environmental stress. Multiple regression analysis showed that temperature, food concentration, salinity and individual variability have significant effects on survival of A. tonsa population. These results suggest that environmental factors have great influence on <span class="hlt">zooplankton</span> population, and individual variability has important implications for population survivability under unfavorable conditions. Given that marine ecosystems are at risk from drastic environmental changes, understanding how individual variability sustains populations could increase our capability to predict population dynamics in a changing environment.</p> </li> <li> <p><a target="_blank" onclick="trackOutboundLink('http://adsabs.harvard.edu/abs/2017EGUGA..19..835R','NASAADS'); return false;" href="http://adsabs.harvard.edu/abs/2017EGUGA..19..835R"><span>Using a trait-based approach to link microbial <span class="hlt">community</span> <span class="hlt">composition</span> and functioning to soil salinity</span></a></p> <p><a target="_blank" href="http://adsabs.harvard.edu/abstract_service.html">NASA Astrophysics Data System (ADS)</a></p> <p>Rath, Kristin; Fierer, Noah; Rousk, Johannes</p> <p>2017-04-01</p> <p>Our knowledge of the dynamics structuring microbial <span class="hlt">communities</span> and the consequences this has for soil functions is rudimentary. In particular, predictions of the response of microbial <span class="hlt">communities</span> to environmental change and the implications for associated ecosystem processes remain elusive. Understanding how environmental factors structure microbial <span class="hlt">communities</span> and regulate the functions they perform is key to a mechanistic understanding of how biogeochemical cycles respond to environmental change. Soil salinization is an agricultural problem in many parts of the world. The activity of soil microorganisms is reduced in saline soils compared to non-saline soil. However, soil salinity often co-varies with other factors, making it difficult to assign responses of microbial <span class="hlt">communities</span> to direct effects of salinity. A trait-based approach allows us to connect the environmental factor salinity with the responses of microbial <span class="hlt">community</span> <span class="hlt">composition</span> and functioning. Salinity along a salinity gradient serves as a filter for the <span class="hlt">community</span> trait distribution of salt tolerance, selecting for higher salt tolerance at more saline sites. This trait-environment relationship can be used to predict responses of microbial <span class="hlt">communities</span> to environmental change. Our aims were to (i) use salinity along natural salinity gradients as an environmental filter, and (ii) link the resulting filtered trait-distributions of the <span class="hlt">communities</span> (the trait being salt tolerance) to the <span class="hlt">community</span> <span class="hlt">composition</span>. Soil samples were obtained from two replicated salinity gradients along an Australian salt lake, spanning a wide range of soil salinities (0.1 dS m-1 to >50 dS m-1). In one of the two gradients salinity was correlated with pH. <span class="hlt">Community</span> trait distributions for salt tolerance were assessed by establishing dose-dependences for extracted bacterial <span class="hlt">communities</span> using growth rate assays. In addition, functional parameters were measured along the salt gradients. <span class="hlt">Community</span> <span class="hlt">composition</span> of sites was compared</p> </li> <li> <p><a target="_blank" onclick="trackOutboundLink('https://www.ncbi.nlm.nih.gov/pubmed/27670205','PUBMED'); return false;" href="https://www.ncbi.nlm.nih.gov/pubmed/27670205"><span>Modelling the relationship between <span class="hlt">zooplankton</span> biomass and environmental variations in the distribution of 210Po during a one year cycle in northwestern Mediterranean coastal waters.</span></a></p> <p><a target="_blank" href="https://www.ncbi.nlm.nih.gov/entrez/query.fcgi?DB=pubmed">PubMed</a></p> <p>Färber Lorda, Jaime; Tateda, Yutaka; Fowler, Scott W</p> <p>2017-08-01</p> <p>To clarify the relationship between <span class="hlt">zooplankton</span> biomass and the environmental kinetics of the natural radionuclide 210 Po during a one-year period (October 1995 to November 1996) in northwestern Mediterranean coastal waters, a modelling analysis was applied. Using 210 Po concentrations in seawater and <span class="hlt">zooplankton</span>, the 210 Po uptake rate constant from food for <span class="hlt">zooplankton</span> was evaluated using a biokinetics calculation involving the uptake and the excretion rate constants between seawater and <span class="hlt">zooplankton</span>. Using the transfer constants obtained, the 210 Po concentrations in <span class="hlt">zooplankton</span> were reconstructed and validated by observed concentrations. The simulation results were in good agreement with the measured 210 Po concentrations in <span class="hlt">zooplankton</span>. Assuming that 210 Po fecal excretion represents the majority of the excretion of 210 Po from <span class="hlt">zooplankton</span>, the fecal matter associated 210 Po vertical flux was calculated, and compared with the observed vertical fluxes of 210 Po measured in sediment traps. The modelling evaluation showed that fecal pellet vertical transport could not fully explain the observed sinking fluxes of particulate organic matter at 150 m depth, suggesting that other sinking biodetrital aggregates are also important components of the plankton-derived vertical flux of 210 Po. The relationship between 210 Po concentration in seawater and that in rain and dry fallout and their potential effect on 210 Po concentrations in <span class="hlt">zooplankton</span> at this location were also examined. A similar, but diphased trend between 210 Po in <span class="hlt">zooplankton</span> and 210 Po in rain and dry fallout deposition rate was demonstrated. 210 Po concentrations in the dissolved phase of seawater tended to diminish as mean daily rainfall increased suggesting that rain inputs serve as a 210 Po dilution mechanism in seawater at this location. Copyright © 2016 Elsevier Ltd. All rights reserved.</p> </li> <li> <p><a target="_blank" onclick="trackOutboundLink('http://adsabs.harvard.edu/abs/2008DSRII..55.2285M','NASAADS'); return false;" href="http://adsabs.harvard.edu/abs/2008DSRII..55.2285M"><span>Influence of spatial heterogeneity on the type of <span class="hlt">zooplankton</span> functional response: A study based on field observations</span></a></p> <p><a target="_blank" href="http://adsabs.harvard.edu/abstract_service.html">NASA Astrophysics Data System (ADS)</a></p> <p>Morozov, Andrew; Arashkevich, Elena; Reigstad, Marit; Falk-Petersen, Stig</p> <p>2008-10-01</p> <p>Mathematical models of plankton dynamics are sensitive to the choice of type of <span class="hlt">zooplankton</span> functional response, i.e., to how the rate of intake of food varies with the food density. Conventionally, the conclusion on the actual type of functional response for a given <span class="hlt">zooplankton</span> species is made based upon laboratory analysis on experimental feeding. In this paper, we show that such an approach can be too simplistic and misleading. Based on real ocean data obtained from three expeditions of R/V Jan Mayen in the Barents Sea in 2003-2005, we demonstrate that vertical heterogeneity in algal distribution as well as active vertical movement of herbivorous <span class="hlt">zooplankton</span> can modify the type of trophic response completely. In particular, we found that the rate of average intake of algae by Calanus glacialis exhibits a Holling type III response, instead of Holling type I or II found previously in laboratory experiments. We argue that this conceptual discrepancy is due to the ability of the <span class="hlt">zooplankton</span> to feed in layers with high algal density and to avoid depths with lower algal density. Since theoretical studies would predict enhancing in system stability in the case of Holling type III, our results may be of importance for understanding the main factors controlling plankton dynamics.</p> </li> </ol> <div class="pull-right"> <ul class="pagination"> <li><a href="#" onclick='return showDiv("page_1");'>«</a></li> <li><a href="#" onclick='return showDiv("page_17");'>17</a></li> <li><a href="#" onclick='return showDiv("page_18");'>18</a></li> <li class="active"><span>19</span></li> <li><a href="#" onclick='return showDiv("page_20");'>20</a></li> <li><a href="#" onclick='return showDiv("page_21");'>21</a></li> <li><a href="#" onclick='return showDiv("page_25");'>»</a></li> </ul> </div> </div><!-- col-sm-12 --> </div><!-- row --> </div><!-- page_19 --> <div id="page_20" class="hiddenDiv"> <div class="row"> <div class="col-sm-12"> <div class="pull-right"> <ul class="pagination"> <li><a href="#" onclick='return showDiv("page_1");'>«</a></li> <li><a href="#" onclick='return showDiv("page_18");'>18</a></li> <li><a href="#" onclick='return showDiv("page_19");'>19</a></li> <li class="active"><span>20</span></li> <li><a href="#" onclick='return showDiv("page_21");'>21</a></li> <li><a href="#" onclick='return showDiv("page_22");'>22</a></li> <li><a href="#" onclick='return showDiv("page_25");'>»</a></li> </ul> </div> </div> </div> <div class="row"> <div class="col-sm-12"> <ol class="result-class" start="381"> <li> <p><a target="_blank" onclick="trackOutboundLink('https://www.ncbi.nlm.nih.gov/pubmed/29804250','PUBMED'); return false;" href="https://www.ncbi.nlm.nih.gov/pubmed/29804250"><span><span class="hlt">Zooplankton</span> sensitivity and phytoplankton regrowth for ballast water treatment with advanced oxidation processes.</span></a></p> <p><a target="_blank" href="https://www.ncbi.nlm.nih.gov/entrez/query.fcgi?DB=pubmed">PubMed</a></p> <p>García-Garay, Juan; Franco-Herrera, Andrés; Machuca-Martinez, Fiderman</p> <p>2018-05-26</p> <p>The ballasting and de-ballasting of ships are two necessary operations with ballast water that provide stability for safe navigation. Empty ships must ballast tanks with water, which contains living organisms and subsequently carries them away from their original distribution. De-ballasting represents an input of still viable <span class="hlt">zooplankton</span>, phytoplankton, and microorganisms in the destination port, leading to the introduction of alien species, and consequently, the introduction of organisms will alter the local biodiversity. Ballast water treatment is necessary to comply with the International Maritime Organization (IMO) for the maximum viable organisms permitted. It is known that UVC eliminates microorganisms, but there are few studies on the other taxonomical groups, such as phytoplankton and <span class="hlt">zooplankton</span>. The advance oxidation processes (AOPs) with UV-C can be a good alternative to manage the problem of ballast water, primarily for microorganisms. However, for larger organisms, there is more resistance, and, a stage with filtration (by physical filtration or hydrocyclone) is usually required. The filter can fail, or certain <span class="hlt">zooplankton</span> organisms can escape across the filter and go to the AOPs or UVC reactor. According to the taxonomic group, there can be a different sensitivity to the treatment, and one could survive and generate a risk. The AOPs tested were natural solar radiation (RAD), UV/H 2 O 2 , UV/TiO 2 , UV/TiO 2 /H 2 O 2 , and UV/TiO 2 /H 2 O 2 /RAD. Natural sea water was pumped and treated with the AOPs. The vital <span class="hlt">zooplankton</span> organisms counted were polychaetes, cladocerans, ostracods, nauplii and calanoid, cyclopoid, and harpacticoid copepods. For the phytoplankton, the abundance was estimated, and the photosystem II efficiency was determined. To evaluate the phytoplankton regrowth after the treatments, the treated water was stored and populations counted for 20 days. The most effective treatment for the <span class="hlt">zooplankton</span> groups was UVC/H 2 O 2 . Regarding the</p> </li> <li> <p><a target="_blank" onclick="trackOutboundLink('http://adsabs.harvard.edu/abs/1980HM.....33..225S','NASAADS'); return false;" href="http://adsabs.harvard.edu/abs/1980HM.....33..225S"><span>Effects of the ``Amoco Cadiz'' oil spill on <span class="hlt">zooplankton</span></span></a></p> <p><a target="_blank" href="http://adsabs.harvard.edu/abstract_service.html">NASA Astrophysics Data System (ADS)</a></p> <p>Samain, J. F.; Moal, J.; Coum, A.; Le Coz, J. R.; Daniel, J. Y.</p> <p>1980-03-01</p> <p>A survey of <span class="hlt">zooplankton</span> physiology on the northern coast of Brittany (France) was carried out over a one-year period by comparing two estuarine areas, one oil-polluted area (Aber Benoit) following the oil spill by the tanker “Amoco Cadiz” and one non-oil-polluted area (Rade de Brest). A new approach to an ecological survey was made by describing trophic relationships using analysis of digestive enzyme equipment (amylase and trypsin) of <span class="hlt">zooplankton</span> organisms, mesoplankton populations and some selected species. These measurements allowed determination of (a) groups of populations with homogeneous trophic and faunistic characteristics and (b) groups of species with homogeneous trophic characteristics. The study of the appearance of these groups over a one-year period revealed the succession of populations and their adaptation to the environment on the basis of biochemical analysis. These phenomena observed in the compared areas showed marked differences in the most polluted areas during the productive spring period. Specific treatment of the data using unusual correlations between digestive enzymes is discussed in terms of the immediate effect on the whole population and on a copepod ( Anomalocera patersoni) living in the upper 10 cm.</p> </li> <li> <p><a target="_blank" onclick="trackOutboundLink('https://www.ncbi.nlm.nih.gov/pubmed/24490649','PUBMED'); return false;" href="https://www.ncbi.nlm.nih.gov/pubmed/24490649"><span>Salinity affects <span class="hlt">compositional</span> traits of epibacterial <span class="hlt">communities</span> on the brown macroalga Fucus vesiculosus.</span></a></p> <p><a target="_blank" href="https://www.ncbi.nlm.nih.gov/entrez/query.fcgi?DB=pubmed">PubMed</a></p> <p>Stratil, Stephanie B; Neulinger, Sven C; Knecht, Henrik; Friedrichs, Anette K; Wahl, Martin</p> <p>2014-05-01</p> <p>Epibiotic biofilms have the potential to control major aspects of the biology and ecology of their hosts. Their <span class="hlt">composition</span> and function may thus be essential for the health of the host. We tested the influence of salinity on the <span class="hlt">composition</span> of epibacterial <span class="hlt">communities</span> associated with the brown macroalga Fucus vesiculosus. Algal individuals were incubated at three salinities (5, 19, and 25) for 14 days and nonliving reference substrata (stones) were included in the experiment. Subsequently, the <span class="hlt">composition</span> of their surface-associated bacterial <span class="hlt">communities</span> was analyzed by 454 pyrosequencing of 16S rRNA gene sequences. Redundancy analysis revealed that the <span class="hlt">composition</span> of epiphytic and epilithic <span class="hlt">communities</span> significantly differed and were both affected by salinity. We found that 5% of 2494 epiphytic operational taxonomic units at 97% sequence similarity were responsible for the observed shifts. Epibacterial α-diversity was significantly lower at salinity 5 but did not differ between substrata. Our results indicate that salinity is an important factor in structuring alga-associated epibacterial <span class="hlt">communities</span> with respect to <span class="hlt">composition</span> and/or diversity. Whether direct or indirect mechanisms (via altered biotic interactions) may have been responsible for the observed shifts is discussed. © 2014 Federation of European Microbiological Societies. Published by John Wiley & Sons Ltd. All rights reserved.</p> </li> <li> <p><a target="_blank" onclick="trackOutboundLink('https://www.ncbi.nlm.nih.gov/pubmed/29187605','PUBMED'); return false;" href="https://www.ncbi.nlm.nih.gov/pubmed/29187605"><span>Predictability of bee <span class="hlt">community</span> <span class="hlt">composition</span> after floral removals differs by floral trait group.</span></a></p> <p><a target="_blank" href="https://www.ncbi.nlm.nih.gov/entrez/query.fcgi?DB=pubmed">PubMed</a></p> <p>Urban-Mead, Katherine R</p> <p>2017-11-01</p> <p>Plant-bee visitor <span class="hlt">communities</span> are complex networks. While studies show that deleting nodes alters network topology, predicting these changes in the field remains difficult. Here, a simple trait-based approach is tested for predicting bee <span class="hlt">community</span> <span class="hlt">composition</span> following disturbance. I selected six fields with mixed cover of flower species with shallow (open) and deep (tube) nectar access, and removed all flowers or flower heads of species of each trait in different plots paired with controls, then observed bee foraging and <span class="hlt">composition</span>. I compared the bee <span class="hlt">community</span> in each manipulated plot with bees on the same flower species in control plots. The bee morphospecies <span class="hlt">composition</span> in manipulations with only tube flowers remaining was the same as that in the control plots, while the bee morphospecies on only open flowers were dissimilar from those in control plots. However, the proportion of short- and long-tongued bees on focal flowers did not differ between control and manipulated plots for either manipulation. So, bees within some functional groups are more strongly linked to their floral trait partners than others. And, it may be more fruitful to describe expected bee <span class="hlt">community</span> <span class="hlt">compositions</span> in terms of relative proportions of relevant ecological traits than species, particularly in species-diverse <span class="hlt">communities</span>. © 2017 The Author(s).</p> </li> <li> <p><a target="_blank" onclick="trackOutboundLink('http://adsabs.harvard.edu/abs/2008PhDT........77M','NASAADS'); return false;" href="http://adsabs.harvard.edu/abs/2008PhDT........77M"><span>Dynamics of phytoplankton <span class="hlt">community</span> <span class="hlt">composition</span> in the western Gulf of Maine</span></a></p> <p><a target="_blank" href="http://adsabs.harvard.edu/abstract_service.html">NASA Astrophysics Data System (ADS)</a></p> <p>Moore, Timothy S.</p> <p></p> <p>This dissertation is founded on the importance of phytoplankton <span class="hlt">community</span> <span class="hlt">composition</span> to marine biogeochemistry and ecosystem processes and motivated by the need to understand their distributions on regional to global scales. The ultimate goal was to predict surface phytoplankton <span class="hlt">communities</span> using satellite remote sensing by relating marine habitats--defined through a statistical description of environmental properties--to different phytoplankton <span class="hlt">communities</span>. While phytoplankton <span class="hlt">community</span> <span class="hlt">composition</span> is governed by the interplay of abiotic and biotic interactions, the strategy adopted here was to focus on the physical abiotic factors. This allowed for the detection of habitats from ocean satellites based on abiotic factors that were linked to associated phytoplankton <span class="hlt">communities</span>. The research entailed three studies that addressed different aspects of the main goal using a dataset collected in the western Gulf of Maine over a 3-year period. The first study evaluated a chemotaxonomic method that quantified phytoplankton <span class="hlt">composition</span> from pigment data. This enabled the characterization of three phytoplankton <span class="hlt">communities</span>, which were defined by the relative abundance of diatoms and flagellates. The second study examined the cycles of these <span class="hlt">communities</span> along with environmental variables, and the results revealed that the three phytoplankton <span class="hlt">communities</span> exhibited an affinity to different hydrographic regimes. The third study focused on the implementation of a classifier that predicted phytoplankton <span class="hlt">communities</span> from environmental variables. Its ability to differentiate <span class="hlt">communities</span> dominated by diatoms versus flagellates was shown to be high. However, the increase in data imprecision when using satellite data led to lowered performance and favored an approach that incorporated fuzzy logic. The fuzzy method is well suited to characterize the uncertainties in phytoplankton <span class="hlt">community</span> prediction, and provides a measure of confidence on predicted <span class="hlt">communities</span>. The final product of</p> </li> <li> <p><a target="_blank" onclick="trackOutboundLink('http://adsabs.harvard.edu/abs/2001DSRII..48.1063H','NASAADS'); return false;" href="http://adsabs.harvard.edu/abs/2001DSRII..48.1063H"><span>Diel changes in the near-surface biomass of <span class="hlt">zooplankton</span> and the carbon content of vertical migrants</span></a></p> <p><a target="_blank" href="http://adsabs.harvard.edu/abstract_service.html">NASA Astrophysics Data System (ADS)</a></p> <p>Hays, Graeme C.; Harris, Roger P.; Head, Robert N.</p> <p></p> <p><span class="hlt">Zooplankton</span> biomass and the carbon content of vertical migrants were measured in the NE Atlantic (36.5°N, 19.2°W) between 11 and 18 July 1996 as part of the Plankton Reactivity in the Marine Environment (PRIME) programme. The increase in <span class="hlt">zooplankton</span> biomass near the surface (0-100 m) at night compared to during the day suggested that diel vertical migration was an important feature at this site. For three species of vertically migrant copepods, Pleuromamma pisekii, P. gracilis and P. abdominalis, the carbon content of individuals collected at dusk was significantly less than for individuals collected at dawn, with this reduction being 6.2, 7.3 and 14.8%, respectively. This dawn-dusk reduction in carbon content is consistent with the diel pattern of feeding and fasting exhibited by vertical migrants and supports the suggestion that migrating <span class="hlt">zooplankton</span> will cause an active export of carbon from the surface layers.</p> </li> <li> <p><a target="_blank" onclick="trackOutboundLink('https://www.ncbi.nlm.nih.gov/pubmed/27488200','PUBMED'); return false;" href="https://www.ncbi.nlm.nih.gov/pubmed/27488200"><span>Phytoplankton responses to temperature increases are constrained by abiotic conditions and <span class="hlt">community</span> <span class="hlt">composition</span>.</span></a></p> <p><a target="_blank" href="https://www.ncbi.nlm.nih.gov/entrez/query.fcgi?DB=pubmed">PubMed</a></p> <p>Striebel, Maren; Schabhüttl, Stefanie; Hodapp, Dorothee; Hingsamer, Peter; Hillebrand, Helmut</p> <p>2016-11-01</p> <p>Effects of temperature changes on phytoplankton <span class="hlt">communities</span> seem to be highly context-specific, but few studies have analyzed whether this context specificity depends on differences in the abiotic conditions or in species <span class="hlt">composition</span> between studies. We present an experiment that allows disentangling the contribution of abiotic and biotic differences in shaping the response to two aspects of temperature change: permanent increase of mean temperature versus pulse disturbance in form of a heat wave. We used natural <span class="hlt">communities</span> from six different sites of a floodplain system as well as artificially mixed <span class="hlt">communities</span> from laboratory cultures and grew both, artificial and natural <span class="hlt">communities</span>, in water from the six different floodplain lakes (sites). All 12 contexts (2 <span class="hlt">communities</span> × 6 sites) were first exposed to three different temperature levels (12, 18, 24 °C, respectively) and afterward to temperature pulses (4 °C increase for 7 h day(-1)). Temperature-dependent changes in biomass and <span class="hlt">community</span> <span class="hlt">composition</span> depended on the initial <span class="hlt">composition</span> of phytoplankton <span class="hlt">communities</span>. Abiotic conditions had a major effect on biomass of phytoplankton <span class="hlt">communities</span> exposed to different temperature conditions, however, the effect of biotic and abiotic conditions together was even more pronounced. Additionally, phytoplankton <span class="hlt">community</span> responses to pulse temperature effects depended on the warming history. By disentangling abiotic and biotic effects, our study shows that temperature-dependent effects on phytoplankton <span class="hlt">communities</span> depend on both, biotic and abiotic constraints.</p> </li> <li> <p><a target="_blank" onclick="trackOutboundLink('https://pubs.er.usgs.gov/publication/70011713','USGSPUBS'); return false;" href="https://pubs.er.usgs.gov/publication/70011713"><span><span class="hlt">Zooplankton</span> fecal pellets link fossil fuel and phosphate deposits</span></a></p> <p><a target="_blank" href="http://pubs.er.usgs.gov/pubs/index.jsp?view=adv">USGS Publications Warehouse</a></p> <p>Porter, K.G.; Robbins, E.I.</p> <p>1981-01-01</p> <p>Fossil <span class="hlt">zooplankton</span> fecal pellets found in thinly bedded marine and lacustrine black shales associated with phosphate, oil, and coal deposits, link the deposition of organic matter and biologically associated minerals with planktonic ecosystems. The black shales were probably formed in the anoxic basins of coastal marine waters, inland seas, and rift valley lakes where high productivity was supported by runoff, upwelling, and outwelling. Copyright ?? 1981 AAAS.</p> </li> <li> <p><a target="_blank" onclick="trackOutboundLink('https://www.pubmedcentral.nih.gov/articlerender.fcgi?tool=pmcentrez&artid=4492990','PMC'); return false;" href="https://www.pubmedcentral.nih.gov/articlerender.fcgi?tool=pmcentrez&artid=4492990"><span>Estimating In Situ <span class="hlt">Zooplankton</span> Non-Predation Mortality in an Oligo-Mesotrophic Lake from Sediment Trap Data: Caveats and Reality Check</span></a></p> <p><a target="_blank" href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?DB=pmc">PubMed Central</a></p> <p>Dubovskaya, Olga P.; Tang, Kam W.; Gladyshev, Michail I.; Kirillin, Georgiy; Buseva, Zhanna; Kasprzak, Peter; Tolomeev, Aleksandr P.; Grossart, Hans-Peter</p> <p>2015-01-01</p> <p>Background Mortality is a main driver in <span class="hlt">zooplankton</span> population biology but it is poorly constrained in models that describe <span class="hlt">zooplankton</span> population dynamics, food web interactions and nutrient dynamics. Mortality due to non-predation factors is often ignored even though anecdotal evidence of non-predation mass mortality of <span class="hlt">zooplankton</span> has been reported repeatedly. One way to estimate non-predation mortality rate is to measure the removal rate of carcasses, for which sinking is the primary removal mechanism especially in quiescent shallow water bodies. Objectives and Results We used sediment traps to quantify in situ carcass sinking velocity and non-predation mortality rate on eight consecutive days in 2013 for the cladoceran Bosmina longirostris in the oligo-mesotrophic Lake Stechlin; the outcomes were compared against estimates derived from in vitro carcass sinking velocity measurements and an empirical model correcting in vitro sinking velocity for turbulence resuspension and microbial decomposition of carcasses. Our results show that the latter two approaches produced unrealistically high mortality rates of 0.58-1.04 d-1, whereas the sediment trap approach, when used properly, yielded a mortality rate estimate of 0.015 d-1, which is more consistent with concurrent population abundance data and comparable to physiological death rate from the literature. Ecological implications <span class="hlt">Zooplankton</span> carcasses may be exposed to water column microbes for days before entering the benthos; therefore, non-predation mortality affects not only <span class="hlt">zooplankton</span> population dynamics but also microbial and benthic food webs. This would be particularly important for carbon and nitrogen cycles in systems where recurring mid-summer decline of <span class="hlt">zooplankton</span> population due to non-predation mortality is observed. PMID:26146995</p> </li> <li> <p><a target="_blank" onclick="trackOutboundLink('https://www.ncbi.nlm.nih.gov/pubmed/27127198','PUBMED'); return false;" href="https://www.ncbi.nlm.nih.gov/pubmed/27127198"><span>Variation in coastal Antarctic microbial <span class="hlt">community</span> <span class="hlt">composition</span> at sub-mesoscale: spatial distance or environmental filtering?</span></a></p> <p><a target="_blank" href="https://www.ncbi.nlm.nih.gov/entrez/query.fcgi?DB=pubmed">PubMed</a></p> <p>Moreno-Pino, Mario; De la Iglesia, Rodrigo; Valdivia, Nelson; Henríquez-Castilo, Carlos; Galán, Alexander; Díez, Beatriz; Trefault, Nicole</p> <p>2016-07-01</p> <p>Spatial environmental heterogeneity influences diversity of organisms at different scales. Environmental filtering suggests that local environmental conditions provide habitat-specific scenarios for niche requirements, ultimately determining the <span class="hlt">composition</span> of local <span class="hlt">communities</span>. In this work, we analyze the spatial variation of microbial <span class="hlt">communities</span> across environmental gradients of sea surface temperature, salinity and photosynthetically active radiation and spatial distance in Fildes Bay, King George Island, Antarctica. We hypothesize that environmental filters are the main control of the spatial variation of these <span class="hlt">communities</span>. Thus, strong relationships between <span class="hlt">community</span> <span class="hlt">composition</span> and environmental variation and weak relationships between <span class="hlt">community</span> <span class="hlt">composition</span> and spatial distance are expected. Combining physical characterization of the water column, cell counts by flow cytometry, small ribosomal subunit genes fingerprinting and next generation sequencing, we contrast the abundance and <span class="hlt">composition</span> of photosynthetic eukaryotes and heterotrophic bacterial local <span class="hlt">communities</span> at a submesoscale. Our results indicate that the strength of the environmental controls differed markedly between eukaryotes and bacterial <span class="hlt">communities</span>. Whereas eukaryotic photosynthetic assemblages responded weakly to environmental variability, bacteria respond promptly to fine-scale environmental changes in this polar marine system. © FEMS 2016. All rights reserved. For permissions, please e-mail: journals.permissions@oup.com.</p> </li> <li> <p><a target="_blank" onclick="trackOutboundLink('https://www.ncbi.nlm.nih.gov/pubmed/28898955','PUBMED'); return false;" href="https://www.ncbi.nlm.nih.gov/pubmed/28898955"><span>Aging of microplastics promotes their ingestion by marine <span class="hlt">zooplankton</span>.</span></a></p> <p><a target="_blank" href="https://www.ncbi.nlm.nih.gov/entrez/query.fcgi?DB=pubmed">PubMed</a></p> <p>Vroom, Renske J E; Koelmans, Albert A; Besseling, Ellen; Halsband, Claudia</p> <p>2017-12-01</p> <p>Microplastics (<5 mm) are ubiquitous in the marine environment and are ingested by <span class="hlt">zooplankton</span> with possible negative effects on survival, feeding, and fecundity. The majority of laboratory studies has used new and pristine microplastics to test their impacts, while aging processes such as weathering and biofouling alter the characteristics of plastic particles in the marine environment. We investigated <span class="hlt">zooplankton</span> ingestion of polystyrene beads (15 and 30 μm) and fragments (≤30 μm), and tested the hypothesis that microplastics previously exposed to marine conditions (aged) are ingested at higher rates than pristine microplastics. Polystyrene beads were aged by soaking in natural local seawater for three weeks. Three <span class="hlt">zooplankton</span> taxa ingested microplastics, excluding the copepod Pseudocalanus spp., but the proportions of individuals ingesting plastic and the number of particles ingested were taxon and life stage specific and dependent on plastic size. All stages of Calanus finmarchicus ingested polystyrene fragments. Aged microbeads were preferred over pristine ones by females of Acartia longiremis as well as juvenile copepodites CV and adults of Calanus finmarchicus. The preference for aged microplastics may be attributed to the formation of a biofilm. Such a coating, made up of natural microbes, may contain similar prey as the copepods feed on in the water column and secrete chemical exudates that aid chemodetection and thus increase the attractiveness of the particles as food items. Much of the ingested plastic was, however, egested within a short time period (2-4 h) and the survival of adult Calanus females was not affected in an 11-day exposure. Negative effects of microplastics ingestion were thus limited. Our findings emphasize, however, that aging plays an important role in the transformation of microplastics at sea and ingestion by grazers, and should thus be considered in future microplastics ingestion studies and estimates of microplastics</p> </li> <li> <p><a target="_blank" onclick="trackOutboundLink('https://www.ncbi.nlm.nih.gov/pubmed/27528692','PUBMED'); return false;" href="https://www.ncbi.nlm.nih.gov/pubmed/27528692"><span>Fire regime, not time-since-fire, affects soil fungal <span class="hlt">community</span> diversity and <span class="hlt">composition</span> in temperate grasslands.</span></a></p> <p><a target="_blank" href="https://www.ncbi.nlm.nih.gov/entrez/query.fcgi?DB=pubmed">PubMed</a></p> <p>Egidi, Eleonora; McMullan-Fisher, Sapphire; Morgan, John W; May, Tom; Zeeman, Ben; Franks, Ashley E</p> <p>2016-09-01</p> <p>Frequent burning is commonly undertaken to maintain diversity in temperate grasslands of southern Australia. How burning affects below-ground fungal <span class="hlt">community</span> diversity remains unknown. We show, using a fungal rDNA metabarcoding approach (Illumina MiSeq), that the fungal <span class="hlt">community</span> <span class="hlt">composition</span> was influenced by fire regime (frequency) but not time-since-fire. Fungal <span class="hlt">community</span> <span class="hlt">composition</span> was resilient to direct fire effects, most likely because grassland fires transfer little heat to the soil. Differences in the fungal <span class="hlt">community</span> <span class="hlt">composition</span> due to fire regime was likely due to associated changes that occur in vegetation with recurrent fire, via the break up of obligate symbiotic relationships. However, fire history only partially explains the observed dissimilarity in <span class="hlt">composition</span> among the soil samples, suggesting a distinctiveness in <span class="hlt">composition</span> in each grassland site. The importance of considering changes in soil microbe <span class="hlt">communities</span> when managing vegetation with fire is highlighted. © FEMS 2016. All rights reserved. For permissions, please e-mail: journals.permissions@oup.com.</p> </li> <li> <p><a target="_blank" onclick="trackOutboundLink('https://www.ncbi.nlm.nih.gov/pubmed/28618206','PUBMED'); return false;" href="https://www.ncbi.nlm.nih.gov/pubmed/28618206"><span>Grazing of leaf-associated Cercomonads (Protists: Rhizaria: Cercozoa) structures bacterial <span class="hlt">community</span> <span class="hlt">composition</span> and function.</span></a></p> <p><a target="_blank" href="https://www.ncbi.nlm.nih.gov/entrez/query.fcgi?DB=pubmed">PubMed</a></p> <p>Flues, Sebastian; Bass, David; Bonkowski, Michael</p> <p>2017-08-01</p> <p>Preferential food selection in protists is well documented, but we still lack basic understanding on how protist predation modifies the taxonomic and functional <span class="hlt">composition</span> of bacterial <span class="hlt">communities</span>. We conducted feeding trials using leaf-associated cercomonad Cercozoa by incubating them on a standardized, diverse bacterial <span class="hlt">community</span> washed from plant leaves. We used a shotgun metagenomics approach to investigate the taxonomic and functional changes of the bacterial <span class="hlt">community</span> after five days protist predation on bacteria. Predation-induced shifts in bacterial <span class="hlt">community</span> <span class="hlt">composition</span> could be linked to phenotypic protist traits. Protist reproduction rate, morphological plasticity and cell speed were most important in determining bacterial <span class="hlt">community</span> <span class="hlt">composition</span>. Analyses of co-occurrence patterns showed less complex correlations between bacterial taxa in the protist-grazed treatments with a higher proportion of positive correlations than in non-grazed controls, suggesting that predation reduced the influence of strong competitors. Protist predation influenced 14 metabolic core functions including membrane transport from which type VI secretion systems were in particular upregulated. In view of the functional importance of bacterial <span class="hlt">communities</span> in the phyllosphere and rhizosphere of plants, a more detailed understanding of predator-prey interactions, changes in microbial <span class="hlt">composition</span> and function, and subsequent repercussions on plant performance are clearly required. © 2017 Society for Applied Microbiology and John Wiley & Sons Ltd.</p> </li> <li> <p><a target="_blank" onclick="trackOutboundLink('https://www.ncbi.nlm.nih.gov/pubmed/24672520','PUBMED'); return false;" href="https://www.ncbi.nlm.nih.gov/pubmed/24672520"><span>Stormwater runoff drives viral <span class="hlt">community</span> <span class="hlt">composition</span> changes in inland freshwaters.</span></a></p> <p><a target="_blank" href="https://www.ncbi.nlm.nih.gov/entrez/query.fcgi?DB=pubmed">PubMed</a></p> <p>Williamson, Kurt E; Harris, Jamie V; Green, Jasmin C; Rahman, Faraz; Chambers, Randolph M</p> <p>2014-01-01</p> <p>Storm events impact freshwater microbial <span class="hlt">communities</span> by transporting terrestrial viruses and other microbes to freshwater systems, and by potentially resuspending microbes from bottom sediments. The magnitude of these impacts on freshwater ecosystems is unknown and largely unexplored. Field studies carried out at two discrete sites in coastal Virginia (USA) were used to characterize the viral load carried by runoff and to test the hypothesis that terrestrial viruses introduced through stormwater runoff change the <span class="hlt">composition</span> of freshwater microbial <span class="hlt">communities</span>. Field data gathered from an agricultural watershed indicated that primary runoff can contain viral densities approximating those of receiving waters. Furthermore, viruses attached to suspended colloids made up a large fraction of the total load, particularly in early stages of the storm. At a second field site (stormwater retention pond), RAPD-PCR profiling showed that the viral <span class="hlt">community</span> of the pond changed dramatically over the course of two intense storms while relatively little change was observed over similar time scales in the absence of disturbance. Comparisons of planktonic and particle-associated viral <span class="hlt">communities</span> revealed two completely distinct <span class="hlt">communities</span>, suggesting that particle-associated viruses represent a potentially large and overlooked portion of aquatic viral abundance and diversity. Our findings show that stormwater runoff can quickly change the <span class="hlt">composition</span> of freshwater microbial <span class="hlt">communities</span>. Based on these findings, increased storms in the coastal mid-Atlantic region predicted by most climate change models will likely have important impacts on the structure and function of local freshwater microbial <span class="hlt">communities</span>.</p> </li> <li> <p><a target="_blank" onclick="trackOutboundLink('https://www.pubmedcentral.nih.gov/articlerender.fcgi?tool=pmcentrez&artid=3954104','PMC'); return false;" href="https://www.pubmedcentral.nih.gov/articlerender.fcgi?tool=pmcentrez&artid=3954104"><span>Stormwater runoff drives viral <span class="hlt">community</span> <span class="hlt">composition</span> changes in inland freshwaters</span></a></p> <p><a target="_blank" href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?DB=pmc">PubMed Central</a></p> <p>Williamson, Kurt E.; Harris, Jamie V.; Green, Jasmin C.; Rahman, Faraz; Chambers, Randolph M.</p> <p>2014-01-01</p> <p>Storm events impact freshwater microbial <span class="hlt">communities</span> by transporting terrestrial viruses and other microbes to freshwater systems, and by potentially resuspending microbes from bottom sediments. The magnitude of these impacts on freshwater ecosystems is unknown and largely unexplored. Field studies carried out at two discrete sites in coastal Virginia (USA) were used to characterize the viral load carried by runoff and to test the hypothesis that terrestrial viruses introduced through stormwater runoff change the <span class="hlt">composition</span> of freshwater microbial <span class="hlt">communities</span>. Field data gathered from an agricultural watershed indicated that primary runoff can contain viral densities approximating those of receiving waters. Furthermore, viruses attached to suspended colloids made up a large fraction of the total load, particularly in early stages of the storm. At a second field site (stormwater retention pond), RAPD-PCR profiling showed that the viral <span class="hlt">community</span> of the pond changed dramatically over the course of two intense storms while relatively little change was observed over similar time scales in the absence of disturbance. Comparisons of planktonic and particle-associated viral <span class="hlt">communities</span> revealed two completely distinct <span class="hlt">communities</span>, suggesting that particle-associated viruses represent a potentially large and overlooked portion of aquatic viral abundance and diversity. Our findings show that stormwater runoff can quickly change the <span class="hlt">composition</span> of freshwater microbial <span class="hlt">communities</span>. Based on these findings, increased storms in the coastal mid-Atlantic region predicted by most climate change models will likely have important impacts on the structure and function of local freshwater microbial <span class="hlt">communities</span>. PMID:24672520</p> </li> <li> <p><a target="_blank" onclick="trackOutboundLink('https://www.pubmedcentral.nih.gov/articlerender.fcgi?tool=pmcentrez&artid=3976392','PMC'); return false;" href="https://www.pubmedcentral.nih.gov/articlerender.fcgi?tool=pmcentrez&artid=3976392"><span>Effects of Soil Organic Matter Properties and Microbial <span class="hlt">Community</span> <span class="hlt">Composition</span> on Enzyme Activities in Cryoturbated Arctic Soils</span></a></p> <p><a target="_blank" href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?DB=pmc">PubMed Central</a></p> <p>Schnecker, Jörg; Wild, Birgit; Hofhansl, Florian; Eloy Alves, Ricardo J.; Bárta, Jiří; Čapek, Petr; Fuchslueger, Lucia; Gentsch, Norman; Gittel, Antje; Guggenberger, Georg; Hofer, Angelika; Kienzl, Sandra; Knoltsch, Anna; Lashchinskiy, Nikolay; Mikutta, Robert; Šantrůčková, Hana; Shibistova, Olga; Takriti, Mounir; Urich, Tim; Weltin, Georg; Richter, Andreas</p> <p>2014-01-01</p> <p>Enzyme-mediated decomposition of soil organic matter (SOM) is controlled, amongst other factors, by organic matter properties and by the microbial decomposer <span class="hlt">community</span> present. Since microbial <span class="hlt">community</span> <span class="hlt">composition</span> and SOM properties are often interrelated and both change with soil depth, the drivers of enzymatic decomposition are hard to dissect. We investigated soils from three regions in the Siberian Arctic, where carbon rich topsoil material has been incorporated into the subsoil (cryoturbation). We took advantage of this subduction to test if SOM properties shape microbial <span class="hlt">community</span> <span class="hlt">composition</span>, and to identify controls of both on enzyme activities. We found that microbial <span class="hlt">community</span> <span class="hlt">composition</span> (estimated by phospholipid fatty acid analysis), was similar in cryoturbated material and in surrounding subsoil, although carbon and nitrogen contents were similar in cryoturbated material and topsoils. This suggests that the microbial <span class="hlt">community</span> in cryoturbated material was not well adapted to SOM properties. We also measured three potential enzyme activities (cellobiohydrolase, leucine-amino-peptidase and phenoloxidase) and used structural equation models (SEMs) to identify direct and indirect drivers of the three enzyme activities. The models included microbial <span class="hlt">community</span> <span class="hlt">composition</span>, carbon and nitrogen contents, clay content, water content, and pH. Models for regular horizons, excluding cryoturbated material, showed that all enzyme activities were mainly controlled by carbon or nitrogen. Microbial <span class="hlt">community</span> <span class="hlt">composition</span> had no effect. In contrast, models for cryoturbated material showed that enzyme activities were also related to microbial <span class="hlt">community</span> <span class="hlt">composition</span>. The additional control of microbial <span class="hlt">community</span> <span class="hlt">composition</span> could have restrained enzyme activities and furthermore decomposition in general. The functional decoupling of SOM properties and microbial <span class="hlt">community</span> <span class="hlt">composition</span> might thus be one of the reasons for low decomposition rates and the persistence of 400 Gt</p> </li> <li> <p><a target="_blank" onclick="trackOutboundLink('https://www.ncbi.nlm.nih.gov/pubmed/27859207','PUBMED'); return false;" href="https://www.ncbi.nlm.nih.gov/pubmed/27859207"><span>Compensatory dynamics stabilize aggregate <span class="hlt">community</span> properties in response to multiple types of perturbations.</span></a></p> <p><a target="_blank" href="https://www.ncbi.nlm.nih.gov/entrez/query.fcgi?DB=pubmed">PubMed</a></p> <p>Brown, Bryan L; Downing, Amy L; Leibold, Mathew A</p> <p>2016-08-01</p> <p>Compensatory dynamics are an important suite of mechanisms that can stabilize <span class="hlt">community</span> and ecosystem attributes in systems subject to environmental fluctuations. However, few experimental investigations of compensatory dynamics have addressed these mechanisms in systems of real-world complexity, and existing evidence relies heavily on correlative analyses, retrospective examination, and experiments in simple systems. We investigated the potential for compensatory dynamics to stabilize plankton <span class="hlt">communities</span> in plankton mesocosm systems of real-world complexity. We employed four types of perturbations including two types of nutrient pulses, shading, and acidification. To quantify how <span class="hlt">communities</span> responded to these perturbations, we used a measure of <span class="hlt">community</span>-wide synchrony combined with spectral analysis that allowed us to assess timescale-specific <span class="hlt">community</span> dynamics, for example, whether dynamics were synchronous at some timescales but compensatory at others. The 150-d experiment produced 32-point time series of all <span class="hlt">zooplankton</span> taxa in the mesocosms. We then used those time series to evaluate total <span class="hlt">zooplankton</span> biomass as an aggregate property and to evaluate <span class="hlt">community</span> dynamics. For three of our four perturbation types, total <span class="hlt">zooplankton</span> biomass was significantly less variable in systems with environmental variation than in constant environments. For the same three perturbation types, <span class="hlt">community</span>-wide synchrony was much lower in fluctuating environments than in the constant environment, particularly at longer timescales (periods ≈ 60 d). Additionally, there were strong negative correlations between population temporal variances and the level of <span class="hlt">community</span>-wide synchrony. Taken together, these results strongly imply that compensatory interactions between species stabilized total biomass in response to perturbations. Diversity did not differ significantly across either treatments or perturbation types, thus ruling out several classes of mechanisms driven by changes in</p> </li> <li> <p><a target="_blank" onclick="trackOutboundLink('http://adsabs.harvard.edu/abs/2008PrOce..78..241W','NASAADS'); return false;" href="http://adsabs.harvard.edu/abs/2008PrOce..78..241W"><span>The summertime plankton <span class="hlt">community</span> at South Georgia (Southern Ocean): Comparing the historical (1926/1927) and modern (post 1995) records</span></a></p> <p><a target="_blank" href="http://adsabs.harvard.edu/abstract_service.html">NASA Astrophysics Data System (ADS)</a></p> <p>Ward, Peter; Meredith, Michael P.; Whitehouse, Mick J.; Rothery, Peter</p> <p>2008-09-01</p> <p>The earliest comprehensive plankton sampling programme in the Southern Ocean was undertaken during the early part of last century by Discovery Investigations to gain a greater scientific understanding of whale stocks and their summer feeding grounds. An initial survey was carried out around South Georgia during December 1926 and January 1927 to describe the distribution of plankton during the summer, and to serve as a baseline against which to compare future surveys. We have reanalysed phytoplankton and <span class="hlt">zooplankton</span> data from this survey and elucidated patterns of <span class="hlt">community</span> distribution and compared them with our recent understanding of the ecosystem based on contemporary data. Analysis of Discovery data identified five groups of stations with characteristic phytoplankton <span class="hlt">communities</span> which were almost entirely consistent with the original analysis conducted by [Hardy A.C., Gunther, E.R., 1935. The plankton of the South Georgia whaling grounds and adjacent waters 1926-1927. Discovery Report 11, 1-456]. Major groupings were located at the western end of the island and over the northern shelf where Corethron spp. were dominant, and to the south and east where a more diverse flora included high abundances of Nitzschia seriata. Major <span class="hlt">zooplankton</span>-station groupings were located over the inner shelf which was characterised by a high abundance of Drepanopus forcipatus and in oceanic water >500 m deep that were dominated by Foraminifera, Oithona spp., Ctenocalanus vanus, and Calanoides acutus. Stations along the middle and outer shelf regions to the north and west, were characterised by low overall abundance. There was some evidence that groupings of stations to the north of the island originated in different water masses on either side of the Southern Antarctic Circumpolar Current Front, the major frontal system in the deep ocean close to South Georgia. However, transect lines during 1926/1927 did not extend far enough offshore to sample this frontal region adequately</p> </li> <li> <p><a target="_blank" onclick="trackOutboundLink('http://adsabs.harvard.edu/abs/2016AGUOSME24D0744C','NASAADS'); return false;" href="http://adsabs.harvard.edu/abs/2016AGUOSME24D0744C"><span>Detecting Habitats and Ecosystem Functions Considering the Mesozooplankton Size and Diversity Structures and Environmental Conditions in the Gulf of Lion, NW Mediterranean Sea</span></a></p> <p><a target="_blank" href="http://adsabs.harvard.edu/abstract_service.html">NASA Astrophysics Data System (ADS)</a></p> <p>Carlotti, F.; Espinasse, B.; Zhou, M.; Jean-Luc, D.</p> <p>2016-02-01</p> <p>Environmental conditions and <span class="hlt">zooplankton</span> size structure and taxonomic diversity were investigated in the Gulf of Lion in May 2010 and January 2011. The integrated physical and biological measurements provided a 3D view with high spatial resolution of the physical and biological variables and their correlations over the whole gulf. The effects of physical processes such as freshwater input, coastal upwelling, and water column mixing by winds on phytoplankton and <span class="hlt">zooplankton</span> distributions were analyzed using these data. Several analytic tests were performed in order to define several ecoregions representing different habitats of plankton <span class="hlt">communities</span>. Three habitats were distinguished based on statistical analysis performed on biological and physical variables: (1) the coastal area characterized by shallow waters, high chl a concentrations, and a steep slope of the normalized biomass size spectrum (NBSS); (2) the area affected by the Rhône with high stratification and flat NBSS slope; and (3) the continental shelf with a deep mixed layer, relatively low particle concentrations, and moderate NBSS slope. The <span class="hlt">zooplankton</span> diversity was characterized by spatial differences in <span class="hlt">community</span> <span class="hlt">composition</span> among the Rhône plume area, the coastal shelf, and shelf break waters. Defining habitat is a relevant approach to designing new <span class="hlt">zooplankton</span> sampling strategies, validating distribution models and including the <span class="hlt">zooplankton</span> compartment in trophodynamic studies.</p> </li> <li> <p><a target="_blank" onclick="trackOutboundLink('http://adsabs.harvard.edu/abs/2016NatSR...629002F','NASAADS'); return false;" href="http://adsabs.harvard.edu/abs/2016NatSR...629002F"><span>Effects of landscape anthropization on mosquito <span class="hlt">community</span> <span class="hlt">composition</span> and abundance</span></a></p> <p><a target="_blank" href="http://adsabs.harvard.edu/abstract_service.html">NASA Astrophysics Data System (ADS)</a></p> <p>Ferraguti, Martina; Martínez-de La Puente, Josué; Roiz, David; Ruiz, Santiago; Soriguer, Ramón; Figuerola, Jordi</p> <p>2016-07-01</p> <p>Anthropogenic landscape transformation has an important effect on vector-borne pathogen transmission. However, the effects of urbanization on mosquito <span class="hlt">communities</span> are still only poorly known. Here, we evaluate how land-use characteristics are related to the abundance and <span class="hlt">community</span> <span class="hlt">composition</span> of mosquitoes in an area with endemic circulation of numerous mosquito-borne pathogens. We collected 340 829 female mosquitoes belonging to 13 species at 45 localities spatially grouped in 15 trios formed by 1 urban, 1 rural and 1 natural area. Mosquito abundance and species richness were greater in natural and rural areas than in urban areas. Environmental factors including land use, vegetation and hydrological characteristics were related to mosquito abundance and <span class="hlt">community</span> <span class="hlt">composition</span>. Given the differing competences of each species in pathogen transmission, these results provide valuable information on the transmission potential of mosquito-borne pathogens that will be of great use in public and animal health management by allowing, for instance, the identification of the priority areas for pathogen surveillance and vector control.</p> </li> </ol> <div class="pull-right"> <ul class="pagination"> <li><a href="#" onclick='return showDiv("page_1");'>«</a></li> <li><a href="#" onclick='return showDiv("page_18");'>18</a></li> <li><a href="#" onclick='return showDiv("page_19");'>19</a></li> <li class="active"><span>20</span></li> <li><a href="#" onclick='return showDiv("page_21");'>21</a></li> <li><a href="#" onclick='return showDiv("page_22");'>22</a></li> <li><a href="#" onclick='return showDiv("page_25");'>»</a></li> </ul> </div> </div><!-- col-sm-12 --> </div><!-- row --> </div><!-- page_20 --> <div id="page_21" class="hiddenDiv"> <div class="row"> <div class="col-sm-12"> <div class="pull-right"> <ul class="pagination"> <li><a href="#" onclick='return showDiv("page_1");'>«</a></li> <li><a href="#" onclick='return showDiv("page_19");'>19</a></li> <li><a href="#" onclick='return showDiv("page_20");'>20</a></li> <li class="active"><span>21</span></li> <li><a href="#" onclick='return showDiv("page_22");'>22</a></li> <li><a href="#" onclick='return showDiv("page_23");'>23</a></li> <li><a href="#" onclick='return showDiv("page_25");'>»</a></li> </ul> </div> </div> </div> <div class="row"> <div class="col-sm-12"> <ol class="result-class" start="401"> <li> <p><a target="_blank" onclick="trackOutboundLink('https://www.pubmedcentral.nih.gov/articlerender.fcgi?tool=pmcentrez&artid=4931447','PMC'); return false;" href="https://www.pubmedcentral.nih.gov/articlerender.fcgi?tool=pmcentrez&artid=4931447"><span>Effects of landscape anthropization on mosquito <span class="hlt">community</span> <span class="hlt">composition</span> and abundance</span></a></p> <p><a target="_blank" href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?DB=pmc">PubMed Central</a></p> <p>Ferraguti, Martina; Martínez-de la Puente, Josué; Roiz, David; Ruiz, Santiago; Soriguer, Ramón; Figuerola, Jordi</p> <p>2016-01-01</p> <p>Anthropogenic landscape transformation has an important effect on vector-borne pathogen transmission. However, the effects of urbanization on mosquito <span class="hlt">communities</span> are still only poorly known. Here, we evaluate how land-use characteristics are related to the abundance and <span class="hlt">community</span> <span class="hlt">composition</span> of mosquitoes in an area with endemic circulation of numerous mosquito-borne pathogens. We collected 340 829 female mosquitoes belonging to 13 species at 45 localities spatially grouped in 15 trios formed by 1 urban, 1 rural and 1 natural area. Mosquito abundance and species richness were greater in natural and rural areas than in urban areas. Environmental factors including land use, vegetation and hydrological characteristics were related to mosquito abundance and <span class="hlt">community</span> <span class="hlt">composition</span>. Given the differing competences of each species in pathogen transmission, these results provide valuable information on the transmission potential of mosquito-borne pathogens that will be of great use in public and animal health management by allowing, for instance, the identification of the priority areas for pathogen surveillance and vector control. PMID:27373794</p> </li> <li> <p><a target="_blank" onclick="trackOutboundLink('http://adsabs.harvard.edu/abs/2003DSRII..50.1765K','NASAADS'); return false;" href="http://adsabs.harvard.edu/abs/2003DSRII..50.1765K"><span>Temporal patterns in the distribution, biomass and <span class="hlt">community</span> structure of macrozooplankton and micronekton within Port Foster, Deception Island, Antarctica</span></a></p> <p><a target="_blank" href="http://adsabs.harvard.edu/abstract_service.html">NASA Astrophysics Data System (ADS)</a></p> <p>Kaufmann, Ronald S.; Fisher, Erin C.; Gill, Walthus H.; King, Andrew L.; Laubacher, Matthew; Sullivan, Brian</p> <p>2003-06-01</p> <p>The pelagic <span class="hlt">community</span> within the flooded caldera of Deception Island, Antarctica, was sampled with a 10-m 2 opening-closing MOCNESS trawl on five cruises between March 1999 and November 2000. Collections were made in 50 m strata from the surface to 150 m depth in an area with a bottom depth of 155-160 m. From March 1999 through February 2000 the pelagic <span class="hlt">community</span> was dominated by krill, primarily Euphausia crystallorophias and E. superba, which made up >94% of total pelagic biomass on a dry-weight basis. <span class="hlt">Community</span> <span class="hlt">composition</span> shifted during early 2000, and samples from May and November 2000 contained a more diverse assemblage and large numbers of cydippid ctenophores, comprising ca. 30-35% of pelagic biomass on a dry weight basis. E. crystallorophias, which made up nearly 85% of the pelagic biomass in November 1999, declined to 5.8% during November 2000. The change in <span class="hlt">composition</span> was accompanied by displacement of the biomass mode to greater depths, due to the deeper occurrence and lack of diel vertical migration in ctenophores, compared to krill. Integrated water-column biomass increased substantially from 1999 to 2000, primarily because of elevated abundances of gelatinous <span class="hlt">zooplankton</span> and the presence of significantly larger krill during 2000.</p> </li> <li> <p><a target="_blank" onclick="trackOutboundLink('https://www.ncbi.nlm.nih.gov/pubmed/27912020','PUBMED'); return false;" href="https://www.ncbi.nlm.nih.gov/pubmed/27912020"><span>Biodiversity increases functional and <span class="hlt">compositional</span> resistance, but decreases resilience in phytoplankton <span class="hlt">communities</span>.</span></a></p> <p><a target="_blank" href="https://www.ncbi.nlm.nih.gov/entrez/query.fcgi?DB=pubmed">PubMed</a></p> <p>Baert, Jan M; De Laender, Frederik; Sabbe, Koen; Janssen, Colin R</p> <p>2016-12-01</p> <p>There is now ample evidence that biodiversity stabilizes aggregated ecosystem functions, such as primary production, in changing environments. In primary producer systems, this stabilizing effect is found to be driven by higher functional resistance (i.e., reduced changes in functions by environmental changes) rather than through higher functional resilience (i.e., rapid recovery following environmental changes) in more diverse systems. The stability of aggregated ecosystem functions directly depends on changes in species <span class="hlt">composition</span> and by consequence their functional contributions to ecosystem functions. Still, it remains only theoretically explored how biodiversity can stabilize ecosystem functions by affecting <span class="hlt">compositional</span> stability. Here, we demonstrate how biodiversity effects on <span class="hlt">compositional</span> stability drive biodiversity effects on functional stability in diatom <span class="hlt">communities</span>. In a microcosm experiment, we exposed 39 <span class="hlt">communities</span> of five different levels of species richness (1, 2, 4, 6, and 8 species) to three concentrations of a chemical stressor (0, 25, and 250 μg/L atrazine) for four weeks, after which all <span class="hlt">communities</span> were transferred to atrazine-free medium for three more weeks. Biodiversity simultaneously increased, increasing functional and <span class="hlt">compositional</span> resistance, but decreased functional and <span class="hlt">compositional</span> resilience. These results confirm the theoretically proposed link between biodiversity effects on functional and <span class="hlt">compositional</span> stability in primary producer systems, and provide a mechanistic underpinning for observed biodiversity-stability relationships. Finally, we discuss how higher <span class="hlt">compositional</span> stability can be expected to become increasingly important in stabilizing ecosystem functions under field conditions when multiple environmental stressors fluctuate simultaneously. © 2016 by the Ecological Society of America.</p> </li> <li> <p><a target="_blank" onclick="trackOutboundLink('https://www.ncbi.nlm.nih.gov/pubmed/27992971','PUBMED'); return false;" href="https://www.ncbi.nlm.nih.gov/pubmed/27992971"><span>Salinization triggers a trophic cascade in experimental freshwater <span class="hlt">communities</span> with varying food-chain length.</span></a></p> <p><a target="_blank" href="https://www.ncbi.nlm.nih.gov/entrez/query.fcgi?DB=pubmed">PubMed</a></p> <p>Hintz, William D; Mattes, Brian M; Schuler, Matthew S; Jones, Devin K; Stoler, Aaron B; Lind, Lovisa; Relyea, Rick A</p> <p>2017-04-01</p> <p>The application of road deicing salts in northern regions worldwide is changing the chemical environment of freshwater ecosystems. Chloride levels in many lakes, streams, and wetlands exceed the chronic and acute thresholds established by the United States and Canada for the protection of freshwater biota. Few studies have identified the impacts of deicing salts in stream and wetland <span class="hlt">communities</span> and none have examined impacts in lake <span class="hlt">communities</span>. We tested how relevant concentrations of road salt (15, 100, 250, 500, and 1000 mg Cl - /L) interacted with experimental <span class="hlt">communities</span> containing two or three trophic levels (i.e., no fish vs. predatory fish). We hypothesized that road salt and fish would have a negative synergistic effect on <span class="hlt">zooplankton</span>, which would then induce a trophic cascade. We tested this hypothesis in outdoor mesocosms containing filamentous algae, periphyton, phytoplankton, <span class="hlt">zooplankton</span>, several macroinvertebrate species, and fish. We found that the presence of fish and high salt had a negative synergistic effect on the <span class="hlt">zooplankton</span> <span class="hlt">community</span>, which in turn caused an increase in phytoplankton. Contributing to the magnitude of this trophic cascade was a direct positive effect of high salinity on phytoplankton abundance. Cascading effects were limited with respect to impacts on the benthic food web. Periphyton and snail grazers were unaffected by the salt-induced trophic cascade, but the biomass of filamentous algae decreased as a result of competition with phytoplankton for light or nutrients. We also found direct negative effects of high salinity on the biomass of filamentous algae and amphipods (Hyalella azteca) and the mortality of banded mystery snails (Viviparus georgianus) and fingernail clams (Sphaerium simile). Clam mortality was dependent on the presence of fish, suggesting a non-consumptive interactive effect with salt. Our results indicate that globally increasing concentrations of road salt can alter <span class="hlt">community</span> structure via both direct</p> </li> <li> <p><a target="_blank" onclick="trackOutboundLink('http://adsabs.harvard.edu/abs/2014AGUFM.B31K..04H','NASAADS'); return false;" href="http://adsabs.harvard.edu/abs/2014AGUFM.B31K..04H"><span>Carbon availability structures microbial <span class="hlt">community</span> <span class="hlt">composition</span> and function in soil aggregate fractions</span></a></p> <p><a target="_blank" href="http://adsabs.harvard.edu/abstract_service.html">NASA Astrophysics Data System (ADS)</a></p> <p>Hofmockel, K. S.; Bach, E.; Williams, R.; Howe, A.</p> <p>2014-12-01</p> <p>Identifying the microbial metabolic pathways that most strongly influence ecosystem carbon (C) cycling requires a deeper understanding of the availability and accessibility of microbial substrates. A first step towards this goal is characterizing the relationships between microbial <span class="hlt">community</span> function and soil C chemistry in a field context. For this perspective, soil aggregate fractions can be used as model systems that scale between microbe-substrate interactions and ecosystem C cycling and storage. The present study addresses how physicochemical variation among soil aggregate fractions influences the <span class="hlt">composition</span> and functional potential of C cycling microbial <span class="hlt">communities</span>. We report variation across soil aggregates using plot scale biological replicates from biofuel agroecosystems (fertilized, reconstructed, tallgrass prairie). Our results suggest that C and nitrogen (N) chemistry significantly differ among aggregate fractions. This leads to variation in microbial <span class="hlt">community</span> <span class="hlt">composition</span>, which was better characterized among aggregates than by using the whole soil. In fact by considering soil aggregation, we were able to characterize almost 2000 more taxa than whole soil alone, resulting in 65% greater <span class="hlt">community</span> richness. Availability of C and N strongly influenced the <span class="hlt">composition</span> of microbial <span class="hlt">communities</span> among soil aggregate fractions. The normalized abundance of microbial functional guilds among aggregate fractions correlated with C and N chemistry, as did functional potential, measured by extracellular enzyme activity. Metagenomic results suggest that soil aggregate fractions select for functionally distinct microbial <span class="hlt">communities</span>, which may significantly influence decomposition and soil C storage. Our study provides support for the premise that integration of soil aggregate chemistry, especially microaggregates that have greater microbial richness and occur at spatial scales relevant to microbial <span class="hlt">community</span> functioning, may be necessary to understand the role of</p> </li> <li> <p><a target="_blank" onclick="trackOutboundLink('https://www.osti.gov/pages/biblio/1418265-bacterial-community-composition-dynamics-spanning-five-years-freshwater-bog-lakes','SCIGOV-DOEP'); return false;" href="https://www.osti.gov/pages/biblio/1418265-bacterial-community-composition-dynamics-spanning-five-years-freshwater-bog-lakes"><span>Bacterial <span class="hlt">Community</span> <span class="hlt">Composition</span> and Dynamics Spanning Five Years in Freshwater Bog Lakes</span></a></p> <p><a target="_blank" href="http://www.osti.gov/pages">DOE PAGES</a></p> <p>Linz, Alexandra M.; Crary, Benjamin C.; Shade, Ashley; ...</p> <p>2017-06-28</p> <p>Bacteria play a key role in freshwater biogeochemical cycling, but long-term trends in freshwater bacterial <span class="hlt">community</span> <span class="hlt">composition</span> and dynamics are not yet well characterized. We used a multiyear time series of 16S rRNA gene amplicon sequencing data from eight bog lakes to census the freshwater bacterial <span class="hlt">community</span> and observe annual and seasonal trends in abundance. The sites that we studied encompassed a range of water column mixing frequencies, which we hypothesized would be associated with trends in alpha and beta diversity. Each lake and layer contained a distinct bacterial <span class="hlt">community</span>, with distinct levels of richness and indicator taxa that likelymore » reflected the environmental conditions of each lake type sampled, including Actinobacteria in polymictic lakes (i.e., lakes with multiple mixing events per year), Methylophilales in dimictic lakes (lakes with two mixing events per year, usually in spring and fall), and “CandidatusOmnitrophica” in meromictic lakes (lakes with no recorded mixing events). The <span class="hlt">community</span> present during each year at each site was also surprisingly unique. Despite unexpected interannual variability in <span class="hlt">community</span> <span class="hlt">composition</span>, we detected a core <span class="hlt">community</span> of taxa found in all lakes and layers, including Actinobacteria tribe acI-B2 and Betaprotobacteria lineage PnecC. Although trends in abundance did not repeat annually, each freshwater lineage within the <span class="hlt">communities</span> had a consistent lifestyle, defined by persistence, abundance, and variability. The results of our analysis emphasize the importance of long-term multisite observations, as analyzing only a single year of data or one lake would not have allowed us to describe the dynamics and <span class="hlt">composition</span> of these freshwater bacterial <span class="hlt">communities</span> to the extent presented here. Lakes are excellent systems for investigating bacterial <span class="hlt">community</span> dynamics because they have clear boundaries and strong environmental gradients. The results of our research demonstrate that bacterial <span class="hlt">community</span></p> </li> <li> <p><a target="_blank" onclick="trackOutboundLink('https://www.osti.gov/servlets/purl/1418265','SCIGOV-STC'); return false;" href="https://www.osti.gov/servlets/purl/1418265"><span>Bacterial <span class="hlt">Community</span> <span class="hlt">Composition</span> and Dynamics Spanning Five Years in Freshwater Bog Lakes</span></a></p> <p><a target="_blank" href="http://www.osti.gov/search">DOE Office of Scientific and Technical Information (OSTI.GOV)</a></p> <p>Linz, Alexandra M.; Crary, Benjamin C.; Shade, Ashley</p> <p></p> <p>Bacteria play a key role in freshwater biogeochemical cycling, but long-term trends in freshwater bacterial <span class="hlt">community</span> <span class="hlt">composition</span> and dynamics are not yet well characterized. We used a multiyear time series of 16S rRNA gene amplicon sequencing data from eight bog lakes to census the freshwater bacterial <span class="hlt">community</span> and observe annual and seasonal trends in abundance. The sites that we studied encompassed a range of water column mixing frequencies, which we hypothesized would be associated with trends in alpha and beta diversity. Each lake and layer contained a distinct bacterial <span class="hlt">community</span>, with distinct levels of richness and indicator taxa that likelymore » reflected the environmental conditions of each lake type sampled, including Actinobacteria in polymictic lakes (i.e., lakes with multiple mixing events per year), Methylophilales in dimictic lakes (lakes with two mixing events per year, usually in spring and fall), and “CandidatusOmnitrophica” in meromictic lakes (lakes with no recorded mixing events). The <span class="hlt">community</span> present during each year at each site was also surprisingly unique. Despite unexpected interannual variability in <span class="hlt">community</span> <span class="hlt">composition</span>, we detected a core <span class="hlt">community</span> of taxa found in all lakes and layers, including Actinobacteria tribe acI-B2 and Betaprotobacteria lineage PnecC. Although trends in abundance did not repeat annually, each freshwater lineage within the <span class="hlt">communities</span> had a consistent lifestyle, defined by persistence, abundance, and variability. The results of our analysis emphasize the importance of long-term multisite observations, as analyzing only a single year of data or one lake would not have allowed us to describe the dynamics and <span class="hlt">composition</span> of these freshwater bacterial <span class="hlt">communities</span> to the extent presented here. Lakes are excellent systems for investigating bacterial <span class="hlt">community</span> dynamics because they have clear boundaries and strong environmental gradients. The results of our research demonstrate that bacterial <span class="hlt">community</span></p> </li> <li> <p><a target="_blank" onclick="trackOutboundLink('https://www.ncbi.nlm.nih.gov/pubmed/18553170','PUBMED'); return false;" href="https://www.ncbi.nlm.nih.gov/pubmed/18553170"><span>Shifts in microbial <span class="hlt">community</span> <span class="hlt">composition</span> following surface application of dredged river sediments.</span></a></p> <p><a target="_blank" href="https://www.ncbi.nlm.nih.gov/entrez/query.fcgi?DB=pubmed">PubMed</a></p> <p>Baniulyte, Dovile; Favila, Emmanuel; Kelly, John J</p> <p>2009-01-01</p> <p>Sediment input to the Illinois River has drastically decreased river depth and reduced habitats for aquatic organisms. Dredging is being used to remove sediment from the Illinois River, and the dredged sediment is being applied to the surface of a brownfield site in Chicago with the goal of revegetating the site. In order to determine the effects of this drastic habitat change on sediment microbial <span class="hlt">communities</span>, we examined sediment physical, chemical, and microbial characteristics at the time of sediment application to the soil surface as well as 1 and 2 years after application. Microbial <span class="hlt">community</span> biomass was determined by measurement of lipid phosphate. Microbial <span class="hlt">community</span> <span class="hlt">composition</span> was assessed using phospholipid fatty acid (PLFA) analysis, terminal restriction fragment length polymorphism (T-RFLP) analysis of 16S rRNA genes, and clone library sequencing of 16S rRNA genes. Results indicated that the moisture content, organic carbon, and total nitrogen content of the sediment all decreased over time. Total microbial biomass did not change over the course of the study, but there were significant changes in the <span class="hlt">composition</span> of the microbial <span class="hlt">communities</span>. PLFA analysis revealed relative increases in fungi, actinomycetes, and Gram positive bacteria. T-RFLP analysis indicated a significant shift in bacterial <span class="hlt">community</span> <span class="hlt">composition</span> within 1 year of application, and clone library analysis revealed relative increases in Proteobacteria, Gemmatimonadetes, and Bacteriodetes and relative decreases in Acidobacteria, Spirochaetes, and Planctomycetes. These results provide insight into microbial <span class="hlt">community</span> shifts following land application of dredged sediment.</p> </li> <li> <p><a target="_blank" onclick="trackOutboundLink('https://www.pubmedcentral.nih.gov/articlerender.fcgi?tool=pmcentrez&artid=4552639','PMC'); return false;" href="https://www.pubmedcentral.nih.gov/articlerender.fcgi?tool=pmcentrez&artid=4552639"><span>Influence of Tree Species <span class="hlt">Composition</span> and <span class="hlt">Community</span> Structure on Carbon Density in a Subtropical Forest</span></a></p> <p><a target="_blank" href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?DB=pmc">PubMed Central</a></p> <p>Hu, Yanqiu; Su, Zhiyao; Li, Wenbin; Li, Jingpeng; Ke, Xiandong</p> <p>2015-01-01</p> <p>We assessed the impact of species <span class="hlt">composition</span> and stand structure on the spatial variation of forest carbon density using data collected from a 4-ha plot in a subtropical forest in southern China. We found that 1) forest biomass carbon density significantly differed among <span class="hlt">communities</span>, reflecting a significant effect of <span class="hlt">community</span> structure and species <span class="hlt">composition</span> on carbon accumulation; 2) soil organic carbon density increased whereas stand biomass carbon density decreased across <span class="hlt">communities</span>, indicating that different mechanisms might account for the accumulation of stand biomass carbon and soil organic carbon in the subtropical forest; and 3) a small number of tree individuals of the medium- and large-diameter class contributed predominantly to biomass carbon accumulation in the <span class="hlt">community</span>, whereas a large number of seedlings and saplings were responsible for a small proportion of the total forest carbon stock. These findings demonstrate that both biomass carbon and soil carbon density in the subtropical forest are sensitive to species <span class="hlt">composition</span> and <span class="hlt">community</span> structure, and that heterogeneity in species <span class="hlt">composition</span> and stand structure should be taken into account to ensure accurate forest carbon accounting. PMID:26317523</p> </li> <li> <p><a target="_blank" onclick="trackOutboundLink('https://www.ncbi.nlm.nih.gov/pubmed/26317523','PUBMED'); return false;" href="https://www.ncbi.nlm.nih.gov/pubmed/26317523"><span>Influence of Tree Species <span class="hlt">Composition</span> and <span class="hlt">Community</span> Structure on Carbon Density in a Subtropical Forest.</span></a></p> <p><a target="_blank" href="https://www.ncbi.nlm.nih.gov/entrez/query.fcgi?DB=pubmed">PubMed</a></p> <p>Hu, Yanqiu; Su, Zhiyao; Li, Wenbin; Li, Jingpeng; Ke, Xiandong</p> <p>2015-01-01</p> <p>We assessed the impact of species <span class="hlt">composition</span> and stand structure on the spatial variation of forest carbon density using data collected from a 4-ha plot in a subtropical forest in southern China. We found that 1) forest biomass carbon density significantly differed among <span class="hlt">communities</span>, reflecting a significant effect of <span class="hlt">community</span> structure and species <span class="hlt">composition</span> on carbon accumulation; 2) soil organic carbon density increased whereas stand biomass carbon density decreased across <span class="hlt">communities</span>, indicating that different mechanisms might account for the accumulation of stand biomass carbon and soil organic carbon in the subtropical forest; and 3) a small number of tree individuals of the medium- and large-diameter class contributed predominantly to biomass carbon accumulation in the <span class="hlt">community</span>, whereas a large number of seedlings and saplings were responsible for a small proportion of the total forest carbon stock. These findings demonstrate that both biomass carbon and soil carbon density in the subtropical forest are sensitive to species <span class="hlt">composition</span> and <span class="hlt">community</span> structure, and that heterogeneity in species <span class="hlt">composition</span> and stand structure should be taken into account to ensure accurate forest carbon accounting.</p> </li> <li> <p><a target="_blank" onclick="trackOutboundLink('https://www.ncbi.nlm.nih.gov/pubmed/29043048','PUBMED'); return false;" href="https://www.ncbi.nlm.nih.gov/pubmed/29043048"><span>Do temperate tree species diversity and identity influence soil microbial <span class="hlt">community</span> function and <span class="hlt">composition</span>?</span></a></p> <p><a target="_blank" href="https://www.ncbi.nlm.nih.gov/entrez/query.fcgi?DB=pubmed">PubMed</a></p> <p>Khlifa, Rim; Paquette, Alain; Messier, Christian; Reich, Peter B; Munson, Alison D</p> <p>2017-10-01</p> <p>Studies of biodiversity-ecosystem function in treed ecosystems have generally focused on aboveground functions. This study investigates intertrophic links between tree diversity and soil microbial <span class="hlt">community</span> function and <span class="hlt">composition</span>. We examined how microbial <span class="hlt">communities</span> in surface mineral soil responded to experimental gradients of tree species richness (SR), functional diversity (FD), <span class="hlt">community</span>-weighted mean trait value (CWM), and tree identity. The site was a 4-year-old common garden experiment near Montreal, Canada, consisting of deciduous and evergreen tree species mixtures. Microbial <span class="hlt">community</span> <span class="hlt">composition</span>, <span class="hlt">community</span>-level physiological profiles, and respiration were evaluated using phospholipid fatty acid (PLFA) analysis and the MicroResp ™ system, respectively. The relationship between tree species richness and glucose-induced respiration (GIR), basal respiration (BR), metabolic quotient (qCO 2 ) followed a positive but saturating shape. Microbial <span class="hlt">communities</span> associated with species mixtures were more active (basal respiration [BR]), with higher biomass (glucose-induced respiration [GIR]), and used a greater number of carbon sources than monocultures. <span class="hlt">Communities</span> associated with deciduous tree species used a greater number of carbon sources than those associated with evergreen species, suggesting a greater soil carbon storage capacity. There were no differences in microbial <span class="hlt">composition</span> (PLFA) between monocultures and SR mixtures. The FD and the CWM of several functional traits affected both BR and GIR. In general, the CWM of traits had stronger effects than did FD, suggesting that certain traits of dominant species have more effect on ecosystem processes than does FD. Both the functions of GIR and BR were positively related to aboveground tree <span class="hlt">community</span> productivity. Both tree diversity (SR) and identity (species and functional identity-leaf habit) affected soil microbial <span class="hlt">community</span> respiration, biomass, and <span class="hlt">composition</span>. For the first time, we identified</p> </li> <li> <p><a target="_blank" onclick="trackOutboundLink('https://pubs.er.usgs.gov/publication/70028740','USGSPUBS'); return false;" href="https://pubs.er.usgs.gov/publication/70028740"><span>Response of microbial <span class="hlt">community</span> <span class="hlt">composition</span> and function to soil climate change</span></a></p> <p><a target="_blank" href="http://pubs.er.usgs.gov/pubs/index.jsp?view=adv">USGS Publications Warehouse</a></p> <p>Waldrop, M.P.; Firestone, M.K.</p> <p>2006-01-01</p> <p>Soil microbial <span class="hlt">communities</span> mediate critical ecosystem carbon and nutrient cycles. How microbial <span class="hlt">communities</span> will respond to changes in vegetation and climate, however, are not well understood. We reciprocally transplanted soil cores from under oak canopies and adjacent open grasslands in a California oak-grassland ecosystem to determine how microbial <span class="hlt">communities</span> respond to changes in the soil environment and the potential consequences for the cycling of carbon. Every 3 months for up to 2 years, we monitored microbial <span class="hlt">community</span> <span class="hlt">composition</span> using phospholipid fatty acid analysis (PLFA), microbial biomass, respiration rates, microbial enzyme activities, and the activity of microbial groups by quantifying 13C uptake from a universal substrate (pyruvate) into PLFA biomarkers. Soil in the open grassland experienced higher maximum temperatures and lower soil water content than soil under the oak canopies. Soil microbial <span class="hlt">communities</span> in soil under oak canopies were more sensitive to environmental change than those in adjacent soil from the open grassland. Oak canopy soil <span class="hlt">communities</span> changed rapidly when cores were transplanted into the open grassland soil environment, but grassland soil <span class="hlt">communities</span> did not change when transplanted into the oak canopy environment. Similarly, microbial biomass, enzyme activities, and microbial respiration decreased when microbial <span class="hlt">communities</span> were transplanted from the oak canopy soils to the grassland environment, but not when the grassland <span class="hlt">communities</span> were transplanted to the oak canopy environment. These data support the hypothesis that microbial <span class="hlt">community</span> <span class="hlt">composition</span> and function is altered when microbes are exposed to new extremes in environmental conditions; that is, environmental conditions outside of their "life history" envelopes. ?? 2006 Springer Science+Business Media, Inc.</p> </li> <li> <p><a target="_blank" onclick="trackOutboundLink('http://www.dtic.mil/docs/citations/ADA248282','DTIC-ST'); return false;" href="http://www.dtic.mil/docs/citations/ADA248282"><span>Distribution and Taxonomy of <span class="hlt">Zooplankton</span> in the Alboran Sea and Adjacent Western Mediterranean: A Literature Survey and Field Guide</span></a></p> <p><a target="_blank" href="http://www.dtic.mil/">DTIC Science & Technology</a></p> <p></p> <p>1991-09-01</p> <p>Distribution List for Technical Report Exchange I Attn: Stella Sanchez-Wade Pell Marine Science Library Documents Section University of Rhode IslandU...partly on the geographic distribution of marine laboratories on the coasts of these seas. Upwelling regions near Messina, Naples and Nice in the...into three main sections . The first considers gjneral patterns of <span class="hlt">zooplankton</span> distribution. This is intended as an overview of hydrography, <span class="hlt">zooplankton</span></p> </li> <li> <p><a target="_blank" onclick="trackOutboundLink('http://adsabs.harvard.edu/abs/2016ChJOL..34.1143Z','NASAADS'); return false;" href="http://adsabs.harvard.edu/abs/2016ChJOL..34.1143Z"><span>The <span class="hlt">community</span> structure and seasonal dynamics of plankton in Bange Lake, northern Tibet, China</span></a></p> <p><a target="_blank" href="http://adsabs.harvard.edu/abstract_service.html">NASA Astrophysics Data System (ADS)</a></p> <p>Zhao, Wen; Zhao, Yuanyi; Wang, Qiaohan; Zheng, Mianping; Wei, Jie; Wang, Shan</p> <p>2016-11-01</p> <p>The seasonal variations in biomass, abundance, and species <span class="hlt">composition</span> of plankton in relation to hydrography were studied in the saline Bange Lake, northern Tibet, China. Sampling was carried out between one to three times per month from May 2001 to July 2002. Salinity ranged from 14 to 146. The air and water temperature exhibited a clear seasonal pattern, and mean annual temperatures were approximately 4.8°C and 7.3°C, respectively. The lowest water temperature occurred in winter from December to March at -2°C and the highest in June and July at 17.7°C. Forty-one phytoplankton taxa, 21 <span class="hlt">zooplankton</span>, and 5 benthic or facultative <span class="hlt">zooplankton</span> were identified. The predominant phytoplankton species were Gloeothece linearis, Oscillatoria tenuis, Gloeocapsa punctata, Ctenocladus circinnatus, Dunaliella salina, and Spirulina major. The predominant <span class="hlt">zooplankton</span> species included Holophrya actra, Brachionus plicatilis, Daphniopsis tibetana, Cletocamptus dertersi, and Arctodiaptomus salinus. The mean annual total phytoplankton density and biomass for the entire lake were 4.52×107 cells/L and 1.60 mg/L, respectively. The annual mean <span class="hlt">zooplankton</span> abundance was 52, 162, 322, and 57, 144 ind./L, in the three sublakes. The annual mean total <span class="hlt">zooplankton</span> biomass in Lakes 1-3 was 1.23, 9.98, and 2.13 mg/L, respectively. The annual mean tychoplankton abundances in Bg1, 2, and 3 were 47, 67, and 654 ind./L. The annual mean tychoplankton biomass was 2.36, 0.16, and 2.03 mg/L, respectively. The <span class="hlt">zooplankton</span> biomass (including tychoplankton) in the lake was 9.11 mg/L. The total number of plankton species in the salt lake was significantly negatively correlated with salinity.</p> </li> <li> <p><a target="_blank" onclick="trackOutboundLink('https://www.pubmedcentral.nih.gov/articlerender.fcgi?tool=pmcentrez&artid=4713446','PMC'); return false;" href="https://www.pubmedcentral.nih.gov/articlerender.fcgi?tool=pmcentrez&artid=4713446"><span>Linking the <span class="hlt">Composition</span> of Bacterial and Archaeal <span class="hlt">Communities</span> to Characteristics of Soil and Flora <span class="hlt">Composition</span> in the Atlantic Rainforest</span></a></p> <p><a target="_blank" href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?DB=pmc">PubMed Central</a></p> <p>Lima-Perim, Julia Elidia; Romagnoli, Emiliana Manesco; Dini-Andreote, Francisco; Durrer, Ademir; Dias, Armando Cavalcante Franco; Andreote, Fernando Dini</p> <p>2016-01-01</p> <p>The description of microbiomes as intrinsic fractions of any given ecosystem is an important issue, for instance, by linking their <span class="hlt">compositions</span> and functions with other biotic and abiotic components of natural systems and hosts. Here we describe the archaeal and bacterial <span class="hlt">communities</span> from soils of the Atlantic Rainforest in Brazil. Based on the comparison of three areas located along an altitudinal gradient—namely, Santa Virginia, Picinguaba and Restinga—we detected the most abundant groups of Bacteria (Acidobacteria and Proteobacteria) and Archaea (Thaumarchaeota, Crenarchaeota and Euryarchaeota). The particular <span class="hlt">composition</span> of such <span class="hlt">communities</span> in each of these areas was first evidenced by PCR-DGGE patterns [determined for Bacteria, Archaea and ammonia-oxidizing organisms—ammonia-oxidizing archaea (AOA) and bacteria (AOB)]. Moreover, sequence-based analysis provided a better resolution of <span class="hlt">communities</span>, which indicated distinct frequencies of archaeal phyla and bacterial OTUs across areas. We found, as indicated by the Mantel test and multivariate analyses, a potential effect of the flora <span class="hlt">composition</span> that outpaces the effect of soil characteristics (either physical and chemical) influencing the assembly of these microbial <span class="hlt">communities</span> in soils. Our results indicate a collective role of the ecosystem underlying observed differences in microbial <span class="hlt">communities</span> in these soils. Particularly, we posit that rainforest preservation also needs to take into account the maintenance of the soil biodiversity, as this is prompted to influence major processes that affect ecosystem functioning. PMID:26752633</p> </li> <li> <p><a target="_blank" onclick="trackOutboundLink('https://www.ncbi.nlm.nih.gov/pubmed/26752633','PUBMED'); return false;" href="https://www.ncbi.nlm.nih.gov/pubmed/26752633"><span>Linking the <span class="hlt">Composition</span> of Bacterial and Archaeal <span class="hlt">Communities</span> to Characteristics of Soil and Flora <span class="hlt">Composition</span> in the Atlantic Rainforest.</span></a></p> <p><a target="_blank" href="https://www.ncbi.nlm.nih.gov/entrez/query.fcgi?DB=pubmed">PubMed</a></p> <p>Lima-Perim, Julia Elidia; Romagnoli, Emiliana Manesco; Dini-Andreote, Francisco; Durrer, Ademir; Dias, Armando Cavalcante Franco; Andreote, Fernando Dini</p> <p>2016-01-01</p> <p>The description of microbiomes as intrinsic fractions of any given ecosystem is an important issue, for instance, by linking their <span class="hlt">compositions</span> and functions with other biotic and abiotic components of natural systems and hosts. Here we describe the archaeal and bacterial <span class="hlt">communities</span> from soils of the Atlantic Rainforest in Brazil. Based on the comparison of three areas located along an altitudinal gradient-namely, Santa Virginia, Picinguaba and Restinga-we detected the most abundant groups of Bacteria (Acidobacteria and Proteobacteria) and Archaea (Thaumarchaeota, Crenarchaeota and Euryarchaeota). The particular <span class="hlt">composition</span> of such <span class="hlt">communities</span> in each of these areas was first evidenced by PCR-DGGE patterns [determined for Bacteria, Archaea and ammonia-oxidizing organisms-ammonia-oxidizing archaea (AOA) and bacteria (AOB)]. Moreover, sequence-based analysis provided a better resolution of <span class="hlt">communities</span>, which indicated distinct frequencies of archaeal phyla and bacterial OTUs across areas. We found, as indicated by the Mantel test and multivariate analyses, a potential effect of the flora <span class="hlt">composition</span> that outpaces the effect of soil characteristics (either physical and chemical) influencing the assembly of these microbial <span class="hlt">communities</span> in soils. Our results indicate a collective role of the ecosystem underlying observed differences in microbial <span class="hlt">communities</span> in these soils. Particularly, we posit that rainforest preservation also needs to take into account the maintenance of the soil biodiversity, as this is prompted to influence major processes that affect ecosystem functioning.</p> </li> <li> <p><a target="_blank" onclick="trackOutboundLink('http://www.dtic.mil/docs/citations/ADA534940','DTIC-ST'); return false;" href="http://www.dtic.mil/docs/citations/ADA534940"><span>Development of a Method to Determine the Number of Viable Organisms or- 50 micrometers (Nominally <span class="hlt">Zooplankton</span>) in Ships’ Ballast Water: A Combination of Two Vital, Fluorescent Stains</span></a></p> <p><a target="_blank" href="http://www.dtic.mil/">DTIC Science & Technology</a></p> <p></p> <p>2010-04-23</p> <p>dimension: ≥ 50 µm (nominally <span class="hlt">zooplankton</span>), ≥ 10 µm and < 50 µm (nominally protists ), and < 10 µm (nominally bacteria). The IMO convention specifies the... protists comprise a small – but consistently present – fraction of the organisms found in the ≥ 50 µm size class, and many of these protists do...38 to 325 organisms l-1 from July 2008 to July 2009, and the <span class="hlt">community</span> was consistently dominated by crustaceans except during summer protist blooms</p> </li> <li> <p><a target="_blank" onclick="trackOutboundLink('https://www.fs.usda.gov/treesearch/pubs/38728','TREESEARCH'); return false;" href="https://www.fs.usda.gov/treesearch/pubs/38728"><span>The assembly of ecological <span class="hlt">communities</span> inferred from taxonomic and functional <span class="hlt">composition</span></span></a></p> <p><a target="_blank" href="http://www.fs.usda.gov/treesearch/">Treesearch</a></p> <p>Eric R. Sokol; E.F. Benfield; Lisa K. Belden; H. Maurice. Valett</p> <p>2011-01-01</p> <p>Among-site variation in metacommunities (beta diversity) is typically correlated with the distance separating the sites (spatial lag). This distance decay in similarity pattern has been linked to both niche-based and dispersal-based <span class="hlt">community</span> assembly hypotheses. Here we show that beta diversity patterns in <span class="hlt">community</span> <span class="hlt">composition</span>, when supplemented with functional-trait...</p> </li> <li> <p><a target="_blank" onclick="trackOutboundLink('https://www.ncbi.nlm.nih.gov/pubmed/22611850','PUBMED'); return false;" href="https://www.ncbi.nlm.nih.gov/pubmed/22611850"><span><span class="hlt">Compositional</span> stability and diversity of vascular plant <span class="hlt">communities</span> following logging disturbance in Appalachian forests.</span></a></p> <p><a target="_blank" href="https://www.ncbi.nlm.nih.gov/entrez/query.fcgi?DB=pubmed">PubMed</a></p> <p>Belote, R Travis; Jones, Robert H; Wieboldt, Thomas F</p> <p>2012-03-01</p> <p>Human-caused changes in disturbance regimes and introductions of nonnative species have the potential to result in widespread, directional changes in forest <span class="hlt">community</span> structure. The degree that plant <span class="hlt">community</span> <span class="hlt">composition</span> persists or changes following disturbances depends on the balance between local extirpation and colonization by new species, including nonnatives. In this study, we examined species losses and gains, and entry of native vs. exotic species to determine how oak forests in the Appalachian Mountains might shift in species <span class="hlt">composition</span> following a gradient of pulse disturbances (timber harvesting). We asked (1) how <span class="hlt">compositional</span> stability of the plant <span class="hlt">community</span> (resistance and resilience) was influenced by disturbance intensity, (2) whether <span class="hlt">community</span> responses were driven by extirpation or colonization of species, and (3) how disturbance intensity influenced total and functional group diversity, including the nonnative proportion of the flora through time. We collected data at three spatial scales and three times, including just before, one year post-disturbance, and 10 years post-disturbance. Resistance was estimated using <span class="hlt">community</span> distance measures between pre- and one year post-disturbance, and resilience using <span class="hlt">community</span> distance between pre- and 10-year post-disturbance conditions. The number of colonizing and extirpated species between sampling times was analyzed for all species combined and for six functional groups. Resistance and resilience decreased with increasing timber-harvesting disturbance; <span class="hlt">compositional</span> stability was lower in the most disturbed plots, which was driven by colonization, but not extirpation, of species. Colonization of species also led to increases in diversity after disturbance that was typically maintained after 10 years following disturbance. Most of the <span class="hlt">community</span>-level responses were driven by post-disturbance colonization of native forbs and graminoids. The nonnative proportion of plant species tended to increase</p> </li> <li> <p><a target="_blank" onclick="trackOutboundLink('https://www.ncbi.nlm.nih.gov/pubmed/29308572','PUBMED'); return false;" href="https://www.ncbi.nlm.nih.gov/pubmed/29308572"><span>Impact of anthropogenic activities on water quality and plankton <span class="hlt">communities</span> in the Day River (Red River Delta, Vietnam).</span></a></p> <p><a target="_blank" href="https://www.ncbi.nlm.nih.gov/entrez/query.fcgi?DB=pubmed">PubMed</a></p> <p>Hoang, Hang Thi Thu; Duong, Thi Thuy; Nguyen, Kien Trung; Le, Quynh Thi Phuong; Luu, Minh Thi Nguyet; Trinh, Duc Anh; Le, Anh Hung; Ho, Cuong Tu; Dang, Kim Dinh; Némery, Julien; Orange, Didier; Klein, Judith</p> <p>2018-01-08</p> <p>Planktons are a major component of food web structure in aquatic ecosystems. Their distribution and <span class="hlt">community</span> structure are driven by the combination and interactions between physical, chemical, and biological factors within the environment. In the present study, water quality and the <span class="hlt">community</span> structure of phytoplankton and <span class="hlt">zooplankton</span> were monthly investigated from January to December 2015 at 11 sampling sites along the gradient course of the Day River (Red River Delta, northern Vietnam). The study demonstrated that the Day River was eutrophic with the average values of total phosphorus concentration 0.17 mg/L, total nitrogen concentration 1.98 mg/L, and Chl a 54 μg/L. Microscopic plankton analysis showed that phytoplankton comprised 87 species belonging to seven groups in which Chlorophyceae, Bacillariophyceae, and Cyanobacteria accounted for the most important constituents of the river's phytoplankton assemblage. A total 53 <span class="hlt">zooplankton</span> species belonging to three main groups including Copepoda, Cladocera, and Rotatoria were identified. Plankton biomass values were greatest in rainy season (3002.10-3 cell/L for phytoplankton and 12.573 individuals/m 3 for <span class="hlt">zooplankton</span>). Using principal correspondence and Pearson correlation analyses, it was found that the Day River was divided into three main site groups based on water quality and characteristics of plankton <span class="hlt">community</span>. Temperature and nutrients (total phosphorus and total nitrogen) are key factors regulating plankton abundance and distribution in the Day River.</p> </li> </ol> <div class="pull-right"> <ul class="pagination"> <li><a href="#" onclick='return showDiv("page_1");'>«</a></li> <li><a href="#" onclick='return showDiv("page_19");'>19</a></li> <li><a href="#" onclick='return showDiv("page_20");'>20</a></li> <li class="active"><span>21</span></li> <li><a href="#" onclick='return showDiv("page_22");'>22</a></li> <li><a href="#" onclick='return showDiv("page_23");'>23</a></li> <li><a href="#" onclick='return showDiv("page_25");'>»</a></li> </ul> </div> </div><!-- col-sm-12 --> </div><!-- row --> </div><!-- page_21 --> <div id="page_22" class="hiddenDiv"> <div class="row"> <div class="col-sm-12"> <div class="pull-right"> <ul class="pagination"> <li><a href="#" onclick='return showDiv("page_1");'>«</a></li> <li><a href="#" onclick='return showDiv("page_20");'>20</a></li> <li><a href="#" onclick='return showDiv("page_21");'>21</a></li> <li class="active"><span>22</span></li> <li><a href="#" onclick='return showDiv("page_23");'>23</a></li> <li><a href="#" onclick='return showDiv("page_24");'>24</a></li> <li><a href="#" onclick='return showDiv("page_25");'>»</a></li> </ul> </div> </div> </div> <div class="row"> <div class="col-sm-12"> <ol class="result-class" start="421"> <li> <p><a target="_blank" onclick="trackOutboundLink('https://cfpub.epa.gov/si/si_public_record_report.cfm?dirEntryId=106849&keyword=dixit&actType=&TIMSType=+&TIMSSubTypeID=&DEID=&epaNumber=&ntisID=&archiveStatus=Both&ombCat=Any&dateBeginCreated=&dateEndCreated=&dateBeginPublishedPresented=&dateEndPublishedPresented=&dateBeginUpdated=&dateEndUpdated=&dateBeginCompleted=&dateEndCompleted=&personID=&role=Any&journalID=&publisherID=&sortBy=revisionDate&count=50','EPA-EIMS'); return false;" href="https://cfpub.epa.gov/si/si_public_record_report.cfm?dirEntryId=106849&keyword=dixit&actType=&TIMSType=+&TIMSSubTypeID=&DEID=&epaNumber=&ntisID=&archiveStatus=Both&ombCat=Any&dateBeginCreated=&dateEndCreated=&dateBeginPublishedPresented=&dateEndPublishedPresented=&dateBeginUpdated=&dateEndUpdated=&dateBeginCompleted=&dateEndCompleted=&personID=&role=Any&journalID=&publisherID=&sortBy=revisionDate&count=50"><span>CONCORDANCE OF TAXONOMIC <span class="hlt">COMPOSITION</span> PATTERNS ACROSS MULTIPLE LAKE ASSEMBLAGES: EFFECTS OF SCALE, BODY SIZE, AND LAND USE</span></a></p> <p><a target="_blank" href="http://oaspub.epa.gov/eims/query.page">EPA Science Inventory</a></p> <p></p> <p></p> <p>We assessed environmental gradients and the extent to which they induced concordant patterns of taxonomic <span class="hlt">composition</span> among benthic macroinvertebrate, riparian bird, sedimentary diatom, fish, and pelagic <span class="hlt">zooplankton</span> assemblages in 186 northeastern U.S.A. lakes. Human population ...</p> </li> <li> <p><a target="_blank" onclick="trackOutboundLink('https://cfpub.epa.gov/si/si_public_record_report.cfm?dirEntryId=239168&Lab=NHEERL&keyword=marine+AND+pollution&actType=&TIMSType=+&TIMSSubTypeID=&DEID=&epaNumber=&ntisID=&archiveStatus=Both&ombCat=Any&dateBeginCreated=&dateEndCreated=&dateBeginPublishedPresented=&dateEndPublishedPresented=&dateBeginUpdated=&dateEndUpdated=&dateBeginCompleted=&dateEndCompleted=&personID=&role=Any&journalID=&publisherID=&sortBy=revisionDate&count=50','EPA-EIMS'); return false;" href="https://cfpub.epa.gov/si/si_public_record_report.cfm?dirEntryId=239168&Lab=NHEERL&keyword=marine+AND+pollution&actType=&TIMSType=+&TIMSSubTypeID=&DEID=&epaNumber=&ntisID=&archiveStatus=Both&ombCat=Any&dateBeginCreated=&dateEndCreated=&dateBeginPublishedPresented=&dateEndPublishedPresented=&dateBeginUpdated=&dateEndUpdated=&dateBeginCompleted=&dateEndCompleted=&personID=&role=Any&journalID=&publisherID=&sortBy=revisionDate&count=50"><span>Phytoplankton <span class="hlt">community</span> <span class="hlt">composition</span> in nearshore coastal waters of Louisiana</span></a></p> <p><a target="_blank" href="http://oaspub.epa.gov/eims/query.page">EPA Science Inventory</a></p> <p></p> <p></p> <p>Phytoplankton <span class="hlt">community</span> <span class="hlt">compositions</span> within near-shore coastal and estuarine waters of Louisiana were characterized by relative abundance, biovolume, and taxonomic identification to genus and species when possible. The range of total nitrogen was 0.5 to 1.3 mg L-1 and total phos...</p> </li> <li> <p><a target="_blank" onclick="trackOutboundLink('http://adsabs.harvard.edu/abs/2013JMS...113...75C','NASAADS'); return false;" href="http://adsabs.harvard.edu/abs/2013JMS...113...75C"><span>Deep-sea macroplankton distribution (at 400 to 2300 m) in the northwestern Mediterranean in relation to environmental factors</span></a></p> <p><a target="_blank" href="http://adsabs.harvard.edu/abstract_service.html">NASA Astrophysics Data System (ADS)</a></p> <p>Cartes, J. E.; Fanelli, E.; López-Pérez, C.; Lebrato, M.</p> <p>2013-03-01</p> <p>Changes in the <span class="hlt">composition</span> and biomass distribution of deep-living <span class="hlt">zooplankton</span> over wide gradients of depth (400-2300 m) and longitude (~ 180 km) have been analyzed in the Balearic Basin (western Mediterranean), seeking the environmental variables responsible for these changes. <span class="hlt">Zooplankton</span> tends to aggregate at different levels of the water column (forming Deep Scattering Layers, DSL) and in the Benthic Boundary Layer (BBL). Macrozooplankton biomass and <span class="hlt">composition</span> were analyzed along a transect performed in July 2010 in midwater (between ~ 350 and 450 m) and near the bottom (at ~ 5-200 mab), over soundings of 450-2263 m, including the top of Valencia Seamount (at ~ 40° 25' N-02° 42' E, 1076 m). <span class="hlt">Zooplankton</span> changed significantly in <span class="hlt">composition</span> at the mesoscale (~ 180 km) in both the DSL and the BBL. Siphonophores and calanoid copepods were the most dominant deep <span class="hlt">zooplankton</span> taxa, calanoids reaching higher abundance in the BBL (1761-5177 individuals/1000 m3) than in the DSL (1568-1743 individuals/1000 m3). There was a significant increase in near-bottom <span class="hlt">zooplankton</span> biomass over the middle slope, at 1000-1300 m, linked to an increase in scyphozoans and siphonophores (Lensia spp. and Abylopsis tetragona) with peaks of 1.5-2.0 gWW/1000 m3. The peak of near-bottom <span class="hlt">zooplankton</span> at 1000-1300 m coincided with the lowest temperatures (13.08 °C) and maximum O2 concentration (4.40 ml/l) near the bottom and below 1000 m with higher records in near-bottom turbidity. Gelatinous <span class="hlt">zooplankton</span> are the main prey in the diet of the demersal fish Alepocephalus rostratus in the western Mediterranean, fish responsible for the peak of megafauna biomass reported at around 1200-1400 m in the deep Mediterranean and at similar depths in other oceanic areas (e.g. the NW Atlantic). We suggest that deep-sea environmental conditions can govern peaks of near-bottom <span class="hlt">zooplankton</span>, as well as influence the structure of the demersal fish <span class="hlt">community</span>.</p> </li> <li> <p><a target="_blank" onclick="trackOutboundLink('https://www.ncbi.nlm.nih.gov/pubmed/26945871','PUBMED'); return false;" href="https://www.ncbi.nlm.nih.gov/pubmed/26945871"><span>Associations between retail food store exterior advertisements and <span class="hlt">community</span> demographic and socioeconomic <span class="hlt">composition</span>.</span></a></p> <p><a target="_blank" href="https://www.ncbi.nlm.nih.gov/entrez/query.fcgi?DB=pubmed">PubMed</a></p> <p>Isgor, Zeynep; Powell, Lisa; Rimkus, Leah; Chaloupka, Frank</p> <p>2016-05-01</p> <p>This paper examines the association between the prevalence of various types of outdoor food and beverage advertising found on the building exteriors and properties of retail food outlets and <span class="hlt">community</span> racial/ethnic and socioeconomic <span class="hlt">composition</span> in a nationwide sample of food outlets in the U.S. Our major finding from multivariable analysis is that food stores in low-income <span class="hlt">communities</span> have higher prevalence of all food and beverage ads, including those for unhealthy products such as regular soda, controlling for <span class="hlt">community</span> racial/ethnic <span class="hlt">composition</span> and other covariates. This adds to growing research pointing to socioeconomic disparities in food and beverage marketing exposure. Copyright © 2016 Elsevier Ltd. All rights reserved.</p> </li> <li> <p><a target="_blank" onclick="trackOutboundLink('https://www.ncbi.nlm.nih.gov/pubmed/22315826','PUBMED'); return false;" href="https://www.ncbi.nlm.nih.gov/pubmed/22315826"><span>Seasonal variations in <span class="hlt">zooplankton</span> abundances in the Iturbide reservoir (Isidro Fabela, State of Mexico, Mexico).</span></a></p> <p><a target="_blank" href="https://www.ncbi.nlm.nih.gov/entrez/query.fcgi?DB=pubmed">PubMed</a></p> <p>Sarma, S S S; Osnaya-Espinosa, Lidia Rosario; Aguilar-Acosta, Claudia Romina; Nandini, S</p> <p>2011-07-01</p> <p>This studywas undertaken to quantify the seasonal variations of <span class="hlt">zooplankton</span> (rotifers, cladocerans and copepods) and selected physico-chemical variables (temperature, pH, conductivity, Secchi disc transparency, dissolved oxygen, ammonia, nitrate and phosphate concentrations) in the Iturbide dam. Monthly <span class="hlt">zooplankton</span> samples (50 l filtered through 50 microm mesh, in duplicates from each of the 4 stations) were collected from February 2008 to January 2009. Simultaneously physico-chemical variables were measured. The <span class="hlt">zooplankton</span> samples were fixed in 4% formalin in the field. In general, the temperature ranged from 9 to 16 degrees C, rarely exceeding 20 degrees C. Secchi transparency was nearly 100% since the reservoir was shallow (< 2 m) even during the rainy seasons. Dissolved oxygen was generally high, 13-18 mg l(-1). Nitrate levels (10 to 170 microg l(-1)) were low while phosphates were relatively high (9 to 35 microg l(-1)). The Iturbide reservoir was dominated by rotifer species. We encountered in all, 55 taxa of rotifers, 9 cladocerans and 2 copepods. The rotifer families Trichocercidae and Notommatidae had the highest number of species (7 each) followed by Colurellidae and Lecanidae (6 and 5 species, respectively). Trichocerca elongata, Ascomorpha ovalis, K. americana, K. cochlearis, Lepadella patella and Pompholyx sulcata were the dominant rotifers during the study period. On an annual average, rotifer density ranged between 50-200 ind.(-1). Among crustaceans Chydorus brevilabris and Macrothrix triserialis were most abundant. The maximal density of these cladocerans was about 50 ind. l(-1). Copepods were much lower in numbers (< 20 ind. l(-1)). In general the density of <span class="hlt">zooplankton</span> was higher during summer months (April to July) than during winter. Shannon-Wiener diversity index varied from 1.0 to 4.3 depending on the site and the sampling period. Based on the data of Secchi transparency and nutrient concentrations, the Iturbide reservoir appeared to be</p> </li> <li> <p><a target="_blank" onclick="trackOutboundLink('http://adsabs.harvard.edu/abs/2016AGUOS.B33A..05C','NASAADS'); return false;" href="http://adsabs.harvard.edu/abs/2016AGUOS.B33A..05C"><span>Grazing by <span class="hlt">Zooplankton</span> on Diazotrophs in the Amazon River Plume and Western Tropical North Atlantic</span></a></p> <p><a target="_blank" href="http://adsabs.harvard.edu/abstract_service.html">NASA Astrophysics Data System (ADS)</a></p> <p>Conroy, B.; Steinberg, D. K.; Song, B.; Foster, R.</p> <p>2016-02-01</p> <p>Organisms capable of fixing di-nitrogen (N2), known as diazotrophs, are important primary producers and a potentially significant source for new nitrogen entering the planktonic food web. However, limited evidence exists for <span class="hlt">zooplankton</span> grazing on diazotrophs compared to other primary producers. In the western tropical North Atlantic Ocean (WTNA), the Amazon River plume creates a niche for symbiotic diatom-diazotroph associations (DDAs) which can form large blooms. In adjacent non-plume-influenced waters, the colonial cyanobacterium Trichodesmium is abundant. In order to reveal <span class="hlt">zooplankton</span>-diazotroph grazing interactions and determine the fate of newly fixed nitrogen, gut contents of <span class="hlt">zooplankton</span> captured in these two regions were compared based on quantitative PCR (qPCR) assay of nitrogenase genes (nifH), and their microbiomes compared using next generation sequencing (NGS) analysis of 16S rRNA genes. We sampled individual copepods from discrete depth intervals (0-25m and 25-50m) and in two size classes (0.5-1mm and 1-2mm) for analysis. A modified DNA extraction protocol was developed and 54 extracts were used as templates in nifH qPCR assays for the larger size fraction diazotrophs (>10µm): Trichodesmium, and Hemiaulus or Rhizosolenia (diatoms)-Richelia (diazotroph) associations. Copepod gut content nifH copies ranged from 1.6 to 13.6 copies individual-1 for the assay targeting the Hemiaulus-Richelia DDA and from 1.1 to 3.0 copies individual-1 for Trichodesmium. 16S NGS conducted on 35 extracts with an Ion Torrent PGM and mothur revealed that cyanobacteria sequences accounted for up to 20% of sequences per extract. Our results show that both DDAs and Trichodesmium are prey for <span class="hlt">zooplankton</span>, and that new nitrogen moves through the food web via these grazing interactions. These interactions should be considered in future explorations of the global ocean nitrogen cycle.</p> </li> <li> <p><a target="_blank" onclick="trackOutboundLink('http://adsabs.harvard.edu/abs/2016EGUGA..18.2958U','NASAADS'); return false;" href="http://adsabs.harvard.edu/abs/2016EGUGA..18.2958U"><span>Effects of long-term drainage on microbial <span class="hlt">community</span> <span class="hlt">composition</span> vary between peatland types</span></a></p> <p><a target="_blank" href="http://adsabs.harvard.edu/abstract_service.html">NASA Astrophysics Data System (ADS)</a></p> <p>Urbanová, Zuzana; Barta, Jiri</p> <p>2016-04-01</p> <p>Peatlands represent an important reservoir of carbon, but their functioning can be threatened by water level drawdown caused by climate or land use change. Knowledge of how microbial <span class="hlt">communities</span> respond to long-term drainage in different peatland types could help improve predictions of the effect of climate change on these ecosystems. We investigated the effect of long-term drainage on microbial <span class="hlt">community</span> <span class="hlt">composition</span> in bog, fen and spruce swamp forests (SSF) in the Sumava Mountains (Czech Republic), using high-throughput barcoded sequencing, in relation to peat biochemical properties. Longterm drainage had substantial effects, which depended strongly on peatland type, on peat biochemical properties and microbial <span class="hlt">community</span> <span class="hlt">composition</span>. The effect of drainage was most apparent on fen, followed by SSF, and lowest on bog. Long-term drainage led to lower pH, reduced peat decomposability and increased bulk density, which was reflected by reduced microbial activity. Bacterial diversity decreased and Acidobacteria became the dominant phylum on drained sites, reflecting a convergence in bacterial <span class="hlt">community</span> <span class="hlt">composition</span> across peatlands after long-term drainage. The archaeal <span class="hlt">communities</span> changed very strongly and became similar across drained peatlands. Overall, the characteristic differences between distinct peatland types under natural conditions were diminished by long-term drainage. Bog represented a relatively resilient system while fen seemed to be very sensitive to environmental changes.</p> </li> <li> <p><a target="_blank" onclick="trackOutboundLink('https://www.ncbi.nlm.nih.gov/pubmed/28445483','PUBMED'); return false;" href="https://www.ncbi.nlm.nih.gov/pubmed/28445483"><span><span class="hlt">Community</span> barcoding reveals little effect of ocean acidification on the <span class="hlt">composition</span> of coastal plankton <span class="hlt">communities</span>: Evidence from a long-term mesocosm study in the Gullmar Fjord, Skagerrak.</span></a></p> <p><a target="_blank" href="https://www.ncbi.nlm.nih.gov/entrez/query.fcgi?DB=pubmed">PubMed</a></p> <p>Langer, Julia A F; Sharma, Rahul; Schmidt, Susanne I; Bahrdt, Sebastian; Horn, Henriette G; Algueró-Muñiz, María; Nam, Bora; Achterberg, Eric P; Riebesell, Ulf; Boersma, Maarten; Thines, Marco; Schwenk, Klaus</p> <p>2017-01-01</p> <p>The acidification of the oceans could potentially alter marine plankton <span class="hlt">communities</span> with consequences for ecosystem functioning. While several studies have investigated effects of ocean acidification on <span class="hlt">communities</span> using traditional methods, few have used genetic analyses. Here, we use <span class="hlt">community</span> barcoding to assess the impact of ocean acidification on the <span class="hlt">composition</span> of a coastal plankton <span class="hlt">community</span> in a large scale, in situ, long-term mesocosm experiment. High-throughput sequencing resulted in the identification of a wide range of planktonic taxa (Alveolata, Cryptophyta, Haptophyceae, Fungi, Metazoa, Hydrozoa, Rhizaria, Straminipila, Chlorophyta). Analyses based on predicted operational taxonomical units as well as taxonomical <span class="hlt">compositions</span> revealed no differences between <span class="hlt">communities</span> in high CO2 mesocosms (~ 760 μatm) and those exposed to present-day CO2 conditions. Observed shifts in the planktonic <span class="hlt">community</span> <span class="hlt">composition</span> were mainly related to seasonal changes in temperature and nutrients. Furthermore, based on our investigations, the elevated CO2 did not affect the intraspecific diversity of the most common mesozooplankter, the calanoid copepod Pseudocalanus acuspes. Nevertheless, accompanying studies found temporary effects attributed to a raise in CO2. Differences in taxa <span class="hlt">composition</span> between the CO2 treatments could, however, only be observed in a specific period of the experiment. Based on our genetic investigations, no <span class="hlt">compositional</span> long-term shifts of the plankton <span class="hlt">communities</span> exposed to elevated CO2 conditions were observed. Thus, we conclude that the <span class="hlt">compositions</span> of planktonic <span class="hlt">communities</span>, especially those in coastal areas, remain rather unaffected by increased CO2.</p> </li> <li> <p><a target="_blank" onclick="trackOutboundLink('https://www.pubmedcentral.nih.gov/articlerender.fcgi?tool=pmcentrez&artid=5405915','PMC'); return false;" href="https://www.pubmedcentral.nih.gov/articlerender.fcgi?tool=pmcentrez&artid=5405915"><span><span class="hlt">Community</span> barcoding reveals little effect of ocean acidification on the <span class="hlt">composition</span> of coastal plankton <span class="hlt">communities</span>: Evidence from a long-term mesocosm study in the Gullmar Fjord, Skagerrak</span></a></p> <p><a target="_blank" href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?DB=pmc">PubMed Central</a></p> <p>Sharma, Rahul; Schmidt, Susanne I.; Bahrdt, Sebastian; Horn, Henriette G.; Algueró-Muñiz, María; Nam, Bora; Achterberg, Eric P.; Riebesell, Ulf; Boersma, Maarten; Thines, Marco; Schwenk, Klaus</p> <p>2017-01-01</p> <p>The acidification of the oceans could potentially alter marine plankton <span class="hlt">communities</span> with consequences for ecosystem functioning. While several studies have investigated effects of ocean acidification on <span class="hlt">communities</span> using traditional methods, few have used genetic analyses. Here, we use <span class="hlt">community</span> barcoding to assess the impact of ocean acidification on the <span class="hlt">composition</span> of a coastal plankton <span class="hlt">community</span> in a large scale, in situ, long-term mesocosm experiment. High-throughput sequencing resulted in the identification of a wide range of planktonic taxa (Alveolata, Cryptophyta, Haptophyceae, Fungi, Metazoa, Hydrozoa, Rhizaria, Straminipila, Chlorophyta). Analyses based on predicted operational taxonomical units as well as taxonomical <span class="hlt">compositions</span> revealed no differences between <span class="hlt">communities</span> in high CO2 mesocosms (~ 760 μatm) and those exposed to present-day CO2 conditions. Observed shifts in the planktonic <span class="hlt">community</span> <span class="hlt">composition</span> were mainly related to seasonal changes in temperature and nutrients. Furthermore, based on our investigations, the elevated CO2 did not affect the intraspecific diversity of the most common mesozooplankter, the calanoid copepod Pseudocalanus acuspes. Nevertheless, accompanying studies found temporary effects attributed to a raise in CO2. Differences in taxa <span class="hlt">composition</span> between the CO2 treatments could, however, only be observed in a specific period of the experiment. Based on our genetic investigations, no <span class="hlt">compositional</span> long-term shifts of the plankton <span class="hlt">communities</span> exposed to elevated CO2 conditions were observed. Thus, we conclude that the <span class="hlt">compositions</span> of planktonic <span class="hlt">communities</span>, especially those in coastal areas, remain rather unaffected by increased CO2. PMID:28445483</p> </li> <li> <p><a target="_blank" onclick="trackOutboundLink('http://www.dtic.mil/docs/citations/ADA598594','DTIC-ST'); return false;" href="http://www.dtic.mil/docs/citations/ADA598594"><span>Field Demonstration of a Broadband Acoustical Backscattering System Mounted on a REMUS-100 for Inferences of <span class="hlt">Zooplankton</span> Size and Abundancy</span></a></p> <p><a target="_blank" href="http://www.dtic.mil/">DTIC Science & Technology</a></p> <p></p> <p>2011-09-30</p> <p>the Rayleigh-to-geometric scattering transition is within the frequency band of the WHOI broadband system (e.g., copepods ), and either larger fluid...that numerical abundance of <span class="hlt">zooplankton</span> was dominated by small copepods that were relatively evenly distributed throughout the water-column...indication in either the MONESS or the VPR that the acoustic scattering layer was correlated to an increased abundance of <span class="hlt">zooplankton</span>. Small copepods</p> </li> <li> <p><a target="_blank" onclick="trackOutboundLink('https://www.osti.gov/biblio/6698821-stable-isotope-analysis-zooplankton-samples-bowhead-whale-tissues-final-report','SCIGOV-STC'); return false;" href="https://www.osti.gov/biblio/6698821-stable-isotope-analysis-zooplankton-samples-bowhead-whale-tissues-final-report"><span>Stable isotope analysis of 1987-1991 <span class="hlt">zooplankton</span> samples and bowhead whale tissues. Final report</span></a></p> <p><a target="_blank" href="http://www.osti.gov/search">DOE Office of Scientific and Technical Information (OSTI.GOV)</a></p> <p>Schell, D.M.</p> <p>1992-06-01</p> <p>Stable isotope analyses of bowhead whale tissue samples and bowhead whale prey organisms collected over the years 1987 to 1991 were used to provide detail on the isotope ratio gradients evident in the arctic Alaskan <span class="hlt">zooplankton</span> and to verify previous findings regarding the growth rates and age determination techniques developed for bowhead whales. <span class="hlt">Zooplankton</span> of the Bering and Chukchi seas are enriched in (13)C relative to the eastern Beaufort Sea. The analysis of baleen from bowhead whales taken between 1987 to 1990 indicate that the whales are slow-growing and the young animals between year one and about six to sevenmore » years of age, undergo a period of little or no linear growth. The authors estimate that bowheads require 16-18 years to reach the length of sexual maturity, i.e., 13-14 m. From baleen Delta(13C) cycles, a 20 year record of the isotope ratios in the phytoplankton of the northern Bering and Chukchi seas was constructed. The long-term record has been compared with the temperature anomalies in surface waters of the Bering Sea. The Delta(13C) of the <span class="hlt">zooplankton</span> is inversely correlated with temperature and refutes current models attempting to relate ocean temperature, and atmospheric carbon dioxide levels with the Delta(13C) of ocean sediment organic matter.« less</p> </li> <li> <p><a target="_blank" onclick="trackOutboundLink('https://www.pubmedcentral.nih.gov/articlerender.fcgi?tool=pmcentrez&artid=3526175','PMC'); return false;" href="https://www.pubmedcentral.nih.gov/articlerender.fcgi?tool=pmcentrez&artid=3526175"><span>The arthropod, but not the vertebrate host or its environment, dictates bacterial <span class="hlt">community</span> <span class="hlt">composition</span> of fleas and ticks</span></a></p> <p><a target="_blank" href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?DB=pmc">PubMed Central</a></p> <p>Hawlena, Hadas; Rynkiewicz, Evelyn; Toh, Evelyn; Alfred, Andrew; Durden, Lance A; Hastriter, Michael W; Nelson, David E; Rong, Ruichen; Munro, Daniel; Dong, Qunfeng; Fuqua, Clay; Clay, Keith</p> <p>2013-01-01</p> <p>Bacterial <span class="hlt">community</span> <span class="hlt">composition</span> in blood-sucking arthropods can shift dramatically across time and space. We used 16S rRNA gene amplification and pyrosequencing to investigate the relative impact of vertebrate host-related, arthropod-related and environmental factors on bacterial <span class="hlt">community</span> <span class="hlt">composition</span> in fleas and ticks collected from rodents in southern Indiana (USA). Bacterial <span class="hlt">community</span> <span class="hlt">composition</span> was largely affected by arthropod identity, but not by the rodent host or environmental conditions. Specifically, the arthropod group (fleas vs ticks) determined the <span class="hlt">community</span> <span class="hlt">composition</span> of bacteria, where bacterial <span class="hlt">communities</span> of ticks were less diverse and more dependent on arthropod traits—especially tick species and life stage—than bacterial <span class="hlt">communities</span> of fleas. Our data suggest that both arthropod life histories and the presence of arthropod-specific endosymbionts may mask the effects of the vertebrate host and its environment. PMID:22739493</p> </li> <li> <p><a target="_blank" onclick="trackOutboundLink('https://ntrs.nasa.gov/search.jsp?R=20150023392&hterms=Change+climate&qs=Ntx%3Dmode%2Bmatchall%26Ntk%3DAll%26N%3D0%26No%3D80%26Ntt%3DChange%2Bclimate','NASA-TRS'); return false;" href="https://ntrs.nasa.gov/search.jsp?R=20150023392&hterms=Change+climate&qs=Ntx%3Dmode%2Bmatchall%26Ntk%3DAll%26N%3D0%26No%3D80%26Ntt%3DChange%2Bclimate"><span>Climate Variability Drives Plankton <span class="hlt">Community</span> <span class="hlt">Composition</span> Changes: the 2010-2011 El Nino to La Nina Transition Around Australia</span></a></p> <p><a target="_blank" href="http://ntrs.nasa.gov/search.jsp">NASA Technical Reports Server (NTRS)</a></p> <p>Thompson, Peter A.; Bonham, Pru; Thomson, Paul; Rochester, Wayne; Doblin, Martina A.; Waite, Anya M.; Richardson, Anthony; Rousseaux, Cecile S.</p> <p>2015-01-01</p> <p>The strong La Nina of 2010-2011 provided an opportunity to investigate the ecological impacts of El Nino-Southern Oscillation on coastal plankton <span class="hlt">communities</span> using the nine national reference stations around Australia. Based on remote sensing and across the entire Australian region 2011 (La Nina) was only modestly different from 2010 (El Nino) with the average temperature declining 0.2 percent surface chlorophyll a up 3 percent and modelled primary production down 14 percent. Other changes included a poleward shift in Prochlorococcus and Synechococcus. Along the east coast, there was a reduction in salinity, increase in nutrients, Chlorophytes and Prasinophytes (taxa with chlorophyll b, neoxanthin and prasinoxanthin). The southwest region had a rise in the proportion of 19-hexoyloxyfucoxanthin; possibly coccolithophorids in eddies of the Leeuwin Current and along the sub-tropical front. Pennate diatoms increased, Ceratium spp. decreased and Scrippsiella spp. increased in 2011. <span class="hlt">Zooplankton</span> biomass declined significantly in 2011. There was a reduction in the abundance of Calocalanus pavo and Temora turbinata and increases in Clausocalanus farrani, Oncaea scottodicarloi and Macrosetella gracilis in 2011. The changes in the plankton <span class="hlt">community</span> during the strong La Nina of 2011 suggest that this climatic oscillation exacerbates the tropicalization of Australia.</p> </li> <li> <p><a target="_blank" onclick="trackOutboundLink('https://www.ncbi.nlm.nih.gov/pubmed/28312999','PUBMED'); return false;" href="https://www.ncbi.nlm.nih.gov/pubmed/28312999"><span>Patterns of vegetation and grasshopper <span class="hlt">community</span> <span class="hlt">composition</span>.</span></a></p> <p><a target="_blank" href="https://www.ncbi.nlm.nih.gov/entrez/query.fcgi?DB=pubmed">PubMed</a></p> <p>Kemp, W P; Harvey, S J; O'Neill, K M</p> <p>1990-06-01</p> <p>A study was conducted to evaluate differences in rangeland grasshopper <span class="hlt">communities</span> over environmental gradients in Gallatin Valley, Montana, USA. The concept of habitat type (Daubenmire 1966) was used as a basis for discriminating between groupings of patches based on vegetation. A total of 39 patches were selected that represented five recognized grassland habitat types (Mueggler and Stewart 1980), as well as two disturbed types (replanting within a known habitat type). Repeated sampling in 1988 of both the insect and plant <span class="hlt">communities</span> yielded a total of 40 grasshopper (19 664 individuals) and 97 plant species. Detrended Correspondence Analysis (DCA) indicated that patch classifications based on presence and percent cover of plants were appropriate and showed good between-group (habitat type) separation for patches along gradients of precipitation/elevation and plant <span class="hlt">community</span> complexity. Results from undisturbed habitats showed that plant and grasshopper species <span class="hlt">composition</span> changed over observed environmental gradients and suggested that habitat type influenced not only species presence, but also relative abundance. Discussion is presented that relates results with patch-use and core and satellite species paradigms.</p> </li> <li> <p><a target="_blank" onclick="trackOutboundLink('http://adsabs.harvard.edu/abs/2002DSRI...49.2035R','NASAADS'); return false;" href="http://adsabs.harvard.edu/abs/2002DSRI...49.2035R"><span>Acoustic backscatter measurements with a 153 kHz ADCP in the northeastern Gulf of Mexico: determination of dominant <span class="hlt">zooplankton</span> and micronekton scatterers</span></a></p> <p><a target="_blank" href="http://adsabs.harvard.edu/abstract_service.html">NASA Astrophysics Data System (ADS)</a></p> <p>Ressler, Patrick H.</p> <p>2002-11-01</p> <p>A 153 kHz narrowband acoustic Doppler current profiler (ADCP) was used to measure volume backscattering strength ( Sv) during a deepwater oceanographic survey of cetacean and seabird habitat in the northeastern Gulf of Mexico. Sv was positively related to <span class="hlt">zooplankton</span> and micronekton biomass (wet displacement volume) in 'sea-truth' net hauls made with a 1 m 2 Multiple Opening-Closing Net Environmental Sensing System (MOCNESS). A subset of these MOCNESS tows was used to explore the relationship between the numerical densities of various taxonomic categories of <span class="hlt">zooplankton</span> and the ADCP backscatter signal. Crustaceans, small fish, and fragments of non-gas-bearing siphonophores in the net samples all showed significant, positive correlations with the acoustic signal, while other types of gelatinous <span class="hlt">zooplankton</span>, pteropod and atlantid molluscs, and gas-filled siphonophore floats showed no significant correlation with Sv. Previously published acoustic scattering models for <span class="hlt">zooplankton</span> were used to calculate expected scattering for several general <span class="hlt">zooplankton</span> types and sizes for comparison with the field data. Even though gelatinous material often made up a large fraction of the total biomass, crustaceans, small fish, and pteropods were most likely the important scatterers. Since only crustacean and small fish densities were significantly correlated with Sv, it is suggested that Sv at 153 kHz can be used as a relative proxy for the abundance of these organisms in the Gulf of Mexico.</p> </li> <li> <p><a target="_blank" onclick="trackOutboundLink('https://www.ncbi.nlm.nih.gov/pubmed/29883873','PUBMED'); return false;" href="https://www.ncbi.nlm.nih.gov/pubmed/29883873"><span>Modeling species richness and abundance of phytoplankton and <span class="hlt">zooplankton</span> in radioactively contaminated water bodies.</span></a></p> <p><a target="_blank" href="https://www.ncbi.nlm.nih.gov/entrez/query.fcgi?DB=pubmed">PubMed</a></p> <p>Shuryak, Igor</p> <p>2018-06-05</p> <p>Water bodies polluted by the Mayak nuclear plant in Russia provide valuable information on multi-generation effects of radioactive contamination on freshwater organisms. For example, lake Karachay was probably the most radioactive lake in the world: its water contained ∼2 × 10 7 Bq/L of radionuclides and estimated dose rates to plankton exceeded 5 Gy/h. We performed quantitative modeling of radiation effects on phytoplankton and <span class="hlt">zooplankton</span> species richness and abundance in Mayak-contaminated water bodies. Due to collinearity between radioactive contamination, water body size and salinity, we combined these variables into one (called HabitatFactors). We employed a customized machine learning approach, where synthetic noise variables acted as benchmarks of predictor performance. HabitatFactors was the only predictor that outperformed noise variables and, therefore, we used it for parametric modeling of plankton responses. Best-fit model predictions suggested 50% species richness reduction at HabitatFactors values corresponding to dose rates of 10 4 -10 5  μGy/h for phytoplankton, and 10 3 -10 4  μGy/h for <span class="hlt">zooplankton</span>. Under conditions similar to those in lake Karachay, best-fit models predicted 81-98% species richness reductions for various taxa (Cyanobacteria, Bacillariophyta, Chlorophyta, Rotifera, Cladocera and Copepoda), ∼20-300-fold abundance reduction for total <span class="hlt">zooplankton</span>, but no abundance reduction for phytoplankton. Rotifera was the only taxon whose fractional abundance increased with contamination level, reaching 100% in lake Karachay, but Rotifera species richness declined with contamination level, as in other taxa. Under severe radioactive and chemical contamination, one species of Cyanobacteria (Geitlerinema amphibium) dominated phytoplankton, and rotifers from the genus Brachionus dominated <span class="hlt">zooplankton</span>. The modeling approaches proposed here are applicable to other radioecological data sets. The results provide quantitative information</p> </li> <li> <p><a target="_blank" onclick="trackOutboundLink('https://www.osti.gov/servlets/purl/961978','SCIGOV-STC'); return false;" href="https://www.osti.gov/servlets/purl/961978"><span>Lake Roosevelt Fisheries Evaluation Program, Part B; Limnology, Primary Production, and <span class="hlt">Zooplankton</span> in Lake Roosevelt, Washington, 1998 Annual Report.</span></a></p> <p><a target="_blank" href="http://www.osti.gov/search">DOE Office of Scientific and Technical Information (OSTI.GOV)</a></p> <p>Shields, John; Spotts, Jim; Underwood, Keith</p> <p>2002-11-01</p> <p>The Lake Roosevelt Fisheries Evaluation Program is the result of a merger between two projects, the Lake Roosevelt Monitoring Program (BPA No. 8806300) and the Lake Roosevelt Data Collection Project (BPA No. 9404300). These projects were merged in 1996 to continue work historically completed under the separate projects, and is now referred to as the Lake Roosevelt Fisheries Evaluation Program. The 1998 Annual Report, Part B. Limnology, Primary Production, and <span class="hlt">Zooplankton</span> in Lake Roosevelt, Washington examined the limnology, primary production, and <span class="hlt">zooplankton</span> at eleven locations throughout the reservoir. The 1998 research protocol required a continuation of the more complete examinationmore » of limnological parameters in Lake Roosevelt that began in 1997. Phytoplankton and periphyton speciation, phytoplankton and periphyton chlorophyll a analysis, complete <span class="hlt">zooplankton</span> biomass analysis by taxonomic group, and an increased number of limnologic parameters (TDG, TDS, etc.) were examined and compared with 1997 results. Total dissolved gas levels were greatly reduced in 1998, compared with 1997, likely resulting from the relatively normal water year experienced in 1998. Mean water temperatures were similar to what was observed in past years, with a maximum of 22.7 C and a minimum of 2.6 C. Oxygen concentrations were also relatively normal, with a maximum of 16.6 mg/L, and a minimum of 0.9 mg/L. Phytoplankton in Lake Roosevelt was primarily composed of microplankton (29.6%), Cryptophyceae (21.7%), and Bacillriophyceae (17.0 %). Mean total phytoplankton chlorophyll a maximum concentration occurred in May (3.53 mg/m{sup 3}), and the minimum in January (0.39 mg/m{sup 3}). Phytoplankton chlorophyll a concentrations appear to be influenced by hydro-operations and temperature. Trophic status as indicated by phytoplankton chlorophyll a concentrations place Lake Roosevelt in the oligomesotrophic range. Periphyton colonization rates and biovolume were significantly greater at a</p> </li> <li> <p><a target="_blank" onclick="trackOutboundLink('https://www.ncbi.nlm.nih.gov/pubmed/16332820','PUBMED'); return false;" href="https://www.ncbi.nlm.nih.gov/pubmed/16332820"><span>Activity and <span class="hlt">composition</span> of the denitrifying bacterial <span class="hlt">community</span> respond differently to long-term fertilization.</span></a></p> <p><a target="_blank" href="https://www.ncbi.nlm.nih.gov/entrez/query.fcgi?DB=pubmed">PubMed</a></p> <p>Enwall, Karin; Philippot, Laurent; Hallin, Sara</p> <p>2005-12-01</p> <p>The objective of this study was to explore the long-term effects of different organic and inorganic fertilizers on activity and <span class="hlt">composition</span> of the denitrifying and total bacterial <span class="hlt">communities</span> in arable soil. Soil from the following six treatments was analyzed in an experimental field site established in 1956: cattle manure, sewage sludge, Ca(NO3)2, (NH4)2SO4, and unfertilized and unfertilized bare fallow. All plots but the fallow were planted with corn. The activity was measured in terms of potential denitrification rate and basal soil respiration. The nosZ and narG genes were used as functional markers of the denitrifying <span class="hlt">community</span>, and the <span class="hlt">composition</span> was analyzed using denaturing gradient gel electrophoresis of nosZ and restriction fragment length polymorphism of narG, together with cloning and sequencing. A fingerprint of the total bacterial <span class="hlt">community</span> was assessed by ribosomal intergenic spacer region analysis (RISA). The potential denitrification rates were higher in plots treated with organic fertilizer than in those with only mineral fertilizer. The basal soil respiration rates were positively correlated to soil carbon content, and the highest rates were found in the plots with the addition of sewage sludge. Fingerprints of the nosZ and narG genes, as well as the RISA, showed significant differences in the corresponding <span class="hlt">communities</span> in the plots treated with (NH4)2SO4 and sewage sludge, which exhibited the lowest pH. In contrast, similar patterns were observed among the other four treatments, unfertilized plots with and without crops and the plots treated with Ca(NO3)2 or with manure. This study shows that the addition of different fertilizers affects both the activity and the <span class="hlt">composition</span> of the denitrifying <span class="hlt">communities</span> in arable soil on a long-term basis. However, the treatments in which the denitrifying and bacterial <span class="hlt">community</span> <span class="hlt">composition</span> differed the most did not correspond to treatments with the most different activities, showing that potential activity</p> </li> <li> <p><a target="_blank" onclick="trackOutboundLink('https://www.ncbi.nlm.nih.gov/pubmed/25910602','PUBMED'); return false;" href="https://www.ncbi.nlm.nih.gov/pubmed/25910602"><span>Seasonal Patterns in Microbial <span class="hlt">Community</span> <span class="hlt">Composition</span> in Denitrifying Bioreactors Treating Subsurface Agricultural Drainage.</span></a></p> <p><a target="_blank" href="https://www.ncbi.nlm.nih.gov/entrez/query.fcgi?DB=pubmed">PubMed</a></p> <p>Porter, Matthew D; Andrus, J Malia; Bartolerio, Nicholas A; Rodriguez, Luis F; Zhang, Yuanhui; Zilles, Julie L; Kent, Angela D</p> <p>2015-10-01</p> <p>Denitrifying bioreactors, consisting of water flow control structures and a woodchip-filled trench, are a promising approach for removing nitrate from agricultural subsurface or tile drainage systems. To better understand the seasonal dynamics and the ecological drivers of the microbial <span class="hlt">communities</span> responsible for denitrification in these bioreactors, we employed microbial <span class="hlt">community</span> "fingerprinting" techniques in a time-series examination of three denitrifying bioreactors over 2 years, looking at bacteria, fungi, and the denitrifier functional group responsible for the final step of complete denitrification. Our analysis revealed that microbial <span class="hlt">community</span> <span class="hlt">composition</span> responds to depth and seasonal variation in moisture content and inundation of the bioreactor media, as well as temperature. Using a geostatistical analysis approach, we observed recurring temporal patterns in bacterial and denitrifying bacterial <span class="hlt">community</span> <span class="hlt">composition</span> in these bioreactors, consistent with annual cycling. The fungal <span class="hlt">communities</span> were more stable, having longer temporal autocorrelations, and did not show significant annual cycling. These results suggest a recurring seasonal cycle in the denitrifying bioreactor microbial <span class="hlt">community</span>, likely due to seasonal variation in moisture content.</p> </li> <li> <p><a target="_blank" onclick="trackOutboundLink('https://www.ncbi.nlm.nih.gov/pubmed/23761342','PUBMED'); return false;" href="https://www.ncbi.nlm.nih.gov/pubmed/23761342"><span>Physical disturbance to ecological niches created by soil structure alters <span class="hlt">community</span> <span class="hlt">composition</span> of methanotrophs.</span></a></p> <p><a target="_blank" href="https://www.ncbi.nlm.nih.gov/entrez/query.fcgi?DB=pubmed">PubMed</a></p> <p>Kumaresan, Deepak; Stralis-Pavese, Nancy; Abell, Guy C J; Bodrossy, Levente; Murrell, J Colin</p> <p>2011-10-01</p> <p>Aggregates of different sizes and stability in soil create a <span class="hlt">composite</span> of ecological niches differing in terms of physico-chemical and structural characteristics. The aim of this study was to identify, using DNA-SIP and mRNA-based microarray analysis, whether shifts in activity and <span class="hlt">community</span> <span class="hlt">composition</span> of methanotrophs occur when ecological niches created by soil structure are physically perturbed. Landfill cover soil was subject to three treatments termed: 'control' (minimal structural disruption), 'sieved' (sieved soil using 2 mm mesh) and 'ground' (grinding using mortar and pestle). 'Sieved' and 'ground' soil treatments exhibited higher methane oxidation potentials compared with the 'control' soil treatment. Analysis of the active <span class="hlt">community</span> <span class="hlt">composition</span> revealed an effect of physical disruption on active methanotrophs. Type I methanotrophs were the most active methanotrophs in 'sieved' and 'ground' soil treatments, whereas both Type I and Type II methanotrophs were active in the 'control' soil treatment. The result emphasize that changes to a particular ecological niche may not result in an immediate change to the active bacterial <span class="hlt">composition</span> and change in <span class="hlt">composition</span> will depend on the ability of the bacterial <span class="hlt">communities</span> to respond to the perturbation. © 2011 Society for Applied Microbiology and Blackwell Publishing Ltd.</p> </li> </ol> <div class="pull-right"> <ul class="pagination"> <li><a href="#" onclick='return showDiv("page_1");'>«</a></li> <li><a href="#" onclick='return showDiv("page_20");'>20</a></li> <li><a href="#" onclick='return showDiv("page_21");'>21</a></li> <li class="active"><span>22</span></li> <li><a href="#" onclick='return showDiv("page_23");'>23</a></li> <li><a href="#" onclick='return showDiv("page_24");'>24</a></li> <li><a href="#" onclick='return showDiv("page_25");'>»</a></li> </ul> </div> </div><!-- col-sm-12 --> </div><!-- row --> </div><!-- page_22 --> <div id="page_23" class="hiddenDiv"> <div class="row"> <div class="col-sm-12"> <div class="pull-right"> <ul class="pagination"> <li><a href="#" onclick='return showDiv("page_1");'>«</a></li> <li><a href="#" onclick='return showDiv("page_21");'>21</a></li> <li><a href="#" onclick='return showDiv("page_22");'>22</a></li> <li class="active"><span>23</span></li> <li><a href="#" onclick='return showDiv("page_24");'>24</a></li> <li><a href="#" onclick='return showDiv("page_25");'>25</a></li> <li><a href="#" onclick='return showDiv("page_25");'>»</a></li> </ul> </div> </div> </div> <div class="row"> <div class="col-sm-12"> <ol class="result-class" start="441"> <li> <p><a target="_blank" onclick="trackOutboundLink('https://pubs.er.usgs.gov/publication/70192532','USGSPUBS'); return false;" href="https://pubs.er.usgs.gov/publication/70192532"><span>Legacy effects of no-analogue disturbances alter plant <span class="hlt">community</span> diversity and <span class="hlt">composition</span> in semi-arid sagebrush steppe</span></a></p> <p><a target="_blank" href="http://pubs.er.usgs.gov/pubs/index.jsp?view=adv">USGS Publications Warehouse</a></p> <p>Ripplinger, Julie; Franklin, Janet; Edwards, Thomas C.</p> <p>2015-01-01</p> <p>Questions(i) What role does the type of managed disturbance play in structuring sagebrush steppe plant <span class="hlt">communities</span>? (ii) How does the <span class="hlt">composition</span> of post-disturbance plant <span class="hlt">communities</span> change with time since disturbance? (iii) Does plant <span class="hlt">community</span> diversity change over time following managed disturbance?LocationField study within the sagebrush steppe ecosystem. Rich County, Utah, USA.MethodsWe developed a chronosequence spanning up to 50 yrs post-treatment to study sagebrush steppe vegetation dynamics. Direct ordination was used to examine plant <span class="hlt">community</span> <span class="hlt">composition</span> by managed disturbance type and time since disturbance, and factorial analysis of covariance was used to examine diversity dynamics following disturbance. Indicator species values were calculated in order to identify characteristic species for each disturbance type.ResultsPlant <span class="hlt">communities</span> experienced a shift toward distinct <span class="hlt">community</span> <span class="hlt">composition</span> for each of the three managed disturbance types, and gave no indication of returning to untreated <span class="hlt">community</span> <span class="hlt">composition</span> or diversity. Small post-disturbance increases in the number of non-native grass species were observed in the treatments relative to reference, with native forb species making the largest contribution to altered <span class="hlt">composition</span>. On fire- and chemically-treated sites the proportional native forb species richness increased over time since disturbance, while the proportional contribution of non-native forbs to total species richness decreased. For all three treatment types, native grasses contributed less on average to total richness than on reference sites, while non-native grasses made up a higher proportion of total richness.ConclusionsCommon shrubland management techniques have legacy effects on the <span class="hlt">composition</span> and diversity of sagebrush steppe plant <span class="hlt">communities</span>, and no-analogue disturbances, such as chemical or mechanical treatments, have more pronounced legacy effects than treatments similar to natural disturbance regimes (fire). This study</p> </li> <li> <p><a target="_blank" onclick="trackOutboundLink('https://www.pubmedcentral.nih.gov/articlerender.fcgi?tool=pmcentrez&artid=4077760','PMC'); return false;" href="https://www.pubmedcentral.nih.gov/articlerender.fcgi?tool=pmcentrez&artid=4077760"><span>Coral Reef <span class="hlt">Community</span> <span class="hlt">Composition</span> in the Context of Disturbance History on the Great Barrier Reef, Australia</span></a></p> <p><a target="_blank" href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?DB=pmc">PubMed Central</a></p> <p>Graham, Nicholas A. J.; Chong-Seng, Karen M.; Huchery, Cindy; Januchowski-Hartley, Fraser A.; Nash, Kirsty L.</p> <p>2014-01-01</p> <p>Much research on coral reefs has documented differential declines in coral and associated organisms. In order to contextualise this general degradation, research on <span class="hlt">community</span> <span class="hlt">composition</span> is necessary in the context of varied disturbance histories and the biological processes and physical features thought to retard or promote recovery. We conducted a spatial assessment of coral reef <span class="hlt">communities</span> across five reefs of the central Great Barrier Reef, Australia, with known disturbance histories, and assessed patterns of coral cover and <span class="hlt">community</span> <span class="hlt">composition</span> related to a range of other variables thought to be important for reef dynamics. Two of the reefs had not been extensively disturbed for at least 15 years prior to the surveys. Three of the reefs had been severely impacted by crown-of-thorns starfish outbreaks and coral bleaching approximately a decade before the surveys, from which only one of them was showing signs of recovery based on independent surveys. We incorporated wave exposure (sheltered and exposed) and reef zone (slope, crest and flat) into our design, providing a comprehensive assessment of the spatial patterns in <span class="hlt">community</span> <span class="hlt">composition</span> on these reefs. Categorising corals into life history groupings, we document major coral <span class="hlt">community</span> differences in the unrecovered reefs, compared to the <span class="hlt">composition</span> and covers found on the undisturbed reefs. The recovered reef, despite having similar coral cover, had a different <span class="hlt">community</span> <span class="hlt">composition</span> from the undisturbed reefs, which may indicate slow successional processes, or a different natural <span class="hlt">community</span> dominance pattern due to hydrology and other oceanographic factors. The variables that best correlated with patterns in the coral <span class="hlt">community</span> among sites included the density of juvenile corals, herbivore fish biomass, fish species richness and the cover of macroalgae. Given increasing impacts to the Great Barrier Reef, efforts to mitigate local stressors will be imperative to encouraging coral <span class="hlt">communities</span> to persist into</p> </li> <li> <p><a target="_blank" onclick="trackOutboundLink('https://cfpub.epa.gov/si/si_public_record_report.cfm?dirEntryId=61267&keyword=copepod&actType=&TIMSType=+&TIMSSubTypeID=&DEID=&epaNumber=&ntisID=&archiveStatus=Both&ombCat=Any&dateBeginCreated=&dateEndCreated=&dateBeginPublishedPresented=&dateEndPublishedPresented=&dateBeginUpdated=&dateEndUpdated=&dateBeginCompleted=&dateEndCompleted=&personID=&role=Any&journalID=&publisherID=&sortBy=revisionDate&count=50','EPA-EIMS'); return false;" href="https://cfpub.epa.gov/si/si_public_record_report.cfm?dirEntryId=61267&keyword=copepod&actType=&TIMSType=+&TIMSSubTypeID=&DEID=&epaNumber=&ntisID=&archiveStatus=Both&ombCat=Any&dateBeginCreated=&dateEndCreated=&dateBeginPublishedPresented=&dateEndPublishedPresented=&dateBeginUpdated=&dateEndUpdated=&dateBeginCompleted=&dateEndCompleted=&personID=&role=Any&journalID=&publisherID=&sortBy=revisionDate&count=50"><span>SIMULATING TEMPORAL VARIATIONS IN NUTRIENT, PHYTOPLANKTON, AND <span class="hlt">ZOOPLANKTON</span> ON THE INNER OREGON SHELF</span></a></p> <p><a target="_blank" href="http://oaspub.epa.gov/eims/query.page">EPA Science Inventory</a></p> <p></p> <p></p> <p>The objective of this study is to use a numerical model to examine the linkages between physical processes and temporal variability in the plankton dynamics in a coastal upwelling system. We used a nutrient-phytoplankton-<span class="hlt">zooplankton</span> model coupled to a two-dimensional circulation...</p> </li> <li> <p><a target="_blank" onclick="trackOutboundLink('https://www.pubmedcentral.nih.gov/articlerender.fcgi?tool=pmcentrez&artid=5110519','PMC'); return false;" href="https://www.pubmedcentral.nih.gov/articlerender.fcgi?tool=pmcentrez&artid=5110519"><span>Impacts of Fertilization Regimes on Arbuscular Mycorrhizal Fungal (AMF) <span class="hlt">Community</span> <span class="hlt">Composition</span> Were Correlated with Organic Matter <span class="hlt">Composition</span> in Maize Rhizosphere Soil</span></a></p> <p><a target="_blank" href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?DB=pmc">PubMed Central</a></p> <p>Zhu, Chen; Ling, Ning; Guo, Junjie; Wang, Min; Guo, Shiwei; Shen, Qirong</p> <p>2016-01-01</p> <p>The understanding of the response of arbuscular mycorrhizal fungi (AMF) <span class="hlt">community</span> <span class="hlt">composition</span> to fertilization is of great significance in sustainable agriculture. However, how fertilization influences AMF diversity and <span class="hlt">composition</span> is not well-established yet. A field experiment located in northeast China in typical black soil (Chernozem) was conducted and high-throughput sequencing approach was used to investigate the effects of different fertilizations on the variation of AMF <span class="hlt">community</span> in the rhizosphere soil of maize crop. The results showed that AMF diversity in the maize rhizosphere was significantly altered by different fertilization regimes. As revealed by redundancy analysis, the application of organic manure was the most important factor impacting AMF <span class="hlt">community</span> <span class="hlt">composition</span> between samples with and without organic manure, followed by N fertilizer and P fertilizer inputs. Moreover, the organic matter <span class="hlt">composition</span> in the rhizosphere, determined by GC–MS, was significantly altered by the organic manure amendment. Many of the chemical components displayed significant relationships with the AMF <span class="hlt">community</span> <span class="hlt">composition</span> according to the Mantel test, among those, 2-ethylnaphthalene explained the highest percentage (54.2%) of the variation. The relative contents of 2-ethylnaphthalene and 2, 6, 10-trimethyltetradecane had a negative correlation with Glomus relative abundance, while the relative content of 3-methylbiphenyl displayed a positive correlation with Rhizophagus. The co-occurrence patterns in treatments with and without organic manure amendment were analyzed, and more hubs were detected in the network of soils with organic manure amendment. Additionally, three operational taxonomic units (OTUs) belonging to Glomerales were identified as hubs in all treatments, indicating these OTUs likely occupied broad ecological niches and were always active for mediating AMF species interaction in the maize rhizosphere. Taken together, impacts of fertilization regimes on</p> </li> <li> <p><a target="_blank" onclick="trackOutboundLink('https://www.ncbi.nlm.nih.gov/pubmed/27394636','PUBMED'); return false;" href="https://www.ncbi.nlm.nih.gov/pubmed/27394636"><span>Distribution of trace metals in surface seawater and <span class="hlt">zooplankton</span> of the Bay of Bengal, off Rushikulya estuary, East Coast of India.</span></a></p> <p><a target="_blank" href="https://www.ncbi.nlm.nih.gov/entrez/query.fcgi?DB=pubmed">PubMed</a></p> <p>Srichandan, Suchismita; Panigrahy, R C; Baliarsingh, S K; Rao B, Srinivasa; Pati, Premalata; Sahu, Biraja K; Sahu, K C</p> <p>2016-10-15</p> <p>Concentrations of trace metals such as iron (Fe), copper (Cu), zinc (Zn), cobalt (Co), nickel (Ni), manganese (Mn), lead (Pb), cadmium (Cd), chromium (Cr), arsenic (As), vanadium (V), and selenium (Se) were determined in seawater and <span class="hlt">zooplankton</span> from the surface waters off Rushikulya estuary, north-western Bay of Bengal. During the study period, the concentration of trace metals in seawater and <span class="hlt">zooplankton</span> showed significant spatio-temporal variation. Cu and Co levels in seawater mostly remained non-detectable. Other elements were found at higher concentrations and exhibited marked variations. The rank order distribution of trace metals in terms of their average concentration in seawater was observed as Fe>Ni>Mn>Pb>As>Zn>Cr>V>Se>Cd while in <span class="hlt">zooplankton</span> it was Fe>Mn>Cd>As>Pb>Ni>Cr>Zn>V>Se. The bioaccumulation factor (BAF) of Fe was highest followed by Zn and the lowest value was observed with Ni. Results of correlation analysis discerned positive affinity and good relationship among the majority of the trace metals, both in seawater and <span class="hlt">zooplankton</span> suggesting their strong affinity and coexistence. Copyright © 2016 Elsevier Ltd. All rights reserved.</p> </li> <li> <p><a target="_blank" onclick="trackOutboundLink('https://cfpub.epa.gov/si/si_public_record_report.cfm?dirEntryId=310978&Lab=NHEERL&keyword=Johnson&actType=&TIMSType=+&TIMSSubTypeID=&DEID=&epaNumber=&ntisID=&archiveStatus=Both&ombCat=Any&dateBeginCreated=&dateEndCreated=&dateBeginPublishedPresented=&dateEndPublishedPresented=&dateBeginUpdated=&dateEndUpdated=&dateBeginCompleted=&dateEndCompleted=&personID=&role=Any&journalID=&publisherID=&sortBy=revisionDate&count=50','EPA-EIMS'); return false;" href="https://cfpub.epa.gov/si/si_public_record_report.cfm?dirEntryId=310978&Lab=NHEERL&keyword=Johnson&actType=&TIMSType=+&TIMSSubTypeID=&DEID=&epaNumber=&ntisID=&archiveStatus=Both&ombCat=Any&dateBeginCreated=&dateEndCreated=&dateBeginPublishedPresented=&dateEndPublishedPresented=&dateBeginUpdated=&dateEndUpdated=&dateBeginCompleted=&dateEndCompleted=&personID=&role=Any&journalID=&publisherID=&sortBy=revisionDate&count=50"><span>Effects of biochar blends on microbial <span class="hlt">community</span> <span class="hlt">composition</span> in two coastal plain soils</span></a></p> <p><a target="_blank" href="http://oaspub.epa.gov/eims/query.page">EPA Science Inventory</a></p> <p></p> <p></p> <p>The amendment of soil with biochar has been demonstrated to have an effect not only on the soil physicochemical properties, but also on soil microbial <span class="hlt">community</span> <span class="hlt">composition</span> and activity. Previous reports have demonstrated significant impacts on soil microbial <span class="hlt">community</span> structure....</p> </li> <li> <p><a target="_blank" onclick="trackOutboundLink('https://www.ncbi.nlm.nih.gov/pubmed/25187481','PUBMED'); return false;" href="https://www.ncbi.nlm.nih.gov/pubmed/25187481"><span>Anthropogenic land use shapes the <span class="hlt">composition</span> and phylogenetic structure of soil arbuscular mycorrhizal fungal <span class="hlt">communities</span>.</span></a></p> <p><a target="_blank" href="https://www.ncbi.nlm.nih.gov/entrez/query.fcgi?DB=pubmed">PubMed</a></p> <p>Moora, Mari; Davison, John; Öpik, Maarja; Metsis, Madis; Saks, Ülle; Jairus, Teele; Vasar, Martti; Zobel, Martin</p> <p>2014-12-01</p> <p>Arbuscular mycorrhizal (AM) fungi play an important role in ecosystems, but little is known about how soil AM fungal <span class="hlt">community</span> <span class="hlt">composition</span> varies in relation to habitat type and land-use intensity. We molecularly characterized AM fungal <span class="hlt">communities</span> in soil samples (n = 88) from structurally open (permanent grassland, intensive and sustainable agriculture) and forested habitats (primeval forest and spruce plantation). The habitats harboured significantly different AM fungal <span class="hlt">communities</span>, and there was a broad difference in fungal <span class="hlt">community</span> <span class="hlt">composition</span> between forested and open habitats, the latter being characterized by higher average AM fungal richness. Within both open and forest habitats, intensive land use significantly influenced <span class="hlt">community</span> <span class="hlt">composition</span>. There was a broad difference in the phylogenetic structure of AM fungal <span class="hlt">communities</span> between mechanically disturbed and nondisturbed habitats. Taxa from Glomeraceae served as indicator species for the nondisturbed habitats, while taxa from Archaeosporaceae, Claroideoglomeraceae and Diversisporaceae were indicators for the disturbed habitats. The distribution of these indicator taxa among habitat types in the MaarjAM global database of AM fungal diversity was in accordance with their local indicator status. © 2014 Federation of European Microbiological Societies. Published by John Wiley & Sons Ltd. All rights reserved.</p> </li> <li> <p><a target="_blank" onclick="trackOutboundLink('http://adsabs.harvard.edu/abs/2016NatSR...635039A','NASAADS'); return false;" href="http://adsabs.harvard.edu/abs/2016NatSR...635039A"><span>Chytrid parasitism facilitates trophic transfer between bloom-forming cyanobacteria and <span class="hlt">zooplankton</span> (Daphnia)</span></a></p> <p><a target="_blank" href="http://adsabs.harvard.edu/abstract_service.html">NASA Astrophysics Data System (ADS)</a></p> <p>Agha, Ramsy; Saebelfeld, Manja; Manthey, Christin; Rohrlack, Thomas; Wolinska, Justyna</p> <p>2016-10-01</p> <p>Parasites are rarely included in food web studies, although they can strongly alter trophic interactions. In aquatic ecosystems, poorly grazed cyanobacteria often dominate phytoplankton <span class="hlt">communities</span>, leading to the decoupling of primary and secondary production. Here, we addressed the interface between predator-prey and host-parasite interactions by conducting a life-table experiment, in which four Daphnia galeata genotypes were maintained on quantitatively comparable diets consisting of healthy cyanobacteria or cyanobacteria infected by a fungal (chytrid) parasite. In four out of five fitness parameters, at least one Daphnia genotype performed better on parasitised cyanobacteria than in the absence of infection. Further treatments consisting of purified chytrid zoospores and heterotrophic bacteria suspensions established the causes of improved fitness. First, Daphnia feed on chytrid zoospores which trophically upgrade cyanobacterial carbon. Second, an increase in heterotrophic bacterial biomass, promoted by cyanobacterial decay, provides an additional food source for Daphnia. In addition, chytrid infection induces fragmentation of cyanobacterial filaments, which could render cyanobacteria more edible. Our results demonstrate that chytrid parasitism can sustain <span class="hlt">zooplankton</span> under cyanobacterial bloom conditions, and exemplify the potential of parasites to alter interactions between trophic levels.</p> </li> <li> <p><a target="_blank" onclick="trackOutboundLink('https://www.pubmedcentral.nih.gov/articlerender.fcgi?tool=pmcentrez&artid=3937345','PMC'); return false;" href="https://www.pubmedcentral.nih.gov/articlerender.fcgi?tool=pmcentrez&artid=3937345"><span>Functional Tradeoffs Underpin Salinity-Driven Divergence in Microbial <span class="hlt">Community</span> <span class="hlt">Composition</span></span></a></p> <p><a target="_blank" href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?DB=pmc">PubMed Central</a></p> <p>Yooseph, Shibu; Ininbergs, Karolina; Goll, Johannes; Asplund-Samuelsson, Johannes; McCrow, John P.; Celepli, Narin; Allen, Lisa Zeigler; Ekman, Martin; Lucas, Andrew J.; Hagström, Åke; Thiagarajan, Mathangi; Brindefalk, Björn; Richter, Alexander R.; Andersson, Anders F.; Tenney, Aaron; Lundin, Daniel; Tovchigrechko, Andrey; Nylander, Johan A. A.; Brami, Daniel; Badger, Jonathan H.; Allen, Andrew E.; Rusch, Douglas B.; Hoffman, Jeff; Norrby, Erling; Friedman, Robert; Pinhassi, Jarone; Venter, J. Craig; Bergman, Birgitta</p> <p>2014-01-01</p> <p>Bacterial <span class="hlt">community</span> <span class="hlt">composition</span> and functional potential change subtly across gradients in the surface ocean. In contrast, while there are significant phylogenetic divergences between <span class="hlt">communities</span> from freshwater and marine habitats, the underlying mechanisms to this phylogenetic structuring yet remain unknown. We hypothesized that the functional potential of natural bacterial <span class="hlt">communities</span> is linked to this striking divide between microbiomes. To test this hypothesis, metagenomic sequencing of microbial <span class="hlt">communities</span> along a 1,800 km transect in the Baltic Sea area, encompassing a continuous natural salinity gradient from limnic to fully marine conditions, was explored. Multivariate statistical analyses showed that salinity is the main determinant of dramatic changes in microbial <span class="hlt">community</span> <span class="hlt">composition</span>, but also of large scale changes in core metabolic functions of bacteria. Strikingly, genetically and metabolically different pathways for key metabolic processes, such as respiration, biosynthesis of quinones and isoprenoids, glycolysis and osmolyte transport, were differentially abundant at high and low salinities. These shifts in functional capacities were observed at multiple taxonomic levels and within dominant bacterial phyla, while bacteria, such as SAR11, were able to adapt to the entire salinity gradient. We propose that the large differences in central metabolism required at high and low salinities dictate the striking divide between freshwater and marine microbiomes, and that the ability to inhabit different salinity regimes evolved early during bacterial phylogenetic differentiation. These findings significantly advance our understanding of microbial distributions and stress the need to incorporate salinity in future climate change models that predict increased levels of precipitation and a reduction in salinity. PMID:24586863</p> </li> <li> <p><a target="_blank" onclick="trackOutboundLink('https://www.ncbi.nlm.nih.gov/pubmed/24586863','PUBMED'); return false;" href="https://www.ncbi.nlm.nih.gov/pubmed/24586863"><span>Functional tradeoffs underpin salinity-driven divergence in microbial <span class="hlt">community</span> <span class="hlt">composition</span>.</span></a></p> <p><a target="_blank" href="https://www.ncbi.nlm.nih.gov/entrez/query.fcgi?DB=pubmed">PubMed</a></p> <p>Dupont, Chris L; Larsson, John; Yooseph, Shibu; Ininbergs, Karolina; Goll, Johannes; Asplund-Samuelsson, Johannes; McCrow, John P; Celepli, Narin; Allen, Lisa Zeigler; Ekman, Martin; Lucas, Andrew J; Hagström, Åke; Thiagarajan, Mathangi; Brindefalk, Björn; Richter, Alexander R; Andersson, Anders F; Tenney, Aaron; Lundin, Daniel; Tovchigrechko, Andrey; Nylander, Johan A A; Brami, Daniel; Badger, Jonathan H; Allen, Andrew E; Rusch, Douglas B; Hoffman, Jeff; Norrby, Erling; Friedman, Robert; Pinhassi, Jarone; Venter, J Craig; Bergman, Birgitta</p> <p>2014-01-01</p> <p>Bacterial <span class="hlt">community</span> <span class="hlt">composition</span> and functional potential change subtly across gradients in the surface ocean. In contrast, while there are significant phylogenetic divergences between <span class="hlt">communities</span> from freshwater and marine habitats, the underlying mechanisms to this phylogenetic structuring yet remain unknown. We hypothesized that the functional potential of natural bacterial <span class="hlt">communities</span> is linked to this striking divide between microbiomes. To test this hypothesis, metagenomic sequencing of microbial <span class="hlt">communities</span> along a 1,800 km transect in the Baltic Sea area, encompassing a continuous natural salinity gradient from limnic to fully marine conditions, was explored. Multivariate statistical analyses showed that salinity is the main determinant of dramatic changes in microbial <span class="hlt">community</span> <span class="hlt">composition</span>, but also of large scale changes in core metabolic functions of bacteria. Strikingly, genetically and metabolically different pathways for key metabolic processes, such as respiration, biosynthesis of quinones and isoprenoids, glycolysis and osmolyte transport, were differentially abundant at high and low salinities. These shifts in functional capacities were observed at multiple taxonomic levels and within dominant bacterial phyla, while bacteria, such as SAR11, were able to adapt to the entire salinity gradient. We propose that the large differences in central metabolism required at high and low salinities dictate the striking divide between freshwater and marine microbiomes, and that the ability to inhabit different salinity regimes evolved early during bacterial phylogenetic differentiation. These findings significantly advance our understanding of microbial distributions and stress the need to incorporate salinity in future climate change models that predict increased levels of precipitation and a reduction in salinity.</p> </li> <li> <p><a target="_blank" onclick="trackOutboundLink('https://cfpub.epa.gov/si/si_public_record_report.cfm?dirEntryId=105034&keyword=bacterial+AND+growth&actType=&TIMSType=+&TIMSSubTypeID=&DEID=&epaNumber=&ntisID=&archiveStatus=Both&ombCat=Any&dateBeginCreated=&dateEndCreated=&dateBeginPublishedPresented=&dateEndPublishedPresented=&dateBeginUpdated=&dateEndUpdated=&dateBeginCompleted=&dateEndCompleted=&personID=&role=Any&journalID=&publisherID=&sortBy=revisionDate&count=50','EPA-EIMS'); return false;" href="https://cfpub.epa.gov/si/si_public_record_report.cfm?dirEntryId=105034&keyword=bacterial+AND+growth&actType=&TIMSType=+&TIMSSubTypeID=&DEID=&epaNumber=&ntisID=&archiveStatus=Both&ombCat=Any&dateBeginCreated=&dateEndCreated=&dateBeginPublishedPresented=&dateEndPublishedPresented=&dateBeginUpdated=&dateEndUpdated=&dateBeginCompleted=&dateEndCompleted=&personID=&role=Any&journalID=&publisherID=&sortBy=revisionDate&count=50"><span>Seasonal <span class="hlt">composition</span> and activity of sulfate-reducing prokaryotic <span class="hlt">communities</span> in seagrass bed sediments</span></a></p> <p><a target="_blank" href="http://oaspub.epa.gov/eims/query.page">EPA Science Inventory</a></p> <p></p> <p></p> <p>Sulfate-reducing prokaryotes (SRP) play a key role in the carbon and nutrient cycles of coastal marine, vegetated ecosystems, but the interactions of SRP <span class="hlt">communities</span> with aquatic plants remain little studied. The abundance, activity, and <span class="hlt">community</span> <span class="hlt">composition</span> of SRP was studied i...</p> </li> <li> <p><a target="_blank" onclick="trackOutboundLink('http://adsabs.harvard.edu/abs/2007AGUSMOS23B..16M','NASAADS'); return false;" href="http://adsabs.harvard.edu/abs/2007AGUSMOS23B..16M"><span><span class="hlt">Zooplankton</span> Structure of the La Paz Bay southern Gulf of California and their Relation with the Hydrography during the summer 2004</span></a></p> <p><a target="_blank" href="http://adsabs.harvard.edu/abstract_service.html">NASA Astrophysics Data System (ADS)</a></p> <p>Mojica-Ramirez, E.; Monreal-Gomez, M. A.; Salas-de-Leon, D. A.</p> <p>2007-05-01</p> <p>Physical and biological data were gathered in Bay of La Paz, Southern Gulf of California, in summer, 2004. These include hydrographical data, ADP currents, backscattering signals, in vivo natural fluorescence, as well as, <span class="hlt">zooplankton</span> samples. The topography of the 15°C shows a dome in the central part of the bay that becomes deeper towards the periphery suggesting the existence of a cyclonic eddy. The 35 salinity topography shows an uplift of 35 m. The eddy has a north-south diameter of approximately 35 km and cover almost all the bay. The <span class="hlt">zooplankton</span> samples reveal the existence of 23 groups the most abundant were cladocera, copepods, siphonophores, chaetognaths and larvae of crustaceans. The <span class="hlt">zooplankton</span> biomass presents higher values in the periphery of the eddy indicating an influence of the cyclonic circulation in their distribution.</p> </li> <li> <p><a target="_blank" onclick="trackOutboundLink('https://www.ncbi.nlm.nih.gov/pubmed/21796217','PUBMED'); return false;" href="https://www.ncbi.nlm.nih.gov/pubmed/21796217"><span>The phylogenetic <span class="hlt">composition</span> and structure of soil microbial <span class="hlt">communities</span> shifts in response to elevated carbon dioxide.</span></a></p> <p><a target="_blank" href="https://www.ncbi.nlm.nih.gov/entrez/query.fcgi?DB=pubmed">PubMed</a></p> <p>He, Zhili; Piceno, Yvette; Deng, Ye; Xu, Meiying; Lu, Zhenmei; Desantis, Todd; Andersen, Gary; Hobbie, Sarah E; Reich, Peter B; Zhou, Jizhong</p> <p>2012-02-01</p> <p>One of the major factors associated with global change is the ever-increasing concentration of atmospheric CO(2). Although the stimulating effects of elevated CO(2) (eCO(2)) on plant growth and primary productivity have been established, its impacts on the diversity and function of soil microbial <span class="hlt">communities</span> are poorly understood. In this study, phylogenetic microarrays (PhyloChip) were used to comprehensively survey the richness, <span class="hlt">composition</span> and structure of soil microbial <span class="hlt">communities</span> in a grassland experiment subjected to two CO(2) conditions (ambient, 368 p.p.m., versus elevated, 560 p.p.m.) for 10 years. The richness based on the detected number of operational taxonomic units (OTUs) significantly decreased under eCO(2). PhyloChip detected 2269 OTUs derived from 45 phyla (including two from Archaea), 55 classes, 99 orders, 164 families and 190 subfamilies. Also, the signal intensity of five phyla (Crenarchaeota, Chloroflexi, OP10, OP9/JS1, Verrucomicrobia) significantly decreased at eCO(2), and such significant effects of eCO(2) on microbial <span class="hlt">composition</span> were also observed at the class or lower taxonomic levels for most abundant phyla, such as Proteobacteria, Firmicutes, Actinobacteria, Bacteroidetes and Acidobacteria, suggesting a shift in microbial <span class="hlt">community</span> <span class="hlt">composition</span> at eCO(2). Additionally, statistical analyses showed that the overall taxonomic structure of soil microbial <span class="hlt">communities</span> was altered at eCO(2). Mantel tests indicated that such changes in species richness, <span class="hlt">composition</span> and structure of soil microbial <span class="hlt">communities</span> were closely correlated with soil and plant properties. This study provides insights into our understanding of shifts in the richness, <span class="hlt">composition</span> and structure of soil microbial <span class="hlt">communities</span> under eCO(2) and environmental factors shaping the microbial <span class="hlt">community</span> structure.</p> </li> <li> <p><a target="_blank" onclick="trackOutboundLink('https://www.ncbi.nlm.nih.gov/pubmed/19263883','PUBMED'); return false;" href="https://www.ncbi.nlm.nih.gov/pubmed/19263883"><span>Recovery after local extinction: factors affecting re-establishment of alpine lake <span class="hlt">zooplankton</span>.</span></a></p> <p><a target="_blank" href="https://www.ncbi.nlm.nih.gov/entrez/query.fcgi?DB=pubmed">PubMed</a></p> <p>Knapp, Roland A; Sarnelle, Orlando</p> <p>2008-12-01</p> <p>The introduction of fishes into naturally fishless mountain lakes often results in the extirpation of large-bodied <span class="hlt">zooplankton</span> species. The ability to predict whether or not particular species will recover following fish removal is critically important for the design and implementation of lake restoration efforts but is currently not possible because of a lack of information on what factors affect recovery. The objective of this study was to identify the factors influencing recovery probability in two large-bodied <span class="hlt">zooplankton</span> species following fish removal. We predicted that (1) Daphnia melanica would have a higher probability of recovery than Hesperodiaptomus shoshone due to differences in reproductive mode (D. melanica is parthenogenetic, H. shoshone is obligately sexual), (2) recovery probability would be a decreasing function of fish residence time due to the negative relationship between fish residence time and size of the egg bank, and (3) recovery probability would be an increasing function of lake depth as a consequence of a positive relationship between lake depth and egg bank size. To test these predictions, we sampled contemporary <span class="hlt">zooplankton</span> populations and collected paleolimnological data from 44 naturally fishless lakes that were stocked with trout for varying lengths of time before reverting to a fishless condition. D. melanica had a significantly higher probability of recovery than did H. shoshone (0.82 vs. 0.54, respectively). The probability of recovery for H. shoshone was also significantly influenced by lake depth, fish residence time, and elevation, but only elevation influenced the probability of recovery in D. melanica. These results are consistent with between-species differences in reproductive mode combined with the much greater longevity of diapausing eggs in D. melanica than in H. shoshone. Our data also suggest that H. shoshone will often fail to recover in lakes with fish residence times exceeding 50 years.</p> </li> <li> <p><a target="_blank" onclick="trackOutboundLink('https://www.ncbi.nlm.nih.gov/pubmed/16598004','PUBMED'); return false;" href="https://www.ncbi.nlm.nih.gov/pubmed/16598004"><span>Succession and regulation factors of small eukaryote <span class="hlt">community</span> <span class="hlt">composition</span> in a lacustrine ecosystem (Lake Pavin).</span></a></p> <p><a target="_blank" href="https://www.ncbi.nlm.nih.gov/entrez/query.fcgi?DB=pubmed">PubMed</a></p> <p>Lepère, Cécile; Boucher, Delphine; Jardillier, Ludwig; Domaizon, Isabelle; Debroas, Didier</p> <p>2006-04-01</p> <p>The structure and dynamics of small eukaryotes (cells with a diameter less than 5 microm) were studied over two consecutive years in an oligomesotrophic lake (Lake Pavin in France). Water samples were collected at 5 and 30 m below the surface; when the lake was stratified, these depths corresponded to the epilimnion and hypolimnion. Changes in small-eukaryote structure were analyzed using terminal restriction fragment length polymorphism (T-RFLP) and cloning and sequencing of the 18S rRNA genes. Terminal restriction fragments from clones were used to reveal the dominant taxa in T-RFLP profiles of the environmental samples. Spumella-like cells (Chrysophyceae) did not dominate the small eukaryote <span class="hlt">community</span> identified by molecular techniques in lacustrine ecosystems. Small eukaryotes appeared to be dominated by heterotrophic cells, particularly Cercozoa, which represented nearly half of the identified phylotypes, followed by the Fungi-LKM11 group (25%), choanoflagellates (10.3%) and Chrysophyceae (8.9%). Bicosoecida, Cryptophyta, and ciliates represented less than 9% of the <span class="hlt">community</span> studied. No seasonal reproducibility in temporal evolution of the small-eukaryote <span class="hlt">community</span> was observed from 1 year to the next. The T-RFLP patterns were related to bottom-up (resources) and top-down (grazing) variables using canonical correspondence analysis. The results showed a strong top-down regulation of small eukaryotes by <span class="hlt">zooplankton</span>, more exactly, by cladocerans at 5 m and copepods at 30 m. Among bottom-up factors, temperature had a significant effect at both depths. The concentrations of nitrogenous nutrients and total phosphorus also had an effect on small-eukaryote dynamics at 5 m, whereas bacterial abundance and dissolved oxygen played a more important structuring role in the deeper zone.</p> </li> <li> <p><a target="_blank" onclick="trackOutboundLink('https://www.ncbi.nlm.nih.gov/pubmed/28584706','PUBMED'); return false;" href="https://www.ncbi.nlm.nih.gov/pubmed/28584706"><span>Impact of enzymatic digestion on bacterial <span class="hlt">community</span> <span class="hlt">composition</span> in CF airway samples.</span></a></p> <p><a target="_blank" href="https://www.ncbi.nlm.nih.gov/entrez/query.fcgi?DB=pubmed">PubMed</a></p> <p>Williamson, Kayla M; Wagner, Brandie D; Robertson, Charles E; Johnson, Emily J; Zemanick, Edith T; Harris, J Kirk</p> <p>2017-01-01</p> <p>Previous studies have demonstrated the importance of DNA extraction methods for molecular detection of Staphylococcus, an important bacterial group in cystic fibrosis (CF). We sought to evaluate the effect of enzymatic digestion (EnzD) prior to DNA extraction on bacterial <span class="hlt">communities</span> identified in sputum and oropharyngeal swab (OP) samples from patients with CF. DNA from 81 samples (39 sputum and 42 OP) collected from 63 patients with CF was extracted in duplicate with and without EnzD. Bacterial <span class="hlt">communities</span> were determined by rRNA gene sequencing, and measures of alpha and beta diversity were calculated. Principal Coordinate Analysis (PCoA) was used to assess differences at the <span class="hlt">community</span> level and Wilcoxon Signed Rank tests were used to compare relative abundance (RA) of individual genera for paired samples with and without EnzD. Shannon Diversity Index (alpha-diversity) decreased in sputum and OP samples with the use of EnzD. Larger shifts in <span class="hlt">community</span> <span class="hlt">composition</span> were observed for OP samples (beta-diversity, measured by Morisita-Horn), whereas less change in <span class="hlt">communities</span> was observed for sputum samples. The use of EnzD with OP swabs resulted in significant increase in RA for the genera Gemella ( p  < 0.01), Streptococcus ( p  < 0.01), and Rothia ( p  < 0.01). Staphylococcus ( p  < 0.01) was the only genus with a significant increase in RA from sputum, whereas the following genera decreased in RA with EnzD: Veillonella ( p  < 0.01), Granulicatella ( p  < 0.01), Prevotella ( p  < 0.01), and Gemella ( p  = 0.02). In OP samples, higher RA of Gram-positive taxa was associated with larger changes in microbial <span class="hlt">community</span> <span class="hlt">composition</span>. We show that the application of EnzD to CF airway samples, particularly OP swabs, results in differences in microbial <span class="hlt">communities</span> detected by sequencing. Use of EnzD can result in large changes in bacterial <span class="hlt">community</span> <span class="hlt">composition</span>, and is particularly useful for detection of Staphylococcus in CF OP samples. The enhanced</p> </li> <li> <p><a target="_blank" onclick="trackOutboundLink('https://www.ncbi.nlm.nih.gov/pubmed/28667638','PUBMED'); return false;" href="https://www.ncbi.nlm.nih.gov/pubmed/28667638"><span>Organic carbon and nitrogen availability determine bacterial <span class="hlt">community</span> <span class="hlt">composition</span> in paddy fields of the Indo-Gangetic plain.</span></a></p> <p><a target="_blank" href="https://www.ncbi.nlm.nih.gov/entrez/query.fcgi?DB=pubmed">PubMed</a></p> <p>Kumar, Arvind; Rai, Lal Chand</p> <p>2017-07-01</p> <p>Soil quality is an important factor and maintained by inhabited microorganisms. Soil physicochemical characteristics determine indigenous microbial population and rice provides food security to major population of the world. Therefore, this study aimed to assess the impact of physicochemical variables on bacterial <span class="hlt">community</span> <span class="hlt">composition</span> and diversity in conventional paddy fields which could reflect a real picture of the bacterial <span class="hlt">communities</span> operating in the paddy agro-ecosystem. To fulfill the objective; soil physicochemical characterization, bacterial <span class="hlt">community</span> <span class="hlt">composition</span> and diversity analysis was carried out using culture-independent PCR-DGGE method from twenty soils distributed across eight districts. Bacterial <span class="hlt">communities</span> were grouped into three clusters based on UPGMA cluster analysis of DGGE banding pattern. The linkage of measured physicochemical variables with bacterial <span class="hlt">community</span> <span class="hlt">composition</span> was analyzed by canonical correspondence analysis (CCA). CCA ordination biplot results were similar to UPGMA cluster analysis. High levels of species-environment correlations (0.989 and 0.959) were observed and the largest proportion of species data variability was explained by total organic carbon (TOC), available nitrogen, total nitrogen and pH. Thus, results suggest that TOC and nitrogen are key regulators of bacterial <span class="hlt">community</span> <span class="hlt">composition</span> in the conventional paddy fields. Further, high diversity indices and evenness values demonstrated heterogeneity and co-abundance of the bacterial <span class="hlt">communities</span>.</p> </li> <li> <p><a target="_blank" onclick="trackOutboundLink('https://www.ncbi.nlm.nih.gov/pubmed/29542226','PUBMED'); return false;" href="https://www.ncbi.nlm.nih.gov/pubmed/29542226"><span>Vertical distribution and <span class="hlt">community</span> <span class="hlt">composition</span> of anammox bacteria in sediments of a eutrophic shallow lake.</span></a></p> <p><a target="_blank" href="https://www.ncbi.nlm.nih.gov/entrez/query.fcgi?DB=pubmed">PubMed</a></p> <p>Qin, H; Han, C; Jin, Z; Wu, L; Deng, H; Zhu, G; Zhong, W</p> <p>2018-07-01</p> <p>The aim of this study was to explore the vertical distribution traits of anaerobic ammonium-oxidizing (anammox) bacterial relative abundance and <span class="hlt">community</span> <span class="hlt">composition</span> along the oxic/anoxic sediment profiles in a shallow lake. The Illumina Miseq-based sequencing and quantitative polymerase chain reactions were utilized to analyse relative abundance of anammox hydrazine synthase (hzsB) gene in comparison with bacterial 16S rRNA genes, anammox bacterial relative abundance (the number of anammox sequences divided by total number of sequences), <span class="hlt">community</span> <span class="hlt">composition</span> and diversity in sediments. The relative abundance of hzsB gene at the low-nitrogen (LN) site in the lake sediments showed that the vertical distribution of anammox bacteria increased to a peak, then decreased with increasing depth. Moreover, the relative abundance of hzsB gene at the high-nitrogen site was significantly lower than that at the LN site. Additionally, the <span class="hlt">community</span> <span class="hlt">composition</span> results showed that Candidatus Brocadia sp. was the dominant genus. In addition, the anammox bacterial diversity was also site specific. Redundancy analysis showed that the total N and the NH 4 + -N content might be the most important factors affecting anammox bacterial <span class="hlt">community</span> <span class="hlt">composition</span> in the studied sites. The results revealed the specific vertical variance of anammox bacterial distribution and <span class="hlt">community</span> <span class="hlt">composition</span> in oxic/anoxic sediments of a eutrophic shallow lake. This is the first study to demonstrate that anammox bacteria displayed the particular distribution in freshwater sediments, which implied a strong response to the anthropogenic eutrophication. © 2018 The Society for Applied Microbiology.</p> </li> <li> <p><a target="_blank" onclick="trackOutboundLink('https://pubs.er.usgs.gov/publication/70035520','USGSPUBS'); return false;" href="https://pubs.er.usgs.gov/publication/70035520"><span>Impact of biological soil crusts and desert plants on soil microfaunal <span class="hlt">community</span> <span class="hlt">composition</span></span></a></p> <p><a target="_blank" href="http://pubs.er.usgs.gov/pubs/index.jsp?view=adv">USGS Publications Warehouse</a></p> <p>Darby, B.J.; Neher, D.A.; Belnap, J.</p> <p>2010-01-01</p> <p>Carbon and nitrogen are supplied by a variety of sources in the desert food web; both vascular and non-vascular plants and cyanobacteria supply carbon, and cyanobacteria and plant-associated rhizosphere bacteria are sources of biological nitrogen fixation. The objective of this study was to compare the relative influence of vascular plants and biological soil crusts on desert soil nematode and protozoan abundance and <span class="hlt">community</span> <span class="hlt">composition</span>. In the first experiment, biological soil crusts were removed by physical trampling. Treatments with crust removed had fewer nematodes and a greater relative ratio of bacterivores to microphytophages than treatments with intact crust. However, protozoa <span class="hlt">composition</span> was similar with or without the presence of crusts. In a second experiment, nematode <span class="hlt">community</span> <span class="hlt">composition</span> was characterized along a spatial gradient away from stems of grasses or shrubs. Although nematodes generally occurred in increasing abundance nearer to plant stems, some genera (such as the enrichment-type Panagrolaimus) increased disproportionately more than others (such as the stress-tolerant Acromoldavicus). We propose that the impact of biological soil crusts and desert plants on soil microfauna, as reflected in the <span class="hlt">community</span> <span class="hlt">composition</span> of microbivorous nematodes, is a combination of carbon input, microclimate amelioration, and altered soil hydrology. ?? Springer Science + Business Media B.V. 2009.</p> </li> <li> <p><a target="_blank" onclick="trackOutboundLink('https://www.pubmedcentral.nih.gov/articlerender.fcgi?tool=pmcentrez&artid=3783403','PMC'); return false;" href="https://www.pubmedcentral.nih.gov/articlerender.fcgi?tool=pmcentrez&artid=3783403"><span>Tropical Aquatic Archaea Show Environment-Specific <span class="hlt">Community</span> <span class="hlt">Composition</span></span></a></p> <p><a target="_blank" href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?DB=pmc">PubMed Central</a></p> <p>Silveira, Cynthia B.; Cardoso, Alexander M.; Coutinho, Felipe H.; Lima, Joyce L.; Pinto, Leonardo H.; Albano, Rodolpho M.; Clementino, Maysa M.; Martins, Orlando B.; Vieira, Ricardo P.</p> <p>2013-01-01</p> <p>The Archaea domain is ubiquitously distributed and extremely diverse, however, environmental factors that shape archaeal <span class="hlt">community</span> structure are not well known. Aquatic environments, including the water column and sediments harbor many new uncultured archaeal species from which metabolic and ecological roles remain elusive. Some environments are especially neglected in terms of archaeal diversity, as is the case of pristine tropical areas. Here we investigate the archaeal <span class="hlt">composition</span> in marine and freshwater systems from Ilha Grande, a South Atlantic tropical environment. All sampled habitats showed high archaeal diversity. No OTUs were shared between freshwater, marine and mangrove sediment samples, yet these environments are interconnected and geographically close, indicating environment-specific <span class="hlt">community</span> structuring. Group II Euryarchaeota was the main clade in marine samples, while the new putative phylum Thaumarchaeota and LDS/RCV Euryarchaeota dominated freshwaters. Group III Euryarchaeota , a rare clade, was also retrieved in reasonable abundance in marine samples. The archaeal <span class="hlt">community</span> from mangrove sediments was composed mainly by members of mesophilic Crenarchaeota and by a distinct clade forming a sister-group to Crenarchaeota and Thaumarchaeota. Our results show strong environment-specific <span class="hlt">community</span> structuring in tropical aquatic Archaea, as previously seen for Bacteria. PMID:24086729</p> </li> </ol> <div class="pull-right"> <ul class="pagination"> <li><a href="#" onclick='return showDiv("page_1");'>«</a></li> <li><a href="#" onclick='return showDiv("page_21");'>21</a></li> <li><a href="#" onclick='return showDiv("page_22");'>22</a></li> <li class="active"><span>23</span></li> <li><a href="#" onclick='return showDiv("page_24");'>24</a></li> <li><a href="#" onclick='return showDiv("page_25");'>25</a></li> <li><a href="#" onclick='return showDiv("page_25");'>»</a></li> </ul> </div> </div><!-- col-sm-12 --> </div><!-- row --> </div><!-- page_23 --> <div id="page_24" class="hiddenDiv"> <div class="row"> <div class="col-sm-12"> <div class="pull-right"> <ul class="pagination"> <li><a href="#" onclick='return showDiv("page_1");'>«</a></li> <li><a href="#" onclick='return showDiv("page_21");'>21</a></li> <li><a href="#" onclick='return showDiv("page_22");'>22</a></li> <li><a href="#" onclick='return showDiv("page_23");'>23</a></li> <li class="active"><span>24</span></li> <li><a href="#" onclick='return showDiv("page_25");'>25</a></li> <li><a href="#" onclick='return showDiv("page_25");'>»</a></li> </ul> </div> </div> </div> <div class="row"> <div class="col-sm-12"> <ol class="result-class" start="461"> <li> <p><a target="_blank" onclick="trackOutboundLink('https://pubs.er.usgs.gov/publication/70046519','USGSPUBS'); return false;" href="https://pubs.er.usgs.gov/publication/70046519"><span>Microbial <span class="hlt">community</span> <span class="hlt">composition</span> and endolith colonization at an Arctic thermal spring are driven by calcite precipitation</span></a></p> <p><a target="_blank" href="http://pubs.er.usgs.gov/pubs/index.jsp?view=adv">USGS Publications Warehouse</a></p> <p>Starke, Verena; Kirshtein, Julie; Fogel, Marilyn L.; Steele, Andrew</p> <p>2013-01-01</p> <p>Environmental conditions shape <span class="hlt">community</span> <span class="hlt">composition</span>. Arctic thermal springs provide an opportunity to study how environmental gradients can impose strong selective pressures on microbial <span class="hlt">communities</span> and provide a continuum of niche opportunities. We use microscopic and molecular methods to conduct a survey of microbial <span class="hlt">community</span> <span class="hlt">composition</span> at Troll Springs on Svalbard, Norway, in the high Arctic. Microorganisms there exist under a wide range of environmental conditions: in warm water as periphyton, in moist granular materials, and in cold, dry rock as endoliths. Troll Springs has two distinct ecosystems, aquatic and terrestrial, together in close proximity, with different underlying environmental factors shaping each microbial <span class="hlt">community</span>. Periphyton are entrapped during precipitation of calcium carbonate from the spring's waters, providing microbial populations that serve as precursors for the development of endolithic <span class="hlt">communities</span>. This process differs from most endolith colonization, in which the rock predates the <span class="hlt">communities</span> that colonize it. <span class="hlt">Community</span> <span class="hlt">composition</span> is modulated as environmental conditions change within the springs. At Troll, the aquatic environments show a small number of dominant operational taxonomic units (OTUs) that are specific to each sample. The terrestrial environments show a more even distribution of OTUs common to multiple samples.</p> </li> <li> <p><a target="_blank" onclick="trackOutboundLink('https://www.osti.gov/servlets/purl/1129476','SCIGOV-DOEDE'); return false;" href="https://www.osti.gov/servlets/purl/1129476"><span>Plant <span class="hlt">community</span> <span class="hlt">composition</span> and vegetation height, Barrow, Alaska, Ver. 1</span></a></p> <p><a target="_blank" href="http://www.osti.gov/dataexplorer">DOE Data Explorer</a></p> <p>Siegrist, Julia; Norby, Richard; Sloan, Victoria; Iversen, Colleen; Brooks, Jonathan; Liebig, Jennifer; Wood, Sarah</p> <p>2014-04-25</p> <p>This dataset contains i) the results of field surveys of plant <span class="hlt">community</span> <span class="hlt">composition</span> and vegetation height made between 17th and 29th July 2012 in 48, 1 x 1 m plots located in areas A-D of Intensive Site 1 at the Next-Generation Ecosystem Experiments (NGEE) Arctic site near Barrow, Alaska and ii) results of a mapping exercise undertaken in August 2013 using two perpendicular transects across each polygon containing vegetation plots to determine the boundaries of vegetation <span class="hlt">communities</span> described in 2012.</p> </li> <li> <p><a target="_blank" onclick="trackOutboundLink('https://www.pubmedcentral.nih.gov/articlerender.fcgi?tool=pmcentrez&artid=3873959','PMC'); return false;" href="https://www.pubmedcentral.nih.gov/articlerender.fcgi?tool=pmcentrez&artid=3873959"><span>Bacterial <span class="hlt">Community</span> <span class="hlt">Composition</span> and Extracellular Enzyme Activity in Temperate Streambed Sediment during Drying and Rewetting</span></a></p> <p><a target="_blank" href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?DB=pmc">PubMed Central</a></p> <p>Pohlon, Elisabeth; Ochoa Fandino, Adriana; Marxsen, Jürgen</p> <p>2013-01-01</p> <p>Droughts are among the most important disturbance events for stream ecosystems; they not only affect stream hydrology but also the stream biota. Although desiccation of streams is common in Mediterranean regions, phases of dryness in headwaters have been observed more often and for longer periods in extended temperate regions, including Central Europe, reflecting global climate change and enhanced water withdrawal. The effects of desiccation and rewetting on the bacterial <span class="hlt">community</span> <span class="hlt">composition</span> and extracellular enzyme activity, a key process in the carbon flow of streams and rivers, were investigated in a typical Central European stream, the Breitenbach (Hesse, Germany). Wet streambed sediment is an important habitat in streams. It was sampled and exposed in the laboratory to different drying scenarios (fast, intermediate, slow) for 13 weeks, followed by rewetting of the sediment from the fast drying scenario via a sediment core perfusion technique for 2 weeks. Bacterial <span class="hlt">community</span> structure was analyzed using CARD-FISH and TGGE, and extracellular enzyme activity was assessed using fluorogenic model substrates. During desiccation the bacterial <span class="hlt">community</span> <span class="hlt">composition</span> shifted toward <span class="hlt">composition</span> in soil, exhibiting increasing proportions of Actinobacteria and Alphaproteobacteria and decreasing proportions of Bacteroidetes and Betaproteobacteria. Simultaneously the activities of extracellular enzymes decreased, most pronounced with aminopeptidases and less pronounced with enzymes involved in the degradation of polymeric carbohydrates. After rewetting, the general ecosystem functioning, with respect to extracellular enzyme activity, recovered after 10 to 14 days. However, the bacterial <span class="hlt">community</span> <span class="hlt">composition</span> had not yet achieved its original <span class="hlt">composition</span> as in unaffected sediments within this time. Thus, whether the bacterial <span class="hlt">community</span> eventually recovers completely after these events remains unknown. Perhaps this <span class="hlt">community</span> undergoes permanent changes, especially after</p> </li> <li> <p><a target="_blank" onclick="trackOutboundLink('https://www.ncbi.nlm.nih.gov/pubmed/27100017','PUBMED'); return false;" href="https://www.ncbi.nlm.nih.gov/pubmed/27100017"><span>Soil biochar amendment shapes the <span class="hlt">composition</span> of N2O-reducing microbial <span class="hlt">communities</span>.</span></a></p> <p><a target="_blank" href="https://www.ncbi.nlm.nih.gov/entrez/query.fcgi?DB=pubmed">PubMed</a></p> <p>Harter, Johannes; Weigold, Pascal; El-Hadidi, Mohamed; Huson, Daniel H; Kappler, Andreas; Behrens, Sebastian</p> <p>2016-08-15</p> <p>Soil biochar amendment has been described as a promising tool to improve soil quality, sequester carbon, and mitigate nitrous oxide (N2O) emissions. N2O is a potent greenhouse gas. The main sources of N2O in soils are microbially-mediated nitrogen transformation processes such as nitrification and denitrification. While previous studies have focused on the link between N2O emission mitigation and the abundance and activity of N2O-reducing microorganisms in biochar-amended soils, the impact of biochar on the taxonomic <span class="hlt">composition</span> of the nosZ gene carrying soil microbial <span class="hlt">community</span> has not been subject of systematic study to date. We used 454 pyrosequencing in order to study the microbial diversity in biochar-amended and biochar-free soil microcosms. We sequenced bacterial 16S rRNA gene amplicons as well as fragments of common (typical) nosZ genes and the recently described 'atypical' nosZ genes. The aim was to describe biochar-induced shifts in general bacterial <span class="hlt">community</span> diversity and taxonomic variations among the nosZ gene containing N2O-reducing microbial <span class="hlt">communities</span>. While soil biochar amendment significantly altered the 16S rRNA gene-based <span class="hlt">community</span> <span class="hlt">composition</span> and structure, it also led to the development of distinct functional traits capable of N2O reduction containing typical and atypical nosZ genes related to nosZ genes found in Pseudomonas stutzeri and Pedobacter saltans, respectively. Our results showed that biochar amendment can affect the relative abundance and taxonomic <span class="hlt">composition</span> of N2O-reducing functional microbial traits in soil. Thus these findings broaden our knowledge on the impact of biochar on soil microbial <span class="hlt">community</span> <span class="hlt">composition</span> and nitrogen cycling. Copyright © 2016 Elsevier B.V. All rights reserved.</p> </li> <li> <p><a target="_blank" onclick="trackOutboundLink('https://www.ncbi.nlm.nih.gov/pubmed/27878083','PUBMED'); return false;" href="https://www.ncbi.nlm.nih.gov/pubmed/27878083"><span>Interactive effects between plant functional types and soil factors on tundra species diversity and <span class="hlt">community</span> <span class="hlt">composition</span>.</span></a></p> <p><a target="_blank" href="https://www.ncbi.nlm.nih.gov/entrez/query.fcgi?DB=pubmed">PubMed</a></p> <p>Iturrate-Garcia, Maitane; O'Brien, Michael J; Khitun, Olga; Abiven, Samuel; Niklaus, Pascal A; Schaepman-Strub, Gabriela</p> <p>2016-11-01</p> <p>Plant <span class="hlt">communities</span> are coupled with abiotic factors, as species diversity and <span class="hlt">community</span> <span class="hlt">composition</span> both respond to and influence climate and soil characteristics. Interactions between vegetation and abiotic factors depend on plant functional types (PFT) as different growth forms will have differential responses to and effects on site characteristics. However, despite the importance of different PFT for <span class="hlt">community</span> assembly and ecosystem functioning, research has mainly focused on vascular plants. Here, we established a set of observational plots in two contrasting habitats in northeastern Siberia in order to assess the relationship between species diversity and <span class="hlt">community</span> <span class="hlt">composition</span> with soil variables, as well as the relationship between vegetation cover and species diversity for two PFT (nonvascular and vascular). We found that nonvascular species diversity decreased with soil acidity and moisture and, to a lesser extent, with soil temperature and active layer thickness. In contrast, no such correlation was found for vascular species diversity. Differences in <span class="hlt">community</span> <span class="hlt">composition</span> were found mainly along soil acidity and moisture gradients. However, the proportion of variation in <span class="hlt">composition</span> explained by the measured soil variables was much lower for nonvascular than for vascular species when considering the PFT separately. We also found different relationships between vegetation cover and species diversity according the PFT and habitat. In support of niche differentiation theory, species diversity and <span class="hlt">community</span> <span class="hlt">composition</span> were related to edaphic factors. The distinct relationships found for nonvascular and vascular species suggest the importance of considering multiple PFT when assessing species diversity and <span class="hlt">composition</span> and their interaction with edaphic factors. Synthesis : Identifying vegetation responses to edaphic factors is a first step toward a better understanding of vegetation-soil feedbacks under climate change. Our results suggest that incorporating</p> </li> <li> <p><a target="_blank" onclick="trackOutboundLink('https://www.ncbi.nlm.nih.gov/pubmed/28273334','PUBMED'); return false;" href="https://www.ncbi.nlm.nih.gov/pubmed/28273334"><span>Predator <span class="hlt">community</span> <span class="hlt">composition</span> is linked to soil carbon retention across a human land use gradient.</span></a></p> <p><a target="_blank" href="https://www.ncbi.nlm.nih.gov/entrez/query.fcgi?DB=pubmed">PubMed</a></p> <p>Schmitz, Oswald J; Buchkowski, Robert W; Smith, Jeffrey R; Telthorst, Mark; Rosenblatt, Adam E</p> <p>2017-05-01</p> <p>Soil carbon (C) storage is a major component of the carbon cycle. Consensus holds that soil C uptake and storage is regulated by plant-microbe-soil interactions. However, the contribution of animals in aboveground food webs to this process has been overlooked. Using insights from prior long-term experimentation in an old-field ecosystem and mathematical modeling, we predicted that the amount of soil C retention within a field should increase with the proportion of active hunting predators comprising the aboveground <span class="hlt">community</span> of active hunting and sit-and-wait predators. This comes about because predators with different hunting modes have different cascading effects on plants. Our test of the prediction revealed that the <span class="hlt">composition</span> of the arthropod predator <span class="hlt">community</span> and associated cascading effects on the plant <span class="hlt">community</span> explained 41% of variation in soil C retention among 15 old fields across a human land use gradient. We also evaluated the potential for several other candidate factors to explain variation in soil C retention among fields, independent of among-field variation in the predator <span class="hlt">community</span>. These included live plant biomass, insect herbivore <span class="hlt">community</span> <span class="hlt">composition</span>, soil arthropod decomposer <span class="hlt">community</span> <span class="hlt">composition</span>, degree of land use development around the fields, field age, and soil texture. None of these candidate variables significantly explained soil C retention among the fields. The study offers a generalizable understanding of the pathways through which arthropod predator <span class="hlt">community</span> <span class="hlt">composition</span> can contribute to old-field ecosystem carbon storage. This insight helps support ongoing efforts to understand and manage the effects of anthropogenic land use change on soil C storage. © 2017 by the Ecological Society of America.</p> </li> <li> <p><a target="_blank" onclick="trackOutboundLink('http://adsabs.harvard.edu/abs/2017EGUGA..1916916S','NASAADS'); return false;" href="http://adsabs.harvard.edu/abs/2017EGUGA..1916916S"><span>Changes in fungal <span class="hlt">community</span> <span class="hlt">composition</span> in response to experimental soil warming at the alpine treeline</span></a></p> <p><a target="_blank" href="http://adsabs.harvard.edu/abstract_service.html">NASA Astrophysics Data System (ADS)</a></p> <p>Solly, Emily; Lindahl, Bjorn; Dawes, Melissa; Peter, Martina; Souza, Romulo; Rixen, Christian; Hagedorn, Frank</p> <p>2017-04-01</p> <p>Increased CO2 emissions and global warming may alter the <span class="hlt">composition</span> of fungal <span class="hlt">communities</span> through the reduction of low temperature limitation in the plant-soil system, faster nitrogen cycling and changes in the carbon allocation of host plants to the rhizosphere. Shifts in fungal <span class="hlt">community</span> <span class="hlt">composition</span> due to global changes are likely to affect the routes of carbon and nitrogen flows in the plant-soil system and alter the rates at which organic matter is decomposed. The main aim of our study was to estimate the effects of multiple years of free air CO2 enrichment (ambient concentration +200 ppm) and soil warming (+ 4°C) on the fungal <span class="hlt">community</span> structure and <span class="hlt">composition</span>. At an alpine treeline in Switzerland featuring two key high-elevation tree species, Larix decidua and Pinus uncinata, fungal <span class="hlt">communities</span> within different organic horizons were analysed by high-throughput 454-pyrosequencing of ITS2 amplicons. In addition, we assessed the ectomycorrhizal <span class="hlt">community</span> <span class="hlt">composition</span> on root tips and monitored changes in sporocarp productivity of fungal species during the course of the experiment. Three years of experimental warming at the alpine treeline altered the <span class="hlt">composition</span> of the fungal <span class="hlt">community</span> in the organic horizons, whereas nine years of CO2 enrichment had only weak effects. Tree species influenced the <span class="hlt">composition</span> of the fungal <span class="hlt">community</span> and the magnitude of the responses of fungal functional groups to soil warming differed between plots with Larix and those with Pinus. The abundance of ectomycorrhizal fungi was positively correlated with nitrogen availability, and ectomycorrhizal taxa specialized for conditions of high nitrogen availability proliferated with warming, corresponding to considerable increases in extractable inorganic nitrogen in warmed soils. Changes in productivity of specific fungal fruiting bodies in response to soil warming (e.g. more Lactarius rufus sporocarps and less Hygrophorus speciousus sporocarps) were consistent with the 454-sequencing</p> </li> <li> <p><a target="_blank" onclick="trackOutboundLink('https://www.ncbi.nlm.nih.gov/pubmed/29691934','PUBMED'); return false;" href="https://www.ncbi.nlm.nih.gov/pubmed/29691934"><span>Temperature gradient affects differentiation of gene expression and SNP allele frequencies in the dominant Lake Baikal <span class="hlt">zooplankton</span> species.</span></a></p> <p><a target="_blank" href="https://www.ncbi.nlm.nih.gov/entrez/query.fcgi?DB=pubmed">PubMed</a></p> <p>Bowman, Larry L; Kondrateva, Elizaveta S; Timofeyev, Maxim A; Yampolsky, Lev Y</p> <p>2018-06-01</p> <p>Local adaptation and phenotypic plasticity are main mechanisms of organisms' resilience in changing environments. Both are affected by gene flow and are expected to be weak in <span class="hlt">zooplankton</span> populations inhabiting large continuous water bodies and strongly affected by currents. Lake Baikal, the deepest and one of the coldest lakes on Earth, experienced epilimnion temperature increase during the last 100 years, exposing Baikal's <span class="hlt">zooplankton</span> to novel selective pressures. We obtained a partial transcriptome of Epischura baikalensis (Copepoda: Calanoida), the dominant component of Baikal's <span class="hlt">zooplankton</span>, and estimated SNP allele frequencies and transcript abundances in samples from regions of Baikal that differ in multiyear average surface temperatures. The strongest signal in both SNP and transcript abundance differentiation is the SW-NE gradient along the 600+ km long axis of the lake, suggesting isolation by distance. SNP differentiation is stronger for nonsynonymous than synonymous SNPs and is paralleled by differential survival during a laboratory exposure to increased temperature, indicating directional selection operating on the temperature gradient. Transcript abundance, generally collinear with the SNP differentiation, shows samples from the warmest, less deep location clustering together with the southernmost samples. Differential expression is more frequent among transcripts orthologous to candidate thermal response genes previously identified in model arthropods, including genes encoding cytoskeleton proteins, heat-shock proteins, proteases, enzymes of central energy metabolism, lipid and antioxidant pathways. We conclude that the pivotal endemic <span class="hlt">zooplankton</span> species in Lake Baikal exists under temperature-mediated selection and possesses both genetic variation and plasticity to respond to novel temperature-related environmental pressures. © 2018 John Wiley & Sons Ltd.</p> </li> <li> <p><a target="_blank" onclick="trackOutboundLink('https://www.pubmedcentral.nih.gov/articlerender.fcgi?tool=pmcentrez&artid=4388535','PMC'); return false;" href="https://www.pubmedcentral.nih.gov/articlerender.fcgi?tool=pmcentrez&artid=4388535"><span>Receding Water Line and Interspecific Competition Determines Plant <span class="hlt">Community</span> <span class="hlt">Composition</span> and Diversity in Wetlands in Beijing</span></a></p> <p><a target="_blank" href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?DB=pmc">PubMed Central</a></p> <p>Wang, Zhengjun; Gong, Huili; Zhang, Jing</p> <p>2015-01-01</p> <p>Climate and human-induced wetland degradation has accelerated in recent years, not only resulting in reduced ecosystem services but also greatly affecting the <span class="hlt">composition</span> and diversity of wetland plant <span class="hlt">communities</span>. To date, the knowledge of the differences in <span class="hlt">community</span> parameters and their successional trends in degraded wetlands remains scarce. Here based on remote sensing images, geographic information system technology, and statistical methods, we produced a successional gradient map of the Yeyahu Wetland Nature Reserve in Beijing, which has experienced a steady decline in water level in recent decades. In addition, we analyzed <span class="hlt">community</span> <span class="hlt">composition</span> and diversity along with each identified gradient. The results showed that <span class="hlt">community</span> diversity decreases while dominance increases with the progress of succession, with the highest diversity occurring during the early stage of succession. Moreover, the <span class="hlt">community</span> demonstrates greater similarity among subareas during later successional stages, and the similarity coefficients calculated from the important value (IV) of each species are more accurate. Correlation analysis showed that the impact of soil factors on diversity was not significant at a subarea scale, although these nutrients showed an increasing trend with the <span class="hlt">community</span> succession. Furthermore, the IVs of the dominant species had a particularly significant impact on diversity, showing a significantly negative correlation with diversity indices and a significantly positive correlation with dominance indices. Further analysis showed that the retreat of water level resulted from sustained drought and local human activities was a major extrinsic driving force resulting in observed differences in the <span class="hlt">community</span> successional stages, which resulted in differences in <span class="hlt">community</span> <span class="hlt">composition</span> and diversity. On the other hand, interspecific competition was the main intrinsic mechanism, which significantly influenced the IVs of the dominant species and <span class="hlt">community</span> diversity</p> </li> <li> <p><a target="_blank" onclick="trackOutboundLink('https://www.ncbi.nlm.nih.gov/pubmed/29733107','PUBMED'); return false;" href="https://www.ncbi.nlm.nih.gov/pubmed/29733107"><span>Repeated disturbances affect functional but not <span class="hlt">compositional</span> resistance and resilience in an aquatic bacterioplankton <span class="hlt">community</span>.</span></a></p> <p><a target="_blank" href="https://www.ncbi.nlm.nih.gov/entrez/query.fcgi?DB=pubmed">PubMed</a></p> <p>Sjöstedt, Johanna; Langenheder, Silke; Kritzberg, Emma; Karlsson, Christofer M G; Lindström, Eva S</p> <p>2018-05-07</p> <p>Disturbances are believed to be one of the main factors influencing variations in <span class="hlt">community</span> diversity and functioning. Here we investigated if exposure to a pH press disturbance affected the <span class="hlt">composition</span> and functional performance of a bacterial <span class="hlt">community</span> and its resistance, recovery and resilience to a second press disturbance (salt addition). Lake bacterial assemblages were initially exposed to reduced pH in six mesocosms whereas another six mesocosms were kept as reference. Seven days after the pH disturbance, three tanks from each treatment were exposed to a salt disturbance. Both bacterial production and enzyme activity were negatively affected by the salt treatment, regardless if the <span class="hlt">communities</span> had been subject to a previous disturbance or not. However, cell-specific enzyme activity had a higher resistance in <span class="hlt">communities</span> pre-exposed to the pH disturbance compared to the reference treatment. In contrast, for cell-specific bacterial production resistance was not affected, but recovery was faster in the <span class="hlt">communities</span> that had previously been exposed to the pH disturbance. Over time, bacterial <span class="hlt">community</span> <span class="hlt">composition</span> diverged among treatments, in response to both pH and salinity. The difference in functional recovery, resilience and resistance may depend on differences in <span class="hlt">community</span> <span class="hlt">composition</span> caused by the pH disturbance, niche breadth or acquired stress resistance. This article is protected by copyright. All rights reserved. © 2018 Society for Applied Microbiology and John Wiley & Sons Ltd.</p> </li> <li> <p><a target="_blank" onclick="trackOutboundLink('https://www.ncbi.nlm.nih.gov/pubmed/29228354','PUBMED'); return false;" href="https://www.ncbi.nlm.nih.gov/pubmed/29228354"><span>Prolonged exposure does not increase soil microbial <span class="hlt">community</span> <span class="hlt">compositional</span> response to warming along geothermal gradients.</span></a></p> <p><a target="_blank" href="https://www.ncbi.nlm.nih.gov/entrez/query.fcgi?DB=pubmed">PubMed</a></p> <p>Radujkovic, Dajana; Verbruggen, Erik; Sigurdsson, Bjarni D; Leblans, Niki I W; Janssens, Ivan A; Vicca, Sara; Weedon, James T</p> <p>2018-02-01</p> <p>Global change is expected to affect soil microbial <span class="hlt">communities</span> through their responsiveness to temperature. It has been proposed that prolonged exposure to elevated temperatures may lead to progressively larger effects on soil microbial <span class="hlt">community</span> <span class="hlt">composition</span>. However, due to the relatively short-term nature of most warming experiments, this idea has been challenging to evaluate. The present study took the advantage of natural geothermal gradients (from +1°C to +19°C above ambient) in two subarctic grasslands to test the hypothesis that long-term exposure (>50 years) intensifies the effect of warming on microbial <span class="hlt">community</span> <span class="hlt">composition</span> compared to short-term exposure (5-7 years). <span class="hlt">Community</span> profiles from amplicon sequencing of bacterial and fungal rRNA genes did not support this hypothesis: significant changes relative to ambient were observed only starting from the warming intensity of +9°C in the long term and +7°C/+3°C in the short term, for bacteria and fungi, respectively. Our results suggest that microbial <span class="hlt">communities</span> in high-latitude grasslands will not undergo lasting shifts in <span class="hlt">community</span> <span class="hlt">composition</span> under the warming predicted for the coming 100 years (+2.2°C to +8.3°C). © FEMS 2017. All rights reserved. For permissions, please e-mail: journals.permissions@oup.com.</p> </li> <li> <p><a target="_blank" onclick="trackOutboundLink('http://adsabs.harvard.edu/abs/2008AGUFM.B52A..07D','NASAADS'); return false;" href="http://adsabs.harvard.edu/abs/2008AGUFM.B52A..07D"><span>Predicting effects of climate change on the <span class="hlt">composition</span> and function of soil microbial <span class="hlt">communities</span></span></a></p> <p><a target="_blank" href="http://adsabs.harvard.edu/abstract_service.html">NASA Astrophysics Data System (ADS)</a></p> <p>Dubinsky, E.; Brodie, E.; Myint, C.; Ackerly, D.; van Nostrand, J.; Bird, J.; Zhou, J.; Andersen, G.; Firestone, M.</p> <p>2008-12-01</p> <p>Complex soil microbial <span class="hlt">communities</span> regulate critical ecosystem processes that will be altered by climate change. A critical step towards predicting the impacts of climate change on terrestrial ecosystems is to determine the primary controllers of soil microbial <span class="hlt">community</span> <span class="hlt">composition</span> and function, and subsequently evaluate climate change scenarios that alter these controllers. We surveyed complex soil bacterial and archaeal <span class="hlt">communities</span> across a range of climatic and edaphic conditions to identify critical controllers of soil microbial <span class="hlt">community</span> <span class="hlt">composition</span> in the field and then tested the resulting predictions using a 2-year manipulation of precipitation and temperature using mesocosms of California annual grasslands. <span class="hlt">Community</span> DNA extracted from field soils sampled from six different ecosystems was assayed for bacterial and archaeal <span class="hlt">communities</span> using high-density phylogenetic microarrays as well as functional gene arrays. Correlations among the relative abundances of thousands of microbial taxa and edaphic factors such as soil moisture and nutrient content provided a basis for predicting <span class="hlt">community</span> responses to changing soil conditions. <span class="hlt">Communities</span> of soil bacteria and archaea were strongly structured by single environmental predictors, particularly variables related to soil water. Bacteria in the Actinomycetales and Bacilli consistently demonstrated a strong negative response to increasing soil moisture, while taxa in a greater variety of lineages responded positively to increasing soil moisture. In the climate change experiment, overall bacterial <span class="hlt">community</span> structure was impacted significantly by total precipitation but not by plant species. Changes in soil moisture due to decreased rainfall resulted in significant and predictable alterations in <span class="hlt">community</span> structure. Over 70% of the bacterial taxa in common with the cross-ecosystem study responded as predicted to altered precipitation, with the most conserved response from Actinobacteria. The functional consequences</p> </li> <li> <p><a target="_blank" onclick="trackOutboundLink('https://www.ncbi.nlm.nih.gov/pubmed/24929348','PUBMED'); return false;" href="https://www.ncbi.nlm.nih.gov/pubmed/24929348"><span>Temporal dynamics of bird <span class="hlt">community</span> <span class="hlt">composition</span>: an analysis of baseline conditions from long-term data.</span></a></p> <p><a target="_blank" href="https://www.ncbi.nlm.nih.gov/entrez/query.fcgi?DB=pubmed">PubMed</a></p> <p>Kampichler, Christian; Angeler, David G; Holmes, Richard T; Leito, Aivar; Svensson, Sören; van der Jeugd, Henk P; Wesołowski, Tomasz</p> <p>2014-08-01</p> <p>Numerous anthropogenic activities threaten the biodiversity found on earth. Because all ecological <span class="hlt">communities</span> constantly experience temporal turnover due to natural processes, it is important to distinguish between change due to anthropogenic impact and the underlying natural rate of change. In this study, we used data sets on breeding bird <span class="hlt">communities</span> that covered at least 20 consecutive years, from a variety of terrestrial ecosystems, to address two main questions. (1) How fast does the <span class="hlt">composition</span> of bird <span class="hlt">communities</span> change over time, and can we identify a baseline of natural change that distinguishes primeval systems from systems experiencing varying degrees of human impact? (2) How do patterns of temporal variation in <span class="hlt">composition</span> vary among bird <span class="hlt">communities</span> in ecosystems with different anthropogenic impacts? Time lag analysis (TLA) showed a pattern of increasing rate of temporal <span class="hlt">compositional</span> change from large-scale primeval systems to disturbed and protected systems to distinctly successional systems. TLA slopes of <0.04 were typical for breeding bird <span class="hlt">communities</span> with natural turnover, while <span class="hlt">communities</span> subjected to anthropogenic impact were characterised by TLA slopes of >0.04. Most of the temporal variability of breeding bird <span class="hlt">communities</span> was explained by slow changes occurring over decades, regardless of the intensity of human impact. In most of the time series, medium- and short-wave periodicity was not detected, with the exception of breeding bird <span class="hlt">communities</span> subjected to periodic pulses (e.g. caterpillar outbreaks causing food resource peaks).</p> </li> <li> <p><a target="_blank" onclick="trackOutboundLink('https://cfpub.epa.gov/si/si_public_record_report.cfm?dirEntryId=233339&keyword=nursery&actType=&TIMSType=+&TIMSSubTypeID=&DEID=&epaNumber=&ntisID=&archiveStatus=Both&ombCat=Any&dateBeginCreated=&dateEndCreated=&dateBeginPublishedPresented=&dateEndPublishedPresented=&dateBeginUpdated=&dateEndUpdated=&dateBeginCompleted=&dateEndCompleted=&personID=&role=Any&journalID=&publisherID=&sortBy=revisionDate&count=50','EPA-EIMS'); return false;" href="https://cfpub.epa.gov/si/si_public_record_report.cfm?dirEntryId=233339&keyword=nursery&actType=&TIMSType=+&TIMSSubTypeID=&DEID=&epaNumber=&ntisID=&archiveStatus=Both&ombCat=Any&dateBeginCreated=&dateEndCreated=&dateBeginPublishedPresented=&dateEndPublishedPresented=&dateBeginUpdated=&dateEndUpdated=&dateBeginCompleted=&dateEndCompleted=&personID=&role=Any&journalID=&publisherID=&sortBy=revisionDate&count=50"><span><span class="hlt">Zooplankton</span> Linkages between Rivers and Great Lakes: Case Study from the St. Louis River</span></a></p> <p><a target="_blank" href="http://oaspub.epa.gov/eims/query.page">EPA Science Inventory</a></p> <p></p> <p></p> <p>In this case study, we characterized the spatial and seasonal distribution and abundance of <span class="hlt">zooplankton</span> within the hydrologically complex drowned river mouth of the St. Louis River, the second largest tributary to Lake Superior and an important fish nursery. We hypothesize that z...</p> </li> <li> <p><a target="_blank" onclick="trackOutboundLink('https://www.pubmedcentral.nih.gov/articlerender.fcgi?tool=pmcentrez&artid=5018118','PMC'); return false;" href="https://www.pubmedcentral.nih.gov/articlerender.fcgi?tool=pmcentrez&artid=5018118"><span>Species <span class="hlt">composition</span>, <span class="hlt">community</span> and population dynamics of two gallery forests from the Brazilian Cerrado domain</span></a></p> <p><a target="_blank" href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?DB=pmc">PubMed Central</a></p> <p>Almado, Roosevelt P; Miazaki, Angela S; Diniz, Écio S; Moreira, Luis C B; Meira-Neto, João A.A.</p> <p>2016-01-01</p> <p>Abstract Background To understand the impacts of global changes on future <span class="hlt">community</span> <span class="hlt">compositions</span>, knowledge of <span class="hlt">community</span> dynamics is of crucial importance. To improve our knowledge of <span class="hlt">community</span> <span class="hlt">composition</span>, biomass stock and maintenance of gallery forests in the Brazilian Cerrado, we provide two datasets from the 0.5 ha Corrego Fazendinha Gallery Forest Dynamics Plot and the Corrego Fundo Gallery Forest Dynamics Plot situated in the Bom Despacho region, Minas Gerais, Southeastern Brazil. New information We report diameter at breast height, basal area and height measurements of 3417 trees and treelets identified during three censuses in both areas. PMID:27660529</p> </li> <li> <p><a target="_blank" onclick="trackOutboundLink('http://adsabs.harvard.edu/abs/2015BGD....1218315H','NASAADS'); return false;" href="http://adsabs.harvard.edu/abs/2015BGD....1218315H"><span>Dead zone or oasis in the open ocean? <span class="hlt">Zooplankton</span> distribution and migration in low-oxygen modewater eddies</span></a></p> <p><a target="_blank" href="http://adsabs.harvard.edu/abstract_service.html">NASA Astrophysics Data System (ADS)</a></p> <p>Hauss, H.; Christiansen, S.; Schütte, F.; Kiko, R.; Edvam Lima, M.; Rodrigues, E.; Karstensen, J.; Löscher, C. R.; Körtzinger, A.; Fiedler, B.</p> <p>2015-11-01</p> <p>The eastern tropical North Atlantic (ETNA) features a mesopelagic oxygen minimum zone (OMZ) at approximately 300-600 m depth. Here, oxygen concentrations rarely fall below 40 μmol O2 kg-1, but are thought to decline in the course of climate change. The recent discovery of mesoscale eddies that harbour a shallow suboxic (< 5 μmol O2 kg-1) OMZ just below the mixed layer could serve to identify <span class="hlt">zooplankton</span> groups that may be negatively or positively affected by on-going ocean deoxygenation. In spring 2014, a detailed survey of a suboxic anticyclonic modewater eddy (ACME) was carried out near the Cape Verde Ocean Observatory (CVOO), combining acoustic and optical profiling methods with stratified multinet hauls and hydrography. The multinet data revealed that the eddy was characterized by an approximately 1.5-fold increase in total area-integrated <span class="hlt">zooplankton</span> abundance. A marked reduction in acoustic target strength (derived from shipboard ADCP, 75kHz) within the shallow OMZ at nighttime was evident. Acoustic scatterers were avoiding the depth range between about 85 to 120 m, where oxygen concentrations were lower than approximately 20 μmol O2 kg-1, indicating habitat compression to the oxygenated surface layer. This observation is confirmed by time-series observations of a moored ADCP (upward looking, 300 kHz) during an ACME transit at the CVOO mooring in 2010. Nevertheless, part of the diurnal vertical migration (DVM) from the surface layer to the mesopelagic continued through the shallow OMZ. Based upon vertically stratified multinet hauls, Underwater Vision Profiler (UVP5) and ADCP data, four strategies have been identified followed by <span class="hlt">zooplankton</span> in response to the eddy OMZ: (i) shallow OMZ avoidance and compression at the surface (e.g. most calanoid copepods, euphausiids), (ii) migration to the shallow OMZ core during daytime, but paying O2 debt at the surface at nighttime (e.g. siphonophores, Oncaea spp., eucalanoid copepods), (iii) residing in the shallow</p> </li> <li> <p><a target="_blank" onclick="trackOutboundLink('https://www.pubmedcentral.nih.gov/articlerender.fcgi?tool=pmcentrez&artid=3935972','PMC'); return false;" href="https://www.pubmedcentral.nih.gov/articlerender.fcgi?tool=pmcentrez&artid=3935972"><span>Road Salts as Environmental Constraints in Urban Pond Food Webs</span></a></p> <p><a target="_blank" href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?DB=pmc">PubMed Central</a></p> <p>Van Meter, Robin J.; Swan, Christopher M.</p> <p>2014-01-01</p> <p>Freshwater salinization is an emerging environmental filter in urban aquatic ecosystems that receive chloride road salt runoff from vast expanses of impervious surface cover. Our study was designed to evaluate the effects of chloride contamination on urban stormwater pond food webs through changes in <span class="hlt">zooplankton</span> <span class="hlt">community</span> <span class="hlt">composition</span> as well as density and biomass of primary producers and consumers. From May – July 2009, we employed a 2×2×2 full-factorial design to manipulate chloride concentration (low = 177 mg L−1 Cl−/high = 1067 mg L−1 Cl−), gray treefrog (Hyla versicolor) tadpoles (presence/absence) and source of stormwater pond algae and <span class="hlt">zooplankton</span> inoculum (low conductance/high conductance urban ponds) in 40, 600-L mesocosms. Road salt did serve as a constraint on <span class="hlt">zooplankton</span> <span class="hlt">community</span> structure, driving <span class="hlt">community</span> divergence between the low and high chloride treatments. Phytoplankton biomass (chlorophyll [a] µg L−1) in the mesocosms was significantly greater for the high conductance inoculum (P<0.001) and in the high chloride treatment (P = 0.046), whereas periphyton biomass was significantly lower in the high chloride treatment (P = 0.049). Gray treefrog tadpole time to metamorphosis did not vary significantly between treatments. However, mass at metamorphosis was greater among tadpoles that experienced a faster than average time to metamorphosis and exposure to high chloride concentrations (P = 0.039). Our results indicate differential susceptibility to chloride salts among algal resources and <span class="hlt">zooplankton</span> taxa, and further suggest that road salts can act as a significant environmental constraint on urban stormwater pond <span class="hlt">communities</span>. PMID:24587259</p> </li> <li> <p><a target="_blank" onclick="trackOutboundLink('https://www.ncbi.nlm.nih.gov/pubmed/27755702','PUBMED'); return false;" href="https://www.ncbi.nlm.nih.gov/pubmed/27755702"><span>Are cattle surrogate wildlife? Savanna plant <span class="hlt">community</span> <span class="hlt">composition</span> explained by total herbivory more than herbivore type.</span></a></p> <p><a target="_blank" href="https://www.ncbi.nlm.nih.gov/entrez/query.fcgi?DB=pubmed">PubMed</a></p> <p>Veblen, Kari E; Porensky, Lauren M; Riginos, Corinna; Young, Truman P</p> <p>2016-09-01</p> <p>The widespread replacement of wild ungulate herbivores by domestic livestock in African savannas is composed of two interrelated phenomena: (1) loss or reduction in numbers of individual wildlife species or guilds and (2) addition of livestock to the system. Each can have important implications for plant <span class="hlt">community</span> dynamics. Yet very few studies have experimentally addressed the individual, combined, and potentially interactive effects of wild vs. domestic herbivore species on herbaceous plant <span class="hlt">communities</span> within a single system. Additionally, there is little information about whether, and in which contexts, livestock might functionally replace native herbivore wildlife or, alternatively, have fundamentally different effects on plant species <span class="hlt">composition</span>. The Kenya Long-term Exclosure Experiment, which has been running since 1995, is composed of six treatment combinations of mega-herbivores, meso-herbivore ungulate wildlife, and cattle. We sampled herbaceous vegetation 25 times between 1999 and 2013. We used partial redundancy analysis and linear mixed models to assess effects of herbivore treatments on overall plant <span class="hlt">community</span> <span class="hlt">composition</span> and key plant species. Plant <span class="hlt">communities</span> in the six different herbivore treatments shifted directionally over time and diverged from each other substantially by 2013. Plant <span class="hlt">community</span> <span class="hlt">composition</span> was strongly related (R 2  = 0.92) to residual plant biomass, a measure of herbivore utilization. Addition of any single herbivore type (cattle, wildlife, or mega-herbivores) caused a shift in plant <span class="hlt">community</span> <span class="hlt">composition</span> that was proportional to its removal of plant biomass. These results suggest that overall herbivory pressure, rather than herbivore type or complex interactions among different herbivore types, was the main driver of changes in plant <span class="hlt">community</span> <span class="hlt">composition</span>. Individual plant species, however, did respond most strongly to either wild ungulates or cattle. Although these results suggest considerable functional similarity between</p> </li> <li> <p><a target="_blank" onclick="trackOutboundLink('https://www.fs.usda.gov/treesearch/pubs/27026','TREESEARCH'); return false;" href="https://www.fs.usda.gov/treesearch/pubs/27026"><span>Diptera <span class="hlt">community</span> <span class="hlt">composition</span> and succession following habitat disturbance by wildfire</span></a></p> <p><a target="_blank" href="http://www.fs.usda.gov/treesearch/">Treesearch</a></p> <p>Michael A. Patten; Jutta C. Burger; Thomas R. Prentice; John T. Rotenberry; Richard A. Redak</p> <p>2005-01-01</p> <p>Both biogeographic (for example, latitude) and local (for example, soil) processes determine <span class="hlt">composition</span> and succession of biotic <span class="hlt">communities</span>. Postfire succession of vegetation has been studied intensively in chaparral and coastal sage scrub. Fewer studies have examined postfire succession of animals, even though fires can drastically alter their abundance and...</p> </li> <li> <p><a target="_blank" onclick="trackOutboundLink('https://www.osti.gov/servlets/purl/1178419','SCIGOV-STC'); return false;" href="https://www.osti.gov/servlets/purl/1178419"><span>Land-use history alters contemporary insect herbivore <span class="hlt">community</span> <span class="hlt">composition</span> and decouples plant-herbivore relationships</span></a></p> <p><a target="_blank" href="http://www.osti.gov/search">DOE Office of Scientific and Technical Information (OSTI.GOV)</a></p> <p>Hahn, Philip G.; Orrock, John L.</p> <p></p> <p>1. Past land use can create altered soil conditions and plant <span class="hlt">communities</span> that persist for decades, although the effects of these altered conditions on consumers are rarely investigated. 2. Using a large-scale field study at 36 sites in longleaf pine (Pinus palustris) woodlands, we examined whether historic agricultural land use leads to differences in the abundance and <span class="hlt">community</span> <span class="hlt">composition</span> of insect herbivores (grasshoppers, families Acrididae and Tettigoniidae). 3. We measured the cover of six plant functional groups and several environmental variables to determine whether historic agricultural land use affects the relationships between plant cover or environmental conditions and grasshopper assemblages.more » 4. Land-use history had taxa-specific effects and interacted with herbaceous plant cover to alter grasshopper abundances, leading to significant changes in <span class="hlt">community</span> <span class="hlt">composition</span>. Abundance of most grasshopper taxa increased with herbaceous cover in woodlands with no history of agriculture, but there was no relationship in post-agricultural woodlands. We also found that grasshopper abundance was negatively correlated with leaf litter cover. Soil hardness was greater in post-agricultural sites (i.e. more compacted) and was associated with grasshopper <span class="hlt">community</span> <span class="hlt">composition</span>. Both herbaceous cover and leaf litter cover are influenced by fire frequency, suggesting a potential indirect role of fire on grasshopper assemblages. 5. Our results demonstrate that historic land use may create persistent differences in the <span class="hlt">composition</span> of grasshopper assemblages, while contemporary disturbances (e.g. prescribed fire) may be important for determining the abundance of grasshoppers, largely through the effect of fire on plants and leaf litter. Therefore, our results suggest that changes in the contemporary management regimes (e.g. increasing prescribed fire) may not be sufficient to shift the structure of grasshopper <span class="hlt">communities</span> in post-agricultural sites towards</p> </li> </ol> <div class="pull-right"> <ul class="pagination"> <li><a href="#" onclick='return showDiv("page_1");'>«</a></li> <li><a href="#" onclick='return showDiv("page_21");'>21</a></li> <li><a href="#" onclick='return showDiv("page_22");'>22</a></li> <li><a href="#" onclick='return showDiv("page_23");'>23</a></li> <li class="active"><span>24</span></li> <li><a href="#" onclick='return showDiv("page_25");'>25</a></li> <li><a href="#" onclick='return showDiv("page_25");'>»</a></li> </ul> </div> </div><!-- col-sm-12 --> </div><!-- row --> </div><!-- page_24 --> <div id="page_25" class="hiddenDiv"> <div class="row"> <div class="col-sm-12"> <div class="pull-right"> <ul class="pagination"> <li><a href="#" onclick='return showDiv("page_1");'>«</a></li> <li><a href="#" onclick='return showDiv("page_21");'>21</a></li> <li><a href="#" onclick='return showDiv("page_22");'>22</a></li> <li><a href="#" onclick='return showDiv("page_23");'>23</a></li> <li><a href="#" onclick='return showDiv("page_24");'>24</a></li> <li class="active"><span>25</span></li> <li><a href="#" onclick='return showDiv("page_25");'>»</a></li> </ul> </div> </div> </div> <div class="row"> <div class="col-sm-12"> <ol class="result-class" start="481"> <li> <p><a target="_blank" onclick="trackOutboundLink('https://www.osti.gov/pages/biblio/1178419-land-use-history-alters-contemporary-insect-herbivore-community-composition-decouples-plant-herbivore-relationships','SCIGOV-DOEP'); return false;" href="https://www.osti.gov/pages/biblio/1178419-land-use-history-alters-contemporary-insect-herbivore-community-composition-decouples-plant-herbivore-relationships"><span>Land-use history alters contemporary insect herbivore <span class="hlt">community</span> <span class="hlt">composition</span> and decouples plant-herbivore relationships</span></a></p> <p><a target="_blank" href="http://www.osti.gov/pages">DOE PAGES</a></p> <p>Hahn, Philip G.; Orrock, John L.</p> <p>2014-11-23</p> <p>1. Past land use can create altered soil conditions and plant <span class="hlt">communities</span> that persist for decades, although the effects of these altered conditions on consumers are rarely investigated. 2. Using a large-scale field study at 36 sites in longleaf pine (Pinus palustris) woodlands, we examined whether historic agricultural land use leads to differences in the abundance and <span class="hlt">community</span> <span class="hlt">composition</span> of insect herbivores (grasshoppers, families Acrididae and Tettigoniidae). 3. We measured the cover of six plant functional groups and several environmental variables to determine whether historic agricultural land use affects the relationships between plant cover or environmental conditions and grasshopper assemblages.more » 4. Land-use history had taxa-specific effects and interacted with herbaceous plant cover to alter grasshopper abundances, leading to significant changes in <span class="hlt">community</span> <span class="hlt">composition</span>. Abundance of most grasshopper taxa increased with herbaceous cover in woodlands with no history of agriculture, but there was no relationship in post-agricultural woodlands. We also found that grasshopper abundance was negatively correlated with leaf litter cover. Soil hardness was greater in post-agricultural sites (i.e. more compacted) and was associated with grasshopper <span class="hlt">community</span> <span class="hlt">composition</span>. Both herbaceous cover and leaf litter cover are influenced by fire frequency, suggesting a potential indirect role of fire on grasshopper assemblages. 5. Our results demonstrate that historic land use may create persistent differences in the <span class="hlt">composition</span> of grasshopper assemblages, while contemporary disturbances (e.g. prescribed fire) may be important for determining the abundance of grasshoppers, largely through the effect of fire on plants and leaf litter. Therefore, our results suggest that changes in the contemporary management regimes (e.g. increasing prescribed fire) may not be sufficient to shift the structure of grasshopper <span class="hlt">communities</span> in post-agricultural sites towards</p> </li> <li> <p><a target="_blank" onclick="trackOutboundLink('https://www.ncbi.nlm.nih.gov/pubmed/15538634','PUBMED'); return false;" href="https://www.ncbi.nlm.nih.gov/pubmed/15538634"><span>Effects of plant diversity, <span class="hlt">community</span> <span class="hlt">composition</span> and environmental parameters on productivity in montane European grasslands.</span></a></p> <p><a target="_blank" href="https://www.ncbi.nlm.nih.gov/entrez/query.fcgi?DB=pubmed">PubMed</a></p> <p>Kahmen, Ansgar; Perner, Jörg; Audorff, Volker; Weisser, Wolfgang; Buchmann, Nina</p> <p>2005-02-01</p> <p>In the past years, a number of studies have used experimental plant <span class="hlt">communities</span> to test if biodiversity influences ecosystem functioning such as productivity. It has been argued, however, that the results achieved in experimental studies may have little predictive value for species loss in natural ecosystems. Studies in natural ecosystems have been equivocal, mainly because in natural ecosystems differences in diversity are often confounded with differences in land use history or abiotic parameters. In this study, we investigated the effect of plant diversity on ecosystem functioning in semi-natural grasslands. In an area of 10x20 km, we selected 78 sites and tested the effects of various measures of diversity and plant <span class="hlt">community</span> <span class="hlt">composition</span> on productivity. We separated the effects of plant diversity on ecosystem functioning from potentially confounding effects of <span class="hlt">community</span> <span class="hlt">composition</span>, management or environmental parameters, using multivariate statistical analyses. In the investigated grasslands, simple measures of biodiversity were insignificant predictors of productivity. However, plant <span class="hlt">community</span> <span class="hlt">composition</span> explained productivity very well (R2=0.31) and was a better predictor than environmental variables (soil and site characteristics) or management regime. Thus, complex measures such as <span class="hlt">community</span> <span class="hlt">composition</span> and structure are important drivers for ecosystem functions in semi-natural grasslands. Furthermore, our data show that it is difficult to extrapolate results from experimental studies to semi-natural ecosystems, although there is a need to investigate natural ecosystems to fully understand the relationship of biodiversity and ecosystem functioning.</p> </li> <li> <p><a target="_blank" onclick="trackOutboundLink('http://adsabs.harvard.edu/abs/2016DSRI..110..106C','NASAADS'); return false;" href="http://adsabs.harvard.edu/abs/2016DSRI..110..106C"><span>Mesoscale and sub-mesoscale variability in phytoplankton <span class="hlt">community</span> <span class="hlt">composition</span> in the Sargasso Sea</span></a></p> <p><a target="_blank" href="http://adsabs.harvard.edu/abstract_service.html">NASA Astrophysics Data System (ADS)</a></p> <p>Cotti-Rausch, Bridget E.; Lomas, Michael W.; Lachenmyer, Eric M.; Goldman, Emily A.; Bell, Douglas W.; Goldberg, Stacey R.; Richardson, Tammi L.</p> <p>2016-04-01</p> <p>The Sargasso Sea is a dynamic physical environment in which strong seasonal variability combines with forcing by mesoscale (~100 km) eddies. These drivers determine nutrient, light, and temperature regimes and, ultimately, the <span class="hlt">composition</span> and productivity of the phytoplankton <span class="hlt">community</span>. On four cruises (2011 and 2012; one eddy per cruise), we investigated links between water column structure and phytoplankton <span class="hlt">community</span> <span class="hlt">composition</span> in the Sargasso at a range of time and space scales. On all cruises, cyanobacteria (Prochlorococcus and Synechococcus) dominated the phytoplankton numerically, while haptophytes were the dominant eukaryotes (up to 60% of total chl-a). There were substantial effects of mesoscale and sub-mesoscale forcing on phytoplankton <span class="hlt">community</span> <span class="hlt">composition</span> in both spring and summer. Downwelling (in anticyclones) resulted in Prochlorococcus abundances that were 22-66% higher than at 'outside' stations. Upwelling (in cyclones) was associated with significantly higher abundances and POC biomass of nanoeukaryotes. In general, however, each eddy had its own unique characteristics. The center of anticyclone AC1 (spring 2011) had the lowest phytoplankton biomass (chl-a) of any eddy we studied and had lower nitrate+nitrite (N+N <5 mmol m-2) and eukaryote chl-a biomass as compared to its edge and to the Bermuda Atlantic Time-Series station (BATS). At the center of cyclone C1 (summer 2011), we observed uplift of the 26.5 kg m-3 isopycnal and high nutrient inventories (N+N=74±46 mmol m-2). We also observed significantly higher haptophyte chl-a (non-coccolithophores) and lower cyanobacterial chl-a at the center and edge of C1 as compared to outside the eddy at BATS. Cyclone C2 (spring 2012) exhibited a deep mixed layer, yet had relatively low nutrient concentrations. We observed a shift in the taxonomic <span class="hlt">composition</span> of haptophytes between a coccolithophore-dominated <span class="hlt">community</span> in C2 (98% of total haptophyte chl-a) and a non-coccolithophore <span class="hlt">community</span> at BATS. In</p> </li> <li> <p><a target="_blank" onclick="trackOutboundLink('https://www.ncbi.nlm.nih.gov/pubmed/27934957','PUBMED'); return false;" href="https://www.ncbi.nlm.nih.gov/pubmed/27934957"><span>Urban-development-induced Changes in the Diversity and <span class="hlt">Composition</span> of the Soil Bacterial <span class="hlt">Community</span> in Beijing.</span></a></p> <p><a target="_blank" href="https://www.ncbi.nlm.nih.gov/entrez/query.fcgi?DB=pubmed">PubMed</a></p> <p>Yan, Bing; Li, Junsheng; Xiao, Nengwen; Qi, Yue; Fu, Gang; Liu, Gaohui; Qiao, Mengping</p> <p>2016-12-09</p> <p>Numerous studies have implicated urbanization as a major cause of loss of biodiversity. Most of them have focused on plants and animals, even though soil microorganisms make up a large proportion of that biodiversity. However, it is unclear how the soil bacterial <span class="hlt">community</span> is affected by urban development. Here, paired-end Illumina sequencing of the 16 S rRNA gene at V4 region was performed to study the soil microbial <span class="hlt">community</span> across Beijing's built-up area. Proteobacteria, Acidobacteria, Bacteroidetes, Actinobacteria, Gemmatimonadetes, Verrucomicrobia, Planctomycetes, and Chloroflexi were the dominant phyla in all samples, but the relative abundance of these phyla differed significantly across these concentric zones. The diversity and <span class="hlt">composition</span> of the soil bacterial <span class="hlt">community</span> were found to be closely correlated with soil pH. Variance partitioning analysis suggested that urban ring roads contributed 5.95% of the bacterial <span class="hlt">community</span> variation, and soil environmental factors explained 17.65% of the variation. The results of the current work indicate that urban development can alter the <span class="hlt">composition</span> and diversity of the soil microbial <span class="hlt">community</span>, and showed pH to be a key factor in the shaping of the <span class="hlt">composition</span> of the soil bacterial <span class="hlt">community</span>. Urban development did have a strong impact on the bacterial <span class="hlt">community</span> of urban soil in Beijing.</p> </li> <li> <p><a target="_blank" onclick="trackOutboundLink('http://adsabs.harvard.edu/abs/2016NatSR...638811Y','NASAADS'); return false;" href="http://adsabs.harvard.edu/abs/2016NatSR...638811Y"><span>Urban-development-induced Changes in the Diversity and <span class="hlt">Composition</span> of the Soil Bacterial <span class="hlt">Community</span> in Beijing</span></a></p> <p><a target="_blank" href="http://adsabs.harvard.edu/abstract_service.html">NASA Astrophysics Data System (ADS)</a></p> <p>Yan, Bing; Li, Junsheng; Xiao, Nengwen; Qi, Yue; Fu, Gang; Liu, Gaohui; Qiao, Mengping</p> <p>2016-12-01</p> <p>Numerous studies have implicated urbanization as a major cause of loss of biodiversity. Most of them have focused on plants and animals, even though soil microorganisms make up a large proportion of that biodiversity. However, it is unclear how the soil bacterial <span class="hlt">community</span> is affected by urban development. Here, paired-end Illumina sequencing of the 16 S rRNA gene at V4 region was performed to study the soil microbial <span class="hlt">community</span> across Beijing’s built-up area. Proteobacteria, Acidobacteria, Bacteroidetes, Actinobacteria, Gemmatimonadetes, Verrucomicrobia, Planctomycetes, and Chloroflexi were the dominant phyla in all samples, but the relative abundance of these phyla differed significantly across these concentric zones. The diversity and <span class="hlt">composition</span> of the soil bacterial <span class="hlt">community</span> were found to be closely correlated with soil pH. Variance partitioning analysis suggested that urban ring roads contributed 5.95% of the bacterial <span class="hlt">community</span> variation, and soil environmental factors explained 17.65% of the variation. The results of the current work indicate that urban development can alter the <span class="hlt">composition</span> and diversity of the soil microbial <span class="hlt">community</span>, and showed pH to be a key factor in the shaping of the <span class="hlt">composition</span> of the soil bacterial <span class="hlt">community</span>. Urban development did have a strong impact on the bacterial <span class="hlt">community</span> of urban soil in Beijing.</p> </li> <li> <p><a target="_blank" onclick="trackOutboundLink('https://www.ncbi.nlm.nih.gov/pubmed/29733348','PUBMED'); return false;" href="https://www.ncbi.nlm.nih.gov/pubmed/29733348"><span>Progressive biogeochemical transformation of placer gold particles drives <span class="hlt">compositional</span> changes in associated biofilm <span class="hlt">communities</span>.</span></a></p> <p><a target="_blank" href="https://www.ncbi.nlm.nih.gov/entrez/query.fcgi?DB=pubmed">PubMed</a></p> <p>Rea, Maria Angelica; Standish, Christopher D; Shuster, Jeremiah; Bissett, Andrew; Reith, Frank</p> <p>2018-05-03</p> <p>Biofilms on placer gold (Au)-particle surfaces drive Au solubilization and re-concentration thereby progressively transforming the particles. Gold solubilization induces Au-toxicity; however, Au-detoxifying <span class="hlt">community</span> members ameliorates Au-toxicity by precipitating soluble Au to metallic Au. We hypothesize that Au-dissolution and re-concentration (precipitation) places selective pressures on associated microbial <span class="hlt">communities</span>, leading to <span class="hlt">compositional</span> changes and subsequent Au-particle transformation. We analyzed Au-particles from eight United Kingdom sites using next generation sequencing, electron microscopy and micro-analyses. Gold particles contained biofilms composed of prokaryotic cells and extracellular polymeric substances intermixed with (bio)minerals. Across all sites <span class="hlt">communities</span> were dominated by Proteobacteria (689, 97% Operational Taxonomic Units, 59.3% of total reads), with β-Proteobacteria being the most abundant. A wide range of Au-morphotypes including nanoparticles, micro-crystals, sheet-like Au and secondary rims, indicated that dissolution and re-precipitation occurred, and from this transformation indices were calculated. Multivariate statistical analyses showed a significant relationship between the extent of Au-particle transformation and biofilm <span class="hlt">community</span> <span class="hlt">composition</span>, with putative metal-resistant Au-cycling taxa linked to progressive Au transformation. These included the genera Pseudomonas, Leptothrix and Acinetobacter. Additionally, putative exoelectrogenic genera Rhodoferax and Geobacter were highly abundant. In conclusion, biogeochemical Au-cycling and Au-particle transformation occurred at all sites and exerted a strong influence on biofilm <span class="hlt">community</span> <span class="hlt">composition</span>.</p> </li> <li> <p><a target="_blank" onclick="trackOutboundLink('http://adsabs.harvard.edu/abs/2016CorRe..35..495L','NASAADS'); return false;" href="http://adsabs.harvard.edu/abs/2016CorRe..35..495L"><span>Can heterotrophic uptake of dissolved organic carbon and <span class="hlt">zooplankton</span> mitigate carbon budget deficits in annually bleached corals?</span></a></p> <p><a target="_blank" href="http://adsabs.harvard.edu/abstract_service.html">NASA Astrophysics Data System (ADS)</a></p> <p>Levas, Stephen; Grottoli, Andréa G.; Schoepf, Verena; Aschaffenburg, Matthew; Baumann, Justin; Bauer, James E.; Warner, Mark E.</p> <p>2016-06-01</p> <p>Annual coral bleaching events due to increasing sea surface temperatures are predicted to occur globally by the mid-century and as early as 2025 in the Caribbean, and severely impact coral reefs. We hypothesize that heterotrophic carbon (C) in the form of <span class="hlt">zooplankton</span> and dissolved organic carbon (DOC) is a significant source of C to bleached corals. Thus, the ability to utilize multiple pools of fixed carbon and/or increase the amount of fixed carbon acquired from one or more pools of fixed carbon (defined here as heterotrophic plasticity) could underlie coral acclimatization and persistence under future ocean-warming scenarios. Here, three species of Caribbean coral— Porites divaricata, P. astreoides, and Orbicella faveolata—were experimentally bleached for 2.5 weeks in two successive years and allowed to recover in the field. <span class="hlt">Zooplankton</span> feeding was assessed after single and repeat bleaching, while DOC fluxes and the contribution of DOC to the total C budget were determined after single bleaching, 11 months on the reef, and repeat bleaching. <span class="hlt">Zooplankton</span> was a large C source for P. astreoides, but only following single bleaching. DOC was a source of C for single-bleached corals and accounted for 11-36 % of daily metabolic demand (CHARDOC), but represented a net loss of C in repeat-bleached corals. In repeat-bleached corals, DOC loss exacerbated the negative C budgets in all three species. Thus, the capacity for heterotrophic plasticity in corals is compromised under annual bleaching, and heterotrophic uptake of DOC and <span class="hlt">zooplankton</span> does not mitigate C budget deficits in annually bleached corals. Overall, these findings suggest that some Caribbean corals may be more susceptible to repeat bleaching than to single bleaching due to a lack of heterotrophic plasticity, and coral persistence under increasing bleaching frequency may ultimately depend on other factors such as energy reserves and symbiont shuffling.</p> </li> <li> <p><a target="_blank" onclick="trackOutboundLink('https://www.ncbi.nlm.nih.gov/pubmed/26122566','PUBMED'); return false;" href="https://www.ncbi.nlm.nih.gov/pubmed/26122566"><span>Metals other than uranium affected microbial <span class="hlt">community</span> <span class="hlt">composition</span> in a historical uranium-mining site.</span></a></p> <p><a target="_blank" href="https://www.ncbi.nlm.nih.gov/entrez/query.fcgi?DB=pubmed">PubMed</a></p> <p>Sitte, Jana; Löffler, Sylvia; Burkhardt, Eva-Maria; Goldfarb, Katherine C; Büchel, Georg; Hazen, Terry C; Küsel, Kirsten</p> <p>2015-12-01</p> <p>To understand the links between the long-term impact of uranium and other metals on microbial <span class="hlt">community</span> <span class="hlt">composition</span>, ground- and surface water-influenced soils varying greatly in uranium and metal concentrations were investigated at the former uranium-mining district in Ronneburg, Germany. A soil-based 16S PhyloChip approach revealed 2358 bacterial and 35 archaeal operational taxonomic units (OTU) within diverse phylogenetic groups with higher OTU numbers than at other uranium-contaminated sites, e.g., at Oak Ridge. Iron- and sulfate-reducing bacteria (FeRB and SRB), which have the potential to attenuate uranium and other metals by the enzymatic and/or abiotic reduction of metal ions, were found at all sites. Although soil concentrations of solid-phase uranium were high, ranging from 5 to 1569 μg·g (dry weight) soil(-1), redundancy analysis (RDA) and forward selection indicated that neither total nor bio-available uranium concentrations contributed significantly to the observed OTU distribution. Instead, microbial <span class="hlt">community</span> <span class="hlt">composition</span> appeared to be influenced more by redox potential. Bacterial <span class="hlt">communities</span> were also influenced by bio-available manganese and total cobalt and cadmium concentrations. Bio-available cadmium impacted FeRB distribution while bio-available manganese and copper as well as solid-phase zinc concentrations in the soil affected SRB <span class="hlt">composition</span>. Archaeal <span class="hlt">communities</span> were influenced by the bio-available lead as well as total zinc and cobalt concentrations. These results suggest that (i) microbial richness was not impacted by heavy metals and radionuclides and that (ii) redox potential and secondary metal contaminants had the strongest effect on microbial <span class="hlt">community</span> <span class="hlt">composition</span>, as opposed to uranium, the primary source of contamination.</p> </li> <li> <p><a target="_blank" onclick="trackOutboundLink('https://www.ncbi.nlm.nih.gov/pubmed/21058562','PUBMED'); return false;" href="https://www.ncbi.nlm.nih.gov/pubmed/21058562"><span>Divergent <span class="hlt">composition</span> but similar function of soil food webs of individual plants: plant species and <span class="hlt">community</span> effects.</span></a></p> <p><a target="_blank" href="https://www.ncbi.nlm.nih.gov/entrez/query.fcgi?DB=pubmed">PubMed</a></p> <p>Bezemer, T M; Fountain, M T; Barea, J M; Christensen, S; Dekker, S C; Duyts, H; van Hal, R; Harvey, J A; Hedlund, K; Maraun, M; Mikola, J; Mladenov, A G; Robin, C; de Ruiter, P C; Scheu, S; Setälä, H; Smilauer, P; van der Putten, W H</p> <p>2010-10-01</p> <p>Soils are extremely rich in biodiversity, and soil organisms play pivotal roles in supporting terrestrial life, but the role that individual plants and plant <span class="hlt">communities</span> play in influencing the diversity and functioning of soil food webs remains highly debated. Plants, as primary producers and providers of resources to the soil food web, are of vital importance for the <span class="hlt">composition</span>, structure, and functioning of soil <span class="hlt">communities</span>. However, whether natural soil food webs that are completely open to immigration and emigration differ underneath individual plants remains unknown. In a biodiversity restoration experiment we first compared the soil nematode <span class="hlt">communities</span> of 228 individual plants belonging to eight herbaceous species. We included grass, leguminous, and non-leguminous species. Each individual plant grew intermingled with other species, but all plant species had a different nematode <span class="hlt">community</span>. Moreover, nematode <span class="hlt">communities</span> were more similar when plant individuals were growing in the same as compared to different plant <span class="hlt">communities</span>, and these effects were most apparent for the groups of bacterivorous, carnivorous, and omnivorous nematodes. Subsequently, we analyzed the <span class="hlt">composition</span>, structure, and functioning of the complete soil food webs of 58 individual plants, belonging to two of the plant species, Lotus corniculatus (Fabaceae) and Plantago lanceolata (Plantaginaceae). We isolated and identified more than 150 taxa/groups of soil organisms. The soil <span class="hlt">community</span> <span class="hlt">composition</span> and structure of the entire food webs were influenced both by the species identity of the plant individual and the surrounding plant <span class="hlt">community</span>. Unexpectedly, plant identity had the strongest effects on decomposing soil organisms, widely believed to be generalist feeders. In contrast, quantitative food web modeling showed that the <span class="hlt">composition</span> of the plant <span class="hlt">community</span> influenced nitrogen mineralization under individual plants, but that plant species identity did not affect nitrogen or carbon</p> </li> <li> <p><a target="_blank" onclick="trackOutboundLink('https://pubs.er.usgs.gov/publication/70035978','USGSPUBS'); return false;" href="https://pubs.er.usgs.gov/publication/70035978"><span>Strong evidence for terrestrial support of <span class="hlt">zooplankton</span> in small lakes based on stable isotopes of carbon, nitrogen, and hydrogen</span></a></p> <p><a target="_blank" href="http://pubs.er.usgs.gov/pubs/index.jsp?view=adv">USGS Publications Warehouse</a></p> <p>Cole, J.J.; Carpenter, S.R.; Kitchell, J.; Pace, M.L.; Solomon, C.T.; Weidel, B.</p> <p>2011-01-01</p> <p>Cross-ecosystem subsidies to food webs can alter metabolic balances in the receiving (subsidized) system and free the food web, or particular consumers, from the energetic constraints of local primary production. Although cross-ecosystem subsidies between terrestrial and aquatic systems have been well recognized for benthic organisms in streams, rivers, and the littoral zones of lakes, terrestrial subsidies to pelagic consumers are more difficult to demonstrate and remain controversial. Here, we adopt a unique approach by using stable isotopes of H, C, and N to estimate terrestrial support to <span class="hlt">zooplankton</span> in two contrasting lakes. <span class="hlt">Zooplankton</span> (Holopedium, Daphnia, and Leptodiaptomus) are comprised of ???20-40% of organic material of terrestrial origin. These estimates are as high as, or higher than, prior measures obtained by experimentally manipulating the inorganic 13C content of these lakes to augment the small, natural contrast in 13C between terrestrial and algal photosynthesis. Our study gives credence to a growing literature, which we review here, suggesting that significant terrestrial support of pelagic crustaceans (<span class="hlt">zooplankton</span>) is widespread.</p> </li> <li> <p><a target="_blank" onclick="trackOutboundLink('https://www.pubmedcentral.nih.gov/articlerender.fcgi?tool=pmcentrez&artid=3033307','PMC'); return false;" href="https://www.pubmedcentral.nih.gov/articlerender.fcgi?tool=pmcentrez&artid=3033307"><span>Strong evidence for terrestrial support of <span class="hlt">zooplankton</span> in small lakes based on stable isotopes of carbon, nitrogen, and hydrogen</span></a></p> <p><a target="_blank" href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?DB=pmc">PubMed Central</a></p> <p>Cole, Jonathan J.; Carpenter, Stephen R.; Kitchell, Jim; Pace, Michael L.; Solomon, Christopher T.; Weidel, Brian</p> <p>2011-01-01</p> <p>Cross-ecosystem subsidies to food webs can alter metabolic balances in the receiving (subsidized) system and free the food web, or particular consumers, from the energetic constraints of local primary production. Although cross-ecosystem subsidies between terrestrial and aquatic systems have been well recognized for benthic organisms in streams, rivers, and the littoral zones of lakes, terrestrial subsidies to pelagic consumers are more difficult to demonstrate and remain controversial. Here, we adopt a unique approach by using stable isotopes of H, C, and N to estimate terrestrial support to <span class="hlt">zooplankton</span> in two contrasting lakes. <span class="hlt">Zooplankton</span> (Holopedium, Daphnia, and Leptodiaptomus) are comprised of ≈20–40% of organic material of terrestrial origin. These estimates are as high as, or higher than, prior measures obtained by experimentally manipulating the inorganic 13C content of these lakes to augment the small, natural contrast in 13C between terrestrial and algal photosynthesis. Our study gives credence to a growing literature, which we review here, suggesting that significant terrestrial support of pelagic crustaceans (<span class="hlt">zooplankton</span>) is widespread. PMID:21245299</p> </li> <li> <p><a target="_blank" onclick="trackOutboundLink('https://www.ncbi.nlm.nih.gov/pubmed/26905979','PUBMED'); return false;" href="https://www.ncbi.nlm.nih.gov/pubmed/26905979"><span>Microplastics Alter the Properties and Sinking Rates of <span class="hlt">Zooplankton</span> Faecal Pellets.</span></a></p> <p><a target="_blank" href="https://www.ncbi.nlm.nih.gov/entrez/query.fcgi?DB=pubmed">PubMed</a></p> <p>Cole, Matthew; Lindeque, Penelope K; Fileman, Elaine; Clark, James; Lewis, Ceri; Halsband, Claudia; Galloway, Tamara S</p> <p>2016-03-15</p> <p>Plastic debris is a widespread contaminant, prevalent in aquatic ecosystems across the globe. <span class="hlt">Zooplankton</span> readily ingest microscopic plastic (microplastic, < 1 mm), which are later egested within their faecal pellets. These pellets are a source of food for marine organisms, and contribute to the oceanic vertical flux of particulate organic matter as part of the biological pump. The effects of microplastics on faecal pellet properties are currently unknown. Here we test the hypotheses that (1) faecal pellets are a vector for transport of microplastics, (2) polystyrene microplastics can alter the properties and sinking rates of <span class="hlt">zooplankton</span> egests and, (3) faecal pellets can facilitate the transfer of plastics to coprophagous biota. Following exposure to 20.6 μm polystyrene microplastics (1000 microplastics mL(-1)) and natural prey (∼1650 algae mL(-1)) the copepod Calanus helgolandicus egested faecal pellets with significantly (P < 0.001) reduced densities, a 2.25-fold reduction in sinking rates, and a higher propensity for fragmentation. We further show that microplastics, encapsulated within egests of the copepod Centropages typicus, could be transferred to C. helgolandicus via coprophagy. Our results support the proposal that sinking faecal matter represents a mechanism by which floating plastics can be vertically transported away from surface waters.</p> </li> <li> <p><a target="_blank" onclick="trackOutboundLink('http://adsabs.harvard.edu/abs/1999DSRII..46.2081M','NASAADS'); return false;" href="http://adsabs.harvard.edu/abs/1999DSRII..46.2081M"><span>Diel variations of the bathymetric distribution of <span class="hlt">zooplankton</span> groups and biomass in Cap-Ferret Canyon, France</span></a></p> <p><a target="_blank" href="http://adsabs.harvard.edu/abstract_service.html">NASA Astrophysics Data System (ADS)</a></p> <p>Maycas, Encarna Ribera; Bourdillon, André; Macquart-Moulin, Claude; Passelaigue, Françoise; Patriti, Gilbert</p> <p>1999-10-01</p> <p>The bathymetric distribution, abundance and diel vertical migrations (DVM) of <span class="hlt">zooplankton</span> were investigated along the axis of the Cap-Ferret Canyon (Bay of Biscay, French Atlantic coast) by a consecutive series of synchronous net hauls that sampled the whole water column (0-2000 m in depth) during a diel cycle. The distribution of appendicularians (maximum 189 individuals m -3), cladocerans (maximum 287 individuals m -3), copepods (copepods<4 mm, maximum 773 individuals m -3, copepods>4 mm, maximum 13 individuals m -3), ostracods (maximum 8 individuals m -3), siphonophores (maximum >2 individuals m -3) and peracarids (maximum >600 individuals 1000 m -3) were analysed and represented by isoline diagrams. The biomass of total <span class="hlt">zooplankton</span> (maximum 18419 μg C m -3, 3780 μg N m -3) and large copepods (>4 mm maximum 2256 μg C m -3, 425 μg N m -3) also were determined. Vertical migration was absent or affected only the epipelagic zone for appendicularians, cladocerans, small copepods and siphonophores. Average amplitude of vertical migration was about 400-500 m for ostracods, some hyperiids and mysids, and large copepods, which were often present in the epipelagic, mesopelagic, and bathypelagic zones. Large copepods can constitute more than 80% of the biomass corresponding to total <span class="hlt">zooplankton</span>. They may play an important role in the active vertical transfer of carbon and nitrogen.</p> </li> <li> <p><a target="_blank" onclick="trackOutboundLink('https://www.ncbi.nlm.nih.gov/pubmed/27344564','PUBMED'); return false;" href="https://www.ncbi.nlm.nih.gov/pubmed/27344564"><span>Effects of transgenic cry1Ie maize on non-lepidopteran pest abundance, diversity and <span class="hlt">community</span> <span class="hlt">composition</span>.</span></a></p> <p><a target="_blank" href="https://www.ncbi.nlm.nih.gov/entrez/query.fcgi?DB=pubmed">PubMed</a></p> <p>Guo, Jingfei; He, Kanglai; Bai, Shuxiong; Zhang, Tiantao; Liu, Yunjun; Wang, Fuxin; Wang, Zhenying</p> <p>2016-12-01</p> <p>Non-lepidopteran pests are exposed to, and may be influenced by, Bt toxins when feeding on Bt maize that express insecticidal Cry proteins derived from Bacillus thuringiensis (Bt). In order to assess the potential effects of transgenic cry1Ie maize on non-lepidopteran pest species and ecological <span class="hlt">communities</span>, a 2-year field study was conducted to compare the non-lepidopteran pest abundance, diversity and <span class="hlt">community</span> <span class="hlt">composition</span> between transgenic cry1Ie maize (Event IE09S034, Bt maize) and its near isoline (Zong 31, non-Bt maize) by whole plant inspections. Results showed that Bt maize had no effects on non-lepidopteran pest abundance and diversity (Shannon-Wiener diversity index, Simpson's diversity index, species richness, and Pielou's index). There was a significant effect of year and sampling time on those indices analyzed. Redundancy analysis indicated maize type, sampling time and year totally explained 20.43 % of the variance in the non-lepidopteran pest <span class="hlt">community</span> <span class="hlt">composition</span>, but no association was presented between maize type (Bt maize and non-Bt maize) and the variance. Nonmetric multidimensional scaling analysis showed that sampling time and year, rather than maize type had close relationship with the non-lepidopteran pest <span class="hlt">community</span> <span class="hlt">composition</span>. These results corroborated the hypothesis that, at least in the short-term, the transgenic cry1Ie maize had negligible effects on the non-lepidopteran pest abundance, diversity and <span class="hlt">community</span> <span class="hlt">composition</span>.</p> </li> <li> <p><a target="_blank" onclick="trackOutboundLink('https://www.pubmedcentral.nih.gov/articlerender.fcgi?tool=pmcentrez&artid=5905624','PMC'); return false;" href="https://www.pubmedcentral.nih.gov/articlerender.fcgi?tool=pmcentrez&artid=5905624"><span>Microbial <span class="hlt">community</span> <span class="hlt">composition</span> along a 50 000-year lacustrine sediment sequence</span></a></p> <p><a target="_blank" href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?DB=pmc">PubMed Central</a></p> <p>Ariztegui, Daniel; Horn, Fabian; Kallmeyer, Jens; Orsi, William D</p> <p>2018-01-01</p> <p>Abstract For decades, microbial <span class="hlt">community</span> <span class="hlt">composition</span> in subseafloor sediments has been the focus of extensive studies. In deep lacustrine sediments, however, the taxonomic <span class="hlt">composition</span> of microbial <span class="hlt">communities</span> remains undercharacterized. Greater knowledge on microbial diversity in lacustrine sediments would improve our understanding of how environmental factors, and resulting selective pressures, shape subsurface biospheres in marine and freshwater sediments. Using high-throughput sequencing of 16S rRNA genes across high-resolution climate intervals covering the last 50 000 years in Laguna Potrok Aike, Argentina, we identified changes in microbial populations in response to both past environmental conditions and geochemical changes of the sediment during burial. Microbial <span class="hlt">communities</span> in Holocene sediments were most diverse, reflecting a layering of taxa linked to electron acceptors availability. In deeper intervals, the data show that salinity, organic matter and the depositional conditions over the Last Glacial-interglacial cycle were all selective pressures in the deep lacustrine assemblage resulting in a genetically distinct biosphere from the surface dominated primarily by Bathyarchaeota and Atribacteria groups. However, similar to marine sediments, some dominant taxa in the shallow subsurface persisted into the subsurface as minor fraction of the <span class="hlt">community</span>. The subsequent establishment of a deep subsurface <span class="hlt">community</span> likely results from a combination of paleoenvironmental factors that have shaped the pool of available substrates, together with substrate depletion and/or reworking of organic matter with depth. PMID:29471361</p> </li> <li> <p><a target="_blank" onclick="trackOutboundLink('https://www.pubmedcentral.nih.gov/articlerender.fcgi?tool=pmcentrez&artid=4891773','PMC'); return false;" href="https://www.pubmedcentral.nih.gov/articlerender.fcgi?tool=pmcentrez&artid=4891773"><span>Differential effects of conifer and broadleaf litter inputs on soil organic carbon chemical <span class="hlt">composition</span> through altered soil microbial <span class="hlt">community</span> <span class="hlt">composition</span></span></a></p> <p><a target="_blank" href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?DB=pmc">PubMed Central</a></p> <p>Wang, Hui; Liu, Shi-Rong; Wang, Jing-Xin; Shi, Zuo-Min; Xu, Jia; Hong, Pi-Zheng; Ming, An-Gang; Yu, Hao-Long; Chen, Lin; Lu, Li-Hua; Cai, Dao-Xiong</p> <p>2016-01-01</p> <p>A strategic selection of tree species will shift the type and quality of litter input, and subsequently magnitude and <span class="hlt">composition</span> of the soil organic carbon (SOC) through soil microbial <span class="hlt">community</span>. We conducted a manipulative experiment in randomized block design with leaf litter inputs of four native subtropical tree species in a Pinus massoniana plantation in southern China and found that the chemical <span class="hlt">composition</span> of SOC did not differ significantly among treatments until after 28 months of the experiment. Contrasting leaf litter inputs had significant impacts on the amounts of total microbial, Gram-positive bacterial, and actinomycic PLFAs, but not on the amounts of total bacterial, Gram-negative bacterial, and fungal PLFAs. There were significant differences in alkyl/O-alkyl C in soils among the leaf litter input treatments, but no apparent differences in the proportions of chemical <span class="hlt">compositions</span> (alkyl, O-alkyl, aromatic, and carbonyl C) in SOC. Soil alkyl/O-alkyl C was significantly related to the amounts of total microbial, and Gram-positive bacterial PLFAs, but not to the chemical <span class="hlt">compositions</span> of leaf litter. Our findings suggest that changes in forest leaf litter inputs could result in changes in chemical stability of SOC through the altered microbial <span class="hlt">community</span> <span class="hlt">composition</span>. PMID:27256545</p> </li> <li> <p><a target="_blank" onclick="trackOutboundLink('https://www.ncbi.nlm.nih.gov/pubmed/27256545','PUBMED'); return false;" href="https://www.ncbi.nlm.nih.gov/pubmed/27256545"><span>Differential effects of conifer and broadleaf litter inputs on soil organic carbon chemical <span class="hlt">composition</span> through altered soil microbial <span class="hlt">community</span> <span class="hlt">composition</span>.</span></a></p> <p><a target="_blank" href="https://www.ncbi.nlm.nih.gov/entrez/query.fcgi?DB=pubmed">PubMed</a></p> <p>Wang, Hui; Liu, Shi-Rong; Wang, Jing-Xin; Shi, Zuo-Min; Xu, Jia; Hong, Pi-Zheng; Ming, An-Gang; Yu, Hao-Long; Chen, Lin; Lu, Li-Hua; Cai, Dao-Xiong</p> <p>2016-06-03</p> <p>A strategic selection of tree species will shift the type and quality of litter input, and subsequently magnitude and <span class="hlt">composition</span> of the soil organic carbon (SOC) through soil microbial <span class="hlt">community</span>. We conducted a manipulative experiment in randomized block design with leaf litter inputs of four native subtropical tree species in a Pinus massoniana plantation in southern China and found that the chemical <span class="hlt">composition</span> of SOC did not differ significantly among treatments until after 28 months of the experiment. Contrasting leaf litter inputs had significant impacts on the amounts of total microbial, Gram-positive bacterial, and actinomycic PLFAs, but not on the amounts of total bacterial, Gram-negative bacterial, and fungal PLFAs. There were significant differences in alkyl/O-alkyl C in soils among the leaf litter input treatments, but no apparent differences in the proportions of chemical <span class="hlt">compositions</span> (alkyl, O-alkyl, aromatic, and carbonyl C) in SOC. Soil alkyl/O-alkyl C was significantly related to the amounts of total microbial, and Gram-positive bacterial PLFAs, but not to the chemical <span class="hlt">compositions</span> of leaf litter. Our findings suggest that changes in forest leaf litter inputs could result in changes in chemical stability of SOC through the altered microbial <span class="hlt">community</span> <span class="hlt">composition</span>.</p> </li> <li> <p><a target="_blank" onclick="trackOutboundLink('http://adsabs.harvard.edu/abs/2016NatSR...627097W','NASAADS'); return false;" href="http://adsabs.harvard.edu/abs/2016NatSR...627097W"><span>Differential effects of conifer and broadleaf litter inputs on soil organic carbon chemical <span class="hlt">composition</span> through altered soil microbial <span class="hlt">community</span> <span class="hlt">composition</span></span></a></p> <p><a target="_blank" href="http://adsabs.harvard.edu/abstract_service.html">NASA Astrophysics Data System (ADS)</a></p> <p>Wang, Hui; Liu, Shi-Rong; Wang, Jing-Xin; Shi, Zuo-Min; Xu, Jia; Hong, Pi-Zheng; Ming, An-Gang; Yu, Hao-Long; Chen, Lin; Lu, Li-Hua; Cai, Dao-Xiong</p> <p>2016-06-01</p> <p>A strategic selection of tree species will shift the type and quality of litter input, and subsequently magnitude and <span class="hlt">composition</span> of the soil organic carbon (SOC) through soil microbial <span class="hlt">community</span>. We conducted a manipulative experiment in randomized block design with leaf litter inputs of four native subtropical tree species in a Pinus massoniana plantation in southern China and found that the chemical <span class="hlt">composition</span> of SOC did not differ significantly among treatments until after 28 months of the experiment. Contrasting leaf litter inputs had significant impacts on the amounts of total microbial, Gram-positive bacterial, and actinomycic PLFAs, but not on the amounts of total bacterial, Gram-negative bacterial, and fungal PLFAs. There were significant differences in alkyl/O-alkyl C in soils among the leaf litter input treatments, but no apparent differences in the proportions of chemical <span class="hlt">compositions</span> (alkyl, O-alkyl, aromatic, and carbonyl C) in SOC. Soil alkyl/O-alkyl C was significantly related to the amounts of total microbial, and Gram-positive bacterial PLFAs, but not to the chemical <span class="hlt">compositions</span> of leaf litter. Our findings suggest that changes in forest leaf litter inputs could result in changes in chemical stability of SOC through the altered microbial <span class="hlt">community</span> <span class="hlt">composition</span>.</p> </li> <li> <p><a target="_blank" onclick="trackOutboundLink('https://www.ncbi.nlm.nih.gov/pubmed/25365044','PUBMED'); return false;" href="https://www.ncbi.nlm.nih.gov/pubmed/25365044"><span>Similar processes but different environmental filters for soil bacterial and fungal <span class="hlt">community</span> <span class="hlt">composition</span> turnover on a broad spatial scale.</span></a></p> <p><a target="_blank" href="https://www.ncbi.nlm.nih.gov/entrez/query.fcgi?DB=pubmed">PubMed</a></p> <p>Chemidlin Prévost-Bouré, Nicolas; Dequiedt, Samuel; Thioulouse, Jean; Lelièvre, Mélanie; Saby, Nicolas P A; Jolivet, Claudy; Arrouays, Dominique; Plassart, Pierre; Lemanceau, Philippe; Ranjard, Lionel</p> <p>2014-01-01</p> <p>Spatial scaling of microorganisms has been demonstrated over the last decade. However, the processes and environmental filters shaping soil microbial <span class="hlt">community</span> structure on a broad spatial scale still need to be refined and ranked. Here, we compared bacterial and fungal <span class="hlt">community</span> <span class="hlt">composition</span> turnovers through a biogeographical approach on the same soil sampling design at a broad spatial scale (area range: 13300 to 31000 km2): i) to examine their spatial structuring; ii) to investigate the relative importance of environmental selection and spatial autocorrelation in determining their <span class="hlt">community</span> <span class="hlt">composition</span> turnover; and iii) to identify and rank the relevant environmental filters and scales involved in their spatial variations. Molecular fingerprinting of soil bacterial and fungal <span class="hlt">communities</span> was performed on 413 soils from four French regions of contrasting environmental heterogeneity (Landes<Burgundy≤Brittany<South-East) using the systematic grid of French Soil Quality Monitoring Network to evaluate the <span class="hlt">communities</span>' <span class="hlt">composition</span> turnovers. The relative importance of processes and filters was assessed by distance-based redundancy analysis. This study demonstrates significant <span class="hlt">community</span> <span class="hlt">composition</span> turnover rates for soil bacteria and fungi, which were dependent on the region. Bacterial and fungal <span class="hlt">community</span> <span class="hlt">composition</span> turnovers were mainly driven by environmental selection explaining from 10% to 20% of <span class="hlt">community</span> <span class="hlt">composition</span> variations, but spatial variables also explained 3% to 9% of total variance. These variables highlighted significant spatial autocorrelation of both <span class="hlt">communities</span> unexplained by the environmental variables measured and could partly be explained by dispersal limitations. Although the identified filters and their hierarchy were dependent on the region and organism, selection was systematically based on a common group of environmental variables: pH, trophic resources, texture and land use. Spatial autocorrelation was also important at coarse (80 to</p> </li> <li> <p><a target="_blank" onclick="trackOutboundLink('https://www.ncbi.nlm.nih.gov/pubmed/27604254','PUBMED'); return false;" href="https://www.ncbi.nlm.nih.gov/pubmed/27604254"><span>Small-scale spatial heterogeneity of ecosystem properties, microbial <span class="hlt">community</span> <span class="hlt">composition</span> and microbial activities in a temperate mountain forest soil.</span></a></p> <p><a target="_blank" href="https://www.ncbi.nlm.nih.gov/entrez/query.fcgi?DB=pubmed">PubMed</a></p> <p>Štursová, Martina; Bárta, Jiří; Šantrůčková, Hana; Baldrian, Petr</p> <p>2016-12-01</p> <p>Forests are recognised as spatially heterogeneous ecosystems. However, knowledge of the small-scale spatial variation in microbial abundance, <span class="hlt">community</span> <span class="hlt">composition</span> and activity is limited. Here, we aimed to describe the heterogeneity of environmental properties, namely vegetation, soil chemical <span class="hlt">composition</span>, fungal and bacterial abundance and <span class="hlt">community</span> <span class="hlt">composition</span>, and enzymatic activity, in the topsoil in a small area (36 m 2 ) of a highly heterogeneous regenerating temperate natural forest, and to explore the relationships among these variables. The results demonstrated a high level of spatial heterogeneity in all properties and revealed differences between litter and soil. Fungal <span class="hlt">communities</span> had substantially higher beta-diversity than bacterial <span class="hlt">communities</span>, which were more uniform and less spatially autocorrelated. In litter, fungal <span class="hlt">communities</span> were affected by vegetation and appeared to be more involved in decomposition. In the soil, chemical <span class="hlt">composition</span> affected both microbial abundance and the rates of decomposition, whereas the effect of vegetation was small. Importantly, decomposition appeared to be concentrated in hotspots with increased activity of multiple enzymes. Overall, forest topsoil should be considered a spatially heterogeneous environment in which the mean estimates of ecosystem-level processes and microbial <span class="hlt">community</span> <span class="hlt">composition</span> may confound the existence of highly specific microenvironments. © FEMS 2016. All rights reserved. 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